Query 037308
Match_columns 321
No_of_seqs 126 out of 2489
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.2E-27 7E-32 239.0 17.6 266 4-280 70-342 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-26 3.1E-31 234.3 17.7 261 10-280 98-366 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.5E-25 3.2E-30 228.4 22.9 296 1-301 530-904 (1153)
4 KOG4194 Membrane glycoprotein 99.9 2.6E-26 5.6E-31 205.9 5.4 283 9-299 129-448 (873)
5 KOG4194 Membrane glycoprotein 99.9 5.5E-26 1.2E-30 203.8 2.0 282 4-299 103-425 (873)
6 KOG0444 Cytoskeletal regulator 99.9 6.6E-24 1.4E-28 192.2 -3.3 242 52-299 96-371 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 1.2E-22 2.6E-27 184.1 1.1 251 27-287 5-261 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.6E-22 3.5E-27 174.5 -4.4 86 195-281 431-539 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 3.4E-21 7.4E-26 166.4 -7.8 247 23-286 62-312 (565)
10 PRK15387 E3 ubiquitin-protein 99.8 1.6E-17 3.4E-22 159.9 14.7 219 29-282 222-457 (788)
11 PLN03210 Resistant to P. syrin 99.7 4.1E-17 8.9E-22 166.9 17.9 237 55-299 554-855 (1153)
12 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.4E-22 161.6 10.9 227 29-287 178-404 (754)
13 PRK15370 E3 ubiquitin-protein 99.7 2.2E-17 4.9E-22 159.5 11.1 225 29-282 199-427 (754)
14 PRK15387 E3 ubiquitin-protein 99.7 8.6E-17 1.9E-21 154.9 14.3 227 29-296 201-428 (788)
15 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.8E-23 164.1 -2.1 217 58-283 241-489 (1081)
16 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.1E-23 133.5 -3.2 173 70-269 23-195 (264)
17 KOG0618 Serine/threonine phosp 99.7 9.5E-19 2.1E-23 165.0 -6.0 258 25-301 195-487 (1081)
18 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.1E-22 128.6 -3.9 172 97-299 27-199 (264)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-16 2.6E-21 142.0 -1.0 235 23-284 17-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.5 4.9E-15 1.1E-19 131.7 2.0 227 58-305 23-293 (319)
21 KOG4237 Extracellular matrix p 99.5 2.7E-16 5.9E-21 135.9 -6.2 260 12-281 74-357 (498)
22 KOG4237 Extracellular matrix p 99.4 8E-15 1.7E-19 127.0 -1.5 253 58-316 67-370 (498)
23 KOG1909 Ran GTPase-activating 99.3 1.9E-13 4.1E-18 116.8 0.3 254 5-283 6-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.3E-18 124.2 -1.6 209 63-281 55-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.3E-18 124.2 -4.3 193 83-285 53-248 (722)
26 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 4E-15 105.5 5.9 189 63-260 98-290 (394)
27 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.3E-15 104.7 6.4 176 58-240 116-294 (394)
28 KOG3207 Beta-tubulin folding c 99.1 2.8E-11 6E-16 106.5 0.1 182 23-212 140-339 (505)
29 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 98.2 2.0 102 175-280 306-409 (490)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.1E-15 91.5 3.6 36 195-230 109-147 (175)
31 PLN03150 hypothetical protein; 99.0 1.5E-09 3.3E-14 104.6 9.1 110 178-287 420-532 (623)
32 PF14580 LRR_9: Leucine-rich r 99.0 7E-10 1.5E-14 88.8 4.7 126 150-278 15-148 (175)
33 KOG3207 Beta-tubulin folding c 98.9 1E-10 2.2E-15 103.0 -0.7 86 175-260 196-284 (505)
34 KOG1259 Nischarin, modulator o 98.9 1.2E-10 2.7E-15 98.1 -0.4 200 58-264 214-416 (490)
35 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.4E-15 100.1 -3.3 177 125-302 87-310 (382)
36 PLN03150 hypothetical protein; 98.7 2.7E-08 5.8E-13 96.1 7.8 105 132-258 420-526 (623)
37 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.7E-13 67.1 3.5 57 177-233 2-59 (61)
38 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 99.8 -1.3 214 28-259 71-289 (414)
39 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.4E-13 66.1 4.1 61 199-259 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.5E-14 100.8 -3.1 211 58-280 72-287 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.8E-08 4E-13 99.7 4.5 126 28-164 522-652 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.5E-13 101.2 3.1 80 58-140 571-652 (889)
43 PRK15386 type III secretion pr 98.5 7.2E-07 1.6E-11 80.2 9.5 70 129-208 51-121 (426)
44 KOG2120 SCF ubiquitin ligase, 98.4 4.7E-09 1E-13 88.6 -5.9 82 82-166 187-272 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.3 7.7E-08 1.7E-12 80.4 -0.3 254 5-286 6-318 (388)
46 PRK15386 type III secretion pr 98.3 1.7E-06 3.7E-11 77.8 7.8 129 151-299 49-186 (426)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.8E-08 3.9E-13 85.1 -5.6 173 131-303 186-376 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 2.2E-08 4.9E-13 93.7 -6.9 120 109-235 169-291 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.5E-11 52.1 3.7 40 247-287 1-40 (44)
50 KOG3665 ZYG-1-like serine/thre 98.1 8.9E-07 1.9E-11 85.8 2.0 151 129-280 121-285 (699)
51 KOG1859 Leucine-rich repeat pr 98.1 6.1E-08 1.3E-12 90.9 -6.0 121 83-210 167-290 (1096)
52 KOG4579 Leucine-rich repeat (L 97.9 9.8E-07 2.1E-11 66.4 -1.9 86 200-287 54-139 (177)
53 PF12799 LRR_4: Leucine Rich r 97.9 2.1E-05 4.5E-10 47.7 3.6 36 177-212 2-37 (44)
54 KOG2982 Uncharacterized conser 97.8 2.6E-06 5.6E-11 72.3 -1.0 79 175-253 198-285 (418)
55 COG5238 RNA1 Ran GTPase-activa 97.7 2.8E-05 6.1E-10 65.4 3.7 14 103-117 30-43 (388)
56 KOG1644 U2-associated snRNP A' 97.6 5.6E-05 1.2E-09 60.8 3.7 104 58-163 42-149 (233)
57 KOG4341 F-box protein containi 97.6 1.6E-06 3.6E-11 76.6 -5.7 257 23-287 158-443 (483)
58 KOG1644 U2-associated snRNP A' 97.6 9.9E-05 2.1E-09 59.4 4.7 51 109-163 47-97 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 7.8E-05 1.7E-09 72.5 3.8 125 153-280 121-260 (699)
60 KOG2982 Uncharacterized conser 97.5 2.8E-05 6.1E-10 66.2 0.3 197 59-260 46-262 (418)
61 KOG4579 Leucine-rich repeat (L 97.3 1.6E-05 3.5E-10 60.0 -2.7 98 61-163 30-132 (177)
62 KOG4341 F-box protein containi 97.3 3E-06 6.4E-11 75.0 -8.1 136 175-310 293-446 (483)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00032 7E-09 58.7 2.7 62 198-260 64-129 (260)
64 KOG2123 Uncharacterized conser 96.7 0.00017 3.7E-09 60.9 -2.4 84 200-287 20-105 (388)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0018 3.8E-08 54.4 3.2 100 200-302 44-155 (260)
66 PF13306 LRR_5: Leucine rich r 96.5 0.011 2.3E-07 44.7 6.7 37 125-163 7-44 (129)
67 KOG2123 Uncharacterized conser 96.3 0.00022 4.7E-09 60.4 -3.9 100 58-160 19-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.2 0.029 6.3E-07 42.3 7.6 116 150-272 8-128 (129)
69 KOG1947 Leucine rich repeat pr 95.8 0.0029 6.2E-08 59.4 0.5 88 125-212 209-308 (482)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0039 8.4E-08 31.4 0.4 18 249-266 2-19 (22)
71 PF13504 LRR_7: Leucine rich r 95.4 0.01 2.3E-07 27.8 1.4 15 248-262 2-16 (17)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0085 1.8E-07 30.2 1.0 18 178-195 2-19 (22)
73 KOG1947 Leucine rich repeat pr 93.8 0.031 6.7E-07 52.4 1.7 129 152-280 186-331 (482)
74 KOG3864 Uncharacterized conser 92.8 0.018 3.9E-07 46.7 -1.4 80 201-280 103-186 (221)
75 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.5E-06 26.4 2.2 21 246-266 1-21 (26)
76 smart00370 LRR Leucine-rich re 91.9 0.16 3.5E-06 26.4 2.2 21 246-266 1-21 (26)
77 KOG4308 LRR-containing protein 90.4 0.0023 4.9E-08 59.8 -10.2 178 82-260 89-303 (478)
78 KOG4308 LRR-containing protein 88.6 0.0077 1.7E-07 56.3 -8.1 175 105-282 89-302 (478)
79 KOG3864 Uncharacterized conser 87.4 0.12 2.7E-06 42.0 -0.8 81 224-304 102-190 (221)
80 smart00364 LRR_BAC Leucine-ric 85.9 0.46 1E-05 24.9 1.1 18 247-264 2-19 (26)
81 smart00367 LRR_CC Leucine-rich 84.3 0.75 1.6E-05 23.9 1.5 17 269-285 1-17 (26)
82 PF13516 LRR_6: Leucine Rich r 79.4 0.35 7.6E-06 24.6 -0.9 13 200-212 3-15 (24)
83 KOG0473 Leucine-rich repeat pr 73.1 0.11 2.5E-06 43.2 -5.7 80 178-259 44-123 (326)
84 smart00365 LRR_SD22 Leucine-ri 72.4 3.3 7.2E-05 21.7 1.7 14 248-261 3-16 (26)
85 KOG0473 Leucine-rich repeat pr 72.1 0.15 3.3E-06 42.5 -5.2 82 58-143 42-124 (326)
86 KOG4242 Predicted myosin-I-bin 67.9 11 0.00023 35.2 4.9 249 29-287 165-456 (553)
87 smart00368 LRR_RI Leucine rich 61.5 6.8 0.00015 20.7 1.6 14 247-260 2-15 (28)
88 PF07725 LRR_3: Leucine Rich R 59.9 8.7 0.00019 18.7 1.6 19 81-99 1-19 (20)
89 KOG3763 mRNA export factor TAP 35.1 19 0.00042 34.1 1.2 79 175-253 217-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.2e-27 Score=238.98 Aligned_cols=266 Identities=22% Similarity=0.246 Sum_probs=132.2
Q ss_pred ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCC-c-CcccEEEecCCCCCCCCCcCCcCc
Q 037308 4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPR-F-AEVKYFHWHGYPLKSLPSNLSAEK 81 (321)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~-~-~~L~~l~l~~~~l~~~~~~~~l~~ 81 (321)
+|..+.+ +++......+..+..+++|++|++++|.+++..+ ..+. . .+|++|++++|.+........+++
T Consensus 70 ~v~~L~L--~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 141 (968)
T PLN00113 70 RVVSIDL--SGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP------DDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141 (968)
T ss_pred cEEEEEe--cCCCccccCChHHhCCCCCCEEECCCCccCCcCC------hHHhccCCCCCEEECcCCccccccCccccCC
Confidence 4444444 4443333335678888899999998888665433 2211 2 566666666665532211224555
Q ss_pred eeEEeccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308 82 LVFLKVPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD 160 (321)
Q Consensus 82 L~~L~l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 160 (321)
|++|++++|.+. .++..++.+++|+. ++++.|.+.+.+|. .+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKV-LDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCE-EECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 555555555554 23334445555555 55555555444443 455555555555555554444454455555555555
Q ss_pred cCCCCCccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308 161 LSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ 237 (321)
Q Consensus 161 l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 237 (321)
+++|...+.+|.. .+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 5554433333322 24445555555554442 34444444445555555444444444444444444444444444444
Q ss_pred ccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308 238 RLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n 280 (321)
.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 44444444444444444444444 33344444444444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=234.28 Aligned_cols=261 Identities=22% Similarity=0.293 Sum_probs=170.5
Q ss_pred eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCC-CCCCcC-CcCceeEEe
Q 037308 10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLK-SLPSNL-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~-~~~~~~-~l~~L~~L~ 86 (321)
|+++++... .++...+..+++|++|++++|.+++..+.. ..++|++|++++|.+. .+|..+ .+++|++|+
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-------ccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 445555432 455555668899999999999876543320 1267777777777664 445444 677777777
Q ss_pred ccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308 87 VPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS 165 (321)
Q Consensus 87 l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~ 165 (321)
+++|.+. .++..+..+++|+. ++++.|.+.+.+|. .+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEF-LTLASNQLVGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred CccCcccccCChhhhhCcCCCe-eeccCCCCcCcCCh--HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 7777764 34555666777777 77777776655655 66777777777777777666666666777777777777765
Q ss_pred Cccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccc
Q 037308 166 KLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC 242 (321)
Q Consensus 166 ~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 242 (321)
..+.+|.. .+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 54444433 35566677777666654 5555666666777777766666666666666666666666666666666666
Q ss_pred cCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308 243 LGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 243 ~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n 280 (321)
+..+++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 666666666666666665 55666666666666666666
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.5e-25 Score=228.43 Aligned_cols=296 Identities=33% Similarity=0.508 Sum_probs=216.5
Q ss_pred CCCceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc--CcccEEEecCCCCCCCCCcCC
Q 037308 1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLS 78 (321)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~--~~L~~l~l~~~~l~~~~~~~~ 78 (321)
|++.|++|.+|++......+...+|.+|++|+.|.+..+.+..........+.++.. .+|+.|.+.+++++.+|..+.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 678999999999999888899999999999999999876533322223445566665 679999999999999999999
Q ss_pred cCceeEEeccCCcccccccCCCCCCChHhHHhhccc-cccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 79 AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCN-KLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 79 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~-~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
+.+|+.|+++++.+..++.+...+++|+. ++++.+ .+. .+| .+..+++|+.|++++|.....+|..+..+++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~-L~Ls~~~~l~-~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRN-IDLRGSKNLK-EIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCE-EECCCCCCcC-cCC---ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 99999999999999999998889999988 888654 454 665 466677788888877766666676666677777
Q ss_pred EEecCCCCCccccccc-c---------------------cCCccEEEeccccccccChhh--------------------
Q 037308 158 KLDLSGCSKLKRLLEI-S---------------------SGNINWLFLRETAIEELPSSI-------------------- 195 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~-~---------------------~~~L~~L~l~~~~i~~l~~~~-------------------- 195 (321)
.|++++|..++.+|.. . ..+|+.|++++|.+.++|..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 7777666555444432 1 334555556566655555321
Q ss_pred ----------hccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccccc--------------------CC
Q 037308 196 ----------ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL--------------------GQ 245 (321)
Q Consensus 196 ----------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~ 245 (321)
...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ ..
