Query 037309
Match_columns 287
No_of_seqs 180 out of 939
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.8E-56 3.3E-60 385.7 14.8 152 1-155 19-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.2E-55 1.1E-59 381.5 13.6 148 1-156 21-168 (171)
3 2c4b_A Barnase mcoeeti fusion; 34.2 28 0.00095 29.0 3.1 33 6-41 4-38 (143)
4 1cmb_A Met APO-repressor; DNA- 25.4 60 0.0021 25.0 3.4 39 4-46 50-88 (104)
5 3nr5_A MAF1, repressor of RNA 12.6 54 0.0019 27.7 0.6 13 29-41 119-131 (164)
6 2jv2_A Putative uncharacterize 9.9 1.4E+02 0.005 22.1 2.1 28 8-36 27-54 (83)
7 1ldd_A APC2WHB, anaphase promo 8.4 1.8E+02 0.0061 21.3 2.0 22 2-24 41-63 (74)
8 2oh5_A Polyhedrin, C-polyhedri 7.0 2.7E+02 0.0093 23.7 2.8 28 77-104 140-168 (248)
9 2lau_A THAP domain-containing 6.6 2E+02 0.0069 20.3 1.6 13 5-17 28-40 (81)
10 3i9v_7 NADH-quinone oxidoreduc 6.6 9.6E+02 0.033 19.1 6.0 72 9-83 15-96 (129)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.8e-56 Score=385.65 Aligned_cols=152 Identities=42% Similarity=0.809 Sum_probs=130.5
Q ss_pred CcccCChHHHHHHHHHHhHhCCCCCCCceeeccCCCCCCcccccccccCCCceEEEEeecCCCCCCCCCCccccCCCCeE
Q 037309 1 YRFVPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKYDKEGSGVMYFFTPRDRKYPEGERPKRSVDGNGFW 80 (287)
Q Consensus 1 FRF~PTDEELV~~YL~~Ki~g~pl~~~~I~evDVY~~ePwdLp~~~~~~ge~ewYFFs~r~~k~~~G~R~nRaVt~~G~W 80 (287)
|||+|||||||.+||++|+.|.+++.++|.++|||++|||+||+.+ ..++++|||||++++||++|.|++|+ |++|||
T Consensus 19 fRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~-~~g~~ewYFFs~r~~ky~~g~R~nR~-t~~G~W 96 (174)
T 3ulx_A 19 FRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERA-LFGAREWYFFTPRDRKYPNGSRPNRA-AGNGYW 96 (174)
T ss_dssp CCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGC-SSCSSEEEEEEECCC-----CCSCEE-ETTEEE
T ss_pred ceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhh-ccCCceEEEEeccccccCCCCCceee-cCCceE
Confidence 8999999999999999999999999999999999999999999998 67889999999999999999999999 999999
Q ss_pred EecccCeeEeeCCeEEEEEEEEEEeeCcCCCCCCcCeEEEEEeeCCCCCccccCCCCCCCCCCCEEEEEEEEeCC
Q 037309 81 KASGKAEEVENFDILIAKKRSLVYYQGSYKKPKKTDWLMQEFFMTGSSSSSARKGRPHNMKLDDWVLCKVYKNKK 155 (287)
Q Consensus 81 K~tG~~k~I~~~g~~VG~KKtLvFy~gr~p~g~kT~WvMhEYrL~~~~~~~~~~~~~~~~~~~e~VLCRIy~K~~ 155 (287)
|+||++++|..+|.+||+||+|+||.|++|++.||+|+||||+|........... ...+..++|||||||+|++
T Consensus 97 katG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~-~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 97 KATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAK-KGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp EECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEEEEEEESCC
T ss_pred ccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccc-cCCCCCCCEEEEEEEEcCC
Confidence 9999999999879999999999999999999999999999999998754321000 0123578999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.2e-55 Score=381.54 Aligned_cols=148 Identities=40% Similarity=0.754 Sum_probs=127.0
Q ss_pred CcccCChHHHHHHHHHHhHhCCCCCCCceeeccCCCCCCcccccccccCCCceEEEEeecCCCCCCCCCCccccCCCCeE
Q 037309 1 YRFVPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKYDKEGSGVMYFFTPRDRKYPEGERPKRSVDGNGFW 80 (287)
Q Consensus 1 FRF~PTDEELV~~YL~~Ki~g~pl~~~~I~evDVY~~ePwdLp~~~~~~ge~ewYFFs~r~~k~~~G~R~nRaVt~~G~W 80 (287)
|||+|||||||.+||++|+.|.+++.++|+++|||++|||+||+.+ ..++++|||||++++||++|.|++|+ |++|||
T Consensus 21 fRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~-~~g~~ewyFFs~r~~k~~~g~R~~R~-t~~G~W 98 (171)
T 1ut7_A 21 FRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA-LFGEKEWYFFSPRDRKYPNGSRPNRV-AGSGYW 98 (171)
T ss_dssp EEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS-SSCSSEEEEEEECCC-------CCEE-ETTEEE
T ss_pred ceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh-hcCCccEEEEeccccccCCCCccccc-CCCCEE
Confidence 8999999999999999999999999999999999999999999998 78899999999999999999999999 999999
Q ss_pred EecccCeeEeeCCeEEEEEEEEEEeeCcCCCCCCcCeEEEEEeeCCCCCccccCCCCCCCCCCCEEEEEEEEeCCC
Q 037309 81 KASGKAEEVENFDILIAKKRSLVYYQGSYKKPKKTDWLMQEFFMTGSSSSSARKGRPHNMKLDDWVLCKVYKNKKR 156 (287)
Q Consensus 81 K~tG~~k~I~~~g~~VG~KKtLvFy~gr~p~g~kT~WvMhEYrL~~~~~~~~~~~~~~~~~~~e~VLCRIy~K~~~ 156 (287)
|+||++++|+.++.+||+||+|+||.|++|++.||+|+||||+|....... .....++|||||||+|+..
