BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037308
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGN--INW 180
P + +L L L +R S L +L I +L L +LDL GC+ L+ I G +
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 181 LFLRETA-IEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQRL 239
L L++ + + LP I RL +L LDL GC NL RL
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLR------------------------GCVNLSRL 293
Query: 240 PECLGQLSSPIIL 252
P + QL + I+
Sbjct: 294 PSLIAQLPANCII 306
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSA-EKLV 83
T++P+ S+ +GE++ V+ LQ R W G ++SLP++++ + L
Sbjct: 163 LTELPE----PLASTDASGEHQGLVN-LQSLRL------EWTG--IRSLPASIANLQNLK 209
Query: 84 FLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL 143
LK+ S + L H L ++ C L P L +L+ L+ +L
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI---LKDCSNL 266
Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRL 170
+LP I L L KLDL GC L RL
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRL 293
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 139 GSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG---NINWLFLRETAIEELPSS 194
GS L +LP G+F+ L LT LDL G ++L L ++ LF+ + ELP
Sbjct: 72 GSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 195 IERLLRLGHLDL 206
IERL L HL L
Sbjct: 131 IERLTHLTHLAL 142
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 118 AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG 176
+T PT +P + L+L + SLKSLP+G+F+ L LT+L L G +L + +G
Sbjct: 18 GRTSVPTGIPA--QTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGG----NKLQSLPNG 70
Query: 177 NIN------WLFLRETAIEELPSSI-ERLLRLGHLDLS 207
N +L L ++ LP+ + ++L +L L L+
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 81 KLVFLKVPYSDIEQLWNGEKHYSNLNQIIN-ATCNKLIAKTPNPTLMPHLNKLVILNLRG 139
KL +L + Y+ ++ L G + +L ++ N +A P + HL +L L L G
Sbjct: 60 KLTWLNLDYNQLQTLSAGV--FDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGG 116
Query: 140 SKSLKSLPSGIFNLEFLTKL 159
++ LKSLPSG+F + LTKL
Sbjct: 117 NQ-LKSLPSGVF--DRLTKL 133
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 81 KLVFLKVPYSDIEQLWNGEKHYSNLNQIIN-ATCNKLIAKTPNPTLMPHLNKLVILNLRG 139
KL +L + Y+ ++ L G + +L ++ N +A P + HL +L L L G
Sbjct: 60 KLTWLNLDYNQLQTLSAGV--FDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGG 116
Query: 140 SKSLKSLPSGIFNLEFLTKL 159
++ LKSLPSG+F + LTKL
Sbjct: 117 NQ-LKSLPSGVF--DRLTKL 133
>pdb|3BAN|A Chain A, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BAN|B Chain B, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BDK|A Chain A, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3BDK|B Chain B, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3DBN|A Chain A, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3DBN|B Chain B, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3FVM|A Chain A, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
pdb|3FVM|B Chain B, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
Length = 386
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 32 RFLKFYSSSFNGENKCKVSYLQDPR 56
RFL Y S NG C SY DP+
Sbjct: 242 RFLNLYDSEHNGITMCVGSYASDPK 266
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 228 LNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIP 263
LNL +NL+ LP + S P+IL++++T + +P
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 228 LNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIP 263
LNL +NL+ LP + S P+IL++++T + +P
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
>pdb|2QZV|A Chain A, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
pdb|2QZV|B Chain B, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
Length = 873
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 190 ELPSSIERLLRLGHLDLSD 208
ELPS +E LL LGH L+D
Sbjct: 430 ELPSGVEELLNLGHDPLAD 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,521,341
Number of Sequences: 62578
Number of extensions: 316363
Number of successful extensions: 757
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 41
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)