Query 037304
Match_columns 257
No_of_seqs 288 out of 2903
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.7 1.2E-18 4.2E-23 159.7 1.4 110 9-127 344-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.4 3.1E-13 1E-17 133.9 9.2 91 25-125 362-452 (1249)
3 1vt4_I APAF-1 related killer D 99.4 4.8E-13 1.6E-17 128.0 7.6 85 24-119 352-437 (1221)
4 3e6j_A Variable lymphocyte rec 99.2 3.7E-11 1.2E-15 97.7 9.9 109 141-255 40-152 (229)
5 2ell_A Acidic leucine-rich nuc 99.2 9.7E-11 3.3E-15 90.3 10.0 110 141-256 49-165 (168)
6 2v9t_B SLIT homolog 2 protein 99.2 9.4E-11 3.2E-15 94.7 9.7 110 141-255 32-145 (220)
7 2o6s_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 91.8 9.7 110 141-255 28-141 (208)
8 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.2E-15 89.7 8.5 89 162-255 33-122 (174)
9 2o6r_A Variable lymphocyte rec 99.1 2.8E-10 9.5E-15 88.5 9.5 106 141-251 28-137 (177)
10 1z6t_A APAF-1, apoptotic prote 99.1 1.4E-10 4.9E-15 106.8 9.2 88 25-122 362-449 (591)
11 3e6j_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 92.1 9.5 90 162-256 40-130 (229)
12 1p9a_G Platelet glycoprotein I 99.1 2.7E-10 9.4E-15 95.9 9.4 111 141-256 77-190 (290)
13 3rfs_A Internalin B, repeat mo 99.1 2.9E-10 9.8E-15 94.7 9.3 110 141-255 85-198 (272)
14 3m19_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 93.6 9.1 110 141-255 59-172 (251)
15 1dce_A Protein (RAB geranylger 99.1 2.1E-10 7.3E-15 105.3 9.2 107 142-256 442-551 (567)
16 3m19_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 93.1 9.4 106 141-251 83-192 (251)
17 2v70_A SLIT-2, SLIT homolog 2 99.1 3.7E-10 1.3E-14 91.2 9.2 106 142-253 33-144 (220)
18 2wfh_A SLIT homolog 2 protein 99.1 5E-10 1.7E-14 88.6 9.6 104 141-249 31-137 (193)
19 2ell_A Acidic leucine-rich nuc 99.1 2.4E-10 8.1E-15 88.1 7.6 107 141-255 24-137 (168)
20 2je0_A Acidic leucine-rich nuc 99.1 1.4E-10 4.7E-15 87.6 6.1 107 141-255 17-130 (149)
21 1p9a_G Platelet glycoprotein I 99.1 3E-10 1E-14 95.6 8.8 110 141-256 55-166 (290)
22 2v9t_B SLIT homolog 2 protein 99.1 3.1E-10 1.1E-14 91.6 8.5 88 164-255 33-121 (220)
23 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 87.6 8.1 86 162-252 30-116 (170)
24 4fcg_A Uncharacterized protein 99.1 4.8E-10 1.6E-14 96.0 9.4 103 141-249 127-240 (328)
25 4fcg_A Uncharacterized protein 99.0 3.8E-10 1.3E-14 96.7 8.2 109 141-256 104-224 (328)
26 4b8c_D Glucose-repressible alc 99.0 1.2E-10 4E-15 110.1 5.4 106 141-253 224-331 (727)
27 2o6q_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 91.7 9.9 110 141-255 85-198 (270)
28 4ezg_A Putative uncharacterize 99.0 9.7E-10 3.3E-14 87.0 9.7 107 141-254 66-175 (197)
29 2wfh_A SLIT homolog 2 protein 99.0 6.5E-10 2.2E-14 87.9 8.6 88 164-256 32-120 (193)
30 4b8c_D Glucose-repressible alc 99.0 2.7E-10 9.1E-15 107.6 7.2 93 158-257 220-312 (727)
31 2o6q_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 91.2 9.8 110 141-255 61-174 (270)
32 1ogq_A PGIP-2, polygalacturona 99.0 5.6E-10 1.9E-14 94.9 8.3 104 142-251 51-162 (313)
33 2o6s_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 87.2 9.5 91 161-256 27-118 (208)
34 1a9n_A U2A', U2A'; complex (nu 99.0 4.9E-10 1.7E-14 87.1 7.0 102 142-249 43-151 (176)
35 4g8a_A TOLL-like receptor 4; l 99.0 5.3E-10 1.8E-14 103.0 8.4 108 141-253 52-163 (635)
36 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 85.3 8.8 91 161-256 27-118 (177)
37 4ezg_A Putative uncharacterize 99.0 2.4E-09 8.1E-14 84.7 10.7 106 141-254 44-153 (197)
38 4g8a_A TOLL-like receptor 4; l 99.0 5.8E-10 2E-14 102.7 8.0 108 141-254 76-189 (635)
39 1w8a_A SLIT protein; signaling 99.0 8E-10 2.7E-14 87.3 7.7 105 141-251 29-139 (192)
40 3rfs_A Internalin B, repeat mo 99.0 1.3E-09 4.6E-14 90.6 9.4 104 141-249 109-216 (272)
41 2xot_A Amphoterin-induced prot 99.0 1.1E-09 3.9E-14 94.8 9.1 109 141-254 64-179 (361)
42 2v70_A SLIT-2, SLIT homolog 2 99.0 1.2E-09 4E-14 88.2 8.6 105 141-251 57-166 (220)
43 1w8a_A SLIT protein; signaling 99.0 1.2E-09 4E-14 86.3 7.7 87 164-254 30-118 (192)
44 2xot_A Amphoterin-induced prot 99.0 1.1E-09 3.7E-14 94.9 8.0 110 141-256 39-154 (361)
45 3vq2_A TLR4, TOLL-like recepto 99.0 8.9E-10 3.1E-14 101.5 7.7 108 141-254 56-169 (606)
46 1ozn_A Reticulon 4 receptor; N 99.0 1.8E-09 6.1E-14 90.2 8.8 108 141-253 80-192 (285)
47 3o6n_A APL1; leucine-rich repe 99.0 1.5E-09 5.1E-14 94.8 8.4 109 141-254 45-157 (390)
48 1xku_A Decorin; proteoglycan, 98.9 2.6E-09 9E-14 91.1 9.4 109 141-255 171-280 (330)
49 1a9n_A U2A', U2A'; complex (nu 98.9 1.5E-09 5E-14 84.4 6.8 107 141-255 19-130 (176)
50 1ozn_A Reticulon 4 receptor; N 98.9 3E-09 1E-13 88.9 9.2 111 141-255 56-170 (285)
51 2xwt_C Thyrotropin receptor; s 98.9 3.1E-09 1E-13 86.5 8.7 109 141-255 55-173 (239)
52 3o6n_A APL1; leucine-rich repe 98.9 2.5E-09 8.6E-14 93.3 8.6 107 142-254 227-334 (390)
53 1dce_A Protein (RAB geranylger 98.9 1.4E-09 4.8E-14 99.9 7.1 85 164-256 442-528 (567)
54 2je0_A Acidic leucine-rich nuc 98.9 1.1E-09 3.9E-14 82.5 5.4 88 161-254 16-104 (149)
55 2z62_A TOLL-like receptor 4, v 98.9 2.7E-09 9.1E-14 88.8 8.0 108 141-254 52-165 (276)
56 2r9u_A Variable lymphocyte rec 98.9 4.2E-09 1.4E-13 81.9 8.6 66 191-256 33-99 (174)
57 2z63_A TOLL-like receptor 4, v 98.9 3E-09 1E-13 97.1 7.8 108 141-254 52-165 (570)
58 1ziw_A TOLL-like receptor 3; i 98.9 4.2E-09 1.4E-13 98.3 8.9 108 141-254 25-137 (680)
59 3vq2_A TLR4, TOLL-like recepto 98.9 4E-09 1.4E-13 97.1 8.5 109 141-255 32-147 (606)
60 3v47_A TOLL-like receptor 5B a 98.9 5.7E-09 2E-13 92.7 9.2 83 164-250 324-407 (455)
61 2z62_A TOLL-like receptor 4, v 98.9 3.9E-09 1.3E-13 87.7 7.5 109 141-255 28-143 (276)
62 2z80_A TOLL-like receptor 2, v 98.9 3.5E-09 1.2E-13 91.2 7.4 102 141-248 52-159 (353)
63 3o53_A Protein LRIM1, AGAP0063 98.9 5.3E-09 1.8E-13 88.9 8.4 109 141-256 120-232 (317)
64 3oja_B Anopheles plasmodium-re 98.9 4.4E-09 1.5E-13 97.1 8.4 107 142-254 233-340 (597)
65 1ogq_A PGIP-2, polygalacturona 98.9 2.4E-09 8.2E-14 90.9 6.1 109 141-255 76-192 (313)
66 2xwt_C Thyrotropin receptor; s 98.9 5.2E-09 1.8E-13 85.1 7.9 109 141-256 31-149 (239)
67 3g39_A Variable lymphocyte rec 98.9 7.7E-09 2.6E-13 80.0 8.4 85 165-256 11-96 (170)
68 3zyi_A Leucine-rich repeat-con 98.9 5.4E-09 1.9E-13 93.1 8.5 102 141-247 75-180 (452)
69 2z63_A TOLL-like receptor 4, v 98.9 4.7E-09 1.6E-13 95.8 8.1 109 141-255 28-143 (570)
70 3oja_B Anopheles plasmodium-re 98.8 6.3E-09 2.2E-13 96.0 9.0 109 141-254 75-187 (597)
71 3v47_A TOLL-like receptor 5B a 98.8 6.6E-09 2.3E-13 92.3 8.6 106 141-251 30-142 (455)
72 3zyj_A Leucine-rich repeat-con 98.8 9E-09 3.1E-13 91.4 9.3 102 141-247 64-169 (440)
73 1h6u_A Internalin H; cell adhe 98.8 1.1E-08 3.8E-13 86.6 9.5 104 141-254 63-167 (308)
74 3oja_A Leucine-rich immune mol 98.8 8.1E-09 2.8E-13 93.1 8.5 109 141-256 120-232 (487)
75 2ft3_A Biglycan; proteoglycan, 98.8 3.4E-09 1.2E-13 90.5 5.6 87 164-255 194-281 (332)
76 1h6u_A Internalin H; cell adhe 98.8 1.7E-08 5.7E-13 85.6 9.8 104 141-254 85-189 (308)
77 2ifg_A High affinity nerve gro 98.8 5E-09 1.7E-13 90.0 6.7 91 155-251 24-116 (347)
78 1h6t_A Internalin B; cell adhe 98.8 1.7E-08 5.9E-13 84.8 9.6 103 141-253 90-193 (291)
79 2z7x_B TOLL-like receptor 1, v 98.8 8.1E-09 2.8E-13 93.4 8.0 103 141-251 21-128 (520)
80 2z81_A CD282 antigen, TOLL-lik 98.8 6.9E-09 2.4E-13 94.3 7.6 108 141-254 26-140 (549)
81 2z66_A Variable lymphocyte rec 98.8 6.7E-09 2.3E-13 87.5 6.9 109 141-253 126-238 (306)
82 2z80_A TOLL-like receptor 2, v 98.8 1.1E-08 3.6E-13 88.2 8.1 88 164-255 53-141 (353)
83 3j0a_A TOLL-like receptor 5; m 98.8 1.3E-08 4.4E-13 97.6 9.5 105 141-250 24-135 (844)
84 1xeu_A Internalin C; cellular 98.8 2.3E-08 7.7E-13 82.9 9.3 102 141-253 63-165 (263)
85 4ecn_A Leucine-rich repeat pro 98.8 1.1E-08 3.9E-13 98.1 8.4 109 141-256 491-613 (876)
86 3t6q_A CD180 antigen; protein- 98.8 1.2E-08 4.1E-13 93.9 8.4 107 141-253 33-144 (606)
87 2id5_A Lingo-1, leucine rich r 98.8 1.3E-08 4.4E-13 91.1 8.2 105 141-250 32-140 (477)
88 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.6E-08 5.5E-13 92.5 9.0 104 141-252 52-160 (562)
89 1h6t_A Internalin B; cell adhe 98.8 2.6E-08 8.9E-13 83.7 9.6 104 141-254 68-172 (291)
90 3zyi_A Leucine-rich repeat-con 98.8 1.6E-08 5.5E-13 90.1 8.5 88 164-255 76-164 (452)
91 2z7x_B TOLL-like receptor 1, v 98.8 1.6E-08 5.5E-13 91.4 8.5 84 162-253 21-105 (520)
92 2ft3_A Biglycan; proteoglycan, 98.8 3.1E-08 1.1E-12 84.5 9.8 104 141-251 54-160 (332)
93 3rgz_A Protein brassinosteroid 98.8 1.3E-08 4.5E-13 96.6 8.1 91 159-255 629-722 (768)
94 2id5_A Lingo-1, leucine rich r 98.7 1.5E-08 5.1E-13 90.7 7.7 87 164-254 33-120 (477)
95 2z66_A Variable lymphocyte rec 98.7 1.1E-08 3.6E-13 86.3 6.4 107 141-251 28-139 (306)
96 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 2E-08 6.9E-13 91.8 8.7 102 144-254 34-137 (562)
97 4eco_A Uncharacterized protein 98.7 9.5E-09 3.2E-13 95.6 6.5 109 141-256 249-371 (636)
98 3zyj_A Leucine-rich repeat-con 98.7 2.7E-08 9.2E-13 88.3 8.9 106 141-253 88-222 (440)
99 4glp_A Monocyte differentiatio 98.7 5.1E-09 1.7E-13 88.7 4.0 65 187-254 220-288 (310)
100 1m9s_A Internalin B; cell inva 98.7 3.5E-08 1.2E-12 91.2 9.8 65 186-253 148-212 (605)
101 2ifg_A High affinity nerve gro 98.7 3.3E-08 1.1E-12 84.8 8.7 73 183-256 24-98 (347)
102 4ecn_A Leucine-rich repeat pro 98.7 2.3E-08 8E-13 95.9 8.0 108 141-254 448-589 (876)
103 3rgz_A Protein brassinosteroid 98.7 2.7E-08 9.3E-13 94.4 8.4 109 141-255 442-556 (768)
104 1o6v_A Internalin A; bacterial 98.7 3.2E-08 1.1E-12 88.5 8.3 104 141-254 46-150 (466)
105 4eco_A Uncharacterized protein 98.7 2.1E-08 7.1E-13 93.3 7.4 108 141-254 206-347 (636)
106 4fmz_A Internalin; leucine ric 98.7 6.2E-08 2.1E-12 82.9 9.6 104 141-253 66-170 (347)
107 2z81_A CD282 antigen, TOLL-lik 98.7 3.3E-08 1.1E-12 89.8 8.2 87 162-253 26-113 (549)
108 1xku_A Decorin; proteoglycan, 98.7 4.5E-08 1.5E-12 83.4 8.0 104 141-251 52-158 (330)
109 4glp_A Monocyte differentiatio 98.7 1.7E-08 5.7E-13 85.5 5.1 113 141-256 145-269 (310)
110 3oja_A Leucine-rich immune mol 98.7 2.2E-08 7.5E-13 90.3 6.0 109 141-256 99-209 (487)
111 1m9s_A Internalin B; cell inva 98.7 6.1E-08 2.1E-12 89.6 9.0 104 141-254 87-191 (605)
112 1wwl_A Monocyte differentiatio 98.7 5.2E-08 1.8E-12 82.5 7.9 90 160-254 199-290 (312)
113 1xeu_A Internalin C; cellular 98.6 5.1E-08 1.8E-12 80.7 7.4 103 141-254 85-188 (263)
114 1ziw_A TOLL-like receptor 3; i 98.6 7.3E-08 2.5E-12 89.9 9.3 67 187-253 532-599 (680)
115 1wwl_A Monocyte differentiatio 98.6 3.7E-08 1.3E-12 83.4 6.5 113 141-257 149-272 (312)
116 4fmz_A Internalin; leucine ric 98.6 1.3E-07 4.4E-12 80.9 9.9 105 141-254 221-327 (347)
117 3o53_A Protein LRIM1, AGAP0063 98.6 6.8E-08 2.3E-12 82.0 7.2 103 141-251 144-250 (317)
118 1ds9_A Outer arm dynein; leuci 98.6 4E-09 1.4E-13 83.5 -0.7 89 157-254 43-131 (198)
119 3bz5_A Internalin-J, INLJ; leu 98.6 1.3E-07 4.6E-12 84.4 8.9 98 141-251 42-140 (457)
120 3t6q_A CD180 antigen; protein- 98.5 1.1E-07 3.8E-12 87.5 7.4 68 186-253 124-194 (606)
121 3j0a_A TOLL-like receptor 5; m 98.5 2.3E-07 7.9E-12 88.9 9.1 109 141-254 266-378 (844)
122 1ds9_A Outer arm dynein; leuci 98.5 2.1E-09 7.2E-14 85.1 -4.3 103 141-251 48-153 (198)
123 1o6v_A Internalin A; bacterial 98.5 4.6E-07 1.6E-11 80.9 10.0 62 187-251 261-322 (466)
124 4ay9_X Follicle-stimulating ho 98.5 2.4E-07 8.3E-12 79.7 7.4 112 141-256 104-220 (350)
125 3bz5_A Internalin-J, INLJ; leu 98.5 2.8E-07 9.6E-12 82.3 7.4 86 157-254 37-122 (457)
126 3cvr_A Invasion plasmid antige 98.5 2.7E-07 9.3E-12 84.6 7.4 57 191-251 180-243 (571)
127 3cvr_A Invasion plasmid antige 98.4 5E-07 1.7E-11 82.9 8.0 97 142-256 121-225 (571)
128 2ast_B S-phase kinase-associat 98.4 1.8E-07 6.2E-12 79.6 4.5 103 141-249 93-206 (336)
129 2ca6_A RAN GTPase-activating p 98.4 2.2E-07 7.5E-12 80.9 5.1 112 141-253 187-318 (386)
130 1jl5_A Outer protein YOPM; leu 98.3 1.1E-06 3.9E-11 78.3 8.6 101 141-255 111-212 (454)
131 3g06_A SSPH2 (leucine-rich rep 98.3 1.9E-06 6.5E-11 79.9 10.1 97 141-255 61-158 (622)
132 4ay9_X Follicle-stimulating ho 98.3 1.7E-06 6E-11 74.3 8.6 87 164-254 31-120 (350)
133 3g06_A SSPH2 (leucine-rich rep 98.3 1.8E-06 6E-11 80.1 8.6 77 164-252 222-298 (622)
134 2ast_B S-phase kinase-associat 98.3 3E-07 1E-11 78.2 2.8 85 160-249 166-258 (336)
135 2ca6_A RAN GTPase-activating p 98.2 9.1E-07 3.1E-11 76.9 5.3 109 142-252 160-288 (386)
136 1jl5_A Outer protein YOPM; leu 98.2 3.8E-06 1.3E-10 74.9 8.1 65 186-255 190-254 (454)
137 3goz_A Leucine-rich repeat-con 98.0 4E-06 1.4E-10 72.3 4.8 88 164-252 139-239 (362)
138 3goz_A Leucine-rich repeat-con 97.9 8.3E-06 2.8E-10 70.3 5.4 107 141-251 22-151 (362)
139 1z7x_W Ribonuclease inhibitor; 97.9 6.1E-06 2.1E-10 73.1 4.1 107 141-251 28-155 (461)
140 1z7x_W Ribonuclease inhibitor; 97.9 6.5E-06 2.2E-10 72.9 3.6 87 164-251 314-411 (461)
141 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.8E-10 66.8 4.4 62 188-251 167-233 (267)
142 3un9_A NLR family member X1; l 97.8 7.4E-06 2.5E-10 71.2 3.3 109 141-251 126-252 (372)
143 3rw6_A Nuclear RNA export fact 97.7 4.1E-05 1.4E-09 63.3 6.1 82 160-245 168-258 (267)
144 3sb4_A Hypothetical leucine ri 97.7 5.9E-05 2E-09 64.0 6.2 88 161-255 225-314 (329)
145 3un9_A NLR family member X1; l 97.6 2E-05 6.7E-10 68.5 2.8 109 141-251 101-224 (372)
146 1io0_A Tropomodulin; LRR prote 97.6 3.2E-05 1.1E-09 60.3 3.6 108 141-250 36-163 (185)
147 1io0_A Tropomodulin; LRR prote 97.6 3.4E-05 1.2E-09 60.1 3.5 92 158-251 32-136 (185)
148 3ogk_B Coronatine-insensitive 97.6 9E-05 3.1E-09 67.6 6.1 65 186-251 458-526 (592)
149 3e4g_A ATP synthase subunit S, 97.4 0.00023 8E-09 54.9 6.1 83 164-251 62-153 (176)
150 3rfe_A Platelet glycoprotein I 97.4 0.00019 6.7E-09 52.6 5.3 53 195-249 12-66 (130)
151 3ogk_B Coronatine-insensitive 97.3 0.00022 7.4E-09 65.1 5.5 22 227-249 283-304 (592)
152 2ra8_A Uncharacterized protein 97.3 0.00027 9.4E-09 61.0 5.7 109 141-251 193-320 (362)
153 2p1m_B Transport inhibitor res 97.1 0.00029 1E-08 64.2 3.6 104 141-248 105-221 (594)
154 3sb4_A Hypothetical leucine ri 97.0 0.0012 4.2E-08 55.7 6.7 98 141-245 226-328 (329)
155 2p1m_B Transport inhibitor res 96.9 0.00043 1.5E-08 63.1 3.4 85 160-249 103-195 (594)
156 2ra8_A Uncharacterized protein 96.7 0.0073 2.5E-07 52.0 8.9 106 141-252 172-293 (362)
157 4fdw_A Leucine rich hypothetic 96.5 0.0093 3.2E-07 52.0 8.8 110 142-255 249-362 (401)
158 3e4g_A ATP synthase subunit S, 96.2 0.019 6.4E-07 44.2 7.6 84 141-228 61-154 (176)
159 4fdw_A Leucine rich hypothetic 95.2 0.044 1.5E-06 47.7 7.1 84 164-254 249-338 (401)
160 3rfe_A Platelet glycoprotein I 94.3 0.034 1.2E-06 40.3 3.5 35 192-226 32-67 (130)
161 4h09_A Hypothetical leucine ri 93.2 0.24 8.3E-06 42.2 7.6 65 182-247 277-342 (379)
162 4gt6_A Cell surface protein; l 92.4 0.47 1.6E-05 40.7 8.3 66 181-248 301-367 (394)
163 1pgv_A TMD-1, tropomodulin TMD 92.1 0.087 3E-06 41.2 2.9 89 159-249 67-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 91.1 0.27 9.3E-06 38.3 4.7 87 160-248 39-136 (197)
165 4fs7_A Uncharacterized protein 91.1 0.27 9.1E-06 42.3 5.2 65 182-248 311-376 (394)
166 4h09_A Hypothetical leucine ri 91.0 0.64 2.2E-05 39.5 7.5 65 182-247 254-319 (379)
167 4gt6_A Cell surface protein; l 84.7 2.4 8.1E-05 36.2 7.1 86 160-254 263-349 (394)
168 4fs7_A Uncharacterized protein 82.6 3 0.0001 35.6 6.9 69 183-254 289-358 (394)
169 1w5s_A Origin recognition comp 46.0 14 0.00048 31.2 3.3 65 33-98 301-372 (412)
170 1uhw_A Pleckstrin; three-helix 36.7 44 0.0015 23.0 4.0 39 59-99 39-77 (109)
171 3lqv_P Splicing factor 3B subu 36.1 12 0.0004 20.6 0.8 9 50-58 30-38 (39)
172 1fnn_A CDC6P, cell division co 33.1 1.7E+02 0.0057 24.0 8.1 88 35-123 283-385 (389)
173 2cso_A Pleckstrin; DEP domain, 30.7 67 0.0023 22.8 4.2 39 58-98 48-86 (127)
174 1hqc_A RUVB; extended AAA-ATPa 24.1 9.2 0.00032 31.3 -1.5 30 67-96 289-324 (324)
175 2klq_A CBD, P105MCM, DNA repli 20.5 1.9E+02 0.0065 19.8 5.0 44 54-97 32-83 (114)
176 2ysr_A DEP domain-containing p 20.2 1.9E+02 0.0064 19.5 4.8 40 58-99 41-87 (105)
177 1fsh_A Dishevelled-1; three-he 20.2 1.8E+02 0.006 19.6 4.7 40 58-99 51-91 (105)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.71 E-value=1.2e-18 Score=159.71 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=86.1
Q ss_pred hHHHh--hcccCCCCCCCcchHHHHHHhHhhhhHHHHHHHH-----------HhhcCCCCceecHHHHHHHHHHc--CCC
Q 037304 9 NYLFV--LDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCL-----------YLSVFPVHFEISTKQLYQLWIAE--GFI 73 (257)
Q Consensus 9 ~W~~~--l~~~~~~~~~~~~i~~~L~lSY~~L~~~lk~cfl-----------~~a~Fp~~~~i~~~~Li~~Wiae--g~i 73 (257)
.|+.+ +.+.++.. ..+++.++|++||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+
T Consensus 344 ~w~~~~~l~~~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i 418 (549)
T 2a5y_B 344 TFEKMAQLNNKLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDI 418 (549)
T ss_dssp SHHHHHHHHHHHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--
T ss_pred hHHHHHHhHHHhhcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeecccee
Confidence 35443 33433332 2467999999999999999999999 999999999999 8999999 999
Q ss_pred CCCc-----HHHHHHHHHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhccCCe
Q 037304 74 PNNN-----EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEF 127 (257)
Q Consensus 74 ~~~~-----~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~~e~~ 127 (257)
...+ +++++ ||++|+++||+++...+ ....|+|||+||++|+.++.++++
T Consensus 419 ~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 419 CSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -----CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7543 77777 99999999999987643 346899999999999999887543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.41 E-value=3.1e-13 Score=133.93 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=81.0
Q ss_pred cchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCCC
Q 037304 25 DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR 104 (257)
Q Consensus 25 ~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g~ 104 (257)
+.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +|+
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~ 431 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGK 431 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCC
Confidence 4699999999999999999999999999999999999999999765 567899999999999999765 344
Q ss_pred eeEEEeChhHHHHHHHhhccC
Q 037304 105 INTGFIPGRCSPALLTVAFEG 125 (257)
Q Consensus 105 ~~~~~mHdl~~dl~~~i~~~e 125 (257)
...|+|||++|++++..+.++
T Consensus 432 ~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 432 SFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEEecHHHHHHHHhhhhHH