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence 012356667777766666677777777777777777776555555432 01
Q ss_pred CCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-Cc---cccccccccccC
Q 037308 246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LP---LARGILEDTQRS 301 (321)
Q Consensus 246 ~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~---~~l~~l~~~~~~ 301 (321)
.++|+.|++++|.++.+|.++..+++|+.|++.+|+.++.+| .+ +.++.+++.+|.
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 245667777777788899899999999999999999999988 33 455666777774
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-26 Score=205.93 Aligned_cols=283 Identities=21% Similarity=0.206 Sum_probs=206.7
Q ss_pred EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308 9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK 86 (321)
Q Consensus 9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~ 86 (321)
.|++.++.+.......++.++.||.|||+.|.++. +..+......++++|+|++|.++.+... | .+.+|..|.
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-----ccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 34556666667777888888999999999987441 1222222237888888888888877665 2 566888888
Q ss_pred ccCCcccccccCC-CCCCChHhHHhhccccccc-----------------------cCCCCCCCCCCCCccEEEccCCCC
Q 037308 87 VPYSDIEQLWNGE-KHYSNLNQIINATCNKLIA-----------------------KTPNPTLMPHLNKLVILNLRGSKS 142 (321)
Q Consensus 87 l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~-----------------------~~~~~~~~~~l~~L~~L~l~~n~~ 142 (321)
++.|+++.++... +++++|+. |++..|.|+. .+.. +.|.++.++++|+|+.|++
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~-LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLES-LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCcccccCHHHhhhcchhhh-hhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecccchh
Confidence 8888888876533 44777777 6666665541 2221 1455666777777777765
Q ss_pred CcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccc
Q 037308 143 LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSL 219 (321)
Q Consensus 143 ~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 219 (321)
...-.+++.++++|++|+++.|.....-+.. ..++|++|++++|.++++++ ++..+..|++|+++.|.+.......|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 5555566778888888888887654433322 57789999999999999885 58888899999999988776666678
Q ss_pred cCCCCCCEEEecCCCCCCcc---ccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCCCccccc----Cccc
Q 037308 220 FKLKSLGVLNLGGCSNLQRL---PECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSERIQSVS----LPLA 291 (321)
Q Consensus 220 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~~~----~~~~ 291 (321)
.++.+|+.||+++|.+...+ ...|.++++|+.|++.+|+++.+| ..+.++++|+.|++.+| .|..|+ -|..
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~ 440 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPME 440 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccch
Confidence 89999999999998775433 346778999999999999999999 57899999999999999 888876 4445
Q ss_pred cccccccc
Q 037308 292 RGILEDTQ 299 (321)
Q Consensus 292 l~~l~~~~ 299 (321)
+++|-+..
T Consensus 441 Lk~Lv~nS 448 (873)
T KOG4194|consen 441 LKELVMNS 448 (873)
T ss_pred hhhhhhcc
Confidence 55554443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.5e-26 Score=203.84 Aligned_cols=282 Identities=18% Similarity=0.127 Sum_probs=179.4
Q ss_pred ceEEEEeecCchhhhccChhhhcC-CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--Cc
Q 037308 4 KIEGICLDMSTVKEIRLNLSTFTK-MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SA 79 (321)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l 79 (321)
+++++.++ +++...+ +.++. ..+|+.|+|.+|.++ ....+.++. +-|+.+||+.|.+..++... .-
T Consensus 103 nLq~v~l~--~N~Lt~I--P~f~~~sghl~~L~L~~N~I~------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 103 NLQEVNLN--KNELTRI--PRFGHESGHLEKLDLRHNLIS------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred cceeeeec--cchhhhc--ccccccccceeEEeeeccccc------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence 44455443 3333333 33444 456999999999854 344456777 99999999999999888764 45
Q ss_pred CceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcE
Q 037308 80 EKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTK 158 (321)
Q Consensus 80 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 158 (321)
.++++|++++|+|+.+.. .+..+.+|.. +.++.|+++ .+|. ..|..+++|++|+|..|++.-.---.|+++++|+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~t-lkLsrNrit-tLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLT-LKLSRNRIT-TLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCceEEeeccccccccccccccccchhee-eecccCccc-ccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 799999999999999865 4456666777 888999999 8884 35777999999999999843322334667777777
Q ss_pred EecCCCCCcc--cccccccCCccEEEeccccccccC-hhhhcc------------------------CCCCeEecccCcc
Q 037308 159 LDLSGCSKLK--RLLEISSGNINWLFLRETAIEELP-SSIERL------------------------LRLGHLDLSDCKR 211 (321)
Q Consensus 159 L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l------------------------~~L~~L~l~~n~~ 211 (321)
|.+.+|.... .-....+.++++|++..|.++.+. .|+.++ ++|+.|+++.|.+
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 7666643211 111112444445555444444443 234444 4455555555444
Q ss_pred cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc----ccchhhhccCCcCEEeccCCCCccccc
Q 037308 212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE----RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
....+..+..+..|+.|.+++|.+...-..+|.++++|+.||+.+|.+. +-...+..+++|++|.+.|| +++.|+
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 4433344444445555555554443333345667777777777777765 33345667888889999998 888888
Q ss_pred -----Cccccccccccc
Q 037308 288 -----LPLARGILEDTQ 299 (321)
Q Consensus 288 -----~~~~l~~l~~~~ 299 (321)
-..++++|+..+
T Consensus 409 krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGD 425 (873)
T ss_pred hhhhccCcccceecCCC
Confidence 334555555444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=6.6e-24 Score=192.18 Aligned_cols=242 Identities=21% Similarity=0.259 Sum_probs=159.8
Q ss_pred cCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCC
Q 037308 52 LQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128 (321)
Q Consensus 52 ~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~ 128 (321)
|..+-. ..|+.+++++|.++.+|... ...++-.|++|+|.|.++|..+ .++..|.. ++++.|.+. .+|+ ....
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf-LDLS~NrLe-~LPP--Q~RR 171 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF-LDLSNNRLE-MLPP--QIRR 171 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh-hccccchhh-hcCH--HHHH
Confidence 333333 77777777777777777766 6777777777777777776543 35555666 777778777 7776 7777
Q ss_pred CCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC-ccccccc--ccCCccEEEeccccccccChhhhccCCCCeEe
Q 037308 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-LKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLD 205 (321)
Q Consensus 129 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 205 (321)
+..|+.|++++|.+...--.-+..+++|+.|.+++... ...+|.. .+.+|..+|++.|.+..+|+.+-.+++|++|+
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 77788888887764221111133456666666665322 2244443 46678888888888888888888888888888
Q ss_pred cccCcccccccccccCCCCCCEEEecCCCC-----------------------C-CccccccCCCCCCcEEEcccCCCcc
Q 037308 206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSN-----------------------L-QRLPECLGQLSSPIILNLAKTNVER 261 (321)
Q Consensus 206 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------~-~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (321)
+++|.++.. ....+.+.+|+.|++++|++ . ..+|.+++.+.+|+.+..++|.+.-
T Consensus 252 LS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 252 LSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred cCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 888876532 22234445555555555433 2 2355666666666666667777777
Q ss_pred cchhhhccCCcCEEeccCCCCccccc----Cccccccccccc
Q 037308 262 IPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQ 299 (321)
Q Consensus 262 l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~ 299 (321)
+|+.+++|+.|++|.++.| ++.++| +.+.+..||+..
T Consensus 331 VPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred CchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccC
Confidence 8888888888888888888 777777 556677776665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.2e-22 Score=184.10 Aligned_cols=251 Identities=23% Similarity=0.333 Sum_probs=209.0
Q ss_pred CCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCC
Q 037308 27 KMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSN 104 (321)
Q Consensus 27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~ 104 (321)
-+|-.+-.|+++|.|+|. ..|..+.. ..++.|.+....+..+|... .+.+|++|.+++|++.++...+..+|.
T Consensus 5 VLpFVrGvDfsgNDFsg~-----~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGD-----RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR 79 (1255)
T ss_pred ccceeecccccCCcCCCC-----cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh
Confidence 356678899999987753 23344454 89999999999999999987 899999999999999999999999999
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEE
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWL 181 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L 181 (321)
|+. +.+..|.+. .-..|..+.++..|..||+|.|+ +.+.|..+..-+.+-.|+++.|. +..+|.. .+..|-.|
T Consensus 80 LRs-v~~R~N~LK-nsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 80 LRS-VIVRDNNLK-NSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hHH-Hhhhccccc-cCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhh
Confidence 999 999888887 32223378899999999999998 77889889899999999999965 5556644 46667789
Q ss_pred EeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCCCCCcEEEcccCCCc
Q 037308 182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 182 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
|+++|++..+|+.+..+..|+.|++++|.+...--..+..+.+|+.|.+++.+.+ ..+|.++..+.+|+.+|++.|.+.
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 9999999999999999999999999998855433345667788888888876443 568889999999999999999999
Q ss_pred ccchhhhccCCcCEEeccCCCCccccc
Q 037308 261 RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 261 ~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
.+|+++..+++|+.|++++| .|+++.
T Consensus 236 ~vPecly~l~~LrrLNLS~N-~iteL~ 261 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGN-KITELN 261 (1255)
T ss_pred cchHHHhhhhhhheeccCcC-ceeeee
Confidence 99999999999999999999 776665
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.6e-22 Score=174.47 Aligned_cols=86 Identities=28% Similarity=0.314 Sum_probs=62.3
Q ss_pred hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC-----------------------CCccccccCCCCCCcE
Q 037308 195 IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN-----------------------LQRLPECLGQLSSPII 251 (321)
Q Consensus 195 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~L~~ 251 (321)
++.+++|..|++++|. ..++|..++.+..|+.|+++.|.+ ...-++.+.+|.+|.+
T Consensus 431 l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 4445666666666533 555666666666667776666533 2222345788899999
Q ss_pred EEcccCCCcccchhhhccCCcCEEeccCCC
Q 037308 252 LNLAKTNVERIPESIIQLFVLRYLLLSYSE 281 (321)
Q Consensus 252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 281 (321)
||+.+|.+..+|+.+++|.+|++|.++||+
T Consensus 510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCCCchhhCChhhccccceeEEEecCCc
Confidence 999999999999999999999999999993
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=3.4e-21 Score=166.36 Aligned_cols=247 Identities=24% Similarity=0.321 Sum_probs=137.8
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCC
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEK 100 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~ 100 (321)
+.+..+..+.+|++++|+. ...+++++. ..++.++.+++.+..+|..+ .+..+..++.++|.+..++++++
T Consensus 62 ~dl~nL~~l~vl~~~~n~l-------~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKL-------SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred HhhhcccceeEEEeccchh-------hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence 3445555566666665542 234444444 55555666666666555554 55666666666666666655555
Q ss_pred CCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCc
Q 037308 101 HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNI 178 (321)
Q Consensus 101 ~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L 178 (321)
.+..+.. ++...|++. ..|+ .+..+.++..|++.+|. ....|+..-++++|++++.-.|. ++.+|+. .+.+|
T Consensus 135 ~~~~l~d-l~~~~N~i~-slp~--~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 135 RLLDLED-LDATNNQIS-SLPE--DMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESL 208 (565)
T ss_pred HHhhhhh-hhccccccc-cCch--HHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhh
Confidence 6555555 555566665 5554 55556666666666655 33344333346666666655532 3444433 34455
Q ss_pred cEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCC
Q 037308 179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN 258 (321)
Q Consensus 179 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (321)
.-|++..|.+..+| .|..+..|.+|.++.|.+.....+...+++++..||+.+|+ ..+.|+.++.+.+|.+||+++|.
T Consensus 209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred HHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc
Confidence 55556666666666 35555556666666555332222333366666666666644 34455666666666666666666
Q ss_pred CcccchhhhccCCcCEEeccCCCCcccc
Q 037308 259 VERIPESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 259 l~~l~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
++.+|..++++ .|+.|-+.|| -+++|
T Consensus 287 is~Lp~sLgnl-hL~~L~leGN-PlrTi 312 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGN-PLRTI 312 (565)
T ss_pred cccCCcccccc-eeeehhhcCC-chHHH
Confidence 66666666666 6666666666 34443
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.6e-17 Score=159.90 Aligned_cols=219 Identities=21% Similarity=0.180 Sum_probs=137.1
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
++|+.|++.+|.++. .+.. .++|++|++++|.++.+|.. .++|+.|++++|.++.++... .+|..
T Consensus 222 ~~L~~L~L~~N~Lt~-------LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp---~~L~~- 286 (788)
T PRK15387 222 AHITTLVIPDNNLTS-------LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALP---SGLCK- 286 (788)
T ss_pred cCCCEEEccCCcCCC-------CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhch---hhcCE-
Confidence 367888888876542 1110 16788888888877777653 456777777777766654321 23444
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-----------------CcccCcEEecCCCCCccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-----------------NLEFLTKLDLSGCSKLKRLL 171 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-----------------~l~~L~~L~l~~~~~~~~~~ 171 (321)
++++.|.++ .+|. ..++|+.|++++|.+. .+|.... ...+|+.|++++|. +..+|
T Consensus 287 L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP 358 (788)
T PRK15387 287 LWIFGNQLT-SLPV-----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP 358 (788)
T ss_pred EECcCCccc-cccc-----cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence 555556555 4442 1245666666665532 2232110 11356666666643 33444
Q ss_pred ccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308 172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII 251 (321)
Q Consensus 172 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 251 (321)
.. +.+|+.|++++|.++.+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.+. .+|.. ..+|+.
T Consensus 359 ~l-p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~ 426 (788)
T PRK15387 359 TL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLS 426 (788)
T ss_pred CC-CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhh
Confidence 43 55666666666666666642 2467888888877654 4432 357888888887764 35543 346888
Q ss_pred EEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308 252 LNLAKTNVERIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
|++++|+++.+|..+..+++|+.|++++|+.
