Query 037308
Match_columns 321
No_of_seqs 126 out of 2489
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 6.2E-29 2.1E-33 230.1 21.8 286 10-303 35-408 (455)
2 3o6n_A APL1; leucine-rich repe 100.0 2.1E-28 7.2E-33 222.3 23.8 275 12-301 52-350 (390)
3 3rgz_A Protein brassinosteroid 100.0 3.1E-29 1.1E-33 246.5 19.3 231 54-287 413-721 (768)
4 3rgz_A Protein brassinosteroid 100.0 5.2E-29 1.8E-33 244.9 18.5 288 10-300 323-714 (768)
5 3oja_B Anopheles plasmodium-re 100.0 9.3E-28 3.2E-32 229.7 24.1 276 11-301 57-356 (597)
6 4eco_A Uncharacterized protein 100.0 1.4E-28 4.6E-33 237.0 17.4 283 11-302 255-599 (636)
7 2id5_A Lingo-1, leucine rich r 100.0 7.5E-28 2.6E-32 224.3 21.1 267 10-285 37-335 (477)
8 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-27 4.9E-32 224.7 22.3 150 151-303 321-481 (520)
9 4ecn_A Leucine-rich repeat pro 100.0 3.6E-28 1.2E-32 239.4 18.7 288 4-302 492-839 (876)
10 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-27 1.8E-31 223.0 23.1 278 10-303 57-510 (562)
11 2id5_A Lingo-1, leucine rich r 100.0 1.7E-27 5.8E-32 221.9 19.0 240 11-260 62-333 (477)
12 3t6q_A CD180 antigen; protein- 100.0 3.5E-27 1.2E-31 226.0 21.6 263 9-280 37-386 (606)
13 3v47_A TOLL-like receptor 5B a 100.0 1.1E-27 3.9E-32 221.6 17.3 269 10-287 59-412 (455)
14 3t6q_A CD180 antigen; protein- 100.0 6.7E-27 2.3E-31 224.0 23.2 282 9-302 258-559 (606)
15 4fmz_A Internalin; leucine ric 100.0 8.8E-27 3E-31 208.2 22.0 237 24-280 61-321 (347)
16 4fcg_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 212.6 16.0 218 58-280 81-311 (328)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1E-27 3.6E-32 227.0 16.9 282 10-300 31-441 (549)
18 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-28 8.2E-33 215.5 10.9 217 59-280 51-278 (313)
19 4eco_A Uncharacterized protein 99.9 3.4E-27 1.2E-31 227.3 18.0 267 3-287 305-603 (636)
20 4fmz_A Internalin; leucine ric 99.9 8.5E-26 2.9E-30 201.8 23.5 255 24-300 39-297 (347)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-26 4.4E-31 222.1 19.2 247 25-283 281-558 (606)
22 4fcg_A Uncharacterized protein 99.9 7.5E-27 2.6E-31 207.2 15.8 221 78-304 79-312 (328)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-26 5.5E-31 221.4 18.9 200 58-260 350-558 (606)
24 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-26 4.1E-31 204.6 14.8 250 29-287 50-308 (313)
25 1xku_A Decorin; proteoglycan, 99.9 1.4E-25 5E-30 199.1 19.5 221 58-287 52-279 (330)
26 1o6v_A Internalin A; bacterial 99.9 1.8E-25 6.2E-30 207.7 21.0 218 25-260 64-300 (466)
27 1xku_A Decorin; proteoglycan, 99.9 3.6E-25 1.2E-29 196.6 21.6 241 29-282 52-305 (330)
28 4ecn_A Leucine-rich repeat pro 99.9 1.1E-25 3.8E-30 221.7 20.1 249 24-287 568-843 (876)
29 3j0a_A TOLL-like receptor 5; m 99.9 8.9E-26 3E-30 224.1 19.4 283 10-300 29-391 (844)
30 3o6n_A APL1; leucine-rich repe 99.9 1E-25 3.6E-30 204.6 18.1 260 27-302 43-330 (390)
31 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-25 8E-30 197.9 19.7 240 29-282 54-306 (332)
32 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-26 1.4E-30 214.7 14.9 278 10-300 26-431 (520)
33 1o6v_A Internalin A; bacterial 99.9 6E-25 2E-29 204.2 22.4 270 10-304 73-367 (466)
34 2z63_A TOLL-like receptor 4, v 99.9 1.8E-25 6.2E-30 212.4 19.3 126 175-301 395-529 (570)
35 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-25 8.4E-30 197.8 18.8 256 29-301 33-305 (332)
36 2z63_A TOLL-like receptor 4, v 99.9 1.4E-25 4.6E-30 213.3 17.8 124 177-301 374-505 (570)
37 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-25 7.7E-30 221.2 19.4 280 10-303 53-414 (844)
38 1ziw_A TOLL-like receptor 3; i 99.9 9.4E-25 3.2E-29 211.9 23.2 285 11-299 254-618 (680)
39 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-25 1.6E-29 214.0 20.1 238 10-256 30-305 (680)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-25 1.2E-29 210.3 17.7 141 9-165 35-180 (562)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-24 4.5E-29 201.1 20.2 232 25-287 60-303 (457)
42 3oja_B Anopheles plasmodium-re 99.9 5.5E-25 1.9E-29 210.5 18.1 259 28-302 50-336 (597)
43 3zyj_A Leucine-rich repeat-con 99.9 2.2E-24 7.4E-29 199.0 20.4 222 58-283 64-292 (440)
44 3zyi_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 201.1 18.9 221 58-282 75-302 (452)
45 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-24 1.1E-28 205.8 22.3 282 9-299 56-576 (635)
46 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-24 1.3E-28 198.1 21.7 251 23-301 36-297 (457)
47 2z66_A Variable lymphocyte rec 99.9 6.2E-25 2.1E-29 192.9 15.6 223 29-260 28-261 (306)
48 2z66_A Variable lymphocyte rec 99.9 6.4E-25 2.2E-29 192.8 15.1 221 58-282 28-260 (306)
49 2z81_A CD282 antigen, TOLL-lik 99.9 5E-25 1.7E-29 208.6 15.3 264 29-302 26-422 (549)
50 1ozn_A Reticulon 4 receptor; N 99.9 8.7E-24 3E-28 183.7 20.2 219 61-283 14-238 (285)
51 2z80_A TOLL-like receptor 2, v 99.9 1.4E-24 4.9E-29 194.5 13.7 250 29-286 52-317 (353)
52 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-25 5.1E-30 198.0 6.7 257 11-286 16-278 (317)
53 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-23 4.6E-28 182.5 17.9 199 58-260 32-238 (285)
54 1jl5_A Outer protein YOPM; leu 99.9 6.5E-24 2.2E-28 196.3 15.4 254 12-299 18-286 (454)
55 1jl5_A Outer protein YOPM; leu 99.9 1.7E-22 5.7E-27 186.9 22.6 205 58-287 153-373 (454)
56 3zyi_A Leucine-rich repeat-con 99.9 8.2E-23 2.8E-27 189.0 19.4 222 29-260 75-303 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 8.6E-23 2.9E-27 188.3 19.1 222 29-260 64-292 (440)
58 2z80_A TOLL-like receptor 2, v 99.9 4.5E-23 1.5E-27 184.7 14.2 241 10-261 57-315 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-22 2.6E-26 188.3 21.8 219 29-282 61-296 (622)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-24 7.3E-29 190.5 3.9 231 10-257 39-272 (317)
61 3oja_A Leucine-rich immune mol 99.9 1.6E-23 5.6E-28 195.4 9.5 232 28-278 33-270 (487)
62 2z62_A TOLL-like receptor 4, v 99.9 5.5E-22 1.9E-26 171.5 18.1 216 65-285 14-239 (276)
63 3oja_A Leucine-rich immune mol 99.9 1.1E-23 3.9E-28 196.4 6.2 233 4-255 35-270 (487)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-21 1.2E-25 183.9 22.1 235 29-301 40-295 (622)
65 1wwl_A Monocyte differentiatio 99.9 1.9E-23 6.5E-28 184.0 5.6 243 25-285 39-310 (312)
66 1wwl_A Monocyte differentiatio 99.9 1.5E-23 5.1E-28 184.7 4.1 233 58-299 43-305 (312)
67 2o6q_A Variable lymphocyte rec 99.9 6.2E-21 2.1E-25 164.5 18.5 198 58-259 16-217 (270)
68 2o6q_A Variable lymphocyte rec 99.9 9.3E-21 3.2E-25 163.4 19.6 196 81-282 17-217 (270)
69 1p9a_G Platelet glycoprotein I 99.9 2.6E-21 9E-26 168.5 16.0 195 58-260 10-208 (290)
70 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.9E-25 164.5 18.4 200 78-285 8-210 (290)
71 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.5E-26 170.2 13.9 193 58-263 41-233 (308)
72 1h6u_A Internalin H; cell adhe 99.9 6.9E-21 2.3E-25 167.3 15.3 194 78-287 39-233 (308)
73 3rfs_A Internalin B, repeat mo 99.9 1.3E-20 4.5E-25 162.6 15.7 198 58-287 41-239 (272)
74 4glp_A Monocyte differentiatio 99.8 5.9E-21 2E-25 167.9 12.5 221 58-284 64-307 (310)
75 2z62_A TOLL-like receptor 4, v 99.8 3.3E-20 1.1E-24 160.3 16.6 199 58-260 28-237 (276)
76 2xwt_C Thyrotropin receptor; s 99.8 6.8E-21 2.3E-25 161.2 11.4 204 70-282 23-238 (239)
77 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-23 5.2E-28 194.2 -5.5 274 25-302 24-382 (461)
78 1z7x_W Ribonuclease inhibitor; 99.8 3.6E-23 1.2E-27 191.7 -3.2 233 23-260 50-354 (461)
79 3rfs_A Internalin B, repeat mo 99.8 2.3E-20 7.9E-25 161.1 12.2 200 58-285 19-220 (272)
80 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-19 1.1E-23 171.0 21.1 250 25-286 324-583 (635)
81 2ca6_A RAN GTPase-activating p 99.8 5E-22 1.7E-26 180.0 1.4 242 18-284 21-316 (386)
82 4ay9_X Follicle-stimulating ho 99.8 6.4E-20 2.2E-24 164.0 14.4 217 58-280 30-256 (350)
83 2ast_B S-phase kinase-associat 99.8 3.1E-21 1E-25 171.4 5.3 244 30-286 48-308 (336)
84 2xwt_C Thyrotropin receptor; s 99.8 3.6E-20 1.2E-24 156.7 10.8 199 92-300 23-236 (239)
85 3m19_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 150.5 16.2 176 58-260 14-192 (251)
86 3m19_A Variable lymphocyte rec 99.8 9.6E-19 3.3E-23 149.1 16.5 169 109-282 19-191 (251)
87 2ca6_A RAN GTPase-activating p 99.8 7.2E-21 2.5E-25 172.4 3.2 180 126-306 90-319 (386)
88 2ast_B S-phase kinase-associat 99.8 1.1E-20 3.7E-25 167.9 2.2 236 58-300 47-303 (336)
89 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 159.7 11.2 245 61-312 12-265 (350)
90 4glp_A Monocyte differentiatio 99.8 2.5E-19 8.7E-24 157.4 9.4 216 78-299 62-303 (310)
91 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.2E-23 151.7 13.1 172 78-263 44-216 (291)
92 3cvr_A Invasion plasmid antige 99.8 4.9E-18 1.7E-22 160.3 16.0 187 58-269 59-253 (571)
93 3goz_A Leucine-rich repeat-con 99.8 3.9E-20 1.3E-24 166.2 0.8 247 10-260 3-297 (362)
94 3cvr_A Invasion plasmid antige 99.8 9.7E-18 3.3E-22 158.3 15.9 165 58-244 80-251 (571)
95 4ezg_A Putative uncharacterize 99.8 6.4E-18 2.2E-22 138.6 11.9 154 125-284 39-194 (197)
96 1m9s_A Internalin B; cell inva 99.7 4.8E-18 1.6E-22 161.9 11.5 189 58-260 21-210 (605)
97 3goz_A Leucine-rich repeat-con 99.7 1.1E-19 3.9E-24 163.2 -0.3 244 33-286 2-299 (362)
98 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9E-22 143.3 13.3 168 58-237 46-214 (291)
99 1m9s_A Internalin B; cell inva 99.7 5.1E-18 1.7E-22 161.7 8.7 169 58-238 43-212 (605)
100 2o6s_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 133.3 12.4 176 61-270 10-189 (208)
101 4ezg_A Putative uncharacterize 99.7 5.1E-17 1.7E-21 133.2 10.5 148 58-236 44-194 (197)
102 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.6E-21 137.4 12.8 171 79-263 18-188 (263)
103 2v70_A SLIT-2, SLIT homolog 2 99.7 4.3E-16 1.5E-20 130.0 15.4 147 109-260 16-166 (220)
104 2o6s_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 129.5 13.6 167 109-287 12-182 (208)
105 2v9t_B SLIT homolog 2 protein 99.7 7.5E-16 2.6E-20 128.5 15.3 147 109-260 16-165 (220)
106 2xot_A Amphoterin-induced prot 99.7 4.8E-16 1.6E-20 139.4 14.8 172 84-282 22-201 (361)
107 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 140.3 7.1 165 58-235 19-184 (263)
108 3ogk_B Coronatine-insensitive 99.7 7.7E-18 2.6E-22 160.6 3.2 224 58-286 270-528 (592)
109 2v9t_B SLIT homolog 2 protein 99.7 5.9E-16 2E-20 129.1 14.1 146 133-281 14-163 (220)
110 3ogk_B Coronatine-insensitive 99.7 5.3E-18 1.8E-22 161.7 1.3 268 27-301 162-499 (592)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 4.4E-16 1.5E-20 129.9 12.4 153 61-239 14-169 (220)
112 3e6j_A Variable lymphocyte rec 99.7 1.5E-15 5.1E-20 127.5 14.0 84 176-260 88-172 (229)
113 3e6j_A Variable lymphocyte rec 99.7 1.9E-15 6.6E-20 126.8 14.6 110 175-285 63-174 (229)
114 1dce_A Protein (RAB geranylger 99.7 2E-18 6.8E-23 163.5 -4.5 190 78-287 347-549 (567)
115 2xot_A Amphoterin-induced prot 99.6 6.3E-16 2.2E-20 138.6 11.8 173 61-237 21-203 (361)
116 1dce_A Protein (RAB geranylger 99.6 3.1E-18 1.1E-22 162.1 -4.3 197 58-277 349-567 (567)
117 2ell_A Acidic leucine-rich nuc 99.6 4.7E-15 1.6E-19 118.2 11.9 133 129-285 23-161 (168)
118 2ell_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 118.1 10.9 127 174-303 22-160 (168)
119 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.6E-19 118.3 13.6 126 157-283 13-139 (193)
120 2je0_A Acidic leucine-rich nuc 99.6 5.1E-15 1.8E-19 115.5 9.3 127 129-278 16-148 (149)
121 2p1m_B Transport inhibitor res 99.6 9.2E-17 3.1E-21 153.1 -1.2 82 219-302 428-518 (594)
122 1w8a_A SLIT protein; signaling 99.6 1.9E-14 6.4E-19 117.4 12.6 125 133-260 11-139 (192)
123 4b8c_D Glucose-repressible alc 99.6 3.6E-16 1.2E-20 152.3 1.2 117 68-190 211-330 (727)
124 4b8c_D Glucose-repressible alc 99.6 3.8E-15 1.3E-19 145.1 7.3 160 109-280 206-369 (727)
125 1w8a_A SLIT protein; signaling 99.5 6.2E-14 2.1E-18 114.2 12.4 125 157-282 11-138 (192)
126 2je0_A Acidic leucine-rich nuc 99.5 2.6E-14 8.8E-19 111.5 9.5 110 175-287 16-129 (149)
127 3sb4_A Hypothetical leucine ri 99.5 6.8E-14 2.3E-18 123.7 11.8 123 28-163 24-157 (329)
128 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-14 1.6E-18 113.2 9.8 129 126-280 15-150 (176)
129 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 109.4 12.8 126 157-283 10-137 (177)
130 2p1m_B Transport inhibitor res 99.5 2.5E-16 8.6E-21 150.1 -6.0 200 78-282 287-518 (594)
131 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-13 6.4E-18 109.7 9.1 124 175-302 18-152 (176)
132 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.5E-17 106.4 11.9 86 175-260 53-139 (193)
133 2o6r_A Variable lymphocyte rec 99.4 5.4E-12 1.8E-16 101.2 13.6 87 175-261 51-138 (177)
134 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 103.4 10.7 105 157-262 15-120 (174)
135 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 102.9 10.2 105 155-260 10-115 (170)
136 1ds9_A Outer arm dynein; leuci 99.4 1.5E-14 5.2E-19 118.4 -2.8 125 149-276 43-180 (198)
137 4fdw_A Leucine rich hypothetic 99.3 6.8E-11 2.3E-15 107.2 18.6 217 57-287 134-361 (401)
138 4fdw_A Leucine rich hypothetic 99.3 5.6E-11 1.9E-15 107.7 17.9 241 19-280 126-380 (401)
139 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 97.8 11.3 104 177-282 10-114 (170)
140 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 97.4 11.3 102 178-281 14-116 (174)
141 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.4E-18 112.9 -3.4 105 174-282 46-152 (198)
142 3sb4_A Hypothetical leucine ri 99.3 4.3E-11 1.5E-15 105.7 12.3 235 28-277 48-328 (329)
143 3un9_A NLR family member X1; l 99.2 2.8E-12 9.5E-17 115.2 2.8 157 129-286 71-254 (372)
144 2ifg_A High affinity nerve gro 99.1 1.2E-10 4E-15 103.5 9.7 102 158-260 12-116 (347)
145 3un9_A NLR family member X1; l 99.0 9E-11 3.1E-15 105.3 2.5 133 129-261 100-253 (372)
146 2ifg_A High affinity nerve gro 99.0 5E-09 1.7E-13 92.9 12.0 102 134-238 12-118 (347)
147 4fs7_A Uncharacterized protein 98.8 7.2E-08 2.4E-12 87.1 14.8 209 58-279 162-375 (394)
148 2ra8_A Uncharacterized protein 98.8 5.5E-09 1.9E-13 93.1 6.9 156 128-285 137-321 (362)
149 4fs7_A Uncharacterized protein 98.8 1.6E-07 5.4E-12 84.8 16.7 60 218-279 292-352 (394)
150 4h09_A Hypothetical leucine ri 98.6 6.3E-06 2.2E-10 73.7 21.5 100 175-277 239-340 (379)
151 1io0_A Tropomodulin; LRR prote 98.6 4.1E-08 1.4E-12 79.0 5.2 91 193-284 59-164 (185)
152 2ra8_A Uncharacterized protein 98.6 3.4E-08 1.2E-12 88.0 4.7 150 127-281 169-341 (362)
153 4gt6_A Cell surface protein; l 98.5 7.1E-06 2.4E-10 73.9 18.8 102 175-280 264-367 (394)
154 3e4g_A ATP synthase subunit S, 98.5 7.7E-08 2.6E-12 76.1 3.9 87 199-285 61-154 (176)
155 1io0_A Tropomodulin; LRR prote 98.4 2.1E-07 7E-12 74.9 4.2 85 176-260 65-164 (185)
156 4gt6_A Cell surface protein; l 98.3 5.2E-05 1.8E-09 68.2 17.9 127 149-280 260-388 (394)
157 4h09_A Hypothetical leucine ri 98.2 0.00012 4.1E-09 65.3 19.6 274 3-295 46-347 (379)
158 3e4g_A ATP synthase subunit S, 98.1 2.6E-06 9E-11 67.3 5.6 36 130-165 61-96 (176)
159 3rw6_A Nuclear RNA export fact 98.0 6.7E-06 2.3E-10 69.7 6.5 80 196-276 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.9 9.7E-06 3.3E-10 68.7 5.4 78 175-253 169-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 8.5E-05 2.9E-09 59.7 5.3 89 192-280 63-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00056 1.9E-08 54.9 4.8 86 175-260 69-170 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0077 2.6E-07 44.9 5.6 33 201-233 33-65 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.014 4.9E-07 43.4 6.0 54 158-212 12-68 (130)
165 2lz0_A Uncharacterized protein 49.5 27 0.00093 24.0 4.7 13 219-231 16-28 (100)
166 2lz0_A Uncharacterized protein 36.1 40 0.0014 23.1 3.8 44 188-232 8-52 (100)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.2e-29 Score=230.12 Aligned_cols=286 Identities=17% Similarity=0.160 Sum_probs=223.7
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~ 86 (321)
||++++......+..++.+++|++|++++|.+.+. ..+..+.. ++|++|++++|.+..+ |..+ ++++|++|+
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccce-----ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45566655666678899999999999999874322 12344565 9999999999998776 4445 799999999
Q ss_pred ccCCccccc-cc--CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCc----------
Q 037308 87 VPYSDIEQL-WN--GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNL---------- 153 (321)
Q Consensus 87 l~~~~l~~~-~~--~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l---------- 153 (321)
+++|.++.. +. .+..+++|+. ++++.|.+.+..+. ..+..+++|++|++++|.+.+..|..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEM-LVLRDNNIKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCE-EECCSSBCCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCE-EECCCCccCccCcc-cccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999762 23 3778899999 99999999844343 127889999999999998766655544433
Q ss_pred ------------------------ccCcEEecCCCCCccccccc------------------------------------
Q 037308 154 ------------------------EFLTKLDLSGCSKLKRLLEI------------------------------------ 173 (321)
Q Consensus 154 ------------------------~~L~~L~l~~~~~~~~~~~~------------------------------------ 173 (321)
++|+.|++++|...+..+..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 67888888887543322111
Q ss_pred -----ccCCccEEEecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCC
Q 037308 174 -----SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS 247 (321)
Q Consensus 174 -----~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 247 (321)
..++|+.|++++|.+.++ |..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125788999999998885 56688999999999999998888888899999999999999998877788899999
Q ss_pred CCcEEEcccCCCccc-chhhhccCCcCEEeccCCCCccccc-----CccccccccccccCcc
Q 037308 248 SPIILNLAKTNVERI-PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPH 303 (321)
Q Consensus 248 ~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~ 303 (321)
+|+.|++++|+++.+ |..+..+++|++|++++| .++.++ ..++++.|++.+..-.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 999999999999966 578899999999999999 788877 2357788888774433
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.1e-28 Score=222.32 Aligned_cols=275 Identities=13% Similarity=0.108 Sum_probs=215.5
Q ss_pred cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEecc
Q 037308 12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVP 88 (321)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~ 88 (321)
++++....++...+..+++|++|++++|.++ ...+..+.. ++|++|++++|.+..++.. + .+++|++|+++
T Consensus 52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp EESCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ecCCchhhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 3444445566677888999999999988744 223345666 8999999999998887655 3 79999999999
Q ss_pred CCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC-
Q 037308 89 YSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK- 166 (321)
Q Consensus 89 ~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~- 166 (321)
+|.++.++... ..+++|+. ++++.|.+.+..+. .+..+++|++|++++|.+... + ++.+++|+.++++.|..
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTT-LSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCS
T ss_pred CCccCcCCHHHhcCCCCCcE-EECCCCccCccChh--hccCCCCCCEEECCCCcCCcc-c--cccccccceeeccccccc
Confidence 99999887764 78899999 99999999833343 688899999999999885443 2 33445555544444321
Q ss_pred -----------------cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308 167 -----------------LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229 (321)
Q Consensus 167 -----------------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 229 (321)
+..++...+++|+.|++++|.+++.+ .+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 22233334568899999999888874 588899999999999998888888899999999999
Q ss_pred ecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc--CccccccccccccC
Q 037308 230 LGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRS 301 (321)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~ 301 (321)
+++|.+.+ ++..+..+++|+.|++++|+++.+|..+..+++|++|++++| .++.++ ..++++.|++.+..
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeCchhhccCCEEEcCCCC
Confidence 99987654 566677899999999999999999988999999999999999 788887 56788888887754
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.1e-29 Score=246.51 Aligned_cols=231 Identities=23% Similarity=0.260 Sum_probs=163.8
Q ss_pred CCCc-CcccEEEecCCCCC-CCCCcC-CcCceeEEeccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCC
Q 037308 54 DPRF-AEVKYFHWHGYPLK-SLPSNL-SAEKLVFLKVPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129 (321)
Q Consensus 54 ~l~~-~~L~~l~l~~~~l~-~~~~~~-~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l 129 (321)
.+.. ++|+.|++++|.+. .+|..+ .+++|++|++++|.+. .++..+..+++|+. ++++.|.+.+.+|. .+..+
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~--~l~~l 489 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET-LILDFNDLTGEIPS--GLSNC 489 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE-EECCSSCCCSCCCG--GGGGC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE-EEecCCcccCcCCH--HHhcC
Confidence 3444 66666776666654 344444 5666777777776665 34455566666666 77777777655655 66677
Q ss_pred CCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc-cChh------------
Q 037308 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSS------------ 194 (321)
Q Consensus 130 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~------------ 194 (321)
++|++|++++|.+.+.+|..++.+++|+.|++++|...+.+|.. .+++|++|++++|.+.+ +|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 77777777777766666766777777777777776655555543 46667777777776652 4432
Q ss_pred ----------------------------------------------------------hhccCCCCeEecccCccccccc
Q 037308 195 ----------------------------------------------------------IERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 195 ----------------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
+..+++|+.|++++|.+.+.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 2234567888888888888888
Q ss_pred ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
..++.+++|+.|++++|.+.+.+|..++.+++|+.||+++|+++ .+|..+..++.|++|++++|+.-+.+|
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 88888888888888888888888888888888888888888888 788888888888888888885556666
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.2e-29 Score=244.91 Aligned_cols=288 Identities=19% Similarity=0.214 Sum_probs=218.6
Q ss_pred eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCcccccee-------------------ccCCCC---cCcccEEEec
Q 037308 10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVS-------------------YLQDPR---FAEVKYFHWH 66 (321)
Q Consensus 10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-------------------~~~~l~---~~~L~~l~l~ 66 (321)
|+++++... .++...++.+++|++|++++|.+++..+.... .+..+. .++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 344555443 45555688888999999988876544332111 111111 1456777777
Q ss_pred CCCCC-CCCCcC-CcCceeEEeccCCcccc-cccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC
Q 037308 67 GYPLK-SLPSNL-SAEKLVFLKVPYSDIEQ-LWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL 143 (321)
Q Consensus 67 ~~~l~-~~~~~~-~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 143 (321)
+|.+. .+|..+ .+++|++|++++|.++. ++..+..+++|+. ++++.|.+.+.+|. .+..+++|++|++++|.+.
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~-L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE-EECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE-EECCCCcccCcCCH--HHcCCCCceEEEecCCccc
Confidence 66654 455555 67888888888888763 4566777888888 88888888877766 7888888899999988877
Q ss_pred cccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCccccccccc--
Q 037308 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSS-- 218 (321)
Q Consensus 144 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~-- 218 (321)
+.+|..+..+++|+.|++++|...+.+|.. .+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 788888888999999999988776666654 57889999999999884 7888889999999999998877665543
Q ss_pred --------------------------------------------------------------------ccCCCCCCEEEe
Q 037308 219 --------------------------------------------------------------------LFKLKSLGVLNL 230 (321)
Q Consensus 219 --------------------------------------------------------------------~~~l~~L~~L~l 230 (321)
++.+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 233567899999
Q ss_pred cCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc----Ccccccccccccc
Q 037308 231 GGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQR 300 (321)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~ 300 (321)
++|++.+.+|..++.+++|+.|++++|+++ .+|..++.+++|++|++++|+.-..+| ..++++.|+++++
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999 899999999999999999995555766 3356777777765
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=9.3e-28 Score=229.71 Aligned_cols=276 Identities=13% Similarity=0.108 Sum_probs=218.9
Q ss_pred ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--CcCceeEEec
Q 037308 11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKV 87 (321)
Q Consensus 11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l 87 (321)
+++++....+++..++.+++|++|++++|.++ ...+..+.. ++|++|++++|.+..++... .+++|++|++
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 44455455666677888999999999998754 223345666 99999999999998887653 7999999999
Q ss_pred cCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC
Q 037308 88 PYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166 (321)
Q Consensus 88 ~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~ 166 (321)
++|.++.++... ..+++|+. |+++.|.+.+..+. .+..+++|++|++++|.+.+. + ++.+++|+.|++++|..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~-L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTT-LSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCC
T ss_pred eCCCCCCCCHHHhccCCCCCE-EEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcc
Confidence 999999887764 78899999 99999999844444 788999999999999985543 2 33455555555544322
Q ss_pred ------------------cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEE
Q 037308 167 ------------------LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVL 228 (321)
Q Consensus 167 ------------------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 228 (321)
+..++...+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..++.+++|+.|
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 2222333356788899998888875 468889999999999999999889999999999999
Q ss_pred EecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc--CccccccccccccC
Q 037308 229 NLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRS 301 (321)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~ 301 (321)
++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|++|++++| .+..++ ..++++.|++.++.
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSC
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcChhhcCCCCEEEeeCCC
Confidence 999987765 567778899999999999999999998999999999999999 777777 55788888887754
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.4e-28 Score=237.02 Aligned_cols=283 Identities=14% Similarity=0.145 Sum_probs=201.8
Q ss_pred ecCchhhhccChhhhcCCCCceEEEEeecC-CCC-ccccce-----------------------eccC--CCCc-CcccE
Q 037308 11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSS-FNG-ENKCKV-----------------------SYLQ--DPRF-AEVKY 62 (321)
Q Consensus 11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~-----------------------~~~~--~l~~-~~L~~ 62 (321)
+++++.....-+..++.+++|++|++++|. ++| ..+... ..+. .+.. ++|+.
