BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037303
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLDD + KNA PN NSA+G+ V+DNIK +E ACP +S S+
Sbjct: 49 GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVSLAGGPSWTVLLGRRDSL 128
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 109 SVTLAGGPSWRVPLGRRDSL 128
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC ASILLD+ F+ K+A+ N NSA+G+ VID +KA VE ACP T+S ++
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP W V LGRRD L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSL 127
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 45/80 (56%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACP--------------L 46
GC ASILLD+ KNA PN NSA+G+ V+DNIK +E ACP
Sbjct: 50 GCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQA 109
Query: 47 TISYSEGPYWPVRLGRRDGL 66
++S S GP W V LGRRD L
Sbjct: 110 SVSLSGGPSWTVDLGRRDTL 129
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 46/81 (56%), Gaps = 17/81 (20%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTIS----------- 49
GC AS+LLD D K A PN NSA+G+EVID IKA VE ACP +S
Sbjct: 48 GCDASLLLDGADSEKL---AIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARD 104
Query: 50 ---YSEGPYWPVRLGRRDGLI 67
S GP W V LGR+DGL+
Sbjct: 105 SVVLSGGPGWRVALGRKDGLV 125
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC AS+LLDD +F K A PN NS +G+EVID IK++VE CP +S ++
Sbjct: 48 GCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARD 107
Query: 53 ------GPYWPVRLGRRDGLINS 69
G W V LGRRD S
Sbjct: 108 SVVALGGASWNVLLGRRDSTTAS 130
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 14/80 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC S+LL++ D + ++A PN NS +G +V+++IK VE +CP T+S ++
Sbjct: 48 GCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEI 107
Query: 53 ------GPYWPVRLGRRDGL 66
GP WPV LGRRD L
Sbjct: 108 ASVLGGGPGWPVPLGRRDSL 127
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 1 GCYASILLDDIDDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSE-------- 52
GC AS+LLD + K+A PN S +G+EVI K+ VE ACP T+S ++
Sbjct: 48 GCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD 107
Query: 53 ------GPYWPVRLGRRDGLIN 68
+ V GRRDG ++
Sbjct: 108 SANLAGNITYQVPSGRRDGTVS 129
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 20/82 (24%)
Query: 1 GCYASILLDDIDDFKWGKNAWPN---RNSAQGYEVIDNIKAEVEKACP------------ 45
GC AS+LLD + A PN R SA ++ +++I+ +E+ C
Sbjct: 55 GCDASVLLDGSATGPGEQQAPPNLTLRPSA--FKAVNDIRDRLERECRGAVVSCSDILAL 112
Query: 46 ---LTISYSEGPYWPVRLGRRD 64
++ S GP + V LGRRD
Sbjct: 113 AARDSVVVSGGPDYRVPLGRRD 134
>pdb|1DBG|A Chain A, Crystal Structure Of Chondroitinase B
pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B
Length = 506
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 12 DDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSEGPYWPVRL 60
D F GKN+W N+ VEK P+ IS + Y PV++
Sbjct: 402 DYFIAGKNSWTG-----------NVALGVEKGIPVNISANRSAYKPVKI 439
>pdb|1OFM|A Chain A, Crystal Structure Of Chondroitinase B Complexed To
Chondroitin 4-sulfate Tetrasaccharide
pdb|1OFL|A Chain A, Crystal Structure Of Chondroitinase B Complexed To
Dermatan Sulfate Hexasaccharide
Length = 481
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 12 DDFKWGKNAWPNRNSAQGYEVIDNIKAEVEKACPLTISYSEGPYWPVRL 60
D F GKN+W N+ VEK P+ IS + Y PV++
Sbjct: 377 DYFIAGKNSWTG-----------NVALGVEKGIPVNISANRSAYKPVKI 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,239,391
Number of Sequences: 62578
Number of extensions: 76234
Number of successful extensions: 213
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 24
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)