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 9999999999998899999999999999943
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=4.1e-17 Score=166.90 Aligned_cols=237 Identities=27% Similarity=0.310 Sum_probs=169.2
Q ss_pred CCc-CcccEEEecCCCC-------CCCCCcC-C-cCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCC
Q 037308 55 PRF-AEVKYFHWHGYPL-------KSLPSNL-S-AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPT 124 (321)
Q Consensus 55 l~~-~~L~~l~l~~~~l-------~~~~~~~-~-l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~ 124 (321)
+.. .+|++|.+..+.. ..+|..+ . ..+|+.|++.++.++.++..+ ...+|.+ +++..+.+. .++.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~-L~L~~s~l~-~L~~-- 628 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVK-LQMQGSKLE-KLWD-- 628 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcE-EECcCcccc-cccc--
Confidence 344 8899998865532 1345554 3 457999999999999988765 5688988 999999998 7876
Q ss_pred CCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc-cccccChhhhccCCC
Q 037308 125 LMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET-AIEELPSSIERLLRL 201 (321)
Q Consensus 125 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~-~i~~l~~~~~~l~~L 201 (321)
.+..+++|+.|+++++...+.+|. ++.+++|+.|++++|..+..+|.. .+.+|+.|++++| .++.+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 788899999999999876778886 888999999999999888887765 5789999999886 566777654 56777
Q ss_pred CeEecccCcccccccccc--------------------------------------------------cCCCCCCEEEec
Q 037308 202 GHLDLSDCKRLKSLPSSL--------------------------------------------------FKLKSLGVLNLG 231 (321)
Q Consensus 202 ~~L~l~~n~~~~~~~~~~--------------------------------------------------~~l~~L~~L~l~ 231 (321)
+.|++++|.....+|... ..+++|+.|+++
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 777777765443333210 012355666666
Q ss_pred CCCCCCccccccCCCCCCcEEEcccC-CCcccchhhhccCCcCEEeccCCCCccccc-Cccccccccccc
Q 037308 232 GCSNLQRLPECLGQLSSPIILNLAKT-NVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQ 299 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~ 299 (321)
+|.....+|..++.+++|+.|++++| .++.+|..+ .+++|++|++++|..++.+| .+.+++.|++.+
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 66666666666777777777777665 455666544 56667777777776666665 555555555444
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.1e-17 Score=161.63 Aligned_cols=227 Identities=20% Similarity=0.264 Sum_probs=159.7
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
.+...|++.++.++. .|..+ .++|+.|++++|.+..+|..+. ++|++|++++|.++.++..+. +.|+.
T Consensus 178 ~~~~~L~L~~~~Lts-------LP~~I-p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~- 245 (754)
T PRK15370 178 NNKTELRLKILGLTT-------IPACI-PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQE- 245 (754)
T ss_pred cCceEEEeCCCCcCc-------CCccc-ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccE-
Confidence 356778887765441 11111 1578888888888888876543 578888888888887765432 35777
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i 188 (321)
+++++|.+. .+|. .+. .+|+.|++++|.+ ..+|..+. ++|+.|++++|. ++.+|...+++|+.|++++|.+
T Consensus 246 L~Ls~N~L~-~LP~--~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 246 MELSINRIT-ELPE--RLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred EECcCCccC-cCCh--hHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCcc
Confidence 888888887 7765 442 4788888888874 45676442 578888888864 4455554456788888888888
Q ss_pred cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhc
Q 037308 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ 268 (321)
Q Consensus 189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~ 268 (321)
+.+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.+|..+.
T Consensus 317 t~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~- 387 (754)
T PRK15370 317 TALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP- 387 (754)
T ss_pred ccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH-
Confidence 88775442 578888888887654 554442 68888888887764 4555443 578889998888888887664
Q ss_pred cCCcCEEeccCCCCccccc
Q 037308 269 LFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 269 l~~L~~L~l~~n~~l~~~~ 287 (321)
..|+.|++++| .+..+|
T Consensus 388 -~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 388 -AALQIMQASRN-NLVRLP 404 (754)
T ss_pred -HHHHHHhhccC-CcccCc
Confidence 36888888888 777766
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.2e-17 Score=159.50 Aligned_cols=225 Identities=22% Similarity=0.303 Sum_probs=175.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
++|+.|++++|.++. .+..+ ..+|+.|++++|.+..+|..+ .++|+.|++++|.+..++..+. .+|+.
T Consensus 199 ~~L~~L~Ls~N~Lts-------LP~~l-~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~- 266 (754)
T PRK15370 199 EQITTLILDNNELKS-------LPENL-QGNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQS- 266 (754)
T ss_pred cCCcEEEecCCCCCc-------CChhh-ccCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCE-
Confidence 579999999998652 12111 268999999999999988754 3589999999999998876543 46778
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i 188 (321)
|++++|.++ .+|. .+. .+|+.|++++|.+ ..+|..+ .++|+.|++++|. +..+|...+++|+.|++++|.+
T Consensus 267 L~Ls~N~L~-~LP~--~l~--~sL~~L~Ls~N~L-t~LP~~l--p~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 267 LDLFHNKIS-CLPE--NLP--EELRYLSVYDNSI-RTLPAHL--PSGITHLNVQSNS-LTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred EECcCCccC-cccc--ccC--CCCcEEECCCCcc-ccCcccc--hhhHHHHHhcCCc-cccCCccccccceeccccCCcc
Confidence 999999999 7775 443 5899999999984 4566544 2578999999975 4456655578999999999999
Q ss_pred cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhh-
Q 037308 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESII- 267 (321)
Q Consensus 189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~- 267 (321)
+.+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|++. .+|..+. .+|+.|++++|+++.+|..+.
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence 99997653 78999999999866 456544 368999999998765 5666543 379999999999998886553
Q ss_pred ---ccCCcCEEeccCCCC
Q 037308 268 ---QLFVLRYLLLSYSER 282 (321)
Q Consensus 268 ---~l~~L~~L~l~~n~~ 282 (321)
.++.+..|++.+|+.
T Consensus 410 ~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HhhcCCCccEEEeeCCCc
Confidence 457889999999953
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=8.6e-17 Score=154.89 Aligned_cols=227 Identities=23% Similarity=0.184 Sum_probs=145.2
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
.+-..|+++.+.++ . .|..+. .+|+.|++.+|.++.+|.. +++|++|++++|+++.++.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-s------LP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~- 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-T------LPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLE- 266 (788)
T ss_pred CCCcEEEcCCCCCC-c------CCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccce-
Confidence 45678999988754 1 222222 5899999999999999864 78999999999999988643 457777
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i 188 (321)
|+++.|.+. .+|. . ..+|+.|++++|. +..+|. ..++|+.|++++|. +..+|.. +.+|+.|++++|.+
T Consensus 267 L~Ls~N~L~-~Lp~--l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l-p~~L~~L~Ls~N~L 334 (788)
T PRK15387 267 LSIFSNPLT-HLPA--L---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQL 334 (788)
T ss_pred eeccCCchh-hhhh--c---hhhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC-cccccccccccCcc
Confidence 999999998 6664 2 3678899999998 556675 35789999999974 4455554 56777788888887
Q ss_pred cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhc
Q 037308 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ 268 (321)
Q Consensus 189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~ 268 (321)
+++|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.++.+|..
T Consensus 335 ~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l--- 400 (788)
T PRK15387 335 TSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL--- 400 (788)
T ss_pred cccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---
Confidence 777642 2467777787777554 3321 234445555544433 23321 23445555555555544421
Q ss_pred cCCcCEEeccCCCCccccc-Ccccccccc
Q 037308 269 LFVLRYLLLSYSERIQSVS-LPLARGILE 296 (321)
Q Consensus 269 l~~L~~L~l~~n~~l~~~~-~~~~l~~l~ 296 (321)
.++|++|++++| .++.+| .|.+++.|+
T Consensus 401 ~s~L~~LdLS~N-~LssIP~l~~~L~~L~ 428 (788)
T PRK15387 401 PSELKELMVSGN-RLTSLPMLPSGLLSLS 428 (788)
T ss_pred ccCCCEEEccCC-cCCCCCcchhhhhhhh
Confidence 134444444444 344444 333333333
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.3e-18 Score=164.06 Aligned_cols=217 Identities=25% Similarity=0.346 Sum_probs=145.3
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
.+|++++++.+.+..+|.++ .+.+|+.++..+|++..++.......+|+. +.+..|.++ .+|. ...+++.|+.|+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~-l~~~~nel~-yip~--~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS-LSAAYNELE-YIPP--FLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH-HHhhhhhhh-hCCC--cccccceeeeee
Confidence 89999999999999999776 899999999999999999999999999999 999999999 8876 788899999999
Q ss_pred ccCCCCCcccCccc-cCcc-cCcEEe------------------------cCCCCCccc-cccc-ccCCccEEEeccccc
Q 037308 137 LRGSKSLKSLPSGI-FNLE-FLTKLD------------------------LSGCSKLKR-LLEI-SSGNINWLFLRETAI 188 (321)
Q Consensus 137 l~~n~~~~~~p~~l-~~l~-~L~~L~------------------------l~~~~~~~~-~~~~-~~~~L~~L~l~~~~i 188 (321)
+..|. +..+|+.+ .... +|..++ +.+|..... +|.. .+..|+.|+++.|.+
T Consensus 317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 99988 55555532 1111 233333 333332221 2222 355566666666666
Q ss_pred cccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc--ccchh
Q 037308 189 EELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE--RIPES 265 (321)
Q Consensus 189 ~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~ 265 (321)
..+|.+ +.++..|++|++++|++. .+|..+..+..|+.|...+|.+. .+| .+..+++|+.+|++.|.++ .+|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 666643 455566666666666633 34455566666666666554432 333 4556666666666666666 33322
Q ss_pred hhccCCcCEEeccCCCCc
Q 037308 266 IIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 266 l~~l~~L~~L~l~~n~~l 283 (321)
+.. ++|++|+++||.++
T Consensus 473 ~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred CCC-cccceeeccCCccc
Confidence 221 56666666666543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.9e-18 Score=133.46 Aligned_cols=173 Identities=25% Similarity=0.355 Sum_probs=138.0
Q ss_pred CCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc
Q 037308 70 LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG 149 (321)
Q Consensus 70 l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 149 (321)
+..++..+.+++++.|.+++|+++.++.....+.+++. +++..|.++ ++|. .+..+++|+.|++..|+ ....|..
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlev-ln~~nnqie-~lp~--~issl~klr~lnvgmnr-l~~lprg 97 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEV-LNLSNNQIE-ELPT--SISSLPKLRILNVGMNR-LNILPRG 97 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhh-hhcccchhh-hcCh--hhhhchhhhheecchhh-hhcCccc
Confidence 34566667888888888888888888888888888888 888888888 8876 88888888888888877 6677877
Q ss_pred ccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308 150 IFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229 (321)
Q Consensus 150 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 229 (321)
|+.++.|+.|++..|..-+ ..+|..|..+..|+.|++++|. ...+|..++.+++|+.|.
T Consensus 98 fgs~p~levldltynnl~e--------------------~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNE--------------------NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred cCCCchhhhhhcccccccc--------------------ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 8888888888777654222 1367678888889999999977 556777889999999999
Q ss_pred ecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhcc
Q 037308 230 LGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQL 269 (321)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l 269 (321)
+.+|... .+|..++.++.|++|.+.+|+++.+|..++.+
T Consensus 157 lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred eccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 9987654 45678889999999999999999999777654
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=9.5e-19 Score=164.99 Aligned_cols=258 Identities=22% Similarity=0.285 Sum_probs=193.2
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCC
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSN 104 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~ 104 (321)
+..+++|+.+....|++. .-.+..++++.++...|++..+-......+|++++++.+++..++.-++.+.+
T Consensus 195 ls~~~~l~~l~c~rn~ls---------~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLS---------ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred hhhccchhhhhhhhcccc---------eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhccc
Confidence 445556666666555421 00112288999999999988655555788999999999999999988899999
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-----------
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI----------- 173 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~----------- 173 (321)
++. +....|.++ .+|. .+...++|++|.+.+|. ...+|+...++++|++|++..|.. ..+|..
T Consensus 266 le~-l~~n~N~l~-~lp~--ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 266 LEA-LNANHNRLV-ALPL--RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNT 339 (1081)
T ss_pred ceE-ecccchhHH-hhHH--HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHH
Confidence 999 999999998 8877 78889999999999998 777888788899999999998643 222221
Q ss_pred -----------------ccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308 174 -----------------SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 174 -----------------~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 234 (321)
..+.|+.|.+.+|.+++ +| .+.+.+.|+.|++++|.+.......+.+++.|+.|++++|.
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 22335666666777665 33 36667778888888877444444557777888888888854
Q ss_pred CCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----Cc-cccccccccccC
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LP-LARGILEDTQRS 301 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~-~~l~~l~~~~~~ 301 (321)
...+|+++..+..|+.|...+|++..+| .+..++.|+.+|++.| .|+.+- .| +++++||..+..
T Consensus 419 -L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 419 -LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence 4556677777888888888888888888 6778888999999888 776664 77 888899888855
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=128.58 Aligned_cols=172 Identities=27% Similarity=0.391 Sum_probs=138.0
Q ss_pred cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccC
Q 037308 97 NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG 176 (321)
Q Consensus 97 ~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 176 (321)
.+++.+.+++. +.+++|+++ .+|. .++.+.+|+.|++++|+ +..+|..++.+++|++|+++-
T Consensus 27 ~gLf~~s~ITr-LtLSHNKl~-~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm------------- 88 (264)
T KOG0617|consen 27 PGLFNMSNITR-LTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM------------- 88 (264)
T ss_pred ccccchhhhhh-hhcccCcee-ecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-------------
Confidence 45566666666 777888887 7765 77778888888888877 667777677777777776664
Q ss_pred CccEEEeccccccccChhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc
Q 037308 177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA 255 (321)
Q Consensus 177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 255 (321)
|++.-+|.+|+.++.|+.||++.|++.. .+|..|..+..|+.|++++|. ...+|..++.+++|+.|.+.
T Consensus 89 ---------nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 89 ---------NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred ---------hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeec
Confidence 4455567789999999999999998775 678889999999999999965 46677889999999999999
Q ss_pred cCCCcccchhhhccCCcCEEeccCCCCcccccCccccccccccc
Q 037308 256 KTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQ 299 (321)
Q Consensus 256 ~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~~~l~~l~~~~ 299 (321)
.|.+-++|..++.++.|++|+|.+| +++.+| +.+..++...
T Consensus 159 dndll~lpkeig~lt~lrelhiqgn-rl~vlp--pel~~l~l~~ 199 (264)
T KOG0617|consen 159 DNDLLSLPKEIGDLTRLRELHIQGN-RLTVLP--PELANLDLVG 199 (264)
T ss_pred cCchhhCcHHHHHHHHHHHHhcccc-eeeecC--hhhhhhhhhh
Confidence 9999999999999999999999999 888855 5555554433
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=1.2e-16 Score=142.01 Aligned_cols=235 Identities=20% Similarity=0.169 Sum_probs=116.5
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-------cC-CcCceeEEeccCCccc
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-------NL-SAEKLVFLKVPYSDIE 93 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-------~~-~l~~L~~L~l~~~~l~ 93 (321)
..+..+.+|+.+++.++.+++... ...+..+.. ++++.+++.++.+...+. .+ .+++|+.|++++|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~--~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAA--KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHH--HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 456667789999999987654321 122333444 778999998877653222 12 5778888888888875
Q ss_pred ccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc----ccCccccCc-ccCcEEecCCCCCc
Q 037308 94 QLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK----SLPSGIFNL-EFLTKLDLSGCSKL 167 (321)
Q Consensus 94 ~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l-~~L~~L~l~~~~~~ 167 (321)
... ..+..+.. . ++|++|++++|.+.. .+...+..+ ++|+.+++++|...