Confidence 467999999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.38 E-value=4.8e-13 Score=128.03 Aligned_cols=85 Identities=19% Similarity=0.120 Sum_probs=75.0
Q ss_pred CcchHHHHHHhHhhhhHHH-HHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCC
Q 037304 24 LDEPRGLQVVAYCMLLFYL-KLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDR 102 (257)
Q Consensus 24 ~~~i~~~L~lSY~~L~~~l-k~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~ 102 (257)
.+.+..+|.+||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++|||+...
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~---- 421 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP---- 421 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS----
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC----
Confidence 3689999999999999999 99999999999999999999999999988 235889999999999999842
Q ss_pred CCeeEEEeChhHHHHHH
Q 037304 103 GRINTGFIPGRCSPALL 119 (257)
Q Consensus 103 g~~~~~~mHdl~~dl~~ 119 (257)
....|+|||++++++.
T Consensus 422 -~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 -KESTISIPSIYLELKV 437 (1221)
T ss_dssp -SSSEEBCCCHHHHHHH
T ss_pred -CCCEEEehHHHHHHhc
Confidence 2257999999999763
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=3.7e-11 Score=97.72 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=86.3
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... .+.+..|..+++|++|+|++|.++.+|.. ++.+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLG----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCC----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 567788887776553 2345677 8888888887753 44556778888999999999988887654 5788899
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|..+ +.+.+|++|++++|.+..+|.
T Consensus 115 ~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCT
T ss_pred CeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCH
Confidence 99999999888899888 889999999999888887775
No 5
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=9.7e-11 Score=90.31 Aligned_cols=110 Identities=16% Similarity=0.007 Sum_probs=92.4
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~ 217 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ..++..+..+++|++|++++|.+..+| ..++.+++|+
T Consensus 49 ~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 49 VNLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIF----GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCC----SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred CCCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCc----hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 667888888876543 4556677 8999999988764 236677888999999999999999876 7899999999
Q ss_pred EEEccCCCccccch----hHHhcCccccEeeccCCCCCcCCCC
Q 037304 218 YLHLNIPSLKSLPS----SLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 218 ~L~l~~~~l~~lP~----~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+|++++|.+..+|. .+ +.+++|++|++++|.+.++|++
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCCChhhcccc
Confidence 99999999999987 56 9999999999999999998874
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=9.4e-11 Score=94.72 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=84.4
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... .+.+..|.++++|++|+|++|.+..+|.. +..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQIS----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCC----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCC----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 567788877776553 1 345677 8888888887653 45567888888899999999888888765 5778889
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|+|++|.++.++...|+.+++|++|++++|.+..+|.
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 999998888887754433888889999998888887765
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.9e-10 Score=91.82 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=65.2
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..+++|.+..+.... + ....++ +|+.|.+.++... .+.+..|..+++|++|++++|.+..+|.. ++.+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccC----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 455666666554432 1 123555 6677766665442 33444556666667777766666665543 4666666
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|+++++|++|++++|.+..+|.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 666666666666665533666666666666666665554
No 8
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=1.8e-10 Score=89.69 Aligned_cols=89 Identities=20% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304 162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L 240 (257)
. +++.|.+.++... ...+..|.++++|+.|+|++|.+..+|.. ++.+++|++|+|++|.++.+|...|+.+++|
T Consensus 33 ~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 T-DKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp T-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred C-CCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence 5 8999999988764 45678899999999999999999999876 5899999999999999999998743999999
Q ss_pred cEeeccCCCCCcCCC
Q 037304 241 YTLDKPFSYIDHTVD 255 (257)
Q Consensus 241 ~~L~l~~~~l~~lP~ 255 (257)
++|++++|.+.-.|.
T Consensus 108 ~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 108 THIYLYNNPWDCECR 122 (174)
T ss_dssp SEEECCSSCBCTTBG
T ss_pred CEEEeCCCCcccccc
Confidence 999999998775553
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.8e-10 Score=88.53 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=77.7
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcce----EeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 567777777765443 2 234567 8888888777653 34556677888888888888888877654 5778888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|++++|.++.+|..+|..+++|++|++++|.+.
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888888888888775477888888888888754
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=106.80 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=76.8
Q ss_pred cchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCCC
Q 037304 25 DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR 104 (257)
Q Consensus 25 ~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g~ 104 (257)
..+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.+..++++|+++||++... ++.
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~ 431 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGK 431 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCC
Confidence 4789999999999999999999999999999999999999999654 345788999999999998654 234
Q ss_pred eeEEEeChhHHHHHHHhh
Q 037304 105 INTGFIPGRCSPALLTVA 122 (257)
Q Consensus 105 ~~~~~mHdl~~dl~~~i~ 122 (257)
...|+||+++++++....
T Consensus 432 ~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 432 SFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEECCHHHHHHHHHHT
T ss_pred ccEEEEcHHHHHHHHhhh
Confidence 468999999999998773
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=3.1e-10 Score=92.15 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=80.1
Q ss_pred CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304 162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L 240 (257)
+ +++.|.+.++... ...+..|..+++|+.|+|++|.+..+|. .++.+++|++|+|++|.++.+|...|+.+.+|
T Consensus 40 ~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 T-NAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp T-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred C-CCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 5 8999999988764 4567789999999999999999998875 46899999999999999999988765899999
Q ss_pred cEeeccCCCCCcCCCC
Q 037304 241 YTLDKPFSYIDHTVDE 256 (257)
Q Consensus 241 ~~L~l~~~~l~~lP~~ 256 (257)
++|++++|++..+|.+
T Consensus 115 ~~L~Ls~N~l~~lp~~ 130 (229)
T 3e6j_A 115 KELFMCCNKLTELPRG 130 (229)
T ss_dssp CEEECCSSCCCSCCTT
T ss_pred CeEeccCCcccccCcc
Confidence 9999999999999875
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=2.7e-10 Score=95.87 Aligned_cols=111 Identities=20% Similarity=0.037 Sum_probs=79.9
Q ss_pred CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~ 217 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... ...+..|.++++|+.|++++|.+..+|.. +..+++|+
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLT----SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCC----CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCc----ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 456666666655432 2 234566 7777777776653 34556778888888888888888877644 56788888
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+|++++|.++.+|..+|.++++|++|++++|.+..+|.+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 888888888888877657788888888888888888765
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.10 E-value=2.9e-10 Score=94.68 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=67.4
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... +. ...++ +|+.|.+.++... ...+..|..+++|++|++++|.+..+|.. ++.+++|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 455555555554332 11 24455 6666666655442 34445566677777777777777666543 4667777
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|+.+++|++|++++|.+..+|+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 777777777776666544677777777777777666654
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.10 E-value=2.8e-10 Score=93.57 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=81.1
Q ss_pred CcEEEEEEeCCCCcc--c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF--A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... ...+..|..+++|++|+|++|.+..+|.. ++.+++|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 566777776665443 1 235566 7788877776653 44556778888888888888888877654 5778888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|+.+++|++|++++|.+..+|.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 888888888888887433888888888888888877765
No 15
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=2.1e-10 Score=105.31 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=92.3
Q ss_pred cEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304 142 NVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH 220 (257)
Q Consensus 142 ~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~ 220 (257)
.++.|.+.++... ++....++ +|+.|.+.++... .+|..+..+++|+.|+|++|.++.+| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~-~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGT-TCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCcCccccc-cCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 4667777776654 35577788 9999999998763 35678999999999999999999998 899999999999
Q ss_pred ccCCCcccc--chhHHhcCccccEeeccCCCCCcCCCC
Q 037304 221 LNIPSLKSL--PSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 221 l~~~~l~~l--P~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
|++|.++.+ |..+ +.|++|++|++++|.+..+|+.
T Consensus 515 Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 515 LCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccH
Confidence 999999988 8899 9999999999999999888764
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.09 E-value=3.3e-10 Score=93.13 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=68.0
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... .+.+..|..+++|+.|+|++|.+..+|. .++.+++|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLK----SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCC----CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 566666666655443 1 224556 7777777666543 3444556677777777777777776654 56677777
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|++++|.++.+|...|.++++|++|++++|.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 77777777777666643367777777777777654
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=3.7e-10 Score=91.22 Aligned_cols=106 Identities=13% Similarity=-0.006 Sum_probs=58.8
Q ss_pred cEEEEEEeCCCCccc----cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 142 NVKRFTAHGNLNDFA----FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 142 ~~r~L~~~~~~~~~~----~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
.++.|.+..+..... ....++ +|+.|.+.++... .+.+..|.++++|+.|+|++|.+..+| ..++.+++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKIT----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCC----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 345555555544321 133455 6666666655532 334445666666666666666666554 335566666
Q ss_pred cEEEccCCCcccc-chhHHhcCccccEeeccCCCCCcC
Q 037304 217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++|++++|.++.+ |..+ +.+++|++|++++|.+..+
T Consensus 108 ~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEE
Confidence 6666666666655 3334 6666666666666665554
No 18
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=5e-10 Score=88.62 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=63.3
Q ss_pred CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~ 217 (257)
..++.|.+..+.... .....+. +|+.|.+.++... .+.+..|.++++|+.|+|++|.+..+| ..++.+++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~-~L~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYK-HLTLIDLSNNRIS----TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCchhHHHhhccc-CCCEEECCCCcCC----EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 455666666555432 2334455 6666666666543 344455666667777777777666554 3566666777
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
+|+|++|.++.+|...|..+++|++|++++|.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 77777766666666533666677777776664
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=2.4e-10 Score=88.11 Aligned_cols=107 Identities=21% Similarity=0.140 Sum_probs=89.8
Q ss_pred CcEEEEEEeCCCCc---cccc-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCC
Q 037304 141 ENVKRFTAHGNLND---FAFL-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~~---~~~~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~ 215 (257)
..++.|.+..+... ++.. ..++ +|+.|.+.++.... . ..+..+++|++|++++|.+.. +|..++.+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 56788888877654 3333 5678 99999999987642 2 678899999999999999987 7888888999
Q ss_pred CcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCC
Q 037304 216 LRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 216 L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
|++|++++|.++.+| ..+ +.+++|++|++++|.+..+|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTT
T ss_pred CCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHH
Confidence 999999999999987 677 999999999999999887775
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1.4e-10 Score=87.63 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=83.0
Q ss_pred CcEEEEEEeCCCCc---ccc-ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCC
Q 037304 141 ENVKRFTAHGNLND---FAF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~~---~~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~ 215 (257)
..++++.+..+... .+. ...++ +|+.|.+.++.... . ..+..+++|++|++++|.+.. +|..++.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTS----I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCC----C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCC----c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45677777776654 232 35667 89999888876542 2 667888899999999999886 7777778899
Q ss_pred CcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCC
Q 037304 216 LRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 216 L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
|++|++++|.++.+| ..+ +.+++|++|++++|.+..+|.
T Consensus 90 L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTT
T ss_pred CCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHH
Confidence 999999999888775 677 889999999999988877764
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.08 E-value=3e-10 Score=95.59 Aligned_cols=110 Identities=18% Similarity=0.099 Sum_probs=87.5
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~ 218 (257)
..++.|.+..+.... +....++ +|++|.+.++... .++..+..+++|++|++++|.++.+| ..++.+++|++
T Consensus 55 ~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCCEEECTTSCCCEEECCSCCT-TCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred CCCCEEECCCCccCcccCCCCCC-cCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 566777776665543 3335667 8888888887664 24556788899999999999999886 66889999999
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
|++++|.++.+|..+|..+++|+.|++++|++..+|.+
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 99999999999887668899999999999998888864
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=3.1e-10 Score=91.63 Aligned_cols=88 Identities=20% Similarity=0.146 Sum_probs=78.9
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
.++.|.+.++... .+.+..|..+++|+.|+|++|.+..+ |..+..+++|++|+|++|.++.+|..+|..+++|++
T Consensus 33 ~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 8999999988754 45666899999999999999999976 789999999999999999999999987689999999
Q ss_pred eeccCCCCCcCCC
Q 037304 243 LDKPFSYIDHTVD 255 (257)
Q Consensus 243 L~l~~~~l~~lP~ 255 (257)
|++++|.+..+|+
T Consensus 109 L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 109 LLLNANKINCLRV 121 (220)
T ss_dssp EECCSSCCCCCCT
T ss_pred EECCCCCCCEeCH
Confidence 9999999887754
No 23
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.6e-10 Score=87.58 Aligned_cols=86 Identities=22% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304 162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L 240 (257)
. .++.|.+.++... .+.+..|.++++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|...|+++++|
T Consensus 30 ~-~l~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 T-TTQVLYLYDNQIT----KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104 (170)
T ss_dssp T-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred C-CCcEEEcCCCcCC----ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCC
Confidence 5 8999999988764 45678899999999999999999988765 5899999999999999999998744999999
Q ss_pred cEeeccCCCCCc
Q 037304 241 YTLDKPFSYIDH 252 (257)
Q Consensus 241 ~~L~l~~~~l~~ 252 (257)
++|++++|.+.-
T Consensus 105 ~~L~L~~N~~~c 116 (170)
T 3g39_A 105 THIWLLNNPWDC 116 (170)
T ss_dssp CEEECCSSCBCT
T ss_pred CEEEeCCCCCCC
Confidence 999999997653
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.06 E-value=4.8e-10 Score=95.99 Aligned_cols=103 Identities=18% Similarity=0.093 Sum_probs=51.6
Q ss_pred CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHh---------hccCcccceEEEeCCCCccCchh
Q 037304 141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKI---------CKMFKFLRVLDLGSLVLIRYPFE 209 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~L~~~~l~~lp~~ 209 (257)
..++.|.+..+.... + ....++ +|+.|.+.++.... ..|.. |.++++|++|++++|.+..+|..
