Query 037310
Match_columns 656
No_of_seqs 252 out of 3641
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-73 6.1E-78 629.1 39.7 574 1-588 175-790 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-55 4.8E-60 513.9 35.6 594 3-634 205-898 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.7E-41 1E-45 338.2 16.4 267 3-272 17-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 2.6E-19 5.6E-24 210.6 8.6 278 341-634 116-409 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.1E-19 6.7E-24 210.0 7.8 280 340-635 137-434 (968)
6 KOG0444 Cytoskeletal regulator 99.7 1.1E-19 2.4E-24 183.8 -5.8 303 324-634 35-367 (1255)
7 KOG4194 Membrane glycoprotein 99.7 3.8E-18 8.3E-23 171.8 1.5 264 329-621 157-431 (873)
8 PLN03210 Resistant to P. syrin 99.7 9.8E-17 2.1E-21 189.1 13.6 274 323-623 591-911 (1153)
9 KOG0444 Cytoskeletal regulator 99.7 1.1E-18 2.4E-23 176.7 -3.1 258 334-624 93-381 (1255)
10 KOG4194 Membrane glycoprotein 99.7 1.5E-18 3.2E-23 174.7 -3.0 257 340-623 146-409 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 1.5E-17 3.3E-22 160.4 -3.1 259 339-617 202-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 1.2E-16 2.6E-21 154.3 -7.8 216 346-584 48-267 (565)
13 KOG0617 Ras suppressor protein 99.5 3.3E-16 7.2E-21 133.8 -4.9 159 333-507 23-184 (264)
14 KOG0618 Serine/threonine phosp 99.4 2.8E-14 6.1E-19 151.9 0.9 245 344-618 220-489 (1081)
15 KOG0617 Ras suppressor protein 99.4 4.1E-15 8.8E-20 127.3 -5.2 169 354-542 22-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.4 2.9E-13 6.2E-18 148.6 7.7 131 323-471 203-333 (788)
17 PRK04841 transcriptional regul 99.4 1.4E-11 3E-16 144.6 21.8 274 4-316 31-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.3 1.3E-11 2.9E-16 136.4 12.7 231 326-580 183-427 (754)
19 PF05729 NACHT: NACHT domain 99.3 3.1E-11 6.7E-16 110.6 11.6 144 6-157 1-164 (166)
20 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.9E-14 108.3 21.2 181 4-192 42-242 (269)
21 PRK15370 E3 ubiquitin-protein 99.2 3.1E-12 6.7E-17 141.4 2.3 199 344-579 179-378 (754)
22 KOG0618 Serine/threonine phosp 99.2 1.2E-12 2.6E-17 139.7 -1.5 251 347-634 182-435 (1081)
23 PRK15387 E3 ubiquitin-protein 99.2 7.7E-11 1.7E-15 129.7 11.1 213 329-583 230-460 (788)
24 KOG4237 Extracellular matrix p 99.2 7.8E-13 1.7E-17 128.1 -3.9 273 323-614 48-355 (498)
25 COG2909 MalT ATP-dependent tra 99.1 4.8E-10 1E-14 119.8 14.2 276 4-316 36-338 (894)
26 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-11 6.9E-16 123.4 1.6 182 344-535 24-233 (319)
27 KOG4658 Apoptotic ATPase [Sign 99.1 5.6E-11 1.2E-15 133.6 2.9 251 356-623 514-788 (889)
28 PRK00411 cdc6 cell division co 99.1 2.3E-08 5E-13 105.3 22.5 182 4-189 54-256 (394)
29 KOG4237 Extracellular matrix p 99.0 8.3E-12 1.8E-16 121.1 -4.5 107 365-471 67-175 (498)
30 PF14580 LRR_9: Leucine-rich r 99.0 4.5E-10 9.7E-15 101.3 4.4 114 354-471 8-124 (175)
31 TIGR00635 ruvB Holliday juncti 99.0 1.4E-08 3.1E-13 102.8 15.6 255 5-300 30-292 (305)
32 PRK00080 ruvB Holliday junctio 98.9 2.3E-08 5E-13 102.0 15.7 255 5-300 51-313 (328)
33 PRK06893 DNA replication initi 98.9 4.7E-09 1E-13 100.8 9.4 154 5-191 39-206 (229)
34 COG2256 MGS1 ATPase related to 98.9 7.7E-08 1.7E-12 94.9 17.7 202 4-235 47-265 (436)
35 PF01637 Arch_ATPase: Archaeal 98.9 1.3E-08 2.9E-13 98.8 12.6 177 5-187 20-233 (234)
36 cd00116 LRR_RI Leucine-rich re 98.9 3.8E-10 8.2E-15 115.5 1.6 235 362-616 20-289 (319)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.9E-14 98.2 4.5 134 335-471 11-151 (175)
38 TIGR02928 orc1/cdc6 family rep 98.9 4.6E-07 1E-11 94.4 24.1 276 4-297 39-350 (365)
39 COG3903 Predicted ATPase [Gene 98.8 5.8E-09 1.3E-13 103.4 6.2 294 4-318 13-316 (414)
40 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.7E-08 5.8E-13 96.1 9.7 154 4-190 37-203 (226)
41 KOG0532 Leucine-rich repeat (L 98.7 2.5E-10 5.5E-15 116.0 -5.8 193 363-578 73-270 (722)
42 PF13173 AAA_14: AAA domain 98.7 7.4E-08 1.6E-12 83.5 9.2 119 5-147 2-126 (128)
43 PF13401 AAA_22: AAA domain; P 98.7 3.8E-08 8.3E-13 86.0 6.9 117 4-125 3-125 (131)
44 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.7E-14 111.1 -3.2 146 345-508 100-246 (722)
45 KOG3207 Beta-tubulin folding c 98.6 8.6E-09 1.9E-13 101.9 1.4 202 362-614 118-335 (505)
46 PRK08727 hypothetical protein; 98.6 2.8E-07 6.2E-12 88.7 9.8 147 6-185 42-201 (233)
47 KOG1259 Nischarin, modulator o 98.5 9.7E-09 2.1E-13 96.5 -1.1 132 361-508 280-411 (490)
48 PRK09087 hypothetical protein; 98.5 3.8E-07 8.2E-12 87.0 9.7 143 5-189 44-196 (226)
49 PRK08084 DNA replication initi 98.5 4.7E-07 1E-11 87.4 10.3 154 4-190 44-211 (235)
50 COG4886 Leucine-rich repeat (L 98.5 2.7E-08 5.7E-13 105.0 1.2 108 360-470 111-219 (394)
51 PRK04195 replication factor C 98.5 4.7E-06 1E-10 89.6 18.3 154 5-187 39-201 (482)
52 COG4886 Leucine-rich repeat (L 98.5 9.5E-08 2.1E-12 100.8 4.8 193 368-581 96-290 (394)
53 PRK13342 recombination factor 98.5 3.9E-06 8.4E-11 88.4 16.6 155 4-189 35-197 (413)
54 KOG3207 Beta-tubulin folding c 98.5 3.9E-08 8.4E-13 97.4 0.9 132 494-635 195-332 (505)
55 cd01128 rho_factor Transcripti 98.5 6.1E-07 1.3E-11 86.4 8.9 92 5-98 16-114 (249)
56 KOG2028 ATPase related to the 98.5 1.2E-05 2.6E-10 78.1 17.3 157 3-183 160-331 (554)
57 PLN03150 hypothetical protein; 98.4 5.7E-07 1.2E-11 99.5 9.0 80 391-471 420-501 (623)
58 PF13855 LRR_8: Leucine rich r 98.4 1.5E-07 3.2E-12 69.5 3.0 59 413-471 1-60 (61)
59 PF13855 LRR_8: Leucine rich r 98.4 1.3E-07 2.9E-12 69.8 2.6 59 366-424 2-60 (61)
60 KOG2120 SCF ubiquitin ligase, 98.4 3.5E-09 7.6E-14 99.4 -7.3 178 414-615 186-373 (419)
61 PRK08903 DnaA regulatory inact 98.4 1.6E-06 3.5E-11 83.6 9.7 152 4-192 41-203 (227)
62 PRK12402 replication factor C 98.4 8.1E-06 1.7E-10 84.1 15.4 174 5-186 36-224 (337)
63 PF00308 Bac_DnaA: Bacterial d 98.4 1.2E-06 2.6E-11 83.3 8.4 162 5-188 34-208 (219)
64 PRK05642 DNA replication initi 98.4 1.9E-06 4.1E-11 83.0 9.8 152 6-190 46-210 (234)
65 PRK14961 DNA polymerase III su 98.4 7.1E-06 1.5E-10 84.7 14.3 95 86-184 118-216 (363)
66 PRK14087 dnaA chromosomal repl 98.3 3.9E-06 8.5E-11 88.6 12.4 169 6-192 142-323 (450)
67 KOG1259 Nischarin, modulator o 98.3 5.9E-08 1.3E-12 91.3 -1.3 129 340-472 281-411 (490)
68 PRK09376 rho transcription ter 98.3 1.3E-06 2.8E-11 87.7 7.9 90 6-97 170-266 (416)
69 PRK07003 DNA polymerase III su 98.3 2.1E-05 4.5E-10 85.4 17.4 172 5-188 38-221 (830)
70 PF14516 AAA_35: AAA-like doma 98.3 0.00013 2.9E-09 74.2 22.6 181 5-195 31-246 (331)
71 PTZ00112 origin recognition co 98.3 2.3E-05 5E-10 85.6 17.6 151 6-158 782-951 (1164)
72 PLN03025 replication factor C 98.3 5.6E-06 1.2E-10 84.1 12.4 158 4-183 33-195 (319)
73 PRK14949 DNA polymerase III su 98.3 7.2E-06 1.6E-10 90.6 12.8 97 85-185 117-217 (944)
74 PRK14963 DNA polymerase III su 98.3 1.5E-05 3.2E-10 85.1 14.6 170 5-185 36-214 (504)
75 PRK06620 hypothetical protein; 98.3 3.6E-06 7.8E-11 79.6 8.9 135 6-185 45-186 (214)
76 TIGR00678 holB DNA polymerase 98.3 2.2E-05 4.7E-10 73.2 14.0 88 86-183 95-186 (188)
77 cd00009 AAA The AAA+ (ATPases 98.2 5.7E-06 1.2E-10 73.7 9.6 107 4-127 18-131 (151)
78 PLN03150 hypothetical protein; 98.2 2.5E-06 5.4E-11 94.5 8.5 105 366-471 419-526 (623)
79 PRK00440 rfc replication facto 98.2 2.2E-05 4.8E-10 80.2 14.9 159 4-185 37-200 (319)
80 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.4E-13 93.3 -5.8 176 436-637 185-371 (419)
81 PRK05564 DNA polymerase III su 98.2 2.9E-05 6.3E-10 78.7 15.0 154 5-185 26-187 (313)
82 COG1474 CDC6 Cdc6-related prot 98.2 4.4E-05 9.5E-10 78.1 16.2 178 7-188 44-238 (366)
83 TIGR00767 rho transcription te 98.2 5.4E-06 1.2E-10 83.7 9.3 91 6-98 169-266 (415)
84 PRK14960 DNA polymerase III su 98.2 1.5E-05 3.3E-10 85.4 13.0 168 5-184 37-215 (702)
85 PRK14088 dnaA chromosomal repl 98.2 9.4E-06 2E-10 85.7 11.2 162 6-188 131-305 (440)
86 PRK06645 DNA polymerase III su 98.2 2.6E-05 5.6E-10 82.9 14.4 171 5-184 43-225 (507)
87 COG3899 Predicted ATPase [Gene 98.2 4.7E-05 1E-09 86.7 17.3 209 85-315 152-385 (849)
88 PRK14957 DNA polymerase III su 98.2 2.5E-05 5.5E-10 83.5 14.3 160 5-189 38-222 (546)
89 TIGR00362 DnaA chromosomal rep 98.2 1.1E-05 2.4E-10 84.9 11.4 160 6-187 137-309 (405)
90 COG3267 ExeA Type II secretory 98.2 5.7E-05 1.2E-09 70.6 14.0 183 3-190 49-247 (269)
91 PRK14962 DNA polymerase III su 98.1 3.4E-05 7.3E-10 81.7 14.2 102 86-191 116-222 (472)
92 PF05621 TniB: Bacterial TniB 98.1 5.1E-05 1.1E-09 73.7 14.1 176 4-182 60-255 (302)
93 PRK12323 DNA polymerase III su 98.1 2.3E-05 4.9E-10 83.9 12.4 97 85-185 122-222 (700)
94 PRK00149 dnaA chromosomal repl 98.1 2E-05 4.3E-10 84.1 11.6 159 6-186 149-320 (450)
95 TIGR02880 cbbX_cfxQ probable R 98.1 3.3E-05 7.1E-10 76.7 12.3 133 7-159 60-211 (284)
96 TIGR01242 26Sp45 26S proteasom 98.1 2.5E-05 5.4E-10 80.9 12.1 150 5-182 156-328 (364)
97 PRK12422 chromosomal replicati 98.1 7.3E-05 1.6E-09 78.8 15.5 152 6-181 142-306 (445)
98 PRK14956 DNA polymerase III su 98.1 7.6E-06 1.6E-10 85.2 7.9 166 6-183 41-217 (484)
99 TIGR02397 dnaX_nterm DNA polym 98.1 6.8E-05 1.5E-09 77.8 14.9 160 5-188 36-218 (355)
100 PRK14086 dnaA chromosomal repl 98.1 7.5E-05 1.6E-09 80.1 15.1 161 6-188 315-488 (617)
101 PRK13341 recombination factor 98.1 6.3E-05 1.4E-09 83.6 14.9 149 4-183 51-212 (725)
102 PF12799 LRR_4: Leucine Rich r 98.1 4.5E-06 9.8E-11 56.4 3.6 41 413-453 1-41 (44)
103 PRK09112 DNA polymerase III su 98.1 5.5E-05 1.2E-09 77.0 13.2 171 5-186 45-238 (351)
104 KOG0531 Protein phosphatase 1, 98.0 6.1E-07 1.3E-11 94.8 -1.2 121 346-471 75-197 (414)
105 TIGR02881 spore_V_K stage V sp 98.0 4.2E-05 9.1E-10 75.3 11.8 134 5-160 42-195 (261)
106 CHL00181 cbbX CbbX; Provisiona 98.0 7E-05 1.5E-09 74.3 13.3 134 7-160 61-213 (287)
107 PRK14969 DNA polymerase III su 98.0 5.5E-05 1.2E-09 81.6 12.8 100 85-188 117-221 (527)
108 PRK07994 DNA polymerase III su 98.0 5E-05 1.1E-09 82.6 12.1 167 6-184 39-216 (647)
109 PRK08691 DNA polymerase III su 98.0 5.8E-05 1.3E-09 81.8 12.5 95 86-184 118-216 (709)
110 PRK07940 DNA polymerase III su 98.0 0.00011 2.3E-09 76.1 13.9 90 86-184 116-209 (394)
111 PF05496 RuvB_N: Holliday junc 98.0 3.7E-05 7.9E-10 71.2 9.3 149 4-186 49-219 (233)
112 COG0593 DnaA ATPase involved i 98.0 0.00015 3.2E-09 74.0 14.4 150 5-179 113-277 (408)
113 PRK14964 DNA polymerase III su 98.0 0.00011 2.4E-09 77.6 13.3 157 5-184 35-213 (491)
114 PRK05896 DNA polymerase III su 97.9 9E-05 1.9E-09 79.5 12.7 172 5-188 38-221 (605)
115 PRK14955 DNA polymerase III su 97.9 5.7E-05 1.2E-09 79.0 11.0 175 5-185 38-225 (397)
116 PF00004 AAA: ATPase family as 97.9 3.4E-05 7.4E-10 67.2 8.0 22 8-29 1-22 (132)
117 PRK14958 DNA polymerase III su 97.9 0.0001 2.3E-09 78.9 12.9 156 5-184 38-216 (509)
118 PRK14959 DNA polymerase III su 97.9 0.00013 2.8E-09 78.7 13.6 175 5-192 38-225 (624)
119 PRK07471 DNA polymerase III su 97.9 2.4E-05 5.2E-10 80.1 7.6 93 86-186 140-236 (365)
120 smart00382 AAA ATPases associa 97.9 5.1E-05 1.1E-09 66.9 8.8 90 5-101 2-92 (148)
121 PRK14951 DNA polymerase III su 97.9 0.00017 3.7E-09 78.4 14.0 172 5-185 38-222 (618)
122 KOG1909 Ran GTPase-activating 97.9 1.6E-06 3.5E-11 83.8 -1.3 243 339-616 26-309 (382)
123 PRK14970 DNA polymerase III su 97.9 0.0002 4.3E-09 74.6 14.1 156 5-183 39-204 (367)