T Consensus 95 ~~~~~~~~~l~~-----------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 95 PDGCGVLESLLR-----------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hhHHHHHHHHhc-----------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 311 11111111 1 335555555544321 111122233 44555555554432
Q ss_pred cc----cccc--ccCCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecC
Q 037308 168 KR----LLEI--SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGG 232 (321)
Q Consensus 168 ~~----~~~~--~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~ 232 (321)
.. ++.. .+.+|++|++++|.+++ ++..+..+++|++|++++|.+.+. +...+..+++|+.|++++
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 11 1111 12345555555555542 222233344666666666554422 222344555666666666
Q ss_pred CCCCCccccccC-----CCCCCcEEEcccCCCc-----ccchhhhccCCcCEEeccCCCCcc
Q 037308 233 CSNLQRLPECLG-----QLSSPIILNLAKTNVE-----RIPESIIQLFVLRYLLLSYSERIQ 284 (321)
Q Consensus 233 ~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~~l~ 284 (321)
|.+.......+. ..+.|+.|++++|.++ .+...+..++.|+++++++| .+.
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~ 291 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFG 291 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCc
Confidence 554431111111 1256666666666654 23334444556666666666 443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=4.9e-15 Score=131.68 Aligned_cols=227 Identities=20% Similarity=0.126 Sum_probs=151.8
Q ss_pred CcccEEEecCCCCCC-----CCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCC
Q 037308 58 AEVKYFHWHGYPLKS-----LPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNK 131 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~-----~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~ 131 (321)
..|+.+++.++.+.. ++... ..++++.++++++.+..... .+. .++. .+..+++
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~------~~~------------~~~~--~l~~~~~ 82 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR------GLQ------------SLLQ--GLTKGCG 82 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch------HHH------------HHHH--HHHhcCc
Confidence 557777777776532 22222 45567777776665542100 000 1222 4555789
Q ss_pred ccEEEccCCCCCcccCccccCccc---CcEEecCCCCCccc----cccc--cc-CCccEEEeccccccc-----cChhhh
Q 037308 132 LVILNLRGSKSLKSLPSGIFNLEF---LTKLDLSGCSKLKR----LLEI--SS-GNINWLFLRETAIEE-----LPSSIE 196 (321)
Q Consensus 132 L~~L~l~~n~~~~~~p~~l~~l~~---L~~L~l~~~~~~~~----~~~~--~~-~~L~~L~l~~~~i~~-----l~~~~~ 196 (321)
|++|++++|.+....+..+..+.+ |+.|++++|..... +... .. ++|+.|++++|.++. ++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999999876555554555555 99999999865421 1111 24 789999999999983 444567
Q ss_pred ccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCccc-chhh-
Q 037308 197 RLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVERI-PESI- 266 (321)
Q Consensus 197 ~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~l-~~~l- 266 (321)
.+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|.++.. ...+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 778999999999988742 333455667999999999987643 345667789999999999998842 1222
Q ss_pred hc----cCCcCEEeccCCCCcc---------cccCccccccccccccCccch
Q 037308 267 IQ----LFVLRYLLLSYSERIQ---------SVSLPLARGILEDTQRSPHMD 305 (321)
Q Consensus 267 ~~----l~~L~~L~l~~n~~l~---------~~~~~~~l~~l~~~~~~~~~~ 305 (321)
.. .+.|++|++.+| .++ .++..+.++.+++.++.....
T Consensus 243 ~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 243 SALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 22 379999999999 664 112235788888888666544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=2.7e-16 Score=135.93 Aligned_cols=260 Identities=16% Similarity=0.104 Sum_probs=126.4
Q ss_pred cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecC-CCCCCCCCcC--CcCceeEEec
Q 037308 12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHG-YPLKSLPSNL--SAEKLVFLKV 87 (321)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~-~~l~~~~~~~--~l~~L~~L~l 87 (321)
+..+.+..+++.+|+.+++||+|||++|.++ ...+.+++- +.+-.|-+.+ |+++.+|... ++..++.|.+
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchh------hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3344445666777777778888888777744 223334444 4555444444 6777777653 6777777777
Q ss_pred cCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc------------ccCccccCcc
Q 037308 88 PYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK------------SLPSGIFNLE 154 (321)
Q Consensus 88 ~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~p~~l~~l~ 154 (321)
.-|++.-+. +.+..++++.. +.+-+|.+. .++. +.|..+..++.+.+..|.++. ..|..+++..
T Consensus 148 Nan~i~Cir~~al~dL~~l~l-LslyDn~~q-~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSL-LSLYDNKIQ-SICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred ChhhhcchhHHHHHHhhhcch-hcccchhhh-hhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 666665443 34455666665 666677666 5442 356777777777776665322 1122222221
Q ss_pred cCcEEecCCCCCccccccc-ccCCccEE--Ee-ccc-cccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEE
Q 037308 155 FLTKLDLSGCSKLKRLLEI-SSGNINWL--FL-RET-AIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVL 228 (321)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L--~l-~~~-~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 228 (321)
...-.-+.... +...... ....++.+ .+ +.+ ....-|. .|..+++|++|++++|+++..-+.+|.+...++.|
T Consensus 225 c~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 11111111000 0000000 00001111 00 011 1111221 24555555555555555555444555555555555
Q ss_pred EecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCC
Q 037308 229 NLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSE 281 (321)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~ 281 (321)
.+.+|++...-...|.++..|+.|++.+|+|+.+. ..|..+..|.+|.+-+|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 55555443333334555555555555555555332 344445555555555443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=8e-15 Score=126.96 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=149.6
Q ss_pred CcccEEEecCCCCCCCCCcC--CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
+.-..++|..|.++.+|... .+++|+.|++++|.|+.+ +.++..++.+.+++..++|+|+ .+|. ..|.++.+++-
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k-~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK-GAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh-hHhhhHHHHHH
Confidence 44556777777777777763 677777777777777776 4566777777774444667777 5553 24666666666
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc--------------------------
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE-------------------------- 185 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-------------------------- 185 (321)
|.+.-|.+.......|..++++..|.+.+|. +..++.. ....++.+.+..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 6555554333333344445555555555432 1111110 111222222222
Q ss_pred ----------ccccccChh-h-hccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEE
Q 037308 186 ----------TAIEELPSS-I-ERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIIL 252 (321)
Q Consensus 186 ----------~~i~~l~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 252 (321)
.++..++.. + ....++..--.+.+...+..| ..|..+++|+.|++++|++...-+.+|.++.++++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 222222211 1 111122111122233344444 358899999999999999988888899999999999
Q ss_pred EcccCCCcccch-hhhccCCcCEEeccCCCCccccc--Cc---cccccccccccCccchhhHHHHHHHHH
Q 037308 253 NLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS--LP---LARGILEDTQRSPHMDHKLAVRWQEVQ 316 (321)
Q Consensus 253 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~--~~---~~l~~l~~~~~~~~~~~~l~~~~~~~~ 316 (321)
.+.+|++..+.. .|.++..|+.|++.+| +|+.+. -. .++..+.+.. .+.-......|-+-|
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~--Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLS--NPFNCNCRLAWLGEW 370 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehcc--CcccCccchHHHHHH
Confidence 999999998774 5688999999999999 887774 22 3444444433 222233445555544
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.9e-13 Score=116.83 Aligned_cols=254 Identities=19% Similarity=0.161 Sum_probs=167.6
Q ss_pred eEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCC----CCCCCc---
Q 037308 5 IEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPL----KSLPSN--- 76 (321)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l----~~~~~~--- 76 (321)
+++..+-+...++.....+.+..+..++.+++++|.|..... -.....+.. +.|+..+|+.-.. ..+|..
T Consensus 6 ~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa--~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~ 83 (382)
T KOG1909|consen 6 IGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAA--RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM 83 (382)
T ss_pred cCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHH--HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH
Confidence 344444444444455555677788999999999998654333 223344555 8888888875433 333332
Q ss_pred -----CCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc------
Q 037308 77 -----LSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS------ 145 (321)
Q Consensus 77 -----~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------ 145 (321)
...++|+.++||+|.+.. .+. +-+.. .+.++..|++|++.+|.+...
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~--~g~---~~l~~-----------------ll~s~~~L~eL~L~N~Glg~~ag~~l~ 141 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGP--KGI---RGLEE-----------------LLSSCTDLEELYLNNCGLGPEAGGRLG 141 (382)
T ss_pred HHHHHhcCCceeEeeccccccCc--cch---HHHHH-----------------HHHhccCHHHHhhhcCCCChhHHHHHH
Confidence 267799999999998753 111 11111 233345555555555552211
Q ss_pred -------cCccccCcccCcEEecCCCCCccccc----cc--ccCCccEEEeccccccc-----cChhhhccCCCCeEecc
Q 037308 146 -------LPSGIFNLEFLTKLDLSGCSKLKRLL----EI--SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLS 207 (321)
Q Consensus 146 -------~p~~l~~l~~L~~L~l~~~~~~~~~~----~~--~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~ 207 (321)
...-...-+.|+.++.++|.....-. .. ..+.|+.+.+.+|+|.. +..++.++++|++||+.
T Consensus 142 ~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 142 RALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred HHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence 00112235678888888876433211 11 35789999999998874 33468899999999999
Q ss_pred cCcccc----cccccccCCCCCCEEEecCCCCCCcccccc-----CCCCCCcEEEcccCCCc-----ccchhhhccCCcC
Q 037308 208 DCKRLK----SLPSSLFKLKSLGVLNLGGCSNLQRLPECL-----GQLSSPIILNLAKTNVE-----RIPESIIQLFVLR 273 (321)
Q Consensus 208 ~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~ 273 (321)
+|.++. .+...++.|+.|+.|++++|.+......++ ...|+|+.|.+.+|.++ .+..++...+.|+
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 998775 344567789999999999998876543322 34789999999999998 3444667789999
Q ss_pred EEeccCCCCc
Q 037308 274 YLLLSYSERI 283 (321)
Q Consensus 274 ~L~l~~n~~l 283 (321)
+|++++| ++
T Consensus 302 kLnLngN-~l 310 (382)
T KOG1909|consen 302 KLNLNGN-RL 310 (382)
T ss_pred HhcCCcc-cc
Confidence 9999999 55
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=1.5e-13 Score=124.17 Aligned_cols=209 Identities=23% Similarity=0.351 Sum_probs=159.1
Q ss_pred EEecCCCCCCCCCcC---CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccC
Q 037308 63 FHWHGYPLKSLPSNL---SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG 139 (321)
Q Consensus 63 l~l~~~~l~~~~~~~---~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 139 (321)
+.|++-.++.+|..- .+..-+..+++.|++..++..+..+..|+. +.+..|.+. .+|. .+..+..|.+|+++.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~-liLy~n~~r-~ip~--~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLES-LILYHNCIR-TIPE--AICNLEALTFLDLSS 130 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHH-HHHHhccce-ecch--hhhhhhHHHHhhhcc
Confidence 345555556666542 566677888899999998888888888888 888888888 8877 888899999999999
Q ss_pred CCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217 (321)
Q Consensus 140 n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 217 (321)
|+ +..+|..+..++ |+.|.+++|. ++.+|.. ....|..||++.|.+..+|..++++.+|+.|.+..|+ ...+|.
T Consensus 131 Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~ 206 (722)
T KOG0532|consen 131 NQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPE 206 (722)
T ss_pred ch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCH
Confidence 88 667776665555 8888888754 4444433 4667888889999998888888888889999888877 445666
Q ss_pred cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhh---ccCCcCEEeccCCC
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESII---QLFVLRYLLLSYSE 281 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~---~l~~L~~L~l~~n~ 281 (321)
.+..+ .|..||++. +.+..+|-.|+.|+.|+.|-|.+|.+++-|..+. ...-.|+|++..|+
T Consensus 207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 66644 478888876 4467788888999999999999999988776653 34456788888884
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.5e-13 Score=124.18 Aligned_cols=193 Identities=27% Similarity=0.295 Sum_probs=157.7
Q ss_pred eEEeccCCcccccccCCCC--CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308 83 VFLKVPYSDIEQLWNGEKH--YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD 160 (321)
Q Consensus 83 ~~L~l~~~~l~~~~~~~~~--l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 160 (321)
-.|.|++-+++.++.+... +..-.. .+++.|.+. ++|. .+..+..|+.+.++.|. +..+|..+..+..|++++
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~-aDlsrNR~~-elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVF-ADLSRNRFS-ELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFLD 127 (722)
T ss_pred cccccccchhhcCCCccccccccchhh-hhccccccc-cCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhh
Confidence 3556667777777654443 223334 888999999 9988 88889999999999987 667787788999999999
Q ss_pred cCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc
Q 037308 161 LSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL 239 (321)
Q Consensus 161 l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 239 (321)
++.|. +..+|.. ..-.|+.|.+++|+++.+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|+.. .+
T Consensus 128 ls~Nq-lS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 128 LSSNQ-LSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred hccch-hhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 99965 5555544 455899999999999999998998899999999998854 56778999999999999997654 45
Q ss_pred ccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308 240 PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~ 285 (321)
|+.++.+ .|..||+++|++..+|.+|.+++.|++|-|.+| -|+.
T Consensus 205 p~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqS 248 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQS 248 (722)
T ss_pred CHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccC-CCCC
Confidence 5666655 599999999999999999999999999999999 4444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.8e-10 Score=105.51 Aligned_cols=189 Identities=27% Similarity=0.289 Sum_probs=106.1
Q ss_pred EEecCCCC-CCCCCcCCcCceeEEeccCCcccccccCCCCCC-ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308 63 FHWHGYPL-KSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS-NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS 140 (321)
Q Consensus 63 l~l~~~~l-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~-~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n 140 (321)
+....+.+ .........+.++.+++.++.+.+++....... +++. ++++.|.+. .++. .+..++.|+.|++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~-L~l~~N~i~-~l~~--~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE-LDLSDNKIE-SLPS--PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccc-ccccccchh-hhhh--hhhccccccccccCCc
Confidence 44444444 222222244566666666666666655555553 6666 666666666 5543 4566666666666666
Q ss_pred CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccccc
Q 037308 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSS 218 (321)
Q Consensus 141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 218 (321)
. +..+|...+..+.|+.|++++|. +..+|.. .+..|+.+.+++|.+.+.+..+..+..+..+.+..|.+. ..+..
