Query 037304
Match_columns 257
No_of_seqs 288 out of 2903
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-43 6.5E-48 333.7 15.6 234 8-249 373-629 (889)
2 PLN03210 Resistant to P. syrin 99.9 4.6E-22 9.9E-27 196.9 14.7 102 6-125 403-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.2 8.2E-12 1.8E-16 106.2 1.1 70 7-76 212-285 (287)
4 PF13855 LRR_8: Leucine rich r 98.9 9E-10 2E-14 71.3 3.7 60 191-250 1-61 (61)
5 KOG0617 Ras suppressor protein 98.9 1.2E-10 2.6E-15 89.6 -1.1 92 157-255 74-167 (264)
6 KOG0617 Ras suppressor protein 98.8 1.6E-10 3.5E-15 88.9 -2.5 112 141-257 79-192 (264)
7 KOG0444 Cytoskeletal regulator 98.8 6.3E-10 1.4E-14 100.6 -1.3 111 141-255 55-167 (1255)
8 PLN03150 hypothetical protein; 98.6 7.5E-08 1.6E-12 90.4 6.6 86 165-255 420-508 (623)
9 PLN00113 leucine-rich repeat r 98.6 8.9E-08 1.9E-12 94.5 7.3 66 184-250 181-248 (968)
10 PF12799 LRR_4: Leucine Rich r 98.5 6.1E-08 1.3E-12 58.2 2.9 38 215-253 2-39 (44)
11 PLN00113 leucine-rich repeat r 98.5 1.5E-07 3.2E-12 93.0 7.1 81 164-249 141-223 (968)
12 PF12799 LRR_4: Leucine Rich r 98.5 1.6E-07 3.5E-12 56.3 3.9 41 191-231 1-41 (44)
13 PF13855 LRR_8: Leucine rich r 98.4 3.6E-07 7.9E-12 59.0 3.9 59 164-226 2-61 (61)
14 KOG0444 Cytoskeletal regulator 98.4 4.4E-08 9.5E-13 89.0 -1.0 72 183-255 214-285 (1255)
15 KOG0472 Leucine-rich repeat pr 98.4 2.6E-08 5.6E-13 86.0 -2.5 66 183-250 244-309 (565)
16 KOG0472 Leucine-rich repeat pr 98.4 2.5E-08 5.4E-13 86.1 -2.9 93 157-257 201-294 (565)
17 PF14580 LRR_9: Leucine-rich r 98.3 4.5E-07 9.7E-12 71.3 4.0 102 143-252 21-127 (175)
18 PF14580 LRR_9: Leucine-rich r 98.3 5.3E-07 1.2E-11 70.8 3.9 88 158-253 15-103 (175)
19 PLN03150 hypothetical protein; 98.3 3.2E-06 7E-11 79.5 8.6 106 143-254 420-532 (623)
20 PLN03210 Resistant to P. syrin 98.2 3.9E-06 8.4E-11 84.3 7.8 61 187-249 653-715 (1153)
21 PRK15370 E3 ubiquitin-protein 98.1 6.2E-06 1.3E-10 78.7 7.4 59 192-255 242-300 (754)
22 KOG0618 Serine/threonine phosp 98.0 1.3E-06 2.9E-11 82.5 0.0 89 156-251 377-465 (1081)
23 KOG0618 Serine/threonine phosp 97.9 1.9E-06 4.1E-11 81.5 0.2 86 164-255 46-131 (1081)
24 KOG4194 Membrane glycoprotein 97.9 1.3E-05 2.8E-10 72.8 5.0 105 142-251 126-234 (873)
25 PRK15370 E3 ubiquitin-protein 97.9 4.3E-05 9.3E-10 73.1 8.7 100 143-256 180-280 (754)
26 KOG4579 Leucine-rich repeat (L 97.9 2.3E-06 5E-11 63.8 -0.0 86 164-254 54-139 (177)
27 KOG4194 Membrane glycoprotein 97.9 8.4E-06 1.8E-10 73.9 3.0 87 164-255 174-262 (873)
28 KOG1259 Nischarin, modulator o 97.9 3.6E-06 7.8E-11 70.6 0.4 84 164-254 308-415 (490)
29 KOG4658 Apoptotic ATPase [Sign 97.8 1.4E-05 3.1E-10 77.5 2.7 102 141-248 545-652 (889)
30 KOG1259 Nischarin, modulator o 97.7 1E-05 2.2E-10 67.9 1.0 83 164-253 285-389 (490)
31 cd00116 LRR_RI Leucine-rich re 97.7 7.3E-05 1.6E-09 64.2 5.6 87 164-250 166-262 (319)
32 cd00116 LRR_RI Leucine-rich re 97.7 5.9E-05 1.3E-09 64.8 4.8 107 143-251 110-234 (319)
33 PRK15387 E3 ubiquitin-protein 97.6 8.2E-05 1.8E-09 71.2 5.2 57 191-251 402-458 (788)
34 PRK15387 E3 ubiquitin-protein 97.6 0.00015 3.3E-09 69.3 6.9 109 141-255 222-359 (788)
35 COG4886 Leucine-rich repeat (L 97.6 3.2E-05 7E-10 68.8 2.2 86 164-255 117-203 (394)
36 KOG4237 Extracellular matrix p 97.6 1.3E-05 2.8E-10 69.4 -0.4 84 164-251 68-153 (498)
37 KOG0532 Leucine-rich repeat (L 97.5 2.6E-05 5.7E-10 70.5 0.6 71 183-255 181-251 (722)
38 KOG0532 Leucine-rich repeat (L 97.5 1.5E-05 3.3E-10 72.0 -1.1 86 164-256 144-229 (722)
39 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.3E-09 69.8 3.9 84 160-249 146-231 (699)
40 KOG4237 Extracellular matrix p 97.3 7.1E-05 1.5E-09 65.0 0.9 71 183-253 266-337 (498)
41 PRK15386 type III secretion pr 97.2 0.0011 2.3E-08 58.8 7.0 98 142-254 53-172 (426)
42 COG4886 Leucine-rich repeat (L 97.0 0.00034 7.3E-09 62.2 2.3 71 185-256 110-181 (394)
43 KOG3665 ZYG-1-like serine/thre 97.0 0.00032 7E-09 66.6 2.0 82 164-249 123-206 (699)
44 KOG4579 Leucine-rich repeat (L 97.0 0.00023 5E-09 53.3 0.5 70 185-255 47-117 (177)
45 PF00560 LRR_1: Leucine Rich R 96.9 0.0003 6.6E-09 35.3 0.5 18 216-233 2-19 (22)
46 PRK15386 type III secretion pr 96.8 0.0016 3.6E-08 57.7 4.8 81 158-256 48-133 (426)
47 PF00560 LRR_1: Leucine Rich R 96.6 0.00081 1.8E-08 33.7 0.9 22 192-213 1-22 (22)
48 KOG3207 Beta-tubulin folding c 96.6 0.00083 1.8E-08 59.2 1.5 108 141-254 197-317 (505)
49 KOG1909 Ran GTPase-activating 96.6 0.0027 5.9E-08 54.4 4.4 87 164-250 186-282 (382)
50 KOG0531 Protein phosphatase 1, 96.6 0.001 2.2E-08 59.7 1.8 88 158-254 91-178 (414)
51 KOG1644 U2-associated snRNP A' 96.5 0.0036 7.8E-08 49.9 4.3 86 156-247 58-149 (233)
52 KOG1909 Ran GTPase-activating 96.5 0.003 6.4E-08 54.2 4.1 91 159-251 154-254 (382)
53 PF13504 LRR_7: Leucine rich r 96.4 0.0016 3.6E-08 30.4 1.0 16 239-254 2-17 (17)
54 KOG0531 Protein phosphatase 1, 96.2 0.002 4.3E-08 57.9 1.5 104 141-253 95-201 (414)
55 KOG2982 Uncharacterized conser 96.2 0.0024 5.2E-08 53.9 1.6 89 160-252 69-160 (418)
56 KOG1859 Leucine-rich repeat pr 96.0 0.0011 2.3E-08 62.1 -1.3 81 161-251 186-267 (1096)
57 KOG3207 Beta-tubulin folding c 96.0 0.002 4.4E-08 56.8 0.4 88 160-252 195-285 (505)
58 PF13504 LRR_7: Leucine rich r 95.8 0.0057 1.2E-07 28.5 1.3 16 215-230 2-17 (17)
59 KOG2739 Leucine-rich acidic nu 95.5 0.01 2.2E-07 49.1 2.4 91 156-249 59-154 (260)
60 KOG1859 Leucine-rich repeat pr 95.0 0.0035 7.6E-08 58.8 -1.6 70 182-253 178-247 (1096)
61 smart00370 LRR Leucine-rich re 94.9 0.016 3.5E-07 30.1 1.3 19 214-232 2-20 (26)
62 smart00369 LRR_TYP Leucine-ric 94.9 0.016 3.5E-07 30.1 1.3 19 214-232 2-20 (26)
63 smart00370 LRR Leucine-rich re 94.6 0.031 6.7E-07 28.9 2.1 20 237-256 1-20 (26)
64 smart00369 LRR_TYP Leucine-ric 94.6 0.031 6.7E-07 28.9 2.1 20 237-256 1-20 (26)
65 KOG2739 Leucine-rich acidic nu 94.6 0.016 3.4E-07 47.9 1.3 67 185-253 59-131 (260)
66 KOG1644 U2-associated snRNP A' 94.5 0.042 9.1E-07 44.0 3.3 82 164-252 43-127 (233)
67 KOG2982 Uncharacterized conser 94.0 0.035 7.6E-07 47.1 2.2 78 167-250 49-133 (418)
68 KOG2123 Uncharacterized conser 93.2 0.0097 2.1E-07 49.9 -2.4 77 164-248 20-98 (388)
69 PF13306 LRR_5: Leucine rich r 92.0 0.33 7.2E-06 35.4 4.8 103 142-254 13-118 (129)
70 smart00364 LRR_BAC Leucine-ric 90.5 0.17 3.7E-06 26.3 1.3 17 239-255 3-19 (26)
71 PF13306 LRR_5: Leucine rich r 90.3 1.3 2.8E-05 32.2 6.5 62 183-246 27-89 (129)
72 KOG0473 Leucine-rich repeat pr 90.2 0.011 2.4E-07 48.3 -5.0 64 185-249 59-122 (326)
73 KOG0473 Leucine-rich repeat pr 88.5 0.015 3.3E-07 47.5 -5.4 69 187-256 38-106 (326)
74 KOG2120 SCF ubiquitin ligase, 84.7 0.26 5.6E-06 42.0 -0.3 62 185-248 307-373 (419)
75 KOG2120 SCF ubiquitin ligase, 84.4 0.14 3.1E-06 43.5 -1.9 66 184-249 203-271 (419)
76 COG5238 RNA1 Ran GTPase-activa 84.3 2.3 5E-05 36.0 5.1 47 156-203 86-132 (388)
77 smart00365 LRR_SD22 Leucine-ri 80.1 1.3 2.8E-05 23.0 1.4 16 237-252 1-16 (26)
78 COG5238 RNA1 Ran GTPase-activa 80.0 2.9 6.2E-05 35.5 4.1 107 141-249 120-253 (388)
79 KOG3864 Uncharacterized conser 79.7 0.84 1.8E-05 36.7 0.9 34 190-223 150-185 (221)
80 PF13516 LRR_6: Leucine Rich r 78.0 1.2 2.6E-05 22.3 0.9 14 238-251 2-15 (24)
81 KOG2123 Uncharacterized conser 74.4 0.47 1E-05 40.1 -1.9 62 189-253 17-78 (388)
82 KOG3864 Uncharacterized conser 71.8 1.2 2.5E-05 35.9 -0.2 62 185-247 119-185 (221)
83 KOG1947 Leucine rich repeat pr 69.1 4.2 9.1E-05 36.6 2.8 89 159-249 211-306 (482)
84 smart00368 LRR_RI Leucine rich 64.1 5.3 0.00011 20.9 1.5 13 238-250 2-14 (28)
85 smart00367 LRR_CC Leucine-rich 54.6 9.2 0.0002 19.4 1.4 12 238-249 2-13 (26)
86 PF14162 YozD: YozD-like prote 53.0 17 0.00036 22.2 2.4 29 68-96 22-52 (57)
87 PF00610 DEP: Domain found in 49.6 60 0.0013 21.0 5.1 42 57-100 17-60 (74)
88 KOG4341 F-box protein containi 45.7 3.7 7.9E-05 36.7 -1.7 40 186-225 185-227 (483)
89 PRK04841 transcriptional regul 45.6 51 0.0011 32.6 6.1 82 26-122 250-332 (903)
90 cd04443 DEP_GPR155 DEP (Dishev 44.6 64 0.0014 21.9 4.6 39 59-99 32-70 (83)
91 cd04448 DEP_PIKfyve DEP (Dishe 44.4 63 0.0014 21.8 4.6 40 59-100 30-69 (81)
92 cd04441 DEP_2_DEP6 DEP (Dishev 44.1 64 0.0014 22.1 4.6 39 59-99 34-72 (85)
93 smart00049 DEP Domain found in 40.8 74 0.0016 20.7 4.5 40 58-99 21-60 (77)
94 KOG1947 Leucine rich repeat pr 40.2 20 0.00043 32.2 2.1 83 160-246 241-329 (482)
95 cd04440 DEP_2_P-Rex DEP (Dishe 38.6 88 0.0019 21.8 4.6 38 60-99 40-77 (93)
96 PF13463 HTH_27: Winged helix 38.5 76 0.0016 19.8 4.2 33 78-110 32-64 (68)
97 PF04433 SWIRM: SWIRM domain; 36.3 16 0.00035 24.8 0.7 38 33-70 10-49 (86)
98 PF15385 SARG: Specifically an 35.4 19 0.0004 33.2 1.1 16 34-49 7-22 (497)
99 PF07725 LRR_3: Leucine Rich R 34.0 22 0.00049 17.1 0.8 17 216-232 2-18 (20)
100 cd04439 DEP_1_P-Rex DEP (Dishe 32.3 1.4E+02 0.0029 20.2 4.7 40 58-99 29-68 (81)
101 cd04442 DEP_1_DEP6 DEP (Dishev 31.3 1.3E+02 0.0028 20.4 4.4 38 60-99 31-68 (82)
102 PF12802 MarR_2: MarR family; 28.8 1.4E+02 0.0031 18.1 5.8 59 37-103 2-60 (62)
103 cd04444 DEP_PLEK2 DEP (Disheve 28.3 85 0.0018 22.6 3.3 39 60-100 34-72 (109)
104 KOG4308 LRR-containing protein 26.9 5.5 0.00012 36.6 -3.7 85 164-249 205-301 (478)
105 COG5626 Uncharacterized small 25.4 74 0.0016 21.8 2.3 21 63-83 52-72 (97)
106 cd04449 DEP_DEPDC5-like DEP (D 24.3 2.3E+02 0.005 19.0 4.8 39 60-99 32-70 (83)