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLN-RLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred CCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 455666666554432 2 334455 66666665533210 11111 22355555555555555555555
Q ss_pred cCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304 210 IENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 210 i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
++.+++|++|++++|.+..+|..+ +++++|++|++++|.
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCT 240 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEECTTCT
T ss_pred hcCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEECcCCc
Confidence 555555555555555555555555 555555555555544
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.05 E-value=3.8e-10 Score=96.66 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=92.0
Q ss_pred CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCC-----
Q 037304 141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIEN----- 212 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~----- 212 (257)
..+++|.+..+.... + ....++ +|+.|.+.++... .+|..+.++++|++|++++|. +..+|..++.
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFA-GLETLTLARNPLR-----ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGT-TCSEEEEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred CCCCEEECCCCCccchhHHHhccC-CCCEEECCCCccc-----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 678889998877553 3 356778 9999999988763 356779999999999999977 5578887765
Q ss_pred ----CCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 213 ----LFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 213 ----L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+++|++|++++|.++.+|.++ +++++|++|++++|.+..+|+.
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASI-ANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGG-GGCTTCCEEEEESSCCCCCCGG
T ss_pred hhccCCCCCEEECcCCCcCcchHhh-cCCCCCCEEEccCCCCCcCchh
Confidence 999999999999999999999 9999999999999998888764
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=1.2e-10 Score=110.09 Aligned_cols=106 Identities=23% Similarity=0.180 Sum_probs=85.4
Q ss_pred CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 218 (257)
..++.|.+..+.... .....++ +|++|.+.++... .+|..|..+++|++|+|++|.+..+|..++.|++|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYD-FLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred CCCcEEECCCCCCCCCChhhcCCC-CCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 566777777766542 2445677 8888888887653 3556788899999999999998888999999999999
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
|+|++|.++.+|.++ ++|.+|++|+|++|.+...
T Consensus 298 L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSH
T ss_pred EECCCCCCCccChhh-hcCCCccEEeCCCCccCCC
Confidence 999999999999988 9999999999999887643
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=8.5e-10 Score=91.66 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLK----SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccC----eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 445555555444332 1 123445 6666666555432 23445566667777777777776666543 5667777
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|.++++|++|++++|.+..+|.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 777777777766665533667777777777776666654
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=9.7e-10 Score=87.01 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=63.0
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~ 218 (257)
..++.|.+..+.... +....++ +|+.|.+.++... ...+..+..+++|++|++++|.+.. .|..++.+++|++
T Consensus 66 ~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp TTCSEEEEESCCCSCCGGGTTCT-TCCEEEEECTTCB----GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred CCCCEEEccCCCCCcchhhhcCC-CCCEEEeECCccC----cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 455666666554332 3444555 6666666665442 2233445666666666666666653 4566666666666
Q ss_pred EEccCCC-ccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 219 LHLNIPS-LKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 219 L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
|++++|. +..+| .+ +.+++|++|++++|.+..+|
T Consensus 141 L~L~~n~~i~~~~-~l-~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 141 IDLSYNGAITDIM-PL-KTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp EECCSCTBCCCCG-GG-GGCSSCCEEECTTBCCCCCT
T ss_pred EEccCCCCccccH-hh-cCCCCCCEEECCCCCCcChH
Confidence 6666665 66665 45 66666666666666655543
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=6.5e-10 Score=87.94 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=77.7
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
+++.|.+.++... .++..|..+++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|...|+.+++|++
T Consensus 32 ~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 8999999988764 34478999999999999999999886 57999999999999999999998754499999999
Q ss_pred eeccCCCCCcCCCC
Q 037304 243 LDKPFSYIDHTVDE 256 (257)
Q Consensus 243 L~l~~~~l~~lP~~ 256 (257)
|+|++|.+..+|.+
T Consensus 107 L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 107 LSLHGNDISVVPEG 120 (193)
T ss_dssp EECCSSCCCBCCTT
T ss_pred EECCCCCCCeeChh
Confidence 99999999988864
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=2.7e-10 Score=107.64 Aligned_cols=93 Identities=27% Similarity=0.184 Sum_probs=80.8
Q ss_pred ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304 158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSL 237 (257)
Q Consensus 158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L 237 (257)
...+. .|+.|.+.++... .++..+..+++|+.|+|++|.+..+|..++.|++|++|+|++|.++.+|.++ ++|
T Consensus 220 ~~~l~-~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l 292 (727)
T 4b8c_D 220 KYDDQ-LWHALDLSNLQIF-----NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSC 292 (727)
T ss_dssp --CCC-CCCEEECTTSCCS-----CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGG
T ss_pred hccCC-CCcEEECCCCCCC-----CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCC
Confidence 44567 8999999888763 2344455899999999999999999999999999999999999999999999 999
Q ss_pred ccccEeeccCCCCCcCCCCC
Q 037304 238 LNLYTLDKPFSYIDHTVDEF 257 (257)
Q Consensus 238 ~~L~~L~l~~~~l~~lP~~i 257 (257)
.+|++|+|++|.+..+|.+|
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp TTCSEEECCSSCCCCCCSST
T ss_pred CCCCEEECCCCCCCccChhh
Confidence 99999999999999999754
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.03 E-value=1e-09 Score=91.23 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=75.4
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..++.|.+..+.... +. ...++ +|++|.+.++... ...+..|..+++|+.|++++|.+..+| ..++.+++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQ----ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCC----CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCC----cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 556666666554332 11 23456 7777777666543 344556777788888888888877665 446778888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|+.+++|++|++++|.+..+|.
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 888888888888877644788888888888887777664
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.03 E-value=5.6e-10 Score=94.90 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=52.9
Q ss_pred cEEEEEEeCCCCc----c-ccccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCC
Q 037304 142 NVKRFTAHGNLND----F-AFLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLF 214 (257)
Q Consensus 142 ~~r~L~~~~~~~~----~-~~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~ 214 (257)
++++|.+.++... . .....++ +|+.|.+.+ +... ...|..|.++++|++|++++|.+. .+|..+++++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred eEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 4555555554432 1 2334455 556665553 3221 223444555555555555555554 4455555555
Q ss_pred CCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCCC
Q 037304 215 LLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 215 ~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+|++|++++|.+. .+|..+ +++++|++|++++|.+.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRIS 162 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCE
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCccc
Confidence 5555555555554 455555 55555555555555544
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.02 E-value=1.2e-09 Score=87.16 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=78.8
Q ss_pred CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304 161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLN 239 (257)
Q Consensus 161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~ 239 (257)
.+ +++.|.+.++... ...+..|..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|...|+++++
T Consensus 27 ~~-~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PA-QTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CT-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CC-CCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 45 8999999988754 45567789999999999999999988754 688999999999999999998875589999
Q ss_pred ccEeeccCCCCCcCCCC
Q 037304 240 LYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 240 L~~L~l~~~~l~~lP~~ 256 (257)
|++|++++|.+..+|..
T Consensus 102 L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCEEECCSSCCCCCCTT
T ss_pred CCEEEcCCCcCcccCHh
Confidence 99999999998888763
No 34
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=4.9e-10 Score=87.10 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=48.9
Q ss_pred cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch--hcCCCCCCcE
Q 037304 142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF--EIENLFLLRY 218 (257)
Q Consensus 142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~L~~ 218 (257)
.++.|.+..+.... .....++ +|+.|.+.++... ..++..|..+++|++|++++|.+..+|. .++.+++|++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCC----EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred CCCEEECCCCCCCcccccccCC-CCCEEECCCCccc----ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence 44444444443322 2333344 5555555544432 2223334555555555555555555544 4555555555
Q ss_pred EEccCCCccccchh----HHhcCccccEeeccCCC
Q 037304 219 LHLNIPSLKSLPSS----LLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 219 L~l~~~~l~~lP~~----i~~~L~~L~~L~l~~~~ 249 (257)
|++++|.+..+|.. + +.+++|++||+++|.
T Consensus 118 L~l~~N~i~~~~~~~~~~~-~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 118 LCILRNPVTNKKHYRLYVI-YKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSSGGGGSTTHHHHHH-HHCTTCSEETTEECC
T ss_pred EEecCCCCCCcHhHHHHHH-HHCCccceeCCCcCC
Confidence 55555555555543 3 555555555555543
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.02 E-value=5.3e-10 Score=102.95 Aligned_cols=108 Identities=18% Similarity=0.028 Sum_probs=86.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..+++|.+..+.... ....+++ +|+.|.+.++... .+.+..|.++++|++|+|++|.++.+| ..+++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 578888888877654 2356778 8999999887653 456678899999999999999998887 457889999
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++|++++|.++.+|+..|++|++|++|++++|.+..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 9999999999888875338999999999999887644
No 36
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=1e-09 Score=85.31 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304 161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLN 239 (257)
Q Consensus 161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~ 239 (257)
.+ +++.|.+.++... ...+..|..+++|++|++++|.+..+|.. ++.+++|++|++++|.++.+|...|+++++
T Consensus 27 ~~-~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PS-SATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CT-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CC-CCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 35 8999999988753 45566789999999999999999988754 689999999999999999998875589999
Q ss_pred ccEeeccCCCCCcCCCC
Q 037304 240 LYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 240 L~~L~l~~~~l~~lP~~ 256 (257)
|++|++++|.+..+|.+
T Consensus 102 L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDG 118 (177)
T ss_dssp CCEEECCSSCCSCCCTT
T ss_pred cCEEECcCCcceEeCHH
Confidence 99999999999888864
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=2.4e-09 Score=84.74 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=89.9
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCCCcE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~ 218 (257)
..++++.+..+.... +....++ +|++|.+.++... ....+..+++|+.|++++|.+.. .|..++.+++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHAT------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCS------CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCC------cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 678889888876553 5667788 9999999988553 22478899999999999999885 6888999999999
Q ss_pred EEccCCCccc-cchhHHhcCccccEeeccCCC-CCcCC
Q 037304 219 LHLNIPSLKS-LPSSLLNSLLNLYTLDKPFSY-IDHTV 254 (257)
Q Consensus 219 L~l~~~~l~~-lP~~i~~~L~~L~~L~l~~~~-l~~lP 254 (257)
|++++|.+.. .|..+ +++++|++|++++|. +..+|
T Consensus 117 L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 117 LDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp EECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG
T ss_pred EEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH
Confidence 9999999884 77888 999999999999998 77776
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.00 E-value=5.8e-10 Score=102.69 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=75.0
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... + ...+++ +|++|.+.++... ..++..|.++++|++|++++|.++.+|. .++++++|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCC----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 566777777765543 1 245566 7778777776543 4555677778888888888887777754 47777888
Q ss_pred cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+.. +|..+ +.+++|++|++++|++..++
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEEC
T ss_pred CeeccccCccccCCCchhh-ccchhhhhhcccCccccccc
Confidence 888888777653 46666 77788888888877766554
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.00 E-value=8e-10 Score=87.28 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=80.6
Q ss_pred CcEEEEEEeCCCCcc-c-c--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A-F--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~-~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~ 215 (257)
..++.|.+..+.... + . ...++ +|+.|.+.++... ...+..|.++++|+.|+|++|.+..+| ..++.+++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCC----CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 467788887776543 2 1 45677 8888888887754 455677888889999999999888765 45788889
Q ss_pred CcEEEccCCCcccc-chhHHhcCccccEeeccCCCCC
Q 037304 216 LRYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 216 L~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~ 251 (257)
|++|++++|.++.+ |..+ +.+++|++|++++|.+.
T Consensus 104 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCcc
Confidence 99999999888866 5556 88889999999888754
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.00 E-value=1.3e-09 Score=90.58 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... +. ...++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQ----SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccC----ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 445555555444332 11 23444 5555555555432 23334455555555555555555544432 3555555
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
++|++++|.++.+|+..|+++++|++|++++|.
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 555555555555554433555555555555554
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.99 E-value=1.1e-09 Score=94.82 Aligned_cols=109 Identities=21% Similarity=0.167 Sum_probs=68.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... .+.+..|..+++|+.|+|++|.+..+ |..+..+++|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLH----TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCC----cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 445566665554432 1234555 6666666666542 34455667777777777777777655 5667777777
Q ss_pred cEEEccCCCccccchhHH---hcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKSLPSSLL---NSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~---~~L~~L~~L~l~~~~l~~lP 254 (257)
++|+|++|.++.+|..+| +++++|++|+|++|.+..+|
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 777777777777777664 35777777777777776665
No 42
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=88.23 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=89.5
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|..+++|+.|+|++|.+..+ |..++.+++|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLE----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccC----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 678888888877654 2456778 9999999988764 45677899999999999999999977 6889999999
Q ss_pred cEEEccCCCcccc-chhHHhcCccccEeeccCCCCC
Q 037304 217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|++++|.++.+ |..+ ..+++|++|++++|.+.
T Consensus 132 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAF-DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SEEECTTSCCCCBCTTTT-TTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCEECHHHh-cCCCCCCEEEecCcCCc
Confidence 9999999999988 5666 99999999999998753
No 43
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=1.2e-09 Score=86.30 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=74.3
Q ss_pred CccEEEeecCCCCCCCcccch-HhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCcccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCE-KICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY 241 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~ 241 (257)
.++.|.+.++... ...+ ..|..+++|+.|+|++|.++.+ |..++.+++|++|++++|.++.+|...|+.+++|+
T Consensus 30 ~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 8999999888764 2333 3589999999999999999977 78899999999999999999988876438999999
Q ss_pred EeeccCCCCCcCC
Q 037304 242 TLDKPFSYIDHTV 254 (257)
Q Consensus 242 ~L~l~~~~l~~lP 254 (257)
+|++++|++..++
T Consensus 106 ~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 106 TLNLYDNQISCVM 118 (192)
T ss_dssp EEECCSSCCCEEC
T ss_pred EEECCCCcCCeeC
Confidence 9999999987653
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=1.1e-09 Score=94.93 Aligned_cols=110 Identities=20% Similarity=0.061 Sum_probs=91.3
Q ss_pred CcEEEEEEeCCCCcc--cc-cc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCC
Q 037304 141 ENVKRFTAHGNLNDF--AF-LD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~~-~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~ 215 (257)
..++.|.+..+.... +. .. .++ +|+.|.+.++... .+.+..|..+++|+.|+|++|.+..+|. .+..+++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLN----FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCC----ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 557788888877654 22 23 778 9999999988754 4566789999999999999999998864 6889999
Q ss_pred CcEEEccCCCccccc-hhHHhcCccccEeeccCCCCCcCCCC
Q 037304 216 LRYLHLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 216 L~~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
|++|+|++|.+..++ ..+ ..+++|+.|+|++|.+..+|..
T Consensus 114 L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGG
T ss_pred CCEEECCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHH
Confidence 999999999999885 456 9999999999999999988753
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.96 E-value=8.9e-10 Score=101.50 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=60.7
Q ss_pred CcEEEEEEeCCCCcc--c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF--A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..+++|.+..+.... + ...+++ +|++|.+.++... ...+..|.++++|++|++++|.+..+| ..++++++|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 445555555443332 1 223445 5555555555432 233455666666666666666665554 556666666
Q ss_pred cEEEccCCCcc--ccchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLK--SLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+. .+|..+ +++++|++|++++|.+..+|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEEC
T ss_pred CEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecC
Confidence 66666666655 356666 66667777777666655543
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.96 E-value=1.8e-09 Score=90.23 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=64.4
Q ss_pred CcEEEEEEeCCC-Ccc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCC
Q 037304 141 ENVKRFTAHGNL-NDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~-~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~ 215 (257)
..++.|.+..+. ... .....++ +|+.|.+.++... ...+..+..+++|+.|++++|.+..+|. .++.+++
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQ----ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCC----EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 445555555543 221 1233445 6666666555432 2344556667777777777777666653 3666777
Q ss_pred CcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 216 LRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 216 L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
|++|++++|.++.+|...|..+++|++|++++|.+..+
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 77777777777766664226777777777777765544
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.96 E-value=1.5e-09 Score=94.80 Aligned_cols=109 Identities=20% Similarity=0.144 Sum_probs=55.6
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..++++.+..+.... +. ...++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+| ..++.+++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCC-CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccc-cCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 455556655544332 21 23445 5666665555432 233345555555555555555555442 334555555
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.++.+|..+|+++++|++|++++|.+..+|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 55555555555555553355555555555555544443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=2.6e-09 Score=91.09 Aligned_cols=109 Identities=16% Similarity=-0.032 Sum_probs=80.7
Q ss_pred CcEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L 219 (257)
..++.+.+..+........-.+ +|+.|.+.++... ...+..|..+++|+.|++++|.+..++ ..++.+++|++|
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCCT-TCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCcCEEECCCCccccCCccccc-cCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 4455555555443321111124 6667766666542 345677889999999999999988665 478889999999
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++++|.+..+|..+ +.+++|++|++++|.+..+|.
T Consensus 246 ~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 246 HLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp ECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCT
T ss_pred ECCCCcCccCChhh-ccCCCcCEEECCCCcCCccCh
Confidence 99999999999998 999999999999999888775
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.93 E-value=1.5e-09 Score=84.41 Aligned_cols=107 Identities=17% Similarity=0.069 Sum_probs=88.1
Q ss_pred CcEEEEEEeCCCCcc-ccccC-CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhc-CCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF-AFLDH-FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEI-ENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~-~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~ 217 (257)
..++.|.+.++.... +.... .+ +|+.|.+.++... .. ..+..+++|++|++++|.+..+|..+ +.+++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~-~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTT-CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCchhHHhhhcCC-CCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 567788887766543 33322 34 8999999988764 22 57889999999999999999988665 8999999
Q ss_pred EEEccCCCccccch--hHHhcCccccEeeccCCCCCcCCC
Q 037304 218 YLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 218 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
+|++++|.+..+|. .+ +.+++|++|++++|.+..+|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTT
T ss_pred EEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHh
Confidence 99999999999998 77 999999999999999888775
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.93 E-value=3e-09 Score=88.88 Aligned_cols=111 Identities=22% Similarity=0.149 Sum_probs=77.8
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++.. .....+..|..+++|+.|++++|.+..+ |..++.+++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ---LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC---ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 566677776655432 2344566 777777776652 1234456777888888888888887766 5667788888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++|++++|.++.+|...|+++++|++|++++|++..+|.
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 888888888887776633788888888888888776664
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.92 E-value=3.1e-09 Score=86.55 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=64.3
Q ss_pred CcEEEEEEeCCC-Cc-cc--cccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCC
Q 037304 141 ENVKRFTAHGNL-ND-FA--FLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~-~~-~~--~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~ 215 (257)
..++.|.+..+. .. .+ ...+++ +|+.|.+.+ +... .+.+..|.++++|+.|++++|.+..+|. ++.+++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~----~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLT----YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS 128 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCC----EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCee----EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence 556666666664 32 22 234556 677776665 4432 3444556666667777776666666665 555555
Q ss_pred Cc---EEEccCC-CccccchhHHhcCcccc-EeeccCCCCCcCCC
Q 037304 216 LR---YLHLNIP-SLKSLPSSLLNSLLNLY-TLDKPFSYIDHTVD 255 (257)
Q Consensus 216 L~---~L~l~~~-~l~~lP~~i~~~L~~L~-~L~l~~~~l~~lP~ 255 (257)
|+ +|++++| .++.+|...|+.+.+|+ +|++++|.+..+|.