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE
Confidence 334444344445677888888888888887 766 322111 1122 2334 66666
Q ss_pred EEecCCCCC-CCCCcC-CcCceeEEeccCCcccccccCCCCCCC-hHhHHhhccccccccCCCCCCCCCCC--CccEEEc
Q 037308 63 FHWHGYPLK-SLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSN-LNQIINATCNKLIAKTPNPTLMPHLN--KLVILNL 137 (321)
Q Consensus 63 l~l~~~~l~-~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~-L~~~l~l~~~~l~~~~~~~~~~~~l~--~L~~L~l 137 (321)
|++++|.+. .+| .+ .+++|++|++++|.++.++..+..+++ |+. ++++.|.++ .+|. .+..+. +|++|++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~-L~Ls~N~l~-~lp~--~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN-LSFAHNKLK-YIPN--IFDAKSVSVMSAIDF 409 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCE-EECCSSCCS-SCCS--CCCTTCSSCEEEEEC
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcE-EEccCCcCc-ccch--hhhhcccCccCEEEC
Confidence 666666665 666 33 566777777777777766666777777 777 777777777 6765 554443 7888888
Q ss_pred cCCCCCcccCcccc-------CcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhcc--------C
Q 037308 138 RGSKSLKSLPSGIF-------NLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERL--------L 199 (321)
Q Consensus 138 ~~n~~~~~~p~~l~-------~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l--------~ 199 (321)
++|.+.+..|..+. .+++|+.|++++|... .+|.. .+++|++|++++|.++.+|...... +
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred cCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 88877776666666 6678888888886544 45543 3678888888888888877643322 2
Q ss_pred CCCeEecccCccccccccccc--CCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc------cCCCc-ccchhhhccC
Q 037308 200 RLGHLDLSDCKRLKSLPSSLF--KLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA------KTNVE-RIPESIIQLF 270 (321)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~n~l~-~l~~~l~~l~ 270 (321)
+|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+++ +|++. .+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 8889999988877 5677666 88999999999988877 78888889999999994 45555 7888888999
Q ss_pred CcCEEeccCCCCccccc--CccccccccccccCc
Q 037308 271 VLRYLLLSYSERIQSVS--LPLARGILEDTQRSP 302 (321)
Q Consensus 271 ~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~~ 302 (321)
+|++|++++| .++.+| +.++++.|++.++.-
T Consensus 567 ~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 567 SLTQLQIGSN-DIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp SCCEEECCSS-CCCBCCSCCCTTCCEEECCSCTT
T ss_pred CCCEEECCCC-cCCccCHhHhCcCCEEECcCCCC
Confidence 9999999999 668888 668889998888643
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=7.5e-28 Score=224.32 Aligned_cols=267 Identities=19% Similarity=0.162 Sum_probs=187.4
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~ 86 (321)
||++++......+..|..+++|++|++++|.++ ...+..+.. ++|++|++++|.+..++... .+++|++|+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 556666666666778888999999999988754 233455666 88899999888888887653 788888888
Q ss_pred ccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecC---
Q 037308 87 VPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS--- 162 (321)
Q Consensus 87 l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~--- 162 (321)
+++|.+..+. ..+..+++|+. ++++.|.+.+..+. .+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKS-LEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCE-EEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCCCccccCChhHccccccCCE-EECCCCccceeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 8888887763 45677788888 88888877743443 67777777777777776443322234444455555444
Q ss_pred ---------------------CCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCccccccccc
Q 037308 163 ---------------------GCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSS 218 (321)
Q Consensus 163 ---------------------~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~ 218 (321)
+|...+.++.. ...+|+.|++++|.++++|. .+..+++|++|++++|.+.+..+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 44444433332 23367777777777777774 4677778888888888777666666
Q ss_pred ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308 219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~ 285 (321)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. .+..+++|++|++++|+...+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 7778888888888877777777777788888888888888887764 456777888888888854433
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=224.71 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=112.4
Q ss_pred cCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc---ChhhhccCCCCeEecccCcccccccc-cccCCCC
Q 037308 151 FNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL---PSSIERLLRLGHLDLSDCKRLKSLPS-SLFKLKS 224 (321)
Q Consensus 151 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~ 224 (321)
..+++|++|++++|...+..+.. .+++|++|++++|.++++ |..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45667777777776655444433 467788888888888753 34577778888888888887764554 4677788
Q ss_pred CCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-C----ccccccccccc
Q 037308 225 LGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-L----PLARGILEDTQ 299 (321)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~----~~~l~~l~~~~ 299 (321)
|+.|++++|.+.+..|..+. ++|+.|++++|+++.+|..+..+++|++|++++| .++.+| . .++++.|++.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC
Confidence 88888888887776666543 7899999999999999988889999999999999 888887 1 34677777776
Q ss_pred cCcc
Q 037308 300 RSPH 303 (321)
Q Consensus 300 ~~~~ 303 (321)
..-.
T Consensus 478 N~~~ 481 (520)
T 2z7x_B 478 NPWD 481 (520)
T ss_dssp SCBC
T ss_pred CCCc
Confidence 5443
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.6e-28 Score=239.39 Aligned_cols=288 Identities=16% Similarity=0.153 Sum_probs=177.7
Q ss_pred ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecC-CCC-ccccceeccC-CCCc-CcccEEEecCCCCCCCCC--cC
Q 037308 4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSS-FNG-ENKCKVSYLQ-DPRF-AEVKYFHWHGYPLKSLPS--NL 77 (321)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~-~l~~-~~L~~l~l~~~~l~~~~~--~~ 77 (321)
+++.+.+ +++.....-+..++.+++|++|++++|. ++| ..+....... .+.. ++|+.|++++|.+..+|. .+
T Consensus 492 ~L~~L~L--s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 492 DLTDVEL--YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TCCEEEE--ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCEEEC--cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 3444444 4443334444678888888888888886 665 3332221111 2222 566666666666666666 33
Q ss_pred -CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCC-ccEEEccCCCCCcccCccccCccc
Q 037308 78 -SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNK-LVILNLRGSKSLKSLPSGIFNLEF 155 (321)
Q Consensus 78 -~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~p~~l~~l~~ 155 (321)
.+++|+.|++++|.++.++ .+..+++|+. ++++.|.+. .+|. .+..+++ |++|++++|.+. .+|..+..++.
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~-L~Ls~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD-LKLDYNQIE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESE-EECCSSCCS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceE-EECcCCccc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 5666666666666666555 5566666666 666666666 5554 5566665 666666666533 44544433322
Q ss_pred --CcEEecCCCCCcc----------------------------ccccc---ccCCccEEEeccccccccChhhhc-----
Q 037308 156 --LTKLDLSGCSKLK----------------------------RLLEI---SSGNINWLFLRETAIEELPSSIER----- 197 (321)
Q Consensus 156 --L~~L~l~~~~~~~----------------------------~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~----- 197 (321)
|+.|++++|...+ .+|.. .+++|+.|++++|.++.+|..+..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 4444444443322 33322 245666677766666666654322
Q ss_pred ---cCCCCeEecccCccccccccccc--CCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc------CCCc-ccchh
Q 037308 198 ---LLRLGHLDLSDCKRLKSLPSSLF--KLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK------TNVE-RIPES 265 (321)
Q Consensus 198 ---l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~l~-~l~~~ 265 (321)
+++|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |++. .+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 226777777777655 5566555 77788888888777665 677777788888888765 5544 67777
Q ss_pred hhccCCcCEEeccCCCCccccc--CccccccccccccCc
Q 037308 266 IIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRSP 302 (321)
Q Consensus 266 l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~~ 302 (321)
+..+++|++|++++| .++.+| ++++++.|+++++.-
T Consensus 802 l~~L~~L~~L~Ls~N-~L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp GGGCSSCCEEECCSS-CCCBCCSCCCSSSCEEECCSCTT
T ss_pred HhcCCCCCEEECCCC-CCCccCHhhcCCCCEEECCCCCC
Confidence 788888888888888 568887 667888888887654
No 10
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.2e-27 Score=223.01 Aligned_cols=278 Identities=15% Similarity=0.148 Sum_probs=198.0
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP 88 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~ 88 (321)
||++++......+..|+.+++|++|++++|.++ ...+..+.. ++|++|++++|.+..+|.. .+++|++|+++
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS 129 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence 455666666676778889999999999998754 233455666 8888999988888888877 88888888888
Q ss_pred CCcccccc--cCCCCCCChHhHHhhccccccccCCCCCCCCCCC------------------------------------
Q 037308 89 YSDIEQLW--NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLN------------------------------------ 130 (321)
Q Consensus 89 ~~~l~~~~--~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~------------------------------------ 130 (321)
+|+++.++ ..+..+++|+. ++++.|.+.+ . .+..++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~-L~L~~n~l~~-~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTF-LGLSAAKFRQ-L----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCE-EEEECSBCCT-T----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCccccCchHhhcccCcccE-EecCCCcccc-C----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 88887754 56777778777 7777776652 1 111112
Q ss_pred -------------------------------------------------------------------------CccEEEc
Q 037308 131 -------------------------------------------------------------------------KLVILNL 137 (321)
Q Consensus 131 -------------------------------------------------------------------------~L~~L~l 137 (321)
+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 3444444
Q ss_pred cCCCCCcccCccc-----------------------------------------------------cCcccCcEEecCCC
Q 037308 138 RGSKSLKSLPSGI-----------------------------------------------------FNLEFLTKLDLSGC 164 (321)
Q Consensus 138 ~~n~~~~~~p~~l-----------------------------------------------------~~l~~L~~L~l~~~ 164 (321)
++|.+.+.+|..+ ..+++|++|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 4444333444433 45667777777776
Q ss_pred CCccccccc--ccCCccEEEeccccccccC---hhhhccCCCCeEecccCcccccccc-cccCCCCCCEEEecCCCCCCc
Q 037308 165 SKLKRLLEI--SSGNINWLFLRETAIEELP---SSIERLLRLGHLDLSDCKRLKSLPS-SLFKLKSLGVLNLGGCSNLQR 238 (321)
Q Consensus 165 ~~~~~~~~~--~~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~ 238 (321)
...+..+.. .+++|++|++++|.+++++ ..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 655444433 4677888888888887655 3467778888888888887764443 467788888888888887766
Q ss_pred cccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-----CccccccccccccCcc
Q 037308 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPH 303 (321)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~ 303 (321)
.|..+. ++|+.|++++|+++.+|..+..+++|++|++++| .++.+| ..++++.+++.+..-.
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 655443 6899999999999999988889999999999999 888887 2346677777765433
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=221.91 Aligned_cols=240 Identities=16% Similarity=0.131 Sum_probs=166.8
Q ss_pred ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEec
Q 037308 11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKV 87 (321)
Q Consensus 11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l 87 (321)
+++++......+..|+.+++|++|++++|.+++.. ...+.. ++|++|++++|.+..++.. + .+++|++|++
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP------LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCcCCccC------cccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 34444444555567777888888888877654221 112233 5555555555554443221 2 4455555555
Q ss_pred cCCcccc------------------------ccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCC
Q 037308 88 PYSDIEQ------------------------LWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKS 142 (321)
Q Consensus 88 ~~~~l~~------------------------~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~ 142 (321)
++|.+.. ++. .+..+++|+. ++++.|.+.+..+. .+..+++|++|++++|..
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~-L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV-LRLRHLNINAIRDY--SFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE-EEEESCCCCEECTT--CSCSCTTCCEEEEECCTT
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE-EeCCCCcCcEeChh--hcccCcccceeeCCCCcc
Confidence 5554444 332 2344445555 55555555522222 567777778888877776
Q ss_pred CcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCccccccccc
Q 037308 143 LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSS 218 (321)
Q Consensus 143 ~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~ 218 (321)
.+.+|.......+|+.|++++|.. +.++.. .+++|+.|++++|.+++++. .+..+++|++|++++|.+.+..+..
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 666666555666999999999754 445532 57899999999999999774 4788999999999999999888889
Q ss_pred ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999999999999888877778899999999999999998
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.5e-27 Score=226.01 Aligned_cols=263 Identities=21% Similarity=0.199 Sum_probs=180.3
Q ss_pred EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308 9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL 85 (321)
Q Consensus 9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L 85 (321)
.||++++......+..|+++++|++|++++|.++ ...+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4566777666777788999999999999998744 344556666 899999999998876643 44 78999999
Q ss_pred eccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc--EEecC
Q 037308 86 KVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT--KLDLS 162 (321)
Q Consensus 86 ~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~--~L~l~ 162 (321)
++++|+++.+ +..+..+++|+. ++++.|.+. .++.+ .+..+++|++|++++|.+.+..|..++.+++|+ .++++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~-L~L~~n~l~-~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLES-LYLGSNHIS-SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCE-EECCSSCCC-CCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred eccccCcccCCcchhccCCcccE-EECCCCccc-ccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 9999998886 466788888888 999888888 44211 445588888888888876555455566666666 56666
Q ss_pred CCCCcccc------------------------------------------------------------------------
Q 037308 163 GCSKLKRL------------------------------------------------------------------------ 170 (321)
Q Consensus 163 ~~~~~~~~------------------------------------------------------------------------ 170 (321)
+|...+..
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 54322111
Q ss_pred --cc---cccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccc-ccC
Q 037308 171 --LE---ISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE-CLG 244 (321)
Q Consensus 171 --~~---~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~ 244 (321)
+. ..+++|++|++++|.++++|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 11 024567777777777777776677777777777777776666566666667777777776665544433 355
Q ss_pred CCCCCcEEEcccCCCccc---chhhhccCCcCEEeccCC
Q 037308 245 QLSSPIILNLAKTNVERI---PESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 245 ~~~~L~~L~l~~n~l~~l---~~~l~~l~~L~~L~l~~n 280 (321)
.+++|+.|++++|.++.+ +..+..+++|++|++++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 666666666666666533 344555666666666666
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.1e-27 Score=221.61 Aligned_cols=269 Identities=17% Similarity=0.129 Sum_probs=206.5
Q ss_pred eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC-CCCc--C-CcCcee
Q 037308 10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS-LPSN--L-SAEKLV 83 (321)
Q Consensus 10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~-~~~~--~-~l~~L~ 83 (321)
|+++++... ...+..|+.+++|++|++++|.++ ...+..+.. ++|++|++++|.+.. ++.. + .+++|+
T Consensus 59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred EECcCCcccceECcccccccccCCEEeCCCCccC------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 344444332 455677888999999999988754 233455666 888888888888764 2221 3 688888
Q ss_pred EEeccCCccccccc-C-CCCCCChHhHHhhccccccccCCCCCCCC----------------------------------
Q 037308 84 FLKVPYSDIEQLWN-G-EKHYSNLNQIINATCNKLIAKTPNPTLMP---------------------------------- 127 (321)
Q Consensus 84 ~L~l~~~~l~~~~~-~-~~~l~~L~~~l~l~~~~l~~~~~~~~~~~---------------------------------- 127 (321)
+|++++|.+..+.. . +..+++|+. ++++.|.+.+..+. .+.
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHV-LDLTFNKVKSICEE--DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCE-EECTTCCBSCCCTT--TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred EEECCCCccCccCcccccCCCCcccE-EeCCCCcccccChh--hhhccccccccccccccCcccccchhhcccccccccc
Confidence 88888888887643 2 667888888 88888887743332 222
Q ss_pred CCCCccEEEccCCCCCcccCcccc---------------------------------------CcccCcEEecCCCCCcc
Q 037308 128 HLNKLVILNLRGSKSLKSLPSGIF---------------------------------------NLEFLTKLDLSGCSKLK 168 (321)
Q Consensus 128 ~l~~L~~L~l~~n~~~~~~p~~l~---------------------------------------~l~~L~~L~l~~~~~~~ 168 (321)
.+++|++|++++|.+.+..|..+. ..++|+.|++++|...+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 346899999999876543332221 12578899999877655
Q ss_pred ccccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCC
Q 037308 169 RLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245 (321)
Q Consensus 169 ~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 245 (321)
..+.. .+++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..+..
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 55543 5789999999999999975 57889999999999999988888888999999999999999998888889999
Q ss_pred CCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccccc
Q 037308 246 LSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 246 ~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+++|+.|++++|+++.+|. .+..+++|++|++++|+.-.++|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999998885 56889999999999996655554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=6.7e-27 Score=224.05 Aligned_cols=282 Identities=16% Similarity=0.131 Sum_probs=218.9
Q ss_pred EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308 9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL 85 (321)
Q Consensus 9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L 85 (321)
.++++++......+..++.+++|++|++++|.++ ..+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 3455666666677777899999999999998754 33445555 899999999998877644 33 78899999
Q ss_pred eccCCccc-cccc-CCCCCCChHhHHhhccccccccC--CCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEec
Q 037308 86 KVPYSDIE-QLWN-GEKHYSNLNQIINATCNKLIAKT--PNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDL 161 (321)
Q Consensus 86 ~l~~~~l~-~~~~-~~~~l~~L~~~l~l~~~~l~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 161 (321)
++++|.+. .++. .+..+++|+. ++++.|.+.+.. +. .+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRE-LDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCE-EECCSSCCCEEEESTT--TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred ECCCCCcccccchhhhhccCcCCE-EECCCCccccccCcch--hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 99998876 3443 3678888888 999888887333 44 6888999999999999877677777888999999999
Q ss_pred CCCCCccccccc---ccCCccEEEecccccccc-ChhhhccCCCCeEecccCccccc---ccccccCCCCCCEEEecCCC
Q 037308 162 SGCSKLKRLLEI---SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKS---LPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 162 ~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~~~ 234 (321)
++|...+..+.. .+++|++|++++|.+... |..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 987655443322 477899999999998875 45678889999999999987762 22457889999999999998
Q ss_pred CCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc-----CccccccccccccCc
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSP 302 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~ 302 (321)
+.+..|..+..+++|+.|++++|+++ ..|..+..++.| +|++++| .++.++ ..++++.+++.++.-
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 88888888899999999999999998 455688888999 9999999 666654 235677888877443
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=8.8e-27 Score=208.22 Aligned_cols=237 Identities=18% Similarity=0.150 Sum_probs=133.9
Q ss_pred hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCC
Q 037308 24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY 102 (321)
Q Consensus 24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l 102 (321)
.+..+++|++|++++|.+++. +. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..+
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred hhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC
Confidence 477788888888888875432 11 444 7888888888887777654478888888888888777654 6677
Q ss_pred CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccC------
Q 037308 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------ 176 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------ 176 (321)
++|+. ++++.|......+ .+..+++|++|++++|.+. ..+. +..+++|+.|++++|......+...++
T Consensus 132 ~~L~~-L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 132 TKMYS-LNLGANHNLSDLS---PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205 (347)
T ss_dssp TTCCE-EECTTCTTCCCCG---GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred CceeE-EECCCCCCccccc---chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccccccccCCCccceee
Confidence 77777 7776664431332 4666667777777766533 3332 556666666666665432221111244
Q ss_pred ----------------CccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccc
Q 037308 177 ----------------NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLP 240 (321)
Q Consensus 177 ----------------~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 240 (321)
+|++|++++|.+++++. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence 44455555554444443 44444555555555443332 2344455555555555443332
Q ss_pred cccCCCCCCcEEEcccCCCccc-chhhhccCCcCEEeccCC
Q 037308 241 ECLGQLSSPIILNLAKTNVERI-PESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 241 ~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n 280 (321)
..+..+++|+.|++++|.++.. +..+..+++|++|++++|
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 2344555555555555555522 234455555555555555
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-27 Score=212.63 Aligned_cols=218 Identities=24% Similarity=0.314 Sum_probs=160.1
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
.+++.|+++++.+..+|..+ .+++|++|++++|.++.++..+..+++|+. ++++.|.++ .+|. .+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~-L~Ls~n~l~-~lp~--~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET-LTLARNPLR-ALPA--SIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSE-EEEESCCCC-CCCG--GGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCE-EECCCCccc-cCcH--HHhcCcCCCEEE
Confidence 67777777777777777765 677778888877777777766777777777 777777777 6665 677778888888
Q ss_pred ccCCCCCcccCccccC---------cccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEe
Q 037308 137 LRGSKSLKSLPSGIFN---------LEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLD 205 (321)
Q Consensus 137 l~~n~~~~~~p~~l~~---------l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 205 (321)
+++|.+.+.+|..+.. +++|++|++++|... .+|.. .+++|++|++++|.++++|..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 8887777777765543 677777777775433 44433 45677777777777777777777777778888
Q ss_pred cccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308 206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 206 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n 280 (321)
+++|.+.+.+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++..+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8777777777777777777888888777777777777777777888888777655 77777777777777777765
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1e-27 Score=226.99 Aligned_cols=282 Identities=17% Similarity=0.147 Sum_probs=204.5
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~ 86 (321)
||++++......+..++.+++|++|++++|.++ ...+..+.. ++|++|++++|.+..++.. + .+++|++|+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 455666555666678999999999999999754 233345666 8999999999999888775 4 799999999
Q ss_pred ccCCccccc--ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcc----------
Q 037308 87 VPYSDIEQL--WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLE---------- 154 (321)
Q Consensus 87 l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~---------- 154 (321)
+++|.++.+ +..+..+++|+. ++++.|.+.+.++. ..+..+++|++|++++|.+.+..|..+..++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQT-LRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccE-EECCCCccccccCH-hhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 999999854 467788889998 99988874336552 2688899999999999887766676665544
Q ss_pred --------------cCcEEecCCCCCcccc--cc----------------------------------------------
Q 037308 155 --------------FLTKLDLSGCSKLKRL--LE---------------------------------------------- 172 (321)
Q Consensus 155 --------------~L~~L~l~~~~~~~~~--~~---------------------------------------------- 172 (321)
+|++|++++|...+.. +.
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 4555555444322100 00
Q ss_pred --------------------------------------------cccCCccEEEeccccccccChhh-hccCCCCeEecc
Q 037308 173 --------------------------------------------ISSGNINWLFLRETAIEELPSSI-ERLLRLGHLDLS 207 (321)
Q Consensus 173 --------------------------------------------~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~ 207 (321)
...++|+.|++++|.++.+|..+ ..+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 00134566666666666677655 468889999999
Q ss_pred cCccccccc---ccccCCCCCCEEEecCCCCCCccc--cccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308 208 DCKRLKSLP---SSLFKLKSLGVLNLGGCSNLQRLP--ECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 208 ~n~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
+|.+.+..| ..++.+++|+.|++++|.+.+..+ ..+..+++|+.|++++|+++.+|..+..+++|++|++++| .
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N-~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-G 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS-C
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC-C
Confidence 888877654 236788889999998887765432 4577888899999999988888887778888888888888 6
Q ss_pred ccccc--Ccccccccccccc
Q 037308 283 IQSVS--LPLARGILEDTQR 300 (321)
Q Consensus 283 l~~~~--~~~~l~~l~~~~~ 300 (321)
++.++ .|++++.|+++++
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSS
T ss_pred cccccchhcCCceEEECCCC
Confidence 77776 6667777776665
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.4e-28 Score=215.55 Aligned_cols=217 Identities=19% Similarity=0.233 Sum_probs=105.1
Q ss_pred cccEEEecCCCCC---CCCCcC-CcCceeEEeccC-Cccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc
Q 037308 59 EVKYFHWHGYPLK---SLPSNL-SAEKLVFLKVPY-SDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL 132 (321)
Q Consensus 59 ~L~~l~l~~~~l~---~~~~~~-~l~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L 132 (321)
+++.++++++.+. .+|..+ .+++|++|++++ |.+. .++..+..+++|+. ++++.|.+++.+|. .+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~l~~~~p~--~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-LYITHTNVSGAIPD--FLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE-EEEEEECCEEECCG--GGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE-EECcCCeeCCcCCH--HHhCCCCC
Confidence 4445555554443 233333 445555555542 4443 23334444455555 55555555444443 44555555
Q ss_pred cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccC-CccEEEeccccccc-cChhhhccCCCCeEeccc
Q 037308 133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSG-NINWLFLRETAIEE-LPSSIERLLRLGHLDLSD 208 (321)
Q Consensus 133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~-~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~ 208 (321)
++|++++|.+.+.+|..+..+++|++|++++|...+.+|.. .+. +|++|++++|.+++ +|..+..+. |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 55555555544444444555555555555554433333322 122 45555555555542 444444443 55555555
Q ss_pred CcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308 209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n 280 (321)
|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 555544455555555555555555544444332 444555555555555555 44555555555555555555
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.4e-27 Score=227.26 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=218.3
Q ss_pred CceEEEEeecCchhhhccCh-hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-Cc
Q 037308 3 KKIEGICLDMSTVKEIRLNL-STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SA 79 (321)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l 79 (321)
++++.+.+ +++....++. ..++.+++|++|++++|.++|. .+ .+.. ++|+.|++++|.+..+|..+ .+
T Consensus 305 ~~L~~L~L--~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l 375 (636)
T 4eco_A 305 EKIQIIYI--GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK------LP-AFGSEIKLASLNLAYNQITEIPANFCGF 375 (636)
T ss_dssp GTCCEEEC--CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE------CC-CCEEEEEESEEECCSSEEEECCTTSEEE
T ss_pred CCCCEEEC--CCCcCCccCchhhhccCCCCCEEeCcCCcCccc------hh-hhCCCCCCCEEECCCCccccccHhhhhh
Confidence 34444444 3443333332 2788999999999999985533 33 4555 99999999999999998877 78
Q ss_pred Cc-eeEEeccCCcccccccCCCCCC--ChHhHHhhccccccccCCCCCCCC-------CCCCccEEEccCCCCCcccCcc
Q 037308 80 EK-LVFLKVPYSDIEQLWNGEKHYS--NLNQIINATCNKLIAKTPNPTLMP-------HLNKLVILNLRGSKSLKSLPSG 149 (321)
Q Consensus 80 ~~-L~~L~l~~~~l~~~~~~~~~l~--~L~~~l~l~~~~l~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~p~~ 149 (321)
++ |++|++++|.++.++..+.... +|+. ++++.|.+.+..|. .+. .+++|++|++++|.+. .+|..
T Consensus 376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~-L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 451 (636)
T 4eco_A 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSA-IDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQIS-KFPKE 451 (636)
T ss_dssp CTTCCEEECCSSCCSSCCSCCCTTCSSCEEE-EECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred cccCcEEEccCCcCcccchhhhhcccCccCE-EECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCccC-cCCHH
Confidence 88 9999999999998887766544 8999 99999999977765 666 7889999999999855 66654
Q ss_pred -ccCcccCcEEecCCCCCcccccccccC----------CccEEEeccccccccChhhh--ccCCCCeEecccCccccccc
Q 037308 150 -IFNLEFLTKLDLSGCSKLKRLLEISSG----------NINWLFLRETAIEELPSSIE--RLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 150 -l~~l~~L~~L~l~~~~~~~~~~~~~~~----------~L~~L~l~~~~i~~l~~~~~--~l~~L~~L~l~~n~~~~~~~ 216 (321)
+..+++|+.|++++|... .+|...+. +|+.|++++|.++.+|..+. .+++|++|++++|.+.+ +|
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 556999999999998655 56554222 89999999999999998876 99999999999999887 88
Q ss_pred ccccCCCCCCEEEec------CCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 217 SSLFKLKSLGVLNLG------GCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
..++.+++|+.|+++ +|.+.+.+|..+..+++|+.|++++|+++.+|..+. ++|++|++++| .+.++.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~~ 603 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDN-PNISID 603 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSC-TTCEEE
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCC-CCcccc
Confidence 889999999999994 567788899999999999999999999999997655 89999999999 555544
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=8.5e-26 Score=201.81 Aligned_cols=255 Identities=17% Similarity=0.205 Sum_probs=184.2
Q ss_pred hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCC
Q 037308 24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY 102 (321)
Q Consensus 24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l 102 (321)
.+.++++|++|++.++.+. ..+.+.. ++|++|++++|.+..++....+++|++|++++|.++.++ .+..+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~--------~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA--------SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC--------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred cchhcccccEEEEeCCccc--------cchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCC
Confidence 3556789999999998743 2234566 999999999999999887558999999999999999864 67899
Q ss_pred CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEE
Q 037308 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLF 182 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 182 (321)
++|++ ++++.|.+. .++ .+..+++|++|++++|......+. +..+++|++|++++|......+...+++|+.|+
T Consensus 110 ~~L~~-L~l~~n~i~-~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRE-LYLNEDNIS-DIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp TTCSE-EECTTSCCC-CCG---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CcCCE-EECcCCccc-Cch---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 99999 999999998 665 488999999999999976666555 889999999999998755443333688999999
Q ss_pred eccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308 183 LRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI 262 (321)
Q Consensus 183 l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 262 (321)
+++|.+.+++. +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 99999998775 6666677777777666554333 5566666666666655544322 55555666666666655554
Q ss_pred chhhhccCCcCEEeccCCCCccccc---Ccccccccccccc
Q 037308 263 PESIIQLFVLRYLLLSYSERIQSVS---LPLARGILEDTQR 300 (321)
Q Consensus 263 ~~~l~~l~~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~~ 300 (321)
+ .+..+++|++|++++| .++.++ ..++++.|++.++
T Consensus 259 ~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 259 N-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp G-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred h-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCC
Confidence 3 3455555555555555 444444 2344555555444
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.3e-26 Score=222.11 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=131.0
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc---------------------CCcCce
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN---------------------LSAEKL 82 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~---------------------~~l~~L 82 (321)
+..+++|++|++.+|.+.. .+.+.. ++|+.+++++|.++.+|.. ..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~--------l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC--------CCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred cccCCCCCEEEecCccchh--------hhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCC
Confidence 5556666666666665321 113333 5566666666655555533 134445
Q ss_pred eEEeccCCccccc---ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcE
Q 037308 83 VFLKVPYSDIEQL---WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTK 158 (321)
Q Consensus 83 ~~L~l~~~~l~~~---~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~ 158 (321)
++|++++|.++.. +..+..+++|+. ++++.|.+. .++. .+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~-L~L~~n~l~-~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRH-LDLSFNGAI-IMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCE-EECCSCSEE-EECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccE-eECCCCccc-cchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 5555555554443 233344455555 555555555 3443 45555555555555555444433 34555555666
Q ss_pred EecCCCCCccccccc--ccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308 159 LDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 159 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 234 (321)
|++++|...+..+.. .+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 666555443333322 34555566666555554 34445555566666666655555555555555666666666655
Q ss_pred CCCccccccCCCCCCcEEEcccCCCcccchhhhccC-CcCEEeccCCCCc
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLF-VLRYLLLSYSERI 283 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~-~L~~L~l~~n~~l 283 (321)
+.+..|..++.+++|+.|++++|+++.+|..+..++ +|++|++++|+..
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 555555555555666666666666555555555554 3566666655443
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.5e-27 Score=207.24 Aligned_cols=221 Identities=24% Similarity=0.289 Sum_probs=196.1
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
..++++.|++++|.++.++..++.+++|+. ++++.|.++ .+|. .+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~-L~L~~n~l~-~lp~--~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQH-MTIDAAGLM-ELPD--TMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSE-EEEESSCCC-CCCS--CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCE-EECCCCCcc-chhH--HHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 358899999999999999999999999999 999999999 8887 8999999999999999855 8898899999999
Q ss_pred EEecCCCCCcccccccc-----------cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308 158 KLDLSGCSKLKRLLEIS-----------SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~~-----------~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 226 (321)
+|++++|...+.+|... +++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..++.+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 99999988888777642 889999999999999999999999999999999999775 566789999999
Q ss_pred EEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc-CccccccccccccCccc
Q 037308 227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQRSPHM 304 (321)
Q Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~~~~~~ 304 (321)
.|++++|++.+.+|..++.+++|+.|++++|.+. .+|..+..+++|++|++++|+.++.+| ....+..+....+....
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999999999999999998766 889899999999999999999999988 44555555555444433
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.6e-26 Score=221.43 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=174.0
Q ss_pred CcccEEEecCCCCCCC---CCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCcc
Q 037308 58 AEVKYFHWHGYPLKSL---PSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLV 133 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~---~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~ 133 (321)
++|+++++++|.+..+ +..+ .+++|++|++++|.+..++..+..+++|+. ++++.|.+.+..+ ...+..+++|+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~-L~l~~n~l~~~~~-~~~~~~l~~L~ 427 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH-LDFQHSTLKRVTE-FSAFLSLEKLL 427 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE-EECTTSEEESTTT-TTTTTTCTTCC
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe-eECCCCccCCccC-hhhhhccccCC
Confidence 8889999988887655 4444 899999999999999999888899999999 9999999984444 23788999999
Q ss_pred EEEccCCCCCcccCccccCcccCcEEecCCCCCccc-cccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccC
Q 037308 134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR-LLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDC 209 (321)
Q Consensus 134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n 209 (321)
+|++++|.+.+..|..+..+++|++|++++|...+. .|.. .+++|++|++++|.+++++ ..+..+++|++|++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 999999998887888899999999999999876553 4433 5789999999999999865 56889999999999999
Q ss_pred cccccccccccCCCCCCEEEecCCCCCCccccccCCCC-CCcEEEcccCCCc
Q 037308 210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS-SPIILNLAKTNVE 260 (321)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 260 (321)
.+.+..|..++.+++|+.|++++|.+. .+|..+..++ +|+.|++++|.+.