124 PRK09111 DNA polymerase III su 97.9 0.00016 3.5E-09 78.7 13.6 173 5-186 46-231 (598)
125 PRK05707 DNA polymerase III su 97.9 0.00036 7.8E-09 70.5 14.9 92 86-185 105-200 (328)
126 PRK08451 DNA polymerase III su 97.8 0.00032 6.9E-09 74.8 14.7 98 86-187 116-217 (535)
127 PRK07764 DNA polymerase III su 97.8 0.00021 4.6E-09 80.5 13.6 96 85-184 118-217 (824)
128 KOG0531 Protein phosphatase 1, 97.8 4.1E-06 9E-11 88.5 -0.0 193 363-579 70-266 (414)
129 PRK03992 proteasome-activating 97.8 0.00028 6.2E-09 73.5 13.6 151 4-182 164-337 (389)
130 PRK14953 DNA polymerase III su 97.8 0.00042 9.1E-09 73.9 15.0 99 85-187 117-219 (486)
131 TIGR02903 spore_lon_C ATP-depe 97.8 0.00018 3.9E-09 79.2 12.6 110 76-189 281-396 (615)
132 PRK14971 DNA polymerase III su 97.8 0.00034 7.3E-09 76.8 14.5 155 5-183 39-217 (614)
133 PRK14952 DNA polymerase III su 97.8 0.00038 8.2E-09 75.4 14.4 102 86-191 117-223 (584)
134 PRK14954 DNA polymerase III su 97.8 0.00036 7.9E-09 76.1 14.0 174 5-183 38-223 (620)
135 PRK07133 DNA polymerase III su 97.8 0.0004 8.7E-09 76.2 14.2 100 85-188 116-220 (725)
136 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00031 6.7E-09 73.3 12.2 150 5-181 223-395 (802)
137 PRK08116 hypothetical protein; 97.7 6.5E-05 1.4E-09 73.7 7.2 103 6-126 115-221 (268)
138 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3E-11 91.7 -4.8 128 365-508 164-291 (1096)
139 PRK15386 type III secretion pr 97.7 3.3E-05 7.1E-10 78.6 4.7 74 385-471 48-123 (426)
140 PRK14950 DNA polymerase III su 97.7 0.00061 1.3E-08 75.0 14.9 173 5-188 38-221 (585)
141 KOG1909 Ran GTPase-activating 97.7 1.1E-05 2.3E-10 78.3 0.9 189 340-537 55-284 (382)
142 PRK06305 DNA polymerase III su 97.7 0.00049 1.1E-08 72.9 13.5 94 86-183 120-217 (451)
143 PF04665 Pox_A32: Poxvirus A32 97.7 0.00011 2.3E-09 69.8 7.6 35 7-44 15-49 (241)
144 PF13191 AAA_16: AAA ATPase do 97.7 9.4E-05 2E-09 68.8 6.9 27 3-29 22-48 (185)
145 TIGR03689 pup_AAA proteasome A 97.7 0.00036 7.7E-09 74.0 11.8 141 5-158 216-380 (512)
146 PTZ00361 26 proteosome regulat 97.7 0.00017 3.6E-09 75.3 9.2 151 5-182 217-389 (438)
147 PTZ00454 26S protease regulato 97.7 0.00069 1.5E-08 70.3 13.6 152 4-182 178-351 (398)
148 PHA02544 44 clamp loader, smal 97.7 0.00041 9E-09 70.6 11.9 124 5-154 43-171 (316)
149 PF12799 LRR_4: Leucine Rich r 97.6 4.8E-05 1E-09 51.3 3.1 40 389-429 1-40 (44)
150 PTZ00202 tuzin; Provisional 97.6 0.0023 4.9E-08 65.2 16.2 141 5-156 286-434 (550)
151 PRK14948 DNA polymerase III su 97.6 0.00091 2E-08 73.5 14.5 170 6-185 39-219 (620)
152 KOG2982 Uncharacterized conser 97.6 1.6E-05 3.6E-10 75.2 0.8 88 362-449 68-159 (418)
153 KOG0730 AAA+-type ATPase [Post 97.6 0.0018 3.9E-08 68.6 15.7 187 4-217 467-680 (693)
154 KOG4341 F-box protein containi 97.6 4.6E-06 1E-10 82.6 -3.0 256 362-641 187-464 (483)
155 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0018 3.9E-08 68.9 15.9 152 5-182 259-429 (489)
156 KOG1859 Leucine-rich repeat pr 97.6 2.3E-06 5.1E-11 90.1 -5.7 126 339-471 160-290 (1096)
157 KOG0989 Replication factor C, 97.6 0.00021 4.5E-09 68.5 7.7 160 4-181 56-223 (346)
158 KOG4579 Leucine-rich repeat (L 97.6 5.2E-06 1.1E-10 69.4 -2.7 110 344-454 28-141 (177)
159 PRK08118 topology modulation p 97.6 5.6E-05 1.2E-09 68.6 3.7 35 6-41 2-37 (167)
160 PRK06647 DNA polymerase III su 97.6 0.0012 2.5E-08 71.8 14.3 169 5-185 38-217 (563)
161 CHL00176 ftsH cell division pr 97.6 0.0012 2.5E-08 72.7 14.2 150 5-181 216-387 (638)
162 PRK12608 transcription termina 97.6 0.00041 8.9E-09 69.9 9.7 89 6-96 134-229 (380)
163 TIGR01241 FtsH_fam ATP-depende 97.5 0.0013 2.9E-08 71.1 14.1 151 5-182 88-260 (495)
164 PRK07261 topology modulation p 97.5 0.00023 5E-09 64.9 7.0 66 7-98 2-68 (171)
165 PLN00020 ribulose bisphosphate 97.5 0.0018 3.8E-08 64.7 13.4 154 4-183 147-333 (413)
166 PRK11331 5-methylcytosine-spec 97.5 0.00022 4.9E-09 73.5 7.3 88 5-98 194-283 (459)
167 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0013 2.8E-08 68.8 12.6 130 5-158 545-694 (802)
168 KOG3665 ZYG-1-like serine/thre 97.5 7.5E-05 1.6E-09 82.6 3.9 105 366-471 123-231 (699)
169 COG1373 Predicted ATPase (AAA+ 97.5 0.0022 4.7E-08 66.9 14.3 119 7-152 39-163 (398)
170 PRK15386 type III secretion pr 97.5 0.00018 4E-09 73.3 6.0 59 343-406 52-111 (426)
171 PRK14965 DNA polymerase III su 97.5 0.0013 2.8E-08 72.1 12.8 99 86-188 118-221 (576)
172 PF00448 SRP54: SRP54-type pro 97.4 0.00087 1.9E-08 62.4 9.8 57 5-64 1-58 (196)
173 cd01120 RecA-like_NTPases RecA 97.4 0.00077 1.7E-08 61.0 9.4 40 7-49 1-40 (165)
174 PRK08181 transposase; Validate 97.4 0.0003 6.5E-09 68.7 6.9 100 5-126 106-209 (269)
175 KOG0741 AAA+-type ATPase [Post 97.4 0.00057 1.2E-08 70.1 8.9 129 4-154 537-684 (744)
176 COG1222 RPT1 ATP-dependent 26S 97.4 0.0032 6.9E-08 61.9 13.4 151 4-182 184-357 (406)
177 KOG4341 F-box protein containi 97.4 6.9E-06 1.5E-10 81.4 -4.9 224 389-635 138-378 (483)
178 KOG3665 ZYG-1-like serine/thre 97.4 5E-05 1.1E-09 84.0 1.1 107 388-507 121-231 (699)
179 PRK06526 transposase; Provisio 97.4 0.00026 5.6E-09 68.8 5.7 25 5-29 98-122 (254)
180 TIGR00602 rad24 checkpoint pro 97.4 0.00067 1.5E-08 74.0 9.5 169 6-182 111-317 (637)
181 PRK12377 putative replication 97.4 0.00044 9.5E-09 66.7 7.2 37 5-44 101-137 (248)
182 PRK06921 hypothetical protein; 97.4 0.0006 1.3E-08 66.8 8.3 39 4-44 116-154 (266)
183 KOG0744 AAA+-type ATPase [Post 97.4 0.00098 2.1E-08 64.3 9.0 79 5-98 177-261 (423)
184 KOG1969 DNA replication checkp 97.4 0.00047 1E-08 73.5 7.5 74 5-99 326-399 (877)
185 PRK08769 DNA polymerase III su 97.3 0.0047 1E-07 61.9 14.1 90 86-185 112-205 (319)
186 PRK05563 DNA polymerase III su 97.3 0.0048 1E-07 67.3 15.3 167 5-183 38-215 (559)
187 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0018 4E-08 74.0 12.2 160 6-181 209-389 (852)
188 PRK06964 DNA polymerase III su 97.3 0.0061 1.3E-07 61.7 14.6 87 86-184 131-221 (342)
189 PRK04296 thymidine kinase; Pro 97.3 0.0002 4.4E-09 66.5 3.7 116 6-128 3-118 (190)
190 KOG0735 AAA+-type ATPase [Post 97.2 0.0033 7.3E-08 67.0 12.1 156 6-188 432-616 (952)
191 TIGR02237 recomb_radB DNA repa 97.2 0.0011 2.3E-08 63.0 8.0 45 5-53 12-56 (209)
192 PF07728 AAA_5: AAA domain (dy 97.2 0.00016 3.5E-09 63.6 2.1 41 8-54 2-42 (139)
193 PF13207 AAA_17: AAA domain; P 97.2 0.00023 5E-09 60.9 3.0 23 7-29 1-23 (121)
194 PRK06871 DNA polymerase III su 97.2 0.0075 1.6E-07 60.6 14.0 90 85-183 105-198 (325)
195 PRK06090 DNA polymerase III su 97.2 0.0076 1.7E-07 60.3 14.0 88 86-185 107-198 (319)
196 PRK10536 hypothetical protein; 97.2 0.0017 3.6E-08 62.1 8.8 35 6-41 75-109 (262)
197 PRK08058 DNA polymerase III su 97.2 0.0047 1E-07 62.9 12.7 68 86-154 109-180 (329)
198 KOG1644 U2-associated snRNP A' 97.2 0.00061 1.3E-08 61.3 5.3 56 344-399 43-98 (233)
199 PRK06835 DNA replication prote 97.2 0.00072 1.6E-08 68.2 6.6 37 5-44 183-219 (329)
200 PRK04132 replication factor C 97.2 0.0055 1.2E-07 69.0 14.1 151 11-184 570-727 (846)
201 KOG0736 Peroxisome assembly fa 97.2 0.0063 1.4E-07 65.6 13.5 149 7-181 707-878 (953)
202 PRK07399 DNA polymerase III su 97.2 0.013 2.8E-07 59.0 15.3 175 5-187 26-220 (314)
203 PF05673 DUF815: Protein of un 97.2 0.012 2.6E-07 55.6 13.9 97 5-129 52-154 (249)
204 PRK09183 transposase/IS protei 97.2 0.00048 1E-08 67.3 4.9 24 6-29 103-126 (259)
205 TIGR01243 CDC48 AAA family ATP 97.2 0.0083 1.8E-07 68.3 15.6 151 5-182 487-657 (733)
206 cd01393 recA_like RecA is a b 97.2 0.0021 4.6E-08 61.8 9.4 90 6-97 20-124 (226)
207 KOG1644 U2-associated snRNP A' 97.2 0.00037 8.1E-09 62.7 3.7 104 366-471 43-151 (233)
208 KOG4579 Leucine-rich repeat (L 97.1 8.8E-05 1.9E-09 62.2 -0.4 87 343-431 53-141 (177)
209 TIGR01243 CDC48 AAA family ATP 97.1 0.0047 1E-07 70.3 13.3 152 5-183 212-382 (733)
210 PF10443 RNA12: RNA12 protein; 97.1 0.013 2.8E-07 59.9 14.7 110 87-198 148-288 (431)
211 PF01695 IstB_IS21: IstB-like 97.1 0.00032 7E-09 64.3 3.2 37 5-44 47-83 (178)
212 PRK07952 DNA replication prote 97.1 0.0014 3E-08 63.1 7.4 37 5-44 99-135 (244)
213 KOG2543 Origin recognition com 97.1 0.0018 3.8E-08 64.2 8.1 145 5-155 30-192 (438)
214 COG2255 RuvB Holliday junction 97.1 0.017 3.8E-07 55.1 14.2 45 137-184 175-219 (332)
215 PF08423 Rad51: Rad51; InterP 97.1 0.0019 4.1E-08 63.0 8.2 55 6-62 39-97 (256)
216 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0028 6E-08 61.4 9.4 47 6-53 20-70 (235)
217 KOG0991 Replication factor C, 97.1 0.00091 2E-08 61.4 5.4 84 2-102 45-128 (333)
218 PRK11889 flhF flagellar biosyn 97.1 0.0064 1.4E-07 61.7 11.7 90 3-97 239-330 (436)
219 TIGR02640 gas_vesic_GvpN gas v 97.0 0.008 1.7E-07 59.1 12.3 23 7-29 23-45 (262)
220 PRK09361 radB DNA repair and r 97.0 0.0021 4.6E-08 61.8 8.1 37 6-45 24-60 (225)
221 PRK08699 DNA polymerase III su 97.0 0.0075 1.6E-07 60.9 12.2 68 86-154 112-183 (325)
222 TIGR02012 tigrfam_recA protein 97.0 0.0018 4E-08 64.5 7.6 84 6-97 56-143 (321)
223 KOG2982 Uncharacterized conser 97.0 0.00038 8.2E-09 66.2 2.5 83 343-425 71-158 (418)
224 cd00983 recA RecA is a bacter 97.0 0.002 4.3E-08 64.4 7.4 84 6-97 56-143 (325)
225 PRK07993 DNA polymerase III su 97.0 0.012 2.6E-07 59.7 13.1 90 85-183 106-199 (334)
226 cd01394 radB RadB. The archaea 97.0 0.003 6.5E-08 60.4 8.4 41 5-48 19-59 (218)
227 TIGR02639 ClpA ATP-dependent C 97.0 0.004 8.7E-08 70.7 10.7 132 7-157 205-359 (731)
228 PF13177 DNA_pol3_delta2: DNA 96.9 0.009 2E-07 53.9 10.6 25 5-29 19-43 (162)
229 cd03247 ABCC_cytochrome_bd The 96.9 0.0052 1.1E-07 56.6 9.3 125 6-140 29-169 (178)
230 PRK09354 recA recombinase A; P 96.9 0.0027 5.9E-08 63.9 7.7 84 6-97 61-148 (349)
231 PF02562 PhoH: PhoH-like prote 96.9 0.002 4.2E-08 59.9 6.2 38 5-43 19-56 (205)
232 TIGR02238 recomb_DMC1 meiotic 96.9 0.0037 8.1E-08 62.7 8.6 56 6-63 97-156 (313)
233 cd03238 ABC_UvrA The excision 96.9 0.0063 1.4E-07 55.6 9.3 123 6-140 22-161 (176)
234 KOG2227 Pre-initiation complex 96.9 0.048 1.1E-06 55.8 16.1 166 5-181 175-361 (529)
235 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0018 3.8E-08 59.4 5.6 118 6-130 27-159 (173)
236 COG1223 Predicted ATPase (AAA+ 96.9 0.024 5.2E-07 53.3 12.7 152 4-182 150-319 (368)
237 PRK08939 primosomal protein Dn 96.9 0.0033 7.2E-08 62.9 7.9 101 5-126 156-261 (306)
238 cd03246 ABCC_Protease_Secretio 96.9 0.0038 8.2E-08 57.2 7.7 125 6-140 29-168 (173)
239 TIGR00064 ftsY signal recognit 96.9 0.0067 1.4E-07 59.7 9.9 92 3-97 70-164 (272)
240 COG0466 Lon ATP-dependent Lon 96.9 0.0076 1.6E-07 64.8 10.7 134 6-156 351-508 (782)
241 TIGR00763 lon ATP-dependent pr 96.9 0.035 7.7E-07 63.5 17.1 25 5-29 347-371 (775)
242 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0041 8.9E-08 55.2 7.5 117 6-127 3-139 (159)
243 cd03216 ABC_Carb_Monos_I This 96.8 0.0019 4.2E-08 58.4 5.6 114 6-129 27-145 (163)
244 cd03223 ABCD_peroxisomal_ALDP 96.8 0.006 1.3E-07 55.4 8.8 116 6-129 28-151 (166)
245 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0036 7.9E-08 57.2 7.0 107 6-130 26-136 (177)
246 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0045 9.8E-08 57.3 7.8 23 7-29 1-23 (183)
247 cd03214 ABC_Iron-Siderophores_ 96.8 0.0073 1.6E-07 55.7 9.0 119 6-129 26-161 (180)
248 cd03229 ABC_Class3 This class 96.8 0.0026 5.6E-08 58.6 5.9 24 6-29 27-50 (178)
249 TIGR03499 FlhF flagellar biosy 96.8 0.0062 1.3E-07 60.5 9.0 88 4-96 193-281 (282)