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 55 6666666 56666654336666666 66666666655554
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.92 E-value=2.5e-09 Score=93.33 Aligned_cols=107 Identities=13% Similarity=-0.020 Sum_probs=80.7
Q ss_pred cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304 142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH 220 (257)
Q Consensus 142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~ 220 (257)
.++.|.+..+.... +....++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+|..++.+++|++|+
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYP-GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCC----EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred cccEEECCCCCCcccHHHcCCC-CccEEECCCCcCC----CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence 34455554444332 3345566 7788877777543 4556778888889999999888888888888888899999
Q ss_pred ccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
+++|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus 302 L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 302 LSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred CCCCcceecCccc-cccCcCCEEECCCCccceeC
Confidence 9998888888888 88889999999888877665
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.4e-09 Score=99.87 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=75.0
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
.++.|.+.++... . +|. +..+++|+.|+|++|.+..+|..++.+++|++|+|++|.++.+| ++ ++|++|++|
T Consensus 442 ~L~~L~Ls~n~l~----~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLT----V-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCS----S-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEE
T ss_pred CceEEEecCCCCC----C-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEE
Confidence 5778888887654 2 344 89999999999999999999999999999999999999999999 88 999999999
Q ss_pred eccCCCCCcC--CCC
Q 037304 244 DKPFSYIDHT--VDE 256 (257)
Q Consensus 244 ~l~~~~l~~l--P~~ 256 (257)
+|++|.+..+ |..
T Consensus 514 ~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 514 LLCNNRLQQSAAIQP 528 (567)
T ss_dssp ECCSSCCCSSSTTGG
T ss_pred ECCCCCCCCCCCcHH
Confidence 9999999887 543
No 54
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=1.1e-09 Score=82.49 Aligned_cols=88 Identities=19% Similarity=0.085 Sum_probs=75.2
Q ss_pred CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccc-cchhHHhcCcc
Q 037304 161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKS-LPSSLLNSLLN 239 (257)
Q Consensus 161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~i~~~L~~ 239 (257)
.+ +++.|.+.++... ....+..+..+++|+.|++++|.+..+ ..++.+++|++|++++|.++. +|..+ +++++
T Consensus 16 ~~-~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~ 89 (149)
T 2je0_A 16 PS-DVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPN 89 (149)
T ss_dssp GG-GCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTT
T ss_pred Cc-cCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCC
Confidence 35 8999999888653 124456788999999999999999888 789999999999999999987 78777 88999
Q ss_pred ccEeeccCCCCCcCC
Q 037304 240 LYTLDKPFSYIDHTV 254 (257)
Q Consensus 240 L~~L~l~~~~l~~lP 254 (257)
|++|++++|.+..+|
T Consensus 90 L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 90 LTHLNLSGNKIKDLS 104 (149)
T ss_dssp CCEEECTTSCCCSHH
T ss_pred CCEEECCCCcCCChH
Confidence 999999999987654
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.91 E-value=2.7e-09 Score=88.76 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=62.3
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|++|.+.++... ...+..|.++++|+.|++++|.+..++. .++.+++|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred cCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccC----ccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 445555555544332 1 234455 6666666655432 3344556666666666666666665543 46666666
Q ss_pred cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+.. +|..+ +++++|++|++++|.+..+|
T Consensus 127 ~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEEC
T ss_pred CEEECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCC
Confidence 666666666654 56666 66666666666666655443
No 56
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=4.2e-09 Score=81.85 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=61.0
Q ss_pred cccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 191 KFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 191 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
++|++|+|++|.+..+ |..++.+++|++|+|++|.++.+|..+|+++++|++|+|++|++..+|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 7899999999999987 67899999999999999999999998658999999999999999998864
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=97.09 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=67.3
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..+++|.+..+.... ....+++ +|++|.+.++... ...+..|.++++|++|++++|.+..+|. .++++++|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCC----ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 445555555544332 1233455 6666666555432 3444566677777777777777666654 57777777
Q ss_pred cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+.. +|..+ +++++|++|++++|.+..+|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEEC
T ss_pred cEEecCCCccceecChhhh-cccCCCCEEeCcCCccceec
Confidence 777777777664 57777 77777777777777766543
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.88 E-value=4.2e-09 Score=98.33 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=83.7
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..+++|.+..+.... .....++ +|++|.+.++... ...+..|.++++|++|++++|.+..+|. .++++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 577888888776543 2356677 8899988877643 4556778888899999999888888875 58888889
Q ss_pred cEEEccCCCccccch-hHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+..+|+ .+ +++++|++|++++|.+...|
T Consensus 100 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCccCccChhHc-cccCCCCEEECCCCcccccC
Confidence 999998888888774 45 88888888888888766554
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.87 E-value=4e-09 Score=97.13 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=88.1
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..+++|.+..+.... ....+++ +|++|.+.++... ...+..|.++++|++|++++|.+..+ |..++++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 678888888876553 2456778 8999998887653 45677888999999999999998877 7889999999
Q ss_pred cEEEccCCCccccc-hhHHhcCccccEeeccCCCCC--cCCC
Q 037304 217 RYLHLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYID--HTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~--~lP~ 255 (257)
++|++++|.+..+| ..+ +++.+|++|++++|.+. ++|.
T Consensus 107 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~ 147 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPA 147 (606)
T ss_dssp CEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred CEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechH
Confidence 99999999988887 566 99999999999999876 4565
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.87 E-value=5.7e-09 Score=92.68 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=41.4
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
+|+.|.+.++... ...+..|..+++|++|++++|.+..+ |..++.+++|++|++++|.++.+|..+|+.+++|++
T Consensus 324 ~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 324 HLLKLNLSQNFLG----SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TCCEEECCSSCCC----EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCCccC----CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 4444444444321 23344455555555555555555533 444555555555555555555555443345555555
Q ss_pred eeccCCCC
Q 037304 243 LDKPFSYI 250 (257)
Q Consensus 243 L~l~~~~l 250 (257)
|++++|.+
T Consensus 400 L~l~~N~l 407 (455)
T 3v47_A 400 IWLHTNPW 407 (455)
T ss_dssp EECCSSCB
T ss_pred EEccCCCc
Confidence 55555543
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.87 E-value=3.9e-09 Score=87.73 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=89.8
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|.++++|+.|++++|.+..++ ..++.+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 568888888776553 2456678 9999999888653 456668899999999999999998765 778999999
Q ss_pred cEEEccCCCccccch-hHHhcCccccEeeccCCCCCc--CCC
Q 037304 217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDH--TVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~ 255 (257)
++|++++|.+..++. .+ +++++|++|++++|.+.. +|.
T Consensus 103 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred cEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCch
Confidence 999999999998877 56 999999999999999876 454
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.87 E-value=3.5e-09 Score=91.20 Aligned_cols=102 Identities=24% Similarity=0.177 Sum_probs=55.2
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... + ....++ +|++|.+.++... ...+..|.++++|++|++++|.++.+|.. ++++++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 355556555554332 1 234455 6666666555432 23344555566666666666665555543 5556666
Q ss_pred cEEEccCCCccccch--hHHhcCccccEeeccCC
Q 037304 217 RYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~ 248 (257)
++|++++|.++.+|. .+ +++++|++|++++|
T Consensus 127 ~~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n 159 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNM 159 (353)
T ss_dssp SEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEES
T ss_pred CEEECCCCCCcccCchhhh-ccCCCCcEEECCCC
Confidence 666666665555555 33 55556666666555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.87 E-value=5.3e-09 Score=88.88 Aligned_cols=109 Identities=11% Similarity=-0.089 Sum_probs=67.7
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHh-hccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKI-CKMFKFLRVLDLGSLVLIRYPFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+.. +..+++|++|++++|.+..+|.. ..+++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred CCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCC----cccHHHHhhccCcCCEEECCCCcCcccccc-cccccC
Confidence 345566665555432 1233455 6777777666542 222333 34667777777777777766543 346777
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
++|++++|.++.+|+.+ +.+++|++|++++|.+..+|..
T Consensus 194 ~~L~Ls~N~l~~l~~~~-~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTT
T ss_pred CEEECCCCcCCcchhhh-cccCcccEEECcCCcccchhhH
Confidence 77777777777777776 7777777777777777666653
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=4.4e-09 Score=97.09 Aligned_cols=107 Identities=13% Similarity=-0.020 Sum_probs=83.6
Q ss_pred cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304 142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH 220 (257)
Q Consensus 142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~ 220 (257)
.++.|.+..+.... +....++ +|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|..++.+++|++|+
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYP-GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCC----EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred CCCEEECCCCCCCCChhhccCC-CCCEEECCCCccC----CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence 34555555544332 3445667 8888888777643 4567788889999999999999888888888899999999
Q ss_pred ccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
+++|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus 308 Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 308 LSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence 9999998999988 88999999999999877665
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.86 E-value=2.4e-09 Score=90.94 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=78.6
Q ss_pred CcEEEEEEeC-CCCc--c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCC
Q 037304 141 ENVKRFTAHG-NLND--F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~-~~~~--~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~ 215 (257)
..++.|.+.+ +... . .....++ +|+.|.+.++... ...+..|.++++|++|++++|.+. .+|..++.+++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 6677777773 4332 2 2455677 8888888777652 345667788888888888888877 67778888888
Q ss_pred CcEEEccCCCcc-ccchhHHhcCc-cccEeeccCCCCC-cCCC
Q 037304 216 LRYLHLNIPSLK-SLPSSLLNSLL-NLYTLDKPFSYID-HTVD 255 (257)
Q Consensus 216 L~~L~l~~~~l~-~lP~~i~~~L~-~L~~L~l~~~~l~-~lP~ 255 (257)
|++|++++|.+. .+|..+ +++. +|++|++++|.+. .+|.
T Consensus 151 L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCG
T ss_pred CCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCCh
Confidence 888888888877 778887 7777 7888888887755 4443
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.86 E-value=5.2e-09 Score=85.14 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=89.8
Q ss_pred CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCC-CCCCCcccchHhhccCcccceEEEeC-CCCccCc-hhcCCCC
Q 037304 141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSG-SHYLNPTYCEKICKMFKFLRVLDLGS-LVLIRYP-FEIENLF 214 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~L~ 214 (257)
..++.|.+..+.... + ....++ +|++|.+.++. .. .+.+..|.++++|+.|++++ |.++.+| ..+..++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 578888888887654 2 355778 99999999886 42 45566889999999999998 8899886 5788999
Q ss_pred CCcEEEccCCCccccchhHHhcCcccc---EeeccCC-CCCcCCCC
Q 037304 215 LLRYLHLNIPSLKSLPSSLLNSLLNLY---TLDKPFS-YIDHTVDE 256 (257)
Q Consensus 215 ~L~~L~l~~~~l~~lP~~i~~~L~~L~---~L~l~~~-~l~~lP~~ 256 (257)
+|++|++++|.++.+|. + +.+.+|+ +|++++| .+..+|..
T Consensus 106 ~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-L-TKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TCCEEEEEEECCCSCCC-C-TTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred CCCEEeCCCCCCccccc-c-ccccccccccEEECCCCcchhhcCcc
Confidence 99999999999999998 6 8888888 9999999 78877753
No 67
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=7.7e-09 Score=80.01 Aligned_cols=85 Identities=16% Similarity=0.065 Sum_probs=69.1
Q ss_pred ccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 165 LHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 165 Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
.+++.+.++.... + |..+ .+.|+.|+|++|.++.+ |..++.+++|++|+|++|.++.+|..+|..+++|++|
T Consensus 11 ~~~l~~s~n~l~~----i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS----V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS----C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc----c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3456666655431 2 2222 37899999999999988 6779999999999999999999999876899999999
Q ss_pred eccCCCCCcCCCC
Q 037304 244 DKPFSYIDHTVDE 256 (257)
Q Consensus 244 ~l~~~~l~~lP~~ 256 (257)
+|++|++..+|++
T Consensus 84 ~L~~N~l~~~~~~ 96 (170)
T 3g39_A 84 SLNDNQLKSIPRG 96 (170)
T ss_dssp ECCSSCCCCCCTT
T ss_pred ECCCCccCEeCHH
Confidence 9999999988864
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.86 E-value=5.4e-09 Score=93.13 Aligned_cols=102 Identities=23% Similarity=0.160 Sum_probs=52.0
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|.++++|+.|+|++|.+..+|. .++.+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccC----CcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 445566665554432 2234455 6666666655432 3344555556666666666666555543 25555556
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF 247 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~ 247 (257)
++|++++|.++.+|...|.++++|++|++++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 6666655555555443224444444444433
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.85 E-value=4.7e-09 Score=95.77 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=80.1
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 216 (257)
..+++|.+..+.... .....++ +|++|.+.++... ...+..|.++++|++|++++|.+..+| ..++.+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 567777777766543 2445677 8888888777543 455667788888888888888877664 678888888
Q ss_pred cEEEccCCCccccch-hHHhcCccccEeeccCCCCCc--CCC
Q 037304 217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDH--TVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~ 255 (257)
++|++++|.++.+|. .+ +++++|++|++++|.+.. +|.
T Consensus 103 ~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~ 143 (570)
T 2z63_A 103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPE 143 (570)
T ss_dssp CEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred ccccccccccccCCCccc-cccccccEEecCCCccceecChh
Confidence 888888888887776 45 888888888888887664 454
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.85 E-value=6.3e-09 Score=96.01 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=63.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ..++..|.++++|++|+|++|.+..+|.. ++.+++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 345555555544332 1334555 6666666655532 34455566667777777777766666654 3666777
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+..+|+..|+++++|++|++++|.+..+|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 77777776666555432266677777777766655443
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.84 E-value=6.6e-09 Score=92.25 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=46.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..+++|.+..+.... .....++ +|+.|.+.++.. ...+.+..|.++++|++|++++|.+..+ |..++++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCc-cccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 344555555444332 1233444 555555554433 1122234444455555555555554433 4444445555
Q ss_pred cEEEccCCCccc-cchh--HHhcCccccEeeccCCCCC
Q 037304 217 RYLHLNIPSLKS-LPSS--LLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 217 ~~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~ 251 (257)
++|++++|.++. +|.. + +++++|++|++++|.+.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCC
T ss_pred CEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccC
Confidence 555555444442 2222 3 44444444444444443
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.84 E-value=9e-09 Score=91.39 Aligned_cols=102 Identities=23% Similarity=0.167 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... .+.+..|.++++|+.|+|++|.++.+|. .+..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIR----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCC----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCC----ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 445556665555432 2334455 6666666655432 3344555666666666666666655543 45556666
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF 247 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~ 247 (257)
++|++++|.++.+|...|.++++|++|++++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 6666666555555442224444444444433
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.84 E-value=1.1e-08 Score=86.64 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=79.9
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... . ..+..+++|+.|++++|.+..+|. ++.+++|++|
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLT-KITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCC-SCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred CCCCEEEccCCcCCCChhHccCC-CCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence 677778777766543 3466677 88888888776542 1 357788888888888888887765 8888888888
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.++.+|. + +.+++|++|++++|.+..+|
T Consensus 135 ~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 135 YLDLNQITNISP-L-AGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp ECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCG
T ss_pred ECCCCccCcCcc-c-cCCCCccEEEccCCcCCCCh
Confidence 888888888876 6 88888999999888877665
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.82 E-value=8.1e-09 Score=93.08 Aligned_cols=109 Identities=11% Similarity=-0.106 Sum_probs=75.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhh-ccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC-KMFKFLRVLDLGSLVLIRYPFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..+ ..+++|+.|+|++|.+..+|. ...+++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKL 193 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCC----CcChHHHhhhCCcccEEecCCCccccccc-cccCCCC
Confidence 456677776665442 2334566 7778777777653 2334444 367888888888888776654 3357888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
++|++++|.++.+|+++ +.+++|++|++++|.+..+|..
T Consensus 194 ~~L~Ls~N~l~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTT
T ss_pred CEEECCCCCCCCCCHhH-cCCCCccEEEecCCcCcccchh
Confidence 88888888888888887 8888888888888887777754
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.82 E-value=3.4e-09 Score=90.54 Aligned_cols=87 Identities=21% Similarity=0.070 Sum_probs=70.2
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
+|+.|.+.++... ...+..+..+++|+.|++++|.+..++ ..++.+++|++|++++|.++.+|..+ +.+++|++
T Consensus 194 ~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l-~~l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL-PDLKLLQV 268 (332)
T ss_dssp SCSCCBCCSSCCC----CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG-GGCTTCCE
T ss_pred CCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh-hcCccCCE
Confidence 5666666655442 344567888899999999999988775 47888999999999999999999998 99999999
Q ss_pred eeccCCCCCcCCC
Q 037304 243 LDKPFSYIDHTVD 255 (257)
Q Consensus 243 L~l~~~~l~~lP~ 255 (257)
|++++|.+..+|.
T Consensus 269 L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 269 VYLHTNNITKVGV 281 (332)
T ss_dssp EECCSSCCCBCCT
T ss_pred EECCCCCCCccCh
Confidence 9999998887764
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=1.7e-08 Score=85.56 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=86.5
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... . + .+..+++|+.|++++|.+..+|. ++.+++|++|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~----~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 85 TKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQITD----V-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL 156 (308)
T ss_dssp CSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCCC----C-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred CCCCEEEccCCcCCCchhhcCCC-CCCEEECCCCCCCC----c-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE
Confidence 678888888876553 5566778 99999998887642 2 2 38899999999999999988876 8889999999
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.++.+|. + +++++|+.|++++|.+..+|
T Consensus 157 ~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 157 SIGNAQVSDLTP-L-ANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG
T ss_pred EccCCcCCCChh-h-cCCCCCCEEECCCCccCcCh
Confidence 999999998888 6 89999999999999887765
No 77
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=5e-09 Score=89.96 Aligned_cols=91 Identities=18% Similarity=0.011 Sum_probs=71.0
Q ss_pred cccccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchh
Q 037304 155 FAFLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSS 232 (257)
Q Consensus 155 ~~~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~ 232 (257)
+|....+. +|+.|.+.+ +.. ..+.+..|.++++|+.|+|++|.+..+| ..+++|++|++|+|++|.+..+|..
T Consensus 24 ip~l~~~~-~L~~L~l~~~n~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 24 LHHLPGAE-NLTELYIENQQHL----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp TTTSCSCS-CCSEEECCSCSSC----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred cCCCCCCC-CeeEEEccCCCCC----CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 34455566 788998875 654 3566678889999999999999988765 5678899999999999999999888
Q ss_pred HHhcCccccEeeccCCCCC
Q 037304 233 LLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 233 i~~~L~~L~~L~l~~~~l~ 251 (257)
+|..+ .|+.|+|.+|.+.
T Consensus 99 ~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp TTCSC-CCCEEECCSSCCC
T ss_pred HcccC-CceEEEeeCCCcc
Confidence 73444 4999999888764
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.81 E-value=1.7e-08 Score=84.81 Aligned_cols=103 Identities=19% Similarity=0.092 Sum_probs=44.9
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... . ..+..+++|+.|++++|.+..+ ..++.+++|++|
T Consensus 90 ~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~----~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 90 KNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISD----I--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp TTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCC----C--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred CCCCEEECCCCcCCCChhhccCC-CCCEEECCCCcCCC----C--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence 344444444443322 2333444 55555544443321 1 2334444444444444444443 234444444444
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++++|.++.+|. + +.+++|++|++++|.+..+
T Consensus 162 ~L~~N~l~~~~~-l-~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 162 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBC
T ss_pred EccCCccccchh-h-cCCCccCEEECCCCcCCCC
Confidence 444444444443 3 4444444444444444333
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.81 E-value=8.1e-09 Score=93.39 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=85.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~ 217 (257)
..+++|.+..+.... .....++ +|++|.+.++... ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccChhhccccc-cccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 678888888877553 2456788 9999999988753 46678899999999999999999988877 899999
Q ss_pred EEEccCCCccc--cchhHHhcCccccEeeccCCCCC
Q 037304 218 YLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 218 ~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+|++++|.++. +|..+ +++++|++|++++|.+.