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 999988999999999999999998866 6777788887 6999999999998
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-26 Score=204.61 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=214.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecC-CCCC-CCCCcC-CcCceeEEeccCCccc-ccccCCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHG-YPLK-SLPSNL-SAEKLVFLKVPYSDIE-QLWNGEKHYS 103 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~-~~l~-~~~~~~-~l~~L~~L~l~~~~l~-~~~~~~~~l~ 103 (321)
.++++|++++|.+++. ...+..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.++ .++..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5899999999987641 133455666 9999999995 7664 677766 8999999999999998 5677789999
Q ss_pred ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcc-cCcEEecCCCCCccccccc-ccCCccEE
Q 037308 104 NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLLEI-SSGNINWL 181 (321)
Q Consensus 104 ~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~-~~~~L~~L 181 (321)
+|+. ++++.|.+.+.+|. .+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|...+..|.. ...+|++|
T Consensus 126 ~L~~-L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L 202 (313)
T 1ogq_A 126 TLVT-LDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202 (313)
T ss_dssp TCCE-EECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred CCCE-EeCCCCccCCcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence 9999 99999999977776 899999999999999998778998898998 9999999998766565554 22249999
Q ss_pred Eeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 182 FLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 182 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
++++|.+++ .|..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 999999997 556688999999999999998877666 788999999999999999899999999999999999999999
Q ss_pred -ccchhhhccCCcCEEeccCCCCccccc
Q 037308 261 -RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 261 -~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
.+|.. ..+++|+.+++.+|+.+...|
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ccCCCC-ccccccChHHhcCCCCccCCC
Confidence 77765 789999999999998787755
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.4e-25 Score=199.07 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=111.9
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
++++.|++++|.+..++.. + .+++|++|++++|.++.+ +..+..+++|+. ++++.|.++ .+|. .+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~-~l~~--~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER-LYLSKNQLK-ELPE--KMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE-EECCSSCCS-BCCS--SCC--TTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE-EECCCCcCC-ccCh--hhc--ccccE
Confidence 4555555555555554442 2 455555555555555554 334455555555 555555555 4443 221 45555
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCcc--ccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCc
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCK 210 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~ 210 (321)
|++++|.+.+..+..+.++++|+.|++++|.... ..+.. .+++|++|++++|.++.+|..+. ++|++|++++|.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc
Confidence 5555555333333334555555555555543321 11111 24455555555555555554322 455555555555
Q ss_pred ccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.++
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 5544444555555555555555555444444455555555555555555555555555555555555555 444443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.8e-25 Score=207.66 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=100.7
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCC
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS 103 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 103 (321)
+..+++|++|++++|.+++.. . +.. ++|++|++++|.+..++....+++|++|++++|.++.++. +..++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-------P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hhhhcCCCEEECCCCccCCch-------h-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 555666666666666543221 1 223 5555555555555444442245555555555555544432 44444
Q ss_pred ChHhHHhhccccccccCCC------------------CCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308 104 NLNQIINATCNKLIAKTPN------------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS 165 (321)
Q Consensus 104 ~L~~~l~l~~~~l~~~~~~------------------~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~ 165 (321)
+|+. ++++.|.+. .++. ...+..+++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus 135 ~L~~-L~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 135 NLNR-LELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQ 210 (466)
T ss_dssp TCSE-EEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSC
T ss_pred CCCE-EECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChh-hccCCCCCEEEecCCc
Confidence 4444 444444443 2110 002445566666666666532 2232 5556666666666554
Q ss_pred CcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCC
Q 037308 166 KLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245 (321)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 245 (321)
..+..+...+++|+.|++++|.+++++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 333322223455555555555555443 24444455555555544433222 3444444444444443333221 333
Q ss_pred CCCCcEEEcccCCCc
Q 037308 246 LSSPIILNLAKTNVE 260 (321)
Q Consensus 246 ~~~L~~L~l~~n~l~ 260 (321)
+++|+.|++++|+++
T Consensus 286 l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 286 LTALTNLELNENQLE 300 (466)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred CCccCeEEcCCCccc
Confidence 444444444444443
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=3.6e-25 Score=196.55 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=200.9
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEeccCCcccccccCCCCCCCh
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNL 105 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L 105 (321)
+++++|++++|.+++. ....+.. ++|++|++++|.+..+ |..+ .+++|++|++++|.++.++.... ++|
T Consensus 52 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 6899999999986532 2234565 9999999999999887 5555 89999999999999998876654 788
Q ss_pred HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc--ccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308 106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL 183 (321)
Q Consensus 106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 183 (321)
+. ++++.|.+. .++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|. ++.+|....++|++|++
T Consensus 124 ~~-L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 124 QE-LRVHENEIT-KVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL 199 (330)
T ss_dssp CE-EECCSSCCC-BBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred cE-EECCCCccc-ccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence 88 999999998 5442 157899999999999998643 556678899999999999975 44566555689999999
Q ss_pred ccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308 184 RETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI 262 (321)
Q Consensus 184 ~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 262 (321)
++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 999999874 67889999999999999988877778999999999999998765 7788899999999999999999987
Q ss_pred ch-hhh------ccCCcCEEeccCCCC
Q 037308 263 PE-SII------QLFVLRYLLLSYSER 282 (321)
Q Consensus 263 ~~-~l~------~l~~L~~L~l~~n~~ 282 (321)
+. .+. ..+.++.+++.+|+.
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ChhhcCCcccccccccccceEeecCcc
Confidence 74 332 247889999999953
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-25 Score=221.73 Aligned_cols=249 Identities=15% Similarity=0.124 Sum_probs=193.9
Q ss_pred hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCc-eeEEeccCCcccccccCCC
Q 037308 24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEK-LVFLKVPYSDIEQLWNGEK 100 (321)
Q Consensus 24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~-L~~L~l~~~~l~~~~~~~~ 100 (321)
.++.+++|++|++++|.++ ..+ .+.. ++|+.|++++|.+..+|..+ .+++ |+.|++++|.++.++..+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred hhhcCCCCCEEECCCCCcc-------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 5777777888887777643 222 4555 78888888888887777665 6777 8888888888887776655
Q ss_pred CCCC--hHhHHhhccccccccCCCC-CCCC--CCCCccEEEccCCCCCcccCccc-cCcccCcEEecCCCCCcccccccc
Q 037308 101 HYSN--LNQIINATCNKLIAKTPNP-TLMP--HLNKLVILNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLLEIS 174 (321)
Q Consensus 101 ~l~~--L~~~l~l~~~~l~~~~~~~-~~~~--~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~~~~~ 174 (321)
..+. |+. ++++.|.+.+.+|.. ..+. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|... .+|...
T Consensus 640 ~~~~~~L~~-L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 640 AKSVYVMGS-VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp TTCSSCEEE-EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred ccccCCCCE-EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 5543 777 888888887544420 0122 3458899999998854 666544 47899999999997544 565542
Q ss_pred c----------CCccEEEeccccccccChhhh--ccCCCCeEecccCcccccccccccCCCCCCEEEecC------CCCC
Q 037308 175 S----------GNINWLFLRETAIEELPSSIE--RLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG------CSNL 236 (321)
Q Consensus 175 ~----------~~L~~L~l~~~~i~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~------~~~~ 236 (321)
+ ++|+.|++++|.++.+|..+. .+++|+.|++++|.+.+ +|..++.+++|+.|++++ |.+.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 2 289999999999999998886 89999999999999887 788899999999999976 7778
Q ss_pred CccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+.+|..+..+++|+.|++++|++..+|..+. ++|+.|++++| .+..+.
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N-~l~~i~ 843 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN-PNISID 843 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSC-TTCEEE
T ss_pred ccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCC-CCCccC
Confidence 8899999999999999999999999998654 79999999999 555543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=8.9e-26 Score=224.08 Aligned_cols=283 Identities=17% Similarity=0.123 Sum_probs=198.3
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~ 86 (321)
||++++......+..|+.+++|++|++++|...+ ...+..+.. ++|++|++++|.+..+ |..+ ++++|++|+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCcc-----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 3445555556666778888888888888875221 122455666 8888888888888765 4455 788888888
Q ss_pred ccCCcccc-cccC--CCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCc--cc------
Q 037308 87 VPYSDIEQ-LWNG--EKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNL--EF------ 155 (321)
Q Consensus 87 l~~~~l~~-~~~~--~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l--~~------ 155 (321)
+++|.+.. ++.. +..+++|+. |+++.|.+. ..+.+..+..+++|++|++++|.+.+..+..+..+ ++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~-L~Ls~N~l~-~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTR-LDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCE-EEEESCCCC-CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred CcCCCCCcccccCccccccCCCCE-EECCCCccc-ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 88888875 2332 678888888 888888887 43322257788888888888887655444433322 22
Q ss_pred ------------------------CcEEecCCCCCccccccc--------------------------------------
Q 037308 156 ------------------------LTKLDLSGCSKLKRLLEI-------------------------------------- 173 (321)
Q Consensus 156 ------------------------L~~L~l~~~~~~~~~~~~-------------------------------------- 173 (321)
|+.|++++|......+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 666666665321111100
Q ss_pred --ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCc
Q 037308 174 --SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPI 250 (321)
Q Consensus 174 --~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 250 (321)
..++|+.|++++|.+.+++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1256778888888877754 4577788888888888888777777788888888888888887777777888888888
Q ss_pred EEEcccCCCcccch-hhhccCCcCEEeccCCCCcccccCcccccccccccc
Q 037308 251 ILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQR 300 (321)
Q Consensus 251 ~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~~~~~l~~l~~~~~ 300 (321)
.|++++|.++.++. .+..+++|++|++++| .++.++..++++.+++.++
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGN 391 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSSCCSCSEEEEESC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccCCCCcchhccCCC
Confidence 88888888886664 5677888888888888 7777765566666666554
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1e-25 Score=204.55 Aligned_cols=260 Identities=13% Similarity=0.054 Sum_probs=204.4
Q ss_pred CCCCceEEEEeecCCCCccccceeccCC-CCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccccc-CCCC
Q 037308 27 KMPKLRFLKFYSSSFNGENKCKVSYLQD-PRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWN-GEKH 101 (321)
Q Consensus 27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~-~~~~ 101 (321)
.++++++|++.+|.++ ..+.. +.. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..
T Consensus 43 ~l~~l~~l~l~~~~l~-------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCchh-------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 3589999999998632 23332 344 899999999999988776 34 89999999999999998864 4688
Q ss_pred CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccE-
Q 037308 102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINW- 180 (321)
Q Consensus 102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~- 180 (321)
+++|+. ++++.|.++ .++. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.... .+...+++|+.
T Consensus 116 l~~L~~-L~L~~n~l~-~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTV-LVLERNDLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA 191 (390)
T ss_dssp CTTCCE-EECCSSCCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEE
T ss_pred CCCCCE-EECCCCccC-cCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccccccccccee
Confidence 999999 999999999 7774 246899999999999999776667779999999999999976433 23223455555
Q ss_pred ------------------EEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccc
Q 037308 181 ------------------LFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC 242 (321)
Q Consensus 181 ------------------L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 242 (321)
|++++|.+..+|.. ..++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 45555555444422 235788888888887653 46788999999999999888888889
Q ss_pred cCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccCc
Q 037308 243 LGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRSP 302 (321)
Q Consensus 243 ~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~~ 302 (321)
+..+++|+.|++++|+++.+|..+..+++|++|++++| .++.+| ..++++.|++.++.-
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc
Confidence 99999999999999999988877788999999999999 787776 235777777776543
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.3e-25 Score=197.94 Aligned_cols=240 Identities=17% Similarity=0.154 Sum_probs=199.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCC-CcC-CcCceeEEeccCCcccccccCCCCCCCh
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLP-SNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNL 105 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~-~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L 105 (321)
++|++|++++|.++ ...+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.++.++.... ++|
T Consensus 54 ~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 68999999999754 223345666 99999999999998774 445 79999999999999998877655 789
Q ss_pred HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC--cccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308 106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL 183 (321)
Q Consensus 106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 183 (321)
++ ++++.|.+. .++. ..+..+++|++|++++|.+. +..|..+..+ +|+.|++++|. ++.+|....++|++|++
T Consensus 126 ~~-L~l~~n~i~-~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 126 VE-LRIHDNRIR-KVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHL 200 (332)
T ss_dssp CE-EECCSSCCC-CCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBC
T ss_pred CE-EECCCCccC-ccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEEC
Confidence 88 999999998 6653 25889999999999999864 3556667777 99999999976 44566555689999999
Q ss_pred ccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308 184 RETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI 262 (321)
Q Consensus 184 ~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 262 (321)
++|.+++++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 999999977 56889999999999999988877778999999999999998766 7888899999999999999999987
Q ss_pred ch-hhhc------cCCcCEEeccCCCC
Q 037308 263 PE-SIIQ------LFVLRYLLLSYSER 282 (321)
Q Consensus 263 ~~-~l~~------l~~L~~L~l~~n~~ 282 (321)
+. .+.. .+.|+.|++.+|+.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHccccccccccccccceEeecCcc
Confidence 74 3332 46789999999953
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.2e-26 Score=214.69 Aligned_cols=278 Identities=16% Similarity=0.157 Sum_probs=169.2
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP 88 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~ 88 (321)
||++++......+..+..+++|++|++++|.++ ...+..+.. ++|++|++++|.+..+|.. .+++|++|+++
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLS 98 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccC------CcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEecc
Confidence 455566555666677888888888888888754 223445555 8888888888888888777 88888899998
Q ss_pred CCccccc--ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc--cEEEccCCCC--CcccCccccC----------
Q 037308 89 YSDIEQL--WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL--VILNLRGSKS--LKSLPSGIFN---------- 152 (321)
Q Consensus 89 ~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~p~~l~~---------- 152 (321)
+|.++.+ +..++.+++|+. ++++.|.+++ . .+..+++| ++|++++|.+ .+..|..+..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~-L~L~~n~l~~---~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKF-LGLSTTHLEK---S--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCE-EEEEESSCCG---G--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred CCccccccchhhhccCCcceE-EEecCcccch---h--hccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 8888763 467788888888 8888888873 1 45666677 8888888876 4444444433
Q ss_pred ----------------cccCcEEecCCCC------------------------------Cccc----ccc-cccCCccEE
Q 037308 153 ----------------LEFLTKLDLSGCS------------------------------KLKR----LLE-ISSGNINWL 181 (321)
Q Consensus 153 ----------------l~~L~~L~l~~~~------------------------------~~~~----~~~-~~~~~L~~L 181 (321)
+++|+.+++++|. ..+. ++. ...++|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 3333333333321 0000 000 001123333
Q ss_pred Eecccccc-ccChhh-----------------------------------------------------hccCCCCeEecc
Q 037308 182 FLRETAIE-ELPSSI-----------------------------------------------------ERLLRLGHLDLS 207 (321)
Q Consensus 182 ~l~~~~i~-~l~~~~-----------------------------------------------------~~l~~L~~L~l~ 207 (321)
++++|.++ .+|..+ ..+++|++|+++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 33333322 121111 345667777777
Q ss_pred cCcccccccccccCCCCCCEEEecCCCCCC--ccccccCCCCCCcEEEcccCCCcc-cchh-hhccCCcCEEeccCCCCc
Q 037308 208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ--RLPECLGQLSSPIILNLAKTNVER-IPES-IIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~-l~~~-l~~l~~L~~L~l~~n~~l 283 (321)
+|.+.+..|..++.+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.++. +|.. +..+++|++|++++|..-
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 777666666666677777777777766654 445566667777777777777764 6643 455566666666666322
Q ss_pred cccc--Ccccccccccccc
Q 037308 284 QSVS--LPLARGILEDTQR 300 (321)
Q Consensus 284 ~~~~--~~~~l~~l~~~~~ 300 (321)
..++ ++++++.|++.++
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp GGGGGSCCTTCCEEECCSS
T ss_pred cchhhhhcccCCEEECCCC
Confidence 3333 3345555555554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6e-25 Score=204.19 Aligned_cols=270 Identities=17% Similarity=0.173 Sum_probs=215.2
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP 88 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~ 88 (321)
||++++......+ ++.+++|++|++++|.+++.. . +.. ++|++|++++|.+..++....+++|++|+++
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-------P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 142 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccccCh-------h-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence 3445554444432 899999999999999755321 1 555 9999999999999988875589999999999
Q ss_pred CCccccccc--------------------CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc
Q 037308 89 YSDIEQLWN--------------------GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS 148 (321)
Q Consensus 89 ~~~l~~~~~--------------------~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 148 (321)
+|.+..++. .+..+++|+. ++++.|.+. .++ .+..+++|++|++++|.+.+..|
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER-LDISSNKVS-DIS---VLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE-EECCSSCCC-CCG---GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCE-EECcCCcCC-CCh---hhccCCCCCEEEecCCccccccc-
Confidence 998877532 1345566777 888888887 554 57889999999999998555444
Q ss_pred cccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308 149 GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV 227 (321)
Q Consensus 149 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 227 (321)
++.+++|+.|++++|...+ ++.. .+++|++|++++|.+++++. +..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 217 -~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 7789999999999976443 3333 58899999999999998876 8889999999999999776544 789999999
Q ss_pred EEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc---CccccccccccccCccc
Q 037308 228 LNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS---LPLARGILEDTQRSPHM 304 (321)
Q Consensus 228 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~~~~~~ 304 (321)
|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++| .++.++ ..++++.|++.++.-..
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCc
Confidence 9999998776543 7889999999999999997765 788999999999999 777776 44678888888765443
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=212.41 Aligned_cols=126 Identities=20% Similarity=0.250 Sum_probs=97.1
Q ss_pred cCCccEEEeccccccccCh--hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCCCCCcE
Q 037308 175 SGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQLSSPII 251 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~ 251 (321)
+++|+.|++++|.+.+.+. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 5566666666666665432 4667778888888888777777777888888888888888776 467788889999999
Q ss_pred EEcccCCCccc-chhhhccCCcCEEeccCCCCccccc-----CccccccccccccC
Q 037308 252 LNLAKTNVERI-PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRS 301 (321)
Q Consensus 252 L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~ 301 (321)
|++++|+++.+ |..+..+++|++|++++| .++.++ ..++++.+++.++.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999966 678888999999999999 777765 23567777777744
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.5e-25 Score=197.79 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=210.1
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccc-ccCCCCCCCh
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQL-WNGEKHYSNL 105 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L 105 (321)
.+++.++++++.++ ..+..+ .++|+.|++++|.+..++. .+ .+++|++|++++|.++.+ +..+..+++|
T Consensus 33 c~l~~l~~~~~~l~-------~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-------AVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCS-------SCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCcc-------ccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 37999999887643 122222 2789999999999988765 34 899999999999999987 5678899999
Q ss_pred HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcc--ccccc-ccCCccEEE
Q 037308 106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLLEI-SSGNINWLF 182 (321)
Q Consensus 106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~ 182 (321)
+. ++++.|.++ .+|. .+. ++|++|++++|.+....+..+..+++|+.|++++|.... ..+.. ...+|++|+
T Consensus 105 ~~-L~L~~n~l~-~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 105 QK-LYISKNHLV-EIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CE-EECCSSCCC-SCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CE-EECCCCcCC-ccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 99 999999999 8875 443 899999999999655445568899999999999986532 22222 112899999
Q ss_pred eccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308 183 LRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI 262 (321)
Q Consensus 183 l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 262 (321)
+++|.++++|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+
T Consensus 179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence 99999999987654 7899999999998888878899999999999999998888777899999999999999999999
Q ss_pred chhhhccCCcCEEeccCCCCccccc---C--------ccccccccccccC
Q 037308 263 PESIIQLFVLRYLLLSYSERIQSVS---L--------PLARGILEDTQRS 301 (321)
Q Consensus 263 ~~~l~~l~~L~~L~l~~n~~l~~~~---~--------~~~l~~l~~~~~~ 301 (321)
|..+..+++|++|++++| .++.++ . ...++.+++.+..
T Consensus 257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 999999999999999999 788876 1 2345666666543
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=213.29 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=79.5
Q ss_pred CccEEEeccccccccChhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc
Q 037308 177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA 255 (321)
Q Consensus 177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 255 (321)
+|++|++++|.+.+++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+.++++|+.|+++
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 3444444444444433334445555555555555444433 346667777777777777766677777788888888888
Q ss_pred cCCCc--ccchhhhccCCcCEEeccCCCCcccc-c----CccccccccccccC
Q 037308 256 KTNVE--RIPESIIQLFVLRYLLLSYSERIQSV-S----LPLARGILEDTQRS 301 (321)
Q Consensus 256 ~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~-~----~~~~l~~l~~~~~~ 301 (321)
+|.++ .+|..+..+++|++|++++| .++.+ | ..++++.|++.++.
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc
Confidence 88876 57777788888888888888 56555 3 23567777776653
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=221.16 Aligned_cols=280 Identities=15% Similarity=0.157 Sum_probs=202.3
Q ss_pred eecCch-hhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC-CCCc--C-CcCcee
Q 037308 10 LDMSTV-KEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS-LPSN--L-SAEKLV 83 (321)
Q Consensus 10 l~~~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~-~~~~--~-~l~~L~ 83 (321)
||++++ ....+.+.+|+.+++|++|++++|.++ ...+..+.. ++|++|++++|.+.. ++.. + .+++|+
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~------~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC------EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc------ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 344444 234555677888888888888887744 233445555 777777777776654 3332 3 677777
Q ss_pred EEeccCCcccccc--cCCCCCCChHhHHhhcccccc--------------------------ccCCCCCCCCCCC-----
Q 037308 84 FLKVPYSDIEQLW--NGEKHYSNLNQIINATCNKLI--------------------------AKTPNPTLMPHLN----- 130 (321)
Q Consensus 84 ~L~l~~~~l~~~~--~~~~~l~~L~~~l~l~~~~l~--------------------------~~~~~~~~~~~l~----- 130 (321)
+|++++|.+..+. ..+..+++|+. |+++.|.+. +..+. .+..+.
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~-L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~ 203 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKS-IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCMNPFRN 203 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCE-EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSSCTTTT
T ss_pred EEECCCCcccccccchhHhhCCCCCE-EECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc--chhhcCCcccc
Confidence 7777777766543 24566666666 666555554 22222 333333
Q ss_pred -CccEEEccCCCCCcccCcccc------------------------------------C--cccCcEEecCCCCCccccc
Q 037308 131 -KLVILNLRGSKSLKSLPSGIF------------------------------------N--LEFLTKLDLSGCSKLKRLL 171 (321)
Q Consensus 131 -~L~~L~l~~n~~~~~~p~~l~------------------------------------~--l~~L~~L~l~~~~~~~~~~ 171 (321)
.|+.|++++|.+.+..+..+. . .++|+.|++++|...+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 389999999865544333221 1 2689999999977554444
Q ss_pred cc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCC
Q 037308 172 EI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSS 248 (321)
Q Consensus 172 ~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 248 (321)
.. .+++|+.|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 33 4789999999999999865 56889999999999999988888889999999999999999887777778999999
Q ss_pred CcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-CccccccccccccCcc
Q 037308 249 PIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQRSPH 303 (321)
Q Consensus 249 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~~~~~ 303 (321)
|+.|++++|.++.++. +++|++|++++| .+..+| .+.+++.+++....-.
T Consensus 364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp CCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCC
T ss_pred CCEEECCCCCCCcccC----CCCcchhccCCC-CcccccccccccceeecccCccc
Confidence 9999999999997764 789999999999 888888 6677888887775444
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=9.4e-25 Score=211.92 Aligned_cols=285 Identities=20% Similarity=0.147 Sum_probs=164.7
Q ss_pred ecCchhhhccChhhhcCCCCceEEEEeecCCCCcccccee-----------------------cc----CCCCc-CcccE
Q 037308 11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVS-----------------------YL----QDPRF-AEVKY 62 (321)
Q Consensus 11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------~~----~~l~~-~~L~~ 62 (321)
+++++......+..++.+++|++|++++|.+++..+.... .+ ..+.. ++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 3444444444556677788888888888775543221100 00 02333 66777
Q ss_pred EEecCCCCCCCCCc-C-CcCceeEEeccCCccc--ccccC-CC--CCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308 63 FHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIE--QLWNG-EK--HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL 135 (321)
Q Consensus 63 l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~--~~~~~-~~--~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L 135 (321)
+++++|.+..++.. + .+++|++|++++|.+. .++.. +. ..+.++. ++++.|.+.+..+. .+..+++|++|
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~L 410 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESD--AFSWLGHLEVL 410 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE-EECTTSCCCEECTT--TTTTCTTCCEE
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce-EECCCCCCCeEChh--hhhCCCCCCEE
Confidence 77777766555443 2 5666666666555421 11110 00 1123333 44444444422232 45555555555
Q ss_pred EccCCCCCcccC-ccccCcccCcEEecCCCC------------------------Cc--cccccc--ccCCccEEEeccc
Q 037308 136 NLRGSKSLKSLP-SGIFNLEFLTKLDLSGCS------------------------KL--KRLLEI--SSGNINWLFLRET 186 (321)
Q Consensus 136 ~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~------------------------~~--~~~~~~--~~~~L~~L~l~~~ 186 (321)
++++|.+.+.+| ..+..+++|+.|++++|. .. +..|.. .+++|++|++++|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 555555443333 234445555555555443 21 122222 3567778888888
Q ss_pred cccccCh-hhhccCCCCeEecccCccccccc--------ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC
Q 037308 187 AIEELPS-SIERLLRLGHLDLSDCKRLKSLP--------SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT 257 (321)
Q Consensus 187 ~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 257 (321)
.+++++. .+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.+....+..|.++++|+.|++++|
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 8777664 36777788888888877654311 23667788888888887766443346788888888888888
Q ss_pred CCcccchh-hhccCCcCEEeccCCCCccccc---C---ccccccccccc
Q 037308 258 NVERIPES-IIQLFVLRYLLLSYSERIQSVS---L---PLARGILEDTQ 299 (321)
Q Consensus 258 ~l~~l~~~-l~~l~~L~~L~l~~n~~l~~~~---~---~~~l~~l~~~~ 299 (321)
+++.+|.. +..+++|++|++++| .++.++ . .++++.+++.+
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 88877754 567888888888888 777765 1 25677777765
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4.7e-25 Score=214.01 Aligned_cols=238 Identities=19% Similarity=0.111 Sum_probs=146.6
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~ 86 (321)
||++++......+..|+.+++|++|++++|.+++.. +..+.. ++|++|++++|.+..+|.. + .+++|++|+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE------PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC------TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC------HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 445555555666677888888999998888755322 233444 8888888888888888764 3 788888888
Q ss_pred ccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc--CcccCcEEecCC
Q 037308 87 VPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF--NLEFLTKLDLSG 163 (321)
Q Consensus 87 l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~--~l~~L~~L~l~~ 163 (321)
+++|.+..++ ..+..+++|+. ++++.|.+.+..+. .+..+++|++|++++|.+.+..+..+. .+++|+.|++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLIT-LDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCE-EECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCCCccCccChhHccccCCCCE-EECCCCcccccCch--hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 8888888776 45778888888 88888888744444 677888888888888875544443332 346777777777
Q ss_pred CCCccccccc-----------------------------ccCCccEEEeccccccccC-hhhhccC--CCCeEecccCcc
Q 037308 164 CSKLKRLLEI-----------------------------SSGNINWLFLRETAIEELP-SSIERLL--RLGHLDLSDCKR 211 (321)
Q Consensus 164 ~~~~~~~~~~-----------------------------~~~~L~~L~l~~~~i~~l~-~~~~~l~--~L~~L~l~~n~~ 211 (321)
|...+..+.. ..++|+.|++++|.+++++ ..+..++ +|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 6432221110 0134455555555555432 2343332 255555555555
Q ss_pred cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308 212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK 256 (321)
Q Consensus 212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 256 (321)
.+..+..++.+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 554445555555555555555555444444444444444444433
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.7e-25 Score=210.29 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=104.0
Q ss_pred EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308 9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL 85 (321)
Q Consensus 9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L 85 (321)
.+|++++....++... .++|++|++++|.+++. .+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus 35 ~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL---PPRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp EEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred EEEcCCCCCccCCCCC---CCCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4666666555544322 27899999999986532 2234555 999999999999988744 44 79999999
Q ss_pred eccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccC--cEEecCC
Q 037308 86 KVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFL--TKLDLSG 163 (321)
Q Consensus 86 ~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L--~~L~l~~ 163 (321)
++++|+++.++.. .+++|+. ++++.|.+. .++.+..+..+++|++|++++|.+... .+..+++| +.|+++.
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~-L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRH-LDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSE-EECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCCccCcc--ccccCCE-EECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 9999999988776 8899999 999999998 554223789999999999999985432 23344444 6666655
Q ss_pred CC
Q 037308 164 CS 165 (321)
Q Consensus 164 ~~ 165 (321)
|.