250 PRK14722 flhF flagellar biosyn 96.8 0.0087 1.9E-07 61.1 10.1 88 5-97 137-225 (374)
251 PRK10867 signal recognition pa 96.8 0.0058 1.2E-07 63.9 9.0 26 4-29 99-124 (433)
252 COG4608 AppF ABC-type oligopep 96.8 0.0086 1.9E-07 57.2 9.3 121 6-132 40-176 (268)
253 PRK12724 flagellar biosynthesi 96.8 0.014 3E-07 60.1 11.4 57 5-63 223-280 (432)
254 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0058 1.2E-07 54.0 7.7 101 6-129 27-130 (144)
255 KOG0734 AAA+-type ATPase conta 96.7 0.011 2.4E-07 61.1 10.3 25 5-29 337-361 (752)
256 COG1484 DnaC DNA replication p 96.7 0.0041 8.9E-08 60.5 7.1 74 5-98 105-178 (254)
257 COG2884 FtsE Predicted ATPase 96.7 0.013 2.7E-07 52.6 9.4 122 6-132 29-203 (223)
258 PRK10733 hflB ATP-dependent me 96.7 0.026 5.7E-07 62.9 14.2 149 6-181 186-356 (644)
259 PRK06067 flagellar accessory p 96.7 0.0055 1.2E-07 59.3 7.9 87 5-97 25-130 (234)
260 PLN03187 meiotic recombination 96.7 0.0069 1.5E-07 61.3 8.7 56 6-63 127-186 (344)
261 COG0572 Udk Uridine kinase [Nu 96.7 0.0047 1E-07 57.3 6.8 79 4-88 7-85 (218)
262 PRK14721 flhF flagellar biosyn 96.7 0.016 3.4E-07 60.2 11.5 26 4-29 190-215 (420)
263 cd03228 ABCC_MRP_Like The MRP 96.7 0.011 2.4E-07 53.9 9.4 124 6-140 29-167 (171)
264 PRK13539 cytochrome c biogenes 96.7 0.0092 2E-07 56.5 9.1 63 80-145 138-203 (207)
265 TIGR00959 ffh signal recogniti 96.7 0.0074 1.6E-07 63.0 9.0 26 4-29 98-123 (428)
266 COG1618 Predicted nucleotide k 96.7 0.0026 5.6E-08 55.2 4.5 27 3-29 3-29 (179)
267 cd01121 Sms Sms (bacterial rad 96.6 0.005 1.1E-07 63.3 7.5 83 6-97 83-168 (372)
268 cd03115 SRP The signal recogni 96.6 0.013 2.8E-07 53.7 9.6 89 7-98 2-93 (173)
269 KOG0735 AAA+-type ATPase [Post 96.6 0.034 7.4E-07 59.7 13.5 149 7-182 703-870 (952)
270 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0099 2.1E-07 57.7 9.0 88 6-96 70-172 (274)
271 PRK05480 uridine/cytidine kina 96.6 0.0019 4E-08 61.4 4.0 29 1-29 2-30 (209)
272 COG1066 Sms Predicted ATP-depe 96.6 0.0066 1.4E-07 61.0 7.8 83 6-98 94-179 (456)
273 COG0464 SpoVK ATPases of the A 96.6 0.017 3.8E-07 62.7 11.9 152 4-180 275-445 (494)
274 PRK14974 cell division protein 96.6 0.014 3.1E-07 58.9 10.3 92 4-98 139-233 (336)
275 PRK04301 radA DNA repair and r 96.6 0.011 2.3E-07 60.1 9.6 55 5-61 102-160 (317)
276 KOG2739 Leucine-rich acidic nu 96.6 0.00087 1.9E-08 63.0 1.5 61 386-446 62-126 (260)
277 PF03215 Rad17: Rad17 cell cyc 96.6 0.015 3.3E-07 62.3 11.1 34 5-43 45-78 (519)
278 cd01131 PilT Pilus retraction 96.6 0.0022 4.7E-08 60.1 4.2 90 6-105 2-92 (198)
279 PF00485 PRK: Phosphoribulokin 96.6 0.014 3E-07 54.6 9.6 81 7-89 1-85 (194)
280 PRK00771 signal recognition pa 96.6 0.0081 1.8E-07 62.9 8.7 89 4-96 94-184 (437)
281 PRK05541 adenylylsulfate kinas 96.6 0.0025 5.5E-08 58.6 4.5 39 2-43 4-42 (176)
282 COG0194 Gmk Guanylate kinase [ 96.6 0.0056 1.2E-07 54.9 6.3 25 5-29 4-28 (191)
283 COG1102 Cmk Cytidylate kinase 96.6 0.0035 7.5E-08 54.5 4.8 23 7-29 2-24 (179)
284 PRK11034 clpA ATP-dependent Cl 96.6 0.014 2.9E-07 65.8 10.8 134 7-157 209-363 (758)
285 TIGR02639 ClpA ATP-dependent C 96.6 0.01 2.2E-07 67.4 10.1 81 6-99 485-565 (731)
286 COG2812 DnaX DNA polymerase II 96.6 0.0096 2.1E-07 63.0 9.0 163 8-182 41-214 (515)
287 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0084 1.8E-07 60.4 8.3 56 5-62 96-155 (316)
288 COG4618 ArpD ABC-type protease 96.6 0.0042 9.1E-08 64.0 6.1 24 6-29 363-386 (580)
289 PRK13695 putative NTPase; Prov 96.5 0.0031 6.8E-08 57.8 4.7 34 7-42 2-35 (174)
290 TIGR03346 chaperone_ClpB ATP-d 96.5 0.012 2.5E-07 68.0 10.3 40 5-47 595-634 (852)
291 COG0470 HolB ATPase involved i 96.5 0.01 2.2E-07 60.7 8.9 25 5-29 24-48 (325)
292 PF13238 AAA_18: AAA domain; P 96.5 0.0018 3.9E-08 55.9 2.9 22 8-29 1-22 (129)
293 PRK06995 flhF flagellar biosyn 96.5 0.02 4.3E-07 60.5 10.9 58 5-63 256-314 (484)
294 cd02019 NK Nucleoside/nucleoti 96.5 0.002 4.4E-08 48.6 2.7 23 7-29 1-23 (69)
295 PF07693 KAP_NTPase: KAP famil 96.5 0.066 1.4E-06 54.7 14.7 27 3-29 18-44 (325)
296 TIGR03346 chaperone_ClpB ATP-d 96.5 0.027 5.8E-07 65.1 12.9 137 6-158 195-351 (852)
297 PF00006 ATP-synt_ab: ATP synt 96.5 0.016 3.5E-07 54.5 9.1 84 6-96 16-114 (215)
298 PF07724 AAA_2: AAA domain (Cd 96.5 0.0019 4.1E-08 58.7 2.7 42 5-49 3-45 (171)
299 TIGR01069 mutS2 MutS2 family p 96.4 0.012 2.6E-07 66.5 9.6 186 3-211 320-523 (771)
300 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0097 2.1E-07 68.2 8.9 25 5-29 596-620 (852)
301 PRK10865 protein disaggregatio 96.4 0.013 2.7E-07 67.5 9.7 38 6-46 599-636 (857)
302 PRK12723 flagellar biosynthesi 96.4 0.014 3E-07 60.2 9.1 89 4-97 173-264 (388)
303 PLN03186 DNA repair protein RA 96.4 0.014 3E-07 59.2 8.9 57 5-63 123-183 (342)
304 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.005 1.1E-07 55.4 5.2 115 6-131 26-145 (157)
305 KOG2123 Uncharacterized conser 96.4 0.00019 4.1E-09 67.6 -4.1 102 362-467 16-124 (388)
306 PRK08533 flagellar accessory p 96.4 0.012 2.6E-07 56.5 8.0 38 6-46 25-62 (230)
307 COG3910 Predicted ATPase [Gene 96.4 0.025 5.3E-07 50.6 9.1 27 2-28 34-60 (233)
308 PF13481 AAA_25: AAA domain; P 96.4 0.014 2.9E-07 54.6 8.3 43 6-48 33-82 (193)
309 PRK08233 hypothetical protein; 96.4 0.0028 6.1E-08 58.6 3.6 25 5-29 3-27 (182)
310 KOG2004 Mitochondrial ATP-depe 96.4 0.019 4.1E-07 61.6 9.8 136 5-156 438-596 (906)
311 KOG0737 AAA+-type ATPase [Post 96.4 0.021 4.7E-07 56.6 9.5 29 5-36 127-155 (386)
312 PRK15453 phosphoribulokinase; 96.4 0.017 3.7E-07 56.0 8.7 82 1-85 1-88 (290)
313 CHL00095 clpC Clp protease ATP 96.4 0.012 2.6E-07 67.8 9.1 132 7-155 202-353 (821)
314 TIGR02236 recomb_radA DNA repa 96.4 0.017 3.7E-07 58.4 9.3 55 5-61 95-153 (310)
315 KOG2739 Leucine-rich acidic nu 96.4 0.0019 4E-08 60.9 2.0 84 385-472 39-128 (260)
316 KOG0731 AAA+-type ATPase conta 96.3 0.049 1.1E-06 59.9 12.8 153 5-184 344-520 (774)
317 COG1875 NYN ribonuclease and A 96.3 0.0057 1.2E-07 60.3 5.2 28 1-28 241-268 (436)
318 PRK06762 hypothetical protein; 96.3 0.0033 7.1E-08 57.2 3.4 25 5-29 2-26 (166)
319 KOG0738 AAA+-type ATPase [Post 96.3 0.026 5.7E-07 56.2 9.6 24 6-29 246-269 (491)
320 CHL00095 clpC Clp protease ATP 96.3 0.017 3.7E-07 66.5 9.9 24 6-29 540-563 (821)
321 cd01125 repA Hexameric Replica 96.3 0.028 6E-07 54.5 10.0 55 7-61 3-67 (239)
322 KOG0743 AAA+-type ATPase [Post 96.3 0.15 3.2E-06 52.4 15.2 148 8-194 238-416 (457)
323 cd03215 ABC_Carb_Monos_II This 96.3 0.027 5.8E-07 52.0 9.4 24 6-29 27-50 (182)
324 PRK05703 flhF flagellar biosyn 96.3 0.042 9.1E-07 57.8 11.9 87 5-96 221-308 (424)
325 PF00406 ADK: Adenylate kinase 96.3 0.008 1.7E-07 53.6 5.7 20 10-29 1-20 (151)
326 PRK10865 protein disaggregatio 96.3 0.035 7.6E-07 63.9 12.2 131 7-156 201-354 (857)
327 KOG0728 26S proteasome regulat 96.3 0.08 1.7E-06 49.4 12.0 131 3-158 179-333 (404)
328 PF00154 RecA: recA bacterial 96.3 0.012 2.5E-07 58.7 7.1 85 6-98 54-142 (322)
329 PF13671 AAA_33: AAA domain; P 96.3 0.0034 7.4E-08 55.4 3.1 23 7-29 1-23 (143)
330 cd01122 GP4d_helicase GP4d_hel 96.2 0.03 6.5E-07 55.5 10.2 40 6-47 31-70 (271)
331 PRK12726 flagellar biosynthesi 96.2 0.02 4.3E-07 58.0 8.8 90 4-98 205-296 (407)
332 KOG3347 Predicted nucleotide k 96.2 0.0073 1.6E-07 51.6 4.8 69 5-86 7-75 (176)
333 COG0468 RecA RecA/RadA recombi 96.2 0.026 5.5E-07 55.2 9.2 86 6-96 61-150 (279)
334 PTZ00088 adenylate kinase 1; P 96.2 0.019 4E-07 54.9 8.2 23 7-29 8-30 (229)
335 PRK10416 signal recognition pa 96.2 0.028 6.1E-07 56.6 9.9 91 4-98 113-207 (318)
336 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0039 8.4E-08 58.0 3.5 26 4-29 2-27 (188)
337 PRK14527 adenylate kinase; Pro 96.2 0.0077 1.7E-07 56.2 5.3 26 4-29 5-30 (191)
338 COG1428 Deoxynucleoside kinase 96.2 0.0043 9.4E-08 56.7 3.4 26 4-29 3-28 (216)
339 PRK06547 hypothetical protein; 96.2 0.0048 1E-07 56.1 3.8 27 3-29 13-39 (172)
340 PRK10787 DNA-binding ATP-depen 96.2 0.025 5.3E-07 64.2 10.2 137 5-156 349-506 (784)
341 PRK13538 cytochrome c biogenes 96.2 0.031 6.8E-07 52.7 9.5 24 6-29 28-51 (204)
342 COG0563 Adk Adenylate kinase a 96.2 0.0087 1.9E-07 54.7 5.4 23 7-29 2-24 (178)
343 PRK11823 DNA repair protein Ra 96.2 0.011 2.4E-07 62.6 7.1 40 6-48 81-120 (446)
344 PRK13543 cytochrome c biogenes 96.2 0.031 6.6E-07 53.2 9.4 24 6-29 38-61 (214)
345 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.019 4.2E-07 55.5 8.1 40 5-47 21-60 (237)
346 PF00910 RNA_helicase: RNA hel 96.2 0.0032 6.9E-08 52.4 2.3 22 8-29 1-22 (107)
347 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.022 4.8E-07 54.4 8.2 22 6-27 31-52 (254)
348 cd02025 PanK Pantothenate kina 96.2 0.021 4.5E-07 54.4 8.1 40 7-47 1-40 (220)
349 cd03217 ABC_FeS_Assembly ABC-t 96.2 0.025 5.3E-07 53.2 8.6 23 6-28 27-49 (200)
350 TIGR00708 cobA cob(I)alamin ad 96.1 0.022 4.7E-07 51.3 7.6 121 4-127 4-141 (173)
351 TIGR01425 SRP54_euk signal rec 96.1 0.023 5E-07 59.1 8.9 26 4-29 99-124 (429)
352 PRK04328 hypothetical protein; 96.1 0.018 3.9E-07 56.1 7.8 41 5-48 23-63 (249)
353 PTZ00301 uridine kinase; Provi 96.1 0.0046 9.9E-08 58.2 3.4 25 5-29 3-27 (210)
354 COG1136 SalX ABC-type antimicr 96.1 0.046 9.9E-07 51.4 10.0 66 74-141 147-216 (226)
355 PRK06696 uridine kinase; Valid 96.1 0.005 1.1E-07 59.0 3.8 27 3-29 20-46 (223)
356 PHA00729 NTP-binding motif con 96.1 0.0051 1.1E-07 57.8 3.6 27 3-29 15-41 (226)
357 KOG0739 AAA+-type ATPase [Post 96.1 0.078 1.7E-06 51.0 11.3 150 5-182 166-335 (439)
358 KOG1514 Origin recognition com 96.1 0.15 3.3E-06 54.9 14.8 144 5-158 422-591 (767)
359 PRK12727 flagellar biosynthesi 96.1 0.02 4.4E-07 60.6 8.3 88 5-97 350-438 (559)
360 TIGR02858 spore_III_AA stage I 96.1 0.038 8.2E-07 54.1 9.8 114 5-128 111-231 (270)
361 COG3640 CooC CO dehydrogenase 96.1 0.0079 1.7E-07 55.8 4.7 42 7-50 2-43 (255)
362 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.036 7.7E-07 53.2 9.5 24 6-29 49-72 (224)
363 PF10236 DAP3: Mitochondrial r 96.1 0.18 3.9E-06 50.8 14.8 48 137-184 258-305 (309)
364 PF01583 APS_kinase: Adenylyls 96.1 0.0066 1.4E-07 53.6 3.9 36 5-43 2-37 (156)
365 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.012 2.6E-07 57.6 6.2 40 6-48 37-76 (259)
366 cd00046 DEXDc DEAD-like helica 96.1 0.027 5.8E-07 49.1 8.0 36 7-43 2-37 (144)
367 cd02028 UMPK_like Uridine mono 96.1 0.011 2.3E-07 54.4 5.5 23 7-29 1-23 (179)
368 PRK14723 flhF flagellar biosyn 96.0 0.043 9.2E-07 61.1 10.9 88 5-97 185-273 (767)
369 cd03244 ABCC_MRP_domain2 Domai 96.0 0.05 1.1E-06 52.0 10.3 24 6-29 31-54 (221)
370 COG1126 GlnQ ABC-type polar am 96.0 0.044 9.5E-07 50.4 9.0 124 6-133 29-203 (240)
371 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.058 1.2E-06 51.0 10.6 24 6-29 35-58 (207)
372 PRK04040 adenylate kinase; Pro 96.0 0.0055 1.2E-07 56.7 3.3 25 5-29 2-26 (188)
373 PRK06002 fliI flagellum-specif 96.0 0.015 3.2E-07 60.6 6.8 87 6-96 166-263 (450)
374 COG0396 sufC Cysteine desulfur 96.0 0.045 9.8E-07 50.8 9.1 62 79-140 154-218 (251)
375 TIGR00235 udk uridine kinase. 96.0 0.0064 1.4E-07 57.5 3.8 26 4-29 5-30 (207)
376 KOG2228 Origin recognition com 96.0 0.059 1.3E-06 52.8 10.1 148 5-157 49-220 (408)
377 PF12775 AAA_7: P-loop contain 96.0 0.0092 2E-07 58.7 4.9 78 6-98 34-111 (272)
378 PRK07132 DNA polymerase III su 96.0 0.2 4.2E-06 50.0 14.2 155 5-187 18-184 (299)
