BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037304
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEIST
KQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLT
VAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNP
TYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL
YTLDKPFSYIDHTVDEF

High Scoring Gene Products

Symbol, full name Information P value
RPP13
RECOGNITION OF PERONOSPORA PARASITICA 13 		protein from Arabidopsis thaliana 0.00031

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037304
        (257 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2075170 - symbol:RPP13 "RECOGNITION OF PERONOS...    98  0.00031   2


>TAIR|locus:2075170 [details] [associations]
            symbol:RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006952 "defense response" evidence=IEA;ISS;TAS]
            [GO:0043531 "ADP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=TAS] [GO:0009814 "defense response, incompatible
            interaction" evidence=IMP] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009626 "plant-type hypersensitive response"
            evidence=IMP] InterPro:IPR000767 InterPro:IPR002182 Pfam:PF00931
            PRINTS:PR00364 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043531 EMBL:AL133314
            GO:GO:0009626 eggNOG:KOG4658 GO:GO:0009814 ProtClustDB:CLSN2684836
            EMBL:AF209730 EMBL:AF209731 EMBL:AF209732 EMBL:AY037179
            EMBL:BT002246 IPI:IPI00529529 PIR:T45590 PIR:T51185 PIR:T51186
            RefSeq:NP_190237.1 UniGene:At.589 ProteinModelPortal:Q9M667
            SMR:Q9M667 STRING:Q9M667 PaxDb:Q9M667 PRIDE:Q9M667
            EnsemblPlants:AT3G46530.1 GeneID:823806 KEGG:ath:AT3G46530
            TAIR:At3g46530 InParanoid:Q9M667 OMA:FKELRHE PhylomeDB:Q9M667
            Genevestigator:Q9M667 GermOnline:AT3G46530 Uniprot:Q9M667
        Length = 835

 Score = 98 (39.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query:    50 SVFPVHFEISTKQLYQLWIAEGFIPNNNEA----TAERYLEQLINAGFVDAGKRSDRGRI 105
             S+FP  +EI  ++L  L +AEGFI  + E      A  Y+E+LI+   ++A +R +RG++
Sbjct:   425 SIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRR-ERGKV 483

 Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query:   191 KFLRVLDLGSLVLIRYPFEIE-NLFLLRYL 219
             K LRVLD GSL L   PF+I  +L  LRYL
Sbjct:   564 KLLRVLDFGSLWL---PFKINGDLIHLRYL 590


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.143   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      257       207   0.00099  111 3  11 22  0.43    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.32u 0.15s 15.47t   Elapsed:  00:00:01
  Total cpu time:  15.32u 0.15s 15.47t   Elapsed:  00:00:01
  Start:  Sat May 11 08:13:29 2013   End:  Sat May 11 08:13:30 2013

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