T Consensus 179 n~ 180 (562)
T 3a79_B 179 VS 180 (562)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.3e-24 Score=201.15 Aligned_cols=232 Identities=18% Similarity=0.140 Sum_probs=110.9
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCC
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS 103 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 103 (321)
++.+++|++|++++|.+++. + +.. ++|++|++++|.+..++ ...+++|++|++++|+++.++ +..++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~--------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL--------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC--------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred hcccCCCCEEEccCCcCCeE--------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 44455555555555543321 0 222 55555555555554443 224555555555555555432 44455
Q ss_pred ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308 104 NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL 183 (321)
Q Consensus 104 ~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 183 (321)
+|+. ++++.|.++ .+ .+..+++|++|++++|...+.++ +..+++|+.|++++|.. +.++...+++|+.|++
T Consensus 128 ~L~~-L~l~~N~l~-~l----~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l-~~l~l~~l~~L~~L~l 198 (457)
T 3bz5_A 128 LLTY-LNCARNTLT-EI----DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-TELDVSQNKLLNRLNC 198 (457)
T ss_dssp TCCE-EECTTSCCS-CC----CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCC-CCCCCTTCTTCCEEEC
T ss_pred cCCE-EECCCCccc-ee----ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCcc-ceeccccCCCCCEEEC
Confidence 5555 555555554 22 23445555555555554343332 44555555555555432 2233223455555555
Q ss_pred ccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc---
Q 037308 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE--- 260 (321)
Q Consensus 184 ~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--- 260 (321)
++|.+++++ +..+++|++|++++|.+.+ +| ++.+++|+.|++++|.+.+.. ++.+++|+.|+++.|.++
T Consensus 199 ~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 199 DTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp CSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCC
T ss_pred cCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEE
Confidence 555555543 4445555555555555444 23 445555555555555544432 223333333333333332
Q ss_pred --------ccchhhhccCCcCEEeccCCCCccccc
Q 037308 261 --------RIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 261 --------~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
.+| ...+++|++|++++|+.++.+|
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 122 2345666666666665555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.5e-25 Score=210.47 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=206.0
Q ss_pred CCCceEEEEeecCCCCccccceeccCC-CCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCcccccccC-CCCC
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQD-PRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWNG-EKHY 102 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~~-~~~l 102 (321)
+++++.+++.+|.++ ..+.. +.. ++|++|++++|.+..++. .+ .+++|++|++++|.+..++.. +..+
T Consensus 50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 578999999988633 23332 343 899999999999988775 34 899999999999999988654 5889
Q ss_pred CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEE
Q 037308 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLF 182 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 182 (321)
++|+. |++++|.++ .+|. ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.... ++...+++|+.|+
T Consensus 123 ~~L~~-L~L~~n~l~-~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PLLTV-LVLERNDLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHAN 198 (597)
T ss_dssp TTCCE-EECCSSCCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEE
T ss_pred CCCCE-EEeeCCCCC-CCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhh
Confidence 99999 999999999 7664 246899999999999999777777779999999999999976443 3333355555555
Q ss_pred ecccccc-------------------ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccccc
Q 037308 183 LRETAIE-------------------ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL 243 (321)
Q Consensus 183 l~~~~i~-------------------~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 243 (321)
+++|.++ .++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 5555444 433221 2578888888888765 3568899999999999999988888999
Q ss_pred CCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccCc
Q 037308 244 GQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRSP 302 (321)
Q Consensus 244 ~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~~ 302 (321)
+.+++|+.|++++|.++.+|..+..+++|++|++++| .+..+| ..++++.|++.++.-
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 9999999999999999999887888999999999999 777877 346778887777543
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=199.00 Aligned_cols=222 Identities=23% Similarity=0.256 Sum_probs=189.0
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
++++.|++++|.+..++.. + ++++|++|++++|.++.+. ..+..+++|+. |+++.|.++ .++. ..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT-LELFDNRLT-TIPN-GAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE-EECCSSCCS-SCCT-TTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE-EECCCCcCC-eeCH-hHhhccccCce
Confidence 7889999999998877643 3 7999999999999998876 46778899999 999999998 6552 26888999999
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcc
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKR 211 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~ 211 (321)
|++++|.+....+..|..+++|+.|++++|..++.++.. .+++|++|++++|.++++|. +..+++|++|++++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence 999999865554557889999999999998777766653 47889999999999999884 77889999999999998
Q ss_pred cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308 212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l 283 (321)
.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. .+..+++|++|++++|+.-
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888889999999999999999888888889999999999999999998874 5678899999999998653
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.3e-24 Score=201.11 Aligned_cols=221 Identities=23% Similarity=0.234 Sum_probs=187.9
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
+++++|++++|.+..++.. + .+++|++|++++|.++.+. ..+..+++|+. |+++.|.++ .++. ..+..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT-LELFDNWLT-VIPS-GAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCS-BCCT-TTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE-EECCCCcCC-ccCh-hhhcccCCCCE
Confidence 7899999999998877543 4 7999999999999998876 56778899999 999999998 5553 25888999999
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcc
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKR 211 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~ 211 (321)
|++++|.+....+..|..+++|+.|++++|..++.++.. .+++|++|++++|.++++|. +..+++|++|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcC
Confidence 999999865444556888999999999998777776653 47789999999999999874 77888999999999998
Q ss_pred cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCC
Q 037308 212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~ 282 (321)
.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 88888889999999999999998888888889999999999999999998874 567889999999999854
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=3.3e-24 Score=205.80 Aligned_cols=282 Identities=22% Similarity=0.215 Sum_probs=201.1
Q ss_pred EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEE
Q 037308 9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFL 85 (321)
Q Consensus 9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L 85 (321)
.||++++....+.+.+|+.+++|++|+|++|.++ ...+..+.. ++|++|++++|.+..+|.. + ++++|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 4667777777788888999999999999998754 223345666 8899999999988888764 3 78889999
Q ss_pred eccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-------------
Q 037308 86 KVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF------------- 151 (321)
Q Consensus 86 ~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~------------- 151 (321)
++++|.++.++. .++.+++|+. ++++.|.+. .++.+..+..+++|++|++++|.+.+..+..+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~-L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKE-LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCC-CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ECCCCcCCCCChhhhhcCcccCe-eccccCccc-cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999988888765 4678888888 888888886 433222667778888888877754321111100
Q ss_pred --------------------------------------------------------------------------------
Q 037308 152 -------------------------------------------------------------------------------- 151 (321)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (321)
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037308 152 -------------------------------------------------------------------------------- 151 (321)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (321)
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence
Q ss_pred -CcccCcEEecCCCCCccc--c-----------------------------------------------cc---cccCCc
Q 037308 152 -NLEFLTKLDLSGCSKLKR--L-----------------------------------------------LE---ISSGNI 178 (321)
Q Consensus 152 -~l~~L~~L~l~~~~~~~~--~-----------------------------------------------~~---~~~~~L 178 (321)
.+++|+.++++.|..... . +. ..+.++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 112223333332211000 0 00 012234
Q ss_pred cEEEeccccccccC-hhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308 179 NWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK 256 (321)
Q Consensus 179 ~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 256 (321)
+.++++.|.+..++ ..+..++.+++|++++|.... ..|..+..+++|+.|++++|.+.+..|..|.++++|+.|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 45555556665543 346677889999999887554 5667889999999999999999888889999999999999999
Q ss_pred CCCcccc-hhhhccCCcCEEeccCCCCccccc------Cccccccccccc
Q 037308 257 TNVERIP-ESIIQLFVLRYLLLSYSERIQSVS------LPLARGILEDTQ 299 (321)
Q Consensus 257 n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~~~------~~~~l~~l~~~~ 299 (321)
|+++.++ ..+..+++|++|++++| .++.++ +|++++.|++.+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 9999876 56889999999999999 777665 457889998876
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.7e-24 Score=198.09 Aligned_cols=251 Identities=16% Similarity=0.092 Sum_probs=186.6
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCC
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKH 101 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 101 (321)
..++.+++|++|++++|.+++. +.+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++ +..
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM--------TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC--------TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cChhHcCCCCEEEccCCCcccC--------hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCC
Confidence 3566678888888888875532 23455 88888888888888775 347888888888888888763 677
Q ss_pred CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEE
Q 037308 102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWL 181 (321)
Q Consensus 102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 181 (321)
+++|+. ++++.|.++ .+ .+..+++|++|++++|.+.+ ++ ++.+++|+.|+++.|..++.++...+++|+.|
T Consensus 105 l~~L~~-L~L~~N~l~-~l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTY-LNCDTNKLT-KL----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp CTTCCE-EECCSSCCS-CC----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred CCcCCE-EECCCCcCC-ee----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 888888 888888887 44 36788888888888888554 33 77888888888888866666654467888888
Q ss_pred EeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcc
Q 037308 182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER 261 (321)
Q Consensus 182 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (321)
++++|.++++| +..+++|++|++++|.+.+. .++.+++|+.|++++|.+.+ +| +..+++|+.|++++|+++.
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 88888888887 67788888888888887664 37788888888888887766 55 7788888888888888886
Q ss_pred cch-hhhccC-------CcCEEeccCCCCccccc--CccccccccccccC
Q 037308 262 IPE-SIIQLF-------VLRYLLLSYSERIQSVS--LPLARGILEDTQRS 301 (321)
Q Consensus 262 l~~-~l~~l~-------~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~ 301 (321)
+|. .+..+. +|+.|++++|+.+..+| ..++++.|++.++.
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCc
Confidence 662 222222 44555666665555555 33677777777654
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6.2e-25 Score=192.89 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=140.8
Q ss_pred CCceEEEEeecCCCCccccceecc-CCCCc-CcccEEEecCCCCCCCC---Cc-CCcCceeEEeccCCcccccccCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYL-QDPRF-AEVKYFHWHGYPLKSLP---SN-LSAEKLVFLKVPYSDIEQLWNGEKHY 102 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~-~~L~~l~l~~~~l~~~~---~~-~~l~~L~~L~l~~~~l~~~~~~~~~l 102 (321)
++|++|++++|.++ ..+ ..+.. ++|++|++++|.+..+. .. ..+++|++|++++|.+..++..+..+
T Consensus 28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 46777777777643 122 22344 77777777777766442 22 26777777777777777766666677
Q ss_pred CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcc-ccccc--ccCCcc
Q 037308 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLLEI--SSGNIN 179 (321)
Q Consensus 103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~ 179 (321)
++|+. ++++.|.++ ..+....+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ ..+.. .+++|+
T Consensus 101 ~~L~~-L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEH-LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCE-EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCE-EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 77777 777777776 44321256677777777777777555556666677777777777765433 22322 355666
Q ss_pred EEEecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCC-CCcEEEcccC
Q 037308 180 WLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS-SPIILNLAKT 257 (321)
Q Consensus 180 ~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n 257 (321)
+|++++|.++++ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 666666666665 34456666666666666666555554566666666666666666666666666653 6666666666
Q ss_pred CCc
Q 037308 258 NVE 260 (321)
Q Consensus 258 ~l~ 260 (321)
.++
T Consensus 259 ~~~ 261 (306)
T 2z66_A 259 DFA 261 (306)
T ss_dssp CEE
T ss_pred Cee
Confidence 665
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6.4e-25 Score=192.82 Aligned_cols=221 Identities=20% Similarity=0.224 Sum_probs=183.4
Q ss_pred CcccEEEecCCCCCCCCCcC--CcCceeEEeccCCccccc---ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc
Q 037308 58 AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKVPYSDIEQL---WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL 132 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l~~~~l~~~---~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L 132 (321)
++|++|++++|.+..++... .+++|++|++++|.++.+ +..+..+++|+. ++++.|.+. .++. .+..+++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~-L~Ls~n~i~-~l~~--~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY-LDLSFNGVI-TMSS--NFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE-EECCSCSEE-EEEE--EEETCTTC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE-EECCCCccc-cChh--hcCCCCCC
Confidence 78999999999999988763 899999999999998765 345567888999 999999998 7765 68889999
Q ss_pred cEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc--cChhhhccCCCCeEecc
Q 037308 133 VILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLS 207 (321)
Q Consensus 133 ~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~ 207 (321)
++|++++|.+....+ ..+..+++|++|++++|......+.. .+++|++|++++|.+++ +|..+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 999999998544433 46888999999999998655444433 47889999999999886 67778889999999999
Q ss_pred cCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcc-cchhhhccC-CcCEEeccCCCC
Q 037308 208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER-IPESIIQLF-VLRYLLLSYSER 282 (321)
Q Consensus 208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~l~~l~-~L~~L~l~~n~~ 282 (321)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. .|..+..++ +|++|++++|+.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999888778888899999999999988877766678889999999999999984 445677774 899999999944
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=5e-25 Score=208.57 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=195.2
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWNG-EKHYSN 104 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~ 104 (321)
++|++|++++|.++ ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|+++.++.. +..+++
T Consensus 26 ~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKIT------YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCC------EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccC------ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 68999999999855 233455666 999999999999988764 34 899999999999999988764 789999
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc----------
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI---------- 173 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~---------- 173 (321)
|+. ++++.|.++ .++.+..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|...+..+..
T Consensus 100 L~~-L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 100 LKY-LNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CCE-EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CcE-EECCCCccc-ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 999 999999998 43222278999999999999998666666 46899999999999987654433322
Q ss_pred ----------------ccCCccEEEeccccccccC---hh-----------------------------hhcc-------
Q 037308 174 ----------------SSGNINWLFLRETAIEELP---SS-----------------------------IERL------- 198 (321)
Q Consensus 174 ----------------~~~~L~~L~l~~~~i~~l~---~~-----------------------------~~~l------- 198 (321)
.+++|++|++++|.+++++ .. +..+
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 1456666666666665431 00 0011
Q ss_pred ----------------------------------------------------CCCCeEecccCcccccccccc-cCCCCC
Q 037308 199 ----------------------------------------------------LRLGHLDLSDCKRLKSLPSSL-FKLKSL 225 (321)
Q Consensus 199 ----------------------------------------------------~~L~~L~l~~n~~~~~~~~~~-~~l~~L 225 (321)
++|++|++++|.+. .+|..+ +.+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence 22333333333322 233333 468899
Q ss_pred CEEEecCCCCCCccc---cccCCCCCCcEEEcccCCCcccc---hhhhccCCcCEEeccCCCCccccc----Cccccccc
Q 037308 226 GVLNLGGCSNLQRLP---ECLGQLSSPIILNLAKTNVERIP---ESIIQLFVLRYLLLSYSERIQSVS----LPLARGIL 295 (321)
Q Consensus 226 ~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l 295 (321)
+.|++++|.+.+.+| ..++.+++|+.|++++|+++.++ ..+..+++|++|++++| .++.+| .+++++.|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEE
Confidence 999999988877654 34678899999999999999776 35788999999999999 888887 45678888
Q ss_pred cccccCc
Q 037308 296 EDTQRSP 302 (321)
Q Consensus 296 ~~~~~~~ 302 (321)
++.++.-
T Consensus 416 ~Ls~N~l 422 (549)
T 2z81_A 416 NLSSTGI 422 (549)
T ss_dssp ECTTSCC
T ss_pred ECCCCCc
Confidence 8877653
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=8.7e-24 Score=183.74 Aligned_cols=219 Identities=20% Similarity=0.209 Sum_probs=132.9
Q ss_pred cEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccC
Q 037308 61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG 139 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 139 (321)
+.++.+++.+..+|..+ .++|++|++++|.++.++. .+..+++|+. ++++.|.+++..+. .+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTI-LWLHSNVLARIDAA--AFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCE-EECCCCccceeCHh--hcCCccCCCEEeCCC
Confidence 44555555555555432 3456666666666655542 3455566666 66666666523233 566666666666666
Q ss_pred CC-CCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccc
Q 037308 140 SK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSL 215 (321)
Q Consensus 140 n~-~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~ 215 (321)
|. +....|..+..+++|++|++++|...+..+.. .+++|++|++++|.+++++.. +..+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 33333445666666666666665443332221 355666677766766666543 566677777777777666555
Q ss_pred cccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308 216 PSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l 283 (321)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5556677777777777776666666667777777777777777776653 4666777777777777443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=194.47 Aligned_cols=250 Identities=17% Similarity=0.184 Sum_probs=187.2
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNG-EKHYSN 104 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~ 104 (321)
++|++|++++|.++ ......+.. ++|++|++++|.+..++.. + .+++|++|++++|+++.++.. +..+++
T Consensus 52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 47899999888754 222234555 8899999998888776543 4 788899999999988887665 677888
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCccc-CccccCcccCcEEecCCCCCccccccc--ccCCccEE
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWL 181 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L 181 (321)
|+. ++++.|.++ .++....+..+++|++|++++|...+.+ +..+..+++|++|++++|...+..+.. .+++|++|
T Consensus 126 L~~-L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 126 LTF-LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp CSE-EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCE-EECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 888 888888888 6653236788889999999888534444 556888889999999887655443433 46788889
Q ss_pred EeccccccccChh-hhccCCCCeEecccCcccccccccc---cCCCCCCEEEecCCCCCC----ccccccCCCCCCcEEE
Q 037308 182 FLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSL---FKLKSLGVLNLGGCSNLQ----RLPECLGQLSSPIILN 253 (321)
Q Consensus 182 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ 253 (321)
++++|.++.+|.. +..+++|++|++++|.+.+..+..+ .....++.++++++.+.+ .+|..+..+++|+.|+
T Consensus 204 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred cCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 9998888887754 4557889999999888776544332 345678888888877654 3667788899999999
Q ss_pred cccCCCcccchh-hhccCCcCEEeccCCCCcccc
Q 037308 254 LAKTNVERIPES-IIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 254 l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~l~~~ 286 (321)
+++|+++.+|.. +..+++|++|++++|+.....
T Consensus 284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 999999988876 478899999999999655543
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-25 Score=197.96 Aligned_cols=257 Identities=11% Similarity=0.008 Sum_probs=203.5
Q ss_pred ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccC
Q 037308 11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPY 89 (321)
Q Consensus 11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~ 89 (321)
+++...........+..+++|++|++++|.+++.. +..+.. ++|++|++++|.+..++....+++|++|++++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC------HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCC------HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence 33444333344455667789999999999865432 223445 89999999999987666545899999999999
Q ss_pred CcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccc
Q 037308 90 SDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR 169 (321)
Q Consensus 90 ~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~ 169 (321)
|.++.++. .++++. ++++.|.++ .++. ..+++|++|++++|.+.+..+..+..+++|++|++++|...+.
T Consensus 90 n~l~~l~~----~~~L~~-L~l~~n~l~-~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 90 NYVQELLV----GPSIET-LHAANNNIS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SEEEEEEE----CTTCCE-EECCSSCCS-EEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CccccccC----CCCcCE-EECCCCccC-CcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99988753 378888 999999998 4432 3468899999999997766666788899999999999876554
Q ss_pred cccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCC
Q 037308 170 LLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246 (321)
Q Consensus 170 ~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 246 (321)
.+.. .+++|++|++++|.+++++.. ..+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 3332 368999999999999998643 3588999999999997764 445889999999999998766 577888999
Q ss_pred CCCcEEEcccCCCc--ccchhhhccCCcCEEeccCCCCcccc
Q 037308 247 SSPIILNLAKTNVE--RIPESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 247 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
++|+.|++++|.++ .++.++..++.|+.+++.+|+.++..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999999998 67788899999999999977666544
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.4e-23 Score=182.52 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=165.5
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhcccc-ccccC-CCCCCCCCCCCc
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNK-LIAKT-PNPTLMPHLNKL 132 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~-l~~~~-~~~~~~~~l~~L 132 (321)
++|+.|++++|.+..++.. + .+++|++|++++|.++.+ +..+..+++|+. ++++.|. +. .+ +. .+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~~l~-~~~~~--~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ-LDLSDNAQLR-SVDPA--TFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSCTTCC-CCCTT--TTTTCTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE-EeCCCCCCcc-ccCHH--HhcCCcCC
Confidence 6888888888888777653 3 788888888888888877 456777888888 8888886 66 54 44 78889999
Q ss_pred cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccC
Q 037308 133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDC 209 (321)
Q Consensus 133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n 209 (321)
++|++++|.+.+..|..+..+++|++|++++|......+.. .+++|++|++++|.+++++. .+..+++|++|++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 99999999876666777888999999999997654333321 47889999999999999885 4888999999999999
Q ss_pred cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 988888889999999999999999988877778999999999999999988
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=6.5e-24 Score=196.33 Aligned_cols=254 Identities=18% Similarity=0.183 Sum_probs=146.1
Q ss_pred cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-C-------------cccEEEecCCCCCCCCCcC
Q 037308 12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-A-------------EVKYFHWHGYPLKSLPSNL 77 (321)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~-------------~L~~l~l~~~~l~~~~~~~ 77 (321)
++++....+ +..++.+++|++|++++|.++|..+ ..+.. . +++.+++++|.+..+|..
T Consensus 18 l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p------~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 18 RHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAP------PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------CCHHHHHHHHHHHHHTSC------TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred cccCchhhC-ChhHhcccchhhhhccCCcccccCC------cccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 344433333 4568889999999999887654433 22332 2 357788888877777663
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
.++|++|++++|.++.++.. .++++. ++++.|.++ .++. . .++|++|++++|.+. .+|. ++.+++|+
T Consensus 90 -~~~L~~L~l~~n~l~~lp~~---~~~L~~-L~l~~n~l~-~l~~--~---~~~L~~L~L~~n~l~-~lp~-~~~l~~L~ 156 (454)
T 1jl5_A 90 -PPHLESLVASCNSLTELPEL---PQSLKS-LLVDNNNLK-ALSD--L---PPLLEYLGVSNNQLE-KLPE-LQNSSFLK 156 (454)
T ss_dssp -CTTCSEEECCSSCCSSCCCC---CTTCCE-EECCSSCCS-CCCS--C---CTTCCEEECCSSCCS-SCCC-CTTCTTCC
T ss_pred -cCCCCEEEccCCcCCccccc---cCCCcE-EECCCCccC-cccC--C---CCCCCEEECcCCCCC-CCcc-cCCCCCCC
Confidence 56788888888877776543 356666 777777776 4442 1 257777777777644 3663 77777777
Q ss_pred EEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308 158 KLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ 237 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 237 (321)
+|++++|. ++.+|.. ..+|++|++++|.++++| .+..+++|++|++++|.+.+ +|.. .++|+.|++++|.+.
T Consensus 157 ~L~l~~N~-l~~lp~~-~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 157 IIDVDNNS-LKKLPDL-PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp EEECCSSC-CSCCCCC-CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred EEECCCCc-CcccCCC-cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 77777764 3345544 557777777777777766 46667777777777766554 2321 235666666665544
Q ss_pred ccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-Cccccccccccc
Q 037308 238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQ 299 (321)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~ 299 (321)
.+| .++.+++|+.|++++|+++.+|.. .++|++|++++| .++.+| .+++++.|++.+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCS
T ss_pred ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCC-cccccCcccCcCCEEECcC
Confidence 444 355666666666666666655532 244555555555 444444 334444444443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.7e-22 Score=186.87 Aligned_cols=205 Identities=25% Similarity=0.286 Sum_probs=109.1
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|++|++++|.+..+|.. .++|++|++++|+++.++ .+..+++|+. ++++.|.++ .+|. . ..+|++|++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~-L~l~~N~l~-~l~~--~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTA-IYADNNSLK-KLPD--L---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCE-EECCSSCCS-SCCC--C---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCE-EECCCCcCC-cCCC--C---cCcccEEEC
Confidence 5566666666655555543 245666666666665544 4555666666 666666665 3432 1 135666666
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccc--cc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK--SL 215 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~--~~ 215 (321)
++|.+. .+|. +..+++|++|++++|.. ..+|.. +++|+.|++++|.++++|.. .++|++|++++|.+.+ ..
T Consensus 223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~l-~~l~~~-~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 223 GNNILE-ELPE-LQNLPFLTTIYADNNLL-KTLPDL-PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCC-SSCCSC-CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred cCCcCC-cccc-cCCCCCCCEEECCCCcC-Cccccc-ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence 666533 5553 66667777777766543 334433 45566666666665555432 2345555555554443 11
Q ss_pred cccc-------------cCC-CCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCC
Q 037308 216 PSSL-------------FKL-KSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSE 281 (321)
Q Consensus 216 ~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 281 (321)
|..+ ..+ ++|+.|++++|.+.+ +|.. +++|+.|++++|+++.+|. .+++|++|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N- 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN- 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-
Confidence 1111 111 356666666655443 3332 3566666666666666554 3456666666666
Q ss_pred Cccccc
Q 037308 282 RIQSVS 287 (321)
Q Consensus 282 ~l~~~~ 287 (321)
.++.+|
T Consensus 368 ~l~~l~ 373 (454)
T 1jl5_A 368 PLREFP 373 (454)
T ss_dssp CCSSCC
T ss_pred CCCcCC
Confidence 444433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=8.2e-23 Score=189.04 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=190.0
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNG-EKHYSN 104 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~ 104 (321)
+++++|++++|.++ ...+..+.. ++|++|++++|.+..++.. + ++++|++|++++|.++.++.. +..+++
T Consensus 75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 58999999999854 333455666 9999999999999887643 4 799999999999999988765 678999
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc-cccCcccCcEEecCCCCCccccccc-ccCCccEEE
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLF 182 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~ 182 (321)
|+. |+++.|.++ .++. ..+..+++|++|++++|...+.++. .+..+++|+.|++++|.. ..++.. .+++|+.|+
T Consensus 149 L~~-L~L~~N~l~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 149 LRE-LWLRNNPIE-SIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELE 224 (452)
T ss_dssp CCE-EECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEE
T ss_pred CCE-EECCCCCcc-eeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEE
Confidence 999 999999998 6552 2689999999999999766776664 588999999999999764 444544 578999999
Q ss_pred eccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 183 LRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 183 l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999999974 56899999999999999998888888999999999999999988777778899999999999999876
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=8.6e-23 Score=188.28 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=190.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccccc-CCCCCCC
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWN-GEKHYSN 104 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~-~~~~l~~ 104 (321)
+++++|++++|.++ ...+..+.. ++|++|++++|.+..++.. + ++++|++|++++|+++.++. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 58999999999854 333455666 9999999999999887754 4 79999999999999998876 5788999
Q ss_pred hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc-cccCcccCcEEecCCCCCccccccc-ccCCccEEE
Q 037308 105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLF 182 (321)
Q Consensus 105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~ 182 (321)
|+. ++++.|.+. .++. ..+..+++|++|++++|...+.++. .|..+++|+.|++++|. ++.+|.. .+++|+.|+
T Consensus 138 L~~-L~L~~N~i~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 138 LKE-LWLRNNPIE-SIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELD 213 (440)
T ss_dssp CCE-EECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEE
T ss_pred Cce-eeCCCCccc-ccCH-HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEE
Confidence 999 999999998 5552 2789999999999999766666654 68899999999999975 4455544 578999999
Q ss_pred ecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 183 LRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 183 l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+++|.++++ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999997 467899999999999999999888888999999999999999988877778899999999999999976
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.5e-23 Score=184.71 Aligned_cols=241 Identities=18% Similarity=0.147 Sum_probs=195.6
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK 86 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~ 86 (321)
|+++++.........+..+++|++|++++|.++ ...+..+.. ++|++|++++|.+..++.. + .+++|++|+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 455566555666678999999999999999854 233345666 9999999999999998876 3 799999999
Q ss_pred ccCCccccccc--CCCCCCChHhHHhhccc-cccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308 87 VPYSDIEQLWN--GEKHYSNLNQIINATCN-KLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (321)
Q Consensus 87 l~~~~l~~~~~--~~~~l~~L~~~l~l~~~-~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 163 (321)
+++|+++.++. .+..+++|+. ++++.| .+. .++ +..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~-L~l~~n~~~~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQI-LRVGNMDTFT-KIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCC-EEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCCCcccCchhhhccCCCCcE-EECCCCcccc-ccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999998876 6788999999 999887 566 443 12789999999999999997777788899999999999999
Q ss_pred CCCccccccc---ccCCccEEEeccccccccChh----hhccCCCCeEecccCcccc----cccccccCCCCCCEEEecC
Q 037308 164 CSKLKRLLEI---SSGNINWLFLRETAIEELPSS----IERLLRLGHLDLSDCKRLK----SLPSSLFKLKSLGVLNLGG 232 (321)
Q Consensus 164 ~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~----~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~ 232 (321)
|.. +.++.. .+++|+.|++++|.+++++.. ......++.+++..+.+.+ .+|..+..+++|+.|++++
T Consensus 208 n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 208 KQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp SCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred Ccc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 764 444433 378999999999999986521 2345678889999888765 4677788999999999999
Q ss_pred CCCCCccccc-cCCCCCCcEEEcccCCCcc
Q 037308 233 CSNLQRLPEC-LGQLSSPIILNLAKTNVER 261 (321)
Q Consensus 233 ~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 261 (321)
|.+. .+|.. +..+++|+.|++++|.++.
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 9877 55555 5899999999999999983
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=7.7e-22 Score=188.35 Aligned_cols=219 Identities=22% Similarity=0.198 Sum_probs=148.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
++|++|++++|.++. .+. ..++|++|++++|.+..+|. .+++|++|++++|.++.++. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~~-------lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~- 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-------LPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCK- 125 (622)
T ss_dssp TTCSEEEECSCCCSC-------CCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCE-
T ss_pred CCCcEEEecCCCCCC-------CCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCE-
Confidence 678888888876541 111 12777888888887777776 56777788887777777655 4455666
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccc---c--------------CcccCcEEecCCCCCccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGI---F--------------NLEFLTKLDLSGCSKLKRLL 171 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l---~--------------~l~~L~~L~l~~~~~~~~~~ 171 (321)
++++.|.++ .+|. . +++|++|++++|.+. .+|..+ . .+++|+.|++++|. ++.++
T Consensus 126 L~L~~N~l~-~lp~--~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~ 197 (622)
T 3g06_A 126 LWIFGNQLT-SLPV--L---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLP 197 (622)
T ss_dssp EECCSSCCS-CCCC--C---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCC
T ss_pred EECCCCCCC-cCCC--C---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCC
Confidence 777777776 5553 2 366777777776633 333211 1 22566666666654 33344
Q ss_pred ccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308 172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII 251 (321)
Q Consensus 172 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 251 (321)
.. +++|+.|++++|.++.+|.. +++|++|++++|.+.+ +| ..+++|+.|++++|.+. .+|. .+++|+.
T Consensus 198 ~~-~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~ 265 (622)
T 3g06_A 198 TL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS 265 (622)
T ss_dssp CC-CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred Cc-cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence 43 56677777777776666642 3678888888887665 44 45678888888887665 4554 5678899
Q ss_pred EEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308 252 LNLAKTNVERIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
|++++|.++.+|..+..+++|+.|++++|+.
T Consensus 266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred EeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 9999999988888888889999999999844
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-24 Score=190.55 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=190.1
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP 88 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~ 88 (321)
||++++......+..++.+++|++|++++|.+++. ++ +.. ++|++|++++|.+..++. .++|++|+++
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~ 107 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------LD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAA 107 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-------EE-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECC
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-------hh-hhhcCCCCEEECcCCccccccC---CCCcCEEECC
Confidence 45566666667778899999999999999985432 11 555 999999999999877663 4899999999
Q ss_pred CCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccc-cCcccCcEEecCCCCCc
Q 037308 89 YSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKL 167 (321)
Q Consensus 89 ~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~~~~~ 167 (321)
+|.++.++.. .+++|+. ++++.|.+++..+. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|...
T Consensus 108 ~n~l~~~~~~--~~~~L~~-L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKN-IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp SSCCSEEEEC--CCSSCEE-EECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCccCCcCcc--ccCCCCE-EECCCCCCCCccch--hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999987653 4688999 99999999944443 67889999999999999776656555 47899999999998754
Q ss_pred ccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCC
Q 037308 168 KRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQL 246 (321)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~ 246 (321)
...+...+++|++|++++|.++++|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. +.++..+..+
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 432222588999999999999999988999999999999999977 46777899999999999999988 6777888889
Q ss_pred CCCcEEEcccC
Q 037308 247 SSPIILNLAKT 257 (321)
Q Consensus 247 ~~L~~L~l~~n 257 (321)
++|+.+++.++
T Consensus 262 ~~L~~l~l~~~ 272 (317)
T 3o53_A 262 QRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred ccceEEECCCc
Confidence 99999988754
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.6e-23 Score=195.36 Aligned_cols=232 Identities=13% Similarity=0.032 Sum_probs=186.4
Q ss_pred CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChH
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLN 106 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~ 106 (321)
+++|++|++++|.+++. .+..+.. ++|++|++++|.+..++....+++|++|++++|.++.++.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 44899999999986543 2234555 89999999999987665544899999999999999887643 7888
Q ss_pred hHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEe
Q 037308 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFL 183 (321)
Q Consensus 107 ~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l 183 (321)
. ++++.|.+. .++. ..+++|+.|++++|.+.+..|..++.+++|+.|++++|...+..|.. .+++|++|++
T Consensus 103 ~-L~L~~N~l~-~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 103 T-LHAANNNIS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp E-EECCSSCCC-CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred E-EECcCCcCC-CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 8 999999998 4432 34688999999999977777777888999999999998766544443 3689999999
Q ss_pred ccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc--c
Q 037308 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE--R 261 (321)
Q Consensus 184 ~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~ 261 (321)
++|.+++++. ...+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .
T Consensus 177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCccccccc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 9999998864 3458899999999999776544 48889999999999987764 7778888999999999999998 6
Q ss_pred cchhhhccCCcCEEecc
Q 037308 262 IPESIIQLFVLRYLLLS 278 (321)
Q Consensus 262 l~~~l~~l~~L~~L~l~ 278 (321)
+|.++..++.|+.+++.
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 77788888888888775
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=5.5e-22 Score=171.51 Aligned_cols=216 Identities=18% Similarity=0.129 Sum_probs=140.7
Q ss_pred ecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC
Q 037308 65 WHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL 143 (321)
Q Consensus 65 l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 143 (321)
..+..+..+|..+ .++|++|++++|.++.++. .+..+++|+. ++++.|.+.+..+. .+..+++|++|++++|.+.