107 cd04371 DEP DEP domain, named 22.8 2.2E+02 0.0048 18.4 4.5 40 58-99 29-68 (81)
108 PF03297 Ribosomal_S25: S25 ri 22.0 1.6E+02 0.0035 21.0 3.7 25 78-102 73-97 (105)
109 KOG3763 mRNA export factor TAP 21.9 56 0.0012 30.5 1.7 60 164-226 219-282 (585)
110 PF11569 Homez: Homeodomain le 21.7 98 0.0021 19.3 2.3 35 53-94 3-37 (56)
111 PF05402 PqqD: Coenzyme PQQ sy 21.1 1.2E+02 0.0025 19.1 2.7 38 58-95 30-68 (68)
112 COG3432 Predicted transcriptio 21.1 3E+02 0.0066 19.2 6.4 37 78-117 45-81 (95)
113 KOG2297 Predicted translation 20.1 1.3E+02 0.0027 26.2 3.3 41 36-76 126-166 (412)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-43 Score=333.71 Aligned_cols=234 Identities=27% Similarity=0.364 Sum_probs=200.3
Q ss_pred hhHHHhhcccCCC----CCC-CcchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCc-----
Q 037304 8 RNYLFVLDRKFVP----VEA-LDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----- 77 (257)
Q Consensus 8 ~~W~~~l~~~~~~----~~~-~~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~----- 77 (257)
++|+++.+...+. .++ .+.|+++|++|||+||+++|.||||||+|||||+|+++.||.+||||||+.+..
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 4899999976444 222 357999999999999999999999999999999999999999999999998843
Q ss_pred HHHHHHHHHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhc-----cCCeeeceecCC------CCCccCcEEEE
Q 037304 78 EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAF-----EGEFVISPIMDQ------EVKLWENVKRF 146 (257)
Q Consensus 78 ~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~-----~e~~~~~~~~~~------~~~~~~~~r~L 146 (257)
++.|+.|+++|+++||++..+.. ++..+|+|||+|||+|.++|+ +++.+. ..+. +..+|..+|++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCccccccccchhheeEE
Confidence 89999999999999999987754 667899999999999999999 676544 2221 11223788999
Q ss_pred EEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC
Q 037304 147 TAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP 224 (257)
Q Consensus 147 ~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~ 224 (257)
+++++.... +.....+ +++||.+..+... .......+|..|+.||||||++|. +.++|++|++|.|||||++++|
T Consensus 529 s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENP-KLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred EEeccchhhccCCCCCC-ccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 999998765 5666777 8999999987531 234667889999999999999887 8899999999999999999999
Q ss_pred CccccchhHHhcCccccEeeccCCC
Q 037304 225 SLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 225 ~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
.++.||.++ ++|..|++|++..+.
T Consensus 606 ~I~~LP~~l-~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 606 GISHLPSGL-GNLKKLIYLNLEVTG 629 (889)
T ss_pred CccccchHH-HHHHhhheecccccc
Confidence 999999999 999999999999876
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.6e-22 Score=196.94 Aligned_cols=102 Identities=10% Similarity=-0.036 Sum_probs=81.2
Q ss_pred chhhHHHhhcccCCCCCCCcchHHHHHHhHhhhhH-HHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHH
Q 037304 6 VRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLF-YLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERY 84 (257)
Q Consensus 6 ~~~~W~~~l~~~~~~~~~~~~i~~~L~lSY~~L~~-~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~ 84 (257)
.+++|+.++++..+ ....+|.++|++||++|++ ..|.||+|||+||.+..++ .+..|+|.+.... +..
T Consensus 403 ~~~~W~~~l~~L~~--~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------~~~ 471 (1153)
T PLN03210 403 DKEDWMDMLPRLRN--GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------NIG 471 (1153)
T ss_pred CHHHHHHHHHHHHh--CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------hhC
Confidence 46899999998632 2235899999999999987 5999999999999987553 4667777765432 234
Q ss_pred HHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhccC
Q 037304 85 LEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEG 125 (257)
Q Consensus 85 ~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~~e 125 (257)
++.|+++|||+... ..++|||++|+||+.+++++
T Consensus 472 l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 472 LKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhh
Confidence 89999999998743 35899999999999999765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.15 E-value=8.2e-12 Score=106.18 Aligned_cols=70 Identities=29% Similarity=0.422 Sum_probs=56.7
Q ss_pred hhhHHHhhcccCCCCC----CCcchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCC
Q 037304 7 RRNYLFVLDRKFVPVE----ALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNN 76 (257)
Q Consensus 7 ~~~W~~~l~~~~~~~~----~~~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~ 76 (257)
.++|+.+++...+... ....+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||.+.
T Consensus 212 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 212 VDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 4679988875422221 246799999999999999999999999999999999999999999999999764
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=9e-10 Score=71.34 Aligned_cols=60 Identities=32% Similarity=0.328 Sum_probs=53.5
Q ss_pred cccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304 191 KFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l 250 (257)
++|++|++++|.+..+| ..+..+++|++|++++|.++.+|+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999887 5778899999999999999999886669999999999999874
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-10 Score=89.58 Aligned_cols=92 Identities=22% Similarity=0.094 Sum_probs=53.8
Q ss_pred cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHH
Q 037304 157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLL 234 (257)
Q Consensus 157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~ 234 (257)
....++ +||.|.+..+.. ...|..|+.++.|++|||..|.+. .+|..+..|.-||.|.|+.|.++-+|+.+
T Consensus 74 ~issl~-klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv- 146 (264)
T KOG0617|consen 74 SISSLP-KLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV- 146 (264)
T ss_pred hhhhch-hhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-
Confidence 334555 666665544433 356777888888888888876654 44555444444444455555555555555
Q ss_pred hcCccccEeeccCCCCCcCCC
Q 037304 235 NSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 235 ~~L~~L~~L~l~~~~l~~lP~ 255 (257)
|+|.+||.|.+++|.+-++|.
T Consensus 147 g~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhcceeEEeeccCchhhCcH
Confidence 555555555555555555554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-10 Score=88.88 Aligned_cols=112 Identities=21% Similarity=0.131 Sum_probs=94.8
Q ss_pred CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 218 (257)
.++|++-+.-+.... .....++ .|..|.+..+.. ....+|..|-.|..||.|.|+.|.++-+|..+++|++|+.
T Consensus 79 ~klr~lnvgmnrl~~lprgfgs~p-~levldltynnl---~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 79 PKLRILNVGMNRLNILPRGFGSFP-ALEVLDLTYNNL---NENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhhhheecchhhhhcCccccCCCc-hhhhhhcccccc---ccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 667777666555443 2445677 888888877665 4566778888899999999999999999999999999999
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCCC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF 257 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i 257 (257)
|.++.|.+-++|..+ |.|..|+.|.+.+|+++.+|+++
T Consensus 155 l~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred EeeccCchhhCcHHH-HHHHHHHHHhcccceeeecChhh
Confidence 999999999999999 99999999999999999999863
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.78 E-value=6.3e-10 Score=100.64 Aligned_cols=111 Identities=20% Similarity=0.161 Sum_probs=63.5
Q ss_pred CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 218 (257)
.++.||++..+.... -+..+++ .||++++..+... ..+++ +-+-.++.|.+|||+.|++.+.|..+..-+++-.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LK--nsGiP-~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLK--NSGIP-TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccc--cCCCC-chhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 445556555554332 3455666 7777776665543 22333 3333566666666666666666666666666666
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
|+||+|+|+++|.++|-+|.-|-.|||++|++..||+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence 6666666666666554555666666666665555554
No 8
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=7.5e-08 Score=90.44 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred ccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCccccE
Q 037304 165 LHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYT 242 (257)
Q Consensus 165 Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~ 242 (257)
++.|.+.++.. ....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+++ ++|.+|++
T Consensus 420 v~~L~L~~n~L----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGL----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCc----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCE
Confidence 45555555443 2345667788888888888888876 77888888888888888888876 678888 88888888
Q ss_pred eeccCCCCC-cCCC
Q 037304 243 LDKPFSYID-HTVD 255 (257)
Q Consensus 243 L~l~~~~l~-~lP~ 255 (257)
|+|++|.+. .+|.