379 PRK03839 putative kinase; Prov 96.0 0.0055 1.2E-07 56.6 3.1 23 7-29 2-24 (180)
380 TIGR01351 adk adenylate kinase 96.0 0.021 4.6E-07 54.1 7.1 22 8-29 2-23 (210)
381 PTZ00035 Rad51 protein; Provis 95.9 0.042 9.2E-07 55.9 9.7 55 6-62 119-177 (337)
382 COG0542 clpA ATP-binding subun 95.9 0.023 4.9E-07 62.9 8.2 83 5-98 521-604 (786)
383 PF07726 AAA_3: ATPase family 95.9 0.0041 8.8E-08 52.4 1.9 29 8-39 2-30 (131)
384 PRK00409 recombination and DNA 95.9 0.032 6.9E-07 63.4 9.6 187 2-211 324-528 (782)
385 PRK07667 uridine kinase; Provi 95.9 0.0076 1.6E-07 56.2 4.0 27 3-29 15-41 (193)
386 PRK00131 aroK shikimate kinase 95.9 0.0063 1.4E-07 55.8 3.4 26 4-29 3-28 (175)
387 PF00625 Guanylate_kin: Guanyl 95.9 0.011 2.4E-07 54.7 5.0 37 5-44 2-38 (183)
388 PF13604 AAA_30: AAA domain; P 95.9 0.021 4.6E-07 53.3 6.8 26 4-29 17-42 (196)
389 cd01135 V_A-ATPase_B V/A-type 95.9 0.031 6.7E-07 54.2 8.0 90 6-96 70-175 (276)
390 cd03213 ABCG_EPDR ABCG transpo 95.9 0.026 5.6E-07 52.7 7.4 24 6-29 36-59 (194)
391 COG1936 Predicted nucleotide k 95.9 0.0063 1.4E-07 53.7 2.9 20 7-26 2-21 (180)
392 COG3598 RepA RecA-family ATPas 95.9 0.025 5.5E-07 54.9 7.1 90 7-96 91-203 (402)
393 COG1124 DppF ABC-type dipeptid 95.9 0.011 2.4E-07 55.3 4.5 24 6-29 34-57 (252)
394 PRK08972 fliI flagellum-specif 95.9 0.021 4.6E-07 59.2 7.0 86 6-96 163-261 (444)
395 KOG2123 Uncharacterized conser 95.8 0.00048 1E-08 64.9 -4.4 100 341-442 17-123 (388)
396 TIGR00554 panK_bact pantothena 95.8 0.034 7.4E-07 54.9 8.2 27 3-29 60-86 (290)
397 PRK05800 cobU adenosylcobinami 95.8 0.034 7.3E-07 50.5 7.6 23 7-29 3-25 (170)
398 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.034 7.4E-07 53.5 8.2 40 6-48 21-60 (229)
399 PRK05439 pantothenate kinase; 95.8 0.036 7.9E-07 55.2 8.4 27 3-29 84-110 (311)
400 TIGR00416 sms DNA repair prote 95.8 0.019 4.2E-07 60.8 6.9 39 6-47 95-133 (454)
401 PF08433 KTI12: Chromatin asso 95.8 0.012 2.6E-07 57.6 4.9 24 6-29 2-25 (270)
402 PRK09544 znuC high-affinity zi 95.8 0.048 1E-06 53.3 9.2 24 6-29 31-54 (251)
403 PRK12678 transcription termina 95.8 0.031 6.7E-07 59.3 8.1 88 7-96 418-512 (672)
404 cd03232 ABC_PDR_domain2 The pl 95.8 0.023 4.9E-07 53.1 6.6 23 6-28 34-56 (192)
405 PRK12597 F0F1 ATP synthase sub 95.8 0.02 4.3E-07 60.1 6.8 89 6-96 144-246 (461)
406 TIGR03498 FliI_clade3 flagella 95.8 0.05 1.1E-06 56.6 9.6 87 6-96 141-239 (418)
407 PRK06217 hypothetical protein; 95.8 0.015 3.3E-07 53.7 5.4 24 6-29 2-25 (183)
408 KOG0651 26S proteasome regulat 95.8 0.015 3.3E-07 56.0 5.3 26 4-29 165-190 (388)
409 PF02374 ArsA_ATPase: Anion-tr 95.8 0.01 2.2E-07 59.4 4.5 46 6-54 2-47 (305)
410 PRK00279 adk adenylate kinase; 95.8 0.031 6.8E-07 53.2 7.6 23 7-29 2-24 (215)
411 PRK14737 gmk guanylate kinase; 95.8 0.0099 2.1E-07 54.9 3.9 27 3-29 2-28 (186)
412 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.015 3.3E-07 59.5 5.6 107 4-128 61-169 (362)
413 PF03205 MobB: Molybdopterin g 95.8 0.01 2.2E-07 52.0 3.7 39 6-46 1-39 (140)
414 PF13245 AAA_19: Part of AAA d 95.8 0.027 5.9E-07 43.2 5.7 41 4-44 9-50 (76)
415 KOG1947 Leucine rich repeat pr 95.7 0.0043 9.3E-08 67.3 1.7 109 363-471 186-306 (482)
416 COG1419 FlhF Flagellar GTP-bin 95.7 0.11 2.3E-06 52.9 11.3 60 4-64 202-262 (407)
417 PRK05986 cob(I)alamin adenolsy 95.7 0.035 7.6E-07 50.7 7.2 118 5-127 22-159 (191)
418 PRK00300 gmk guanylate kinase; 95.7 0.0095 2.1E-07 56.3 3.8 29 1-29 1-29 (205)
419 cd02023 UMPK Uridine monophosp 95.7 0.0069 1.5E-07 56.9 2.8 23 7-29 1-23 (198)
420 cd03231 ABC_CcmA_heme_exporter 95.7 0.059 1.3E-06 50.7 9.1 24 6-29 27-50 (201)
421 PRK00625 shikimate kinase; Pro 95.7 0.0079 1.7E-07 54.7 3.0 23 7-29 2-24 (173)
422 TIGR03771 anch_rpt_ABC anchore 95.7 0.069 1.5E-06 51.1 9.6 24 6-29 7-30 (223)
423 PRK11034 clpA ATP-dependent Cl 95.7 0.038 8.2E-07 62.3 8.7 25 5-29 488-512 (758)
424 TIGR02322 phosphon_PhnN phosph 95.7 0.0089 1.9E-07 55.1 3.3 24 6-29 2-25 (179)
425 cd02024 NRK1 Nicotinamide ribo 95.7 0.0073 1.6E-07 55.5 2.7 23 7-29 1-23 (187)
426 cd03250 ABCC_MRP_domain1 Domai 95.7 0.15 3.2E-06 48.1 11.7 24 6-29 32-55 (204)
427 cd03254 ABCC_Glucan_exporter_l 95.7 0.086 1.9E-06 50.7 10.2 24 6-29 30-53 (229)
428 PRK10875 recD exonuclease V su 95.6 0.042 9.1E-07 60.3 8.7 57 5-61 167-223 (615)
429 cd00071 GMPK Guanosine monopho 95.6 0.01 2.2E-07 51.9 3.2 23 7-29 1-23 (137)
430 PF13306 LRR_5: Leucine rich r 95.6 0.029 6.2E-07 48.4 6.0 103 362-469 9-112 (129)
431 COG0003 ArsA Predicted ATPase 95.6 0.017 3.6E-07 57.8 5.0 48 5-55 2-49 (322)
432 cd00227 CPT Chloramphenicol (C 95.6 0.0098 2.1E-07 54.6 3.2 24 6-29 3-26 (175)
433 PF06414 Zeta_toxin: Zeta toxi 95.6 0.014 3.1E-07 54.7 4.3 90 3-97 13-102 (199)
434 KOG1532 GTPase XAB1, interacts 95.6 0.067 1.4E-06 50.7 8.5 91 4-96 18-124 (366)
435 PRK10463 hydrogenase nickel in 95.6 0.044 9.5E-07 53.8 7.7 28 2-29 101-128 (290)
436 cd01124 KaiC KaiC is a circadi 95.6 0.012 2.7E-07 54.6 3.8 38 7-47 1-38 (187)
437 PRK08927 fliI flagellum-specif 95.6 0.067 1.5E-06 55.8 9.4 86 6-96 159-257 (442)
438 cd02020 CMPK Cytidine monophos 95.6 0.0086 1.9E-07 53.1 2.6 23 7-29 1-23 (147)
439 cd02029 PRK_like Phosphoribulo 95.6 0.052 1.1E-06 52.3 7.9 78 7-87 1-84 (277)
440 TIGR02173 cyt_kin_arch cytidyl 95.6 0.038 8.1E-07 50.4 6.9 23 7-29 2-24 (171)
441 PF14532 Sigma54_activ_2: Sigm 95.5 0.0087 1.9E-07 52.4 2.6 24 6-29 22-45 (138)
442 TIGR03575 selen_PSTK_euk L-ser 95.5 0.038 8.2E-07 55.8 7.4 22 8-29 2-23 (340)
443 cd02021 GntK Gluconate kinase 95.5 0.009 2E-07 53.2 2.7 23 7-29 1-23 (150)
444 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.011 2.4E-07 55.9 3.5 23 5-27 29-51 (213)
445 COG2019 AdkA Archaeal adenylat 95.5 0.014 3E-07 51.0 3.7 25 5-29 4-28 (189)
446 cd00544 CobU Adenosylcobinamid 95.5 0.068 1.5E-06 48.4 8.3 80 7-96 1-82 (169)
447 KOG0727 26S proteasome regulat 95.5 0.22 4.7E-06 46.7 11.4 26 4-29 188-213 (408)
448 PF03266 NTPase_1: NTPase; In 95.5 0.0099 2.1E-07 53.8 2.8 22 8-29 2-23 (168)
449 TIGR03263 guanyl_kin guanylate 95.5 0.011 2.4E-07 54.5 3.2 24 6-29 2-25 (180)
450 PRK09519 recA DNA recombinatio 95.5 0.043 9.3E-07 61.2 8.1 85 5-97 60-148 (790)
451 smart00763 AAA_PrkA PrkA AAA d 95.5 0.012 2.6E-07 59.3 3.6 27 3-29 76-102 (361)
452 PRK00889 adenylylsulfate kinas 95.5 0.014 3.1E-07 53.5 3.9 27 3-29 2-28 (175)
453 PRK13949 shikimate kinase; Pro 95.5 0.014 3.1E-07 53.0 3.8 24 6-29 2-25 (169)
454 PRK12339 2-phosphoglycerate ki 95.5 0.013 2.8E-07 54.5 3.6 26 4-29 2-27 (197)
455 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.081 1.8E-06 51.4 9.0 84 6-96 70-170 (274)
456 PRK14530 adenylate kinase; Pro 95.5 0.011 2.3E-07 56.4 3.1 23 7-29 5-27 (215)
457 cd01136 ATPase_flagellum-secre 95.4 0.085 1.8E-06 53.0 9.4 86 6-96 70-168 (326)
458 COG0467 RAD55 RecA-superfamily 95.4 0.017 3.7E-07 56.9 4.5 41 5-48 23-63 (260)
459 COG1120 FepC ABC-type cobalami 95.4 0.059 1.3E-06 51.8 7.9 24 6-29 29-52 (258)
460 PRK09580 sufC cysteine desulfu 95.4 0.11 2.5E-06 50.6 10.3 23 6-28 28-50 (248)
461 PRK14269 phosphate ABC transpo 95.4 0.21 4.6E-06 48.6 12.1 24 6-29 29-52 (246)
462 PRK14529 adenylate kinase; Pro 95.4 0.049 1.1E-06 51.6 7.2 81 8-97 3-86 (223)
463 PRK13546 teichoic acids export 95.4 0.11 2.5E-06 51.0 10.1 24 6-29 51-74 (264)
464 KOG0927 Predicted transporter 95.4 0.053 1.2E-06 56.6 7.9 33 6-38 102-134 (614)
465 PLN02459 probable adenylate ki 95.4 0.039 8.4E-07 53.3 6.5 23 7-29 31-53 (261)
466 PRK13948 shikimate kinase; Pro 95.4 0.016 3.5E-07 53.1 3.8 28 2-29 7-34 (182)
467 PF00560 LRR_1: Leucine Rich R 95.4 0.0056 1.2E-07 34.2 0.4 18 415-432 2-19 (22)
468 cd03236 ABC_RNaseL_inhibitor_d 95.4 0.097 2.1E-06 51.2 9.4 24 6-29 27-50 (255)
469 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.17 3.7E-06 61.0 12.7 25 5-29 1630-1654(2281)
470 PRK09099 type III secretion sy 95.3 0.078 1.7E-06 55.5 9.1 87 6-96 164-262 (441)
471 TIGR02868 CydC thiol reductant 95.3 0.043 9.2E-07 60.3 7.6 24 6-29 362-385 (529)
472 PRK08149 ATP synthase SpaL; Va 95.3 0.063 1.4E-06 55.9 8.3 86 6-96 152-250 (428)
473 COG1703 ArgK Putative periplas 95.3 0.016 3.5E-07 55.9 3.6 45 3-48 49-93 (323)
474 KOG2170 ATPase of the AAA+ sup 95.3 0.019 4.1E-07 55.3 4.1 86 4-108 109-201 (344)
475 PRK13236 nitrogenase reductase 95.3 0.02 4.3E-07 57.4 4.6 28 2-29 3-30 (296)
476 PRK07594 type III secretion sy 95.3 0.083 1.8E-06 55.1 9.2 48 6-58 156-204 (433)
477 PRK06793 fliI flagellum-specif 95.3 0.07 1.5E-06 55.6 8.6 88 6-97 157-256 (432)
478 COG5635 Predicted NTPase (NACH 95.3 0.014 3E-07 67.3 3.8 194 7-210 224-449 (824)
479 COG2274 SunT ABC-type bacterio 95.3 0.044 9.6E-07 61.1 7.6 24 6-29 500-523 (709)
480 PLN02200 adenylate kinase fami 95.3 0.015 3.3E-07 55.8 3.6 26 4-29 42-67 (234)
481 TIGR00150 HI0065_YjeE ATPase, 95.3 0.015 3.4E-07 49.8 3.2 25 5-29 22-46 (133)
482 TIGR03496 FliI_clade1 flagella 95.3 0.091 2E-06 54.7 9.4 86 6-96 138-236 (411)
483 cd00820 PEPCK_HprK Phosphoenol 95.3 0.017 3.6E-07 47.4 3.2 21 6-26 16-36 (107)
484 PRK10751 molybdopterin-guanine 95.3 0.032 6.9E-07 50.4 5.3 26 4-29 5-30 (173)
485 PRK09270 nucleoside triphospha 95.3 0.017 3.8E-07 55.5 3.9 27 3-29 31-57 (229)
486 COG4133 CcmA ABC-type transpor 95.3 0.12 2.6E-06 46.5 8.7 24 6-29 29-52 (209)
487 COG5238 RNA1 Ran GTPase-activa 95.2 0.079 1.7E-06 50.3 7.8 185 342-534 29-253 (388)
488 PRK05922 type III secretion sy 95.2 0.051 1.1E-06 56.6 7.3 24 6-29 158-181 (434)
489 PRK13947 shikimate kinase; Pro 95.2 0.014 3.1E-07 53.2 2.9 23 7-29 3-25 (171)
490 TIGR03522 GldA_ABC_ATP gliding 95.2 0.12 2.7E-06 51.9 9.9 24 6-29 29-52 (301)
491 TIGR01313 therm_gnt_kin carboh 95.2 0.013 2.7E-07 53.1 2.5 22 8-29 1-22 (163)
492 COG0465 HflB ATP-dependent Zn 95.2 0.29 6.2E-06 52.9 12.8 151 5-182 183-355 (596)
493 PRK03846 adenylylsulfate kinas 95.2 0.02 4.4E-07 53.7 3.9 27 3-29 22-48 (198)
494 PRK10078 ribose 1,5-bisphospho 95.2 0.016 3.5E-07 53.7 3.2 24 6-29 3-26 (186)
495 TIGR01420 pilT_fam pilus retra 95.2 0.029 6.2E-07 57.5 5.2 90 5-104 122-212 (343)
496 PLN02348 phosphoribulokinase 95.1 0.095 2.1E-06 53.5 8.7 27 3-29 47-73 (395)
497 COG0488 Uup ATPase components 95.1 0.061 1.3E-06 57.9 7.8 133 6-142 349-511 (530)
498 PRK05057 aroK shikimate kinase 95.1 0.019 4.1E-07 52.4 3.4 25 5-29 4-28 (172)
499 COG2607 Predicted ATPase (AAA+ 95.1 0.1 2.2E-06 48.8 7.9 93 6-126 86-183 (287)
500 cd01129 PulE-GspE PulE/GspE Th 95.1 0.042 9.2E-07 53.9 6.0 88 4-104 79-166 (264)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-73 Score=629.06 Aligned_cols=574 Identities=44% Similarity=0.726 Sum_probs=496.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
|+++..+|+|+||||+||||||+.++++...++.+||.++||.||+.++...++..|+..++.....+.....++.+..+
T Consensus 175 ~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i 254 (889)
T KOG4658|consen 175 MEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL 254 (889)
T ss_pred ccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHH
Confidence 45667999999999999999999999999339999999999999999999999999999998877777777778899999
Q ss_pred HHhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCC
Q 037310 81 FKVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRD 159 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~ 159 (656)
.+.|.++|++||+||||+..+|+.+..++|... +|++|++|||++.++.. +++...+++++|+++|||+||.+.++..