T Consensus 14 c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 14 CMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQV-LDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSE-EECTTCCCCEECTT--TTTTCTTCCEEECTTCCCC
T ss_pred ecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcE-EECCCCcCCccCHH--HccCCcCCCEEECCCCccC
Confidence 3344444555433 2456666666666665543 4555666666 66666666522222 5666777777777777755
Q ss_pred cccCccccCcccCcEEecCCCCCccccc--ccccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccc
Q 037308 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLL--EISSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSL 219 (321)
Q Consensus 144 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 219 (321)
+..+..+.++++|++|++++|...+..+ ...+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 5555556777777777777765433222 1146677777777777776 56778888888888888888777666666
Q ss_pred cCCCCCC----EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308 220 FKLKSLG----VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 220 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~ 285 (321)
..+++|+ .|++++|.+.+..+..+ ...+|+.|++++|+++.+|. .+..+++|++|++++|+.-.+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 6666666 78888877665444433 34478888888888887775 457788888888888854444
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=196.44 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=192.2
Q ss_pred ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCce
Q 037308 4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKL 82 (321)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L 82 (321)
+++. |+++++......+..|+.+++|++|++++|.+++.. + +.. ++|++|++++|.+..++. .++|
T Consensus 35 ~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~~L~~L~Ls~N~l~~l~~---~~~L 101 (487)
T 3oja_A 35 NVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLV---GPSI 101 (487)
T ss_dssp GCCE--EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------E-CTTCTTCCEEECCSSEEEEEEE---CTTC
T ss_pred CccE--EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------c-cccCCCCCEEEecCCcCCCCCC---CCCc
Confidence 3444 455566556677788999999999999999865321 1 555 999999999999887764 3899
Q ss_pred eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-CcccCcEEec
Q 037308 83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDL 161 (321)
Q Consensus 83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l 161 (321)
++|++++|.+..++.. .+++|+. ++++.|.+++..+. .+..+++|++|++++|.+.+..|..+. .+++|+.|++
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~-L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKN-IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEE-EECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECcCCcCCCCCcc--ccCCCCE-EECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 9999999999987653 4688999 99999999955554 788899999999999998877777665 7999999999
Q ss_pred CCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-Cccc
Q 037308 162 SGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLP 240 (321)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~ 240 (321)
++|...+..+...+++|+.|++++|.++++|..+..+++|+.|++++|.+.+ +|..++.+++|+.|++++|.+. +.+|
T Consensus 177 s~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9987554433336889999999999999999889999999999999999775 6777899999999999999887 5667
Q ss_pred cccCCCCCCcEEEcc
Q 037308 241 ECLGQLSSPIILNLA 255 (321)
Q Consensus 241 ~~~~~~~~L~~L~l~ 255 (321)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 778888888888775
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.4e-21 Score=183.90 Aligned_cols=235 Identities=20% Similarity=0.136 Sum_probs=168.3
Q ss_pred CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308 29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI 108 (321)
Q Consensus 29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~ 108 (321)
.++++|++++|.++ ..+..+. ++|++|++++|.+..+|. .+++|++|++++|.++.++. .+++|+.
T Consensus 40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~- 105 (622)
T 3g06_A 40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE- 105 (622)
T ss_dssp HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE-
T ss_pred CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE-
Confidence 36899999998754 2222222 899999999999999988 68999999999999998876 6788999
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i 188 (321)
|+++.|.++ .++. .+++|++|++++|. +..+|.. +++|++|++++|. ++.++.. +++|+.|++++|.+
T Consensus 106 L~Ls~N~l~-~l~~-----~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~-~~~L~~L~L~~N~l 173 (622)
T 3g06_A 106 LSIFSNPLT-HLPA-----LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQL 173 (622)
T ss_dssp EEECSCCCC-CCCC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC-CTTCCEEECCSSCC
T ss_pred EECcCCcCC-CCCC-----CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc-cCCCCEEECCCCCC
Confidence 999999998 6663 57899999999998 4456763 5899999999975 4444443 56666676666666
Q ss_pred cccChhhhccCCCCeEecccCcccccccccc-----------------cCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSL-----------------FKLKSLGVLNLGGCSNLQRLPECLGQLSSPII 251 (321)
Q Consensus 189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 251 (321)
+.+| ..+++|+.|++++|.+.+ +|..+ ..+++|+.|++++|.+.+ +| ..+++|+.
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred CCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 6666 234556666666665443 22111 123567777777766544 44 35577888
Q ss_pred EEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccC
Q 037308 252 LNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRS 301 (321)
Q Consensus 252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~ 301 (321)
|++++|.++.+|. .+++|++|++++| .++.+| ..++++.|++.++.
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 8888888887776 5678888888888 777776 22455666665543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.9e-23 Score=184.05 Aligned_cols=243 Identities=19% Similarity=0.155 Sum_probs=165.5
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCC--CCCcC--------CcCceeEEeccCCcccc
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKS--LPSNL--------SAEKLVFLKVPYSDIEQ 94 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~--~~~~~--------~l~~L~~L~l~~~~l~~ 94 (321)
++..++|++|++.+|.+ ..+ ..+. ..|+.++++++.+.. ++... .+++|++|++++|+++.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p------~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADL------GQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCC------HHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred EccCCCceeEeeccccc--ccH------HHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 34445666666666653 111 1011 236666666665532 33322 47788888888888774
Q ss_pred -cccCC--CCCCChHhHHhhccccccccCCCCCCCCCC-----CCccEEEccCCCCCcccCccccCcccCcEEecCCCCC
Q 037308 95 -LWNGE--KHYSNLNQIINATCNKLIAKTPNPTLMPHL-----NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166 (321)
Q Consensus 95 -~~~~~--~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~ 166 (321)
++..+ ..+++|+. ++++.|.++ ..|. .+..+ ++|++|++++|.+.+..|..++.+++|++|++++|..
T Consensus 110 ~~~~~~~~~~l~~L~~-L~Ls~N~l~-~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNI-LNLRNVSWA-TRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCCCCSSSCCSCCCSE-EEEESCBCS-SSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred hhHHHHHHhcCCCccE-EEccCCCCc-chhH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 44444 67777888 888888887 4454 55554 7888888888886666556788888888888888765
Q ss_pred cccc--c-c---cccCCccEEEeccccccccC---hh-hhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCC
Q 037308 167 LKRL--L-E---ISSGNINWLFLRETAIEELP---SS-IERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSN 235 (321)
Q Consensus 167 ~~~~--~-~---~~~~~L~~L~l~~~~i~~l~---~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~ 235 (321)
.+.. + . ..+++|++|++++|.+++++ .. +..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+
T Consensus 186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 4431 1 1 24678888888888888543 22 3566888888888888777654 4456678888888888776
Q ss_pred CCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308 236 LQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~ 285 (321)
. .+|..+. ++|+.|++++|+++.+|. +..+++|++|++++| .+++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC-TTTC
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC-CCCC
Confidence 5 6666555 788888888888887776 778888888888888 4443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.5e-23 Score=184.74 Aligned_cols=233 Identities=18% Similarity=0.081 Sum_probs=183.8
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccc--ccCCC-------CCCChHhHHhhccccccccCCCCCCC--
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQL--WNGEK-------HYSNLNQIINATCNKLIAKTPNPTLM-- 126 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~-------~l~~L~~~l~l~~~~l~~~~~~~~~~-- 126 (321)
++|+.+++++|.+ .+|..+. ..|+.|++++|.+... +.... .+++|++ ++++.|.+++..|. .+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE-LTLENLEVTGTAPP--PLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE-EEEEEEBCBSCCCC--CSSS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccE-EEccCCcccchhHH--HHHH
Confidence 7899999999998 7776542 2289999999998653 33333 5888999 99999999977776 44
Q ss_pred CCCCCccEEEccCCCCCcccCccccCc-----ccCcEEecCCCCCccccccc--ccCCccEEEeccccccc---cChhh-
Q 037308 127 PHLNKLVILNLRGSKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE---LPSSI- 195 (321)
Q Consensus 127 ~~l~~L~~L~l~~n~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~---l~~~~- 195 (321)
..+++|++|++++|.+.+. |..+..+ ++|++|++++|...+..+.. .+++|++|++++|.+.+ ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999996665 7777776 89999999998755444333 58899999999999765 34344
Q ss_pred -hccCCCCeEecccCcccc--ccc-ccccCCCCCCEEEecCCCCCCccc-cccCCCCCCcEEEcccCCCcccchhhhccC
Q 037308 196 -ERLLRLGHLDLSDCKRLK--SLP-SSLFKLKSLGVLNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIPESIIQLF 270 (321)
Q Consensus 196 -~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~ 270 (321)
..+++|++|++++|.+.+ ..+ ..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+. +
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 788999999999999773 222 345688999999999999888764 456678999999999999999998766 8
Q ss_pred CcCEEeccCCCCccccc---Cccccccccccc
Q 037308 271 VLRYLLLSYSERIQSVS---LPLARGILEDTQ 299 (321)
Q Consensus 271 ~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~ 299 (321)
+|++|++++| .++.+| ..++++.|++.+
T Consensus 275 ~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 275 KLSVLDLSYN-RLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp EEEEEECCSS-CCCSCCCTTTSCEEEEEECTT
T ss_pred CceEEECCCC-CCCCChhHhhCCCCCEEeccC
Confidence 9999999999 888877 234555555554
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.2e-21 Score=164.46 Aligned_cols=198 Identities=18% Similarity=0.172 Sum_probs=114.2
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
...+.++++++.++.+|..+. +++++|++++|.++.++. .+..+++|+. ++++.|.++ .++. ..+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~-~i~~-~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRL-LYLNDNKLQ-TLPA-GIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCE-EECCSSCCS-CCCT-TTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCE-EECCCCccC-eeCh-hhhcCCCCCCEEE
Confidence 567899999999998887653 689999999999887654 5666777777 777777776 5543 1456677777777
Q ss_pred ccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccc
Q 037308 137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLK 213 (321)
Q Consensus 137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~ 213 (321)
+++|.+....+..+..+++|++|++++|......+.. .+++|++|++++|.+++++.. +..+++|++|++++|.+.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 7777644433344566666666666665432222111 244455555555554444432 3444445555554444444
Q ss_pred cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308 214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV 259 (321)
Q Consensus 214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (321)
..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 3333344444444444444444333333344444444444444444
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=9.3e-21 Score=163.36 Aligned_cols=196 Identities=20% Similarity=0.161 Sum_probs=133.2
Q ss_pred ceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308 81 KLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD 160 (321)
Q Consensus 81 ~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 160 (321)
+.+.++++++.++.++..+. ++++. ++++.|.++ .++. ..+..+++|++|++++|.+....+..|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~-L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKK-LDLQSNKLS-SLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSE-EECCSSCCS-CCCT-TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCE-EECcCCCCC-eeCH-HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 45677777777777665432 45666 777777777 4441 2577777788888877774433334456777788888
Q ss_pred cCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308 161 LSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236 (321)
Q Consensus 161 l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 236 (321)
+++|... .++.. .+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 7776533 33321 35677778887777777664 3567777888888777766655555777777888888777766
Q ss_pred CccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCC
Q 037308 237 QRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~ 282 (321)
+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6655567777778888887777776664 466677777888877753
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.6e-21 Score=168.54 Aligned_cols=195 Identities=22% Similarity=0.170 Sum_probs=131.2
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN 136 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~ 136 (321)
++++.+++.++.+..+|..+. ++++.|++++|.++.+. ..+..+++|+. ++++.|.++ .++. ...+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~-~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQ-LNLDRAELT-KLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCE-EECTTSCCC-EEEC---CSCCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCE-EECCCCccC-cccC---CCCCCcCCEEE
Confidence 788999999999988887653 68899999999988764 45677777887 888888887 5553 36777888888
Q ss_pred ccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccc
Q 037308 137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLK 213 (321)
Q Consensus 137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~ 213 (321)
+++|. +..+|..+..+++|+.|++++|...+..+.. .+++|++|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 84 Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 88877 4466666777777777777775433222211 355666666666666665543 4556666666666666554
Q ss_pred cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
..+..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44444556666666666665543 45555555666666666666655
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.1e-20 Score=164.53 Aligned_cols=200 Identities=18% Similarity=0.126 Sum_probs=166.0
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
.++++++++++++.++.++.++. ++++. ++++.|.+++..+. .+..+++|++|++++|.+. .++. .+.+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~-L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTI-LHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCE-EECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCE-EEcCCCcCCccCHH--HhhcCCCCCEEECCCCccC-cccC-CCCCCcCC
Confidence 57889999999999999887653 57777 99999999844444 7889999999999999854 4444 36899999
Q ss_pred EEecCCCCCccccccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308 158 KLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 234 (321)
.|++++|.. +.+|.. .+++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999754 455543 4788999999999999987 458889999999999999887777778899999999999988
Q ss_pred CCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~ 285 (321)
+.+..+..+..+++|+.|++++|+++.+|..+...+.|+.+++.+|+....
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 876665667889999999999999999998888888999999999965443
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.5e-21 Score=170.17 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=121.1
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|+.|++.++.+..++....+++|++|++++|.+..++. +..+++|+. ++++.|.++ .++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~-L~L~~n~l~-~~~---~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITE-LELSGNPLK-NVS---AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCE-EECCSCCCS-CCG---GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCE-EEccCCcCC-Cch---hhcCCCCCCEEEC
Confidence 7788888888888777754478888888888888877655 666777777 777777776 443 4666777777777
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 217 (321)
++|.+. .+++ +..+++|++|++++|...+..+...+++|++|++++|.+++++. +..+++|++|++++|.+.+..+
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 777633 3443 66677777777776543322222235566666666666666554 5555666666666665544322
Q ss_pred cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP 263 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 263 (321)
+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.++..|
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred -hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 455666666666665554433 2555666666666666655444
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.9e-21 Score=167.35 Aligned_cols=194 Identities=19% Similarity=0.255 Sum_probs=107.7
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
.+++|++|++++|.+..++ ++..+++|+. ++++.|.++ .++ .+..+++|++|++++|.+ ..++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~-L~L~~n~i~-~~~---~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIG-LELKDNQIT-DLA---PLKNLTKITELELSGNPL-KNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCE-EECCSSCCC-CCG---GGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCE-EEccCCcCC-CCh---hHccCCCCCEEEccCCcC-CCch-hhcCCCCCC
Confidence 4556666666666665543 4555566666 666666665 443 255566666666666653 2333 255566666
Q ss_pred EEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308 158 KLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 236 (321)
+|++++|.... ++.. .+++|++|++++|.+++++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 111 ~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCC-chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 66666654322 2222 35566666666666665554 5555666666666665444222 556666666666665554
Q ss_pred CccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+..+ +..+++|+.|++++|+++.++. +..+++|++|++++| .++..|
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE-EEECCC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC-eeecCC
Confidence 3322 5556666666666666665552 555666666666666 444433
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.3e-20 Score=162.57 Aligned_cols=198 Identities=20% Similarity=0.158 Sum_probs=103.6
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|+.+++.++.+..++....+++|++|++++|.+..+ ..+..+++|+. ++++.|.++ .++. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTY-LILTGNQLQ-SLPN-GVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCE-EECTTSCCC-CCCT-TTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCE-EECCCCccC-ccCh-hHhcCCcCCCEEEC
Confidence 56666666666665555444566666666666665543 23444444444 555555544 2221 13455555555555
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+.+..+..+..+++|++|++++ |.+++++.. +..+++|++|++++|.+.+..+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAH----------------------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHHHhccCCCCCEEECCC----------------------CccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 55554433333344455555555554 444444432 3455566666666665554444
Q ss_pred ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.++.++.++++.|..-..+|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 44555666666666666555555445555666666666666544 223445555555553333433
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=167.88 Aligned_cols=221 Identities=19% Similarity=0.090 Sum_probs=170.8
Q ss_pred CcccEEEecCCCCCC-----CCCcCCcCceeEEeccCCcccccc-cCC--CCCCChHhHHhhccccccccCCC--CCCCC
Q 037308 58 AEVKYFHWHGYPLKS-----LPSNLSAEKLVFLKVPYSDIEQLW-NGE--KHYSNLNQIINATCNKLIAKTPN--PTLMP 127 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~-----~~~~~~l~~L~~L~l~~~~l~~~~-~~~--~~l~~L~~~l~l~~~~l~~~~~~--~~~~~ 127 (321)
..++.+.+.++.+.. +......++|++|++++|.+.... ..+ ..+++|+. ++++.|.+.+..+. ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~-L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSS-LRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSS-CEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCE-EEeecccccchhhhhHHHHhh
Confidence 567778887766532 111225677999999999987653 344 77888998 99999998843331 01345
Q ss_pred CCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccc--cc--c--cccCCccEEEeccccccccChh----hhc
Q 037308 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LL--E--ISSGNINWLFLRETAIEELPSS----IER 197 (321)
Q Consensus 128 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~--~--~~~~~L~~L~l~~~~i~~l~~~----~~~ 197 (321)
.+++|++|++++|.+.+..|..++.+++|++|++++|...+. ++ . ..+++|++|++++|.++.++.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999997666677889999999999999875432 21 1 1477899999999999876642 467
Q ss_pred cCCCCeEecccCcccccccccccCC---CCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCE
Q 037308 198 LLRLGHLDLSDCKRLKSLPSSLFKL---KSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRY 274 (321)
Q Consensus 198 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~ 274 (321)
+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.|++++|+++.+|. +..+++|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 8999999999999888777766666 69999999998877 6677664 799999999999998875 678899999
Q ss_pred EeccCCCCcc
Q 037308 275 LLLSYSERIQ 284 (321)
Q Consensus 275 L~l~~n~~l~ 284 (321)
|++++| .++
T Consensus 299 L~L~~N-~l~ 307 (310)
T 4glp_A 299 LTLDGN-PFL 307 (310)
T ss_dssp EECSST-TTS
T ss_pred EECcCC-CCC
Confidence 999999 544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.3e-20 Score=160.32 Aligned_cols=199 Identities=20% Similarity=0.134 Sum_probs=139.4
Q ss_pred CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..+++|+. ++++.|.+++..+. .+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST-LILTGNPIQSLALG--AFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE-EECTTCCCCEECTT--TTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCE-EECCCCccCccChh--hhcCCccccE
Confidence 456777777776666554 22 56777777777777666544 4566666777 77777777633333 6777788888
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCcc-ccccc--ccCCccEEEeccccccccC-hhhhccCCCC----eEec
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLG----HLDL 206 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~----~L~l 206 (321)
|++++|.+.+..+..+..+++|++|++++|.... .+|.. .+++|++|++++|.+++++ ..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 8888877554444457777888888888765433 23332 4677888888888888866 3466666666 8999
Q ss_pred ccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 207 SDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 207 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
++|.+.+..+..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 185 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 9998776554444 4458999999999877666666788999999999999988
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.8e-21 Score=161.18 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=116.2
Q ss_pred CCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhcccc-ccccCCCCCCCCCCCCccEEEccC-CCCCccc
Q 037308 70 LKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNK-LIAKTPNPTLMPHLNKLVILNLRG-SKSLKSL 146 (321)
Q Consensus 70 l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~ 146 (321)
++.+|. -.+++++|++++|+++.++. .+..+++|+. ++++.|. ++ .++. ..|.++++|++|++++ |.+....
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~-L~l~~n~~l~-~i~~-~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISR-IYVSIDVTLQ-QLES-HSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCE-EEEECCSSCC-EECT-TTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcE-EeCCCCCCcc-eeCH-hHcCCCcCCcEEECCCCCCeeEcC
Confidence 444544 23355666666666555443 3344455555 5555553 44 3321 1345555666666655 4433322
Q ss_pred CccccCcccCcEEecCCCCCccccccc-ccCCcc---EEEeccc-cccccCh-hhhccCCCC-eEecccCcccccccccc
Q 037308 147 PSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNIN---WLFLRET-AIEELPS-SIERLLRLG-HLDLSDCKRLKSLPSSL 219 (321)
Q Consensus 147 p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~---~L~l~~~-~i~~l~~-~~~~l~~L~-~L~l~~n~~~~~~~~~~ 219 (321)
+..|..+++|++|++++|.. +.+|.. .+++|+ +|++++| .++.++. .+..+++|+ +|++++|.+. .+|...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 33455555566665555432 223321 234444 6666666 6666664 366777777 8888877766 344333
Q ss_pred cCCCCCCEEEecCCC-CCCccccccCCC-CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308 220 FKLKSLGVLNLGGCS-NLQRLPECLGQL-SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 220 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
...++|+.|++++|. +.+..+..+..+ ++|+.|++++|+++.+|.. .+++|++|+++++..
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 333778888888774 554445567777 7888888888888877753 567777887777643
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.5e-23 Score=194.16 Aligned_cols=274 Identities=15% Similarity=0.082 Sum_probs=138.2
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC--cC-CcC----ceeEEeccCCcccc--
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS--NL-SAE----KLVFLKVPYSDIEQ-- 94 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~--~~-~l~----~L~~L~l~~~~l~~-- 94 (321)
+..+++|++|++++|.+++... ...+..+.. ++|++|++++|.+..... .. .++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHH--HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHH--HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 5667777777777776442211 112223333 677777777776543111 11 233 57777777777662
Q ss_pred ---cccCCCCCCChHhHHhhccccccccCCC---CCCCCCCCCccEEEccCCCCCcc----cCccccCcccCcEEecCCC
Q 037308 95 ---LWNGEKHYSNLNQIINATCNKLIAKTPN---PTLMPHLNKLVILNLRGSKSLKS----LPSGIFNLEFLTKLDLSGC 164 (321)
Q Consensus 95 ---~~~~~~~l~~L~~~l~l~~~~l~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~~ 164 (321)
++..+..+++|++ +++++|.+.+..+. .......++|++|++++|.+... ++..+..+++|++|++++|
T Consensus 102 ~~~l~~~l~~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQE-LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHHTTSCTTCCE-EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHccCCceeE-EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3455566667777 77776666521110 00122244677777777664432 2333445566666666665
Q ss_pred CCccccccc-------ccCCccEEEeccccccc-----cChhhhccCCCCeEecccCcccccc-----cccccCCCCCCE
Q 037308 165 SKLKRLLEI-------SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKSL-----PSSLFKLKSLGV 227 (321)
Q Consensus 165 ~~~~~~~~~-------~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~ 227 (321)
......+.. ..++|++|++++|.++. ++..+..+++|++|++++|.+.+.. +.....+++|+.
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 432211111 13356666666665554 3444455555666666555543321 111123445555
Q ss_pred EEecCCCCCCc----cccccCCCC-----------------------------CCcEEEcccCCCcc-----cchhhhcc
Q 037308 228 LNLGGCSNLQR----LPECLGQLS-----------------------------SPIILNLAKTNVER-----IPESIIQL 269 (321)
Q Consensus 228 L~l~~~~~~~~----~~~~~~~~~-----------------------------~L~~L~l~~n~l~~-----l~~~l~~l 269 (321)
|++++|.+... ++..+..++ +|+.|++++|.++. ++..+..+
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 55555444332 233333344 45555555555442 33444555
Q ss_pred CCcCEEeccCCCCccccc---C-------ccccccccccccCc
Q 037308 270 FVLRYLLLSYSERIQSVS---L-------PLARGILEDTQRSP 302 (321)
Q Consensus 270 ~~L~~L~l~~n~~l~~~~---~-------~~~l~~l~~~~~~~ 302 (321)
++|++|++++| .+++.. + .++++.|++.++.-
T Consensus 341 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 341 RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 66666666666 454432 1 23666666666543
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=3.6e-23 Score=191.66 Aligned_cols=233 Identities=17% Similarity=0.120 Sum_probs=116.7
Q ss_pred hhhcCCCCceEEEEeecCCCCccccceeccCCCCc--CcccEEEecCCCCCC-----CCCcC-CcCceeEEeccCCcccc
Q 037308 23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--AEVKYFHWHGYPLKS-----LPSNL-SAEKLVFLKVPYSDIEQ 94 (321)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~--~~L~~l~l~~~~l~~-----~~~~~-~l~~L~~L~l~~~~l~~ 94 (321)
..+..+++|++|++++|.+++..+. .....+.. ++|++|++++|.+.. ++..+ .+++|++|++++|.+..
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVH--CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHH--HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHH--HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4566677888888887765432111 11112222 257777777776552 23333 56666666666666543
Q ss_pred c----------------------------------ccCCCCCCChHhHHhhccccccccCCCCCCCC-----CCCCccEE
Q 037308 95 L----------------------------------WNGEKHYSNLNQIINATCNKLIAKTPNPTLMP-----HLNKLVIL 135 (321)
Q Consensus 95 ~----------------------------------~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~-----~l~~L~~L 135 (321)
. ...+..+++|++ ++++.|.+.+.... .+. ..++|++|
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~-L~L~~n~i~~~~~~--~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE-LTVSNNDINEAGVR--VLCQGLKDSPCQLEAL 204 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE-EECCSSBCHHHHHH--HHHHHHHHSCCCCCEE
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCE-EECcCCCcchHHHH--HHHHHHhcCCCCceEE
Confidence 1 111122333444 44444444311110 111 13356666
Q ss_pred EccCCCCCcc----cCccccCcccCcEEecCCCCCccc----cccc---ccCCccEEEeccccccc-----cChhhhccC
Q 037308 136 NLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKR----LLEI---SSGNINWLFLRETAIEE-----LPSSIERLL 199 (321)
Q Consensus 136 ~l~~n~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~----~~~~---~~~~L~~L~l~~~~i~~-----l~~~~~~l~ 199 (321)
++++|.+... ++..+..+++|++|++++|..... +... .+++|++|++++|.++. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 6666553331 344455567777777777643221 1111 25677777777777775 555566677
Q ss_pred CCCeEecccCccccccccccc-----CCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc
Q 037308 200 RLGHLDLSDCKRLKSLPSSLF-----KLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+|++|++++|.+.+..+..+. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|.++
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 777777777765443222221 123555555555554432 2333334445555555555444
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.3e-20 Score=161.06 Aligned_cols=200 Identities=19% Similarity=0.181 Sum_probs=137.0
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
.++..+.+.++.+..+.....+++|+.|+++++.++.+ .++..+++|+. +++++|.+. .++ .+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRY-LALGGNKLH-DIS---ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCE-EECTTSCCC-CCG---GGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCcccc-cccccCCCCcE-EECCCCCCC-Cch---hhcCCCCCCEEEC
Confidence 44455555555555444434677788888877777653 23344444444 444444444 222 3444444444444
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+.+..+..+.. +++|++|++++|.+++++.. +..+++|++|++++|.+.+..+
T Consensus 93 ~~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDK----------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp TTSCCCCCCTTTTTT----------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCccChhHhcC----------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 444433222222333 45566666666667776644 6889999999999999887777
Q ss_pred ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~ 285 (321)
..++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.++.++. .+..+++|++|++++|+....
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 778999999999999999887777778999999999999999997775 578899999999999965554
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.3e-19 Score=171.04 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=182.3
Q ss_pred hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccc---ccCCCC
Q 037308 25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQL---WNGEKH 101 (321)
Q Consensus 25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~---~~~~~~ 101 (321)
+....+++.|++.+|.+.+. .......|+.+.+..+.....+....+++|+.+++++|.+... +.....
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~--------~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp GGSCCCCSEEEEESCEESSC--------CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccchhhhhhhcccccccCc--------CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 44556777788777653211 1122267788888877776666666788899999988887643 223345
Q ss_pred CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCc
Q 037308 102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNI 178 (321)
Q Consensus 102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L 178 (321)
..+++. +++..+.+. ..+. .+..+++|+.++++.+......+ ..+..+++++.++++.|......+.. .++++
T Consensus 396 ~~~L~~-L~~~~~~~~-~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 396 TISLKY-LDLSFNGVI-TMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp CSCCCE-EECCSCSEE-EECS--CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhh-hhccccccc-cccc--cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 666666 777777766 4544 67788889999888876544433 34677888888888887654433332 46788
Q ss_pred cEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308 179 NWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK 256 (321)
Q Consensus 179 ~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 256 (321)
+.|++++|.+.. .|..+..+++|++|++++|.+.+..|..++++++|+.|++++|++.+..+..+.++++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 889998886543 556678888899999999888888888888899999999999888887777888889999999999
Q ss_pred CCCcccc-hhhhcc-CCcCEEeccCCCCcccc
Q 037308 257 TNVERIP-ESIIQL-FVLRYLLLSYSERIQSV 286 (321)
Q Consensus 257 n~l~~l~-~~l~~l-~~L~~L~l~~n~~l~~~ 286 (321)
|+++.++ ..+..+ ++|++|++++|+.-.+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9988655 566776 58999999988665543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=5e-22 Score=180.03 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=163.0
Q ss_pred hccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc------------CCcCceeE
Q 037308 18 IRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN------------LSAEKLVF 84 (321)
Q Consensus 18 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~------------~~l~~L~~ 84 (321)
+..-...+..+++|++|++++|.+++..+ ......+.. ++|++|++++|.+..+... ..+++|++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 34444667778889999998887553322 112233555 8888888888766544321 15677777
Q ss_pred EeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc----cCccccCc-------
Q 037308 85 LKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS----LPSGIFNL------- 153 (321)
Q Consensus 85 L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l------- 153 (321)
|++++|.+... +. . .++. .+..+++|++|++++|.+... ++..+..+
T Consensus 99 L~Ls~n~l~~~--~~------~------------~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~ 156 (386)
T 2ca6_A 99 VRLSDNAFGPT--AQ------E------------PLID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156 (386)
T ss_dssp EECCSCCCCTT--TH------H------------HHHH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCcCCHH--HH------H------------HHHH--HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence 77777776531 00 0 1222 345567788888888875432 22223333
Q ss_pred --ccCcEEecCCCCCc-ccccc---c--ccCCccEEEeccccccc------cChhhhccCCCCeEecccCccc----ccc
Q 037308 154 --EFLTKLDLSGCSKL-KRLLE---I--SSGNINWLFLRETAIEE------LPSSIERLLRLGHLDLSDCKRL----KSL 215 (321)
Q Consensus 154 --~~L~~L~l~~~~~~-~~~~~---~--~~~~L~~L~l~~~~i~~------l~~~~~~l~~L~~L~l~~n~~~----~~~ 215 (321)
++|++|++++|... ..++. . .+++|++|++++|.++. ++..+..+++|++|++++|.+. ..+
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 78888888887654 22331 1 36688888888888872 2336778888999999998875 556
Q ss_pred cccccCCCCCCEEEecCCCCCCc----ccccc--CCCCCCcEEEcccCCCcc-----cchhh-hccCCcCEEeccCCCCc
Q 037308 216 PSSLFKLKSLGVLNLGGCSNLQR----LPECL--GQLSSPIILNLAKTNVER-----IPESI-IQLFVLRYLLLSYSERI 283 (321)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~n~l~~-----l~~~l-~~l~~L~~L~l~~n~~l 283 (321)
+..+..+++|+.|++++|.+.+. ++..+ +.+++|+.|++++|.++. +|..+ ..+++|++|++++| .+
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l 315 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RF 315 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BS
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cC
Confidence 77788888999999999887655 45555 348889999999999886 77776 56899999999998 44
Q ss_pred c
Q 037308 284 Q 284 (321)
Q Consensus 284 ~ 284 (321)
.