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 6 44555433356666666666643 3333332 344466666666655555555556666666665555533 22445
Q ss_pred ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
++.+++++.|++++|.+...- . ++...+++.|+++++.+.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hccccccceeccccccccccc-c-ccccCccCEEeccCcccc
Confidence 556666666666665443332 2 556666666666666655
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.5e-10 Score=104.68 Aligned_cols=176 Identities=30% Similarity=0.382 Sum_probs=122.1
Q ss_pred CcccEEEecCCCCCCCCCcCCcC--ceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAE--KLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL 135 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L 135 (321)
..++.+++.++.+..++...... +|+.|++++|.+..++.....+++|+. ++++.|.+. .++. .....+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~-L~l~~N~l~-~l~~--~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN-LDLSFNDLS-DLPK--LLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccc-cccCCchhh-hhhh--hhhhhhhhhhe
Confidence 56778888888887777766443 788888888888777666777788888 888888887 6664 44477788888
Q ss_pred EccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccc
Q 037308 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKS 214 (321)
Q Consensus 136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~ 214 (321)
++++|. +..+|........|+.+.++.|......... ...++..+.+.+|.+..++..+..++.++.|++++|.+...
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 888877 5566664445566788888776433332222 35566667777777777666677777788888888775543
Q ss_pred ccccccCCCCCCEEEecCCCCCCccc
Q 037308 215 LPSSLFKLKSLGVLNLGGCSNLQRLP 240 (321)
Q Consensus 215 ~~~~~~~l~~L~~L~l~~~~~~~~~~ 240 (321)
.. ++.+.+++.|+++++......+
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc--ccccCccCEEeccCccccccch
Confidence 33 6777888888888776654443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-11 Score=106.55 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=114.3
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC---CcCceeEEeccCCcccc--cc
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL---SAEKLVFLKVPYSDIEQ--LW 96 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~---~l~~L~~L~l~~~~l~~--~~ 96 (321)
.....+++++.||+++|.|+ .+.....-... |+|+.|+++.|.+....+.. .+++|+.|.+++|.++. +-
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH
Confidence 35566888888888888765 23333333344 88888888888765543321 68888888888888762 12
Q ss_pred cCCCCCCChHhHHhhcccc-ccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCcc--cccc
Q 037308 97 NGEKHYSNLNQIINATCNK-LIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLK--RLLE 172 (321)
Q Consensus 97 ~~~~~l~~L~~~l~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~--~~~~ 172 (321)
.-...+|.++. +++..|. +. .... ...-++.|+.|||++|.+..... ...+.++.|..|+++.|...+ .++.
T Consensus 216 ~~~~~fPsl~~-L~L~~N~~~~-~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 216 WILLTFPSLEV-LYLEANEIIL-IKAT--STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred HHHHhCCcHHH-hhhhcccccc-eecc--hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence 23357788888 8886663 22 2221 45567788888888887543321 225567778888777754322 1111
Q ss_pred ------cccCCccEEEeccccccccCh--hhhccCCCCeEecccCccc
Q 037308 173 ------ISSGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCKRL 212 (321)
Q Consensus 173 ------~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~~~ 212 (321)
..+++|++|++..|.+.+++. .+..+++|+.|.+..|.+.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 136677777777777766552 3555667777776666654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=1.2e-10 Score=98.19 Aligned_cols=102 Identities=25% Similarity=0.241 Sum_probs=52.3
Q ss_pred cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEc
Q 037308 175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNL 254 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 254 (321)
.+.++.|+++.|++..+.. +..+++|+.||+++|.+. ....+...+.+.+.|.+++|.+.+. .+++.+-+|..||+
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccc
Confidence 3444444444455544443 445555555555555422 2333334455555555555443222 23444555666666
Q ss_pred ccCCCcccch--hhhccCCcCEEeccCC
Q 037308 255 AKTNVERIPE--SIIQLFVLRYLLLSYS 280 (321)
Q Consensus 255 ~~n~l~~l~~--~l~~l~~L~~L~l~~n 280 (321)
++|++..+.+ .++++|+|+.+.+.+|
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCC
Confidence 6666654432 4556666666666666
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.4e-10 Score=91.49 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=14.0
Q ss_pred hhccCCCCeEecccCccccccc---ccccCCCCCCEEEe
Q 037308 195 IERLLRLGHLDLSDCKRLKSLP---SSLFKLKSLGVLNL 230 (321)
Q Consensus 195 ~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l 230 (321)
+..+++|+.|++.+|.+..... ..+..+|+|+.||-
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 4455556666666655443211 13445566666654
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.5e-09 Score=104.58 Aligned_cols=110 Identities=28% Similarity=0.363 Sum_probs=98.5
Q ss_pred ccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308 178 INWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK 256 (321)
Q Consensus 178 L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 256 (321)
++.|++++|.+.+ +|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 7789999999985 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-ccchhhhcc-CCcCEEeccCCCCccccc
Q 037308 257 TNVE-RIPESIIQL-FVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 257 n~l~-~l~~~l~~l-~~L~~L~l~~n~~l~~~~ 287 (321)
|.++ .+|..+... .++..+++.+|+.+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9998 889877653 467789999998777655
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7e-10 Score=88.76 Aligned_cols=126 Identities=25% Similarity=0.188 Sum_probs=35.2
Q ss_pred ccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308 150 IFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV 227 (321)
Q Consensus 150 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 227 (321)
+.+..+++.|++.+|.. ..+... .+.+|+.|++++|.++.++ ++..++.|+.|++++|.+....+.....+++|+.
T Consensus 15 ~~n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-ccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34555666777776442 222211 2456666666666666665 3555666666666666654432211134566666
Q ss_pred EEecCCCCCC--ccccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEecc
Q 037308 228 LNLGGCSNLQ--RLPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLS 278 (321)
Q Consensus 228 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~ 278 (321)
|++++|.+.. .+ ..+..+++|+.|++.+|.++.-+. .+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6666655432 12 344456666666666666653321 23455666555443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1e-10 Score=103.05 Aligned_cols=86 Identities=19% Similarity=0.121 Sum_probs=33.7
Q ss_pred cCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcE
Q 037308 175 SGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPII 251 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 251 (321)
++.|+.|.+++|+++. +...+...|+|+.|++..|...........-+..|+.|++++|++...- -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 4444445554444442 2222233344444444444322211112223334444444444433221 112333444444
Q ss_pred EEcccCCCc
Q 037308 252 LNLAKTNVE 260 (321)
Q Consensus 252 L~l~~n~l~ 260 (321)
|+++.|.+.
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 444444444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.2e-10 Score=98.11 Aligned_cols=200 Identities=17% Similarity=0.067 Sum_probs=135.1
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhcccccc-ccCCCCCCCCCCCCccEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLI-AKTPNPTLMPHLNKLVIL 135 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~-~~~~~~~~~~~l~~L~~L 135 (321)
++|..+.++.|.-..+.+.. .-|.|..+.+.+..++..+. +-....+.. ...+..... |.... ...-++.|+.+
T Consensus 214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D-~~~~E~~t~~G~~~~--~~dTWq~Ltel 289 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILAD-PSGSEPSTSNGSALV--SADTWQELTEL 289 (490)
T ss_pred hhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcC-ccCCCCCccCCceEE--ecchHhhhhhc
Confidence 77777777777766555443 56777888776666654321 111111111 111111111 12111 34557789999
Q ss_pred EccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccc
Q 037308 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSL 215 (321)
Q Consensus 136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~ 215 (321)
|+|+|. +..+-.+..-.+.++.|+++.|.....-.-..+++|+.||+++|.++++..|-..+-++++|.+++|.+-+ +
T Consensus 290 DLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~-L 367 (490)
T KOG1259|consen 290 DLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET-L 367 (490)
T ss_pred cccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh-h
Confidence 999987 55555556668899999999976554333335889999999999999988776677889999999987543 2
Q ss_pred cccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch
Q 037308 216 PSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE 264 (321)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~ 264 (321)
..+..+-+|.+||+++|++... --..++.+|-|+.+.+.+|.+..+++
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 3466788999999999877542 12477889999999999999886553
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-10 Score=100.09 Aligned_cols=177 Identities=18% Similarity=0.078 Sum_probs=126.1
Q ss_pred CCCCCCCccEEEccCCCCCcccCc----cccCcccCcEEecCCCCCcc----cccc-----------cccCCccEEEecc
Q 037308 125 LMPHLNKLVILNLRGSKSLKSLPS----GIFNLEFLTKLDLSGCSKLK----RLLE-----------ISSGNINWLFLRE 185 (321)
Q Consensus 125 ~~~~l~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~L~l~~~~~~~----~~~~-----------~~~~~L~~L~l~~ 185 (321)
.+.++++|++|+||+|.+....+. .+..++.|++|.+.+|.... .+.. ...+.|++++...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 456677999999999996544333 34568999999999985421 1000 1467899999999
Q ss_pred ccccccC-----hhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEE
Q 037308 186 TAIEELP-----SSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIIL 252 (321)
Q Consensus 186 ~~i~~l~-----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L 252 (321)
|++...+ ..+...+.|+.+.++.|.+... ....+.+++.|+.|||.+|-+... +...++.+++|+.+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 9998744 3466678999999999887542 334578999999999999866532 45677888999999
Q ss_pred EcccCCCc-----ccchhh-hccCCcCEEeccCCCCccc-cc--------CccccccccccccCc
Q 037308 253 NLAKTNVE-----RIPESI-IQLFVLRYLLLSYSERIQS-VS--------LPLARGILEDTQRSP 302 (321)
Q Consensus 253 ~l~~n~l~-----~l~~~l-~~l~~L~~L~l~~n~~l~~-~~--------~~~~l~~l~~~~~~~ 302 (321)
+++.|.++ .+-..+ ...|.|+.|.+.+| .++. -- --+.+..|.+.++..
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999987 222333 34789999999999 4422 11 124556666666544
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=2.7e-08 Score=96.08 Aligned_cols=105 Identities=32% Similarity=0.407 Sum_probs=59.7
Q ss_pred ccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEecccccc-ccChhhhccCCCCeEecccCc
Q 037308 132 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE-ELPSSIERLLRLGHLDLSDCK 210 (321)
Q Consensus 132 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~ 210 (321)
++.|+|++|.+.+.+|..++.+++|+.|++++ |.+. .+|..+..+++|+.|++++|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~----------------------N~l~g~iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG----------------------NSIRGNIPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCC----------------------CcccCcCChHHhCCCCCCEEECCCCC
Confidence 44555555555555555555555555555555 4444 245455666666666666666
Q ss_pred ccccccccccCCCCCCEEEecCCCCCCccccccCCC-CCCcEEEcccCC
Q 037308 211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL-SSPIILNLAKTN 258 (321)
Q Consensus 211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~ 258 (321)
+.+.+|..++.+++|+.|++++|++.+.+|..+... .++..+++.+|.
T Consensus 478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 666666666666666666666666666666555432 344555665554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.2e-08 Score=67.11 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=26.2
Q ss_pred CccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308 177 NINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC 233 (321)
Q Consensus 177 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 233 (321)
+|++|++++|.++.+|. .+.++++|++|++++|.+....+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555554444442 3444444444444444444333344444444444444443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.6e-09 Score=99.80 Aligned_cols=214 Identities=21% Similarity=0.227 Sum_probs=124.5
Q ss_pred CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cCCcCceeEEeccCCcccccccCCCCCCCh
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NLSAEKLVFLKVPYSDIEQLWNGEKHYSNL 105 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L 105 (321)
+..++.+.+..|.+. .....+.. .+|..+++.+|.+..+.. .-.+++|++|++++|.|.++ .++..++.|
T Consensus 71 l~~l~~l~l~~n~i~-------~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-------KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhh-------hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccch
Confidence 345555556555422 11222344 788888888888888877 44788888888888888875 455667778
Q ss_pred HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc-ccCcccCcEEecCCCCCcccccccccCCccEEEec
Q 037308 106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG-IFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLR 184 (321)
Q Consensus 106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 184 (321)
.. |++.+|.++ .+. .+..+..|+.+++++|.+. .+... ...+.+++.+.+..|.....-.......+..+++.
T Consensus 143 ~~-L~l~~N~i~-~~~---~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 143 KE-LNLSGNLIS-DIS---GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLL 216 (414)
T ss_pred hh-heeccCcch-hcc---CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcc
Confidence 77 888888887 665 4666888888888888743 33321 35677787777777554332222123444445566
Q ss_pred cccccccChhhhccC--CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308 185 ETAIEELPSSIERLL--RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV 259 (321)
Q Consensus 185 ~~~i~~l~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (321)
.|.++.+.. +..+. .|+.+++.+|.+.. .+..+..+..+..|++..+.+... ..+...+.+..+....+.+
T Consensus 217 ~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 217 DNKISKLEG-LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cccceeccC-cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 666554432 11122 26666666665332 223344556666666665544332 1223333444444444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=2e-08 Score=66.07 Aligned_cols=61 Identities=28% Similarity=0.352 Sum_probs=53.9
Q ss_pred CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308 199 LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV 259 (321)
Q Consensus 199 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (321)
++|++|++++|++....+..+.++++|+.|++++|.+...-+.+|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999988877777899999999999999888777777899999999999999975
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-09 Score=100.80 Aligned_cols=211 Identities=24% Similarity=0.198 Sum_probs=130.8
Q ss_pred CcccEEEecCCCCCCCCC-cCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPS-NLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
..++.+.+..+.+..+.. ...+.+++.+++.+|.|..+......+++|.. ++++.|.|+ .+. .+..+..|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~-L~ls~N~I~-~i~---~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQV-LDLSFNKIT-KLE---GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchh-eeccccccc-ccc---chhhccchhhhe
Confidence 556666677776666434 23678888888888888876554677788888 888888887 665 466667788888
Q ss_pred ccCCCCCcccCccccCcccCcEEecCCCCCccccc--ccccCCccEEEeccccccccChhhhccCCCCeEecccCccccc
Q 037308 137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL--EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKS 214 (321)
Q Consensus 137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~ 214 (321)
+++|. +..+.. +..+++|+.++++.|.....-+ .....+++.+++.+|.+..+.. +..+..+..+++..|.+...