T Consensus 94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCC
T ss_pred EEeccCCccccccchhhh-ccCCcceEEEecCcccc
Confidence 99999999875 57888 99999999999998764
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.80 E-value=6.9e-09 Score=94.33 Aligned_cols=108 Identities=21% Similarity=0.112 Sum_probs=61.0
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 216 (257)
..+++|.+..+.... .....++ +|++|.+.++... ...+..|.++++|++|++++|.+..+|.. ++++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 455666666555432 1234555 6666666665432 34445566666666666666666655433 6666666
Q ss_pred cEEEccCCCccc--cchhHHhcCccccEeeccCCC-CCcCC
Q 037304 217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSY-IDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~-l~~lP 254 (257)
++|++++|.++. .|..+ +++++|++|++++|. +..+|
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEEC
T ss_pred cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccC
Confidence 666666666553 34455 666666666666655 44444
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.80 E-value=6.7e-09 Score=87.55 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=72.2
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ....+..+..+++|+.|++++|.+..+ |..++.+++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccc---cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 455666665554332 1233455 6777776665431 113456677788888888888887765 5677788888
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++|++++|.+..+|...++.+++|++|++++|.+...
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 8888888887777663337788888888888876543
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.80 E-value=1.1e-08 Score=88.21 Aligned_cols=88 Identities=19% Similarity=0.008 Sum_probs=78.2
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
+++.|.+.++... ...+..|.++++|+.|++++|.+..+ |..++++++|++|++++|.++.+|...|+++++|++
T Consensus 53 ~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 8999999888754 45556899999999999999999977 567999999999999999999999884499999999
Q ss_pred eeccCCCCCcCCC
Q 037304 243 LDKPFSYIDHTVD 255 (257)
Q Consensus 243 L~l~~~~l~~lP~ 255 (257)
|++++|.+..+|.
T Consensus 129 L~L~~n~l~~l~~ 141 (353)
T 2z80_A 129 LNLLGNPYKTLGE 141 (353)
T ss_dssp EECTTCCCSSSCS
T ss_pred EECCCCCCcccCc
Confidence 9999999888876
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=97.65 Aligned_cols=105 Identities=23% Similarity=0.190 Sum_probs=45.8
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..+++|.+..+.... .....+. +|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..++++++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 445555555544332 2233444 555555554422 1122234444444444444444444433 4444444444
Q ss_pred cEEEccCCCccc-cchh--HHhcCccccEeeccCCCC
Q 037304 217 RYLHLNIPSLKS-LPSS--LLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 217 ~~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l 250 (257)
++|++++|.+.. +|.. + ++|++|++|++++|.+
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQI 135 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCC
T ss_pred CEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcc
Confidence 444444444432 2322 3 4444444444444443
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=2.3e-08 Score=82.86 Aligned_cols=102 Identities=23% Similarity=0.080 Sum_probs=71.7
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... .+. +.. ++|+.|++++|.+..+| .++.+++|++|
T Consensus 63 ~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEE
T ss_pred CCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCC-----cCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEE
Confidence 566777776665443 3355666 77777777766532 111 222 77888888888877765 47888888888
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++++|.++.+| .+ +.+++|++|++++|.+..+
T Consensus 134 ~Ls~N~i~~~~-~l-~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 134 SIRNNKLKSIV-ML-GFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp ECTTSCCCBCG-GG-GGCTTCCEEECTTSCCCBC
T ss_pred ECCCCcCCCCh-HH-ccCCCCCEEECCCCcCcch
Confidence 88888888886 56 8888888888888877654
No 85
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.1e-08 Score=98.09 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=76.3
Q ss_pred CcEEEEEEeCCCCc--cc-cccCCCCCccEEEeecCC-CCCCCcc-cchHhhccCc-------ccceEEEeCCCCccCch
Q 037304 141 ENVKRFTAHGNLND--FA-FLDHFDSFLHSLLHLTSG-SHYLNPT-YCEKICKMFK-------FLRVLDLGSLVLIRYPF 208 (257)
Q Consensus 141 ~~~r~L~~~~~~~~--~~-~~~~~~~~Lrsl~l~~~~-~~~~~~~-~~~~~~~~l~-------~Lr~L~L~~~~l~~lp~ 208 (257)
..++.|.+..+... .| ....++ +|+.|.+.++. .. . ..|..+..++ +|+.|++++|.+..+|.
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 66788888877532 23 456777 88888888776 32 2 3444444444 77888888777777777
Q ss_pred --hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 209 --EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 209 --~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
.++++++|++|++++|.+..+| .+ +++++|+.|++++|.+..+|.+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~ 613 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPED 613 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHH
Confidence 7777777777777777777777 66 7777777777777776677654
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=1.2e-08 Score=93.91 Aligned_cols=107 Identities=15% Similarity=-0.028 Sum_probs=79.0
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..+++|.+..+.... ....+++ +|++|.+.++... ...+..|.++++|++|++++|.+..+ |..++.+++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCccCcCChhHhccCc-cceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 567777777776553 2445677 8888888877643 45567788888888888888887754 6778888888
Q ss_pred cEEEccCCCcccc-chhHHhcCccccEeeccCCCCCcC
Q 037304 217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++|++++|.++.+ |..+ +++++|++|++++|.+..+
T Consensus 108 ~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp CEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCCCCC
T ss_pred cEeeccccCcccCCcchh-ccCCcccEEECCCCccccc
Confidence 8888888888777 4555 7888888888888877655
No 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.78 E-value=1.3e-08 Score=91.10 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=48.5
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|.++++|+.|+|++|.+..+|. .++++++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCCC-CCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 344555555444332 1233444 5555555554332 2334445555555555555555554443 23445555
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l 250 (257)
++|++++|.+..+++..|+++++|++|++++|.+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 5555555554433222114444444444444443
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.77 E-value=1.6e-08 Score=92.50 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=85.2
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~ 217 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 677888888876553 2456778 9999999888653 45677889999999999999999988877 899999
Q ss_pred EEEccCCCccccc--hhHHhcCccccEeeccCCCCCc
Q 037304 218 YLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDH 252 (257)
Q Consensus 218 ~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~ 252 (257)
+|++++|.+..+| ..+ +++++|++|++++|.+..
T Consensus 125 ~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT
T ss_pred EEECCCCCccccCchHhh-cccCcccEEecCCCcccc
Confidence 9999999988765 677 999999999999987653
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=2.6e-08 Score=83.69 Aligned_cols=104 Identities=22% Similarity=0.122 Sum_probs=83.3
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... + +.+..+++|+.|++++|.+..++ .++.+++|++|
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL 139 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred CCCCEEEccCCccCCCcccccCC-CCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEE
Confidence 677888887776543 3466777 89999888877641 2 34888999999999999988774 58889999999
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.++.+ +.+ +++++|++|++++|.+..+|
T Consensus 140 ~l~~n~l~~~-~~l-~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 140 YLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp ECCSSCCCCC-GGG-GGCTTCSEEECCSSCCCCCG
T ss_pred EccCCcCCcc-hhh-ccCCCCCEEEccCCccccch
Confidence 9999998888 567 89999999999999887765
No 90
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.77 E-value=1.6e-08 Score=90.08 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=78.4
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
+++.|.+.++... ...+..|.++++|+.|+|++|.+..++ ..+.++++|++|+|++|.++.+|...|+.+++|++
T Consensus 76 ~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 76 NTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 8999999988753 566788999999999999999999764 78999999999999999999999875489999999
Q ss_pred eeccCCCCCcCCC
Q 037304 243 LDKPFSYIDHTVD 255 (257)
Q Consensus 243 L~l~~~~l~~lP~ 255 (257)
|++++|.+..+|.
T Consensus 152 L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 152 LWLRNNPIESIPS 164 (452)
T ss_dssp EECCSCCCCEECT
T ss_pred EECCCCCcceeCH
Confidence 9999999887775
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.76 E-value=1.6e-08 Score=91.43 Aligned_cols=84 Identities=18% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304 162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L 240 (257)
+ +++.|.+.++... ...+..|.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|.. .+++|
T Consensus 21 ~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L 92 (520)
T 2z7x_B 21 Q-KTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNL 92 (520)
T ss_dssp T-TCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCC
T ss_pred c-cccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCc
Confidence 6 9999999988764 45668899999999999999999977 78999999999999999999999986 79999
Q ss_pred cEeeccCCCCCcC
Q 037304 241 YTLDKPFSYIDHT 253 (257)
Q Consensus 241 ~~L~l~~~~l~~l 253 (257)
++|++++|.+..+
T Consensus 93 ~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 93 KHLDLSFNAFDAL 105 (520)
T ss_dssp SEEECCSSCCSSC
T ss_pred cEEeccCCccccc
Confidence 9999999998753
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.76 E-value=3.1e-08 Score=84.53 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=78.9
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~ 217 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|.++++|+.|++++|.+..+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 567778777766543 2356677 8888888877653 4556778888899999999888888887766 6888
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+|++++|.+..+|...|+++++|++|++++|.+.
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 8888888888887764478888888888887764
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.76 E-value=1.3e-08 Score=96.59 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=80.3
Q ss_pred cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhc
Q 037304 159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNS 236 (257)
Q Consensus 159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~ 236 (257)
..+. .++.|.+.++... +..|..+..++.|++|+|++|.+. .+|.+++.+++|++|+|++|.++ .+|.++ ++
T Consensus 629 ~~l~-~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~ 702 (768)
T 3rgz_A 629 DNNG-SMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SA 702 (768)
T ss_dssp SSSB-CCCEEECCSSCCB----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-GG
T ss_pred hccc-cccEEECcCCccc----ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-hC
Confidence 3456 8889999888753 467788999999999999999988 88999999999999999999987 889999 99
Q ss_pred CccccEeeccCCCCC-cCCC
Q 037304 237 LLNLYTLDKPFSYID-HTVD 255 (257)
Q Consensus 237 L~~L~~L~l~~~~l~-~lP~ 255 (257)
+++|++|++++|++. .+|.
T Consensus 703 l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECcCCcccccCCC
Confidence 999999999999865 6775
No 94
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.75 E-value=1.5e-08 Score=90.69 Aligned_cols=87 Identities=26% Similarity=0.218 Sum_probs=77.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT 242 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~ 242 (257)
.++.|.+.++... ...+..|.++++|+.|+|++|.+..+ |..++++++|++|++++|.++.+|...|+++++|++
T Consensus 33 ~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 8999999988754 45677899999999999999999876 789999999999999999999999875589999999
Q ss_pred eeccCCCCCcCC
Q 037304 243 LDKPFSYIDHTV 254 (257)
Q Consensus 243 L~l~~~~l~~lP 254 (257)
|++++|.+..++
T Consensus 109 L~Ls~n~i~~~~ 120 (477)
T 2id5_A 109 LDISENKIVILL 120 (477)
T ss_dssp EECTTSCCCEEC
T ss_pred EECCCCccccCC
Confidence 999999877654
No 95
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.75 E-value=1.1e-08 Score=86.34 Aligned_cols=107 Identities=21% Similarity=0.167 Sum_probs=60.6
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~ 217 (257)
..+++|.+..+.... +. ...++ +|+.|.+.++... .....+..+..+++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC--EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccC--cccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 456666666655432 21 34566 7777777666542 111123444556666666666666666665566666666
Q ss_pred EEEccCCCccccch--hHHhcCccccEeeccCCCCC
Q 037304 218 YLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 218 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~ 251 (257)
+|++++|.+..+|. .+ +++++|++|++++|.+.
T Consensus 105 ~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTR 139 (306)
T ss_dssp EEECTTSEEESSTTTTTT-TTCTTCCEEECTTSCCE
T ss_pred EEECCCCcccccccchhh-hhccCCCEEECCCCcCC
Confidence 66666666555553 34 55666666666655544
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.75 E-value=2e-08 Score=91.84 Aligned_cols=102 Identities=15% Similarity=-0.004 Sum_probs=84.5
Q ss_pred EEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEc
Q 037304 144 KRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHL 221 (257)
Q Consensus 144 r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l 221 (257)
+++.+.++.... |... .+ +++.|.+.++... ...+..|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~-~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PP-RTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CT-TCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCC-CC-CcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 566666555442 3322 26 9999999988764 45667899999999999999999977 688999999999999
Q ss_pred cCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 222 NIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 222 ~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|.++.+|.. .+++|++|++++|.+..+|
T Consensus 108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp TTSCCCEECSC---CCTTCSEEECCSSCCSBCC
T ss_pred CCCcCCccCcc---ccccCCEEECCCCCccccC
Confidence 99999999986 7999999999999988765
No 97
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.74 E-value=9.5e-09 Score=95.60 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCCc--cc-cccCCCCCccEEEeecCC-CCCCCcc-cchHhhccC------cccceEEEeCCCCccCch-
Q 037304 141 ENVKRFTAHGNLND--FA-FLDHFDSFLHSLLHLTSG-SHYLNPT-YCEKICKMF------KFLRVLDLGSLVLIRYPF- 208 (257)
Q Consensus 141 ~~~r~L~~~~~~~~--~~-~~~~~~~~Lrsl~l~~~~-~~~~~~~-~~~~~~~~l------~~Lr~L~L~~~~l~~lp~- 208 (257)
..+++|.+..+... .| ....++ +|+.|.+.++. .. . ..|..+..+ ++|++|++++|.+..+|.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~----~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGIS----GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTTSC----HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred CCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCCCc----cccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 56778888877533 23 445677 88888887776 31 2 344555554 777777777777777777
Q ss_pred -hcCCCCCCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 209 -EIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 209 -~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
.++++++|++|++++|.+. .+| .+ +++++|++|++++|.+..+|.+
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~ 371 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPAN 371 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHh
Confidence 7777777777777777766 666 55 6666666666666665555543
No 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.73 E-value=2.7e-08 Score=88.30 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=52.2
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch---------
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF--------- 208 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~--------- 208 (257)
..++.|.+..+.... ....+++ +|+.|.+.++... .+.+..|..+++|+.|++++|.+..+|.
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS----SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC----eeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 445555555544332 1233445 5566655555432 2333345555555555555555544432
Q ss_pred -----------------hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 209 -----------------EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 209 -----------------~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
.+..+++|++|++++|.++.+|. + ..+.+|++|++++|.+..+
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TTCSSCCEEECTTSCCCEE
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CCCcccCEEECCCCccCcc
Confidence 34445555555555555555553 3 4555555555555554443
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.73 E-value=5.1e-09 Score=88.66 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=43.7
Q ss_pred hccCcccceEEEeCCCCccC-chhcCCC---CCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 187 CKMFKFLRVLDLGSLVLIRY-PFEIENL---FLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~l-p~~i~~L---~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
+..+++|+.|+|++|.+... |..++.+ ++|++|++++|.++.+|..+ . ++|++|++++|++..+|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCc
Confidence 45667777777777776654 6666655 47777777777777777766 3 67777777777766554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.73 E-value=3.5e-08 Score=91.21 Aligned_cols=65 Identities=20% Similarity=0.112 Sum_probs=36.1
Q ss_pred hhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 186 ICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..+| .+ +.|++|+.|+|++|.+...
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l-~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL-AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG-TTCTTCSEEECCSEEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH-ccCCCCCEEEccCCcCcCC
Confidence 44555555555555555555444 555555666666665555553 34 5566666666665554433
No 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=3.3e-08 Score=84.79 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=64.3
Q ss_pred chHhhccCcccceEEEeC-CCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 183 CEKICKMFKFLRVLDLGS-LVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+|. +..+++|+.|+|++ |.+..+| ..++.|++|++|+|++|.++.+|+..|++|.+|+.|+|++|++..+|++
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 445 88899999999997 8899886 6799999999999999999988876559999999999999999999864
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.3e-08 Score=95.94 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=91.5
Q ss_pred CcEEEEEEeCCCCc-------------------cccc-c--CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEE
Q 037304 141 ENVKRFTAHGNLND-------------------FAFL-D--HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDL 198 (257)
Q Consensus 141 ~~~r~L~~~~~~~~-------------------~~~~-~--~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L 198 (257)
..++.|.+..+... +|.. . .++ +|+.|.+.++... ...|..|.++++|+.|++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNM----TQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTC----CSCCGGGGGCSSCCEEEC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCC----ccChHHHhCCCCCCEEEC
Confidence 67889999887654 3332 2 678 9999999988643 356688999999999999
Q ss_pred eCCC-Ccc--CchhcCCCC-------CCcEEEccCCCccccch--hHHhcCccccEeeccCCCCCcCC
Q 037304 199 GSLV-LIR--YPFEIENLF-------LLRYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 199 ~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|. ++. +|..++.++ +|++|++++|.+..+|. .+ +++++|++|++++|.+..+|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch
Confidence 9998 874 898887776 99999999999999999 88 99999999999999988888
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.70 E-value=2.7e-08 Score=94.43 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=74.0
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...|..+..+++|++|++++|.+. .+|..++.+++|
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 344555555544331 2233455 6666666665542 345667777888888888888876 677888888888
Q ss_pred cEEEccCCCcc-ccchhHHhcCccccEeeccCCCCC-cCCC
Q 037304 217 RYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYID-HTVD 255 (257)
Q Consensus 217 ~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~ 255 (257)
++|++++|.+. .+|..+ +++++|++|++++|.+. .+|.
T Consensus 517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCG
T ss_pred CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCCh
Confidence 88888888766 777777 88888888888888754 6664
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.70 E-value=3.2e-08 Score=88.47 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=76.1
Q ss_pred CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.+.+...... .+....++ +|+.|.+.++... ... . +..+++|+.|++++|.+..+|. ++++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~-~L~~L~Ls~n~l~----~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLT----DIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCC----CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCcchhhhc-CCCEEECCCCccC----Cch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 56677777665543 24455677 8888888877653 222 2 7788888888888888887766 8888888888
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.++.+|. + +++++|++|++++|.+..+|
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCG
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCCh
Confidence 888888888776 6 78888888888887765554
No 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.70 E-value=2.1e-08 Score=93.30 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=91.4
Q ss_pred CcEEEEEEeCCCCc-------------------cc-ccc--CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEE
Q 037304 141 ENVKRFTAHGNLND-------------------FA-FLD--HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDL 198 (257)
Q Consensus 141 ~~~r~L~~~~~~~~-------------------~~-~~~--~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L 198 (257)
..++.|.+..+... .| ... .++ +|+.|.+.++... ...|..+.++++|++|++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNL----TKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTC----SSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCC----ccChHHHhcCCCCCEEEC
Confidence 67888888887643 22 233 678 9999999988753 356688999999999999
Q ss_pred eCCC-Cc--cCchhcCCC------CCCcEEEccCCCccccch--hHHhcCccccEeeccCCCCC-cCC
Q 037304 199 GSLV-LI--RYPFEIENL------FLLRYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID-HTV 254 (257)
Q Consensus 199 ~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~-~lP 254 (257)
++|. ++ .+|..++.+ ++|++|++++|.++.+|. .+ +++++|++|++++|.+. .+|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh
Confidence 9998 88 489999887 999999999999999999 88 99999999999999988 887
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.69 E-value=6.2e-08 Score=82.93 Aligned_cols=104 Identities=20% Similarity=0.075 Sum_probs=55.4
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+.++.... +....++ +|++|.+.++.... . +.+..+++|+.|++++|.+..+|. +..+++|++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred CCccEEEccCCccccchhhhcCC-cCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 455555555544332 2344455 56666655554321 1 235556666666666666655554 5566666666
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
++++|.....+..+ +.+++|++|++++|.+..+
T Consensus 138 ~l~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 138 NLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp ECTTCTTCCCCGGG-TTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCcccccch-hhCCCCcEEEecCCCcCCc
Confidence 66666432233335 6666666666666655444
No 107
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.69 E-value=3.3e-08 Score=89.85 Aligned_cols=87 Identities=22% Similarity=0.007 Sum_probs=76.2
Q ss_pred CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304 162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L 240 (257)
+ ++++|.+.++... ...+..|.++++|++|++++|.+..+| ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus 26 ~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 A-AMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp T-TCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred C-CccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 5 8999999988753 455678999999999999999998765 789999999999999999998888733999999
Q ss_pred cEeeccCCCCCcC
Q 037304 241 YTLDKPFSYIDHT 253 (257)
Q Consensus 241 ~~L~l~~~~l~~l 253 (257)
++|++++|.+..+
T Consensus 101 ~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 101 KYLNLMGNPYQTL 113 (549)
T ss_dssp CEEECTTCCCSSS
T ss_pred cEEECCCCccccc
Confidence 9999999998744
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.67 E-value=4.5e-08 Score=83.40 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR 217 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~ 217 (257)
..++.|.+..+.... .....++ +|++|.+.++... ...+..|..+++|+.|++++|.+..+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 567788887776543 2356677 8999998887653 4556788899999999999999988887766 6899
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+|++++|.+..+|...|+++++|++|++++|.+.