T Consensus 316 ~ 316 (386)
T 2ca6_A 316 S 316 (386)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=6.4e-20 Score=164.03 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=123.4
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccc-ccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCcc
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQ-LWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLV 133 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~-~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~ 133 (321)
++++.|++++|.++.+|.. + ++++|++|++++|++.+ ++. .+..++++.+.+.+++|.++ .++. ..|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~-~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP-EAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECT-TSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCc-hhhhhccccc
Confidence 5677777777777777754 3 67777777777777644 333 34556665552444667776 4431 2567777777
Q ss_pred EEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc----ccCCccEEEeccccccccChhhhccCCCCeEecccC
Q 037308 134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI----SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDC 209 (321)
Q Consensus 134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n 209 (321)
+|++++|.+....+..+....++..+++..+..+..++.. ....++.|++++|.+++++.......+|+++++.++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 7777777644333333444556666666655555544432 123455666666666666655444455666666654
Q ss_pred ccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC-CCcccchhhhccCCcCEEeccCC
Q 037308 210 KRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT-NVERIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 210 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n 280 (321)
+..+.+| ..++.+++|+.|++++|++.. +|. ..+.+|+.|.+.++ .++.+| .+..+++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4344444 345666666666666655433 222 12344555554333 345555 2555666666666543
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3.1e-21 Score=171.37 Aligned_cols=244 Identities=20% Similarity=0.193 Sum_probs=150.7
Q ss_pred CceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-CCcCceeEEeccCCcccc--cccCCCCCCChH
Q 037308 30 KLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-LSAEKLVFLKVPYSDIEQ--LWNGEKHYSNLN 106 (321)
Q Consensus 30 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~ 106 (321)
.++.++++++.+... ....+..++++.+++.++.+...+.. +.+++|++|++++|.+.. ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~~~------~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHPD------VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCHH------HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCCHH------HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 477888877653311 11111116788888888876554443 478888888888888754 444556677777
Q ss_pred hHHhhccccccccCCCCCCCCCCCCccEEEccCC-CCCc-ccCccccCcccCcEEecCCCCCccc--cccc--ccC-Ccc
Q 037308 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS-KSLK-SLPSGIFNLEFLTKLDLSGCSKLKR--LLEI--SSG-NIN 179 (321)
Q Consensus 107 ~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~-~L~ 179 (321)
+ ++++.|.+.+..+. .+..+++|++|++++| .+.. .++..+..+++|++|++++|..++. ++.. .++ +|+
T Consensus 122 ~-L~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 122 N-LSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp E-EECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred E-EeCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 7 77777777644444 5666778888888877 3332 2455566777888888887733332 2222 356 788
Q ss_pred EEEecccc--cc--ccChhhhccCCCCeEecccCc-ccccccccccCCCCCCEEEecCCC-CCCccccccCCCCCCcEEE
Q 037308 180 WLFLRETA--IE--ELPSSIERLLRLGHLDLSDCK-RLKSLPSSLFKLKSLGVLNLGGCS-NLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 180 ~L~l~~~~--i~--~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 253 (321)
+|++++|. ++ .++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|. ........++.+++|+.|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 88887773 43 356566677778888887777 455556667777788888887774 2222223466677788888
Q ss_pred cccCCCcc-cchhhhccCCcCEEeccCCCCcccc
Q 037308 254 LAKTNVER-IPESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 254 l~~n~l~~-l~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
+++| ++. .-..+. ..++.|++++| .++.+
T Consensus 279 l~~~-i~~~~~~~l~--~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 279 VFGI-VPDGTLQLLK--EALPHLQINCS-HFTTI 308 (336)
T ss_dssp CTTS-SCTTCHHHHH--HHSTTSEESCC-CSCCT
T ss_pred ccCc-cCHHHHHHHH--hhCcceEEecc-cCccc
Confidence 8777 431 111221 22444456666 44443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=3.6e-20 Score=156.68 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=158.5
Q ss_pred ccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCC-CCcccCccccCcccCcEEecCCCCCcccc
Q 037308 92 IEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRL 170 (321)
Q Consensus 92 l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~~~~~~~~ 170 (321)
++.++. -.++++. ++++.|.++ .++. ..+.++++|++|++++|. +....+..|..+++|++|++++|..++.+
T Consensus 23 l~~ip~---~~~~l~~-L~l~~n~l~-~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS---LPPSTQT-LKLIETHLR-TIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC---CCTTCCE-EEEESCCCS-EECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC---CCCcccE-EEEeCCcce-EECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 555555 2236777 999999999 5552 268899999999999997 44444447889999999999984445555
Q ss_pred ccc---ccCCccEEEeccccccccChhhhccCCCC---eEecccC-cccccccccccCCCCCC-EEEecCCCCCCcccc-
Q 037308 171 LEI---SSGNINWLFLRETAIEELPSSIERLLRLG---HLDLSDC-KRLKSLPSSLFKLKSLG-VLNLGGCSNLQRLPE- 241 (321)
Q Consensus 171 ~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~- 241 (321)
+.. .+++|++|++++|.++++|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+. .+|.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 532 57899999999999999987 77888888 9999999 77766666789999999 9999998876 5544
Q ss_pred ccCCCCCCcEEEcccCC-Ccccc-hhhhcc-CCcCEEeccCCCCccccc--Ccccccccccccc
Q 037308 242 CLGQLSSPIILNLAKTN-VERIP-ESIIQL-FVLRYLLLSYSERIQSVS--LPLARGILEDTQR 300 (321)
Q Consensus 242 ~~~~~~~L~~L~l~~n~-l~~l~-~~l~~l-~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~ 300 (321)
.+.. ++|+.|++++|+ ++.++ ..+..+ ++|++|++++| .++.+| ..++++.|++.++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence 4444 899999999995 99887 467888 99999999999 888887 5667777776653
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=5.5e-19 Score=150.54 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=112.9
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
...+.+++.++.+..+|..+. ++++.|++++|.++.+.. . .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~------------------------~--~~~~l~~L~~L~L 66 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD------------------------A--TFRGLTKLTWLNL 66 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT------------------------T--TTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH------------------------h--HhcCcccCCEEEC
Confidence 456778888888888776643 577788887777765432 1 3444555555555
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKS 214 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~ 214 (321)
++|.+.+..+..+..+++|++|++++|......+.. .+++|++|++++|.+++++.. +..+++|++|++++|.+.+.
T Consensus 67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 555544333334445555555555554322211111 245556666666666666643 56777888888888877766
Q ss_pred ccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 215 LPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 215 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
.+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666778888888888888777666667778888888888888876
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=9.6e-19 Score=149.06 Aligned_cols=169 Identities=17% Similarity=0.146 Sum_probs=142.8
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET 186 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 186 (321)
++++.+.++ .+|. .+. +.++.|++++|.+.+..+..+.++++|++|++++|...+..+.. .+++|++|++++|
T Consensus 19 l~~~~~~l~-~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 19 VDCQGKSLD-SVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp EECTTCCCS-SCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EecCCCCcc-ccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 666677777 6765 443 68999999999977766777999999999999998655444332 5789999999999
Q ss_pred cccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-
Q 037308 187 AIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE- 264 (321)
Q Consensus 187 ~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~- 264 (321)
.+++++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 9999874 47889999999999999887776778899999999999998887766689999999999999999998775
Q ss_pred hhhccCCcCEEeccCCCC
Q 037308 265 SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 265 ~l~~l~~L~~L~l~~n~~ 282 (321)
.+..+++|++|++++|+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSCCB
T ss_pred HHhCCCCCCEEEeeCCce
Confidence 678899999999999944
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=7.2e-21 Score=172.40 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=143.6
Q ss_pred CCCCCCccEEEccCCCCCc----ccCccccCcccCcEEecCCCCCccccc----cc--cc---------CCccEEEeccc
Q 037308 126 MPHLNKLVILNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKRLL----EI--SS---------GNINWLFLRET 186 (321)
Q Consensus 126 ~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~----~~--~~---------~~L~~L~l~~~ 186 (321)
+..+++|++|++++|.+.. .+|..+..+++|++|++++|......+ .. .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4678999999999999765 367678889999999999987533222 11 12 89999999999
Q ss_pred ccc--ccC---hhhhccCCCCeEecccCcccc-----cccccccCCCCCCEEEecCCCCC----CccccccCCCCCCcEE
Q 037308 187 AIE--ELP---SSIERLLRLGHLDLSDCKRLK-----SLPSSLFKLKSLGVLNLGGCSNL----QRLPECLGQLSSPIIL 252 (321)
Q Consensus 187 ~i~--~l~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L 252 (321)
.++ .++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ..++..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 997 344 457788999999999998773 23447889999999999999875 6677888999999999
Q ss_pred EcccCCCcc-----cchhhhc--cCCcCEEeccCCCCccc-----cc--C---ccccccccccccCccchh
Q 037308 253 NLAKTNVER-----IPESIIQ--LFVLRYLLLSYSERIQS-----VS--L---PLARGILEDTQRSPHMDH 306 (321)
Q Consensus 253 ~l~~n~l~~-----l~~~l~~--l~~L~~L~l~~n~~l~~-----~~--~---~~~l~~l~~~~~~~~~~~ 306 (321)
++++|.++. ++..+.. +++|++|++++| .++. ++ + .++++.|++.++......
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999984 4666644 899999999999 6766 66 3 478889988887655444
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.1e-20 Score=167.86 Aligned_cols=236 Identities=17% Similarity=0.163 Sum_probs=188.0
Q ss_pred CcccEEEecCCCCCCCCCcC-Cc--CceeEEeccCCcccccccCCCCCCChHhHHhhcccccccc-CCCCCCCCCCCCcc
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SA--EKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK-TPNPTLMPHLNKLV 133 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l--~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~-~~~~~~~~~l~~L~ 133 (321)
..++.++++++.+. +..+ .+ ++++.+++++|.+.........+++++. ++++.|.+.+. ++. .+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~-L~L~~~~l~~~~~~~--~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSNSVIEVSTLHG--ILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCE-EECTTCEECHHHHHH--HHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCE-EEccCCCcCHHHHHH--HHhhCCCCC
Confidence 44788999887765 2322 44 8999999999999988777888999999 99999988744 554 678899999
Q ss_pred EEEccCCCCCcccCccccCcccCcEEecCCCCCccc--cccc--ccCCccEEEeccc-cccc--cChhhhccC-CCCeEe
Q 037308 134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LLEI--SSGNINWLFLRET-AIEE--LPSSIERLL-RLGHLD 205 (321)
Q Consensus 134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~~L~~L~l~~~-~i~~--l~~~~~~l~-~L~~L~ 205 (321)
+|++++|.+....+..++.+++|++|++++|..++. ++.. .+++|++|++++| .+++ ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999987767777788999999999999854542 4432 5889999999999 8886 667788899 999999
Q ss_pred cccC--ccc-ccccccccCCCCCCEEEecCCC-CCCccccccCCCCCCcEEEcccCC-Cc-ccchhhhccCCcCEEeccC
Q 037308 206 LSDC--KRL-KSLPSSLFKLKSLGVLNLGGCS-NLQRLPECLGQLSSPIILNLAKTN-VE-RIPESIIQLFVLRYLLLSY 279 (321)
Q Consensus 206 l~~n--~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~l~~L~~L~l~~ 279 (321)
+++| .+. +.++..+..+++|+.|++++|. +....+..+..+++|+.|++++|. +. .....+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 444 4566777889999999999998 556677788999999999999995 43 2223578899999999999
Q ss_pred CCCccc--cc-Ccccccccccccc
Q 037308 280 SERIQS--VS-LPLARGILEDTQR 300 (321)
Q Consensus 280 n~~l~~--~~-~~~~l~~l~~~~~ 300 (321)
| +.. +. +...++.|++..+
T Consensus 282 ~--i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 282 I--VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp S--SCTTCHHHHHHHSTTSEESCC
T ss_pred c--cCHHHHHHHHhhCcceEEecc
Confidence 9 332 22 4456777776553
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.9e-19 Score=159.73 Aligned_cols=245 Identities=19% Similarity=0.227 Sum_probs=165.1
Q ss_pred cEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE-EEcc
Q 037308 61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI-LNLR 138 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~-L~l~ 138 (321)
+.++.+++.++.+|..+ .+++++|++++|+|+.++. .+..+++|+. |+++.|.+.+.++. ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~-L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEK-IEISQNDVLEVIEA-DVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCE-EEEECCTTCCEECT-TSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCE-EECcCCCCCCccCh-hHhhcchhhhhhhccc
Confidence 45667777788887765 4678888888888888875 4577888888 88888887534542 25677777665 4555
Q ss_pred CCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc-ccccccChh-hhcc-CCCCeEecccCccc
Q 037308 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE-TAIEELPSS-IERL-LRLGHLDLSDCKRL 212 (321)
Q Consensus 139 ~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-~~i~~l~~~-~~~l-~~L~~L~l~~n~~~ 212 (321)
+|.+....|..|..+++|++|++++|... .++.. ...++..|++.+ +.+..++.. +..+ ..++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 56655444666788888888888886543 33322 344566777754 567776643 4444 35778888888865
Q ss_pred ccccccccCCCCCCEEEecCCCCCCcccc-ccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCcccccCccc
Q 037308 213 KSLPSSLFKLKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLA 291 (321)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~~~ 291 (321)
. ++.......+|+.+++.+++..+.+|. .|.++++|+.||+++|+++.+|. ..+.+|++|.+.++..++.+|...+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCCchh
Confidence 4 444444566788888887666666664 56788888888888888888875 3366777888878878888774455
Q ss_pred cccccccccCccchhhHHHHH
Q 037308 292 RGILEDTQRSPHMDHKLAVRW 312 (321)
Q Consensus 292 l~~l~~~~~~~~~~~~l~~~~ 312 (321)
+..|.......+........|
T Consensus 245 l~~L~~l~l~~~~~c~~~~~~ 265 (350)
T 4ay9_X 245 LVALMEASLTYPSHCCAFANW 265 (350)
T ss_dssp CCSCCEEECSCHHHHHHHHHS
T ss_pred CcChhhCcCCCCccccchhhh
Confidence 555555555555444444444
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=157.44 Aligned_cols=216 Identities=18% Similarity=0.062 Sum_probs=163.7
Q ss_pred CcCceeEEeccCCccccc--c--cCCCCCCChHhHHhhccccccccCCCCCCC--CCCCCccEEEccCCCCCcccC----
Q 037308 78 SAEKLVFLKVPYSDIEQL--W--NGEKHYSNLNQIINATCNKLIAKTPNPTLM--PHLNKLVILNLRGSKSLKSLP---- 147 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~--~--~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p---- 147 (321)
....++.+.+.++.+... . .....++++++ ++++.|.+.+..+. .+ ..+++|++|++++|.+.+..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKE-LTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCE-EEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeE-EEeeCCEeccchhh--hhhhccCCCCCEEEeecccccchhhhhHH
Confidence 455678888888776431 0 11123455777 99999999866665 55 889999999999999766544
Q ss_pred ccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc---cCh--hhhccCCCCeEecccCcccccc--cc-
Q 037308 148 SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE---LPS--SIERLLRLGHLDLSDCKRLKSL--PS- 217 (321)
Q Consensus 148 ~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~n~~~~~~--~~- 217 (321)
..+..+++|++|++++|......+.. .+++|++|++++|.+.+ ++. .+..+++|++|++++|.+.... +.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 23456899999999998765544433 57899999999999765 332 2467899999999999975321 11
Q ss_pred cccCCCCCCEEEecCCCCCCccccccCCC---CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCcccccCc---cc
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQL---SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP---LA 291 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~---~~ 291 (321)
.++.+++|+.|++++|.+.+..|..+..+ ++|+.|++++|+++.+|..+. ++|++|++++| .++.+|.+ ++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~ 295 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPE 295 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCC
Confidence 35788999999999999988877777766 699999999999999997664 89999999999 88887733 45
Q ss_pred cccccccc
Q 037308 292 RGILEDTQ 299 (321)
Q Consensus 292 l~~l~~~~ 299 (321)
++.|++.+
T Consensus 296 L~~L~L~~ 303 (310)
T 4glp_A 296 VDNLTLDG 303 (310)
T ss_dssp CSCEECSS
T ss_pred ccEEECcC
Confidence 56665554
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.2e-18 Score=151.67 Aligned_cols=172 Identities=24% Similarity=0.279 Sum_probs=95.4
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
.+++|+.|++++|.+..+ .++..+++|+. ++++.|.++ .++ .+..+++|++|++++|.+ ..+|. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~-L~L~~n~l~-~~~---~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTK-LFLNGNKLT-DIK---PLANLKNLGWLFLDENKV-KDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCE-EECCSSCCC-CCG---GGTTCTTCCEEECCSSCC-CCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCE-EEccCCccC-CCc---ccccCCCCCEEECCCCcC-CCChh-hccCCCCC
Confidence 466666666666666554 23444455555 555555554 333 256677777777777763 33443 66777777
Q ss_pred EEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308 158 KLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 236 (321)
+|++++|.... ++.. .+++|+.|++++|.++++ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 77777754322 2222 355566666666666555 235555566666666655444332 555556666666655443
Q ss_pred CccccccCCCCCCcEEEcccCCCcccc
Q 037308 237 QRLPECLGQLSSPIILNLAKTNVERIP 263 (321)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~ 263 (321)
+ ++ .+..+++|+.|++++|+++..|
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 3 22 3555556666666665555433
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.9e-18 Score=160.33 Aligned_cols=187 Identities=22% Similarity=0.263 Sum_probs=135.8
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
.+|+.|++++|.+..+|..+ .++|++|++++|.++.++ ..+++|+. ++++.|.++ .+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~-L~Ls~N~l~-~ip~---l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEY-LDACDNRLS-TLPE---LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCE-EECCSSCCS-CCCC---CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCE-EEccCCCCC-Ccch---hhc--CCCEEEC
Confidence 48899999999988888765 378999999999998776 44677888 888888888 5653 333 8888888
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 217 (321)
++|.+.+ +|. .+++|+.|++++|.. +.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.+. .+|.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh
Confidence 8887544 665 578888888888654 34555 37788888888888888776 44 77888888887766 4444
Q ss_pred cccCCCCC-------CEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhcc
Q 037308 218 SLFKLKSL-------GVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQL 269 (321)
Q Consensus 218 ~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l 269 (321)
+.. +| +.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 443 56 77888876654 46666667788888888888877 556655544
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=3.9e-20 Score=166.19 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=120.4
Q ss_pred eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-C-cccEEEecCCCCCCCCCc-C-Cc-----C
Q 037308 10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-A-EVKYFHWHGYPLKSLPSN-L-SA-----E 80 (321)
Q Consensus 10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~-~L~~l~l~~~~l~~~~~~-~-~l-----~ 80 (321)
++++.+......+..+...++|++|++++|.+++... ......+.. + +|+.|++++|.+...... + .+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3455554444444455555669999998887654322 111133333 5 788888888887655332 2 22 8
Q ss_pred ceeEEeccCCcccccccC-----CCCC-CChHhHHhhccccccccCCCC---CCCCC-CCCccEEEccCCCCCc----cc
Q 037308 81 KLVFLKVPYSDIEQLWNG-----EKHY-SNLNQIINATCNKLIAKTPNP---TLMPH-LNKLVILNLRGSKSLK----SL 146 (321)
Q Consensus 81 ~L~~L~l~~~~l~~~~~~-----~~~l-~~L~~~l~l~~~~l~~~~~~~---~~~~~-l~~L~~L~l~~n~~~~----~~ 146 (321)
+|++|++++|.++..... +... ++|+. ++++.|.++ ..+.. ..+.. .++|++|++++|.+.. .+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV-LDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE-EECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccE-EECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 888888888888753221 2222 45555 555555555 22210 00222 2355566666555332 12
Q ss_pred CccccCcc-cCcEEecCCCCCccccccc------cc-CCccEEEeccccccc-----cChhhhc-cCCCCeEecccCccc
Q 037308 147 PSGIFNLE-FLTKLDLSGCSKLKRLLEI------SS-GNINWLFLRETAIEE-----LPSSIER-LLRLGHLDLSDCKRL 212 (321)
Q Consensus 147 p~~l~~l~-~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~i~~-----l~~~~~~-l~~L~~L~l~~n~~~ 212 (321)
+..+..++ +|+.|++++|......+.. .. ++|++|++++|.+++ ++..+.. .++|++|++++|.+.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22223333 5555555555432222110 11 355555555555554 3333333 235555555555544
Q ss_pred cccc----ccccCCCCCCEEEecCCCCCC-------ccccccCCCCCCcEEEcccCCCc
Q 037308 213 KSLP----SSLFKLKSLGVLNLGGCSNLQ-------RLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 213 ~~~~----~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+..+ ..+..+++|+.|++++|.+.. .++..+..+++|+.||+++|.+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3222 223444555555555544211 12223444455555555555554
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=9.7e-18 Score=158.32 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=81.4
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|++|++++|.+..+| ..+++|++|++++|.++.++. +.. +|+. |+++.|.++ .+| . .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~-L~Ls~N~l~-~lp---~--~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKH-LDVDNNQLT-MLP---E--LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCE-EECCSSCCS-CCC---C--CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCE-EECCCCcCC-CCC---C--cCccccEEeC
Confidence 45555555555555555 234555555555555555444 222 4555 555555555 343 1 3455555555
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCC-------CeEecccCc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRL-------GHLDLSDCK 210 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L-------~~L~l~~n~ 210 (321)
++|.+. .+|. .+++|+.|++++|.. +.+|.. .++|++|++++|.++.+|. +.. +| +.|++++|.
T Consensus 148 s~N~l~-~lp~---~l~~L~~L~Ls~N~L-~~lp~l-~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 148 DNNQLT-MLPE---LPTSLEVLSVRNNQL-TFLPEL-PESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCC-SCCCCC-CTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC
T ss_pred CCCccC-cCCC---cCCCcCEEECCCCCC-CCcchh-hCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc
Confidence 555532 2443 345555555555432 223332 3555555555555555554 322 34 555555555
Q ss_pred ccccccccccCCCCCCEEEecCCCCCCccccccC
Q 037308 211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLG 244 (321)
Q Consensus 211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 244 (321)
+. .+|..+..+++|+.|++++|++.+.+|..++
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 43 3444444455555555555555555444443
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.4e-18 Score=138.60 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=127.9
Q ss_pred CCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccc-cChhhhccCCCC
Q 037308 125 LMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEE-LPSSIERLLRLG 202 (321)
Q Consensus 125 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~ 202 (321)
....+++|++|++++|.+ ..+| .+..+++|++|++++| .+..++.. .+++|++|++++|.++. .+..+..+++|+
T Consensus 39 ~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred ChhhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 346678999999999984 4667 4889999999999998 44444433 57899999999999987 566788899999
Q ss_pred eEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308 203 HLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 203 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 282 (321)
+|++++|.+.+..+..++.+++|+.|++++|...+.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++| .
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N-~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ-T 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc-c
Confidence 99999999888778888999999999999988566665 6888999999999999999887 7888999999999999 5
Q ss_pred cc
Q 037308 283 IQ 284 (321)
Q Consensus 283 l~ 284 (321)
++
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=4.8e-18 Score=161.89 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=100.6
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
..+..+.+..+.+..+.....+++|+.|++++|.+..++ .+..+++|+. |+++.|.+. .++ .+..+++|+.|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~-L~Ls~N~l~-~~~---~l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTK-LFLNGNKLT-DIK---PLTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCE-EECTTSCCC-CCG---GGGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCE-EEeeCCCCC-CCh---hhccCCCCCEEEC
Confidence 444455555555555444446777888888877777653 4556666666 666666665 443 2556666666666
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+. .+| .+..+++|+.|++++|.... ++.. .+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+..|
T Consensus 95 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 95 DENKIK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCC-CCT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCC-CCh-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh
Confidence 666532 333 35556666666666654322 2222 344555555555555554 234445555555555555444333
Q ss_pred ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44555555555555444332 23444555555555555544
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.1e-19 Score=163.17 Aligned_cols=244 Identities=15% Similarity=0.066 Sum_probs=171.7
Q ss_pred EEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-----cC-CcC-ceeEEeccCCcccccc-cCCCCC-
Q 037308 33 FLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-----NL-SAE-KLVFLKVPYSDIEQLW-NGEKHY- 102 (321)
Q Consensus 33 ~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-----~~-~l~-~L~~L~l~~~~l~~~~-~~~~~l- 102 (321)
+++++.|.+++..+ ..+.. .+|++|++++|.+...+. .+ .++ +|++|++++|.++... ..+..+
T Consensus 2 ~~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 2 NYKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EEECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred ccccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 45677776554322 23344 669999999999988764 23 677 8999999999998752 222222
Q ss_pred ----CChHhHHhhccccccccCCCCCC----CCCC-CCccEEEccCCCCCcccCccc----cC-cccCcEEecCCCCCcc
Q 037308 103 ----SNLNQIINATCNKLIAKTPNPTL----MPHL-NKLVILNLRGSKSLKSLPSGI----FN-LEFLTKLDLSGCSKLK 168 (321)
Q Consensus 103 ----~~L~~~l~l~~~~l~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~p~~l----~~-l~~L~~L~l~~~~~~~ 168 (321)
++|++ ++++.|.+++..+. . +..+ ++|++|++++|.+....+..+ .. .++|++|++++|....
T Consensus 76 ~~~~~~L~~-L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 76 AAIPANVTS-LNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HTSCTTCCE-EECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred hccCCCccE-EECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 78888 99999999833321 2 3344 799999999998654433332 33 3699999999986543
Q ss_pred c----cccc--cc-CCccEEEeccccccccCh-----hhhcc-CCCCeEecccCccccc----ccccccC-CCCCCEEEe
Q 037308 169 R----LLEI--SS-GNINWLFLRETAIEELPS-----SIERL-LRLGHLDLSDCKRLKS----LPSSLFK-LKSLGVLNL 230 (321)
Q Consensus 169 ~----~~~~--~~-~~L~~L~l~~~~i~~l~~-----~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~l 230 (321)
. ++.. .. ++|++|++++|.+++... .+..+ ++|++|++++|.+.+. ++..+.. .++|+.|++
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 2 2221 22 489999999999987553 34445 5999999999997763 4444555 459999999
Q ss_pred cCCCCCCccc----cccCCCCCCcEEEcccCCCcc--------cchhhhccCCcCEEeccCCCCcccc
Q 037308 231 GGCSNLQRLP----ECLGQLSSPIILNLAKTNVER--------IPESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 231 ~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~--------l~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
++|.+....+ ..+..+++|+.|++++|.+.. ++..+..++.|++|++++| .+...
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 9998876543 445778999999999998443 3334567788999999999 55543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.6e-17 Score=143.25 Aligned_cols=168 Identities=20% Similarity=0.188 Sum_probs=131.8
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|+.+++++|.+..++....+++|++|++++|+++.++. +..+++|+. ++++.|.++ .++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW-LFLDENKVK-DLS---SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE-EECCSSCCC-CGG---GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCE-EECCCCcCC-CCh---hhccCCCCCEEEC
Confidence 6777777877777777654467788888888888777655 677777777 788777777 554 5778889999999
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+. .++ .+..+++|+.|++++|.... ++.. .+++|+.|++++|.+++++. +..+++|++|++++|.+.+ ++
T Consensus 120 ~~n~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~ 194 (291)
T 1h6t_A 120 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR 194 (291)
T ss_dssp TTSCCC-CCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG
T ss_pred CCCcCC-CCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch
Confidence 998844 344 47788999999999876443 3332 57899999999999999876 8899999999999998765 44
Q ss_pred ccccCCCCCCEEEecCCCCCC
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQ 237 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~ 237 (321)
.+..+++|+.|++++|.+..
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhccCCCCCEEECcCCcccC
Confidence 38899999999999987654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.1e-18 Score=161.70 Aligned_cols=169 Identities=20% Similarity=0.184 Sum_probs=132.9
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
.+|+.|++++|.+..++....+++|+.|++++|.+..++. +..+++|+. |+++.|.+. .++ .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~-L~Ls~N~l~-~l~---~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGW-LFLDENKIK-DLS---SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCE-EECCSSCCC-CCT---TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCE-EECcCCCCC-CCh---hhccCCCCCEEEe
Confidence 7888888888888888765578889999999888888765 778888888 888888887 554 5788888999999
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+. .++ .+..+++|+.|++++|.... ++.. .+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.
T Consensus 117 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 117 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp TTSCCC-CCG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred cCCCCC-CCc-cccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 988744 344 37788889999998876443 3332 57888899999888888766 78888899999998886653
Q ss_pred ccccCCCCCCEEEecCCCCCCc
Q 037308 217 SSLFKLKSLGVLNLGGCSNLQR 238 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~~~~ 238 (321)
..+..+++|+.|++++|.+...
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEECC
T ss_pred hHHccCCCCCEEEccCCcCcCC
Confidence 3478888899999888776553
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=7.4e-17 Score=133.29 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=84.5
Q ss_pred cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308 61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS 140 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n 140 (321)
+.++..++.+..+|..+ .++|++|++++|.++.++.. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNG--------------------------VFDELTSLTQLYLGGN 62 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTT--------------------------TTTTCTTCSEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChh--------------------------hhcccccCcEEECCCC
Confidence 34555556666665443 34666666666666544322 2333444444444444
Q ss_pred CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccc
Q 037308 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPS 217 (321)
Q Consensus 141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~ 217 (321)
.+....+..+..+++|++|++++|...+..+.. .+++|++|++++|.+++++.. +..+++|++|++++|.+.+..+.
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 422222222333444444444443211111100 133444444444444444432 45556666666666665544444
Q ss_pred cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccC
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLF 270 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~ 270 (321)
.+..+++|+.|++++|.+.+ .+++|+.|+++.|.++ .+|..++.++
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 45566666666666654332 3345666666666655 5555554443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.1e-17 Score=133.21 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=77.5
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
++|+.+++++|.+..++....+++|++|++++|.+..+ . .+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-~---------------------------~l~~l~~L~~L~l 95 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-N---------------------------PISGLSNLERLRI 95 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-G---------------------------GGTTCTTCCEEEE
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-h---------------------------hhhcCCCCCEEEe
Confidence 55666666666655555333555666666665544432 1 2334444555555
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccc-ccccChhhhccCCCCeEecccCccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETA-IEELPSSIERLLRLGHLDLSDCKRLKS 214 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~n~~~~~ 214 (321)
++|.+....+..++.+++|++|++++|......+.. .+++|++|++++|. ++.++ .+..+++|++|++++|.+.+
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-
Confidence 544433333444444455555555544333222211 24455555555554 55555 46667777777777777554
Q ss_pred ccccccCCCCCCEEEecCCCCC
Q 037308 215 LPSSLFKLKSLGVLNLGGCSNL 236 (321)
Q Consensus 215 ~~~~~~~l~~L~~L~l~~~~~~ 236 (321)
++ .+..+++|+.|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 32 4667777777777776543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-16 Score=137.37 Aligned_cols=171 Identities=21% Similarity=0.219 Sum_probs=86.8
Q ss_pred cCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcE
Q 037308 79 AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTK 158 (321)
Q Consensus 79 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 158 (321)
+.+++.++++++.++.++ .+..+++++. +++++|.++ .++ .+..+++|++|++++|.+ ..+++ +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~-L~l~~n~i~-~l~---~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQN-FNGDNSNIQ-SLA---GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSE-EECTTSCCC-CCT---TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCE
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcE-EECcCCCcc-cch---HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCE
Confidence 444555555555555543 3344555555 555555555 443 345555666666665552 23333 555555666
Q ss_pred EecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCc
Q 037308 159 LDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238 (321)
Q Consensus 159 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 238 (321)
|++++|.. +.++....++|++|++++|.+++++ .+..+++|++|++++|.+.+. + .++.+++|+.|++++|.+.+.