T Consensus 495 L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 495 LNLNGNSLSGRVPA 508 (623)
T ss_pred EECcCCcccccCCh
Confidence 888888755 6665
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.60 E-value=8.9e-08 Score=94.53 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=35.0
Q ss_pred hHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCC
Q 037304 184 EKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 184 ~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l 250 (257)
|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++.+|++|++++|.+
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNL 248 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCcee
Confidence 344455555555555555543 34555555555555555555543 455555 5555555555555553
No 10
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.55 E-value=6.1e-08 Score=58.19 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=17.9
Q ss_pred CCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 215 LLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 215 ~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
+|++|++++|.++.+|+.+ ++|++|++|++++|++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence 4445555555555555444 5555555555555544443
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.54 E-value=1.5e-07 Score=92.95 Aligned_cols=81 Identities=26% Similarity=0.288 Sum_probs=37.6
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~ 241 (257)
+|++|.+.++... ...+..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++.+|+
T Consensus 141 ~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 215 (968)
T PLN00113 141 NLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLK 215 (968)
T ss_pred CCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCcc
Confidence 4555544444321 123344444555555555554433 34444555555555555544432 344444 5555555
Q ss_pred EeeccCCC
Q 037304 242 TLDKPFSY 249 (257)
Q Consensus 242 ~L~l~~~~ 249 (257)
+|++++|.
T Consensus 216 ~L~L~~n~ 223 (968)
T PLN00113 216 WIYLGYNN 223 (968)
T ss_pred EEECcCCc
Confidence 55555444
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=1.6e-07 Score=56.32 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=35.9
Q ss_pred cccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccch
Q 037304 191 KFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPS 231 (257)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~ 231 (257)
++|++|++++|+++.+|..+++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999999999999999999999999999987764
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.6e-07 Score=58.96 Aligned_cols=59 Identities=29% Similarity=0.202 Sum_probs=51.5
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSL 226 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 226 (257)
+|++|.+.++.. ..+.+..|.++++|++|++++|.+..+| ..+..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKL----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTE----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCC----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 788898888764 3567789999999999999999999886 6789999999999999875
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.38 E-value=4.4e-08 Score=88.99 Aligned_cols=72 Identities=24% Similarity=0.113 Sum_probs=40.5
Q ss_pred chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
+|.++..+.+|+-+||+.|.++.+|+.+.++.+||.|+||+|.+++|-..+ +.-.+|++|+++.|++..||+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhccchH
Confidence 345555566666666666666666666666666666666665555554444 444445555555544444443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.38 E-value=2.6e-08 Score=85.98 Aligned_cols=66 Identities=33% Similarity=0.234 Sum_probs=45.2
Q ss_pred chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l 250 (257)
+.+..+.+.+|.+|||..|+++++|+.++.|.+|.+||+++|.++.+|.++ |+| +|+.|-+.||.+
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCch
Confidence 344555667777777777777777777777777777777777777777777 776 777776666654
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.36 E-value=2.5e-08 Score=86.06 Aligned_cols=93 Identities=22% Similarity=0.147 Sum_probs=74.1
Q ss_pred cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcC-CCCCCcEEEccCCCccccchhHHh
Q 037304 157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIE-NLFLLRYLHLNIPSLKSLPSSLLN 235 (257)
Q Consensus 157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~l~~lP~~i~~ 235 (257)
+...+. .+.-|.+..+.. .+.| .|.++..|.-|+++.|+++.+|..++ .|.+|..||++.|.+++.|..+ +
T Consensus 201 ~lg~l~-~L~~LyL~~Nki-----~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-c 272 (565)
T KOG0472|consen 201 ELGGLE-SLELLYLRRNKI-----RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-C 272 (565)
T ss_pred hhcchh-hhHHHHhhhccc-----ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-H
Confidence 334444 454444444443 2343 67888888888888888888998877 7999999999999999999999 9
Q ss_pred cCccccEeeccCCCCCcCCCCC
Q 037304 236 SLLNLYTLDKPFSYIDHTVDEF 257 (257)
Q Consensus 236 ~L~~L~~L~l~~~~l~~lP~~i 257 (257)
.|++|..||+++|.+..+|.++
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred HhhhhhhhcccCCccccCCccc
Confidence 9999999999999999999753
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=4.5e-07 Score=71.26 Aligned_cols=102 Identities=21% Similarity=0.123 Sum_probs=31.0
Q ss_pred EEEEEEeCCCCccc-ccc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcC-CCCCCcEE
Q 037304 143 VKRFTAHGNLNDFA-FLD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIE-NLFLLRYL 219 (257)
Q Consensus 143 ~r~L~~~~~~~~~~-~~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~-~L~~L~~L 219 (257)
.|.|.+.++..... ... .+. ++++|.+.++.... + +.+..++.|+.|++++|.++.+++.+. .+++|+.|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~-~L~~L~Ls~N~I~~----l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLD-KLEVLDLSNNQITK----L--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------S--TT-T-T--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccchhhhhc-CCCEEECCCCCCcc----c--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45555655554432 222 245 66677666665531 1 345556677777777777766654442 46677777
Q ss_pred EccCCCccccc--hhHHhcCccccEeeccCCCCCc
Q 037304 220 HLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDH 252 (257)
Q Consensus 220 ~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~ 252 (257)
.+++|.+..+- ..+ ..+++|++|++.+|.+.+
T Consensus 94 ~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 94 YLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp E-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG
T ss_pred ECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc
Confidence 77776665432 234 566677777777665543
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=5.3e-07 Score=70.83 Aligned_cols=88 Identities=20% Similarity=0.124 Sum_probs=31.6
Q ss_pred ccCCCCCccEEEeecCCCCCCCcccchHhhc-cCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304 158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICK-MFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS 236 (257)
Q Consensus 158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~ 236 (257)
..+.. ++|.|.+.++.... + +.+. .+.+|++|+|++|.++.++ .+..+++|+.|++++|.++.+++.+...
T Consensus 15 ~~n~~-~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPV-KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccc-cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 33445 78889998887741 1 2344 5788999999999999886 4888999999999999999998766246
Q ss_pred CccccEeeccCCCCCcC
Q 037304 237 LLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~l 253 (257)
+++|+.|++++|++.++
T Consensus 87 lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDL 103 (175)
T ss_dssp -TT--EEE-TTS---SC
T ss_pred CCcCCEEECcCCcCCCh
Confidence 99999999999987655
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=3.2e-06 Score=79.55 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=83.1
Q ss_pred EEEEEEeCCCCc--c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcE
Q 037304 143 VKRFTAHGNLND--F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRY 218 (257)
Q Consensus 143 ~r~L~~~~~~~~--~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~ 218 (257)
+..|.+..+... . .....+. +|+.|.+.++... ...|..+..+++|+.|+|++|.+. .+|..+++|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 445555554433 1 3455678 9999999888653 456778999999999999999988 78999999999999
Q ss_pred EEccCCCcc-ccchhHHhcC-ccccEeeccCCC-CCcCC
Q 037304 219 LHLNIPSLK-SLPSSLLNSL-LNLYTLDKPFSY-IDHTV 254 (257)
Q Consensus 219 L~l~~~~l~-~lP~~i~~~L-~~L~~L~l~~~~-l~~lP 254 (257)
|+|++|.+. .+|..+ +.+ .++..+++.+|. +...|
T Consensus 495 L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 495 LNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence 999999976 899998 764 578899998876 44443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=3.9e-06 Score=84.33 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=30.8
Q ss_pred hccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC-CccccchhHHhcCccccEeeccCCC
Q 037304 187 CKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP-SLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 187 ~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
+..+++|+.|+|++|. +..+|.+++++++|++|++++| .++.+|..+ ++.+|++|++++|.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS 715 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence 3444555555555544 4455555555555555555554 245555543 44555555555543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.13 E-value=6.2e-06 Score=78.73 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=39.1
Q ss_pred ccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 192 FLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
+|+.|+|++|.+..+|..+. .+|++|++++|.++.+|..+ . .+|++|++++|++..+|.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc-C--CCCcEEECCCCccccCcc
Confidence 46666666666666665554 36777777777777777666 3 467777777777766664
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.99 E-value=1.3e-06 Score=82.46 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=68.2
Q ss_pred ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHh
Q 037304 156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLN 235 (257)
Q Consensus 156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~ 235 (257)
+...++. +||.|.+..+..+ .++...+.++..|+.|+|+||.++.+|..+.++..|+.|...+|.+..+| .+ .
T Consensus 377 p~l~~~~-hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~-~ 449 (1081)
T KOG0618|consen 377 PVLVNFK-HLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL-A 449 (1081)
T ss_pred hhhcccc-ceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh-h
Confidence 5666777 8888888877653 46667778888888888888888888888888888888777777777777 55 6
Q ss_pred cCccccEeeccCCCCC
Q 037304 236 SLLNLYTLDKPFSYID 251 (257)
Q Consensus 236 ~L~~L~~L~l~~~~l~ 251 (257)
+++.|+++|++.|.++
T Consensus 450 ~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hcCcceEEecccchhh
Confidence 7788888888777654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.95 E-value=1.9e-06 Score=81.46 Aligned_cols=86 Identities=28% Similarity=0.272 Sum_probs=59.7
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
+|++|.+.++... ..|..+..+..|+.|.++.|-+..+|.+++++.+|+||+|.+|.+..+|.++ ..+++|++|
T Consensus 46 ~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQYL 119 (1081)
T ss_pred eeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhccccc
Confidence 4666666666543 2344556666777777777777777777777777777777777777777777 777777777
Q ss_pred eccCCCCCcCCC
Q 037304 244 DKPFSYIDHTVD 255 (257)
Q Consensus 244 ~l~~~~l~~lP~ 255 (257)
|++.|.+...|.
T Consensus 120 dlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 120 DLSFNHFGPIPL 131 (1081)
T ss_pred ccchhccCCCch
Confidence 777777666664
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.93 E-value=1.3e-05 Score=72.75 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=63.6
Q ss_pred cEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCc
Q 037304 142 NVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLR 217 (257)
Q Consensus 142 ~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 217 (257)
.+.+|.+..+.... .+...++ .+|+|.++.+... .+....|..-.+++.|+|++|.++.+ -..+..+.+|.
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 34555555544332 2334444 5666655555432 23334555555666777777776655 35566677777
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
.|.|+.|+++.||.-+|.+|++|+.|+|..|.+.
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 7777777777787777566888888888777643
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.92 E-value=4.3e-05 Score=73.08 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=73.4
Q ss_pred EEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEc
Q 037304 143 VKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHL 221 (257)
Q Consensus 143 ~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l 221 (257)
...+.+...... +|.. -.+ .++.|.+.++... .++ ..+ .++|+.|++++|.++.+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip~-~L~~L~Ls~N~Lt----sLP-~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IPE-QITTLILDNNELK----SLP-ENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcCcCCcc-ccc-CCcEEEecCCCCC----cCC-hhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 445555544332 2321 124 7889999888654 222 222 2589999999999999998765 47999999
Q ss_pred cCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 222 NIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 222 ~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
++|.+..+|.++ . .+|++|++++|++..+|..