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 9999999988887765599999999999998865
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=85.49 Aligned_cols=113 Identities=14% Similarity=0.015 Sum_probs=62.5
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccc-hHhhccCcccceEEEeCCCCccCchh----cCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYC-EKICKMFKFLRVLDLGSLVLIRYPFE----IEN 212 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~l~~lp~~----i~~ 212 (257)
..+++|.+..+.... .....++ +|++|.+.++.... ..... +..+..+++|++|++++|.++.+|.. ++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFP-ALTSLDLSDNPGLG-ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCT-TCCEEECCSCTTCH-HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCC-CCCEEECCCCCCcc-chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 345555555554432 1223455 66666666554310 00011 11234566677777777766554432 355
Q ss_pred CCCCcEEEccCCCcccc-chhHHhcC---ccccEeeccCCCCCcCCCC
Q 037304 213 LFLLRYLHLNIPSLKSL-PSSLLNSL---LNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 213 L~~L~~L~l~~~~l~~l-P~~i~~~L---~~L~~L~l~~~~l~~lP~~ 256 (257)
+++|++|++++|.+..+ |+.+ +.+ ++|++|++++|++.++|..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred CCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhh
Confidence 66777777777776655 6666 555 4777777777777676654
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.66 E-value=2.2e-08 Score=90.26 Aligned_cols=109 Identities=13% Similarity=-0.027 Sum_probs=83.3
Q ss_pred CcEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcC-CCCCCcE
Q 037304 141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIE-NLFLLRY 218 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~-~L~~L~~ 218 (257)
..++.|.+..+.........++ +|+.|.+.++... ...+..+..+++|+.|+|++|.+.. .|..+. .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~-~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCS-SCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCccccC-CCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 4556666666555443334567 8888888877653 4556678889999999999999885 466665 7899999
Q ss_pred EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
|+|++|.++.+|... .+++|++|++++|.+..+|++
T Consensus 174 L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 174 LNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp EECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG
T ss_pred EecCCCccccccccc--cCCCCCEEECCCCCCCCCCHh
Confidence 999999999887654 699999999999998887753
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=6.1e-08 Score=89.62 Aligned_cols=104 Identities=19% Similarity=0.081 Sum_probs=89.7
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..+++|.+..+.... +....++ +|+.|.+.++.... + ..+..+++|+.|+|++|.+..+ ..++.+++|+.|
T Consensus 87 ~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDLSSLKDLK-KLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp TTCCEEECCSSCCCCCTTSTTCT-TCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred CCCCEEECcCCCCCCChhhccCC-CCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence 678899988877554 5667788 99999999887642 2 4588999999999999999988 679999999999
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
+|++|.+..+++ + +.+++|+.|+|++|.+..+|
T Consensus 159 ~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 159 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG
T ss_pred ECcCCcCCCchh-h-ccCCCCCEEECcCCCCCCCh
Confidence 999999998877 7 99999999999999987775
No 112
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.65 E-value=5.2e-08 Score=82.53 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLRYLHLNIPSLKSLPSSLLNSL 237 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L 237 (257)
.++ +|+.|.+.++.... ........+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++.+|..+ .
T Consensus 199 ~l~-~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~-- 273 (312)
T 1wwl_A 199 KFP-TLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-P-- 273 (312)
T ss_dssp SCT-TCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC-C--
T ss_pred cCC-CCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc-c--
Confidence 344 55555555444320 01122233445556666666666655433 33444556666666666666666655 3
Q ss_pred ccccEeeccCCCCCcCC
Q 037304 238 LNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 238 ~~L~~L~l~~~~l~~lP 254 (257)
++|++|++++|++..+|
T Consensus 274 ~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp SEEEEEECCSSCCCSCC
T ss_pred CCceEEECCCCCCCCCh
Confidence 56666666666655554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.64 E-value=5.1e-08 Score=80.69 Aligned_cols=103 Identities=14% Similarity=0.030 Sum_probs=86.0
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +.... . +|+.|.+.++.... . ..+..+++|+.|++++|.++.+| .++.+++|++|
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~-~-~L~~L~L~~N~l~~-----~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS-A-CLSRLFLDNNELRD-----T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL 155 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC-S-SCCEEECCSSCCSB-----S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE
T ss_pred CCCCEEECCCCccCCcCcccc-C-cccEEEccCCccCC-----C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEE
Confidence 678888888887654 33333 7 99999999987642 2 35889999999999999999887 68999999999
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.+..+ ..+ +.+++|++|++++|.+...|
T Consensus 156 ~L~~N~i~~~-~~l-~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 156 DLHGNEITNT-GGL-TRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ECTTSCCCBC-TTS-TTCCCCCEEEEEEEEEECCC
T ss_pred ECCCCcCcch-HHh-ccCCCCCEEeCCCCcccCCc
Confidence 9999999988 667 99999999999999866555
No 114
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.64 E-value=7.3e-08 Score=89.92 Aligned_cols=67 Identities=27% Similarity=0.426 Sum_probs=30.7
Q ss_pred hccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304 187 CKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
|..+++|++|++++|.+..+|. .++.+++|++|++++|.++.+|...|..+++|++|++++|++..+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 3344444444444444444442 244444444444444444444444334444555555554444443
No 115
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.64 E-value=3.7e-08 Score=83.41 Aligned_cols=113 Identities=16% Similarity=0.039 Sum_probs=79.1
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhh--ccCcccceEEEeCCCCccCc---hh-cC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC--KMFKFLRVLDLGSLVLIRYP---FE-IE 211 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~l~~lp---~~-i~ 211 (257)
..+++|.+..+.... .....++ +|+.|.+.++.... ....+..+ ..+++|+.|++++|.+..+| .. +.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~--~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPELG--ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCS-SCCEEECCSCTTCH--HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCC-CCCEEECCCCCcCc--chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 467777777776543 2345677 88898888876420 00012233 78889999999999888443 22 35
Q ss_pred CCCCCcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCCCC
Q 037304 212 NLFLLRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVDEF 257 (257)
Q Consensus 212 ~L~~L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~~i 257 (257)
.+++|++|++++|.+...+ ..+ ..+++|++|++++|.+.++|..+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSCCSSC
T ss_pred cCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChhhhhc
Confidence 6788999999999887655 334 66889999999999888888753
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.63 E-value=1.3e-07 Score=80.90 Aligned_cols=105 Identities=22% Similarity=0.120 Sum_probs=69.5
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+.++.... +....++ +|+.|.+.++.... . ..+..+++|+.|++++|.+..+| .++.+++|++|
T Consensus 221 ~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 292 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISD----I--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL 292 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC----C--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred CcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCC----C--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEE
Confidence 455666665554432 3345556 67777776665431 1 35677777888888888777664 46777888888
Q ss_pred EccCCCccccc-hhHHhcCccccEeeccCCCCCcCC
Q 037304 220 HLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 220 ~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++++|.+...+ ..+ +.+++|++|++++|.+..+|
T Consensus 293 ~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp ECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCG
T ss_pred ECcCCcCCCcChhHh-hccccCCEEEccCCcccccc
Confidence 88888776544 445 78888888888888776654
No 117
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.61 E-value=6.8e-08 Score=81.98 Aligned_cols=103 Identities=21% Similarity=0.039 Sum_probs=85.1
Q ss_pred CcEEEEEEeCCCCcc--c-cc-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF--A-FL-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~--~-~~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L 216 (257)
..++.|.+..+.... + .. ..++ +|+.|.+.++... .. .....+++|+.|++++|.+..+|..+..+++|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~----~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY----DV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC----EE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCc----cc--ccccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 678999988877653 2 22 3567 9999999988764 22 22335889999999999999998889999999
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|++++|.++.+|..+ +.+++|+.|++++|.+.
T Consensus 217 ~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCB
T ss_pred cEEECcCCcccchhhHh-hcCCCCCEEEccCCCcc
Confidence 99999999999999998 99999999999999865
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.59 E-value=4e-09 Score=83.46 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=74.5
Q ss_pred cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304 157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS 236 (257)
Q Consensus 157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~ 236 (257)
....++ +|+.|.+.++... . .+ .+..+++|+.|++++|.+..+|..++.+++|++|++++|.++.+| .+ ++
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~----~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~ 113 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIE----K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EK 113 (198)
T ss_dssp HHHHTT-TCSEEECSEEEES----C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HH
T ss_pred HHhcCC-CCCEEECCCCCCc----c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-cc
Confidence 345677 8999999887653 2 33 778899999999999999999988888899999999999999888 67 89
Q ss_pred CccccEeeccCCCCCcCC
Q 037304 237 LLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~lP 254 (257)
+++|++|++++|.+..+|
T Consensus 114 l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp HHHSSEEEESEEECCCHH
T ss_pred CCCCCEEECCCCcCCchh
Confidence 999999999999877654
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=1.3e-07 Score=84.44 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +....++ +|+.|.+.++.... . + +..+++|++|++++|.+..+| ++.+++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCT-TCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCcccChhhcccC-CCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 344444444433221 2333444 55555554444321 1 1 344444455555544444443 4444444444
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++++|.++.+| + +++++|++|++++|.+.
T Consensus 112 ~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 112 NCDTNKLTKLD--V-SQNPLLTYLNCARNTLT 140 (457)
T ss_dssp ECCSSCCSCCC--C-TTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCeec--C-CCCCcCCEEECCCCccc
Confidence 44444444443 3 44444444444444443
No 120
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.54 E-value=1.1e-07 Score=87.46 Aligned_cols=68 Identities=19% Similarity=0.017 Sum_probs=31.7
Q ss_pred hhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCcccc--EeeccCCCCCcC
Q 037304 186 ICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY--TLDKPFSYIDHT 253 (257)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~--~L~l~~~~l~~l 253 (257)
.+.++++|+.|++++|.+..++ ..+..+++|++|++++|.+..++...|+.+.+|+ +|++++|.+..+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 3444555555555555544331 2222255555555555555444322225555555 555555554443
No 121
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.52 E-value=2.3e-07 Score=88.94 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=83.2
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 216 (257)
..++.|.+..+.... .....++ +|+.|.+.++... ...+..|..+++|+.|++++|.+..+ |..++.+++|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCC----EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred CCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCC----CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 356777776655432 2345667 8888888887653 45567788899999999999998766 6788899999
Q ss_pred cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
++|++++|.+..+|...|+.+++|++|++++|.+..+|
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 99999999888887654388899999999988876654
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=2.1e-09 Score=85.11 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=83.0
Q ss_pred CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+... ++....++ +|+.|.+.++... .++..+..+++|+.|++++|.+..+| .++.+++|++|
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~-~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHT-TCCEEEEEEEEEC-----SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred CCCCEEECCCCCCccccccccCC-CCCEEECCCCCcc-----cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 45666766555432 24556677 9999999988653 24567777899999999999999887 68899999999
Q ss_pred EccCCCccccch--hHHhcCccccEeeccCCCCC
Q 037304 220 HLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 220 ~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~ 251 (257)
++++|.+..+|. .+ +.+++|++|++++|.+.
T Consensus 121 ~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEECCCHHHHHHH-TTTTTCSEEEECSCHHH
T ss_pred ECCCCcCCchhHHHHH-hcCCCCCEEEecCCccc
Confidence 999999998876 67 99999999999999764
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.50 E-value=4.6e-07 Score=80.90 Aligned_cols=62 Identities=26% Similarity=0.267 Sum_probs=28.4
Q ss_pred hccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 187 CKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+..+++|+.|++++|.+..+|. ++.+++|++|++++|.++.+|. + +.+++|+.|++++|.+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-I-SNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-G-GGCTTCSEEECCSSCCS
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-h-cCCCCCCEEECcCCcCC
Confidence 3444444444444444444433 4444444444444444444433 3 44444444444444433
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.48 E-value=2.4e-07 Score=79.70 Aligned_cols=112 Identities=14% Similarity=-0.089 Sum_probs=73.3
Q ss_pred CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccCchhcCCCCCC
Q 037304 141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRYPFEIENLFLL 216 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L 216 (257)
.+++.+.+..+.... +. ..... ++..+.+.+... ...+.+..|..+. .++.|++++|.++.+|..+....+|
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~~~~---i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNIN---IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEEESCTT---CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred cccccccccccccccCCchhhcccc-hhhhhhhccccc---cccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 456666666554432 11 12223 444444443322 2233444555554 5788888888888888877777788
Q ss_pred cEEEccC-CCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304 217 RYLHLNI-PSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE 256 (257)
Q Consensus 217 ~~L~l~~-~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~ 256 (257)
+.|++++ +.++.+|...|..+++|++|++++|+++.+|.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 8888875 568888876658888888888888888888764
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.45 E-value=2.8e-07 Score=82.33 Aligned_cols=86 Identities=17% Similarity=0.048 Sum_probs=74.8
Q ss_pred cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304 157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS 236 (257)
Q Consensus 157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~ 236 (257)
....++ ++++|.+.++... .. + .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| + ++
T Consensus 37 ~~~~l~-~L~~L~Ls~n~l~----~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~ 104 (457)
T 3bz5_A 37 SEEQLA-TLTSLDCHNSSIT----DM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TP 104 (457)
T ss_dssp EHHHHT-TCCEEECCSSCCC----CC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TT
T ss_pred ChhHcC-CCCEEEccCCCcc----cC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CC
Confidence 345677 9999999988764 22 3 6889999999999999999886 899999999999999999986 7 99
Q ss_pred CccccEeeccCCCCCcCC
Q 037304 237 LLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 237 L~~L~~L~l~~~~l~~lP 254 (257)
+++|++|++++|.+..+|
T Consensus 105 l~~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD 122 (457)
T ss_dssp CTTCCEEECCSSCCSCCC
T ss_pred CCcCCEEECCCCcCCeec
Confidence 999999999999987765
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=2.7e-07 Score=84.63 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=34.7
Q ss_pred cccceEEEeCCCCccCchhcCCCCCC-------cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304 191 KFLRVLDLGSLVLIRYPFEIENLFLL-------RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L-------~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
++|+.|+|++|.++.+|. +.. +| ++|++++|.++.+|.++ +++++|++|++++|.+.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLS 243 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCC
T ss_pred CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCC
Confidence 556666666666666655 443 45 66666666666666666 66666666666666654
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.41 E-value=5e-07 Score=82.88 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=77.2
Q ss_pred cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304 142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH 220 (257)
Q Consensus 142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~ 220 (257)
.++.|.+..+.... +. .++ +|+.|.+.++.... ++. .+++|+.|+|++|.+..+|. ++ ++|++|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPA-LLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred CCCEEECCCCcCCCCCC--cCc-cccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 66777777766543 33 667 89999998887642 222 57899999999999999998 76 8999999
Q ss_pred ccCCCccccchhHHhcCccc-------cEeeccCCCCCcCCCC
Q 037304 221 LNIPSLKSLPSSLLNSLLNL-------YTLDKPFSYIDHTVDE 256 (257)
Q Consensus 221 l~~~~l~~lP~~i~~~L~~L-------~~L~l~~~~l~~lP~~ 256 (257)
+++|.++.+|. + +. +| ++|++++|.+..+|.+
T Consensus 187 Ls~N~L~~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 187 VSTNLLESLPA-V-PV--RNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp CCSSCCSSCCC-C-C----------CCEEEECCSSCCCCCCGG
T ss_pred CcCCCCCchhh-H-HH--hhhcccccceEEecCCCcceecCHH
Confidence 99999999999 7 65 77 9999999999999974
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.40 E-value=1.8e-07 Score=79.57 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=71.6
Q ss_pred CcEEEEEEeCCCCc---c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCC-CCc--cCchhcCCC
Q 037304 141 ENVKRFTAHGNLND---F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSL-VLI--RYPFEIENL 213 (257)
Q Consensus 141 ~~~r~L~~~~~~~~---~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~--~lp~~i~~L 213 (257)
.++++|.+..+... . .....++ +|++|.+.++... ...+..+..+++|+.|++++| .++ .+|..+..+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccC----HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 56677777666533 1 2234566 8888887776532 344566777888888888888 466 366767778
Q ss_pred CCCcEEEccCC-Cccc--cchhHHhcCc-cccEeeccCCC
Q 037304 214 FLLRYLHLNIP-SLKS--LPSSLLNSLL-NLYTLDKPFSY 249 (257)
Q Consensus 214 ~~L~~L~l~~~-~l~~--lP~~i~~~L~-~L~~L~l~~~~ 249 (257)
++|++|++++| .++. +|..+ +.++ +|++|++++|.
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYR 206 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCG
T ss_pred CCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCc
Confidence 88888888888 7763 66667 7888 88888888873
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.40 E-value=2.2e-07 Score=80.87 Aligned_cols=112 Identities=15% Similarity=0.015 Sum_probs=82.6
Q ss_pred CcEEEEEEeCCCCc------c-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----Cc
Q 037304 141 ENVKRFTAHGNLND------F-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YP 207 (257)
Q Consensus 141 ~~~r~L~~~~~~~~------~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp 207 (257)
..++.|.+..+... . + ....++ +|+.|.+.++.........++..+..+++|+.|+|++|.+.. +|
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 46777888777655 1 2 455677 888888887765210013356678888999999999998873 46
Q ss_pred hhc--CCCCCCcEEEccCCCccc-----cchhHHhcCccccEeeccCCCCCcC
Q 037304 208 FEI--ENLFLLRYLHLNIPSLKS-----LPSSLLNSLLNLYTLDKPFSYIDHT 253 (257)
Q Consensus 208 ~~i--~~L~~L~~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~~l 253 (257)
..+ +.+++|++|++++|.+.. +|..++.++++|++|++++|.+...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 666 448899999999998886 8888856689999999999887643
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.35 E-value=1.1e-06 Score=78.30 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.9
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.+.+..+.... +.. .+ +|++|.+.++... . .| .+..+++|++|++++|.+..+|..+ .+|++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~-~L~~L~L~~n~l~----~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PP-LLEYLGVSNNQLE----K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CT-TCCEEECCSSCCS----S-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred CCCcEEECCCCccCcccCC--CC-CCCEEECcCCCCC----C-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence 456666665554332 111 14 7777777776553 2 23 4777888888888888877777543 477888
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++++|.++.+| ++ +++++|++|++++|.+..+|.