T Consensus 90 L~L~~N~l-~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRL-KNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCC-SCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCcc-CCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 66655432 2222221245555555555555544 245555555555555554432 2 345555555555555544443
Q ss_pred cccccCCCCCCcEEEcccCCCcccc
Q 037308 239 LPECLGQLSSPIILNLAKTNVERIP 263 (321)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~l~ 263 (321)
..+..+++|+.|++++|.++..|
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --HHhccCCCCCEEeCCCCcccCCc
Confidence 34455555555555555554333
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=4.3e-16 Score=129.96 Aligned_cols=147 Identities=19% Similarity=0.149 Sum_probs=97.1
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCccEEEecc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRE 185 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 185 (321)
++++.+.++ .+|. .+ ...+++|++++|.+.+..+ ..|..+++|+.|++++|...+..+.. .+++|++|++++
T Consensus 16 l~~s~n~l~-~iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 16 VDCSNQKLN-KIPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EECCSSCCS-SCCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeCCCCcc-cCcc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 677777777 6664 33 3456788888887554433 34677778888888776533322211 456677777777
Q ss_pred ccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 186 TAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 186 ~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777766543 666777777777777766666666677777777777777666666666777777777777777765
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.1e-16 Score=129.50 Aligned_cols=167 Identities=18% Similarity=0.123 Sum_probs=124.1
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE 185 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~ 185 (321)
++.+.+.++ .+|. .+ .++|++|++++|.+.+..+..++.+++|++|++++|... .++.. .+++|++|++++
T Consensus 12 v~c~~~~l~-~~p~--~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 12 VECYSQGRT-SVPT--GI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EECCSSCCS-SCCS--CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCcc-CCCC--CC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 445555565 5553 33 468999999999866554556788999999999987544 44332 467888999998
Q ss_pred ccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch
Q 037308 186 TAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE 264 (321)
Q Consensus 186 ~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 264 (321)
|.+++++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 888887754 678888999999888877766666788888999999888777666556788888999998888655
Q ss_pred hhhccCCcCEEeccCCCCccccc
Q 037308 265 SIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 265 ~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
+.++.|++|+++.|..-..+|
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBB
T ss_pred --cCCCCHHHHHHHHHhCCceee
Confidence 345677778888875555654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=7.5e-16 Score=128.49 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=104.5
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET 186 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 186 (321)
++++.+.++ .+|. .+. ++++.|++++|.+....+..|..+++|+.|++++|......+.. .+++|++|++++|
T Consensus 16 v~c~~~~l~-~iP~--~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 16 VDCRGKGLT-EIPT--NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EECTTSCCS-SCCS--SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEcCCCCcC-cCCC--ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 666777777 7765 443 68888999888865554556788888888888887644433332 4667777777777
Q ss_pred cccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 187 AIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 187 ~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
.++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777654 566777777777777777666667777777777777777776666666777777777777777765
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=4.8e-16 Score=139.44 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=94.1
Q ss_pred EEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCC-CCCCccEEEccCCCCCcccCccccCcccCcEEecC
Q 037308 84 FLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMP-HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS 162 (321)
Q Consensus 84 ~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 162 (321)
.+++++++++.++..+. +.++. |+++.|.++ .++. ..+. .+++|++|++++|.+....+..|..++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~-L~Ls~N~l~-~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-------- 88 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTAL-LDLSHNNLS-RLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-------- 88 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSE-EECCSSCCC-EECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred EEEeCCCCcCccCccCC--CCCCE-EECCCCCCC-ccCh-hhhhhcccccCEEECCCCcCCccChhhccCCC--------
Confidence 45555555555444321 12333 455555554 2221 0233 445555555555543333233344444
Q ss_pred CCCCcccccccccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccc
Q 037308 163 GCSKLKRLLEISSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE 241 (321)
Q Consensus 163 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 241 (321)
+|++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus 89 --------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 89 --------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp --------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred --------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 45555555555555543 356667777777777776666666677777777777777665553333
Q ss_pred cc---CCCCCCcEEEcccCCCcccc-hhhhccCC--cCEEeccCCCC
Q 037308 242 CL---GQLSSPIILNLAKTNVERIP-ESIIQLFV--LRYLLLSYSER 282 (321)
Q Consensus 242 ~~---~~~~~L~~L~l~~n~l~~l~-~~l~~l~~--L~~L~l~~n~~ 282 (321)
.+ ..+++|+.|++++|+++.+| ..+..++. ++.|++.+|+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 33 45677777777777777666 34556665 36677777643
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.6e-17 Score=140.32 Aligned_cols=165 Identities=20% Similarity=0.235 Sum_probs=78.5
Q ss_pred CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308 58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l 137 (321)
.++..+++.++.+..++....+++|++|++++|.++.++ ++..+++|+. +++++|.++ .++ .+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~-L~L~~N~i~-~~~---~l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKE-LHLSHNQIS-DLS---PLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCE-EECCSSCCC-CCG---GGTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCE-EECCCCccC-CCh---hhccCCCCCEEEC
Confidence 334444455555444442224555555555555555443 3444555555 555555554 333 1445555555555
Q ss_pred cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
++|.+ ..+|. +.. ++|+.|++++|...+ ++.. .+++|+.|++++|.+++++ .+..+++|++|++++|.+.+.
T Consensus 93 ~~N~l-~~l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 93 NRNRL-KNLNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSSCC-SCCTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCCcc-CCcCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence 55542 22333 222 555555555543222 2221 3445555555555555554 344555555555555554433
Q ss_pred ccccCCCCCCEEEecCCCC
Q 037308 217 SSLFKLKSLGVLNLGGCSN 235 (321)
Q Consensus 217 ~~~~~l~~L~~L~l~~~~~ 235 (321)
..+..+++|+.|++++|.+
T Consensus 166 ~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCcc
Confidence 3344555555555555443
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=7.7e-18 Score=160.59 Aligned_cols=224 Identities=16% Similarity=0.054 Sum_probs=142.8
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCccccc--ccCCCCCCChHhHHhhccccccc-cCCCCCCCCCCCCcc
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQL--WNGEKHYSNLNQIINATCNKLIA-KTPNPTLMPHLNKLV 133 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~-~~~~~~~~~~l~~L~ 133 (321)
++|+.+++.++....++..+ .+++|++|++++|.++.. ...+..+++|+. ++++ +.+.. .++. ....+++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~-L~L~-~~~~~~~l~~--~~~~~~~L~ 345 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV-LETR-NVIGDRGLEV--LAQYCKQLK 345 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE-EEEE-GGGHHHHHHH--HHHHCTTCC
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE-Eecc-CccCHHHHHH--HHHhCCCCC
Confidence 66666666665545555544 577888888888775432 122356677777 7776 33331 1221 234567788
Q ss_pred EEEccC----------CCCCc-c-cCccccCcccCcEEecCCCCCccccccc---ccCCccEEEec----cccccccC--
Q 037308 134 ILNLRG----------SKSLK-S-LPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLR----ETAIEELP-- 192 (321)
Q Consensus 134 ~L~l~~----------n~~~~-~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~----~~~i~~l~-- 192 (321)
+|++++ +...+ . ++.....+++|+.|+++.+......+.. .+++|+.|+++ .+.+++.|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 888883 32222 1 2222345788888888554433222211 26788888885 56666543
Q ss_pred ----hhhhccCCCCeEecccCc--ccccccccc-cCCCCCCEEEecCCCCCC-ccccccCCCCCCcEEEcccCCCc--cc
Q 037308 193 ----SSIERLLRLGHLDLSDCK--RLKSLPSSL-FKLKSLGVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVE--RI 262 (321)
Q Consensus 193 ----~~~~~l~~L~~L~l~~n~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~--~l 262 (321)
..+..+++|++|+++.|. +.+.....+ ..+++|+.|++++|.+.+ .++..+.++++|+.|++++|.++ .+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 235678889999987543 444333333 358889999999888765 34455678899999999999987 34
Q ss_pred chhhhccCCcCEEeccCCCCcccc
Q 037308 263 PESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 263 ~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
+.....+++|++|++++|+ ++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHHHhcCccCeeECcCCc-CCHH
Confidence 5556778999999999994 6554
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.9e-16 Score=129.10 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=88.8
Q ss_pred cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc-ChhhhccCCCCeEecccC
Q 037308 133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDC 209 (321)
Q Consensus 133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n 209 (321)
+.++.+++. +..+|..+. ++++.|++++|......+.. .+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 455666655 445554332 56667777665433222211 355666777777766665 345666667777777776
Q ss_pred cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCC
Q 037308 210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSE 281 (321)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 281 (321)
.+....+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6655444455666677777777766666666666666777777777777665553 45666667777777664
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.3e-18 Score=161.74 Aligned_cols=268 Identities=15% Similarity=0.010 Sum_probs=142.7
Q ss_pred CCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-----C-CcCceeEEeccCCcccccccCC
Q 037308 27 KMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-----L-SAEKLVFLKVPYSDIEQLWNGE 99 (321)
Q Consensus 27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-----~-~l~~L~~L~l~~~~l~~~~~~~ 99 (321)
.+++|++|++++|.+++....+ ....... ++|+.|+++++.+..+... + .+++|++|++++|.+..++..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKW--LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHH--HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred hCCCCCEEECccccccCcchhH--HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 5677777777776543332110 1111122 7788888877776533321 2 5788888888888777766666
Q ss_pred CCCCChHhHHhhcccccc---ccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccc-c--c
Q 037308 100 KHYSNLNQIINATCNKLI---AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL-E--I 173 (321)
Q Consensus 100 ~~l~~L~~~l~l~~~~l~---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~--~ 173 (321)
..+++|++ ++++..... +.... .+..+++|+.|+++++. ...+|..+..+++|++|++++|....... . .
T Consensus 240 ~~~~~L~~-L~l~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 240 KAAANLEE-FCGGSLNEDIGMPEKYM--NLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHCTTCCE-EEECBCCCCTTCTTSSS--CCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred hhhhHHHh-hcccccccccchHHHHH--HhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 66667766 666432111 01111 34555666666666543 34455555556666666666655211111 0 1
Q ss_pred cc------------------------CCccEEEec-----------cccccc--cChhhhccCCCCeEecccCccccccc
Q 037308 174 SS------------------------GNINWLFLR-----------ETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLP 216 (321)
Q Consensus 174 ~~------------------------~~L~~L~l~-----------~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (321)
.+ ++|++|+++ .+.++. ++.....+++|++|+++.+.+.+..+
T Consensus 316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 23 445555555 233332 22223345566666665555544443
Q ss_pred ccccC-CCCCCEEEecC---CCCCCc------cccccCCCCCCcEEEcccCC--Cc-ccchhh-hccCCcCEEeccCCCC
Q 037308 217 SSLFK-LKSLGVLNLGG---CSNLQR------LPECLGQLSSPIILNLAKTN--VE-RIPESI-IQLFVLRYLLLSYSER 282 (321)
Q Consensus 217 ~~~~~-l~~L~~L~l~~---~~~~~~------~~~~~~~~~~L~~L~l~~n~--l~-~l~~~l-~~l~~L~~L~l~~n~~ 282 (321)
..++. +++|+.|++++ |+..+. ++..+.++++|+.|+++.|. ++ ..+..+ ..+++|++|++++| .
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~ 474 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-G 474 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-C
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-C
Confidence 33433 66677777652 222222 22234556777777776433 44 222333 34778888888887 4
Q ss_pred cccc--c----CccccccccccccC
Q 037308 283 IQSV--S----LPLARGILEDTQRS 301 (321)
Q Consensus 283 l~~~--~----~~~~l~~l~~~~~~ 301 (321)
+++. + ..++++.|++.+|.
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCHHHHHHHHhcCcccCeeeccCCC
Confidence 5432 2 23578888888876
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=129.88 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=99.3
Q ss_pred cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308 61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS 140 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n 140 (321)
+.++++++.++.+|..+ .+.+++|++++|.++.+... ..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~-------------------------~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEAT-------------------------GIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCC-------------------------CCGGGCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCch-------------------------hhhccCCCCCEEECCCC
Confidence 47788888887777654 34567777777777665221 12344445555555555
Q ss_pred CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc-ChhhhccCCCCeEecccCcccccccc
Q 037308 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPS 217 (321)
Q Consensus 141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~ 217 (321)
.+.+..+..|..+++|+.|++++|...+..+.. .+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..|.
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 433333334445555555555554332222211 245566666666777776 45688899999999999999888888
Q ss_pred cccCCCCCCEEEecCCCCCCcc
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRL 239 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~ 239 (321)
.+..+++|+.|++++|++.+..
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSG
T ss_pred HhcCCCCCCEEEecCcCCcCCC
Confidence 9999999999999999877654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.5e-15 Score=127.46 Aligned_cols=84 Identities=24% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEc
Q 037308 176 GNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNL 254 (321)
Q Consensus 176 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 254 (321)
++|++|++++|.++.++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 3444444444445554432 455666666666666644 45555666667777777766665544455666777777777
Q ss_pred ccCCCc
Q 037308 255 AKTNVE 260 (321)
Q Consensus 255 ~~n~l~ 260 (321)
++|.++
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 777766
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.9e-15 Score=126.78 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=91.0
Q ss_pred cCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 4455555555566667664 3688999999999999988777777899999999999998776 7788899999999999
Q ss_pred cccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308 254 LAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 254 l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~ 285 (321)
+++|+++.++. .+..+++|++|++.+|+.-..
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99999998884 578899999999999964433
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2e-18 Score=163.47 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=131.0
Q ss_pred CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308 78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT 157 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 157 (321)
..++|+.|++++|+++.+|..++.+++|+. ++++++......+. .+. .+...+..|..++.+++|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~-L~l~~n~~l~~l~~--------ll~-----~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQE-LEPENKWCLLTIIL--------LMR-----ALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH--------HHH-----HHCTGGGHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHH-hccccchhhhhHHH--------HHH-----hcccccCCHHHHHHHHhcc
Confidence 456666777777777666666666666666 66644431101110 000 0012334455566667777
Q ss_pred EEe-cCCCCCcccc----------cccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308 158 KLD-LSGCSKLKRL----------LEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226 (321)
Q Consensus 158 ~L~-l~~~~~~~~~----------~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 226 (321)
.|+ ++.+ ....+ .......|+.|++++|.++++|. +..+++|+.|++++|.+. .+|..++.+++|+
T Consensus 413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 666 3332 11111 11123468899999999999886 888999999999998876 6788889999999
Q ss_pred EEEecCCCCCCccccccCCCCCCcEEEcccCCCccc--chhhhccCCcCEEeccCCCCccccc
Q 037308 227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI--PESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
.|++++|.+.+ +| .++.+++|+.|++++|.++.+ |..+..+++|+.|++++| .++.+|
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence 99999987766 66 788999999999999999977 788889999999999999 666654
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=6.3e-16 Score=138.64 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=110.9
Q ss_pred cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCC--CCCChHhHHhhccccccccCCCCCCCCCCCCccEEEcc
Q 037308 61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEK--HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLR 138 (321)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~--~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 138 (321)
+.++++++.+..+|..+ .+.++.|++++|+++.++.... .+++|+. |+++.|.++ .++. ..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~-L~L~~N~i~-~i~~-~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHS-LLLSHNHLN-FISS-EAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCE-EECCSSCCC-EECT-TTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCE-EECCCCcCC-ccCh-hhccCCCCCCEEECC
Confidence 56777777777777653 3457778888888877765433 6777777 888888877 4441 157778888888888
Q ss_pred CCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhh----hccCCCCeEecccCccc
Q 037308 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSI----ERLLRLGHLDLSDCKRL 212 (321)
Q Consensus 139 ~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~----~~l~~L~~L~l~~n~~~ 212 (321)
+|.+....+..|..+++|+.|++++|......+.. .+++|+.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88755444455777778888888776543322221 3566667777777777666543 45666777777776655
Q ss_pred ccccccccCCCC--CCEEEecCCCCCC
Q 037308 213 KSLPSSLFKLKS--LGVLNLGGCSNLQ 237 (321)
Q Consensus 213 ~~~~~~~~~l~~--L~~L~l~~~~~~~ 237 (321)
...+..+..++. ++.|++.+|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 544445555554 3666666665543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3.1e-18 Score=162.13 Aligned_cols=197 Identities=17% Similarity=0.051 Sum_probs=133.1
Q ss_pred CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcc--------------cccccCCCCCCChHhHHh-hccccccccCC
Q 037308 58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDI--------------EQLWNGEKHYSNLNQIIN-ATCNKLIAKTP 121 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l--------------~~~~~~~~~l~~L~~~l~-l~~~~l~~~~~ 121 (321)
++|+.|++++|.++.+|..+ .+++|+.|++++|.. ...+..+..+++|+. ++ ++.|.+.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~-L~~l~~n~~~---- 423 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRAAYLD---- 423 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH-HCGGGHHHHH----
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc-Ccchhhcccc----
Confidence 88999999999998898877 799999999977641 111122233344444 43 2333221
Q ss_pred CCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCC
Q 037308 122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLR 200 (321)
Q Consensus 122 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~ 200 (321)
.|+.+.+++|. +..+|. ..|+.|++++|.. +.+|.. .+++|+.|++++|.++.+|..++.+++
T Consensus 424 ---------~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 487 (567)
T 1dce_A 424 ---------DLRSKFLLENS-VLKMEY-----ADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487 (567)
T ss_dssp ---------HHHHHHHHHHH-HHHHHH-----TTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred ---------hhhhhhhhccc-ccccCc-----cCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCC
Confidence 11111122221 111111 1355555555432 223322 355666677777778888888999999
Q ss_pred CCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcEEEcccCCCcccchh----hhccCCcCEE
Q 037308 201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPIILNLAKTNVERIPES----IIQLFVLRYL 275 (321)
Q Consensus 201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~----l~~l~~L~~L 275 (321)
|++|++++|.+.+ +| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|.++.+|+. +..+++|+.|
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9999999999776 56 7899999999999999888776 89999999999999999999976643 3458899888
Q ss_pred ec
Q 037308 276 LL 277 (321)
Q Consensus 276 ~l 277 (321)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=4.7e-15 Score=118.17 Aligned_cols=133 Identities=24% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCccEEEccCCCCC-cccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecc
Q 037308 129 LNKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLS 207 (321)
Q Consensus 129 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 207 (321)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.. +++ ..+..+++|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l----------------------~~~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL----------------------ISV-SNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC----------------------CCC-SSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC----------------------CCh-hhhccCCCCCEEECc
Confidence 467888888888754 46777667777777777777542 222 224444555555555
Q ss_pred cCcccccccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEeccCCCC
Q 037308 208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n~~ 282 (321)
+|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|++|++++| .
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~ 158 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-E 158 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-T
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-C
Confidence 5555544444444555555555555544332 11455566666666666666665554 4556666666666666 4
Q ss_pred ccc
Q 037308 283 IQS 285 (321)
Q Consensus 283 l~~ 285 (321)
+.+
T Consensus 159 ~~~ 161 (168)
T 2ell_A 159 DQE 161 (168)
T ss_dssp SCB
T ss_pred hhh
Confidence 444
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.8e-15 Score=118.09 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=107.9
Q ss_pred ccCCccEEEecccccc--ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308 174 SSGNINWLFLRETAIE--ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII 251 (321)
Q Consensus 174 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 251 (321)
.+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3567888888888888 7887788999999999999997765 67889999999999999988878888888999999
Q ss_pred EEcccCCCcccc--hhhhccCCcCEEeccCCCCcccccC--------ccccccccccccCcc
Q 037308 252 LNLAKTNVERIP--ESIIQLFVLRYLLLSYSERIQSVSL--------PLARGILEDTQRSPH 303 (321)
Q Consensus 252 L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~l~~~~~--------~~~l~~l~~~~~~~~ 303 (321)
|++++|.++.++ ..+..+++|++|++++| .+..++. .++++.|++..+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999999876 67889999999999999 7766652 357777777776543
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=118.32 Aligned_cols=126 Identities=21% Similarity=0.184 Sum_probs=92.9
Q ss_pred cEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308 157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236 (321)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 236 (321)
+.++++++. ++.+|...+++|++|++++|.++.+|..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345555532 4444444456777777777777777777778888888888888877766677788888888888888777
Q ss_pred CccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308 237 QRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l 283 (321)
+..+..|..+++|+.|++++|.++.+|. .+..+++|++|++++|+.-
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7776778888888888888888887775 4677888888888888443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=5.1e-15 Score=115.49 Aligned_cols=127 Identities=24% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCCccEEEccCCCCC-cccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecc
Q 037308 129 LNKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLS 207 (321)
Q Consensus 129 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 207 (321)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|. ++++ ..+..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence 467888888888755 4667666667777777776653 3333 335566677777777
Q ss_pred cCcccccccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEecc
Q 037308 208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLS 278 (321)
Q Consensus 208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~ 278 (321)
+|.+.+.+|..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7776665666666677777777777766552 33667778888888888888876664 56778888888775
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=9.2e-17 Score=153.15 Aligned_cols=82 Identities=17% Similarity=0.005 Sum_probs=53.5
Q ss_pred ccCCCCCCEEEecCCCCCCccccccCC-CCCCcEEEcccCCCcc-cchhh-hccCCcCEEeccCCCCccccc------Cc
Q 037308 219 LFKLKSLGVLNLGGCSNLQRLPECLGQ-LSSPIILNLAKTNVER-IPESI-IQLFVLRYLLLSYSERIQSVS------LP 289 (321)
Q Consensus 219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~-l~~~l-~~l~~L~~L~l~~n~~l~~~~------~~ 289 (321)
+..+++|+.|++++ .+.......+.. +++|+.|++++|.++. ....+ ..+++|++|++++|+. ++.. -.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC
Confidence 34556666666654 333333333333 7788899998888872 22333 6789999999999954 4332 23
Q ss_pred cccccccccccCc
Q 037308 290 LARGILEDTQRSP 302 (321)
Q Consensus 290 ~~l~~l~~~~~~~ 302 (321)
++++.|++.+|..
T Consensus 506 ~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 506 ETMRSLWMSSCSV 518 (594)
T ss_dssp GGSSEEEEESSCC
T ss_pred CCCCEEeeeCCCC
Confidence 6889999988866
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.9e-14 Score=117.35 Aligned_cols=125 Identities=22% Similarity=0.204 Sum_probs=92.4
Q ss_pred cEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccc---cccCCccEEEecccccccc-ChhhhccCCCCeEeccc
Q 037308 133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLE---ISSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSD 208 (321)
Q Consensus 133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~ 208 (321)
+.++++++. ++.+|..+. .+++.|++++|...+..+. ..+++|++|++++|.++++ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888877 466776443 3788888888654333322 1467788888888888876 45677788888888888
Q ss_pred CcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308 209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877777777778888888888888777777777778888888888888877
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=3.6e-16 Score=152.32 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=70.0
Q ss_pred CCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCccc
Q 037308 68 YPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSL 146 (321)
Q Consensus 68 ~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 146 (321)
+.+...+..+ .++.|+.|+|++|.+..++..++.+++|+. |+++.|.++ .+|. .+..+++|++|+|++|.+. .+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~-L~Ls~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR-LYLNGNSLT-ELPA--EIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC-CBCTTSCCS-CCCG--GGGGGTTCCEEECTTSCCS-SC
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE-EEeeCCcCc-ccCh--hhhCCCCCCEEeCcCCcCC-cc
Confidence 3333333333 677788888888887777766677777777 777777777 6665 6777777777777777744 66
Q ss_pred CccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc
Q 037308 147 PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE 190 (321)
Q Consensus 147 p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~ 190 (321)
|..+..+++|++|++++|. ++.+|.. .+++|+.|++++|.+++
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence 7667667777777666653 2333332 23444444444444443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=3.8e-15 Score=145.14 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=89.5
Q ss_pred HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308 109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET 186 (321)
Q Consensus 109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 186 (321)
+++.+|.+. ..+. .+..+..|+.|+|++|.+ ..+|..+..+++|+.|+|++|... .+|.. .+++|++|++++|
T Consensus 206 ~~~~~n~~~-~~~~--~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 206 DDDIENRMV-MPKD--SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred cccccccee-cChh--hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 444455555 4444 778888999999999884 467766667888888888886543 45442 4666777777777
Q ss_pred cccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCC-CcEEEcccCCCc-ccch
Q 037308 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSS-PIILNLAKTNVE-RIPE 264 (321)
Q Consensus 187 ~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~-~l~~ 264 (321)
.++.+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+.. ...+++++|.++ .+|.
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77777766777777777777776644 55656777777777777777766666655433211 123566666665 4443
Q ss_pred hhhccCCcCEEeccCC
Q 037308 265 SIIQLFVLRYLLLSYS 280 (321)
Q Consensus 265 ~l~~l~~L~~L~l~~n 280 (321)
.|+.|+++.|
T Consensus 360 ------~l~~l~l~~n 369 (727)
T 4b8c_D 360 ------ERRFIEINTD 369 (727)
T ss_dssp ------C---------
T ss_pred ------ccceeEeecc
Confidence 3444555554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=6.2e-14 Score=114.24 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=80.4
Q ss_pred cEEecCCCCCcccccccccCCccEEEeccccccccChh--hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308 157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS--IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 234 (321)
+.++++++. ++.+|...+.++++|++++|.+++++.. +..+++|++|++++|.+.+..|..+.++++|+.|++++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 566666643 3455554455677777777777666542 5666677777777776666666666667777777777766
Q ss_pred CCCccccccCCCCCCcEEEcccCCCccc-chhhhccCCcCEEeccCCCC
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVERI-PESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~ 282 (321)
+.+..+..+.++++|+.|++++|+++.+ |..+..+++|++|++++|+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 6666555666667777777777776643 45566666777777777643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2.6e-14 Score=111.48 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=97.3
Q ss_pred cCCccEEEecccccc--ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEE
Q 037308 175 SGNINWLFLRETAIE--ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIIL 252 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 252 (321)
+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 567888888888888 6887788899999999999997765 668899999999999999888788888889999999
Q ss_pred EcccCCCcccc--hhhhccCCcCEEeccCCCCccccc
Q 037308 253 NLAKTNVERIP--ESIIQLFVLRYLLLSYSERIQSVS 287 (321)
Q Consensus 253 ~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~l~~~~ 287 (321)
++++|.++.++ ..+..+++|++|++++| .++.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGST
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchH
Confidence 99999999765 77899999999999999 777765
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=6.8e-14 Score=123.72 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=69.8
Q ss_pred CCCceEEEEeecCCCCccccceeccCCCC--cCcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCC---
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQDPR--FAEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKH--- 101 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~--~~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~--- 101 (321)
++++++|.+.++- . ......++ .++|+.|++++|.+..+.... ..+.++.+.+..+.+.. ..+..
T Consensus 24 ~~~l~~L~l~g~i-~------~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N------AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEE-C------HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEET
T ss_pred hCceeEEEEeccc-c------HHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccc
Confidence 4578899998752 1 11111222 277999999988877221111 22224444444444332 33445
Q ss_pred -----CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308 102 -----YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (321)
Q Consensus 102 -----l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 163 (321)
+++|++ +++.. .++ .++. ..|.++++|+.+++++|.+....+..|..+.++..+....
T Consensus 95 ~~~~g~~~L~~-l~L~~-~i~-~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 95 GVTKGKQTLEK-VILSE-KIK-NIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TEEEECTTCCC--CBCT-TCC-EECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccccCCCcE-EECCc-ccc-chhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 677777 77766 666 5542 3678888888888888765444444566666666555443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.8e-14 Score=113.21 Aligned_cols=129 Identities=21% Similarity=0.133 Sum_probs=81.5
Q ss_pred CCCCCCccEEEccCCCCCcccCccccCcc-cCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeE
Q 037308 126 MPHLNKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHL 204 (321)
Q Consensus 126 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 204 (321)
+..+.+|+.|++++|.+. .+|. +..+. +|++|++++ |.++++ ..+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~----------------------N~l~~~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSD----------------------NEIRKL-DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCS----------------------SCCCEE-CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCC----------------------CCCCcc-cccccCCCCCEE
Confidence 445666777777776633 3343 33332 555555555 444444 235566677777
Q ss_pred ecccCcccccccccccCCCCCCEEEecCCCCCCcccc--ccCCCCCCcEEEcccCCCcccchh----hhccCCcCEEecc
Q 037308 205 DLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE--CLGQLSSPIILNLAKTNVERIPES----IIQLFVLRYLLLS 278 (321)
Q Consensus 205 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l~~~----l~~l~~L~~L~l~ 278 (321)
++++|.+.+..+..+..+++|+.|++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|+++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 7777776554434446777777777777665 33444 666777788888888887777654 6777888888887
Q ss_pred CC
Q 037308 279 YS 280 (321)
Q Consensus 279 ~n 280 (321)
+|
T Consensus 149 ~n 150 (176)
T 1a9n_A 149 KV 150 (176)
T ss_dssp EC
T ss_pred cC
Confidence 77
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.2e-13 Score=109.35 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=79.7
Q ss_pred cEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC
Q 037308 157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN 235 (321)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 235 (321)
+.++++++. ++.+|...+++|+.|++++|.+++++.. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 344444422 2333333345566666666666665543 56667777777777776655555567777777777777776
Q ss_pred CCccccccCCCCCCcEEEcccCCCcccchh-hhccCCcCEEeccCCCCc
Q 037308 236 LQRLPECLGQLSSPIILNLAKTNVERIPES-IIQLFVLRYLLLSYSERI 283 (321)
Q Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~l 283 (321)
.+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 665555567777777777777777766653 466777777777777433
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=2.5e-16 Score=150.10 Aligned_cols=200 Identities=14% Similarity=0.039 Sum_probs=122.8
Q ss_pred CcCceeEEeccCCccccc--ccCCCCCCChHhHHhhcccccccc-CCCCCCCCCCCCccEEEccCC---------CCCcc
Q 037308 78 SAEKLVFLKVPYSDIEQL--WNGEKHYSNLNQIINATCNKLIAK-TPNPTLMPHLNKLVILNLRGS---------KSLKS 145 (321)
Q Consensus 78 ~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~-~~~~~~~~~l~~L~~L~l~~n---------~~~~~ 145 (321)
.+++|++|++++|.++.. ......+++|+. ++++.+ +... ++. ....+++|++|+++++ .+...
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~-L~l~~~-~~~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR-LWVLDY-IEDAGLEV--LASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE-EEEEGG-GHHHHHHH--HHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE-EeCcCc-cCHHHHHH--HHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 467888888888876531 122346677777 777655 3311 111 2234778888888432 22111
Q ss_pred c-CccccCcccCcEEecCCCCCccccccc---ccCCccEEEec--c----ccccccC------hhhhccCCCCeEecccC
Q 037308 146 L-PSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLR--E----TAIEELP------SSIERLLRLGHLDLSDC 209 (321)
Q Consensus 146 ~-p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~--~----~~i~~l~------~~~~~l~~L~~L~l~~n 209 (321)
. ......+++|+.|.++.+......... .+++|+.|+++ + +.++..| ..+..+++|++|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 1 111124778888866654432222111 36788888888 3 4555333 2256678888888876
Q ss_pred cccccccccccC-CCCCCEEEecCCCCCCcccccc-CCCCCCcEEEcccCCCcc--cchhhhccCCcCEEeccCCCC
Q 037308 210 KRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPECL-GQLSSPIILNLAKTNVER--IPESIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 210 ~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~~ 282 (321)
.+.+.....++. +++|+.|++++|.+.+.....+ ..+++|+.|++++|.++. +...+..+++|++|++++|+.