T Consensus 147 l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCc-chhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceec
Confidence 88887 444443 5557788888888765433333 1346677777787777776542 33333444445666554432
Q ss_pred ccccccCCCC--CCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCC
Q 037308 215 LPSSLFKLKS--LGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 215 ~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 280 (321)
-+ +..+.. |+.+++.+|.+.. .++.+..+..+..|++..|++..+. .+...+.+..+....+
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN 287 (414)
T ss_pred cC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence 11 222333 6777777765433 2245566777888888888776443 2333444444555555
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.8e-08 Score=99.72 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=89.3
Q ss_pred CCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCC--CCCCCCcC--CcCceeEEeccCCc-ccccccCCCCC
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYP--LKSLPSNL--SAEKLVFLKVPYSD-IEQLWNGEKHY 102 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~--l~~~~~~~--~l~~L~~L~l~~~~-l~~~~~~~~~l 102 (321)
....++..+.+|.+ ...+....+++|+.|-+.++. +..++..+ .++.|+.||+++|. +..+|...+.+
T Consensus 522 ~~~~rr~s~~~~~~-------~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKI-------EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hhheeEEEEeccch-------hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 35667777777641 233334444678888887775 56666643 68888888888654 56777777888
Q ss_pred CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCC
Q 037308 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC 164 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~ 164 (321)
-+|+. |++++..++ .+|. .+..+.+|.+|++..+.....+|.....+++|++|.+..-
T Consensus 595 i~Lry-L~L~~t~I~-~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 595 VHLRY-LDLSDTGIS-HLPS--GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhc-ccccCCCcc-ccch--HHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 88887 888888888 8877 7888888888888877655555665555888888877653
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-08 Score=101.16 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=48.5
Q ss_pred CcccEEEecCCC-CCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308 58 AEVKYFHWHGYP-LKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL 135 (321)
Q Consensus 58 ~~L~~l~l~~~~-l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L 135 (321)
+.|+.||+++|. +..+|..+ .+-+|++|++++..+..+|.++..+..|.+ |++..+.....++. ....+++|++|
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~-Lnl~~~~~l~~~~~--i~~~L~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY-LNLEVTGRLESIPG--ILLELQSLRVL 647 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe-eccccccccccccc--hhhhcccccEE
Confidence 667777776553 55666665 466667777777777666666666666666 66654443313332 44456666666
Q ss_pred EccCC
Q 037308 136 NLRGS 140 (321)
Q Consensus 136 ~l~~n 140 (321)
.+...
T Consensus 648 ~l~~s 652 (889)
T KOG4658|consen 648 RLPRS 652 (889)
T ss_pred Eeecc
Confidence 66553
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=7.2e-07 Score=80.20 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccc-cccccChhhhccCCCCeEecc
Q 037308 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRET-AIEELPSSIERLLRLGHLDLS 207 (321)
Q Consensus 129 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~ 207 (321)
+.+++.|++++|. +..+|. -..+|+.|++++|..+..+|...+++|+.|++++| .+..+|. +|+.|++.
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeC
Confidence 4556666666664 444452 12356666666666665555444556666666665 4444443 35555554
Q ss_pred c
Q 037308 208 D 208 (321)
Q Consensus 208 ~ 208 (321)
.
T Consensus 121 ~ 121 (426)
T PRK15386 121 G 121 (426)
T ss_pred C
Confidence 4
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.7e-09 Score=88.58 Aligned_cols=82 Identities=23% Similarity=0.165 Sum_probs=36.2
Q ss_pred eeEEeccCCcccc--cccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC--ccccCcccCc
Q 037308 82 LVFLKVPYSDIEQ--LWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP--SGIFNLEFLT 157 (321)
Q Consensus 82 L~~L~l~~~~l~~--~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~ 157 (321)
|+++|++...|+. +..-+..+.+|+. +.+.++.+.+.+.. .++.-..|+.|+++++.-.++.. -.++.|++|.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~-lSlEg~~LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKN-LSLEGLRLDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhh-ccccccccCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 5555555544432 1122233333444 44444444422222 34455555666665554222211 1244555666
Q ss_pred EEecCCCCC
Q 037308 158 KLDLSGCSK 166 (321)
Q Consensus 158 ~L~l~~~~~ 166 (321)
.|++++|..
T Consensus 264 ~LNlsWc~l 272 (419)
T KOG2120|consen 264 ELNLSWCFL 272 (419)
T ss_pred hcCchHhhc
Confidence 666665543
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=7.7e-08 Score=80.37 Aligned_cols=254 Identities=16% Similarity=0.114 Sum_probs=154.0
Q ss_pred eEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC----CCC----
Q 037308 5 IEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS----LPS---- 75 (321)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~----~~~---- 75 (321)
|.+..+.+..-+++-.....+..+..+..++|++|.+......+ ....++. .+|+..+++.-.... ++.
T Consensus 6 I~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~--l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 6 IGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEE--LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred cCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHH--HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH
Confidence 44444444444443333344555788999999999865443322 2233445 777777776543322 221
Q ss_pred ----cCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCC--CCCCCCCCccEEEccCCCCCcccCc-
Q 037308 76 ----NLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNP--TLMPHLNKLVILNLRGSKSLKSLPS- 148 (321)
Q Consensus 76 ----~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~- 148 (321)
..++|+|+..++|+|.+.. +.|.+ ..+.+-..|++|.+++|. .+.+..
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~------------------------~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~ 138 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGS------------------------EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGG 138 (388)
T ss_pred HHHHHhcCCcceeeeccccccCc------------------------ccchHHHHHHhcCCCceeEEeecCC-CCccchh
Confidence 1267777777777777652 11110 134556778888888887 333221
Q ss_pred cc-------------cCcccCcEEecCCCCCccccccc------ccCCccEEEeccccccc--cC----hhhhccCCCCe
Q 037308 149 GI-------------FNLEFLTKLDLSGCSKLKRLLEI------SSGNINWLFLRETAIEE--LP----SSIERLLRLGH 203 (321)
Q Consensus 149 ~l-------------~~l~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~i~~--l~----~~~~~l~~L~~ 203 (321)
-+ ..-+.|+.++..+|......... ...+|+.+.+.+|+|+. +. .++..+.+|+.
T Consensus 139 rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~Lev 218 (388)
T COG5238 139 RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEV 218 (388)
T ss_pred HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCccee
Confidence 11 23467888888887643221110 23579999999999984 22 23567789999
Q ss_pred EecccCccccc----ccccccCCCCCCEEEecCCCCCCcccccc------CCCCCCcEEEcccCCCc-------ccchhh
Q 037308 204 LDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQRLPECL------GQLSSPIILNLAKTNVE-------RIPESI 266 (321)
Q Consensus 204 L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~n~l~-------~l~~~l 266 (321)
||+.+|.++-. +...+..|+.|+.|++.+|-+......++ ...++|+.|....|... .++...
T Consensus 219 LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred eeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence 99999887642 33456788889999999997765432211 13577888888877643 233221
Q ss_pred -hccCCcCEEeccCCCCcccc
Q 037308 267 -IQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 267 -~~l~~L~~L~l~~n~~l~~~ 286 (321)
..+|-|..+.+.|| ++++.
T Consensus 299 ~~~~p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 299 QDAVPLLVDLERNGN-RIKEL 318 (388)
T ss_pred hcccHHHHHHHHccC-cchhH
Confidence 45777888888888 66554
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.7e-06 Score=77.81 Aligned_cols=129 Identities=20% Similarity=0.334 Sum_probs=76.0
Q ss_pred cCcccCcEEecCCCCCcccccccccCCccEEEecc-ccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308 151 FNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRE-TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229 (321)
Q Consensus 151 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 229 (321)
..+.+++.|++++| .+..+|.. +++|+.|.+++ +.++.+|..+ .++|++|++++|.....+|. +|+.|+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPVL-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCCC-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 34688999999998 67777754 77899999987 4555677544 35899999998854444553 466666
Q ss_pred ecCCCC--CCccccccCCCCCCcEEEcccCC-Cc--ccchhhhcc-CCcCEEeccCCCCccccc--Cccccccccccc
Q 037308 230 LGGCSN--LQRLPECLGQLSSPIILNLAKTN-VE--RIPESIIQL-FVLRYLLLSYSERIQSVS--LPLARGILEDTQ 299 (321)
Q Consensus 230 l~~~~~--~~~~~~~~~~~~~L~~L~l~~n~-l~--~l~~~l~~l-~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~ 299 (321)
+..+.. ...+|. +|+.|.+.+++ .. .+|. .+ ++|++|++.+|..+ .+| +|.+++.|++..
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccccccCcEEEecc
Confidence 654322 333443 34455543221 11 1111 12 35666666666433 233 556666665543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.8e-08 Score=85.13 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=89.3
Q ss_pred CccEEEccCCCCCc-ccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc-cccccC--hhhhccCCCCeE
Q 037308 131 KLVILNLRGSKSLK-SLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET-AIEELP--SSIERLLRLGHL 204 (321)
Q Consensus 131 ~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~-~i~~l~--~~~~~l~~L~~L 204 (321)
.|++||+++..+.. .+...++.|.+|+.|.+.++.....+... ...+|..|+++.+ ++++.. .-+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777777655432 23334556666666666664433322211 2456666666554 344322 235666777777
Q ss_pred ecccCccccccccc-cc-CCCCCCEEEecCCCCC---CccccccCCCCCCcEEEcccC-CCc-ccchhhhccCCcCEEec
Q 037308 205 DLSDCKRLKSLPSS-LF-KLKSLGVLNLGGCSNL---QRLPECLGQLSSPIILNLAKT-NVE-RIPESIIQLFVLRYLLL 277 (321)
Q Consensus 205 ~l~~n~~~~~~~~~-~~-~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n-~l~-~l~~~l~~l~~L~~L~l 277 (321)
++++|......-.+ +. --++|..|+++++... ..+..-...+++|.+||++.| .++ .+-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77776654422111 11 1245666666665211 122223345667777777665 334 33345566667777777
Q ss_pred cCCCCccc-----ccCccccccccccccCcc
Q 037308 278 SYSERIQS-----VSLPLARGILEDTQRSPH 303 (321)
Q Consensus 278 ~~n~~l~~-----~~~~~~l~~l~~~~~~~~ 303 (321)
+.|-.+-. +.--+++.+|++-+|-+.
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 76644311 112345666666665554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=2.2e-08 Score=93.72 Aligned_cols=120 Identities=31% Similarity=0.279 Sum_probs=56.3
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET 186 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 186 (321)
.++++|.++ .+.. .+.-++.+++|+|+.|.+.... .+..++.|++||++.|. +..+|.. .-..|+.|.+++|
T Consensus 169 a~fsyN~L~-~mD~--SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDE--SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhcchhhHH-hHHH--HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence 455555555 4433 4555555566666655533322 24455555566655532 3333322 1223555555555
Q ss_pred cccccChhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCC
Q 037308 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSN 235 (321)
Q Consensus 187 ~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~ 235 (321)
.++.+- ++.++.+|+.||+++|-+.+.-. .-+..+..|+.|.+.+|++
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555443 24455555555555544333211 1122334444555555433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=2.1e-06 Score=52.09 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=25.9
Q ss_pred CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 247 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
++|+.|++++|+++++|..++.+++|+.|++++| .+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3567777777777777766777777777777777 566543
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=8.9e-07 Score=85.78 Aligned_cols=151 Identities=25% Similarity=0.237 Sum_probs=105.4
Q ss_pred CCCccEEEccCCCCC-cccCccc-cCcccCcEEecCCCCCcc-ccccc--ccCCccEEEeccccccccChhhhccCCCCe
Q 037308 129 LNKLVILNLRGSKSL-KSLPSGI-FNLEFLTKLDLSGCSKLK-RLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGH 203 (321)
Q Consensus 129 l~~L~~L~l~~n~~~-~~~p~~l-~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 203 (321)
-.+|++|++++.... ...|..+ ..+|+|+.|.+.+-.... .+... .+++|..||++++.++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 368999999886532 2233222 348999999988733221 11111 599999999999999998 56889999999
Q ss_pred EecccCcccc-cccccccCCCCCCEEEecCCCCCCcc--c----cccCCCCCCcEEEcccCCCc-c-cchhhhccCCcCE
Q 037308 204 LDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRL--P----ECLGQLSSPIILNLAKTNVE-R-IPESIIQLFVLRY 274 (321)
Q Consensus 204 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~~n~l~-~-l~~~l~~l~~L~~ 274 (321)
|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..+|.||.||.|++.+. . +...+...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888755443 11235779999999999975443321 1 23345899999999999988 3 3345577889988
Q ss_pred EeccCC
Q 037308 275 LLLSYS 280 (321)
Q Consensus 275 L~l~~n 280 (321)
+.+-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 877665
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=6.1e-08 Score=90.88 Aligned_cols=121 Identities=19% Similarity=0.114 Sum_probs=54.2
Q ss_pred eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc-ccCcccCcEEec
Q 037308 83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG-IFNLEFLTKLDL 161 (321)
Q Consensus 83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l 161 (321)
...+.++|++..+...+.-++.++. |++++|++. .+. .+..+++|++|||++|. +..+|.. ..++. |..|++
T Consensus 167 ~~a~fsyN~L~~mD~SLqll~ale~-LnLshNk~~-~v~---~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 167 ATASFSYNRLVLMDESLQLLPALES-LNLSHNKFT-KVD---NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhhcchhhHHhHHHHHHHHHHhhh-hccchhhhh-hhH---HHHhcccccccccccch-hccccccchhhhh-heeeee
Confidence 3334444444444444444444555 555555555 333 34555555555555554 3333321 11222 555555
Q ss_pred CCCCCcccccccccCCccEEEeccccccccCh--hhhccCCCCeEecccCc
Q 037308 162 SGCSKLKRLLEISSGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCK 210 (321)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~ 210 (321)
.+|...+-..-..+.+|+.||++.|-+.+... -++.+..|++|.+.+|.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 55432221111124455555555555554321 13444455555555554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=9.8e-07 Score=66.45 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccC
Q 037308 200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279 (321)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 279 (321)
.|+..++++|.+....+..-..++..+.+++.+|. ...+|+.+..++.|+.|+++.|.+...|..+..+.++.+|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 33444444444332222222233344444444422 23344445555555555555555554444444444444454444
Q ss_pred CCCccccc
Q 037308 280 SERIQSVS 287 (321)
Q Consensus 280 n~~l~~~~ 287 (321)
| .+..++
T Consensus 133 n-a~~eid 139 (177)
T KOG4579|consen 133 N-ARAEID 139 (177)
T ss_pred C-ccccCc
Confidence 4 443333
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.1e-05 Score=47.69 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=23.2
Q ss_pred CccEEEeccccccccChhhhccCCCCeEecccCccc
Q 037308 177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRL 212 (321)
Q Consensus 177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~ 212 (321)
+|++|++++|.++++|..+.++++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 566677777777777666667777777777776654
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=2.6e-06 Score=72.32 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=41.9
Q ss_pred cCCccEEEeccccccccC--hhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccc------cccCC
Q 037308 175 SGNINWLFLRETAIEELP--SSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLP------ECLGQ 245 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~ 245 (321)
++++..+.+..|.+.... .+....+.+-.|+++.+++.+ ..-+.+.+++.|+.|.++++++...+. --++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 556666666666555433 233444555566666655432 222345666667777766665543221 12345
Q ss_pred CCCCcEEE
Q 037308 246 LSSPIILN 253 (321)
Q Consensus 246 ~~~L~~L~ 253 (321)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 56666654
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=2.8e-05 Score=65.36 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=8.1
Q ss_pred CChHhHHhhcccccc
Q 037308 103 SNLNQIINATCNKLI 117 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~ 117 (321)
..+.+ +++++|.|.
