BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037310
(656 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 333 LQNAPGIGLWKEVTRMSLMQIRIRRLLEXXXXPHLQTLFLGSNDLNEVNRDFFQFMASLR 392
+++ GI V ++L ++ + +L L L N L + F + +L+
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 393 VLTLSDG---SLPGHLLTGISNLVSLQHLDPARSKIRRLPMEL-KYLVHLKRLNLEFTRL 448
L L + SLP + ++NL +L+ A ++++ LP + L +L L+L + +L
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLT---YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 449 TRIPQEVISNLKMLRVLRMYE 469
+P+ V L L+ LR+Y+
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQ 190
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 33/158 (20%)
Query: 340 GLWKEVTRMSLMQIRIRRLL--EXXXXPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLS 397
G+ E + L + RI+ L E PHL+ L L N ++ V F + +LR L L
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 398 DGSL---PGHLLTGISNLVSLQHLDPARSKIRRL-----------------PMELKYLVH 437
L P + TG+SNL L D + +KI L +L Y+ H
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKL---DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 438 --------LKRLNLEFTRLTRIPQEVISNLKMLRVLRM 467
L++L LE LT IP E +S+L L VLR+
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%)
Query: 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425
+L+ L+LGSN L + F + L VL L L LV L+ L +K+
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 426 RRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKML 462
LP ++ L HL L L+ +L IP L L
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 74 LEKAEDIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG 130
+E+A+D +++ K + +L+LDD+W+ V A + +++ TT + +
Sbjct: 220 IEEAKDRLRILMLRKHPRSLLILDDVWDS--------WVLKAFDSQCQILLTTRDKSVTD 271
Query: 131 QMEAHKSF-EVEC-LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188
+ K VE LG + ++ + V D+PE A +++KEC G PL + +
Sbjct: 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNM----KKADLPEQAHSIIKECKGSPLVVSLI 327
Query: 189 GRAMASKKTPREWEHAIE 206
G + + P WE+ ++
Sbjct: 328 GALL--RDFPNRWEYYLK 343
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 74 LEKAEDIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG 130
+E+A+D +++ K + +L+LDD+W+ V A + +++ TT + +
Sbjct: 226 IEEAKDRLRILMLRKHPRSLLILDDVWDS--------WVLKAFDSQCQILLTTRDKSVTD 277
Query: 131 QMEAHKSF-EVEC-LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188
+ K VE LG + ++ + V D+PE A +++KEC G PL + +
Sbjct: 278 SVMGPKYVVPVESSLGKEKGLEILSLFVNM----KKADLPEQAHSIIKECKGSPLVVSLI 333
Query: 189 GRAMASKKTPREWEHAIE 206
G + + P WE+ ++
Sbjct: 334 GALL--RDFPNRWEYYLK 349
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 74 LEKAEDIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG 130
+E+A+D +V+ K + +L+LDD+W+P V A +++ TT + +
Sbjct: 220 IEEAKDRLRVLMLRKHPRSLLILDDVWDP--------WVLKAFDNQCQILLTTRDKSVTD 271
Query: 131 QMEAHKSF-EVEC-LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188
+ K VE LG + ++ + V D+P A +++KEC G PL + +
Sbjct: 272 SVMGPKHVVPVESGLGREKGLEILSLFVNM----KKEDLPAEAHSIIKECKGSPLVVSLI 327
Query: 189 GRAMASKKTPREWEH 203
G + + P W +
Sbjct: 328 GALL--RDFPNRWAY 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 74 LEKAEDIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG 130
+E+A+D +V+ K + +L+LDD+W+P V A +++ TT + +
Sbjct: 227 IEEAKDRLRVLMLRKHPRSLLILDDVWDP--------WVLKAFDNQCQILLTTSDKSVTD 278
Query: 131 QMEAHKSF-EVEC-LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188
+ K VE LG + ++ + V D+P A +++KEC G PL + +
Sbjct: 279 SVMGPKHVVPVESGLGREKGLEILSLFVNM----KKEDLPAEAHSIIKECKGSPLVVSLI 334
Query: 189 GRAMASKKTPREWEH 203
G + + P W +
Sbjct: 335 GALL--RDFPNRWAY 347
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 25/168 (14%)
Query: 327 VLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLEXXXXPHLQTLFLGSNDLNEVNRDFFQ 386
LAG+ G+ L +++ Q+R+ HL TL L L E+ F+
Sbjct: 66 ALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFR 125
Query: 387 FMASLRVLTLSDG---SLPGHLLTGISNLVSL-----------QHLDPARSKIRRL---- 428
+A+L+ L L D +LP + + NL L +H + RL
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 429 -------PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYE 469
P + L L L L L+ +P EV+ L+ L+ LR+ +
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 264 ICEGLLDEYDGIRARNQGYSLICTLLHACLLEKEEE-------NCVKMHDVIRDMALWIA 316
+CE + E GI+A+N ++ L E++EE N +K HD I +AL A
Sbjct: 149 VCESGIIEIGGIKAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRA 208
Query: 317 STIDEKEKFLVLAGVGL 333
+I +K + G GL
Sbjct: 209 RSIKTNQKLPIGLGQGL 225