T Consensus 255 ~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~-~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 255 LNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRE-NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN 333 (889)
T ss_pred HHHhccCceEEEEecccccccHHhcCCCCCCcc-CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccc
Confidence 999999999999999999999999999999997 99999999999999988 7888899999999999999999999988
Q ss_pred CCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcC-cccCCchHHHHHHHHhcccccCCCCCc
Q 037310 160 TLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSS-AFKFSSLAKKLYSSLKLSYDFLPDDAS 238 (656)
Q Consensus 160 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~s~~~L~~~~~ 238 (656)
.....+...+.|++++++|+|+|+|+.++|+.|+.+.+..+|+++.+.+... ..+.++..+.+..++.+||+.|++ +.
T Consensus 334 ~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~l 412 (889)
T KOG4658|consen 334 TLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-EL 412 (889)
T ss_pred cccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HH
Confidence 6556666899999999999999999999999999988888999999999887 666667788999999999999996 99
Q ss_pred hhHHHhhccCCCCceechhHHHHHHHHhCccccCCC-ccHHHhHHHHHHHHHHcccccccc----cCcEEecHHHHHHHH
Q 037310 239 RFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDG-IRARNQGYSLICTLLHACLLEKEE----ENCVKMHDVIRDMAL 313 (656)
Q Consensus 239 k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~-~~~~~~~~~~l~~L~~~~Ll~~~~----~~~~~~h~li~~~~~ 313 (656)
|.||+|||.||+++.++.+.++.+|+|+||+.+.+. ..+.+.++.++.+|++++++..+. ..++.|||++|++|.
T Consensus 413 K~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al 492 (889)
T KOG4658|consen 413 KSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMAL 492 (889)
T ss_pred HHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHH
Confidence 999999999999999999999999999999998654 488999999999999999999964 368999999999999
Q ss_pred HHHccc-cccccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccC--CcccchhHHhcCCc
Q 037310 314 WIASTI-DEKEKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSND--LNEVNRDFFQFMAS 390 (656)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~ 390 (656)
+++.+. ..+++.+...+......|+...+..+|++++.++.+..++.-..+++|++|.+.+|. +..++..+|..|+.
T Consensus 493 ~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 493 WIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred HHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcc
Confidence 999866 334445555555666688888889999999999999999888888899999999995 78888888999999
Q ss_pred ccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeee
Q 037310 391 LRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYE 469 (656)
Q Consensus 391 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~ 469 (656)
|++|||++|.-...+|..|+.|.+||||+++++.+..+|.++.+|.+|.+|++..+ .+..+| +....|.+|++|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeec
Confidence 99999999988899999999999999999999999999999999999999999999 566664 4366799999999987
Q ss_pred cCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHh-----------------------hhcCcccccccCC
Q 037310 470 CGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRM-----------------------LLDSPRLQSLSTP 526 (656)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------------------l~~~~~~~~~ll~ 526 (656)
.. ...+.....++.+|++|+.+.........+.. ..........+ +
T Consensus 652 s~----------~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L-~ 720 (889)
T KOG4658|consen 652 SA----------LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL-E 720 (889)
T ss_pred cc----------cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc-c
Confidence 75 23566778888999999988887655411111 11112223345 8
Q ss_pred ceeecccccceEEEec------c-ccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhccc
Q 037310 527 SLCLKHCCQSELLVFN------Q-RRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVE 588 (656)
Q Consensus 527 ~L~l~~~~~~~~~~~~------~-~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 588 (656)
.|.+.+|.+.+....+ . .++++..+ +.+|.....+.|..-.|+|+.|.+..|..+++.....
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 8888888886522211 1 14577777 8888899999998889999999999999888876543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-55 Score=513.89 Aligned_cols=594 Identities=19% Similarity=0.241 Sum_probs=414.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe---CChh-----------h-HHHHHHHHHHHhCCCCCC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV---SKDL-----------Q-LKRIQDCIARKIGLFSRS 67 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~ 67 (656)
+++++|+|+||||+||||||+++|++. ...|++.+|+.. .... + ...++..++.++......
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~ 281 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI 281 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc
Confidence 568999999999999999999999987 678888887742 1110 0 123444444444221111
Q ss_pred CCcccHHHHHHHHHHhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCChhh
Q 037310 68 WNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLGYDD 147 (656)
Q Consensus 68 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~~~e 147 (656)
.... ...+++.+.++|+||||||||+..+++.+.......+ +|++||||||++.++..++..+.|+++.+++++
T Consensus 282 -~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~-~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~e 355 (1153)
T PLN03210 282 -KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFG-SGSRIIVITKDKHFLRAHGIDHIYEVCLPSNEL 355 (1153)
T ss_pred -ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCC-CCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHH
Confidence 1111 1346677899999999999999888888876544444 899999999999998877777899999999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHHHHHHHHh
Q 037310 148 SWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAKKLYSSLK 227 (656)
Q Consensus 148 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 227 (656)
|++||.++|++.. .++.++.+.+.+|++.|+|+|||++++|++|++ ++..+|+.++.+++... .+.+..++.
T Consensus 356 a~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~------~~~I~~~L~ 427 (1153)
T PLN03210 356 ALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGL------DGKIEKTLR 427 (1153)
T ss_pred HHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCc------cHHHHHHHH
Confidence 9999999999765 344567889999999999999999999999987 57899999999987643 348999999
Q ss_pred cccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccccccCcEEecHH
Q 037310 228 LSYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKEEENCVKMHDV 307 (656)
Q Consensus 228 ~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~h~l 307 (656)
+||+.|+++..|.||+++|+|+.+..++. +..|.+.+.... +..+..|++++|++.. .+.+.||++
T Consensus 428 ~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~-~~~~~MHdL 493 (1153)
T PLN03210 428 VSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDV----------NIGLKNLVDKSLIHVR-EDIVEMHSL 493 (1153)
T ss_pred HhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCc----------hhChHHHHhcCCEEEc-CCeEEhhhH
Confidence 99999987468999999999998876544 455666543322 2248899999999875 467999999
Q ss_pred HHHHHHHHHccc---cccccEEEEcCC---------C-------------CC----------------------------
Q 037310 308 IRDMALWIASTI---DEKEKFLVLAGV---------G-------------LQ---------------------------- 334 (656)
Q Consensus 308 i~~~~~~~~~~~---~~~~~~~~~~~~---------~-------------~~---------------------------- 334 (656)
+|++|++++.++ +.++.+++...+ + ..
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 999999998654 223333322100 0 00
Q ss_pred -----CCCC-CC-cccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCcc
Q 037310 335 -----NAPG-IG-LWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLT 407 (656)
Q Consensus 335 -----~~~~-~~-~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 407 (656)
.+|. .. ...+++.|.+.++.++.+|..-.+.+|+.|++.++.+..++.. +..+++|+.|++++++....+|
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip- 651 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP- 651 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-
Confidence 0000 00 1124566666666666666555677888888888887776544 5778899999998886677777
Q ss_pred ccCCcccCcEEeCCCC-CCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCCcCCCcc-----
Q 037310 408 GISNLVSLQHLDPARS-KIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI----- 480 (656)
Q Consensus 408 ~~~~L~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----- 480 (656)
.++.+++|++|++++| .+..+|..++++++|+.|++++| .++.+|.. + ++++|++|++++|..+...+...
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCe
Confidence 5888899999999887 56788888999999999999988 88888875 3 78899999999987543321100
Q ss_pred ---cccCccccHHHhhcCCCCcEEEEEecchhhhH----hhhc-CcccccccCCceeecccccce-EEEeccccccHHHH
Q 037310 481 ---LIGGREVLVVEILSLQHLNVLTVTLESFCALR----MLLD-SPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI 551 (656)
Q Consensus 481 ---~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l~~-~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L 551 (656)
........+..+ .+++|+.|.+..+....+. .+.. .......+ +.|++++|.... ++..+..+++|+.|
T Consensus 730 L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL-~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 730 LDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL-TRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred eecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccc-hheeCCCCCCccccChhhhCCCCCCEE
Confidence 000000011111 2344444444332111100 0000 01112345 778888876655 55566777788888
Q ss_pred -HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccc--------cCCcCcccccCcccccccccccccCCcchhhhc
Q 037310 552 -CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEK--------LGEVSPEVMHNLIPLARIEYLILEDLKNLKSIH 622 (656)
Q Consensus 552 -l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 622 (656)
+.+|..++.+|....+++|++|++++|..+..++.... ...+.. .|..+..+++|+.|.|.+|++++.++
T Consensus 808 ~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 808 EIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred ECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccC
Confidence 88888777776555788888888888877665543210 111222 36678889999999999999999988
Q ss_pred CCCCCCCChhHH
Q 037310 623 SSALPFPHLQSL 634 (656)
Q Consensus 623 ~~~~~~~~L~~L 634 (656)
.....+++|+.|
T Consensus 887 ~~~~~L~~L~~L 898 (1153)
T PLN03210 887 LNISKLKHLETV 898 (1153)
T ss_pred cccccccCCCee
Confidence 766555555443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.7e-41 Score=338.19 Aligned_cols=267 Identities=37% Similarity=0.653 Sum_probs=219.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC-CcccHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW-NSKSLLEKAEDIF 81 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 81 (656)
++.++|+|+|+||+||||||++++++. ..+.+|+.++|+.++...+..++...|+.++.....+. ...+.++....+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 95 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR 95 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 678999999999999999999999986 46889999999999998888999999999998875544 5678888999999
Q ss_pred HhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccCC-cceEeeccCChhhhHHHHHHHhcCCC
Q 037310 82 KVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEA-HKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~-~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
+.+.++++||||||||+...++.+...++... .+++||||||+..++..+.. ...+++++|+++||++||.+.++...
T Consensus 96 ~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~-~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 96 ELLKDKRCLLVLDDVWDEEDLEELREPLPSFS-SGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp HHHCCTSEEEEEEEE-SHHHH-------HCHH-SS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred hhhccccceeeeeeeccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999988888777766 78999999999998877654 67899999999999999999998655
Q ss_pred CCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHHHHHHHHhcccccCCCCCchh
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFLPDDASRF 240 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~ 240 (656)
....+..++.+++|++.|+|+|+||.++|++|+.+.+..+|+..++.+.....+..+...++..++.+||+.|++ +.|.
T Consensus 175 ~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~ 253 (287)
T PF00931_consen 175 SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRR 253 (287)
T ss_dssp ----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHH
Confidence 223344566799999999999999999999996655778999999888887665555567999999999999999 8999
Q ss_pred HHHhhccCCCCceechhHHHHHHHHhCccccC
Q 037310 241 CLLYCSLFPEDYRISIEDLIDCWICEGLLDEY 272 (656)
Q Consensus 241 ~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~ 272 (656)
||++|++||+++.++.+.++++|.++|++...
T Consensus 254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 254 CFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred HHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999988764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2.6e-19 Score=210.59 Aligned_cols=278 Identities=22% Similarity=0.178 Sum_probs=151.2
Q ss_pred cccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeC
Q 037310 341 LWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDP 420 (656)
Q Consensus 341 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l 420 (656)
.+.+++.|++++|.+........+++|++|++++|.+++..+..++.+++|++|++++|.+...+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 44567777777666654333345667777777777666555555667777777777777555666666777777777777
Q ss_pred CCCCCc-ccCccccCCCCCCeEecCCcccc-ccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCC
Q 037310 421 ARSKIR-RLPMELKYLVHLKRLNLEFTRLT-RIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHL 498 (656)
Q Consensus 421 ~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 498 (656)
++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|++++|.. .+..+..++++++|
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~~l~~L 262 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL------------TGPIPSSLGNLKNL 262 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee------------ccccChhHhCCCCC
Confidence 777655 45666777777777777777555 34444 66777777777776662 33445556666666
Q ss_pred cEEEEEecchhhhHhhhcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCc-cccccCCCccEEEE
Q 037310 499 NVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHL-TWLIVAPNLKHVRI 575 (656)
Q Consensus 499 ~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~-~~l~~l~~L~~L~l 575 (656)
+.|+++.+.... .++........+ +.|++++|.... ++..+..+++|+.| +.++.....+ ..+..+++|++|++
T Consensus 263 ~~L~L~~n~l~~--~~p~~l~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 263 QYLFLYQNKLSG--PIPPSIFSLQKL-ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CEEECcCCeeec--cCchhHhhccCc-CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 666666543211 111112222334 556666555443 22233444555555 5554333222 23455566666666
Q ss_pred eCCchhhHHhcccc-----------cCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 576 SSCLDLEEIISVEK-----------LGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 576 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
++|.....++..-. .+......|..+..+++|+.|.+.++.-...+|.....+++|+.|
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 55543322211000 000001113344555666666666655444444444455666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=3.1e-19 Score=209.98 Aligned_cols=280 Identities=21% Similarity=0.175 Sum_probs=205.1
Q ss_pred CcccceeEeecchhhHhh-hc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 340 GLWKEVTRMSLMQIRIRR-LL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
..+.+++.|++++|.+.. +| .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+...+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 456789999999998763 44 4688999999999999888776777899999999999999878888999999999999
Q ss_pred EeCCCCCCc-ccCccccCCCCCCeEecCCcccc-ccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcC
Q 037310 418 LDPARSKIR-RLPMELKYLVHLKRLNLEFTRLT-RIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSL 495 (656)
Q Consensus 418 L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 495 (656)
|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|++++|.. .+..+..+.++
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~~l 283 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL------------SGPIPPSIFSL 283 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee------------eccCchhHhhc
Confidence 999999887 68888999999999999999776 45555 88999999999999873 45566778888
Q ss_pred CCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCc-cccccCCCccE
Q 037310 496 QHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHL-TWLIVAPNLKH 572 (656)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~-~~l~~l~~L~~ 572 (656)
++|+.|+++.+... ..++........+ +.|++++|.... .+..+..+++|+.| +.+|.....+ ..++.+++|+.
T Consensus 284 ~~L~~L~Ls~n~l~--~~~p~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 284 QKLISLDLSDNSLS--GEIPELVIQLQNL-EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred cCcCEEECcCCeec--cCCChhHcCCCCC-cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 88888888876532 1222222333446 888888877665 34445667788888 8776554333 35677888888
Q ss_pred EEEeCCchhhHHhccc-----------ccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHHH
Q 037310 573 VRISSCLDLEEIISVE-----------KLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSLR 635 (656)
Q Consensus 573 L~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~ 635 (656)
|++++|.....++... ..+.+....|..++.+++|+.|.+.+|.-...+|.....+++|+.|.