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555544444444 7889999998887655444443 567889999999888862 223445688899999988854
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.9e-13 Score=109.74 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=99.3
Q ss_pred cCCccEEEeccccccccChhhhcc-CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELPSSIERL-LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+.+|+.|++++|.++.++. +..+ ++|++|++++|.+.+. ..++.+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 5677777887888887765 4444 4999999999998765 5688999999999999987755445558899999999
Q ss_pred cccCCCcccch--hhhccCCcCEEeccCCCCccccc--------CccccccccccccCc
Q 037308 254 LAKTNVERIPE--SIIQLFVLRYLLLSYSERIQSVS--------LPLARGILEDTQRSP 302 (321)
Q Consensus 254 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~~l~~~~--------~~~~l~~l~~~~~~~ 302 (321)
+++|.++.+|. .+..+++|++|++++| .+..+| ..+.++.|+...+..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999887 7889999999999999 666665 124667777666543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=106.43 Aligned_cols=86 Identities=22% Similarity=0.165 Sum_probs=65.6
Q ss_pred cCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+++|+.|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 334444555555566655 3477888888999998888877777788889999999998887766656788889999999
Q ss_pred cccCCCc
Q 037308 254 LAKTNVE 260 (321)
Q Consensus 254 l~~n~l~ 260 (321)
+++|.+.
T Consensus 133 L~~N~~~ 139 (193)
T 2wfh_A 133 IGANPLY 139 (193)
T ss_dssp CCSSCEE
T ss_pred eCCCCee
Confidence 9999886
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=5.4e-12 Score=101.18 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=66.2
Q ss_pred cCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34555555555666666643 57788899999999888776666778889999999999887765555678889999999
Q ss_pred cccCCCcc
Q 037308 254 LAKTNVER 261 (321)
Q Consensus 254 l~~n~l~~ 261 (321)
+++|.++.
T Consensus 131 l~~N~~~~ 138 (177)
T 2o6r_A 131 LHTNPWDC 138 (177)
T ss_dssp CCSSCBCC
T ss_pred ecCCCeec
Confidence 99998873
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.1e-12 Score=103.43 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=60.7
Q ss_pred cEEecCCCCCcccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC
Q 037308 157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN 235 (321)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 235 (321)
+.++++++. ++.+|...+.+|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 456666643 34455443556666666666666653 3455666666666666665554444455666666666666655
Q ss_pred CCccccccCCCCCCcEEEcccCCCccc
Q 037308 236 LQRLPECLGQLSSPIILNLAKTNVERI 262 (321)
Q Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l 262 (321)
.+..+..+..+++|+.|++++|.+...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 544434456666666666666666533
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.2e-12 Score=102.87 Aligned_cols=105 Identities=23% Similarity=0.179 Sum_probs=66.0
Q ss_pred cCcEEecCCCCCcccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308 155 FLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC 233 (321)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 233 (321)
+.+.++++++. ++.+|...+.+|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34566776643 44455444566777777777776653 34666667777777776666555555666677777777766
Q ss_pred CCCCccccccCCCCCCcEEEcccCCCc
Q 037308 234 SNLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
.+.+..+..+..+++|+.|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 665555455666667777777777665
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=1.5e-14 Score=118.43 Aligned_cols=125 Identities=21% Similarity=0.099 Sum_probs=82.4
Q ss_pred cccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308 149 GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV 227 (321)
Q Consensus 149 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 227 (321)
.+..+++|+.|++++|.. +.++.. .+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCC-ccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 566677777777776543 334422 4567777777777777777666666778888888777655 33 4667777778
Q ss_pred EEecCCCCCCccc-cccCCCCCCcEEEcccCCCcccc-h----------hhhccCCcCEEe
Q 037308 228 LNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIP-E----------SIIQLFVLRYLL 276 (321)
Q Consensus 228 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~-~----------~l~~l~~L~~L~ 276 (321)
|++++|.+.+..+ ..+..+++|+.|++++|.++..+ . .+..+++|++|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8877776554221 35677777888888877776332 1 256677777775
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=6.8e-11 Score=107.18 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=148.9
Q ss_pred cCcccEEEecCCCCCCCCCc-CCcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 57 FAEVKYFHWHGYPLKSLPSN-LSAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 57 ~~~L~~l~l~~~~l~~~~~~-~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
..+|+.+.+..+ +..++.. +.-.+|+.+.+.+ .++.+. ..+..+++|+. +++..|.++ .++. ..|. +.+|+.
T Consensus 134 ~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~-l~l~~n~l~-~I~~-~aF~-~~~L~~ 207 (401)
T 4fdw_A 134 NSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKK-ADLSKTKIT-KLPA-STFV-YAGIEE 207 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCE-EECTTSCCS-EECT-TTTT-TCCCSE
T ss_pred cCCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCe-eecCCCcce-Eech-hhEe-ecccCE
Confidence 356777777654 5555443 3334688888865 555554 35566777877 888777777 6664 1343 578888
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcc
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKR 211 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~ 211 (321)
+.+..+ +...-...|.++++|+.+++..+ +..++.. ...+|+.+.+. +.++.++. .+.++++|+.+++.++..
T Consensus 208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccc
Confidence 888754 23333345778888888888763 3333332 23678888884 55777764 578889999999988664
Q ss_pred c-----ccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCCCccc
Q 037308 212 L-----KSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 212 ~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~ 285 (321)
. ...+..|.++++|+.+.+.. .+...-..+|.++++|+.+++..+ ++.+. ..|..+ +|+++++.+| .+..
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~ 359 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQ 359 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCB
T ss_pred cCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcc
Confidence 3 24456788999999999985 444444568889999999999555 77776 467788 9999999998 5555
Q ss_pred cc
Q 037308 286 VS 287 (321)
Q Consensus 286 ~~ 287 (321)
++
T Consensus 360 l~ 361 (401)
T 4fdw_A 360 VF 361 (401)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=5.6e-11 Score=107.74 Aligned_cols=241 Identities=8% Similarity=0.041 Sum_probs=174.0
Q ss_pred ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc
Q 037308 19 RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW 96 (321)
Q Consensus 19 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~ 96 (321)
.+...+|..+ +|+.+.+..+- .......+...+|+.+.+.. .+..++.. + ++++|+.+++++|.++.++
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~i-------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEGL-------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTTC-------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred EehHhhcccC-CccEEEeCCCc-------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec
Confidence 4445677774 79999987652 11222333447799999985 56666654 4 7999999999999999998
Q ss_pred cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--
Q 037308 97 NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI-- 173 (321)
Q Consensus 97 ~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~-- 173 (321)
.+.+...+++. +.+..+ ++ .++. ..|.++.+|+.+++..+ +..++ ..|.+ .+|+.+.+..+ +..++..
T Consensus 197 ~~aF~~~~L~~-l~lp~~-l~-~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF 267 (401)
T 4fdw_A 197 ASTFVYAGIEE-VLLPVT-LK-EIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAF 267 (401)
T ss_dssp TTTTTTCCCSE-EECCTT-CC-EECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTT
T ss_pred hhhEeecccCE-EEeCCc-hh-eehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHh
Confidence 87777788888 888633 55 5442 37899999999999885 34443 34655 78999999652 3333332
Q ss_pred -ccCCccEEEecccccc-----ccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCC
Q 037308 174 -SSGNINWLFLRETAIE-----ELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246 (321)
Q Consensus 174 -~~~~L~~L~l~~~~i~-----~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 246 (321)
.+.+|+.+++.++.+. .++. .+.++++|+.+.+.. .+.......|.++.+|+.+.+.. ++...-..+|.++
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~ 345 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT 345 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC
Confidence 5789999999887765 4664 588999999999984 56666667889999999999976 4444445688899
Q ss_pred CCCcEEEcccCCCcccch-hhhccC-CcCEEeccCC
Q 037308 247 SSPIILNLAKTNVERIPE-SIIQLF-VLRYLLLSYS 280 (321)
Q Consensus 247 ~~L~~L~l~~n~l~~l~~-~l~~l~-~L~~L~l~~n 280 (321)
+|+.+++.+|.+..++. .+..++ .++.|++-.+
T Consensus 346 -~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 346 -GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred -CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 99999999998887663 444453 5556655544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.6e-11 Score=97.81 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=86.7
Q ss_pred CccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308 177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK 256 (321)
Q Consensus 177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 256 (321)
..+.++++++.++++|..+ .+++++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578889999999888655 37889999999988887788888999999999999888776666778899999999999
Q ss_pred CCCcccch-hhhccCCcCEEeccCCCC
Q 037308 257 TNVERIPE-SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 257 n~l~~l~~-~l~~l~~L~~L~l~~n~~ 282 (321)
|+++.++. .+..+++|++|++++|+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99998875 578889999999999843
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=2.2e-11 Score=97.38 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=84.9
Q ss_pred ccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC
Q 037308 178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT 257 (321)
Q Consensus 178 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 257 (321)
-+.++++++.++++|..+. ++|++|++++|.+.+..|..++++++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4678888898888887553 78899999999888877888889999999999998877665556788899999999999
Q ss_pred CCcccchh-hhccCCcCEEeccCCC
Q 037308 258 NVERIPES-IIQLFVLRYLLLSYSE 281 (321)
Q Consensus 258 ~l~~l~~~-l~~l~~L~~L~l~~n~ 281 (321)
+++.+|.. +..+++|++|++++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 99988864 7888999999999983
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.3e-13 Score=112.87 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=92.7
Q ss_pred ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 174 SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 174 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
.+++|++|++++|.++++| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|+
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 4789999999999999998 7899999999999999866 567777788999999999987765 54 688899999999
Q ss_pred cccCCCcccch--hhhccCCcCEEeccCCCC
Q 037308 254 LAKTNVERIPE--SIIQLFVLRYLLLSYSER 282 (321)
Q Consensus 254 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~~ 282 (321)
+++|.++.++. .+..+++|++|++++|+.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 99999998775 788999999999999943
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=4.3e-11 Score=105.67 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=155.9
Q ss_pred CCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-C--------cCceeEEeccCCccccccc
Q 037308 28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-S--------AEKLVFLKVPYSDIEQLWN 97 (321)
Q Consensus 28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~--------l~~L~~L~l~~~~l~~~~~ 97 (321)
+++|++|||++|.+... ... .-..+.++.+.+..+ .+|.. + + +++|+.+++++ .++.+..
T Consensus 48 l~~L~~LdLs~n~i~~~-----~~~-~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-----SGK-AGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCE-----EES-SSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEe-----cCc-ccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence 78999999999985410 000 011122344444443 23333 2 5 78888888877 7777654
Q ss_pred -CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCC----CcccCccccCcccCc---------------
Q 037308 98 -GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKS----LKSLPSGIFNLEFLT--------------- 157 (321)
Q Consensus 98 -~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~p~~l~~l~~L~--------------- 157 (321)
.+..+++|+. +++..|.+. .++. ..|.++.++..+....... .......|..+..|+
T Consensus 118 ~aF~~~~~L~~-l~l~~n~i~-~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 118 AAFKGCDNLKI-CQIRKKTAP-NLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp TTTTTCTTCCE-EEBCCSSCC-EECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred HHhhcCcccce-EEcCCCCcc-ccch-hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence 4566777888 888777776 5442 3667777777666555211 011112233344444
Q ss_pred -----------EEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCC
Q 037308 158 -----------KLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLK 223 (321)
Q Consensus 158 -----------~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 223 (321)
.+.+.+.......... .+++|+.+++.+|.++.++.. |.++.+|+.+++..| +....+..|.++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 3333221110001000 278999999999999999864 889999999999986 6666667899999
Q ss_pred CCC-EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEec
Q 037308 224 SLG-VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLL 277 (321)
Q Consensus 224 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l 277 (321)
+|+ .+++.+ .+...-+.+|.++++|+.+++++|.++.++. .|.++++|++++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999988 5555556799999999999999999998885 7888999999864
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=2.8e-12 Score=115.17 Aligned_cols=157 Identities=18% Similarity=0.096 Sum_probs=104.3
Q ss_pred CCCccEEEccCCCCCcccCccc----c-CcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccC-----hhh
Q 037308 129 LNKLVILNLRGSKSLKSLPSGI----F-NLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELP-----SSI 195 (321)
Q Consensus 129 l~~L~~L~l~~n~~~~~~p~~l----~-~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~-----~~~ 195 (321)
++.|++|++++|.+.......+ . ..++|+.|++++|......... .+.+|+.|++++|.+++.. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567888888887543222222 2 2368888888887643321111 2567888888888887532 222
Q ss_pred -hccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCcc-----
Q 037308 196 -ERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVER----- 261 (321)
Q Consensus 196 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~----- 261 (321)
...++|++|++++|.+.+. ++..+..+++|++|++++|.+... ++..+...++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356788888888887542 334456788888899888876542 34566677788899998888873
Q ss_pred cchhhhccCCcCEEeccCCCCcccc
Q 037308 262 IPESIIQLFVLRYLLLSYSERIQSV 286 (321)
Q Consensus 262 l~~~l~~l~~L~~L~l~~n~~l~~~ 286 (321)
++..+..+++|++|++++| .+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHH
Confidence 4445566788889999888 56543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.2e-10 Score=103.55 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=65.5
Q ss_pred EEecCCCCCccccccc-ccCCccEEEecc-ccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308 158 KLDLSGCSKLKRLLEI-SSGNINWLFLRE-TAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234 (321)
Q Consensus 158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~-~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 234 (321)
.++++++..+..+|.. .+.+|+.|++++ |.++.++ ..+..+++|++|+|++|.+.+..|..|.++++|+.|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3455554234445542 244577777774 7777766 346677777777777777766666667777777777777766
Q ss_pred CCCccccccCCCCCCcEEEcccCCCc
Q 037308 235 NLQRLPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6554444455444 777777777776
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=9e-11 Score=105.34 Aligned_cols=133 Identities=17% Similarity=0.038 Sum_probs=96.2
Q ss_pred CCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc-------ccCCccEEEeccccccc-----cChhh
Q 037308 129 LNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI-------SSGNINWLFLRETAIEE-----LPSSI 195 (321)
Q Consensus 129 l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~-----l~~~~ 195 (321)
..+|++|++++|.+..... .....+++|+.|++++|......... ..++|+.|++++|.++. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3678889999887543322 22334678889999987643321111 24689999999998875 44456
Q ss_pred hccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCcc
Q 037308 196 ERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVER 261 (321)
Q Consensus 196 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 261 (321)
..+++|++|++++|.+.+. ++..+...++|+.|++++|.+... ++..+...++|+.|++++|.++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7788999999999997653 345567788999999999988653 34455567899999999999983
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=5e-09 Score=92.91 Aligned_cols=102 Identities=22% Similarity=0.122 Sum_probs=68.7
Q ss_pred EEEccCC-CCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEeccc
Q 037308 134 ILNLRGS-KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSD 208 (321)
Q Consensus 134 ~L~l~~n-~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~ 208 (321)
.++.+++ . +..+|. +..+++|+.|+|++++.++.++.. .+++|+.|++++|.+++++. .+..+++|++|+|++
T Consensus 12 ~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455554 3 445666 666666666666642233333321 35667777777777887664 578899999999999
Q ss_pred CcccccccccccCCCCCCEEEecCCCCCCc
Q 037308 209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238 (321)
Q Consensus 209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 238 (321)
|.+.+..+..+..+. |+.|++.+|++...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 998766555565555 99999999887754
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=7.2e-08 Score=87.08 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=111.6
Q ss_pred CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308 58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI 134 (321)
Q Consensus 58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~ 134 (321)
.+|+.+.+..+. ..++.. + ++.+|+.+.+..+ ++.+. ..+.....|+. +.+..+... +.. .......|+.
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~-i~~~~~~~~--i~~--~~~~~~~l~~ 234 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN-MEFPNSLYY--LGD--FALSKTGVKN 234 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB-CCCCTTCCE--ECT--TTTTTCCCCE
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce-eecCCCceE--eeh--hhcccCCCce
Confidence 777777776432 333333 3 6777777777654 33333 23344555555 444332221 121 3334456777
Q ss_pred EEccCCCCCcccCccccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccc
Q 037308 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK 213 (321)
Q Consensus 135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~ 213 (321)
+.+.... ...-...+..+..++.+.+..+.. +.......+..++........+.+ ..+..+.+|+.+.+.. .+..
T Consensus 235 i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~-~i~~ 310 (394)
T 4fs7_A 235 IIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD-SVKF 310 (394)
T ss_dssp EEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT-TCCE
T ss_pred EEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc-ccce
Confidence 7776532 222223456677777777665321 111111134555555554432221 2355666777777754 3344
Q ss_pred cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccC
Q 037308 214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSY 279 (321)
Q Consensus 214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~ 279 (321)
.....|.++.+|+.+++.. .+...-..+|.++++|+.+++..+ ++.+. .++..|++|+++++..
T Consensus 311 I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4445566777777777754 233223356777777777777655 66665 3566677777776643
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=5.5e-09 Score=93.14 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=98.5
Q ss_pred CCCCccEEEccCCCC---------CcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccC-hhh--
Q 037308 128 HLNKLVILNLRGSKS---------LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSI-- 195 (321)
Q Consensus 128 ~l~~L~~L~l~~n~~---------~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~-- 195 (321)
.+++|+.|.+..... .+.++..+..+++|+.|.+++|.... ++....++|+.|++..+.+..-. ..+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHH
Confidence 455677776654321 01233344567888888887763222 23234678999998887765411 223
Q ss_pred hccCCCCeEeccc--Cccccc-----ccccc--cCCCCCCEEEecCCCCCCcccccc---CCCCCCcEEEcccCCCcc--
Q 037308 196 ERLLRLGHLDLSD--CKRLKS-----LPSSL--FKLKSLGVLNLGGCSNLQRLPECL---GQLSSPIILNLAKTNVER-- 261 (321)
Q Consensus 196 ~~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~-- 261 (321)
..+++|++|+++. +...+. +...+ ..+++|+.|++.+|.+....+..+ ..+++|+.|+++.|.++.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 2678999998853 221111 11222 357899999999887764333222 357889999999999873
Q ss_pred ---cchhhhccCCcCEEeccCCCCccc
Q 037308 262 ---IPESIIQLFVLRYLLLSYSERIQS 285 (321)
Q Consensus 262 ---l~~~l~~l~~L~~L~l~~n~~l~~ 285 (321)
++..+..+++|++|+++.| .+++
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred HHHHHhhcccCCcceEEECCCC-cCCH
Confidence 4445567899999999988 5654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=1.6e-07 Score=84.82 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=42.7
Q ss_pred cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccC
Q 037308 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSY 279 (321)
Q Consensus 218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~ 279 (321)
.+..+.+|+.+.+..+ +...-..+|.++++|+.+++..+ ++.+. .++.+|.+|+++.+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 4567778888888653 33333457888899999998654 77776 4677888888888754
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.64 E-value=6.3e-06 Score=73.74 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=47.1
Q ss_pred cCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+..|+.+.+..+ ++.+.. .+.++..|+.+.+.. .+.......+.++.+|+.+.+.++.+...-..+|.++.+|+.+.
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 344555554432 333332 244455555555543 22333333455556666666554433333334555556666666
Q ss_pred cccCCCcccc-hhhhccCCcCEEec
Q 037308 254 LAKTNVERIP-ESIIQLFVLRYLLL 277 (321)
Q Consensus 254 l~~n~l~~l~-~~l~~l~~L~~L~l 277 (321)
+..+ ++.+. .++.+|++|+++.+
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5433 44444 24455555555544
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=4.1e-08 Score=79.04 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=57.4
Q ss_pred hhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEc--ccCCCcc-
Q 037308 193 SSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNL--AKTNVER- 261 (321)
Q Consensus 193 ~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~- 261 (321)
..+...++|++|++++|.+.+. +...+...++|++|++++|.+... +...+...++|+.|++ ++|.+..
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3445556677777777765542 223344556777777777666543 3455666677888888 6777762
Q ss_pred ----cchhhhccCCcCEEeccCCCCcc
Q 037308 262 ----IPESIIQLFVLRYLLLSYSERIQ 284 (321)
Q Consensus 262 ----l~~~l~~l~~L~~L~l~~n~~l~ 284 (321)
+...+...++|++|++++| .+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n-~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFT-QQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCS-SHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCC-CCC
Confidence 4445566678888888877 444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=3.4e-08 Score=88.01 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=89.8
Q ss_pred CCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccc----cccccCCccEEEecc--cc------ccccChh
Q 037308 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL----LEISSGNINWLFLRE--TA------IEELPSS 194 (321)
Q Consensus 127 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~--~~------i~~l~~~ 194 (321)
..+++|+.|.+++|.. ..+++ + .+++|+.|++..|...... ....+++|+.|+++. +. +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3456777777776631 12333 3 3677777777765432211 111367777777742 11 1122222
Q ss_pred h--hccCCCCeEecccCcccccccccc---cCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc-ccch
Q 037308 195 I--ERLLRLGHLDLSDCKRLKSLPSSL---FKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE-RIPE 264 (321)
Q Consensus 195 ~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~-~l~~ 264 (321)
+ ..+++|++|++.+|.+.+..+..+ ..+++|+.|+++.|.+... ++..+..+++|+.|+++.|.++ ....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 346899999999888765433322 3578999999998876653 3334455789999999999887 3333
Q ss_pred hhhc-cCCcCEEeccCCC
Q 037308 265 SIIQ-LFVLRYLLLSYSE 281 (321)
Q Consensus 265 ~l~~-l~~L~~L~l~~n~ 281 (321)
.+.. + ..+++++.++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3433 2 3567777774
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=7.1e-06 Score=73.91 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=68.8
Q ss_pred cCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308 175 SGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 253 (321)
+..|+.+.+..+. ..+. ..+.+++.|+.+.+.. .+.......|.++.+|+.+.+..+ +......+|.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 4566666665432 3343 3466777888888763 445444556778888888888753 3333345788888888888
Q ss_pred cccCCCcccc-hhhhccCCcCEEeccCC
Q 037308 254 LAKTNVERIP-ESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 254 l~~n~l~~l~-~~l~~l~~L~~L~l~~n 280 (321)
+..+ ++.+. .+|.+|++|+++++.++
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 8654 77776 46788888888888765
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=7.7e-08 Score=76.11 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC-ccccccCCC----CCCcEEEcccCC-Ccc-cchhhhccCC
Q 037308 199 LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ-RLPECLGQL----SSPIILNLAKTN-VER-IPESIIQLFV 271 (321)
Q Consensus 199 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~----~~L~~L~l~~n~-l~~-l~~~l~~l~~ 271 (321)
..|+.||+++|.+++..-..+.++++|+.|++++|..++ ..-..+..+ ++|+.|++++|. +++ --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665555556777888888888875433 222334443 368888888874 772 2245667888
Q ss_pred cCEEeccCCCCccc
Q 037308 272 LRYLLLSYSERIQS 285 (321)
Q Consensus 272 L~~L~l~~n~~l~~ 285 (321)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=2.1e-07 Score=74.90 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=59.3
Q ss_pred CCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEe--cCCCCCCc----cc
Q 037308 176 GNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNL--GGCSNLQR----LP 240 (321)
Q Consensus 176 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~----~~ 240 (321)
++|++|++++|.+.+ +...+...+.|++|++++|.+.+. +...+...++|+.|++ ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 455666666666553 344566667888888888887653 3455677788999999 77776543 33
Q ss_pred cccCCCCCCcEEEcccCCCc
Q 037308 241 ECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 241 ~~~~~~~~L~~L~l~~n~l~ 260 (321)
+.+...++|+.|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 45556688999999999876
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.27 E-value=5.2e-05 Score=68.19 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=82.5
Q ss_pred cccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308 149 GIFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226 (321)
Q Consensus 149 ~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 226 (321)
.|..+..|+.+.+..... ++......+.+|+.+.+. +.++.++. .|.++.+|+.+.+.. .+.......|.++.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence 466778888888865321 111111246788888886 45677775 478889999999976 45555556788999999
Q ss_pred EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCC
Q 037308 227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 280 (321)
.+.+.. .....-..+|.++++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 999976 344444468999999999999887432 1 23455666776666544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.25 E-value=0.00012 Score=65.33 Aligned_cols=274 Identities=9% Similarity=0.036 Sum_probs=152.7
Q ss_pred CceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-CCcCc
Q 037308 3 KKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-LSAEK 81 (321)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~~l~~ 81 (321)
.+++.+.+. ++ ...+...+|.++.+|+.+++..+- + ......+...+|+.+.+..+ +..++.. +...+
T Consensus 46 ~~i~~v~ip-~~--vt~Ig~~aF~~C~~L~~I~lp~~v-~------~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~ 114 (379)
T 4h09_A 46 DRISEVRVN-SG--ITSIGEANFNSCYNMTKVTVASTV-T------SIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTD 114 (379)
T ss_dssp GGCSEEEEC-TT--EEEECTTTTTTCTTCCEEEECTTC-C------EECTTTTTTCCCCEEEECTT-CCEECTTTTTTCC
T ss_pred cCCEEEEeC-CC--ccChHHHHhhCCCCCCEEEeCCcc-e------EechhhhcCCCCceEECCce-eeEeccceeccCC
Confidence 355666653 11 235566789999999999996541 1 11122333356777766532 4444443 34457
Q ss_pred eeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc------------cCcc
Q 037308 82 LVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS------------LPSG 149 (321)
Q Consensus 82 L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------~p~~ 149 (321)
|+.+.+.++ +..+....+....+.. +.+. ..++ .+. ...+..+..++...+..+..... ....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~~l~~-~~~~-~~v~-~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNSSVKR-IVIP-KSVT-TIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCE-EEEC-TTCC-EEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred cccccCCCc-cccccccccccceeee-eecc-ceee-ccc-cchhcccccccccccccccceeecccceecccccceecc
Confidence 888888654 3333333333334443 2221 1122 221 11566777777777665431110 1111
Q ss_pred ccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308 150 IFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV 227 (321)
Q Consensus 150 l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 227 (321)
+.....+..+.+..... ..........+|+.+.+..+ +..+. ..+..+..|+.+.+..+ +.......+.++.+|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 23344455554443211 11111113556777666543 44444 34667778888888653 44444556778888888
Q ss_pred EEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEecc------------CCCCcccccCcccccc
Q 037308 228 LNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLS------------YSERIQSVSLPLARGI 294 (321)
Q Consensus 228 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~------------~n~~l~~~~~~~~l~~ 294 (321)
+.+.. .+......+|.++++|+.+.+.++.++.++ ..+.+|.+|+++.+. +|..|+++.+|.+++.
T Consensus 268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~v~~ 346 (379)
T 4h09_A 268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKSITL 346 (379)
T ss_dssp EEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred ccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECCccCE
Confidence 88865 333333356778888888888888888776 467778888888774 3555666656666655
Q ss_pred c
Q 037308 295 L 295 (321)
Q Consensus 295 l 295 (321)
+
T Consensus 347 I 347 (379)
T 4h09_A 347 I 347 (379)
T ss_dssp E
T ss_pred E
Confidence 4
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=2.6e-06 Score=67.30 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=18.3
Q ss_pred CCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS 165 (321)
Q Consensus 130 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~ 165 (321)
.+|++||+++|.+...--..+..+++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356666666665332222234455555555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=6.7e-06 Score=69.72 Aligned_cols=80 Identities=21% Similarity=0.130 Sum_probs=46.3
Q ss_pred hccCCCCeEecccCcccc--cccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCc-ccc-------h
Q 037308 196 ERLLRLGHLDLSDCKRLK--SLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVE-RIP-------E 264 (321)
Q Consensus 196 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~-------~ 264 (321)
.++++|+.|++++|.+.+ .++..++.+++|+.|+|++|.+.+. -...+..+ +|+.|++++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 345667777777776655 3344455667777777777665543 11223333 6777777777765 333 1
Q ss_pred hhhccCCcCEEe
Q 037308 265 SIIQLFVLRYLL 276 (321)
Q Consensus 265 ~l~~l~~L~~L~ 276 (321)
.+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345566666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=9.7e-06 Score=68.72 Aligned_cols=78 Identities=19% Similarity=0.136 Sum_probs=57.0
Q ss_pred cCCccEEEeccccccccC---hhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccc-------ccc
Q 037308 175 SGNINWLFLRETAIEELP---SSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLP-------ECL 243 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-------~~~ 243 (321)
+++|+.|++++|.+++++ ..+..+++|+.|++++|.+.+.-. ..+..+ +|+.|++++|++.+.+| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 677888888888888754 456788899999999988776411 223334 89999999988876554 246
Q ss_pred CCCCCCcEEE
Q 037308 244 GQLSSPIILN 253 (321)
Q Consensus 244 ~~~~~L~~L~ 253 (321)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788898887
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=8.5e-05 Score=59.73 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=50.7
Q ss_pred ChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccC---CCc
Q 037308 192 PSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKT---NVE 260 (321)
Q Consensus 192 ~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n---~l~ 260 (321)
...+...+.|++|+|++|.+.+. +...+..-++|+.|+|+.|.+... +.+++..-+.|+.|++++| .+.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 33445556677777776665543 222334556677777776665532 3344555566777777654 333
Q ss_pred -----ccchhhhccCCcCEEeccCC
Q 037308 261 -----RIPESIIQLFVLRYLLLSYS 280 (321)
Q Consensus 261 -----~l~~~l~~l~~L~~L~l~~n 280 (321)
.+.+.+..-+.|++|+++.|
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCC
Confidence 24445555667777777655
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00056 Score=54.94 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=58.6
Q ss_pred cCCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCC--CCC-----c
Q 037308 175 SGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCS--NLQ-----R 238 (321)
Q Consensus 175 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~--~~~-----~ 238 (321)
...|+.|++++|.+.+ +...+...+.|++|+|++|.+.+. +...+..-++|+.|++++|. ..+ .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 4456677777777764 444566778899999999887753 33446667789999997642 223 2
Q ss_pred cccccCCCCCCcEEEcccCCCc
Q 037308 239 LPECLGQLSSPIILNLAKTNVE 260 (321)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~ 260 (321)
+.+.+..-+.|+.|+++.|.+.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 4455666788999999877643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.0077 Score=44.87 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=12.2
Q ss_pred CCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308 201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC 233 (321)
Q Consensus 201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 233 (321)
+++|+|++|.+....+..+..+++|+.|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444443333322233333333333333333
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.97 E-value=0.014 Score=43.39 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEecCCCCCcc--cccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccc
Q 037308 158 KLDLSGCSKLK--RLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRL 212 (321)
Q Consensus 158 ~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~ 212 (321)
.++.+++ .++ .+|...+.+|+.|++++|.|+.++.. +..+++|++|+|++|...
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCC-CCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566663 344 66655577899999999999998854 788899999999998754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.46 E-value=27 Score=23.96 Aligned_cols=13 Identities=0% Similarity=-0.031 Sum_probs=5.2
Q ss_pred ccCCCCCCEEEec
Q 037308 219 LFKLKSLGVLNLG 231 (321)
Q Consensus 219 ~~~l~~L~~L~l~ 231 (321)
|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 3334444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.08 E-value=40 Score=23.10 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=30.0
Q ss_pred ccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecC
Q 037308 188 IEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG 232 (321)
Q Consensus 188 i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 232 (321)
++.+.. .|.++.+|+.+.|-. .+.......|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 444543 477788888888765 44555556677888888888765
Done!