>pdb|3IRA|A Chain A, The Crystal Structure Of One Domain Of The Conserved
Protein From Methanosarcina Mazei Go1
Length = 173
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 86 RKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG--QMEAHKSFEVECL 143
++K LL + PVD G R NK VF ++ + M AH+SFE E +
Sbjct: 8 KEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEV 67
Query: 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKEC---GGLPLALI 186
+ +KV R + PDI + TV + GG PL +I
Sbjct: 68 AGLMNEAFVSIKVDR---EERPDIDNIYMTVCQIILGRGGWPLNII 110
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 367 LQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGI-SNLVSLQHLDPARSKI 425
L L+LG N L + F + SL L LS L L G+ L L+ L +++
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL 112
Query: 426 RRLPMEL-KYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYE 469
+ LP + L LK L L +L +P V L L+ + +++
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 385 FQFMASLRVLTLSDGSLPG---HLLTGISNL--VSLQHLDPARSKIRRLPME----LKYL 435
F+ + +L +L LS+ ++ LL G+ NL + QH + AR R P LK L
Sbjct: 476 FRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGL 535
Query: 436 VHLKRLNLEFTRLTRIPQEVISNLKMLRVL 465
HL LNLE L IP V NL L+ +
Sbjct: 536 SHLHILNLESNGLDEIPVGVFKNLFELKSI 565
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 383 DF-FQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKR- 440
DF FQ++ L L + D ++P + LVSL++L +++ + + V L
Sbjct: 322 DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS 381
Query: 441 ----LNLEFTRLTRIPQEVISNLKMLRVLRM 467
LNL +++I S L LR+L +
Sbjct: 382 PLLTLNLTKNHISKIANGTFSWLGQLRILDL 412
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425
HL+ L LG N + ++ F +ASL L L D L L L+ L + I
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 426 RRLP-MELKYLVHLKRLNL-EFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483
+P + L RL+L E +L I + L L+ L + C + L+G
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219
Query: 484 GREV 487
E+
Sbjct: 220 LEEL 223
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 383 DF-FQFMASLRVLTLSDGSLPG---HLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVH 437
DF FQ++ L L + D +PG ++ TG+ NL L L + + +R L E L H
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS-LSNSFTSLRTLTNETFVSLAH 385
Query: 438 --LKRLNLEFTRLTRIPQEVISNLKMLRVLRM 467
L LNL ++++I + S L L VL +
Sbjct: 386 SPLHILNLTKNKISKIESDAFSWLGHLEVLDL 417
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 383 DF-FQFMASLRVLTLSDGSLPG---HLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVH 437
DF FQ++ L L + D +PG ++ TG+ NL L L + + +R L E L H
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS-LSNSFTSLRTLTNETFVSLAH 390
Query: 438 --LKRLNLEFTRLTRIPQEVISNLKMLRVLRM 467
L LNL ++++I + S L L VL +
Sbjct: 391 SPLHILNLTKNKISKIESDAFSWLGHLEVLDL 422
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 383 DF-FQFMASLRVLTLSDGSLPG---HLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVH 437
DF FQ++ L L + D +PG ++ TG+ NL L L + + +R L E L H
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS-LSNSFTSLRTLTNETFVSLAH 380
Query: 438 --LKRLNLEFTRLTRIPQEVISNLKMLRVLRM 467
L LNL ++++I + S L L VL +
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 385 FQFMASLRVLTLSDGSLPGHLLTG--ISNLVSLQHLDPARSKIRRLPMELKYLVHLKR-- 440
F +A+L VLTL+ +L G +L+G L SL+ L + I+++ + ++++R
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLNMRRFH 157
Query: 441 -LNLEFTRLTRIPQEVISNL--KMLRVLRM 467
L+L F ++ I +E + N K +LR+
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 385 FQFMASLRVLTLSDGSLPGHLLTG--ISNLVSLQHLDPARSKIRRLPMELKYLVHLKR-- 440
F +A+L VLTL+ +L G +L+G L SL+ L + I+++ + ++++R
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLNMRRFH 157
Query: 441 -LNLEFTRLTRIPQEVISNL--KMLRVLRM 467
L+L F ++ I +E + N K +LR+
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 51/152 (33%)
Query: 412 LVSLQHLDPARSKIRR---LPMELKYLVHLKRLNLE------------------------ 444
L +LQ LD + S I ++LK L HL+ LNL
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 445 FTRL-TRIPQEVISNLKMLRVLRMYECGSDKQ----------------EGDSILIGG--- 484
FT L + P NL +LRVL + C D +G+S G
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK 467
Query: 485 ----REVLVVEILSLQHLNVLTVTLESFCALR 512
+ V +EIL L N+L++ ++F LR
Sbjct: 468 TNLLQMVGSLEILILSSCNLLSIDQQAFHGLR 499
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,309,556
Number of Sequences: 62578
Number of extensions: 662613
Number of successful extensions: 1500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 74
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)