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 8888776433222110 01112233456788899999999999876666665555566666543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=1.1e-19 Score=183.83 Aligned_cols=303 Identities=17% Similarity=0.167 Sum_probs=168.2
Q ss_pred cEEEEcCCCCCCCCCC-CcccceeEeecchhhHhhhc-cCCCCCCcceEeccccCCc--ccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAPGI-GLWKEVTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSNDLN--EVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 399 (656)
.|+.+..+....+|.. +-+.++.+|++..|++..+- +++.++.||++++..|++. ++|++ +-.|..|.+|||+.|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 3555555555556553 44566777777777766554 4566777777777766553 45555 344666777777776
Q ss_pred CCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCc---
Q 037310 400 SLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQ--- 475 (656)
Q Consensus 400 ~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~--- 475 (656)
-....|..+..-.++-+|+|++|+|.++|.. +-+|+-|-+|+++.|.++.+|+. +.++.+|++|.+++|.....
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHh
Confidence 4555666666666666666666666666654 45666666666666666666665 66666666666666653211
Q ss_pred -CCC---------cccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEecccc
Q 037310 476 -EGD---------SILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRR 545 (656)
Q Consensus 476 -~~~---------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~ 545 (656)
.+. +-......-.|.++-.|.+|+.++++.++. ..++........+ ..|++++|.+.++.......
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L---p~vPecly~l~~L-rrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL---PIVPECLYKLRNL-RRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC---CcchHHHhhhhhh-heeccCcCceeeeeccHHHH
Confidence 000 000011222344455555666666665532 2233322223335 67777777776655544444
Q ss_pred ccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhH-Hhccc-c---------cCCcCcccccCccccccccccccc
Q 037310 546 SLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEE-IISVE-K---------LGEVSPEVMHNLIPLARIEYLILE 613 (656)
Q Consensus 546 ~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~---------~~~~~~~~~~~~~~~~~L~~L~l~ 613 (656)
.+|+.| ++.+.-...|..++.++.|+.|.+.++..--+ ++.+- + .++..+++|..+..|+.|+.|.+.
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 567777 66543333344566777777776665543211 11110 0 112234456677777777777776
Q ss_pred CCcchhhhcCCCCCCCChhHH
Q 037310 614 DLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 614 ~~~~l~~i~~~~~~~~~L~~L 634 (656)
. ..|-.+|..+--+|-|+.|
T Consensus 348 ~-NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 348 H-NRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred c-cceeechhhhhhcCCccee
Confidence 5 4555555544334444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.8e-18 Score=171.76 Aligned_cols=264 Identities=22% Similarity=0.183 Sum_probs=187.6
Q ss_pred cCCCCCCCCCC--CcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc
Q 037310 329 AGVGLQNAPGI--GLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH 404 (656)
Q Consensus 329 ~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 404 (656)
+.+.+++++.. .....++.|.+.+|.++.+. ++.++.+|.+|.++.|.++.+|...|..+++|+.|+|..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 34444444433 22346888888888888775 567788888888888888888888888888888888888843222
Q ss_pred CccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccccc
Q 037310 405 LLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 483 (656)
--..|..|++|+.|.+..|++..+-++ +..+.++++|++..|++..+..+-+-+|++|+.|+++.|.+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI----------- 305 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI----------- 305 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh-----------
Confidence 234677888888888888888887665 77888888888888888888776677888888888888883
Q ss_pred CccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceE-EEeccccccHHHH-HHhCCCC---
Q 037310 484 GREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSEL-LVFNQRRSLLQNI-CISYSKL--- 558 (656)
Q Consensus 484 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~-~~~~~~~~~L~~L-l~~~~~~--- 558 (656)
....+..+...++|+.|+++.+....+++ ..+.-...+ +.|.++.|....+ ...+.+.++|+.| ++.+.--
T Consensus 306 -~rih~d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 306 -QRIHIDSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred -heeecchhhhcccceeEeccccccccCCh--hHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 56667778888888888888776443332 223333445 7778887776653 2345666788888 7764321
Q ss_pred CCcc-ccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhh
Q 037310 559 KHLT-WLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSI 621 (656)
Q Consensus 559 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 621 (656)
++-. .+..+++|+.|++.++. ++.++. -.+.+|++|+.|++.+. .+.+|
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNq-lk~I~k------------rAfsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQ-LKSIPK------------RAFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred ecchhhhccchhhhheeecCce-eeecch------------hhhccCcccceecCCCC-cceee
Confidence 2211 24468899999998876 566654 37888999999998884 34433
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=9.8e-17 Score=189.09 Aligned_cols=274 Identities=22% Similarity=0.237 Sum_probs=189.7
Q ss_pred ccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc-cCCCCCCcceEeccccC-CcccchhHHhcCCcccEEEccCCC
Q 037310 323 EKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSND-LNEVNRDFFQFMASLRVLTLSDGS 400 (656)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 400 (656)
-.++...+.+...+|......++..|++.++.++.++ .+..+++|+.|+++++. +..++ . ++.+++|+.|++++|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecCCC
Confidence 3456666677777887777789999999999988876 45789999999999874 45554 3 7788999999999987
Q ss_pred CCccCccccCCcccCcEEeCCCC-CCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCCcCCC
Q 037310 401 LPGHLLTGISNLVSLQHLDPARS-KIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDKQEGD 478 (656)
Q Consensus 401 ~~~~~p~~~~~L~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (656)
....+|..++++++|+.|++++| .+..+|..+ ++++|++|++++| .+..+|. + ..+|++|++.+|..... +.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~--~~nL~~L~L~~n~i~~l-P~ 742 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--I--STNISWLDLDETAIEEF-PS 742 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--c--cCCcCeeecCCCccccc-cc
Confidence 78888999999999999999987 577888766 6788888888877 5555553 1 34555555555542111 00
Q ss_pred ccc------------------------------------------ccCccccHHHhhcCCCCcEEEEEecchhhhHhhhc
Q 037310 479 SIL------------------------------------------IGGREVLVVEILSLQHLNVLTVTLESFCALRMLLD 516 (656)
Q Consensus 479 ~~~------------------------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 516 (656)
... .......+..++++++|+.|++.+|. .+..++.
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--~L~~LP~ 820 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--NLETLPT 820 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--CcCeeCC
Confidence 000 00122245566677777777777654 2333333
Q ss_pred CcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCc
Q 037310 517 SPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSP 595 (656)
Q Consensus 517 ~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 595 (656)
... ...+ +.|++++|......+. ...+|+.| +.++.....+.++..+++|++|+|++|..+..++
T Consensus 821 ~~~-L~sL-~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~---------- 886 (1153)
T PLN03210 821 GIN-LESL-ESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS---------- 886 (1153)
T ss_pred CCC-cccc-CEEECCCCCccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----------
Confidence 332 2335 7777777766552222 13467777 7664433444467889999999999999888763
Q ss_pred ccccCcccccccccccccCCcchhhhcC
Q 037310 596 EVMHNLIPLARIEYLILEDLKNLKSIHS 623 (656)
Q Consensus 596 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 623 (656)
.....+++|+.+.+.+|++|..++.
T Consensus 887 ---~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 887 ---LNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ---cccccccCCCeeecCCCcccccccC
Confidence 3677899999999999999987654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.1e-18 Score=176.67 Aligned_cols=258 Identities=19% Similarity=0.175 Sum_probs=168.5
Q ss_pred CCCCC-CCcccceeEeecchhhHhhhc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCC
Q 037310 334 QNAPG-IGLWKEVTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISN 411 (656)
Q Consensus 334 ~~~~~-~~~~~~~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 411 (656)
.++|. ...+..+..|+++.|+++..| .+....++-+|++++|++..+|...|-++..|-+|||++| ....+|+.+-.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RR 171 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRR 171 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHH
Confidence 34444 355678888999999998887 4577788889999999999999888889999999999999 67778888889
Q ss_pred cccCcEEeCCCCCCccc-CccccCCCCCCeEecCCc--cccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCcccc
Q 037310 412 LVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFT--RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVL 488 (656)
Q Consensus 412 L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~--~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 488 (656)
|.+||+|+|++|.+... -..+..+++|++|+++++ -+..+|.+ +..|.+|+.++++.|+ ....
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~-------------Lp~v 237 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENN-------------LPIV 237 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccC-------------CCcc
Confidence 99999999998865421 112334566666666666 34456665 6666666666666665 4455
Q ss_pred HHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEE-------------------------Eecc
Q 037310 489 VVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-------------------------VFNQ 543 (656)
Q Consensus 489 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-------------------------~~~~ 543 (656)
|+-+-++.+|+.|+++.+.. .++.........+ ++|+++.|+...++ ....
T Consensus 238 Pecly~l~~LrrLNLS~N~i---teL~~~~~~W~~l-EtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKI---TELNMTEGEWENL-ETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred hHHHhhhhhhheeccCcCce---eeeeccHHHHhhh-hhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 66666666666666665532 2222222333334 44444444433333 3333
Q ss_pred ccccHHHHHHhCCCCCCcc-ccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhc
Q 037310 544 RRSLLQNICISYSKLKHLT-WLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIH 622 (656)
Q Consensus 544 ~~~~L~~Ll~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 622 (656)
.+.+|+.+...++.++..| .++.++.|+.|.|+.+..+ .+ |..+.-+|-|+.|++...++|.--|
T Consensus 314 KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TL-------------PeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TL-------------PEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-ec-------------hhhhhhcCCcceeeccCCcCccCCC
Confidence 3334444411223444333 4666777777777765533 23 5678889999999999999998544
Q ss_pred CC
Q 037310 623 SS 624 (656)
Q Consensus 623 ~~ 624 (656)
-.
T Consensus 380 KP 381 (1255)
T KOG0444|consen 380 KP 381 (1255)
T ss_pred Cc
Confidence 43
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-18 Score=174.70 Aligned_cols=257 Identities=19% Similarity=0.192 Sum_probs=195.9
Q ss_pred CcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 340 GLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
.-+..++.|+++.|.+..++ .+..-.+++.|++.+|.++.+..+.|..+.+|-.|.|+.|.+....+..|.+|++|+.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 34467889999999888775 5566678999999999999998888999999999999999444434456777999999
Q ss_pred EeCCCCCCccc-CccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCC
Q 037310 418 LDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQ 496 (656)
Q Consensus 418 L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 496 (656)
|+|..|.+... --.+..|++|+.|.+..|.+..+..+++..|.++++|++..|. .....-..+-+|+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~------------l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR------------LQAVNEGWLFGLT 293 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch------------hhhhhcccccccc
Confidence 99999988755 3358899999999999999999999889999999999999998 3444455677899
Q ss_pred CCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCCCCCcc--ccccCCCccE
Q 037310 497 HLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSKLKHLT--WLIVAPNLKH 572 (656)
Q Consensus 497 ~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~~~~~~--~l~~l~~L~~ 572 (656)
.|+.|+++.+....+.. +.-.+...+ +.|+++.|...++++ .+..++.|+.| ++.+ .+..+. .+..+++|++
T Consensus 294 ~L~~L~lS~NaI~rih~--d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHI--DSWSFTQKL-KELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhhhccchhhhheeec--chhhhcccc-eeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhh
Confidence 99999999875432221 233445556 999999999988644 56667788888 7663 444443 3557899999
Q ss_pred EEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcC
Q 037310 573 VRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHS 623 (656)
Q Consensus 573 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 623 (656)
|+|+.+.. .+...+ + ...+.++|+|++|.+.+ .+++.|+-
T Consensus 370 LdLr~N~l-s~~IED---a------a~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 370 LDLRSNEL-SWCIED---A------AVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred hcCcCCeE-EEEEec---c------hhhhccchhhhheeecC-ceeeecch
Confidence 99988763 322221 0 13577899999999999 77887754
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1.5e-17 Score=160.40 Aligned_cols=259 Identities=23% Similarity=0.215 Sum_probs=159.3
Q ss_pred CCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 339 IGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
.+.+.++..|+++.|.+..+|++.+|+.|..|++..|+++-++......++++.+||+++| -.+.+|.++..|.+|.+|
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERL 280 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhh
Confidence 4555666667777777777777777777777777777666666665666777777777777 556667677777777777
Q ss_pred eCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcC----------------------------------------
Q 037310 419 DPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISN---------------------------------------- 458 (656)
Q Consensus 419 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~---------------------------------------- 458 (656)
|+++|.++.+|..++++ +|+.|.+.+|.++.+..+++++
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 77777777777777777 6776666666555444433221
Q ss_pred -CCCCcEEEee--------------------------ecCCCCcCCC-----------cccccCccccHHHhhcCCCCcE
Q 037310 459 -LKMLRVLRMY--------------------------ECGSDKQEGD-----------SILIGGREVLVVEILSLQHLNV 500 (656)
Q Consensus 459 -l~~L~~L~l~--------------------------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~l~~L~~ 500 (656)
+-+.++|.++ +|+..+.+.. ..........+..+..+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 1122222222 2221110000 0001122344566778899999
Q ss_pred EEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHHHHhCCCCCCcc--ccccCCCccEEEEeCC
Q 037310 501 LTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKLKHLT--WLIVAPNLKHVRISSC 578 (656)
Q Consensus 501 L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~~--~l~~l~~L~~L~l~~~ 578 (656)
|+++++. +..++....-...+ +.|+++.|.....+.-.-.+..|+.++...+.+..++ .+.++.+|..|++.++
T Consensus 440 L~L~NN~---Ln~LP~e~~~lv~L-q~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 440 LDLSNNL---LNDLPEEMGSLVRL-QTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred eecccch---hhhcchhhhhhhhh-heecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 9999774 44455444444446 9999998855443322222223333344445555443 4778999999999987
Q ss_pred chhhHHhcccccCCcCcccccCcccccccccccccCCcc
Q 037310 579 LDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKN 617 (656)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 617 (656)
. +..+ |+.+|+|.+|+.|.+++.|-
T Consensus 516 d-lq~I-------------Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 516 D-LQQI-------------PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred c-hhhC-------------ChhhccccceeEEEecCCcc
Confidence 6 5555 56899999999999999663
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=1.2e-16 Score=154.31 Aligned_cols=216 Identities=19% Similarity=0.221 Sum_probs=144.5
Q ss_pred eEeecchhhHhhh-ccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 346 TRMSLMQIRIRRL-LESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 346 ~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
..+.++.|.++.+ +...++..+.+|.++.|.+...|+. ++.+..++.++.+.| ....+|.+++.+.+|..|+++.|.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc
Confidence 3445555555544 3556777777888888777777765 667777777777777 566677777777888888888777
Q ss_pred CcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 425 IRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 425 ~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
+.++|++++.+..|+.++...|++.++|.+ +..+.+|..+.+.+|+ ....+.+.-+++.|+.|++.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~-------------l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNK-------------LKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccc-------------hhhCCHHHHHHHHHHhcccc
Confidence 777877777777777777777777777776 6677777777777776 33334444446677777766
Q ss_pred ecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCcc--ccccCCCccEEEEeCCchh
Q 037310 505 LESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLT--WLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~ 581 (656)
.+ .+..++........+ +.|+++.++...++ ++.+++.|++| +.. +.++.++ ....+++|..|++.+++ +
T Consensus 192 ~N---~L~tlP~~lg~l~~L-~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk-l 264 (565)
T KOG0472|consen 192 SN---LLETLPPELGGLESL-ELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK-L 264 (565)
T ss_pred hh---hhhcCChhhcchhhh-HHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc-c
Confidence 54 445555555555556 66677776666654 66777777777 544 3444443 23367777777777665 3
Q ss_pred hHH
Q 037310 582 EEI 584 (656)
Q Consensus 582 ~~~ 584 (656)
++.