T Consensus 179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCC
T ss_pred ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCC
Confidence 88888777777 46 788888888888877766654
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.34 E-value=1.9e-06 Score=79.86 Aligned_cols=97 Identities=16% Similarity=-0.063 Sum_probs=71.2
Q ss_pred CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304 141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL 219 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 219 (257)
..++.|.+..+.... +. .++ +|++|.+.++... . ++. .+++|+.|++++|.++.+|. .+++|++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~-~L~~L~Ls~N~l~----~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPP-ELRTLEVSGNQLT----S-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCT-TCCEEEECSCCCS----C-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCCCCCC--cCC-CCCEEEcCCCcCC----c-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 567888887776553 32 456 8888888877653 1 222 67788888888888888776 56778888
Q ss_pred EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
++++|.++.+|.. +++|++|++++|.+..+|.
T Consensus 127 ~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 127 WIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp ECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred ECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC
Confidence 8888888888764 3678888888888777764
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.31 E-value=1.7e-06 Score=74.27 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=36.4
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCc-hhcCCCCCCcE-EEccCCCccccchhHHhcCccc
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYP-FEIENLFLLRY-LHLNIPSLKSLPSSLLNSLLNL 240 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp-~~i~~L~~L~~-L~l~~~~l~~lP~~i~~~L~~L 240 (257)
+++.|.+.++... .+.+..|.++++|+.|+|++|.+. .+| ..+.++++|+. +.+++|++..+|+..|..+++|
T Consensus 31 ~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 31 NAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 4444444444332 233334444445555555544432 232 22344444332 2333344444433322444444
Q ss_pred cEeeccCCCCCcCC
Q 037304 241 YTLDKPFSYIDHTV 254 (257)
Q Consensus 241 ~~L~l~~~~l~~lP 254 (257)
++|++++|++..+|
T Consensus 107 ~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 107 QYLLISNTGIKHLP 120 (350)
T ss_dssp CEEEEEEECCSSCC
T ss_pred ccccccccccccCC
Confidence 44544444444443
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.28 E-value=1.8e-06 Score=80.08 Aligned_cols=77 Identities=19% Similarity=0.059 Sum_probs=61.5
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L 243 (257)
+|++|.+.++... . ++ ..+++|+.|++++|.++.+|. .+++|++|++++|.++.+|.++ +++++|+.|
T Consensus 222 ~L~~L~Ls~N~L~----~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l-~~l~~L~~L 289 (622)
T 3g06_A 222 GLKELIVSGNRLT----S-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL-IHLSSETTV 289 (622)
T ss_dssp TCCEEECCSSCCS----C-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG-GGSCTTCEE
T ss_pred CCCEEEccCCccC----c-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH-hhccccCEE
Confidence 5666666665543 1 22 456788999999999888887 6788999999999999999998 999999999
Q ss_pred eccCCCCCc
Q 037304 244 DKPFSYIDH 252 (257)
Q Consensus 244 ~l~~~~l~~ 252 (257)
++++|.+..
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 999998653
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.27 E-value=3e-07 Score=78.22 Aligned_cols=85 Identities=16% Similarity=0.014 Sum_probs=48.4
Q ss_pred CCCCCccEEEeecC-CCCCCCcccchHhhccCc-ccceEEEeCCC--C--ccCchhcCCCCCCcEEEccCCC-cc-ccch
Q 037304 160 HFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFK-FLRVLDLGSLV--L--IRYPFEIENLFLLRYLHLNIPS-LK-SLPS 231 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~--l--~~lp~~i~~L~~L~~L~l~~~~-l~-~lP~ 231 (257)
.++ +|+.|.+.++ ... ....+..+..++ +|+.|++++|. + ..+|..++.+++|++|++++|. ++ ..|.
T Consensus 166 ~~~-~L~~L~l~~~~~l~---~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 166 SCS-RLDELNLSWCFDFT---EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HCT-TCCEEECCCCTTCC---HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred cCC-CCCEEcCCCCCCcC---hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 445 5666665555 321 112344556666 66666666663 3 2455555666666666666666 33 4555
Q ss_pred hHHhcCccccEeeccCCC
Q 037304 232 SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 232 ~i~~~L~~L~~L~l~~~~ 249 (257)
.+ +++++|++|++++|.
T Consensus 242 ~l-~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 242 EF-FQLNYLQHLSLSRCY 258 (336)
T ss_dssp GG-GGCTTCCEEECTTCT
T ss_pred HH-hCCCCCCEeeCCCCC
Confidence 56 666667777666663
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.24 E-value=9.1e-07 Score=76.92 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred cEEEEEEeCCCCcc---c----cccCCCCCccEEEeecCCCCCC-CcccchHhhccCcccceEEEeCCCC-----ccCch
Q 037304 142 NVKRFTAHGNLNDF---A----FLDHFDSFLHSLLHLTSGSHYL-NPTYCEKICKMFKFLRVLDLGSLVL-----IRYPF 208 (257)
Q Consensus 142 ~~r~L~~~~~~~~~---~----~~~~~~~~Lrsl~l~~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~l-----~~lp~ 208 (257)
.+++|.+..+.... + ....++ +|++|.+.++..... .....+..+..+++|++|+|++|.+ ..+|.
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 56677776665531 1 233566 788888777755200 0012333677788888888888887 45677
Q ss_pred hcCCCCCCcEEEccCCCccc-----cchhHHhc--CccccEeeccCCCCCc
Q 037304 209 EIENLFLLRYLHLNIPSLKS-----LPSSLLNS--LLNLYTLDKPFSYIDH 252 (257)
Q Consensus 209 ~i~~L~~L~~L~l~~~~l~~-----lP~~i~~~--L~~L~~L~l~~~~l~~ 252 (257)
.+..+++|++|++++|.+.. +|..+ .. +++|++|++++|.+..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHH-hhccCCCeEEEECcCCcCCH
Confidence 78888888888888887763 46665 44 7888888888887664
No 136
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.18 E-value=3.8e-06 Score=74.91 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=47.7
Q ss_pred hhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 186 ICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
.+.++++|+.|++++|.+..+|... .+|++|++++|.+..+|. + +.+++|++|++++|++..+|.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-L-QNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCSSCCSSCCS
T ss_pred cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-c-CCCCCCCEEECCCCcCCcccc
Confidence 3566667777777777766665432 467777777777778884 6 889999999999988887775
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.02 E-value=4e-06 Score=72.32 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=43.0
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccC-chh----cCCC-CCCcEEEccCCCccc-----cch
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRY-PFE----IENL-FLLRYLHLNIPSLKS-----LPS 231 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~l-p~~----i~~L-~~L~~L~l~~~~l~~-----lP~ 231 (257)
+|+.|.+.++..........+..+..++ +|+.|++++|.+... +.. +..+ ++|++|++++|.+.. +|.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 5666666555442111112233344443 566666666665432 222 2233 356666666665554 555
Q ss_pred hHHhcC-ccccEeeccCCCCCc
Q 037304 232 SLLNSL-LNLYTLDKPFSYIDH 252 (257)
Q Consensus 232 ~i~~~L-~~L~~L~l~~~~l~~ 252 (257)
.+ ..+ ++|++|++++|.+..
T Consensus 219 ~l-~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 219 IF-SSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HH-HHSCTTCCEEECCSSCCCC
T ss_pred HH-hcCCCCceEEECcCCCCCc
Confidence 55 443 356666666665543
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.94 E-value=8.3e-06 Score=70.30 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=65.7
Q ss_pred CcEEEEEEeCCCCccc-------cccCCCCCccEEEeecCCCCCCCcccchHhhccC-----cccceEEEeCCCCccC-c
Q 037304 141 ENVKRFTAHGNLNDFA-------FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMF-----KFLRVLDLGSLVLIRY-P 207 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~~-------~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~l~~l-p 207 (257)
..+++|.+..+..... ....++.+|+.|.+.++... ...+..+..+ ++|+.|+|++|.+... +
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC----HHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3467777777654321 11223225788888777653 2223333332 7888888888887744 3
Q ss_pred hh----cCCC-CCCcEEEccCCCccccchhHHh----c-CccccEeeccCCCCC
Q 037304 208 FE----IENL-FLLRYLHLNIPSLKSLPSSLLN----S-LLNLYTLDKPFSYID 251 (257)
Q Consensus 208 ~~----i~~L-~~L~~L~l~~~~l~~lP~~i~~----~-L~~L~~L~l~~~~l~ 251 (257)
.. +..+ ++|++|++++|.++..+...++ . ..+|++|++++|.+.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 33 3344 7888888888888766543213 3 258888888888765
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.91 E-value=6.1e-06 Score=73.08 Aligned_cols=107 Identities=15% Similarity=0.038 Sum_probs=63.4
Q ss_pred CcEEEEEEeCCCCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCc----ccceEEEeCCCCc-----
Q 037304 141 ENVKRFTAHGNLNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFK----FLRVLDLGSLVLI----- 204 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~l~----- 204 (257)
..++.|.+..+.... .....++ +|++|.+.++... .......+..++ +|+.|++++|.+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 456677777665441 1233456 7777777766542 111223334444 5777888777766
Q ss_pred cCchhcCCCCCCcEEEccCCCcccc-chhH----HhcCccccEeeccCCCCC
Q 037304 205 RYPFEIENLFLLRYLHLNIPSLKSL-PSSL----LNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 205 ~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i----~~~L~~L~~L~l~~~~l~ 251 (257)
.+|..+..+++|++|++++|.+... +..+ +..+.+|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 3567777777788888877776532 2222 122456788888777655
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.87 E-value=6.5e-06 Score=72.89 Aligned_cols=87 Identities=21% Similarity=0.088 Sum_probs=62.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCC-----CCCCcEEEccCCCcc-----ccchh
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIEN-----LFLLRYLHLNIPSLK-----SLPSS 232 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~-----L~~L~~L~l~~~~l~-----~lP~~ 232 (257)
+|+.|.+.++..........+..+..+++|+.|++++|.+... +..+.. .++|++|++++|.++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 5666666665543111122456677788999999999887633 333332 678999999999887 78888
Q ss_pred HHhcCccccEeeccCCCCC
Q 037304 233 LLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 233 i~~~L~~L~~L~l~~~~l~ 251 (257)
+ .++++|++|++++|.+.
T Consensus 394 l-~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 L-LANHSLRELDLSNNCLG 411 (461)
T ss_dssp H-HHCCCCCEEECCSSSCC
T ss_pred H-HhCCCccEEECCCCCCC
Confidence 8 88999999999998765
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.1e-05 Score=66.76 Aligned_cols=62 Identities=23% Similarity=0.105 Sum_probs=34.7
Q ss_pred ccCcccceEEEeCCCCccC---chhcCCCCCCcEEEccCCCccccchhHHhcCc--cccEeeccCCCCC
Q 037304 188 KMFKFLRVLDLGSLVLIRY---PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLL--NLYTLDKPFSYID 251 (257)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~--~L~~L~l~~~~l~ 251 (257)
.++++|+.|+|++|.+..+ |..++.+++|++|+|++|.++.+ ..+ ..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCc
Confidence 4456666666666665533 24445566666666666666554 223 4444 6666666666543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.84 E-value=7.4e-06 Score=71.15 Aligned_cols=109 Identities=11% Similarity=-0.083 Sum_probs=78.7
Q ss_pred CcEEEEEEeCCCCcc---cc----c-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCc
Q 037304 141 ENVKRFTAHGNLNDF---AF----L-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYP 207 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~----~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp 207 (257)
..+++|.+..+.... .. . ...+ .|++|.+.++.........+...+...++|+.|+|++|.+. .++
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 457788887776542 11 1 2356 89999998887531111234455678889999999999977 346
Q ss_pred hhcCCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304 208 FEIENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 208 ~~i~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
..+...++|+.|+|++|.+. .++..+ ...++|++|+|++|.+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L-~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAA-REHPSLELLHLYFNELS 252 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHH-HHCSSCCEEECTTSSCC
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHH-HhCCCCCEEeccCCCCC
Confidence 66777889999999999886 455666 77899999999999865
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=4.1e-05 Score=63.32 Aligned_cols=82 Identities=21% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCC--CCcEEEccCCCcc-ccch-----
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLF--LLRYLHLNIPSLK-SLPS----- 231 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~-~lP~----- 231 (257)
.++ +|++|.+.++.... ...++..+..+++|+.|+|++|.+..+ ..+..+. +|+.|+|++|.+. .+|.
T Consensus 168 ~l~-~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCT-TCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCC-CCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 577 99999999998752 123456778999999999999999876 3355555 9999999999986 4552
Q ss_pred -hHHhcCccccEeec
Q 037304 232 -SLLNSLLNLYTLDK 245 (257)
Q Consensus 232 -~i~~~L~~L~~L~l 245 (257)
.++..+++|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23388999999973
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=5.9e-05 Score=64.04 Aligned_cols=88 Identities=19% Similarity=0.001 Sum_probs=70.5
Q ss_pred CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc-EEEccCCCccccchhHHhcCc
Q 037304 161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR-YLHLNIPSLKSLPSSLLNSLL 238 (257)
Q Consensus 161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~-~L~l~~~~l~~lP~~i~~~L~ 238 (257)
++ +|+++.+.++.. ..+.+..|.++.+|+.|+|.++ +..++ ..+.++.+|+ .+.+.. .++.+++..|..+.
T Consensus 225 ~~-~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MP-NLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp CT-TCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred cC-CCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 56 888888876543 3566778999999999999887 77675 5678889998 999988 78888876668899
Q ss_pred cccEeeccCCCCCcCCC
Q 037304 239 NLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 239 ~L~~L~l~~~~l~~lP~ 255 (257)
+|+.+++.++.+..+++
T Consensus 298 ~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGD 314 (329)
T ss_dssp TEEEEEECSSCCCEECT
T ss_pred cCCEEEeCCCccCccch
Confidence 99999998888877765
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.64 E-value=2e-05 Score=68.49 Aligned_cols=109 Identities=13% Similarity=-0.052 Sum_probs=77.7
Q ss_pred CcEEEEEEeCCCCcc---cc-ccCCCCCccEEEeecCCCCCCCcccchHhh-ccCcccceEEEeCCCCcc-----Cchhc
Q 037304 141 ENVKRFTAHGNLNDF---AF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKIC-KMFKFLRVLDLGSLVLIR-----YPFEI 210 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~l~~-----lp~~i 210 (257)
..++.|.+..+.... .. ...+. +++.|.+.++.........+...+ ...+.|+.|+|++|.+.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 367778887776542 11 12345 889999988876310011122223 346889999999999863 56667
Q ss_pred CCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304 211 ENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 211 ~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
..+++|++|+|++|.+. .++..+ ...++|++|+|++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCC
Confidence 88899999999999886 356677 88899999999999875
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=3.2e-05 Score=60.30 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=77.7
Q ss_pred CcEEEEEEeCC-CCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----Cc
Q 037304 141 ENVKRFTAHGN-LNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YP 207 (257)
Q Consensus 141 ~~~r~L~~~~~-~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp 207 (257)
..++.|.+..+ .... ......+ .|++|.+.++.....-...+...+...+.|+.|+|++|.+.. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 45667777766 4431 2234456 899999988876421112344566777889999999999873 56
Q ss_pred hhcCCCCCCcEEEc--cCCCcc-----ccchhHHhcCccccEeeccCCCC
Q 037304 208 FEIENLFLLRYLHL--NIPSLK-----SLPSSLLNSLLNLYTLDKPFSYI 250 (257)
Q Consensus 208 ~~i~~L~~L~~L~l--~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l 250 (257)
..+...++|++|+| ++|.+. .+...+ ...++|++|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCC
Confidence 77777889999999 778876 366666 7778999999999875
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=3.4e-05 Score=60.14 Aligned_cols=92 Identities=11% Similarity=-0.001 Sum_probs=68.4
Q ss_pred ccCCCCCccEEEeecC-CCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc---
Q 037304 158 LDHFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS--- 228 (257)
Q Consensus 158 ~~~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~--- 228 (257)
....+ .|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.+..
T Consensus 32 l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 34556 8999999887 5531111234456777889999999999986 245556666889999999998863
Q ss_pred --cchhHHhcCccccEeec--cCCCCC
Q 037304 229 --LPSSLLNSLLNLYTLDK--PFSYID 251 (257)
Q Consensus 229 --lP~~i~~~L~~L~~L~l--~~~~l~ 251 (257)
+...+ ...++|++|++ ++|.+.
T Consensus 111 ~~l~~~L-~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEAL-QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHH-HhCCCceEEEecCCCCCCC
Confidence 67777 88889999999 778764
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.56 E-value=9e-05 Score=67.64 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=50.8
Q ss_pred hhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCcc--ccchhHHhcCccccEeeccCCCCC
Q 037304 186 ICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLK--SLPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
....+++|+.|++++|.++ .++..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|++.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEEEEESCBCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCeeECcCCcCC
Confidence 3345788888888888876 35666788899999999999875 355556 78999999999999854
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.44 E-value=0.00023 Score=54.92 Aligned_cols=83 Identities=8% Similarity=-0.050 Sum_probs=56.1
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Ccc-CchhcCCC----CCCcEEEccCCC-cccc-chhHHh
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIR-YPFEIENL----FLLRYLHLNIPS-LKSL-PSSLLN 235 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~-lp~~i~~L----~~L~~L~l~~~~-l~~l-P~~i~~ 235 (257)
+|+.|.+.++... ... + ..+.++++|+.|+|++|. ++. --..++.+ ++|++|++++|. ++.- -..+ .
T Consensus 62 ~L~~LDLs~~~It--d~G-L-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIM--SIG-F-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCCCC--GGG-G-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCCcc--HHH-H-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 6888888877653 111 1 345788889999999886 662 23445554 368899998875 6521 1345 7
Q ss_pred cCccccEeeccCCC-CC
Q 037304 236 SLLNLYTLDKPFSY-ID 251 (257)
Q Consensus 236 ~L~~L~~L~l~~~~-l~ 251 (257)
++++|++|++++|. ++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 78889999998885 43
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00019 Score=52.57 Aligned_cols=53 Identities=26% Similarity=0.232 Sum_probs=31.4
Q ss_pred eEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304 195 VLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 195 ~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
+++-++.+++ .+|..+. .+|++|+|++|.|+.||...|..+.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5664433 246666666666666666555566666666666653
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.32 E-value=0.00022 Score=65.07 Aligned_cols=22 Identities=14% Similarity=0.239 Sum_probs=12.8
Q ss_pred cccchhHHhcCccccEeeccCCC
Q 037304 227 KSLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 227 ~~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
..+|..+ ..+++|++|++++|.
