BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037309
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 1   YRFVPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKYDKEGSGVMYFFTPR 60
           +RF PT  ELV +YL  K   + LP   I E ++YK  P +L E+    G+   YFFTPR
Sbjct: 19  FRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPER-ALFGAREWYFFTPR 77

Query: 61  DRKYPEGERPKRSVDGNGFWKASGKAEEVENFDILIAKKRSLVYYQGSYKKPKKTDWLMQ 120
           DRKYP G RP R+  GNG+WKA+G  + V      +  K++LV+Y G   +  KTDW+M 
Sbjct: 78  DRKYPNGSRPNRAA-GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMH 136

Query: 121 EFFMTGSSSSSARKGRPHNMKLDDWVLCKVYKNKKRDKEE 160
           E+ +  +  ++A   +  +++LDDWVLC++Y NKK + E+
Sbjct: 137 EYRLADAGRAAAGAKK-GSLRLDDWVLCRLY-NKKNEWEK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 8/154 (5%)

Query: 1   YRFVPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKYDKEGSGVMYFFTPR 60
           +RF PT +EL+  YL  K          I E ++YK  P  L  K    G    YFF+PR
Sbjct: 21  FRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYFFSPR 79

Query: 61  DRKYPEGERPKRSVDGNGFWKASGKAEEVENFDILIAKKRSLVYYQGSYKKPKKTDWLMQ 120
           DRKYP G RP R V G+G+WKA+G  + +      +  K++LV+Y G   K  KT+W+M 
Sbjct: 80  DRKYPNGSRPNR-VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMH 138

Query: 121 EFFMTGSSSSSARKGRPHNMKLDDWVLCKVYKNK 154
           E+ +      S R G   + KLDDWVLC++YK +
Sbjct: 139 EYRLI---EPSRRNG---STKLDDWVLCRIYKKQ 166


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 8/154 (5%)

Query: 1   YRFVPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKYDKEGSGVMYFFTPR 60
           +RF PT +EL+  YL  K          I E ++YK  P  L  K    G    YFF+PR
Sbjct: 24  FRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYFFSPR 82

Query: 61  DRKYPEGERPKRSVDGNGFWKASGKAEEVENFDILIAKKRSLVYYQGSYKKPKKTDWLMQ 120
           DRKYP G RP R V G+G+WKA+G  + +      +  K++LV+Y G   K  KT+W+M 
Sbjct: 83  DRKYPNGSRPNR-VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMH 141

Query: 121 EFFMTGSSSSSARKGRPHNMKLDDWVLCKVYKNK 154
           E+ +      S R G   + KLDDWVLC++YK +
Sbjct: 142 EYRLI---EPSRRNG---STKLDDWVLCRIYKKQ 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,423,795
Number of Sequences: 62578
Number of extensions: 401174
Number of successful extensions: 601
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 9
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)