T Consensus 249 s~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 249 SINRITELPERL-P--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred cCCccCcCChhH-h--CCCCEEECcCCccCccccc
Confidence 999999999988 5 5899999999999888864
No 26
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=2.3e-06 Score=63.78 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=67.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
.|.+..+.++... .+++.+-.+++.+..|+|++|.+.++|..+..++.||.|+++.|.+...|.-| ..|.+|-.|
T Consensus 54 el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~L 128 (177)
T KOG4579|consen 54 ELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDML 128 (177)
T ss_pred eEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHh
Confidence 4555555555543 34555556677888889999999999988888999999999999988899988 778888888
Q ss_pred eccCCCCCcCC
Q 037304 244 DKPFSYIDHTV 254 (257)
Q Consensus 244 ~l~~~~l~~lP 254 (257)
|..+|...++|
T Consensus 129 ds~~na~~eid 139 (177)
T KOG4579|consen 129 DSPENARAEID 139 (177)
T ss_pred cCCCCccccCc
Confidence 88888777776
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.88 E-value=8.4e-06 Score=73.89 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=48.5
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCcccc-chhHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSL-PSSLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~l-P~~i~~~L~~L~ 241 (257)
++..|.+.++... .+-...|.++.+|.+|.|+.|.++.+| .++.+|++|+.|+|..|.++.. -..+ ..|.+|+
T Consensus 174 ni~~L~La~N~It----~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~ 248 (873)
T KOG4194|consen 174 NIKKLNLASNRIT----TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQ 248 (873)
T ss_pred CceEEeecccccc----ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh-cCchhhh
Confidence 5556666655543 233345556666666666666666665 3344466666666666665544 2233 5666666
Q ss_pred EeeccCCCCCcCCC
Q 037304 242 TLDKPFSYIDHTVD 255 (257)
Q Consensus 242 ~L~l~~~~l~~lP~ 255 (257)
.|.|..|.+..|-+
T Consensus 249 nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 249 NLKLQRNDISKLDD 262 (873)
T ss_pred hhhhhhcCcccccC
Confidence 66666665555544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=3.6e-06 Score=70.57 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=51.1
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh----------------------cCCCCCCcEEEc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE----------------------IENLFLLRYLHL 221 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~----------------------i~~L~~L~~L~l 221 (257)
++|.|.++.+... .. ..+..+.+|..|||++|.+.++-.. +++|-+|.+|++
T Consensus 308 kir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 308 KLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL 381 (490)
T ss_pred ceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence 7888888777653 12 3366777777777777765433222 344455666666
Q ss_pred cCCCccccc--hhHHhcCccccEeeccCCCCCcCC
Q 037304 222 NIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 222 ~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|+++.+- .+| |+|+.|+++.|.+|.+..+|
T Consensus 382 ~~N~Ie~ldeV~~I-G~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 382 SSNQIEELDEVNHI-GNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccchhhHHHhccc-ccccHHHHHhhcCCCccccc
Confidence 666666443 356 66666666666666655554
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.76 E-value=1.4e-05 Score=77.54 Aligned_cols=102 Identities=25% Similarity=0.320 Sum_probs=82.8
Q ss_pred CcEEEEEEeCCCC---ccc--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCC
Q 037304 141 ENVKRFTAHGNLN---DFA--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~---~~~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~ 215 (257)
.+++-|.+..+.. ..+ ....++ .||.|.+.++... ..+|..++.+-+||.|+++++.+..+|.++++|+.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l----~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSL----SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCcc----CcCChHHhhhhhhhcccccCCCccccchHHHHHHh
Confidence 4577777777642 222 266788 9999999986542 45788999999999999999999999999999999
Q ss_pred CcEEEccCCC-ccccchhHHhcCccccEeeccCC
Q 037304 216 LRYLHLNIPS-LKSLPSSLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 216 L~~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~ 248 (257)
|.||++..+. +..+|.-+ +.|++|++|.+...
T Consensus 620 L~~Lnl~~~~~l~~~~~i~-~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGIL-LELQSLRVLRLPRS 652 (889)
T ss_pred hheeccccccccccccchh-hhcccccEEEeecc
Confidence 9999999986 55555555 77999999998764
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=1e-05 Score=67.92 Aligned_cols=83 Identities=23% Similarity=0.104 Sum_probs=62.9
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccc-------------
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLP------------- 230 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP------------- 230 (257)
.|.++.++++... ...++..-.+.+|+|+++.|.+..+-. +..|.+|..|+|++|.+.++-
T Consensus 285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 5667777776553 456777788999999999999876543 888899999999987664332
Q ss_pred ---------hhHHhcCccccEeeccCCCCCcC
Q 037304 231 ---------SSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 231 ---------~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
+++ ++|++|..||+++|+++++
T Consensus 359 La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 359 LAQNKIETLSGL-RKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hhhhhHhhhhhh-HhhhhheeccccccchhhH
Confidence 345 7888888999988876654
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.67 E-value=7.3e-05 Score=64.17 Aligned_cols=87 Identities=23% Similarity=0.101 Sum_probs=40.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc-cchhHHh--
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS-LPSSLLN-- 235 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-lP~~i~~-- 235 (257)
++++|.+.++..........+..+..+++|+.|++++|.+. .++..+..+++|++|++++|.+.. -+..+..
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 55555555544321000112223344456666666666543 233444555666666666665542 1111101
Q ss_pred --cCccccEeeccCCCC
Q 037304 236 --SLLNLYTLDKPFSYI 250 (257)
Q Consensus 236 --~L~~L~~L~l~~~~l 250 (257)
....|+.|++++|.+
T Consensus 246 ~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 246 LSPNISLLTLSLSCNDI 262 (319)
T ss_pred hccCCCceEEEccCCCC
Confidence 125666666666654
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.66 E-value=5.9e-05 Score=64.75 Aligned_cols=107 Identities=18% Similarity=0.062 Sum_probs=73.6
Q ss_pred EEEEEEeCCCCcc-------ccccCC-CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchh
Q 037304 143 VKRFTAHGNLNDF-------AFLDHF-DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFE 209 (257)
Q Consensus 143 ~r~L~~~~~~~~~-------~~~~~~-~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~ 209 (257)
+++|.+..+.... ...... + +++.|.+.++.............+..++.|+.|++++|.+. .++..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 7788887765441 122344 5 78888888776531111223456677788999999988876 34455
Q ss_pred cCCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304 210 IENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 210 i~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+..+++|++|++++|.+. .++..+ ..+++|++|++++|.+.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCc
Confidence 666678999999988764 455566 77888999999998765
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.60 E-value=8.2e-05 Score=71.17 Aligned_cols=57 Identities=23% Similarity=0.103 Sum_probs=46.9
Q ss_pred cccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 191 KFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|+.|++++|.+..+|... .+|++|++++|.++.+|.++ +++.+|++|++++|.+.
T Consensus 402 s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESL-IHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHH-hhccCCCeEECCCCCCC
Confidence 46777788888877777532 46788999999999999999 99999999999999875
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.60 E-value=0.00015 Score=69.34 Aligned_cols=109 Identities=17% Similarity=-0.038 Sum_probs=54.9
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcc------------cchHhhccCcccceEEEeCCCCccCc
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPT------------YCEKICKMFKFLRVLDLGSLVLIRYP 207 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~------------~~~~~~~~l~~Lr~L~L~~~~l~~lp 207 (257)
..++.|.+..+.... +. ..+ +|++|.+.++.....+.. .+...-.....|+.|++++|.++.+|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~--lp~-~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA--LPP-ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred cCCCEEEccCCcCCCCCC--CCC-CCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence 345677776665443 22 234 777887777654321000 00000001123445555555555554
Q ss_pred hhcCCCCCCcEEEccCCCccccchhH--HhcC--------------ccccEeeccCCCCCcCCC
Q 037304 208 FEIENLFLLRYLHLNIPSLKSLPSSL--LNSL--------------LNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 208 ~~i~~L~~L~~L~l~~~~l~~lP~~i--~~~L--------------~~L~~L~l~~~~l~~lP~ 255 (257)
.. +++|++|++++|.++.+|... +..| .+|++|++++|++..+|.
T Consensus 299 ~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 299 VL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred cc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 32 245677777766666554411 0111 367778888877777664
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.59 E-value=3.2e-05 Score=68.77 Aligned_cols=86 Identities=28% Similarity=0.253 Sum_probs=54.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
.+..+.+.++... -.+.....++ +|+.|+++++.+..+|..++.+++|+.|+++.|.+..+|... +.+.+|+.
T Consensus 117 ~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNN 190 (394)
T ss_pred ceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhh
Confidence 4555555555442 1233334442 677777777777766666677777777777777777777766 66777777
Q ss_pred eeccCCCCCcCCC
Q 037304 243 LDKPFSYIDHTVD 255 (257)
Q Consensus 243 L~l~~~~l~~lP~ 255 (257)
|++++|++..+|.
T Consensus 191 L~ls~N~i~~l~~ 203 (394)
T COG4886 191 LDLSGNKISDLPP 203 (394)
T ss_pred eeccCCccccCch
Confidence 7777776666664
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.58 E-value=1.3e-05 Score=69.44 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=68.0
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccC-CCccccchhHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNI-PSLKSLPSSLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~-~~l~~lP~~i~~~L~~L~ 241 (257)
....+.+..+.. ..+++..|+.+++||.|||+.|.|+.+ |+.+..|..|-.|-+-+ |+|+.+|...|+.|..||
T Consensus 68 ~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 444555666654 367889999999999999999999966 89999999887777766 779999999889999999
Q ss_pred EeeccCCCCC
Q 037304 242 TLDKPFSYID 251 (257)
Q Consensus 242 ~L~l~~~~l~ 251 (257)
-|.+.-|++.
T Consensus 144 rLllNan~i~ 153 (498)
T KOG4237|consen 144 RLLLNANHIN 153 (498)
T ss_pred HHhcChhhhc
Confidence 8888776543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.52 E-value=2.6e-05 Score=70.46 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=56.2
Q ss_pred chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++.-+..+.+||.|.+..|.+..+|..++.| .|..||++.|++..||-++ .++.+||+|-|.+|.++.=|.
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f-r~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF-RKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh-hhhhhheeeeeccCCCCCChH
Confidence 4455667777788888888877888877755 4778888888888999998 999999999888887877664
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.50 E-value=1.5e-05 Score=71.95 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=71.6
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
-|+.|++.++... ..|.-++....|..||.+.|.+..+|..+++|..|+.|+++.|.+..+|+.+ + --.|..|
T Consensus 144 pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El-~-~LpLi~l 216 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRL 216 (722)
T ss_pred cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-h-CCceeee
Confidence 4888888887664 3556666788889999999999999999999999999999999999999998 7 4568889
Q ss_pred eccCCCCCcCCCC
Q 037304 244 DKPFSYIDHTVDE 256 (257)
Q Consensus 244 ~l~~~~l~~lP~~ 256 (257)
|++.|++..+|-.
T Consensus 217 DfScNkis~iPv~ 229 (722)
T KOG0532|consen 217 DFSCNKISYLPVD 229 (722)
T ss_pred ecccCceeecchh
Confidence 9999998888854
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=0.00011 Score=69.77 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=49.4
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccc--hhHHhcC
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLP--SSLLNSL 237 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~~L 237 (257)
-+| .||+|.+.+.... .......+.++++|+.||+++++++.+ ..|++|++|+.|.+++-.++.-+ ..+ .+|
T Consensus 146 ~LP-sL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L 219 (699)
T KOG3665|consen 146 MLP-SLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNL 219 (699)
T ss_pred hCc-ccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcc
Confidence 345 7777777665442 122345566777777777777776655 55666666666666654444221 234 566
Q ss_pred ccccEeeccCCC
Q 037304 238 LNLYTLDKPFSY 249 (257)
Q Consensus 238 ~~L~~L~l~~~~ 249 (257)
++|++||+|...
T Consensus 220 ~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 220 KKLRVLDISRDK 231 (699)
T ss_pred cCCCeeeccccc
Confidence 666666666543
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.32 E-value=7.1e-05 Score=64.97 Aligned_cols=71 Identities=25% Similarity=0.164 Sum_probs=58.6
Q ss_pred chHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
+...|.++++||+|+|++|.++.+ +.++..+.+++.|.|..|+++.+-..+|..|..|++|+|.+|+++.+
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 345688899999999999988866 67788888888888888888888888878888888888888887643
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.20 E-value=0.0011 Score=58.84 Aligned_cols=98 Identities=17% Similarity=0.043 Sum_probs=53.7
Q ss_pred cEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCC-CCccCchhcCCCCCCcEEE
Q 037304 142 NVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSL-VLIRYPFEIENLFLLRYLH 220 (257)
Q Consensus 142 ~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~ 220 (257)
..++|.+..+.... ...++.+|++|.+.++... ...|..+ .++|+.|++++| .+..+|.+ |+.|.