T Consensus 283 ~~l~~~~-~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 283 NEMPILF-PFAAQIRKLDLLYAL 304 (592)
T ss_dssp TTGGGGG-GGGGGCCEEEETTCC
T ss_pred hHHHHHH-hhcCCCcEEecCCCc
Confidence 3455555 556666666666655
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.31 E-value=0.00027 Score=61.01 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=65.9
Q ss_pred CcEEEEEEeCCCCcc---c--cccCCCCCccEEEeecCCC---CCCCcccchHhh--ccCcccceEEEeCCCCcc-Cchh
Q 037304 141 ENVKRFTAHGNLNDF---A--FLDHFDSFLHSLLHLTSGS---HYLNPTYCEKIC--KMFKFLRVLDLGSLVLIR-YPFE 209 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~--~~~~~~~~Lrsl~l~~~~~---~~~~~~~~~~~~--~~l~~Lr~L~L~~~~l~~-lp~~ 209 (257)
.++++|.+..+.... . ....++ +|+.|.+..... .......+...+ ..+++|++|+|.+|.+.. .+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 566677766554332 1 112567 788877642111 000011112223 247889999998888652 2222
Q ss_pred c---CCCCCCcEEEccCCCccc-----cchhHHhcCccccEeeccCCCCC
Q 037304 210 I---ENLFLLRYLHLNIPSLKS-----LPSSLLNSLLNLYTLDKPFSYID 251 (257)
Q Consensus 210 i---~~L~~L~~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~ 251 (257)
+ +.+++|+.|+|+.|.+.. ++..+ .++++|+.|++++|.+.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCC
Confidence 2 357889999998888764 66677 77889999999888754
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.06 E-value=0.00029 Score=64.17 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=60.3
Q ss_pred CcEEEEEEeCCCCcc---cccc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----CchhcC
Q 037304 141 ENVKRFTAHGNLNDF---AFLD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YPFEIE 211 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~ 211 (257)
..+++|.+..+.... .... .++ +|++|.+.++... .....+..+.++++|++|++++|.+.. ++....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 456677777655332 1121 466 7888887766321 111244555677888888888776442 233333
Q ss_pred CCCCCcEEEccCCC--c--cccchhHHhcCccccEeeccCC
Q 037304 212 NLFLLRYLHLNIPS--L--KSLPSSLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 212 ~L~~L~~L~l~~~~--l--~~lP~~i~~~L~~L~~L~l~~~ 248 (257)
.+++|+.|++++|. + ..++.-+ .++++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCC
Confidence 56677777777765 2 1233333 55677777777776
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.0012 Score=55.73 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=77.3
Q ss_pred CcEEEEEEeCCCCc-c--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccc-eEEEeCCCCccCc-hhcCCCCC
Q 037304 141 ENVKRFTAHGNLND-F--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLR-VLDLGSLVLIRYP-FEIENLFL 215 (257)
Q Consensus 141 ~~~r~L~~~~~~~~-~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~L~~~~l~~lp-~~i~~L~~ 215 (257)
..++.+.+..+... + ....++. +|+++.+..+ ...+.+..|.++++|+ .+++.+ .++.++ ..+.++++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred CCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 35566666654333 2 2456777 8999988775 2356778999999999 999998 777774 78899999
Q ss_pred CcEEEccCCCccccchhHHhcCccccEeec
Q 037304 216 LRYLHLNIPSLKSLPSSLLNSLLNLYTLDK 245 (257)
Q Consensus 216 L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l 245 (257)
|+.++++++.++.++...|.++.+|+.+..
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999999977789999998853
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.92 E-value=0.00043 Score=63.06 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Ccc--CchhcCCCCCCcEEEccCCCccc-----cch
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIR--YPFEIENLFLLRYLHLNIPSLKS-----LPS 231 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~--lp~~i~~L~~L~~L~l~~~~l~~-----lP~ 231 (257)
.++ +|+.|.+.++... ...+......+++|+.|++++|. +.. ++..+.++++|++|++++|.++. ++.
T Consensus 103 ~~~-~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 103 SYT-WLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HCT-TCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred hCC-CCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 567 8999999887642 22233333478999999999994 553 56656689999999999987653 333
Q ss_pred hHHhcCccccEeeccCCC
Q 037304 232 SLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 232 ~i~~~L~~L~~L~l~~~~ 249 (257)
-. ..+++|++|++++|.
T Consensus 179 ~~-~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 179 FP-DTYTSLVSLNISCLA 195 (594)
T ss_dssp SC-TTCCCCCEEECTTCC
T ss_pred Hh-hcCCcCcEEEecccC
Confidence 33 467799999999885
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.66 E-value=0.0073 Score=52.02 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=67.9
Q ss_pred CcEEEEEEeCCC-CccccccCCCCCccEEEeecCCCCCCCcccchHhh--ccCcccceEEEeCC--C------CccCchh
Q 037304 141 ENVKRFTAHGNL-NDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC--KMFKFLRVLDLGSL--V------LIRYPFE 209 (257)
Q Consensus 141 ~~~r~L~~~~~~-~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~--~------l~~lp~~ 209 (257)
+.++.|.+.++. ...+. ...+ +|+.|.+..+... .... ..+ ..+++|+.|+|+.+ . +..+...
T Consensus 172 P~L~~L~L~g~~~l~l~~-~~~~-~L~~L~L~~~~l~---~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-KPRP-NLKSLEIISGGLP---DSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-CBCT-TCSEEEEECSBCC---HHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCcEEEEeCCCCceecc-ccCC-CCcEEEEecCCCC---hHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 678888887763 22233 3467 8999998766542 1111 222 37899999998632 1 2222222
Q ss_pred c--CCCCCCcEEEccCCCcc-ccchhHH--hcCccccEeeccCCCCCc
Q 037304 210 I--ENLFLLRYLHLNIPSLK-SLPSSLL--NSLLNLYTLDKPFSYIDH 252 (257)
Q Consensus 210 i--~~L~~L~~L~l~~~~l~-~lP~~i~--~~L~~L~~L~l~~~~l~~ 252 (257)
+ ..+++|++|+|++|.+. ..+..++ +.+++|++|+|+.|.+..
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 35789999999999875 3344441 257899999999987653
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.52 E-value=0.0093 Score=52.04 Aligned_cols=110 Identities=5% Similarity=-0.064 Sum_probs=67.1
Q ss_pred cEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCC-CCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc
Q 037304 142 NVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSH-YLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR 217 (257)
Q Consensus 142 ~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~ 217 (257)
.++.+.+..+-..+ ....++. +|+++.+.++... .....+.+..|.++++|+.+++.. .++.++ ..+.++.+|+
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeCCCccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 34455554433332 2344566 7777776654431 011235556777777788877773 466554 4566778888
Q ss_pred EEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304 218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255 (257)
Q Consensus 218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 255 (257)
.+.+.. +++.++...|.++ +|+.+++.+|.+..++.
T Consensus 327 ~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 327 QLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp EEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred EEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 888844 3777766655777 88888888776555543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.16 E-value=0.019 Score=44.17 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=60.4
Q ss_pred CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccC----cccceEEEeCCC-CccC-chhcC
Q 037304 141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMF----KFLRVLDLGSLV-LIRY-PFEIE 211 (257)
Q Consensus 141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l----~~Lr~L~L~~~~-l~~l-p~~i~ 211 (257)
..+.+|.+.+..... ....+++ +|+.|.+.++..- ....-..+..+ ++|+.|++++|. ++.- -..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~I---tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYI---EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTC---CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCcc---CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 568899988876443 4456888 9999999998642 12222344443 479999999997 7732 35577
Q ss_pred CCCCCcEEEccCCC-ccc
Q 037304 212 NLFLLRYLHLNIPS-LKS 228 (257)
Q Consensus 212 ~L~~L~~L~l~~~~-l~~ 228 (257)
.+++|++|++++|. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 89999999999985 653
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.16 E-value=0.044 Score=47.71 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=60.3
Q ss_pred CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cC-chhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304 164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSL 237 (257)
Q Consensus 164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L 237 (257)
+|+++.+... ...+....|.++++|+.+++.++.+. .+ +..+..+++|+.+.+. ++++.++...|..+
T Consensus 249 ~L~~i~lp~~-----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 249 GITTVKLPNG-----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN 322 (401)
T ss_dssp CCSEEEEETT-----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred CccEEEeCCC-----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence 4555555322 22455678889999999999887754 34 4667888999999998 45888888776888
Q ss_pred ccccEeeccCCCCCcCC
Q 037304 238 LNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 238 ~~L~~L~l~~~~l~~lP 254 (257)
.+|+.+.+..+ +..++
T Consensus 323 ~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp CSCCEEEECTT-CCEEC
T ss_pred CCccEEEECcc-ccEEc
Confidence 99999998654 44443
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.034 Score=40.32 Aligned_cols=35 Identities=26% Similarity=0.129 Sum_probs=27.3
Q ss_pred ccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCc
Q 037304 192 FLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSL 226 (257)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l 226 (257)
+|+.|+|++|.|+.+|. .+..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 57888888888888864 456788888888888755
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.21 E-value=0.24 Score=42.17 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=47.0
Q ss_pred cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccC
Q 037304 182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF 247 (257)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~ 247 (257)
+....|.++.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+|+.+.+..
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 44567788888888888877777664 56777888888888643 7777766557777887777643
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.39 E-value=0.47 Score=40.73 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=48.8
Q ss_pred ccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCC
Q 037304 181 TYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 181 ~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~ 248 (257)
.+....|.++.+|+.+++..+ ++.+. ..+.++.+|+.+.+.. .++.++...|.++.+|+.+++.++
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 455567888888888888653 55553 5677788899888864 377887766688889998888765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.14 E-value=0.087 Score=41.17 Aligned_cols=89 Identities=11% Similarity=0.008 Sum_probs=56.6
Q ss_pred cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCC---Ccc---
Q 037304 159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIP---SLK--- 227 (257)
Q Consensus 159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~---~l~--- 227 (257)
..-. .|+.|.+.++.....-...+...+..-+.|+.|+|++|.|. .+-+.+..=+.|+.|+|+++ .+.
T Consensus 67 ~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 67 CNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp TTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred hhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3344 78888888776642112334566667778888888888876 23344555566888888754 232
Q ss_pred --ccchhHHhcCccccEeeccCCC
Q 037304 228 --SLPSSLLNSLLNLYTLDKPFSY 249 (257)
Q Consensus 228 --~lP~~i~~~L~~L~~L~l~~~~ 249 (257)
.+-+.+ ..-+.|+.|+++.+.
T Consensus 146 ~~~ia~aL-~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAI-EENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHH-HHCSSCCEEECCCCC
T ss_pred HHHHHHHH-HhCCCcCeEeccCCC
Confidence 344455 556778888887654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.08 E-value=0.27 Score=38.33 Aligned_cols=87 Identities=13% Similarity=-0.078 Sum_probs=59.9
Q ss_pred CCCCCccEEEeecC-CCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----c
Q 037304 160 HFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----S 228 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~ 228 (257)
.-+ .|+.|.+.++ .....-...+...+..-+.|+.|+|++|.+. .+-+.+..=+.|+.|+|++|.|. .
T Consensus 39 ~n~-~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCC-CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 345 7889988764 4321011234456777788999999999987 23344444578999999999886 4
Q ss_pred cchhHHhcCccccEeeccCC
Q 037304 229 LPSSLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 229 lP~~i~~~L~~L~~L~l~~~ 248 (257)
|-+.+ ..-..|+.|+|++|
T Consensus 118 la~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHT-TTTCCCSEEECCCC
T ss_pred HHHHH-hhCCceeEEECCCC
Confidence 55555 55677999999865
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.06 E-value=0.27 Score=42.31 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=46.6
Q ss_pred cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCC
Q 037304 182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFS 248 (257)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~ 248 (257)
+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+|+.++++.+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44566778888888887543 55553 56777888888888665 77777766578888888887654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.98 E-value=0.64 Score=39.50 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=50.0
Q ss_pred cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccC
Q 037304 182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF 247 (257)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~ 247 (257)
+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++.++.+++..|.++.+|+.+.+..
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 34456777778888887543 55554 4567889999999998889999887768889999998854
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.68 E-value=2.4 Score=36.23 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=58.7
Q ss_pred CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCc
Q 037304 160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLL 238 (257)
Q Consensus 160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~ 238 (257)
++. .|+++.+.... ..+....|.++..|+.+.+. +.+..++ ..+.++.+|+.+.+..+ ++.+....|..+.
T Consensus 263 ~c~-~L~~i~lp~~~-----~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 263 SCA-YLASVKMPDSV-----VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TCS-SCCEEECCTTC-----CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ecc-cccEEeccccc-----ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 445 56666554332 23445677888888888885 3456665 45777899999999753 7788776668889
Q ss_pred cccEeeccCCCCCcCC
Q 037304 239 NLYTLDKPFSYIDHTV 254 (257)
Q Consensus 239 ~L~~L~l~~~~l~~lP 254 (257)
+|+.+.+..+ +..++
T Consensus 335 ~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIP 349 (394)
T ss_dssp TCCEEEECTT-CCBCC
T ss_pred CCCEEEECcc-cCEEh
Confidence 9999998654 44443
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.64 E-value=3 Score=35.57 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=50.0
Q ss_pred chHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304 183 CEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV 254 (257)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 254 (257)
....|..+.+|+.+.+..+ ++.++ ..+.++.+|+.+.+.. .++.++...|.++.+|+.+++..+ +..++
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 3456777888888888654 55553 5577889999999864 488887766588999999998765 44443
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.00 E-value=14 Score=31.19 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=43.0
Q ss_pred HhHhhhhHHHHHHHHHhhcCC--CCceecHHHHHHHHH--H---cCCCCCCcHHHHHHHHHHHHHCCCcccee
Q 037304 33 VAYCMLLFYLKLCCLYLSVFP--VHFEISTKQLYQLWI--A---EGFIPNNNEATAERYLEQLINAGFVDAGK 98 (257)
Q Consensus 33 lSY~~L~~~lk~cfl~~a~Fp--~~~~i~~~~Li~~Wi--a---eg~i~~~~~~~~~~~~~~L~~r~li~~~~ 98 (257)
-++..||.+.+.++..+|.+. .+..++..++...+. + .|. ..........++++|++.++|....
T Consensus 301 ~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 301 HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 345789999999999888754 233566666655442 2 122 1112455678899999999998754
No 170
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=36.73 E-value=44 Score=23.02 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 59 STKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 59 ~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
.-.+||.|.+..+.+.. .+.|..+-+.|++.++|+++.+
T Consensus 39 ~GselVdWLi~~~~~~~--R~EAv~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 39 TGSGVIDWLVSNKLVRN--RQEGLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp CHHHHHHHHHHHTSSSS--HHHHHHHHHHHHHHTSSEECSS
T ss_pred cchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCcc
Confidence 45689999999887765 5678888899999999999864
No 171
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=36.10 E-value=12 Score=20.61 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=7.4
Q ss_pred hcCCCCcee
Q 037304 50 SVFPVHFEI 58 (257)
Q Consensus 50 a~Fp~~~~i 58 (257)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 788988876
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=33.11 E-value=1.7e+02 Score=24.02 Aligned_cols=88 Identities=18% Similarity=0.083 Sum_probs=50.6
Q ss_pred HhhhhHHHHHHHHHhhcCC---CCceecHHHHHHHHHH----cCCCCCCcHHHHHHHHHHHHHCCCccceec----CCCC
Q 037304 35 YCMLLFYLKLCCLYLSVFP---VHFEISTKQLYQLWIA----EGFIPNNNEATAERYLEQLINAGFVDAGKR----SDRG 103 (257)
Q Consensus 35 Y~~L~~~lk~cfl~~a~Fp---~~~~i~~~~Li~~Wia----eg~i~~~~~~~~~~~~~~L~~r~li~~~~~----~~~g 103 (257)
+..|+.+.|.++..++.+. .+..+....+...+.. .|..+ ........++++|.++++|..... +..|
T Consensus 283 l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g 361 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP-RVHSQLWSYLNDLREKGIVETRQNKRGEGVRG 361 (389)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHTTSSEEEEC--------
T ss_pred HHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCC
Confidence 5678888887777777654 2225666666665543 34222 124556788999999999988654 2234
Q ss_pred CeeEEEe----ChhHHHHHHHhhc
Q 037304 104 RINTGFI----PGRCSPALLTVAF 123 (257)
Q Consensus 104 ~~~~~~m----Hdl~~dl~~~i~~ 123 (257)
+...++. ||++..+...+..
T Consensus 362 ~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 362 RTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp -CEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceeEEEeCCCHHHHHHHHHHHHHH
Confidence 3333433 3555555544433
No 173
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=30.67 E-value=67 Score=22.77 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=31.6
Q ss_pred ecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccee
Q 037304 58 ISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGK 98 (257)
Q Consensus 58 i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~ 98 (257)
+.-.++|.|.+..+.+.. .+.|..+=+.|++.++|+++.
T Consensus 48 F~GsdlVdWLl~~~~~~s--R~EAv~lg~~Ll~~G~i~hV~ 86 (127)
T 2cso_A 48 FTGNCVIDWLVSNQSVRN--RQEGLMIASSLLNEGYLQPAG 86 (127)
T ss_dssp EEHHHHHHHHHHTTSCSS--HHHHHHHHHHHHHHTSSEEES
T ss_pred eechHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCc
Confidence 445689998888886655 567888889999999999984
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.14 E-value=9.2 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=15.3
Q ss_pred HHHcCCCCCCc-----HHHHHHHHH-HHHHCCCccc
Q 037304 67 WIAEGFIPNNN-----EATAERYLE-QLINAGFVDA 96 (257)
Q Consensus 67 Wiaeg~i~~~~-----~~~~~~~~~-~L~~r~li~~ 96 (257)
-+..|++.... .+.|..|++ ++.+|+|||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 44567764332 677777776 7777777774
No 175
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=20.52 E-value=1.9e+02 Score=19.84 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=30.2
Q ss_pred CCceecHHHHHHHHHHcC--CCCCCc-----HHHHHHHHHHHHH-CCCccce
Q 037304 54 VHFEISTKQLYQLWIAEG--FIPNNN-----EATAERYLEQLIN-AGFVDAG 97 (257)
Q Consensus 54 ~~~~i~~~~Li~~Wiaeg--~i~~~~-----~~~~~~~~~~L~~-r~li~~~ 97 (257)
.+-.+.+.+||.|++.+- =+.+.. ...++.++..|+. -+.+...
T Consensus 32 ~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D~iLi~v 83 (114)
T 2klq_A 32 DESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDHVLIEL 83 (114)
T ss_dssp SSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred ccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhCCEEEEE
Confidence 456799999999999882 222222 4557788999998 5555443
No 176
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=1.9e+02 Score=19.49 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=31.5
Q ss_pred ecHHHHHHHHHHc-------CCCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 58 ISTKQLYQLWIAE-------GFIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 58 i~~~~Li~~Wiae-------g~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
+.-.++|.+.+.. |.+.. .+.|-.+-+.|++.++|+.+..
T Consensus 41 F~GsE~VdWL~~~l~~~~~fg~~~s--R~eAv~lgq~Ll~~gvi~hV~~ 87 (105)
T 2ysr_A 41 FTAGEAVDWLYDLLRNNSNFGPEVT--RQQTIQLLRKFLKNHVIEDIKG 87 (105)
T ss_dssp EEHHHHHHHHHHHHHHSSSSTTTCC--HHHHHHHHHHHHHTTSSEESSC
T ss_pred ccchHHHHHHHHhcccccccCccCC--HHHHHHHHHHHHHCCCeEeccC
Confidence 3456888888887 66544 6778889999999999998864
No 177
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=20.17 E-value=1.8e+02 Score=19.61 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=30.8
Q ss_pred ecHHHHHHHHHHcC-CCCCCcHHHHHHHHHHHHHCCCccceec
Q 037304 58 ISTKQLYQLWIAEG-FIPNNNEATAERYLEQLINAGFVDAGKR 99 (257)
Q Consensus 58 i~~~~Li~~Wiaeg-~i~~~~~~~~~~~~~~L~~r~li~~~~~ 99 (257)
+.-.++|.|.+..+ .+.. .+.|..+-+.|++.++|+.+..
T Consensus 51 F~G~dlVdWL~~~~~~~~~--r~eAv~lg~~Ll~~G~I~hv~~ 91 (105)
T 1fsh_A 51 VIGADVVDWLYTHVEGFKE--RREARKYASSMLKHGFLRHTVN 91 (105)
T ss_dssp CHHHHHHHHHHHHCCCCSS--HHHHHHHHHHHHHTTTEECSSS
T ss_pred eEcHHHHHHHHHhCcCCCC--HHHHHHHHHHHHHCCcEEEcCC
Confidence 34568899888875 3433 5678899999999999998754
Done!