T Consensus 265 ke~ 267 (565)
T KOG0472|consen 265 KEV 267 (565)
T ss_pred ccC
Confidence 433
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.3e-16 Score=133.85 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=127.0
Q ss_pred CCCCCCCCcccceeEeecchhhHhhhc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCC
Q 037310 333 LQNAPGIGLWKEVTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISN 411 (656)
Q Consensus 333 ~~~~~~~~~~~~~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 411 (656)
..+++....++++.+|.++.+.++.+| .+..+.+|++|.++.|+++.+|.. ++.++.|+.|++.-| ....+|..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 345566677778888888888887765 567888888888888888888776 778888888888887 66778888888
Q ss_pred cccCcEEeCCCCCCc--ccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccH
Q 037310 412 LVSLQHLDPARSKIR--RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLV 489 (656)
Q Consensus 412 L~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 489 (656)
++-|+.||+.+|++. .+|.++-.++.|+.|+++.|.++-+|++ ++++++|+.|.+..|. .-..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdnd-------------ll~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDND-------------LLSLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCc-------------hhhCc
Confidence 888888888888776 5788888888888888888888888887 8888888888888776 44567
Q ss_pred HHhhcCCCCcEEEEEecc
Q 037310 490 VEILSLQHLNVLTVTLES 507 (656)
Q Consensus 490 ~~l~~l~~L~~L~l~~~~ 507 (656)
.+++.|+.|++|.+.+++
T Consensus 167 keig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHHHHhcccce
Confidence 788888888888887764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=2.8e-14 Score=151.87 Aligned_cols=245 Identities=20% Similarity=0.200 Sum_probs=154.8
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
.++.|....|.+..+-.-.-..+++.++++.+.++.++ +.++.+.+|+.++...| ....+|..+....+|++|.+..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 44555555555443323334445666666666666665 55666666666666666 33556666666666666666666
Q ss_pred CCcccCccccCCCCCCeEecCCccccccChhhhcC-------------------------CCCCcEEEeeecCCCCcCCC
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISN-------------------------LKMLRVLRMYECGSDKQEGD 478 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~-------------------------l~~L~~L~l~~~~~~~~~~~ 478 (656)
.++.+|+....+.+|++|++..|++..+|+..+.. ++.|+.|++.+|.
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~------- 370 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH------- 370 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-------
Confidence 66666666666666666666666666666543333 3344444444444
Q ss_pred cccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHHHHhCCCC
Q 037310 479 SILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKL 558 (656)
Q Consensus 479 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~ 558 (656)
.+.....-|.+.++|+.|+++++....+.+ ........+ +.|.++||....++-....++.|+.|....+.+
T Consensus 371 -----Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~L-eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 371 -----LTDSCFPVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEEL-EELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred -----ccccchhhhccccceeeeeecccccccCCH--HHHhchHHh-HHHhcccchhhhhhHHHHhhhhhHHHhhcCCce
Confidence 355556678888999999999885322222 122333446 899999998888776677777888883333456
Q ss_pred CCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcch
Q 037310 559 KHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNL 618 (656)
Q Consensus 559 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 618 (656)
...|.+..++.|+.+|++.+. +..... |..... |+|++|++++...+
T Consensus 443 ~~fPe~~~l~qL~~lDlS~N~-L~~~~l-----------~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 443 LSFPELAQLPQLKVLDLSCNN-LSEVTL-----------PEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred eechhhhhcCcceEEecccch-hhhhhh-----------hhhCCC-cccceeeccCCccc
Confidence 666688999999999999655 554432 122222 89999999998763
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.1e-15 Score=127.26 Aligned_cols=169 Identities=22% Similarity=0.231 Sum_probs=139.5
Q ss_pred hHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcccc
Q 037310 354 RIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELK 433 (656)
Q Consensus 354 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~ 433 (656)
++..++.+-++++++.|.++.|.++.++|. +..+++|++|++++| .+..+|.+++.|+.|+.|++.-|.+..+|.+++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 456677788899999999999999999988 889999999999999 788899999999999999999999999999999
Q ss_pred CCCCCCeEecCCcccc--ccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhh
Q 037310 434 YLVHLKRLNLEFTRLT--RIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCAL 511 (656)
Q Consensus 434 ~l~~L~~L~l~~~~~~--~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 511 (656)
.++-|+.|++.+|++. .+|-. +-.|+.|+.|+++.|. -...+.++++|++|+.|.+..+. +
T Consensus 100 s~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dnd-------------fe~lp~dvg~lt~lqil~lrdnd---l 162 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDND-------------FEILPPDVGKLTNLQILSLRDND---L 162 (264)
T ss_pred CCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCC-------------cccCChhhhhhcceeEEeeccCc---h
Confidence 9999999999999554 68877 7789999999999887 45678889999999999998664 3
Q ss_pred HhhhcCcccccccCCceeecccccceEEEec
Q 037310 512 RMLLDSPRLQSLSTPSLCLKHCCQSELLVFN 542 (656)
Q Consensus 512 ~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~ 542 (656)
-.++....-...+ +.|++.++...-++++.
T Consensus 163 l~lpkeig~lt~l-relhiqgnrl~vlppel 192 (264)
T KOG0617|consen 163 LSLPKEIGDLTRL-RELHIQGNRLTVLPPEL 192 (264)
T ss_pred hhCcHHHHHHHHH-HHHhcccceeeecChhh
Confidence 3333333333445 67777777655555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=2.9e-13 Score=148.58 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=85.7
Q ss_pred ccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 323 EKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
...+.+.......+|... ..+++.|.+.+|.++.+|.. .++|++|++++|.++.++. ..++|+.|++++| ..
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccCC-ch
Confidence 445666666666666632 34788888888888877753 5788888888888887753 2467778888777 34
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
..+|.. ..+|+.|++++|++..+|.. +++|+.|++++|++..+|.. ..+|+.|.+++|.
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~ 333 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQ 333 (788)
T ss_pred hhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC----cccccccccccCc
Confidence 445542 24566777777777777652 35677777777777666641 2345566666655
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=1.4e-11 Score=144.55 Aligned_cols=274 Identities=14% Similarity=0.184 Sum_probs=167.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC-hhhHHHHHHHHHHHhCCCCCC-----------CCcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK-DLQLKRIQDCIARKIGLFSRS-----------WNSK 71 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----------~~~~ 71 (656)
..+++.|+|++|.||||++...+++. + .+.|+++.. ..+...+...++..+...... ....
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 46799999999999999999988643 2 588999853 334455555566555321110 0001
Q ss_pred cHHHHHHHHHHhhC--CccEEEEEeCCcCchh--h-hhhccccCCCCCCCcEEEEEceehhhhcc--c-CCcceEeec--
Q 037310 72 SLLEKAEDIFKVMK--RKKFVLLLDDIWEPVD--L-AQVGLLVPSATRASNKVVFTTLEFEIGGQ--M-EAHKSFEVE-- 141 (656)
Q Consensus 72 ~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--~-~~~~~~l~~~~~~~~~iliTTR~~~~~~~--~-~~~~~~~l~-- 141 (656)
........+...+. +.+++||+||++...+ . +.+...+.... .+.++|||||...-... . ......++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~ 182 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP-ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQ 182 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC-CCeEEEEEeCCCCCCchHhHHhcCcceecCHH
Confidence 22223333333332 6799999999965421 2 23333333333 66788899998532211 0 112245555
Q ss_pred --cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchH
Q 037310 142 --CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLA 219 (656)
Q Consensus 142 --~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (656)
+|+.+|+.++|....+... ..+.+.+|.+.++|+|+++..++..+.+.... .......+... ..
T Consensus 183 ~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~~~~~~~~------~~ 248 (903)
T PRK04841 183 QLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS--LHDSARRLAGI------NA 248 (903)
T ss_pred hCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhhhHhhcCC------Cc
Confidence 9999999999987665432 13447889999999999999998877543211 01111111110 01
Q ss_pred HHHHHHHhc-ccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccc-c
Q 037310 220 KKLYSSLKL-SYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEK-E 297 (656)
Q Consensus 220 ~~~~~~l~~-s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~-~ 297 (656)
..+...+.- .+++|++ ..+.+++..++++ .++.+..-.. .. .+.....+.+|.+.+++.. .
T Consensus 249 ~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~l------~~-------~~~~~~~L~~l~~~~l~~~~~ 311 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVRV------TG-------EENGQMRLEELERQGLFIQRM 311 (903)
T ss_pred hhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHHH------cC-------CCcHHHHHHHHHHCCCeeEee
Confidence 134443333 3789999 8999999999986 3333222111 11 1234677899999999654 2
Q ss_pred --ccCcEEecHHHHHHHHHHH
Q 037310 298 --EENCVKMHDVIRDMALWIA 316 (656)
Q Consensus 298 --~~~~~~~h~li~~~~~~~~ 316 (656)
....|..|++++++.++..
T Consensus 312 ~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 312 DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cCCCCEEehhHHHHHHHHHHH
Confidence 3347899999999988664
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1.3e-11 Score=136.45 Aligned_cols=231 Identities=19% Similarity=0.188 Sum_probs=111.9
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccC
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHL 405 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 405 (656)
+.+...+...+|... ..+++.|++++|.++.+|.. .+.+|++|++++|.++.++... ..+|+.|++++|. ...+
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~-L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINR-ITEL 256 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCCc-cCcC
Confidence 333444444444421 24566666666666655532 1246666666666666555432 2356666666663 3344
Q ss_pred ccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccc---
Q 037310 406 LTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILI--- 482 (656)
Q Consensus 406 p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~--- 482 (656)
|..+. .+|++|++++|++..+|..+. .+|++|++++|+++.+|.. + .++|++|++++|..... +.....
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L-P~~l~~sL~ 328 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTAL-PETLPPGLK 328 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccC-Cccccccce
Confidence 54443 356666666666655555442 3566666666655555543 1 12344444444432100 000000
Q ss_pred ------cCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhC
Q 037310 483 ------GGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISY 555 (656)
Q Consensus 483 ------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~ 555 (656)
......+..+. ++|+.|+++++.... ++.. +...+ +.|++++|....++... ..+|+.| ++++
T Consensus 329 ~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~---LP~~--lp~~L-~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N 398 (754)
T PRK15370 329 TLEAGENALTSLPASLP--PELQVLDVSKNQITV---LPET--LPPTI-TTLDVSRNALTNLPENL--PAALQIMQASRN 398 (754)
T ss_pred eccccCCccccCChhhc--CcccEEECCCCCCCc---CChh--hcCCc-CEEECCCCcCCCCCHhH--HHHHHHHhhccC
Confidence 00001122221 467777777664332 2211 12335 77777777665544322 2367777 7664
Q ss_pred CCCCCcccc----ccCCCccEEEEeCCch
Q 037310 556 SKLKHLTWL----IVAPNLKHVRISSCLD 580 (656)
Q Consensus 556 ~~~~~~~~l----~~l~~L~~L~l~~~~~ 580 (656)
.....+..+ +.++.+..|++.+++.
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 332222222 3457777888877664
No 19
>PF05729 NACHT: NACHT domain
Probab=99.27 E-value=3.1e-11 Score=110.58 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCC----CceEEEEEeCChhhHH---HHHHHHHHHhCCCCCCCCcccHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPND----FDLVIWVVVSKDLQLK---RIQDCIARKIGLFSRSWNSKSLLEKAE 78 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 78 (656)
+++.|+|.+|+||||++++++.+. ..... +..++|++.+...... .+...+....... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHHHHH
Confidence 589999999999999999999887 33222 3567777765544432 3444443333221 111111111
Q ss_pred HHHHhhCCccEEEEEeCCcCchhhh----------hhccccCCCCCCCcEEEEEceehhh---hcccCCcceEeeccCCh
Q 037310 79 DIFKVMKRKKFVLLLDDIWEPVDLA----------QVGLLVPSATRASNKVVFTTLEFEI---GGQMEAHKSFEVECLGY 145 (656)
Q Consensus 79 ~l~~~l~~~~~LlVlDdv~~~~~~~----------~~~~~l~~~~~~~~~iliTTR~~~~---~~~~~~~~~~~l~~l~~ 145 (656)
.+ ....+++++|+|++|+...-. .+...+.....++.+++||+|.... .........+++++|++
T Consensus 75 ~~--~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 75 EL--LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HH--HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 11 125789999999998764311 1333344423378999999999776 33334456899999999
Q ss_pred hhhHHHHHHHhc
Q 037310 146 DDSWKLFEVKVG 157 (656)
Q Consensus 146 ~ea~~L~~~~~~ 157 (656)
++..+++.+.+.
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999987663
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.3e-09 Score=108.34 Aligned_cols=181 Identities=13% Similarity=0.178 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH-
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK- 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 82 (656)
+.+++.|+|++|+||||+|+.+++.. .. ... .+.|+. ....+..++...++..++.+... .........+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~---~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG---RDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHHH
Confidence 45689999999999999999999986 21 111 222332 23345667888888888764332 122222223322
Q ss_pred ----hhCCccEEEEEeCCcCch--hhhhhccccC--CCCCCCcEEEEEceehhhhcccC----------CcceEeeccCC
Q 037310 83 ----VMKRKKFVLLLDDIWEPV--DLAQVGLLVP--SATRASNKVVFTTLEFEIGGQME----------AHKSFEVECLG 144 (656)
Q Consensus 83 ----~l~~~~~LlVlDdv~~~~--~~~~~~~~l~--~~~~~~~~iliTTR~~~~~~~~~----------~~~~~~l~~l~ 144 (656)
...+++.++|+||++... .++.+..... ........|++|.... ....+. ....+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 226788999999998653 3444332211 1111222344554432 221111 12357899999
Q ss_pred hhhhHHHHHHHhcCCCCCCC-CChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 145 YDDSWKLFEVKVGRDTLDSH-PDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
.+|..+++...+........ .-.++....|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999887754321111 1234678999999999999999888765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3.1e-12 Score=141.45 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=133.9
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
+...|.+.+..++.+|..- .++++.|++++|.++.++...+ ++|+.|++++|+ ...+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 4567888888888887521 3589999999999999887643 589999999994 556776554 58999999999
Q ss_pred CCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
.+..+|..+. .+|+.|++++|++..+|.. + .++|+.|++++|.... .+..+. ++|+.|++
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~-------------LP~~lp--~sL~~L~L 311 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRT-------------LPAHLP--SGITHLNV 311 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCCcccc-------------Ccccch--hhHHHHHh
Confidence 9999998764 5899999999999999875 4 3589999999997411 111121 24556666
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCc
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
+.+.... ++.. ....+ +.|++++|....++..+ +++|+.| +++|.. ..++. .-.++|++|+|++|.
T Consensus 312 s~N~Lt~---LP~~--l~~sL-~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L-~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 312 QSNSLTA---LPET--LPPGL-KTLEAGENALTSLPASL--PPELQVLDVSKNQI-TVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred cCCcccc---CCcc--ccccc-eeccccCCccccCChhh--cCcccEEECCCCCC-CcCCh-hhcCCcCEEECCCCc
Confidence 6554332 2211 11335 67777776655443222 2467777 666532 32321 113577777777765
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-12 Score=139.68 Aligned_cols=251 Identities=21% Similarity=0.194 Sum_probs=181.3
Q ss_pred EeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCc
Q 037310 347 RMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIR 426 (656)
Q Consensus 347 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~ 426 (656)
.|.+.+|.+. ......+.+|++|....|.+..+.. .-++|+.|....|......+ .. --.+|++++++++++.
T Consensus 182 ~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~-~p-~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV-HP-VPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeecccchhh-hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc-cc-ccccceeeecchhhhh
Confidence 5888888887 6677889999999999998887754 25789999999986553332 12 2367999999999999
Q ss_pred ccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEec
Q 037310 427 RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLE 506 (656)
Q Consensus 427 ~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 506 (656)
.+|.+++.+.+|+.+++..|.+..+|.. +..+.+|+.|.+..|. ....+..+..+++|+.|++..+
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~ne-------------l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYNE-------------LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhhh-------------hhhCCCcccccceeeeeeehhc
Confidence 9999999999999999999999999998 8899999999999987 5556667778899999999977
Q ss_pred chhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCC-CCCccccccCCCccEEEEeCCchhhH
Q 037310 507 SFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSK-LKHLTWLIVAPNLKHVRISSCLDLEE 583 (656)
Q Consensus 507 ~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 583 (656)
....+.... +......+ ..|..+.+.....+ .+....+.|+.| +.++.. -..+|.+.++.+|+.|+|+++. +..
T Consensus 321 ~L~~lp~~~-l~v~~~~l-~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~ 397 (1081)
T KOG0618|consen 321 NLPSLPDNF-LAVLNASL-NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNS 397 (1081)
T ss_pred cccccchHH-HhhhhHHH-HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-ccc
Confidence 543333310 00111112 44444444443332 233344578888 766432 3445778889999999999876 555
Q ss_pred HhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 584 IISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
++. ..+.+++.|+.|.+++ .+|+.+|.....+++|+.|
T Consensus 398 fpa------------s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 398 FPA------------SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred CCH------------HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHH
Confidence 544 2566888888888888 6777777655555666655
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=7.7e-11 Score=129.67 Aligned_cols=213 Identities=19% Similarity=0.099 Sum_probs=115.4
Q ss_pred cCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccc
Q 037310 329 AGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTG 408 (656)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 408 (656)
....+..+|. ..++++.|++++|.++.+|.. .++|+.|++++|.++.++. .+.+|+.|++++| ....+|.