T Consensus 53 ~l~~L~Is~c~L~s--LP~LP~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIES--LPVLPNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCcc--cCCCCCCCcEEEccCCCCc----ccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 34566666553322 1234436778877664431 1222222 246777888777 46666654 44444
Q ss_pred ccCCC---ccccchhHHhcCc------------------cccEeeccCCCCCcCC
Q 037304 221 LNIPS---LKSLPSSLLNSLL------------------NLYTLDKPFSYIDHTV 254 (257)
Q Consensus 221 l~~~~---l~~lP~~i~~~L~------------------~L~~L~l~~~~l~~lP 254 (257)
++++. +..+|+++ ..|. +|++|++++|....+|
T Consensus 119 L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP 172 (426)
T PRK15386 119 IKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP 172 (426)
T ss_pred eCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcccCc
Confidence 54432 56677776 6552 6777888777643333
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.04 E-value=0.00034 Score=62.22 Aligned_cols=71 Identities=30% Similarity=0.259 Sum_probs=64.0
Q ss_pred HhhccCcccceEEEeCCCCccCchhcCCCC-CCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 185 KICKMFKFLRVLDLGSLVLIRYPFEIENLF-LLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
.....++.+..|++.++.+.++|..++.+. +|+.|+++++.+..+|..+ +.+++|+.|++++|.+.++|..
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhh
Confidence 344555789999999999999999999995 9999999999999999999 9999999999999999988863
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.00032 Score=66.61 Aligned_cols=82 Identities=22% Similarity=0.141 Sum_probs=65.1
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~ 241 (257)
+||.|.+.|...- ....+...-..+|+|+.|.+.|-.+. ++-.-..++++|+.||+|+|+++.+ .+| ++|+|||
T Consensus 123 nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq 198 (699)
T KOG3665|consen 123 NLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQ 198 (699)
T ss_pred hhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHH
Confidence 7888888775442 44556667778999999999997754 4455566789999999999999998 888 9999999
Q ss_pred EeeccCCC
Q 037304 242 TLDKPFSY 249 (257)
Q Consensus 242 ~L~l~~~~ 249 (257)
+|.+++=.
T Consensus 199 ~L~mrnLe 206 (699)
T KOG3665|consen 199 VLSMRNLE 206 (699)
T ss_pred HHhccCCC
Confidence 99887643
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.96 E-value=0.00023 Score=53.28 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=60.5
Q ss_pred HhhccCcccceEEEeCCCCccCchhcCCC-CCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 185 KICKMFKFLRVLDLGSLVLIRYPFEIENL-FLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L-~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
..+.+...|...+|++|.++.+|+.+... +-+..|++++|.++.+|..+ ..++.|+.|+++.|.+..+|.
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchH
Confidence 34456667888999999999999888765 47899999999999999998 999999999999999877764
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.92 E-value=0.0003 Score=35.31 Aligned_cols=18 Identities=50% Similarity=0.742 Sum_probs=9.9
Q ss_pred CcEEEccCCCccccchhH
Q 037304 216 LRYLHLNIPSLKSLPSSL 233 (257)
Q Consensus 216 L~~L~l~~~~l~~lP~~i 233 (257)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555554
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.84 E-value=0.0016 Score=57.71 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=48.1
Q ss_pred ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC-CccccchhHHh
Q 037304 158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP-SLKSLPSSLLN 235 (257)
Q Consensus 158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~ 235 (257)
...+. +++.|.+.++... . +| .-..+|+.|.+++|. ++.+|..+. .+|++|.+++| .+..+|+++ .
T Consensus 48 ~~~~~-~l~~L~Is~c~L~----s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL-e 115 (426)
T PRK15386 48 IEEAR-ASGRLYIKDCDIE----S-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV-R 115 (426)
T ss_pred HHHhc-CCCEEEeCCCCCc----c-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc-c
Confidence 33456 7777777766432 1 12 112357788887765 667776553 47888888877 577777654 3
Q ss_pred cCccccEeeccCCC---CCcCCCC
Q 037304 236 SLLNLYTLDKPFSY---IDHTVDE 256 (257)
Q Consensus 236 ~L~~L~~L~l~~~~---l~~lP~~ 256 (257)
. |++.++. +.+||++
T Consensus 116 ~------L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 116 S------LEIKGSATDSIKNVPNG 133 (426)
T ss_pred e------EEeCCCCCcccccCcch
Confidence 3 3344332 5667654
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.64 E-value=0.00081 Score=33.72 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=18.7
Q ss_pred ccceEEEeCCCCccCchhcCCC
Q 037304 192 FLRVLDLGSLVLIRYPFEIENL 213 (257)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~L 213 (257)
+|++|++++|.++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887764
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00083 Score=59.17 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=71.6
Q ss_pred CcEEEEEEeCCCCcc----ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCC
Q 037304 141 ENVKRFTAHGNLNDF----AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLF 214 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~----~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~ 214 (257)
..+..|.+..+.... .-...++ .+..|.+..+... ........-++.|+.|||++|.+..++ ..++.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhccccc----ceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 556667776665543 2234566 7777777766421 112233455667888888888877666 5678888
Q ss_pred CCcEEEccCCCcccc--chh-----HHhcCccccEeeccCCCCCcCC
Q 037304 215 LLRYLHLNIPSLKSL--PSS-----LLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 215 ~L~~L~l~~~~l~~l--P~~-----i~~~L~~L~~L~l~~~~l~~lP 254 (257)
.|+.|+++.|++.++ |+. . ..+++|++|++..|++.+.|
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhh-cccccceeeecccCcccccc
Confidence 899999988887743 554 2 36788999999888875544
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.61 E-value=0.0027 Score=54.43 Aligned_cols=87 Identities=21% Similarity=0.101 Sum_probs=52.1
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----ccchhH
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----SLPSSL 233 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~lP~~i 233 (257)
.+..+.+..+.....-.......|..+++|++|||..|.++ .+-..++.+++|+.|+++.|.++ .+-..+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 55666666555432111345566777888888888877765 34455666777777777777654 233333
Q ss_pred HhcCccccEeeccCCCC
Q 037304 234 LNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 234 ~~~L~~L~~L~l~~~~l 250 (257)
-...++|++|++.+|.+
T Consensus 266 ~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEI 282 (382)
T ss_pred hccCCCCceeccCcchh
Confidence 23345666666666653
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.60 E-value=0.001 Score=59.74 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=61.8
Q ss_pred ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304 158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSL 237 (257)
Q Consensus 158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L 237 (257)
...+. .+..+.+.++... -....+..+.+|++|++++|.|..+. .+..++.|+.|++++|.++.++.. ..+
T Consensus 91 l~~~~-~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~--~~l 161 (414)
T KOG0531|consen 91 LSKLK-SLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGL--ESL 161 (414)
T ss_pred ccccc-ceeeeeccccchh-----hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCC--ccc
Confidence 34455 6777777666553 12222667888888888888887664 366677788888888888877554 458
Q ss_pred ccccEeeccCCCCCcCC
Q 037304 238 LNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 238 ~~L~~L~l~~~~l~~lP 254 (257)
.+|+.+++.+|.+..++
T Consensus 162 ~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIE 178 (414)
T ss_pred hhhhcccCCcchhhhhh
Confidence 88888888888766554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0036 Score=49.89 Aligned_cols=86 Identities=22% Similarity=0.133 Sum_probs=65.7
Q ss_pred ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCcEEEccCCCccccch--
Q 037304 156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLRYLHLNIPSLKSLPS-- 231 (257)
Q Consensus 156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lP~-- 231 (257)
.....++ .|.+|.+..+... .+-+..-..+++|.+|.|.+|++.++- +.+..++.|+||.+-+|.++..+.
T Consensus 58 ~~lp~l~-rL~tLll~nNrIt----~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR 132 (233)
T KOG1644|consen 58 DNLPHLP-RLHTLLLNNNRIT----RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR 132 (233)
T ss_pred ccCCCcc-ccceEEecCCcce----eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCce
Confidence 4556777 9999999988865 344444556778999999999987553 346678899999999998875543
Q ss_pred --hHHhcCccccEeeccC
Q 037304 232 --SLLNSLLNLYTLDKPF 247 (257)
Q Consensus 232 --~i~~~L~~L~~L~l~~ 247 (257)
-+ .++++|++||.++
T Consensus 133 ~yvl-~klp~l~~LDF~k 149 (233)
T KOG1644|consen 133 LYVL-YKLPSLRTLDFQK 149 (233)
T ss_pred eEEE-EecCcceEeehhh
Confidence 24 8999999999865
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.53 E-value=0.003 Score=54.23 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=73.1
Q ss_pred cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----c
Q 037304 159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----S 228 (257)
Q Consensus 159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~ 228 (257)
.+.+ +||++++..+.............|+..+.|+.+.++.|.+. -+-..+..++||+.|+|+.|-++ .
T Consensus 154 ~~~~-~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 154 ASKP-KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCCc-ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 3455 99999998887765455667788999999999999999865 23466788999999999998775 4
Q ss_pred cchhHHhcCccccEeeccCCCCC
Q 037304 229 LPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 229 lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+-..+ +.+++|+.|++++|.+.
T Consensus 233 LakaL-~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 233 LAKAL-SSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHh-cccchheeecccccccc
Confidence 56666 78899999999999764
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.40 E-value=0.0016 Score=30.39 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=7.0
Q ss_pred cccEeeccCCCCCcCC
Q 037304 239 NLYTLDKPFSYIDHTV 254 (257)
Q Consensus 239 ~L~~L~l~~~~l~~lP 254 (257)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655554
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.24 E-value=0.002 Score=57.86 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=78.5
Q ss_pred CcEEEEEEeCCCCcc-cc-ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF-AF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 218 (257)
.....+.+..+...- .. ...+. +|+.|.+..+.... -..+..+..|+.|++++|.+..++. +..++.|+.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~-~L~~L~ls~N~I~~------i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLV-NLQVLDLSFNKITK------LEGLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cceeeeeccccchhhcccchhhhh-cchheecccccccc------ccchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 667777777777654 34 56678 99999998887642 1445667779999999999886653 555889999
Q ss_pred EEccCCCccccchh-HHhcCccccEeeccCCCCCcC
Q 037304 219 LHLNIPSLKSLPSS-LLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 219 L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~l 253 (257)
+++++|.+..++.. . ..+.+|+.+.+.+|.+..+
T Consensus 167 l~l~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDEL-SELISLEELDLGGNSIREI 201 (414)
T ss_pred ccCCcchhhhhhhhhh-hhccchHHHhccCCchhcc
Confidence 99999998888773 4 6788999999988875543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0024 Score=53.87 Aligned_cols=89 Identities=20% Similarity=0.059 Sum_probs=64.4
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhc-CCCCCCcEEEccCCCcc--ccchhHHhc
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEI-ENLFLLRYLHLNIPSLK--SLPSSLLNS 236 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~~~l~--~lP~~i~~~ 236 (257)
... .++.+.+.++... ...-...++.+|+.|++|+++.|++.....+. -.+++|+.|-|.|+.+. ..-... ..