T Consensus 99 k~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~------~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 99 KATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEEEEECC--
T ss_pred eccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc------CcccCCCEEEEEEEEcCCC
Confidence 999999999988899999999999999999999999999999999875321 1235789999999999764
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=34.24 E-value=28 Score=28.96 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHhHhCCCCCCCcee--eccCCCCCCcc
Q 037309 6 TCKELVTYYLRNKILERPLPPSKIR--EANIYKHSPTE 41 (287)
Q Consensus 6 TDEELV~~YL~~Ki~g~pl~~~~I~--evDVY~~ePwd 41 (287)
|+.+-|..||.. ...||...|. +++--+.+|.+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 555666689887 4567777776 45667788864
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=25.42 E-value=60 Score=25.02 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=33.6
Q ss_pred cCChHHHHHHHHHHhHhCCCCCCCceeeccCCCCCCccccccc
Q 037309 4 VPTCKELVTYYLRNKILERPLPPSKIREANIYKHSPTELSEKY 46 (287)
Q Consensus 4 ~PTDEELV~~YL~~Ki~g~pl~~~~I~evDVY~~ePwdLp~~~ 46 (287)
|-|..||++.-...-..|+|+|. +.|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56888999988888899999986 5789999999999876
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.64 E-value=54 Score=27.70 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=10.9
Q ss_pred eeeccCCCCCCcc
Q 037309 29 IREANIYKHSPTE 41 (287)
Q Consensus 29 I~evDVY~~ePwd 41 (287)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5688999999983
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=9.89 E-value=1.4e+02 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHhCCCCCCCceeeccCCC
Q 037309 8 KELVTYYLRNKILERPLPPSKIREANIYK 36 (287)
Q Consensus 8 EELV~~YL~~Ki~g~pl~~~~I~evDVY~ 36 (287)
.++ ..||++++.|+|+..+-+..+++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 455 4699999999999765555577654
No 7
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=8.43 E-value=1.8e+02 Score=21.26 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.0
Q ss_pred cccC-ChHHHHHHHHHHhHhCCCC
Q 037309 2 RFVP-TCKELVTYYLRNKILERPL 24 (287)
Q Consensus 2 RF~P-TDEELV~~YL~~Ki~g~pl 24 (287)
.|.. |++||-. ||..|+....+
T Consensus 41 ~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 41 GYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCcCCHHHHHH-HHHHHHhCCeE
Confidence 4556 7788885 99999998765
No 8
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=7.03 E-value=2.7e+02 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCeEEecccC-eeEeeCCeEEEEEEEEEE
Q 037309 77 NGFWKASGKA-EEVENFDILIAKKRSLVY 104 (287)
Q Consensus 77 ~G~WK~tG~~-k~I~~~g~~VG~KKtLvF 104 (287)
+--|.+||-. +.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 4459999864 566799999999876644
No 9
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=6.63 E-value=2e+02 Score=20.32 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=10.0
Q ss_pred CChHHHHHHHHHH
Q 037309 5 PTCKELVTYYLRN 17 (287)
Q Consensus 5 PTDEELV~~YL~~ 17 (287)
|+|+|+....|..
T Consensus 28 Pkd~~~~~~Wl~~ 40 (81)
T 2lau_A 28 PKDAELRRLWLKN 40 (81)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999988766654
No 10
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=6.58 E-value=9.6e+02 Score=19.10 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=38.3
Q ss_pred HHHHHHHHHhHhCCCCCCCceeecc----CCCC-CCcccccccc----cCCCceEEEEeecCCCCCCCCC-CccccCCCC
Q 037309 9 ELVTYYLRNKILERPLPPSKIREAN----IYKH-SPTELSEKYD----KEGSGVMYFFTPRDRKYPEGER-PKRSVDGNG 78 (287)
Q Consensus 9 ELV~~YL~~Ki~g~pl~~~~I~evD----VY~~-ePwdLp~~~~----~~ge~ewYFFs~r~~k~~~G~R-~nRaVt~~G 78 (287)
||+. +|+.-+....+ .+=.++| ||.. -|||||..-- ..+.++=||+..-......=.+ .-|.-.+.-
T Consensus 15 ell~-Wl~eyA~~~g~--~FekeaDFPDyIYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~islr~~g~h~ 91 (129)
T 3i9v_7 15 ELLS-WMREYAQAKGV--RFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHI 91 (129)
T ss_dssp HHHH-HHHHHHHHTTC--CEEEEEECHHHHSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEEEETTTTE
T ss_pred HHHH-HHHHHHHhcCC--ceeecccccHHHHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEEecCCCcc
Confidence 4453 66666665543 2334555 7876 5999997531 2234677777544322221111 123323455
Q ss_pred eEEec
Q 037309 79 FWKAS 83 (287)
Q Consensus 79 ~WK~t 83 (287)
+|++.
T Consensus 92 hwh~h 96 (129)
T 3i9v_7 92 HLHAH 96 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 89987
Done!