T Consensus 30 d~~~e-vdLSGNtig 43 (388)
T COG5238 30 DELVE-VDLSGNTIG 43 (388)
T ss_pred cceeE-EeccCCccc
Confidence 33444 666766665
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=5.6e-05 Score=60.85 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=63.5
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
.....+|+.+|.+..++..-.++.|.+|.+.+|+|+.+...+ ..+|++.. |.+..|.+. ++.....+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~-L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT-LILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccce-EEecCcchh-hhhhcchhccCCccceee
Confidence 556677777777776666557778888888888887765544 34455666 667666666 444333456667777777
Q ss_pred ccCCCCCcccC---ccccCcccCcEEecCC
Q 037308 137 LRGSKSLKSLP---SGIFNLEFLTKLDLSG 163 (321)
Q Consensus 137 l~~n~~~~~~p---~~l~~l~~L~~L~l~~ 163 (321)
+-+|.....-- -.+.++++|++||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 76665322110 1234556666666654
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.60 E-value=1.6e-06 Score=76.58 Aligned_cols=257 Identities=17% Similarity=0.200 Sum_probs=143.0
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCC-Cc-CcccEEEecCCC-CCCCCCc--C-CcCceeEEeccCCc-ccc-
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDP-RF-AEVKYFHWHGYP-LKSLPSN--L-SAEKLVFLKVPYSD-IEQ- 94 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~-~~L~~l~l~~~~-l~~~~~~--~-~l~~L~~L~l~~~~-l~~- 94 (321)
.....+|++++|.+.++.. ........+ ++ ++|+++++..|. ++...-. . ++++|++++++.|. +++
T Consensus 158 t~~~~CpnIehL~l~gc~~-----iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~ 232 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKK-----ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN 232 (483)
T ss_pred HHhhhCCchhhhhhhccee-----ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC
Confidence 3455688998888877640 111111222 23 888888888754 3322111 1 68888888888764 332
Q ss_pred -cccCCCCCCChHhHHhh-cccccccc-CCCCCCCCCCCCccEEEccCCCCCcccC--ccccCcccCcEEecCCCCCccc
Q 037308 95 -LWNGEKHYSNLNQIINA-TCNKLIAK-TPNPTLMPHLNKLVILNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKR 169 (321)
Q Consensus 95 -~~~~~~~l~~L~~~l~l-~~~~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~ 169 (321)
+.........++. +.. +|-....+ +.- .-.++..+.++++..|..++... ..-..+.+|+.++.+.|..++.
T Consensus 233 gv~~~~rG~~~l~~-~~~kGC~e~~le~l~~--~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 233 GVQALQRGCKELEK-LSLKGCLELELEALLK--AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred cchHHhccchhhhh-hhhcccccccHHHHHH--HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 0011111222333 222 11111100 000 11234445555555554332211 1112456666776666665443
Q ss_pred cccc----ccCCccEEEecccc-ccc--cChhhhccCCCCeEecccCccccc--ccccccCCCCCCEEEecCCCCCCcc-
Q 037308 170 LLEI----SSGNINWLFLRETA-IEE--LPSSIERLLRLGHLDLSDCKRLKS--LPSSLFKLKSLGVLNLGGCSNLQRL- 239 (321)
Q Consensus 170 ~~~~----~~~~L~~L~l~~~~-i~~--l~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~- 239 (321)
.+-. ...+|++|-+..+. +++ +...-.+.+.|+.+++..+....+ +...-.+++.|+.+.+++|..++.-
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 3322 35667777666553 222 222234567888888888775543 2233347889999999988665432
Q ss_pred ----ccccCCCCCCcEEEcccCCCc--ccchhhhccCCcCEEeccCCCCccccc
Q 037308 240 ----PECLGQLSSPIILNLAKTNVE--RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 240 ----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
...-+.+..|+.+-++++.++ ...+.+..+++|+.+++-+|..+.+-+
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 234456788999999999876 444677889999999999998776544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=9.9e-05 Score=59.44 Aligned_cols=51 Identities=31% Similarity=0.266 Sum_probs=23.0
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 163 (321)
+++++|++. ..+ .|.+++.|..|.+.+|++....|.--..++.|+.|.+.+
T Consensus 47 iDLtdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 47 IDLTDNDLR-KLD---NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ecccccchh-hcc---cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 444444444 333 344555555555555554443343222334444444444
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=7.8e-05 Score=72.53 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=87.1
Q ss_pred cccCcEEecCCCCCccc-----ccccccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCC
Q 037308 153 LEFLTKLDLSGCSKLKR-----LLEISSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSL 225 (321)
Q Consensus 153 l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 225 (321)
-.+|++|++++...... +.. .+|+|+.|.+.+-.+.. +..-..+.++|..||++++++... ..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 35888999988444321 111 58999999998865543 444456778999999999886654 567889999
Q ss_pred CEEEecCCCCCC-ccccccCCCCCCcEEEcccCCCcccc---h----hhhccCCcCEEeccCC
Q 037308 226 GVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVERIP---E----SIIQLFVLRYLLLSYS 280 (321)
Q Consensus 226 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~l~---~----~l~~l~~L~~L~l~~n 280 (321)
+.|.+.+-.+.. ..-..+-.+++|+.||+|..+-..-+ . +-..+|+|+.|+.++.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 999887644443 11124556899999999997655322 2 2235889999999986
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=2.8e-05 Score=66.17 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=97.0
Q ss_pred cccEEEecCCCCCCCCCcC----CcCceeEEeccCCcccc---cccCCCCCCChHhHHhhccccccccCCCCCCC-CCCC
Q 037308 59 EVKYFHWHGYPLKSLPSNL----SAEKLVFLKVPYSDIEQ---LWNGEKHYSNLNQIINATCNKLIAKTPNPTLM-PHLN 130 (321)
Q Consensus 59 ~L~~l~l~~~~l~~~~~~~----~l~~L~~L~l~~~~l~~---~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~-~~l~ 130 (321)
-+..+.+.++.+....... ..++++.+++.+|.|++ +..-+..+|.++. +++++|.+...+. .+ .-..
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~-LNls~N~L~s~I~---~lp~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTT-LNLSCNSLSSDIK---SLPLPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceE-eeccCCcCCCccc---cCccccc
Confidence 3445556666666554432 57777888888887765 2233456677777 7777776652221 22 2345
Q ss_pred CccEEEccCCCCCcc-cCccccCcccCcEEecCCCCCcc------cccccccCCccEEEeccccccccC---hhhhccCC
Q 037308 131 KLVILNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKLK------RLLEISSGNINWLFLRETAIEELP---SSIERLLR 200 (321)
Q Consensus 131 ~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~l~~ 200 (321)
+|+.|.+.+..+... ....+..++.++.|+++.|.... ...++ .+.+++|+...|...... .--...++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 677777766543221 12234456666666666642111 11111 223444444444333211 11122345
Q ss_pred CCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCc
Q 037308 201 LGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 201 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+..+.+..|.+.+... .....++.+..|.++.+++..- --+.+.++++|+.|.++++.+.
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555555554433222 2233444555555555444321 1134556666666666666554
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=1.6e-05 Score=60.04 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=46.2
Q ss_pred cEEEecCCCCCCCCCc----CCcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308 61 KYFHWHGYPLKSLPSN----LSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL 135 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~----~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L 135 (321)
-.++++.|++-.+++. +...+|+..++++|.+++++..+ ..+|.++. ++++.|.++ .+|. .+..++.|+.|
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~-lNl~~neis-dvPe--E~Aam~aLr~l 105 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATT-LNLANNEIS-DVPE--ELAAMPALRSL 105 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhh-hhcchhhhh-hchH--HHhhhHHhhhc
Confidence 3444444444433332 13444555555555555544332 23334444 555555555 5554 45555555555
Q ss_pred EccCCCCCcccCccccCcccCcEEecCC
Q 037308 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (321)
Q Consensus 136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 163 (321)
+++.|. ....|..+..+.++.+|+...
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 555555 223333333445555555444
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=3e-06 Score=75.00 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=69.2
Q ss_pred cCCccEEEecccc-ccccCh-h-hhccCCCCeEecccCccccccc--ccccCCCCCCEEEecCCCCCC--ccccccCCCC
Q 037308 175 SGNINWLFLRETA-IEELPS-S-IERLLRLGHLDLSDCKRLKSLP--SSLFKLKSLGVLNLGGCSNLQ--RLPECLGQLS 247 (321)
Q Consensus 175 ~~~L~~L~l~~~~-i~~l~~-~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~ 247 (321)
+..|++|+.+++. +++.+- . ..+..+|+.+.+.+|...++.- ..-.+++.|+.+++.+|.... ++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455666665542 222221 1 2344566666666665433211 112255666666666654332 2223334566
Q ss_pred CCcEEEcccCCCc-cc-----chhhhccCCcCEEeccCCCCccccc-----CccccccccccccCccchhhHHH
Q 037308 248 SPIILNLAKTNVE-RI-----PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPHMDHKLAV 310 (321)
Q Consensus 248 ~L~~L~l~~n~l~-~l-----~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~~~~~l~~ 310 (321)
.||.|.++.|... +- ...-..+..|..+.+.+|+.+.+-- .=++++..+.++|+....+.+..
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 7777777766433 11 2222345566777777776664432 22466777777766665554443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00032 Score=58.70 Aligned_cols=62 Identities=32% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCCCCeEecccC--cccccccccccCCCCCCEEEecCCCCC--CccccccCCCCCCcEEEcccCCCc
Q 037308 198 LLRLGHLDLSDC--KRLKSLPSSLFKLKSLGVLNLGGCSNL--QRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 198 l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+++|++|.++.| .+.+.++-....+++|+++++++|.+. .++ ..+..+.+|..|++.+|..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence 344455555544 222222222223344555555444332 111 12233344445555555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00017 Score=60.95 Aligned_cols=84 Identities=23% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch--hhhccCCcCEEec
Q 037308 200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE--SIIQLFVLRYLLL 277 (321)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l 277 (321)
+.++|+.-+|.+.+. .....|+.|+.|.|+-|.+.+. ..+..++.|++|+|..|.|.++.+ -+.++|+|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445555555543332 2234666777777776665554 345667777777777777776654 4567788888888
Q ss_pred cCCCCccccc
Q 037308 278 SYSERIQSVS 287 (321)
Q Consensus 278 ~~n~~l~~~~ 287 (321)
..|+-..+-+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 8777665544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0018 Score=54.40 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=69.2
Q ss_pred CCCeEecccCcccccccccccCCCCCCEEEecCC--CCCCccccccCCCCCCcEEEcccCCCcccc--hhhhccCCcCEE
Q 037308 200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC--SNLQRLPECLGQLSSPIILNLAKTNVERIP--ESIIQLFVLRYL 275 (321)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L 275 (321)
.|+.+++.+..++.. ..+..+++|++|.++.| ...+.++.....+++|+.+++++|+++.+. ..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 455555555443322 23557889999999999 666666666667799999999999998433 356778899999
Q ss_pred eccCCCCccccc--------CccccccccccccCc
Q 037308 276 LLSYSERIQSVS--------LPLARGILEDTQRSP 302 (321)
Q Consensus 276 ~l~~n~~l~~~~--------~~~~l~~l~~~~~~~ 302 (321)
++..|+-.. +. +.+++.+|+-..+..
T Consensus 122 dl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 122 DLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 999995443 32 556677776665443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.49 E-value=0.011 Score=44.75 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=17.2
Q ss_pred CCCCCCCccEEEccCCCCCccc-CccccCcccCcEEecCC
Q 037308 125 LMPHLNKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSG 163 (321)
Q Consensus 125 ~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~ 163 (321)
.|.++.+|+.+.+.. . ...+ ...|..+++|+.+++..
T Consensus 7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccc
Confidence 466666777777764 2 2233 23455666666666654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00022 Score=60.36 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=66.0
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
.+.+.|++-||.+..|.--..|+.|+.|.|+-|.|+++ ..+..+.+|++ +++..|.|. .+...+.+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkE-lYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKE-LYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHH-HHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 44566777777776664334788888888888888774 44567777888 888878777 5554345677788888888
Q ss_pred cCCCCCcccCc-----cccCcccCcEEe
Q 037308 138 RGSKSLKSLPS-----GIFNLEFLTKLD 160 (321)
Q Consensus 138 ~~n~~~~~~p~-----~l~~l~~L~~L~ 160 (321)
..|.-.+.-+. .+..+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 87765444332 133456666664
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.19 E-value=0.029 Score=42.33 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=47.4
Q ss_pred ccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCC
Q 037308 150 IFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSL 225 (321)
Q Consensus 150 l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 225 (321)
|.++++|+.+.+.. ....++.. .+.+|+.+.+..+ +..++. .+.++++++.+.+.. .........+..++++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 55566666666653 12222222 3446777776653 565553 355555677777754 3333333455567777
Q ss_pred CEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCc
Q 037308 226 GVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVL 272 (321)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L 272 (321)
+.+++..+ ....-...+.++ .++.+.+.. .++.++ ..+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777552 322223455555 677776654 344444 344555544
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.0029 Score=59.37 Aligned_cols=88 Identities=31% Similarity=0.367 Sum_probs=45.8
Q ss_pred CCCCCCCccEEEccCC-CCCcccC----ccccCcccCcEEecCCCCCccccc--cc--ccCCccEEEecccc-ccc--cC
Q 037308 125 LMPHLNKLVILNLRGS-KSLKSLP----SGIFNLEFLTKLDLSGCSKLKRLL--EI--SSGNINWLFLRETA-IEE--LP 192 (321)
Q Consensus 125 ~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~--~~--~~~~L~~L~l~~~~-i~~--l~ 192 (321)
....++.|+.|+++++ ......+ .....+.+|++++++.+..++... .. .+++|+.|.+..+. +++ +.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3455667777777652 1111111 123345667777777665333211 11 25567777766555 443 22
Q ss_pred hhhhccCCCCeEecccCccc
Q 037308 193 SSIERLLRLGHLDLSDCKRL 212 (321)
Q Consensus 193 ~~~~~l~~L~~L~l~~n~~~ 212 (321)
.....++.|++|++++|...