T Consensus 69 ~~~-~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~ 144 (418)
T KOG2982|consen 69 SVT-DVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DD 144 (418)
T ss_pred Hhh-hhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hc
Confidence 344 6777777776554 33445577899999999999999876433333 36779999999998764 555566 88
Q ss_pred CccccEeeccCCCCCc
Q 037304 237 LLNLYTLDKPFSYIDH 252 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~ 252 (257)
++.++.|.++.|++.+
T Consensus 145 lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQ 160 (418)
T ss_pred chhhhhhhhccchhhh
Confidence 8888889888886543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.02 E-value=0.0011 Score=62.15 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=61.4
Q ss_pred CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304 161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLN 239 (257)
Q Consensus 161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~ 239 (257)
++ .+++|.+..+.... . ..+..++.|+.|||+.|.+..+|. +...+ +|..|.+++|.+++| .+| .+|.+
T Consensus 186 l~-ale~LnLshNk~~~-----v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gi-e~Lks 255 (1096)
T KOG1859|consen 186 LP-ALESLNLSHNKFTK-----V-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGI-ENLKS 255 (1096)
T ss_pred HH-Hhhhhccchhhhhh-----h-HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhH-Hhhhh
Confidence 44 77888887776531 2 477888999999999999887774 22233 389999999988888 456 79999
Q ss_pred ccEeeccCCCCC
Q 037304 240 LYTLDKPFSYID 251 (257)
Q Consensus 240 L~~L~l~~~~l~ 251 (257)
|+.||+++|-+.
T Consensus 256 L~~LDlsyNll~ 267 (1096)
T KOG1859|consen 256 LYGLDLSYNLLS 267 (1096)
T ss_pred hhccchhHhhhh
Confidence 999999988644
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.002 Score=56.81 Aligned_cols=88 Identities=20% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCCCccccc--hhHHhc
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIPSLKSLP--SSLLNS 236 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~~ 236 (257)
.++ +++.|.+.++.. ...-.......+++|.+|+|.+|. +...-.+...+..|+.|+|++|++-..| .-+ +.
T Consensus 195 ~l~-~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~-~~ 269 (505)
T KOG3207|consen 195 LLS-HLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV-GT 269 (505)
T ss_pred hhh-hhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc-cc
Confidence 445 777777777766 334456677888999999999884 3222222334567899999999887777 556 88
Q ss_pred CccccEeeccCCCCCc
Q 037304 237 LLNLYTLDKPFSYIDH 252 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~ 252 (257)
|+.|..|+++.|.+.+
T Consensus 270 l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccchhhhhccccCcch
Confidence 9999999999998664
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.78 E-value=0.0057 Score=28.51 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=6.3
Q ss_pred CCcEEEccCCCccccc
Q 037304 215 LLRYLHLNIPSLKSLP 230 (257)
Q Consensus 215 ~L~~L~l~~~~l~~lP 230 (257)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.47 E-value=0.01 Score=49.05 Aligned_cols=91 Identities=19% Similarity=0.039 Sum_probs=52.7
Q ss_pred ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC--chhcCCCCCCcEEEccCCCcccc---c
Q 037304 156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY--PFEIENLFLLRYLHLNIPSLKSL---P 230 (257)
Q Consensus 156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~l~~l---P 230 (257)
.....++ +|+.|.++.+... ...-++.....+++|++|++++|.+..+ -.....+.+|..|++..|....+ -
T Consensus 59 ~~~P~Lp-~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 59 TNFPKLP-KLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred ccCCCcc-hhhhhcccCCccc--ccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHH
Confidence 3455666 7777777766321 1112233345558888888888886631 12244566677777777655433 2
Q ss_pred hhHHhcCccccEeeccCCC
Q 037304 231 SSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 231 ~~i~~~L~~L~~L~l~~~~ 249 (257)
..+|.-+++|.+||--...
T Consensus 136 e~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHHHhhhhccccccccC
Confidence 3454566777777754443
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.05 E-value=0.0035 Score=58.80 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred cchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 182 YCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
..+..+.-++.|+.|+|+.|++...- .+..|++|+.|||+.|.+..+|.-- ..=..|+.|.+++|.+++|
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~-~~gc~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLS-MVGCKLQLLNLRNNALTTL 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccc-hhhhhheeeeecccHHHhh
Confidence 34566777788889999999887664 6778888999999998888887632 2223488999998876554
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.86 E-value=0.016 Score=30.07 Aligned_cols=19 Identities=42% Similarity=0.417 Sum_probs=10.4
Q ss_pred CCCcEEEccCCCccccchh
Q 037304 214 FLLRYLHLNIPSLKSLPSS 232 (257)
Q Consensus 214 ~~L~~L~l~~~~l~~lP~~ 232 (257)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555544
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.86 E-value=0.016 Score=30.07 Aligned_cols=19 Identities=42% Similarity=0.417 Sum_probs=10.4
Q ss_pred CCCcEEEccCCCccccchh
Q 037304 214 FLLRYLHLNIPSLKSLPSS 232 (257)
Q Consensus 214 ~~L~~L~l~~~~l~~lP~~ 232 (257)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555544
No 63
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.62 E-value=0.031 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=12.6
Q ss_pred CccccEeeccCCCCCcCCCC
Q 037304 237 LLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~lP~~ 256 (257)
|.+|++|+|.+|.+..+|++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666666666666653
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.62 E-value=0.031 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=12.6
Q ss_pred CccccEeeccCCCCCcCCCC
Q 037304 237 LLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~lP~~ 256 (257)
|.+|++|+|.+|.+..+|++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666666666666653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.60 E-value=0.016 Score=47.89 Aligned_cols=67 Identities=22% Similarity=0.158 Sum_probs=50.4
Q ss_pred HhhccCcccceEEEeCC--CCc-cCchhcCCCCCCcEEEccCCCcc---ccchhHHhcCccccEeeccCCCCCcC
Q 037304 185 KICKMFKFLRVLDLGSL--VLI-RYPFEIENLFLLRYLHLNIPSLK---SLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~l~---~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
..|..+++|+.|.++.| .+. .++-....+++|++|++++|+++ ++++ . .+|.+|..||+..|....+
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l-~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-L-KELENLKSLDLFNCSVTNL 131 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-h-hhhcchhhhhcccCCcccc
Confidence 45667889999999999 433 56655666799999999999865 4443 3 5788899999998875443
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.47 E-value=0.042 Score=43.97 Aligned_cols=82 Identities=18% Similarity=0.080 Sum_probs=57.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCC-CCCCcEEEccCCCccccch--hHHhcCccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIEN-LFLLRYLHLNIPSLKSLPS--SLLNSLLNL 240 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~l~~lP~--~i~~~L~~L 240 (257)
+...+.+.++..- -...|..++.|.+|.++.|.|..+-+.++. +++|..|.|.+|++.++-+ .+ ..++.|
T Consensus 43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKL 115 (233)
T ss_pred ccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCcc
Confidence 3445555555432 235678888999999999999888666665 5679999999988776532 23 456788
Q ss_pred cEeeccCCCCCc
Q 037304 241 YTLDKPFSYIDH 252 (257)
Q Consensus 241 ~~L~l~~~~l~~ 252 (257)
++|.+-+|.+..
T Consensus 116 ~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 116 EYLTLLGNPVEH 127 (233)
T ss_pred ceeeecCCchhc
Confidence 888887776543
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.035 Score=47.07 Aligned_cols=78 Identities=27% Similarity=0.156 Sum_probs=53.9
Q ss_pred EEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC---chhcCCCCCCcEEEccCCCcc----ccchhHHhcCcc
Q 037304 167 SLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY---PFEIENLFLLRYLHLNIPSLK----SLPSSLLNSLLN 239 (257)
Q Consensus 167 sl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~----~lP~~i~~~L~~ 239 (257)
-+.+.++... ..+....+-...+.++-|||.+|.++.. -.-+.+|++|+.|+++.|.+. .+| . .+.+
T Consensus 49 llvln~~~id--~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~--p~~n 122 (418)
T KOG2982|consen 49 LLVLNGSIID--NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--L--PLKN 122 (418)
T ss_pred hheecCCCCC--cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--c--cccc
Confidence 3344444443 3333444556678899999999998844 334567999999999998654 555 2 4578
Q ss_pred ccEeeccCCCC
Q 037304 240 LYTLDKPFSYI 250 (257)
Q Consensus 240 L~~L~l~~~~l 250 (257)
|++|-|.|+++
T Consensus 123 l~~lVLNgT~L 133 (418)
T KOG2982|consen 123 LRVLVLNGTGL 133 (418)
T ss_pred eEEEEEcCCCC
Confidence 99999988764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.0097 Score=49.89 Aligned_cols=77 Identities=23% Similarity=0.202 Sum_probs=49.0
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccch--hHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPS--SLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~~L~~L~ 241 (257)
+++.|.+.++... --.+..+|+.|+||.|+-|.++.+- .+..+++|+.|.|+.|.|..+-+ -+ .+|++|+
T Consensus 20 ~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLPSLR 91 (388)
T ss_pred HhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCchhh
Confidence 5555656665543 1245677888888888888777663 35667777777777776665533 23 5666777
Q ss_pred EeeccCC
Q 037304 242 TLDKPFS 248 (257)
Q Consensus 242 ~L~l~~~ 248 (257)
+|=|..|
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 7666544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.03 E-value=0.33 Score=35.40 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=53.3
Q ss_pred cEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcE
Q 037304 142 NVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRY 218 (257)
Q Consensus 142 ~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~ 218 (257)
.++.+.+......+ .....+. .++.+.+.+.- ..+....|.+++.|+.+.+.. .+..++ ..+..+.+|+.
T Consensus 13 ~l~~i~~~~~~~~I~~~~F~~~~-~l~~i~~~~~~-----~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPNTIKKIGENAFSNCT-SLKSINFPNNL-----TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETST--EE-TTTTTT-T-T-SEEEESSTT-----SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCEEEECCCeeEeChhhccccc-ccccccccccc-----cccceeeeecccccccccccc-cccccccccccccccccc
Confidence 45556555432222 2334566 77888776532 234556788888888888865 555554 34556888888
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
+.+..+ +..++...|.+. +|+.+.+.. .+..++
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 888764 777877775665 888888765 344444
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.47 E-value=0.17 Score=26.29 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=11.7
Q ss_pred cccEeeccCCCCCcCCC
Q 037304 239 NLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 239 ~L~~L~l~~~~l~~lP~ 255 (257)
+|+.|++++|++.+||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777777765
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.28 E-value=1.3 Score=32.21 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=23.1
Q ss_pred chHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeecc
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKP 246 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~ 246 (257)
....|..+++|+.+.+.++ +..++ ..+..++.|+++.+.. .+..++...|....+|+.+++.
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 3344455544555555442 33333 2233444455555533 3444444332334455555443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.22 E-value=0.011 Score=48.33 Aligned_cols=64 Identities=13% Similarity=-0.039 Sum_probs=37.7
Q ss_pred HhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304 185 KICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
..|+.++.|.-||++.+.+..+|...+.+..++.+++..|..+.+|.+. +++++++++++.+|.
T Consensus 59 ~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKKNEQKKTE 122 (326)
T ss_pred cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcchhhhccCc
Confidence 3344455555566666666666666666655666666555666666666 666666666665553
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.46 E-value=0.015 Score=47.51 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=60.9
Q ss_pred hccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 187 CKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+..++...+||++.+++..+-..++.++.|.-|+++.+.+..+|... +.+..+..+++-.|....+|.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCcc
Confidence 44567788999999998888888888999999999999999999999 9999999999988888888865
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=0.26 Score=42.03 Aligned_cols=62 Identities=27% Similarity=0.140 Sum_probs=42.2
Q ss_pred HhhccCcccceEEEeCCC-Cc-cCchhcCCCCCCcEEEccCCCccccchh---HHhcCccccEeeccCC
Q 037304 185 KICKMFKFLRVLDLGSLV-LI-RYPFEIENLFLLRYLHLNIPSLKSLPSS---LLNSLLNLYTLDKPFS 248 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~-l~-~lp~~i~~L~~L~~L~l~~~~l~~lP~~---i~~~L~~L~~L~l~~~ 248 (257)
..-..+++|..|||+.|. ++ ..-..+-+++.|++|+++.|..- .|.. + +..+.|.+||+-+|
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeee-ccCcceEEEEeccc
Confidence 334678888888888876 54 44456677888888888887521 2322 3 56678888888776
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=0.14 Score=43.52 Aligned_cols=66 Identities=24% Similarity=0.156 Sum_probs=33.0
Q ss_pred hHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCC-ccccch-hHHhcCccccEeeccCCC
Q 037304 184 EKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPS-LKSLPS-SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 184 ~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~-l~~lP~-~i~~~L~~L~~L~l~~~~ 249 (257)
...++.+++|+-|.++|+++. .+-..|.+=.+|+.|+++.++ +++--- -++.++..|+.|+++.|.
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 344555555666666665554 233444444556666665543 442211 122455555555555554
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=84.32 E-value=2.3 Score=35.97 Aligned_cols=47 Identities=15% Similarity=-0.101 Sum_probs=25.9
Q ss_pred ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCC
Q 037304 156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVL 203 (257)
Q Consensus 156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l 203 (257)
+...+++ +++++.++.+.........+.+.+++...|..|.+++|.+
T Consensus 86 ~aLlkcp-~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 86 KALLKCP-RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHhcCC-cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3445666 6666666666554322233445556666666666666554
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.10 E-value=1.3 Score=23.02 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=9.7
Q ss_pred CccccEeeccCCCCCc
Q 037304 237 LLNLYTLDKPFSYIDH 252 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~ 252 (257)
|.+|+.|+++.|+++.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3566666776666543
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.96 E-value=2.9 Score=35.45 Aligned_cols=107 Identities=9% Similarity=-0.077 Sum_probs=54.9
Q ss_pred CcEEEEEEeCCCCcc----------------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc
Q 037304 141 ENVKRFTAHGNLNDF----------------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI 204 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~----------------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~ 204 (257)
..+.||.++++.... .+..+.+ .|+++++-.+.....+.......+..-.+|+++.+..|.|.
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp-~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP-KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC-CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 456677666665321 2334455 77887776665543333444444555556666666666543
Q ss_pred c-----C-chhcCCCCCCcEEEccCCCccccch-----hHHhcCccccEeeccCCC
Q 037304 205 R-----Y-PFEIENLFLLRYLHLNIPSLKSLPS-----SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 205 ~-----l-p~~i~~L~~L~~L~l~~~~l~~lP~-----~i~~~L~~L~~L~l~~~~ 249 (257)
. + --....+++|+.|++..|-++..-+ .. +.-+.|+.|.+.+|-
T Consensus 199 pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al-~~W~~lrEL~lnDCl 253 (388)
T COG5238 199 PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL-CEWNLLRELRLNDCL 253 (388)
T ss_pred cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh-cccchhhhccccchh
Confidence 1 0 1123445566666666655543222 22 333345556655553
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.66 E-value=0.84 Score=36.66 Aligned_cols=34 Identities=29% Similarity=0.116 Sum_probs=16.6
Q ss_pred CcccceEEEeCCC-CccC-chhcCCCCCCcEEEccC
Q 037304 190 FKFLRVLDLGSLV-LIRY-PFEIENLFLLRYLHLNI 223 (257)
Q Consensus 190 l~~Lr~L~L~~~~-l~~l-p~~i~~L~~L~~L~l~~ 223 (257)
.++|+.|++++|. |++- -..+..+++||.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455555555555 4422 23444555555554443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.01 E-value=1.2 Score=22.25 Aligned_cols=14 Identities=43% Similarity=0.297 Sum_probs=8.3
Q ss_pred ccccEeeccCCCCC
Q 037304 238 LNLYTLDKPFSYID 251 (257)
Q Consensus 238 ~~L~~L~l~~~~l~ 251 (257)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777888777643
No 81
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.37 E-value=0.47 Score=40.12 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=49.5
Q ss_pred cCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 189 MFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
.+.+.+.|++-||.+..+. -+.+|+.|+.|.|+-|.|++|-+ + ..+++|+.|.|+.|.|..|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l-~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-L-QRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-H-HHHHHHHHHHHHhcccccH
Confidence 3556778889999987653 25579999999999999998855 4 6889999999999876544
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.76 E-value=1.2 Score=35.86 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=42.0
Q ss_pred HhhccCcccceEEEeCCC-CccC-chhcCC-CCCCcEEEccCCC-ccccc-hhHHhcCccccEeeccC
Q 037304 185 KICKMFKFLRVLDLGSLV-LIRY-PFEIEN-LFLLRYLHLNIPS-LKSLP-SSLLNSLLNLYTLDKPF 247 (257)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~-l~~l-p~~i~~-L~~L~~L~l~~~~-l~~lP-~~i~~~L~~L~~L~l~~ 247 (257)
+.+..++.++.|.+.+|. +... -+-+++ .++|+.|++++|. |++-- ..+ .++++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcC
Confidence 456677778888888876 4421 233333 4789999999985 76432 344 7888888887654
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.07 E-value=4.2 Score=36.62 Aligned_cols=89 Identities=20% Similarity=0.026 Sum_probs=46.4
Q ss_pred cCCCCCccEEEeecC-CCCCCCcccchHhhccCcccceEEEeCCC-CccC-chhcCC-CCCCcEEEccCCC-cc--ccch
Q 037304 159 DHFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRY-PFEIEN-LFLLRYLHLNIPS-LK--SLPS 231 (257)
Q Consensus 159 ~~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~l-p~~i~~-L~~L~~L~l~~~~-l~--~lP~ 231 (257)
...+ +|+.|.+.+. ................+++|+.|+++++. ++.. -..+.. +++|+.|.+.++. ++ .+-.
T Consensus 211 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 211 LKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred hhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 3455 6777766542 11100111122344556777777777766 4421 222322 5677777766654 43 2222
Q ss_pred hHHhcCccccEeeccCCC
Q 037304 232 SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 232 ~i~~~L~~L~~L~l~~~~ 249 (257)
-. .++++|+.|++++|.
T Consensus 290 i~-~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IA-ERCPSLRELDLSGCH 306 (482)
T ss_pred HH-HhcCcccEEeeecCc
Confidence 23 566778888887765
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.12 E-value=5.3 Score=20.89 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=7.9
Q ss_pred ccccEeeccCCCC
Q 037304 238 LNLYTLDKPFSYI 250 (257)
Q Consensus 238 ~~L~~L~l~~~~l 250 (257)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.62 E-value=9.2 Score=19.40 Aligned_cols=12 Identities=33% Similarity=0.102 Sum_probs=8.1
Q ss_pred ccccEeeccCCC
Q 037304 238 LNLYTLDKPFSY 249 (257)
Q Consensus 238 ~~L~~L~l~~~~ 249 (257)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 466777777764
No 86
>PF14162 YozD: YozD-like protein
Probab=53.01 E-value=17 Score=22.16 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHcCCCCCCc--HHHHHHHHHHHHHCCCccc
Q 037304 68 IAEGFIPNNN--EATAERYLEQLINAGFVDA 96 (257)
Q Consensus 68 iaeg~i~~~~--~~~~~~~~~~L~~r~li~~ 96 (257)
+.-|+++... +++|.--|+-|+.+|+|..
T Consensus 22 ~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 22 VKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457777766 7777777777777777653
No 87
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=49.65 E-value=60 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=33.1
Q ss_pred eecHHHHHHHHHH--cCCCCCCcHHHHHHHHHHHHHCCCccceecC
Q 037304 57 EISTKQLYQLWIA--EGFIPNNNEATAERYLEQLINAGFVDAGKRS 100 (257)
Q Consensus 57 ~i~~~~Li~~Wia--eg~i~~~~~~~~~~~~~~L~~r~li~~~~~~ 100 (257)
-+.-.++|.+.+. +|++.. .+.|..+-+.|++.++|+.+...
T Consensus 17 ~F~G~e~v~WL~~~~~~~~~~--r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 17 CFTGSEAVDWLMDNFEGFVRD--REEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEEHHHHHHHHHHTSCTSTSS--HHHHHHHHHHHHHCTSEEESSSS
T ss_pred EeEhHHHHHHHHHhccccccC--HHHHHHHHHHHHHCCCEEECCCC
Confidence 3566788888776 666655 67889999999999999987653
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=45.69 E-value=3.7 Score=36.74 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=22.2
Q ss_pred hhccCcccceEEEeCCC-CccC--chhcCCCCCCcEEEccCCC
Q 037304 186 ICKMFKFLRVLDLGSLV-LIRY--PFEIENLFLLRYLHLNIPS 225 (257)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~-l~~l--p~~i~~L~~L~~L~l~~~~ 225 (257)
.-..++.|+.|++.+|. ++.. -.-...+++|.||+++++.
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 33456667777777654 4422 1123346667777777654
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=45.63 E-value=51 Score=32.64 Aligned_cols=82 Identities=15% Similarity=-0.001 Sum_probs=54.3
Q ss_pred chHHHHHHh-HhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCCC
Q 037304 26 EPRGLQVVA-YCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR 104 (257)
Q Consensus 26 ~i~~~L~lS-Y~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g~ 104 (257)
.+...+.-. ++.||+..+..++..|+++ .++.+ +... +.. .+.+...+++|.+++++...... ++
T Consensus 250 ~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~---~~~~~~~L~~l~~~~l~~~~~~~-~~- 315 (903)
T PRK04841 250 HLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTG---EENGQMRLEELERQGLFIQRMDD-SG- 315 (903)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcC---CCcHHHHHHHHHHCCCeeEeecC-CC-
Confidence 355554333 7899999999999999987 34432 2221 111 12357789999999997532211 11
Q ss_pred eeEEEeChhHHHHHHHhh
Q 037304 105 INTGFIPGRCSPALLTVA 122 (257)
Q Consensus 105 ~~~~~mHdl~~dl~~~i~ 122 (257)
..|+.|++++++...-.
T Consensus 316 -~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 316 -EWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CEEehhHHHHHHHHHHH
Confidence 35789999999998765
No 90
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=44.64 E-value=64 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 59 STKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 59 ~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
.-.++|.+.+..|.+.. .+.|-.+-+.|.+.|+|..+..
T Consensus 32 ~GselVdWL~~~~~~~s--R~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLAQD--RGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 45688997777777655 5678888999999999998764
No 91
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=44.40 E-value=63 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecC
Q 037304 59 STKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRS 100 (257)
Q Consensus 59 ~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~ 100 (257)
.-.++|.+.+..|.+.. .+.|-.+-+.|++.++|+.+...
T Consensus 30 ~GselVdWL~~~~~~~~--R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 30 LGKELVNWLIRQGKAAT--RVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred ChHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 34678998888876644 56788889999999999987643
No 92
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=44.10 E-value=64 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 59 STKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 59 ~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
.-.++|.+.+..|.+.. .+.|-.+-+.|.+.++|+.+..
T Consensus 34 ~GsElVdWL~~~~~~~s--R~eAv~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 34 VGSEFIDWLLQEGEAES--RREAVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred EchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 34688999999886544 6778899999999999998764
No 93
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=40.77 E-value=74 Score=20.72 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred ecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 58 ISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 58 i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
+.-.++|.+.+..+.+.. .+.|..+-+.|++.++|.++..
T Consensus 21 F~G~e~v~wL~~~~~~~~--r~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 21 FTGSELVDWLMDNLEIID--REEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred eEcHHHHHHHHHcCCcCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 556788887777777544 6788999999999999998874
No 94
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=40.21 E-value=20 Score=32.21 Aligned_cols=83 Identities=23% Similarity=0.056 Sum_probs=47.3
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Cc--cCchhcCCCCCCcEEEccCCC-cc--ccchhH
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LI--RYPFEIENLFLLRYLHLNIPS-LK--SLPSSL 233 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~--~lp~~i~~L~~L~~L~l~~~~-l~--~lP~~i 233 (257)
.+. +++.+.+...... ....+......+++|+.|.+.+|. ++ .+-.-...+++|+.|+++++. +. .+....