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhcCcccEEeeecCccc
Confidence 33455666777777766554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0039 Score=31.44 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=9.4
Q ss_pred CcEEEcccCCCcccchhh
Q 037308 249 PIILNLAKTNVERIPESI 266 (321)
Q Consensus 249 L~~L~l~~n~l~~l~~~l 266 (321)
|+.||+++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555433
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.39 E-value=0.01 Score=27.77 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=5.8
Q ss_pred CCcEEEcccCCCccc
Q 037308 248 SPIILNLAKTNVERI 262 (321)
Q Consensus 248 ~L~~L~l~~n~l~~l 262 (321)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555554444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.31 E-value=0.0085 Score=30.17 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=9.3
Q ss_pred ccEEEeccccccccChhh
Q 037308 178 INWLFLRETAIEELPSSI 195 (321)
Q Consensus 178 L~~L~l~~~~i~~l~~~~ 195 (321)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.81 E-value=0.031 Score=52.36 Aligned_cols=129 Identities=28% Similarity=0.270 Sum_probs=69.8
Q ss_pred CcccCcEEecCCCCCccc--cccc--ccCCccEEEeccc--cccccC----hhhhccCCCCeEecccCc-cccccccccc
Q 037308 152 NLEFLTKLDLSGCSKLKR--LLEI--SSGNINWLFLRET--AIEELP----SSIERLLRLGHLDLSDCK-RLKSLPSSLF 220 (321)
Q Consensus 152 ~l~~L~~L~l~~~~~~~~--~~~~--~~~~L~~L~l~~~--~i~~l~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~ 220 (321)
.++.|+.+.+..|..+.. +... ..+.|+.|+++++ .+...+ .....+..|+.++++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777777665553 2121 4667777777752 111111 123344677777777766 3332222222
Q ss_pred -CCCCCCEEEecCCCC-CCc-cccccCCCCCCcEEEcccCCCc---ccchhhhccCCcCEEeccCC
Q 037308 221 -KLKSLGVLNLGGCSN-LQR-LPECLGQLSSPIILNLAKTNVE---RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 221 -~l~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n 280 (321)
.+++|+.|.+..|.. ... +......++.|+.|+++.|... .+......+++++.+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 367777777776653 222 2233445677888888777543 23333445666655544433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.018 Score=46.70 Aligned_cols=80 Identities=25% Similarity=0.244 Sum_probs=42.6
Q ss_pred CCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccC-CCCCCcEEEcccC-CCcccc-hhhhccCCcCEEe
Q 037308 201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLG-QLSSPIILNLAKT-NVERIP-ESIIQLFVLRYLL 276 (321)
Q Consensus 201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~ 276 (321)
++.+|-+++.+....-+.+..+++++.|.+..|.-...- -+.++ ..++|+.|++++| +|++-- .++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555544444444555556666666655443321 01111 3466777777765 566322 4666677777776
Q ss_pred ccCC
Q 037308 277 LSYS 280 (321)
Q Consensus 277 l~~n 280 (321)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.92 E-value=0.16 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.3
Q ss_pred CCCCcEEEcccCCCcccchhh
Q 037308 246 LSSPIILNLAKTNVERIPESI 266 (321)
Q Consensus 246 ~~~L~~L~l~~n~l~~l~~~l 266 (321)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888877543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.92 E-value=0.16 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.3
Q ss_pred CCCCcEEEcccCCCcccchhh
Q 037308 246 LSSPIILNLAKTNVERIPESI 266 (321)
Q Consensus 246 ~~~L~~L~l~~n~l~~l~~~l 266 (321)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888877543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.39 E-value=0.0023 Score=59.84 Aligned_cols=178 Identities=23% Similarity=0.184 Sum_probs=85.9
Q ss_pred eeEEeccCCcccc-----cccCCCCCCChHhHHhhccccccccCCC--CCCCCCC-CCccEEEccCCCCCc----ccCcc
Q 037308 82 LVFLKVPYSDIEQ-----LWNGEKHYSNLNQIINATCNKLIAKTPN--PTLMPHL-NKLVILNLRGSKSLK----SLPSG 149 (321)
Q Consensus 82 L~~L~l~~~~l~~-----~~~~~~~l~~L~~~l~l~~~~l~~~~~~--~~~~~~l-~~L~~L~l~~n~~~~----~~p~~ 149 (321)
+..+.+.+|.+.. +..++...+.+.. ++++.|.+.+.... ...+... ..++.|.+..|.+.. .+++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~-L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQ-LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhH-hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 4445555554433 2233344455555 55555555411100 0012222 344555555554332 12333
Q ss_pred ccCcccCcEEecCCCCCccc--------ccc--cccCCccEEEeccccccc-----cChhhhccCC-CCeEecccCcccc
Q 037308 150 IFNLEFLTKLDLSGCSKLKR--------LLE--ISSGNINWLFLRETAIEE-----LPSSIERLLR-LGHLDLSDCKRLK 213 (321)
Q Consensus 150 l~~l~~L~~L~l~~~~~~~~--------~~~--~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~-L~~L~l~~n~~~~ 213 (321)
+.....++.++++.|..... ++. ....+++.|++..|.++. +...+...+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44455555556555543210 111 024456666666666653 1222334444 5567777766543
Q ss_pred c----ccccccCC-CCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc
Q 037308 214 S----LPSSLFKL-KSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 214 ~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
. ....+..+ ..++.++++.|.+... +.+.+..+++++.+.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 22334444 5667777777766543 3344555667777777777765
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.58 E-value=0.0077 Score=56.32 Aligned_cols=175 Identities=25% Similarity=0.281 Sum_probs=104.9
Q ss_pred hHhHHhhcccccccc----CCCCCCCCCCCCccEEEccCCCCCcc----cCccccCc-ccCcEEecCCCCCccccc----
Q 037308 105 LNQIINATCNKLIAK----TPNPTLMPHLNKLVILNLRGSKSLKS----LPSGIFNL-EFLTKLDLSGCSKLKRLL---- 171 (321)
Q Consensus 105 L~~~l~l~~~~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l-~~L~~L~l~~~~~~~~~~---- 171 (321)
+.. +.+..|.+... +.. .+.....|+.|++++|.+... +.+.+... ..+++|.+..|.......
T Consensus 89 l~~-L~L~~~~l~~~~~~~l~~--~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLH-LSLANNRLGDRGAEELAQ--ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHH-hhhhhCccccchHHHHHH--HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 444 66666666511 112 456678888899999875421 11223332 566777777765433211
Q ss_pred cc--ccCCccEEEeccccccc-----cChhhh----ccCCCCeEecccCccccc----ccccccCCCC-CCEEEecCCCC
Q 037308 172 EI--SSGNINWLFLRETAIEE-----LPSSIE----RLLRLGHLDLSDCKRLKS----LPSSLFKLKS-LGVLNLGGCSN 235 (321)
Q Consensus 172 ~~--~~~~L~~L~l~~~~i~~-----l~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~l~~~~~ 235 (321)
.. ....++.++++.|.+.. ++..+. ...++++|.+++|.++.. ....+...+. +..+++..|..
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 11 25567778888887753 233333 355778888888776531 2223445555 66688877665
Q ss_pred CCc----cccccCCC-CCCcEEEcccCCCc-----ccchhhhccCCcCEEeccCCCC
Q 037308 236 LQR----LPECLGQL-SSPIILNLAKTNVE-----RIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 236 ~~~----~~~~~~~~-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
... ....+..+ ..++.++++.|.++ .+...+..++.++++.+..|+.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 432 23344445 67788888888887 3445566777888888888844
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=0.12 Score=41.98 Aligned_cols=81 Identities=20% Similarity=0.002 Sum_probs=59.3
Q ss_pred CCCEEEecCCCCCCccccccCCCCCCcEEEcccCC-Ccccc-hhhh-ccCCcCEEeccCCCCccccc-----Cccccccc
Q 037308 224 SLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN-VERIP-ESII-QLFVLRYLLLSYSERIQSVS-----LPLARGIL 295 (321)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~-~~l~-~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l 295 (321)
.++.++-+++.+..+.-+-+.++++++.|.+.+|. +.+.- +.++ -.++|+.|+|++|++|++-. -.++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46778888877777666778888999999988885 33211 2232 35799999999999998765 44688888
Q ss_pred cccccCccc
Q 037308 296 EDTQRSPHM 304 (321)
Q Consensus 296 ~~~~~~~~~ 304 (321)
.+++.....
T Consensus 182 ~l~~l~~v~ 190 (221)
T KOG3864|consen 182 HLYDLPYVA 190 (221)
T ss_pred HhcCchhhh
Confidence 877765554
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.94 E-value=0.46 Score=24.86 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=14.2
Q ss_pred CCCcEEEcccCCCcccch
Q 037308 247 SSPIILNLAKTNVERIPE 264 (321)
Q Consensus 247 ~~L~~L~l~~n~l~~l~~ 264 (321)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888875
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.30 E-value=0.75 Score=23.93 Aligned_cols=17 Identities=35% Similarity=0.110 Sum_probs=13.9
Q ss_pred cCCcCEEeccCCCCccc
Q 037308 269 LFVLRYLLLSYSERIQS 285 (321)
Q Consensus 269 l~~L~~L~l~~n~~l~~ 285 (321)
++.|++|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888899999888876
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.44 E-value=0.35 Score=24.59 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=5.0
Q ss_pred CCCeEecccCccc
Q 037308 200 RLGHLDLSDCKRL 212 (321)
Q Consensus 200 ~L~~L~l~~n~~~ 212 (321)
+|++|++++|.+.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.08 E-value=0.11 Score=43.23 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=33.7
Q ss_pred ccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC
Q 037308 178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT 257 (321)
Q Consensus 178 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 257 (321)
.+.||++.|.+-.+...+..++.+.+++++.|. ....|..++....++.+++..| ...-.|.+++..+.++.++...|
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccC
Confidence 333444444333333334444444445554433 2233343444444444443322 22333444455555555555544
Q ss_pred CC
Q 037308 258 NV 259 (321)
Q Consensus 258 ~l 259 (321)
.+
T Consensus 122 ~~ 123 (326)
T KOG0473|consen 122 EF 123 (326)
T ss_pred cc
Confidence 43
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.39 E-value=3.3 Score=21.67 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=7.6
Q ss_pred CCcEEEcccCCCcc
Q 037308 248 SPIILNLAKTNVER 261 (321)
Q Consensus 248 ~L~~L~l~~n~l~~ 261 (321)
+|+.|+++.|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 45555555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.10 E-value=0.15 Score=42.50 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=60.7
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
...+.+|++.+.+..+...+ -+..+..|+++.|++..++..++....+.+ ++...|+.+ ..|. ++...+.+++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~-~~~~~n~~~-~~p~--s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVN-AASHKNNHS-QQPK--SQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHH-HHhhccchh-hCCc--cccccCCcchhh
Confidence 66777777777766665555 577788888888888877777777777777 777777777 7776 778888888888
Q ss_pred ccCCCCC
Q 037308 137 LRGSKSL 143 (321)
Q Consensus 137 l~~n~~~ 143 (321)
.-++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7776643
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.95 E-value=11 Score=35.17 Aligned_cols=249 Identities=12% Similarity=-0.027 Sum_probs=111.1
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCC-----CCCCcCCcCceeEEeccCCcccccccCCCCC-
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLK-----SLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY- 102 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~-----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l- 102 (321)
+.+++++++.|.+..+++..+..+.. + +.++.|.+. .++....--.+++++++.|...+......+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~---p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN---P----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC---c----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHh
Confidence 45677777777655555533322211 1 334444321 1222223345677777777665422111110
Q ss_pred ---CChHhHHhhccccccc-cCCCCCCCCCCCCccEEEccCCCCCc----ccC----ccccCcccCcEEecCCCCCcccc
Q 037308 103 ---SNLNQIINATCNKLIA-KTPNPTLMPHLNKLVILNLRGSKSLK----SLP----SGIFNLEFLTKLDLSGCSKLKRL 170 (321)
Q Consensus 103 ---~~L~~~l~l~~~~l~~-~~~~~~~~~~l~~L~~L~l~~n~~~~----~~p----~~l~~l~~L~~L~l~~~~~~~~~ 170 (321)
..+.. ++.+...+.. ....+.....-.++.+.+++.|.... +.+ ..++.-.++ +|++..+..-...
T Consensus 238 a~~~vl~~-ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~ 315 (553)
T KOG4242|consen 238 AGTLVLFK-LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEK 315 (553)
T ss_pred hhhhhhhc-ccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhh
Confidence 01222 3333332220 11111133445577777777765321 222 223333455 6666654322211
Q ss_pred ccc------ccCCc--cEEEeccccccc--cChhhhccCCCCeEecccCcccccccccc--cCCCCCCEEEecCCCCC--
Q 037308 171 LEI------SSGNI--NWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSL--FKLKSLGVLNLGGCSNL-- 236 (321)
Q Consensus 171 ~~~------~~~~L--~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~~-- 236 (321)
+.. .-... -.+|+..|...+ .-....+-..++++.+.+|+..+...... ..-++.+.+++.+-...
T Consensus 316 lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqv 395 (553)
T KOG4242|consen 316 LKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQV 395 (553)
T ss_pred hhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCcee
Confidence 111 00001 124444444443 11222222357888888877666554432 23455666665442221
Q ss_pred ---Ccccccc----CCCCCCcEEEcccCCCcccch-h---hhccCCcCEEeccCCCCccccc
Q 037308 237 ---QRLPECL----GQLSSPIILNLAKTNVERIPE-S---IIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 237 ---~~~~~~~----~~~~~L~~L~l~~n~l~~l~~-~---l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+....-+ ....-+..+.++.+.+..-+. . +..-+.+++|++++| ..+..+
T Consensus 396 m~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn-~mgd~g 456 (553)
T KOG4242|consen 396 MDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGN-GMGDGG 456 (553)
T ss_pred ccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCC-CcccCC
Confidence 0000000 012235667777777763332 2 234568888888888 555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.46 E-value=6.8 Score=20.70 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=10.4
Q ss_pred CCCcEEEcccCCCc
Q 037308 247 SSPIILNLAKTNVE 260 (321)
Q Consensus 247 ~~L~~L~l~~n~l~ 260 (321)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888776
No 88
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=59.87 E-value=8.7 Score=18.73 Aligned_cols=19 Identities=53% Similarity=1.060 Sum_probs=14.8
Q ss_pred ceeEEeccCCcccccccCC
Q 037308 81 KLVFLKVPYSDIEQLWNGE 99 (321)
Q Consensus 81 ~L~~L~l~~~~l~~~~~~~ 99 (321)
+|..|+|.+.++..++.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4678888888888887764
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.12 E-value=19 Score=34.13 Aligned_cols=79 Identities=22% Similarity=0.085 Sum_probs=0.0
Q ss_pred cCCccEEEeccccccc---cChhhhccCCCCeEecccC--cccccccccccCCCCCCEEEecCCCCCCc-------cccc
Q 037308 175 SGNINWLFLRETAIEE---LPSSIERLLRLGHLDLSDC--KRLKSLPSSLFKLKSLGVLNLGGCSNLQR-------LPEC 242 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~---l~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~ 242 (321)
.+.+..+.+++|++.. +..-....|+|..|+|++| .+.....-.=-+..-|+.|-+.+|++.++ +...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Q ss_pred cCCCCCCcEEE
Q 037308 243 LGQLSSPIILN 253 (321)
Q Consensus 243 ~~~~~~L~~L~ 253 (321)
-..+|+|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Done!