T Consensus 241 ~~~-~L~~l~l~~~~~i--sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 241 ICR-KLKSLDLSGCGLV--TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hcC-CcCccchhhhhcc--CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 344 6667766665521 122233333447888998877777 55 233334557789999998875 32 233333
Q ss_pred HhcCccccEeecc
Q 037304 234 LNSLLNLYTLDKP 246 (257)
Q Consensus 234 ~~~L~~L~~L~l~ 246 (257)
.++++|+.|.+.
T Consensus 318 -~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 318 -KNCPNLRELKLL 329 (482)
T ss_pred -HhCcchhhhhhh
Confidence 456666655543
No 95
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=38.60 E-value=88 Score=21.79 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 60 TKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 60 ~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
-.+||.+.+..|-+.. .+.|-.+-+.|++.++|+-+..
T Consensus 40 GsElVdWLi~~g~~~t--R~eAv~~gq~Ll~~gii~HV~~ 77 (93)
T cd04440 40 ASKLVDWLLAQGDCRT--REEAVILGVGLCNNGFMHHVLE 77 (93)
T ss_pred hhHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCEEecCC
Confidence 4689999999987775 6778889999999999987664
No 96
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=38.52 E-value=76 Score=19.83 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHCCCccceecCCCCCeeEEEe
Q 037304 78 EATAERYLEQLINAGFVDAGKRSDRGRINTGFI 110 (257)
Q Consensus 78 ~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~m 110 (257)
...+...++.|+++++|+......+++...++.
T Consensus 32 ~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 32 KSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 344567799999999998887777777655543
No 97
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=36.35 E-value=16 Score=24.79 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=29.6
Q ss_pred HhHhhhhHHHHHHHHHhhc--CCCCceecHHHHHHHHHHc
Q 037304 33 VAYCMLLFYLKLCCLYLSV--FPVHFEISTKQLYQLWIAE 70 (257)
Q Consensus 33 lSY~~L~~~lk~cfl~~a~--Fp~~~~i~~~~Li~~Wiae 70 (257)
++++.|.+.+|+.|-.+-. .|+.|.--|+.++..|...
T Consensus 10 ~~~~~l~~~E~~~~~e~~~~~~p~~Yl~iRn~il~~w~~n 49 (86)
T PF04433_consen 10 FDPDKLSEIEKQLCPEFFIGKTPEQYLKIRNTILAEWRKN 49 (86)
T ss_dssp TTTTSS-HHHHHHCHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHhHHHhccCChHHHHHHHHHHHHHHHHC
Confidence 4567788888888887777 7888888899999999754
No 98
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=35.42 E-value=19 Score=33.21 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.7
Q ss_pred hHhhhhHHHHHHHHHh
Q 037304 34 AYCMLLFYLKLCCLYL 49 (257)
Q Consensus 34 SY~~L~~~lk~cfl~~ 49 (257)
||++|..+.|.|+|++
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 7999999999999974
No 99
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=34.04 E-value=22 Score=17.15 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=9.4
Q ss_pred CcEEEccCCCccccchh
Q 037304 216 LRYLHLNIPSLKSLPSS 232 (257)
Q Consensus 216 L~~L~l~~~~l~~lP~~ 232 (257)
|..|++.+++++.|.++
T Consensus 2 LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEG 18 (20)
T ss_pred cEEEECCCCChHHhcCc
Confidence 44566666666555443
No 100
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=32.29 E-value=1.4e+02 Score=20.17 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=31.1
Q ss_pred ecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 58 ISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 58 i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
+.-.++|.+.+..|.+.. .+.|-.+-+.|++.++|..+..
T Consensus 29 F~GselVdWL~~~~~~~~--r~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 29 FLGNEFVSWLLEIGEISK--PEEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred eEhHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 345788997777776655 4567888999999999998764
No 101
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=31.33 E-value=1.3e+02 Score=20.39 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 60 TKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 60 ~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
-.++|.+.+..|.+.. .+.|-.+-+.|++.++|+.+..
T Consensus 31 GselVdWL~~~~~~~s--R~eAv~lgq~Ll~~gvi~HV~~ 68 (82)
T cd04442 31 GKELIDWLIEHKEASD--RETAIKIMQKLLDHSIIHHVCD 68 (82)
T ss_pred cHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEeccC
Confidence 3578898888887643 6778889999999999998753
No 102
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=28.75 E-value=1.4e+02 Score=18.11 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCC
Q 037304 37 MLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRG 103 (257)
Q Consensus 37 ~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g 103 (257)
+|+...-.++.++.-.|.+ .+...+|.+.+- .- .......++.|.++++|.......++
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~---~~----~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLG---IS----KSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHT---S-----HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHC---cC----HHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 3455556677777777776 455555555442 11 44567789999999999887655444
No 103
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=28.32 E-value=85 Score=22.59 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecC
Q 037304 60 TKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRS 100 (257)
Q Consensus 60 ~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~ 100 (257)
-.++|.|.+.++.... ...|..+=..|++.++|+++...
T Consensus 34 Gse~VDWLv~~~~~i~--R~EAv~l~q~Lmd~gli~hV~~~ 72 (109)
T cd04444 34 GSALVDWLISNSFAAS--RLEAVTLASMLMEENFLRPVGVR 72 (109)
T ss_pred chHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCchhhHHHH
Confidence 3578888888888764 56677888999999999987754
No 104
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.94 E-value=5.5 Score=36.59 Aligned_cols=85 Identities=25% Similarity=0.114 Sum_probs=43.6
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcc-cceEEEeCCCCc-----cCchhcCCC-CCCcEEEccCCCcc-----ccch
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKF-LRVLDLGSLVLI-----RYPFEIENL-FLLRYLHLNIPSLK-----SLPS 231 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~-Lr~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~l~-----~lP~ 231 (257)
++++|.+..+.............+...+. ++.|++..|.+. .+.+.+..+ ..++.++++.|++. .++.
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 55566555554432122223334444444 555666666543 223334444 45566666666553 4455
Q ss_pred hHHhcCccccEeeccCCC
Q 037304 232 SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 232 ~i~~~L~~L~~L~l~~~~ 249 (257)
.+ ....++++|.+..|.
T Consensus 285 ~l-~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 285 VL-VSCRQLEELSLSNNP 301 (478)
T ss_pred HH-hhhHHHHHhhcccCc
Confidence 55 555666666666654
No 105
>COG5626 Uncharacterized small conserved protein [Function unknown]
Probab=25.36 E-value=74 Score=21.75 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCCCCcHHHHHH
Q 037304 63 LYQLWIAEGFIPNNNEATAER 83 (257)
Q Consensus 63 Li~~Wiaeg~i~~~~~~~~~~ 83 (257)
=+..||.+|++...+++.+.+
T Consensus 52 ~V~~Wise~lisKp~e~~l~d 72 (97)
T COG5626 52 KVAAWISEGLISKPGEDALKD 72 (97)
T ss_pred HHHHHHhccCcCCCCHHHHhh
Confidence 378899999998887554444
No 106
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=24.25 E-value=2.3e+02 Score=19.00 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 60 TKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 60 ~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
-.++|. |+-+.+-.....+.|-.+.+.|.+.++|..+..
T Consensus 32 G~e~Vd-WL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~ 70 (83)
T cd04449 32 GSEAVS-WLINNFEDVDTREEAVELGQELMNEGLIEHVSG 70 (83)
T ss_pred hHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 467788 544433222226778899999999999998764
No 107
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=22.82 E-value=2.2e+02 Score=18.43 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=31.1
Q ss_pred ecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 58 ISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 58 i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
+.-.+++.+.+..+-... .+.|..+-+.|++.++|+.+..
T Consensus 29 F~G~e~v~WL~~~~~~~~--r~ea~~~~~~ll~~g~i~~v~~ 68 (81)
T cd04371 29 FTGSELVDWLLDNLEAIT--REEAVELGQALLKHGLIHHVSD 68 (81)
T ss_pred eEcHHHHHHHHHhCCCCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 456778887777765522 7788999999999999998764
No 108
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=21.99 E-value=1.6e+02 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCccceecCCC
Q 037304 78 EATAERYLEQLINAGFVDAGKRSDR 102 (257)
Q Consensus 78 ~~~~~~~~~~L~~r~li~~~~~~~~ 102 (257)
-.+|...|++|.++|+|.++..+..
T Consensus 73 ~SlAr~~Lr~L~~kG~Ik~V~k~~~ 97 (105)
T PF03297_consen 73 GSLARKALRELESKGLIKPVSKHHR 97 (105)
T ss_dssp CHHHHHHHHHHHHCCSSEEEECCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEeccCC
Confidence 4679999999999999999875543
No 109
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.92 E-value=56 Score=30.54 Aligned_cols=60 Identities=20% Similarity=0.116 Sum_probs=29.8
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC--CccCchhcCCC--CCCcEEEccCCCc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV--LIRYPFEIENL--FLLRYLHLNIPSL 226 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--l~~lp~~i~~L--~~L~~L~l~~~~l 226 (257)
.+.++.+.++... ........-+..++|..|+|++|. +... .++.++ .-|+.|-+.||.+
T Consensus 219 ~i~sl~lsnNrL~--~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 219 EILSLSLSNNRLY--HLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred ceeeeecccchhh--chhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcc
Confidence 5555555555443 112223344556677777777763 2221 122222 2356666667664
No 110
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=21.74 E-value=98 Score=19.34 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=16.7
Q ss_pred CCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCc
Q 037304 53 PVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFV 94 (257)
Q Consensus 53 p~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li 94 (257)
+.+-.++..-|-++|.+.+++...+ +..|++++=+
T Consensus 3 ~~~~~~d~~pL~~Yy~~h~~L~E~D-------L~~L~~kS~m 37 (56)
T PF11569_consen 3 ASGKPVDIQPLEDYYLKHKQLQEED-------LDELCDKSRM 37 (56)
T ss_dssp --------HHHHHHHHHT----TTH-------HHHHHHHTT-
T ss_pred CCCCCcchHHHHHHHHHcCCccHhh-------HHHHHHHHCC
Confidence 3444566677889999999997754 6777766544
No 111
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.07 E-value=1.2e+02 Score=19.10 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=19.2
Q ss_pred ecHHHHHHHHHHcCCCCCCc-HHHHHHHHHHHHHCCCcc
Q 037304 58 ISTKQLYQLWIAEGFIPNNN-EATAERYLEQLINAGFVD 95 (257)
Q Consensus 58 i~~~~Li~~Wiaeg~i~~~~-~~~~~~~~~~L~~r~li~ 95 (257)
.+.+++++...++.=+.... +.-...++++|.++++|+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCcCcC
Confidence 45566666665553222211 444566788888888875
No 112
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=21.06 E-value=3e+02 Score=19.25 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCccceecCCCCCeeEEEeChhHHHH
Q 037304 78 EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPA 117 (257)
Q Consensus 78 ~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl 117 (257)
...|..|++.|++++++...+. |+-+.|..=+-=.++
T Consensus 45 y~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~f 81 (95)
T COG3432 45 YKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRF 81 (95)
T ss_pred HHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHH
Confidence 8899999999999997776553 322345555543333
No 113
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.13 E-value=1.3e+02 Score=26.22 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCC
Q 037304 36 CMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNN 76 (257)
Q Consensus 36 ~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~ 76 (257)
.++.+..|..+++.-.|-++...+-..+.-.|.+.|.++..
T Consensus 126 K~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~t 166 (412)
T KOG2297|consen 126 KNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPAT 166 (412)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34566799999999999999888888899999999998663
Done!