T Consensus 230 ~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N-~Lt~LP~- 299 (788)
T PRK15387 230 PDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QLTSLPV- 299 (788)
T ss_pred cCCcCCCCCC--CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhh----chhhcCEEECcCC-ccccccc-
Confidence 3344444443 235666777777766666532 3466666666665555442 1234555555555 2333442
Q ss_pred cCCcccCcEEeCCCCCCcccCcccc-----------------CCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 409 ISNLVSLQHLDPARSKIRRLPMELK-----------------YLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 409 ~~~L~~L~~L~l~~~~~~~lp~~~~-----------------~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.+++|+.|++++|++..+|.... -..+|++|++++|+++.+|.. ..+|+.|++++|.
T Consensus 300 --~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~ 373 (788)
T PRK15387 300 --LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNR 373 (788)
T ss_pred --cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC----Ccccceehhhccc
Confidence 12455555555555555443111 113455555555555555541 2345555555554
Q ss_pred CCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH
Q 037310 472 SDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI 551 (656)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L 551 (656)
. . ..+. ...+|+.|+++.+.... ++.. ...+ +.|++++|....++. .+.+|+.|
T Consensus 374 L------------~-~LP~---l~~~L~~LdLs~N~Lt~---LP~l---~s~L-~~LdLS~N~LssIP~---l~~~L~~L 427 (788)
T PRK15387 374 L------------T-SLPA---LPSGLKELIVSGNRLTS---LPVL---PSEL-KELMVSGNRLTSLPM---LPSGLLSL 427 (788)
T ss_pred c------------c-cCcc---cccccceEEecCCcccC---CCCc---ccCC-CEEEccCCcCCCCCc---chhhhhhh
Confidence 2 1 1111 12467888888775432 2222 2346 888888887665542 23478888
Q ss_pred -HHhCCCCCCccccccCCCccEEEEeCCchhhH
Q 037310 552 -CISYSKLKHLTWLIVAPNLKHVRISSCLDLEE 583 (656)
Q Consensus 552 -l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 583 (656)
++++.....+..++.+++|+.|+|++|+.-..
T Consensus 428 ~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 428 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 87754433444677889999999998875443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=7.8e-13 Score=128.08 Aligned_cols=273 Identities=19% Similarity=0.103 Sum_probs=179.9
Q ss_pred ccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCC
Q 037310 323 EKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGS 400 (656)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 400 (656)
...+.+.+.+..++|.. -.+....+.+..|.++.+| .++.+.+||.|+++.|.|+.+.|+.|.+++.|-.|-+.+++
T Consensus 48 g~~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CceEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 34566777777788763 3457788999999999998 56999999999999999999999999999999999888855
Q ss_pred CCccCcc-ccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCC----
Q 037310 401 LPGHLLT-GISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDK---- 474 (656)
Q Consensus 401 ~~~~~p~-~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~---- 474 (656)
.+..+|+ .|++|..||.|.+.-|.+..++. .+..+++|..|.+..|.+..++.+.+..+.+++++++..|.+.-
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 7777775 68899999999999998887765 48899999999999999999999779999999999987776211
Q ss_pred -c-------CCCcccccCccccHHHhh-----cC------CCCcEE--EEEecc--hhhhHhhhcCcccccccCCceeec
Q 037310 475 -Q-------EGDSILIGGREVLVVEIL-----SL------QHLNVL--TVTLES--FCALRMLLDSPRLQSLSTPSLCLK 531 (656)
Q Consensus 475 -~-------~~~~~~~~~~~~~~~~l~-----~l------~~L~~L--~l~~~~--~~~~~~l~~~~~~~~~ll~~L~l~ 531 (656)
. .+.+++. .....+..+. .. ..++.+ .+.... ...... ..++....+ +.|+++
T Consensus 207 ~wla~~~a~~~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~--~cf~~L~~L-~~lnls 282 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA--KCFKKLPNL-RKLNLS 282 (498)
T ss_pred chhhhHHhhchhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH--HHHhhcccc-eEeccC
Confidence 0 0000000 0000000000 00 000000 000000 000000 012233345 777788
Q ss_pred ccccceEE-EeccccccHHHH-HHhCCCCCCccc--cccCCCccEEEEeCCchhhHHhcccccCCcCcccccCccccccc
Q 037310 532 HCCQSELL-VFNQRRSLLQNI-CISYSKLKHLTW--LIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARI 607 (656)
Q Consensus 532 ~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 607 (656)
+|...++. ..+.+...++.| +.. +.++.+.. +..+..|+.|+|.++....-. |..|..+.+|
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-------------~~aF~~~~~l 348 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-------------PGAFQTLFSL 348 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEe-------------ccccccccee
Confidence 87777753 345666677777 655 35555542 457788888888887643322 2356666667
Q ss_pred ccccccC
Q 037310 608 EYLILED 614 (656)
Q Consensus 608 ~~L~l~~ 614 (656)
.+|.+-.
T Consensus 349 ~~l~l~~ 355 (498)
T KOG4237|consen 349 STLNLLS 355 (498)
T ss_pred eeeehcc
Confidence 7776653
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=4.8e-10 Score=119.82 Aligned_cols=276 Identities=16% Similarity=0.145 Sum_probs=178.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHHhCCCCCCC-----------Ccc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARKIGLFSRSW-----------NSK 71 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~-----------~~~ 71 (656)
+.+.+.|..|+|.||||++.+.+... ..-..+.|++.+ ...+...+...++..++...++. ...
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 57899999999999999999998743 344578999975 44567777777777776432221 122
Q ss_pred cHHHHHHHHHHhhC--CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhhhcccC---CcceE----ee
Q 037310 72 SLLEKAEDIFKVMK--RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQME---AHKSF----EV 140 (656)
Q Consensus 72 ~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~---~~~~~----~l 140 (656)
+.......+...+. .++..+||||.+-. ..++.-...+....+.+-+.|||||++.-..... ..... +.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33344445555443 46889999998633 2344333334444447888999999986432210 11122 23
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHH
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAK 220 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (656)
-.|+.+|+.++|....+..- .....+.+....+|.+-|+.+++=.++++.+.+.--..+ .+..+
T Consensus 192 Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L----------sG~~~ 255 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL----------SGAAS 255 (894)
T ss_pred hcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc----------cchHH
Confidence 46789999999987654322 133478999999999999999988877434333222211 11111
Q ss_pred HHH-HHHhcccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccc---
Q 037310 221 KLY-SSLKLSYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEK--- 296 (656)
Q Consensus 221 ~~~-~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~--- 296 (656)
-+. ....--+++||+ +.+.+++-+++++.-- . +++..- ...+.+..++.+|.+++++-.
T Consensus 256 ~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~---~-eL~~~L------------tg~~ng~amLe~L~~~gLFl~~Ld 318 (894)
T COG2909 256 HLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN---D-ELCNAL------------TGEENGQAMLEELERRGLFLQRLD 318 (894)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh---H-HHHHHH------------hcCCcHHHHHHHHHhCCCceeeec
Confidence 111 223335789999 8999999999885321 1 222211 122456678999999999885
Q ss_pred cccCcEEecHHHHHHHHHHH
Q 037310 297 EEENCVKMHDVIRDMALWIA 316 (656)
Q Consensus 297 ~~~~~~~~h~li~~~~~~~~ 316 (656)
+....|+.|+++.+|.+.-.
T Consensus 319 d~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 319 DEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CCCceeehhHHHHHHHHhhh
Confidence 46778999999999987553
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=3.2e-11 Score=123.44 Aligned_cols=182 Identities=20% Similarity=0.174 Sum_probs=108.5
Q ss_pred ceeEeecchhhH-----hhhc-cCCCCCCcceEeccccCCcc------cchhHHhcCCcccEEEccCCCCCccCccccCC
Q 037310 344 EVTRMSLMQIRI-----RRLL-ESSSSPHLQTLFLGSNDLNE------VNRDFFQFMASLRVLTLSDGSLPGHLLTGISN 411 (656)
Q Consensus 344 ~~~~L~l~~~~~-----~~l~-~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 411 (656)
.++.+.+.++.+ ..++ .+...++++.|+++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 466666666654 2233 34566778888888776552 12234666778888888888655455555555
Q ss_pred ccc---CcEEeCCCCCCc-----ccCccccCC-CCCCeEecCCcccc-----ccChhhhcCCCCCcEEEeeecCCCCcCC
Q 037310 412 LVS---LQHLDPARSKIR-----RLPMELKYL-VHLKRLNLEFTRLT-----RIPQEVISNLKMLRVLRMYECGSDKQEG 477 (656)
Q Consensus 412 L~~---L~~L~l~~~~~~-----~lp~~~~~l-~~L~~L~l~~~~~~-----~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 477 (656)
+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.++ .++.. +..+++|++|++++|...
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~---- 178 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG---- 178 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc----
Confidence 554 888888888765 223345566 78888888888666 23322 556677888888887730
Q ss_pred CcccccCccccHHHhhcCCCCcEEEEEecchh--hhHhhhcCcccccccCCceeeccccc
Q 037310 478 DSILIGGREVLVVEILSLQHLNVLTVTLESFC--ALRMLLDSPRLQSLSTPSLCLKHCCQ 535 (656)
Q Consensus 478 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~~~~~~~ll~~L~l~~~~~ 535 (656)
..........+..+++|+.|+++.+... ....+.........+ +.|++++|..
T Consensus 179 ----~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L-~~L~ls~n~l 233 (319)
T cd00116 179 ----DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL-EVLNLGDNNL 233 (319)
T ss_pred ----hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC-CEEecCCCcC
Confidence 0011123345556678888888776542 122232333333445 7777777653
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=5.6e-11 Score=133.63 Aligned_cols=251 Identities=23% Similarity=0.216 Sum_probs=164.1
Q ss_pred hhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC-CccC-ccccCCcccCcEEeCCCC-CCcccCccc
Q 037310 356 RRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL-PGHL-LTGISNLVSLQHLDPARS-KIRRLPMEL 432 (656)
Q Consensus 356 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~-p~~~~~L~~L~~L~l~~~-~~~~lp~~~ 432 (656)
...+...+....|...+.++.+..++.. ...+.|+.|-+.+|.. ...+ +..|..++.|++|||++| .+.++|..+
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3355667778889999988877766543 3455799998888842 3333 334888999999999987 678999999
Q ss_pred cCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhH
Q 037310 433 KYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALR 512 (656)
Q Consensus 433 ~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 512 (656)
+.|.+|++|+++++.+..+|.+ ++++.+|.+|++..+.. ....+..+..|++|+.|.+.........
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~------------l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGR------------LESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred hhhhhhhcccccCCCccccchH-HHHHHhhheeccccccc------------cccccchhhhcccccEEEeeccccccch
Confidence 9999999999999999999999 99999999999998873 2223444556899999999866421111
Q ss_pred hhhcCcccccccCCceeecccccceEEEeccccccHHHH-H----HhCCCCCCccccccCCCccEEEEeCCchhhHHhcc
Q 037310 513 MLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-C----ISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISV 587 (656)
Q Consensus 513 ~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 587 (656)
...........+ +.|++..+.. .+.........|..+ . .++.....++.+..+++|+.|.+.+|...+.....
T Consensus 659 ~~l~el~~Le~L-~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 659 LLLKELENLEHL-ENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhHHhhhcccch-hhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc
Confidence 111112233334 5555554444 222233444556655 2 23334445556778999999999999875432210
Q ss_pred cc---cC----CcCc------cc---ccCcccccccccccccCCcchhhhcC
Q 037310 588 EK---LG----EVSP------EV---MHNLIPLARIEYLILEDLKNLKSIHS 623 (656)
Q Consensus 588 ~~---~~----~~~~------~~---~~~~~~~~~L~~L~l~~~~~l~~i~~ 623 (656)
.. .. ..+. .+ +.+....|+|+.|.+..|..+..+..
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 00 00 0000 00 12233566788888887777766543
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=2.3e-08 Score=105.35 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=109.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
....+.|+|++|+|||++++.++++. ......-.++|+++....+...+...++.++............++....+.+.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 44668899999999999999999986 22222234667777777777888889999886522211233456666666666
Q ss_pred hC--CccEEEEEeCCcCch------hhhhhccccCCCCCCCcEEEEEceehhhhcccC-------CcceEeeccCChhhh
Q 037310 84 MK--RKKFVLLLDDIWEPV------DLAQVGLLVPSATRASNKVVFTTLEFEIGGQME-------AHKSFEVECLGYDDS 148 (656)
Q Consensus 84 l~--~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~-------~~~~~~l~~l~~~ea 148 (656)
+. +++.+||||+++... .+..+...+.........+|.++....+..... ....+.+++.+.++.
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~ 212 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEI 212 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHH
Confidence 64 456899999997643 222332222222101223555555543322211 124678999999999
Q ss_pred HHHHHHHhcCC--CCCCCCChHHHHHHHHHHc----CCCchHHHHHH
Q 037310 149 WKLFEVKVGRD--TLDSHPDIPELAKTVVKEC----GGLPLALITVG 189 (656)
Q Consensus 149 ~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~~----~g~Plal~~~a 189 (656)
.+++..++... ....++ +....+++.+ |..+.|+.++-
T Consensus 213 ~~il~~r~~~~~~~~~~~~---~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 213 FDILKDRVEEGFYPGVVDD---EVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred HHHHHHHHHhhcccCCCCH---hHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999887432 111222 2234444444 44666666653
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=8.3e-12 Score=121.08 Aligned_cols=107 Identities=26% Similarity=0.343 Sum_probs=98.6
Q ss_pred CCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC-CCCcccCcc-ccCCCCCCeEe
Q 037310 365 PHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR-SKIRRLPME-LKYLVHLKRLN 442 (656)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~-~~~~~lp~~-~~~l~~L~~L~ 442 (656)
+....+++..|.|+.+|+..|+.+++||.|||+.|++...-|.+|..|.+|-.|-+.+ |+|+.+|.+ +.+|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3667899999999999999999999999999999977777799999999999888887 899999986 89999999999
Q ss_pred cCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 443 LEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 443 l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
+.-|.+..++.+++..|++|..|.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh
Confidence 99999999999999999999999999887
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.5e-10 Score=101.27 Aligned_cols=114 Identities=26% Similarity=0.385 Sum_probs=27.1
Q ss_pred hHhhhccCCCCCCcceEeccccCCcccchhHHh-cCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccc
Q 037310 354 RIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQ-FMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMEL 432 (656)
Q Consensus 354 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~ 432 (656)
.++.++...+..+++.|++.+|.++.+.. ++ .+.+|+.|++++| .+..++ .+..+++|+.|++++|.+..+++.+
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 34444444555555666666665555432 22 3555666666666 333332 3555666666666666666554443
Q ss_pred -cCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 433 -KYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 433 -~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
..+++|++|++++|++.++.. ..++.+++|+.|++.+|.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 245666666666664443322 114556666666666665
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=1.4e-08 Score=102.85 Aligned_cols=255 Identities=16% Similarity=0.118 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC----CCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS----RSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~l 80 (656)
...+.|+|++|+|||+||+.+++.. ...+ ..+..........+ ...+..+.... ++...- .....+.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l-~~~~~e~l 101 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRL-SPAVEELL 101 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHHHhcccCCEEEEehHhhh-CHHHHHHh
Confidence 4568899999999999999999987 2222 12221111111111 12222222111 000000 11223334
Q ss_pred HHhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhccc--CCcceEeeccCChhhhHHHHHHHhcC
Q 037310 81 FKVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQM--EAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~--~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
...+.+.+..+|+|+..+...+ ....+ +.+.|..||+...+.... .-...+++++++.++..+++.+.+..
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~----~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 102 YPAMEDFRLDIVIGKGPSARSV---RLDLP----PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred hHHHhhhheeeeeccCccccce---eecCC----CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 5555555555666655332222 11111 334455566664332211 01245789999999999999998875
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHHHHHHHHhcccccCCCCCc
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFLPDDAS 238 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 238 (656)
..... .++....|++.|+|.|..+..+...+. .... ....... ....-......+...|..++. ..
T Consensus 175 ~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~i-t~~~v~~~l~~l~~~~~~l~~-~~ 240 (305)
T TIGR00635 175 LNVEI---EPEAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKII-NRDIALKALEMLMIDELGLDE-ID 240 (305)
T ss_pred hCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCCc-CHHHHHHHHHHhCCCCCCCCH-HH
Confidence 43222 244578899999999976654444321 1000 0000000 001111233335667778887 55
Q ss_pred hhHHH-hhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHH-HHHHcccccccccC
Q 037310 239 RFCLL-YCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLIC-TLLHACLLEKEEEN 300 (656)
Q Consensus 239 k~~~~-~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~ 300 (656)
+..+. ....+.++ .++...+..... .........++ .|+++++++....+
T Consensus 241 ~~~L~al~~~~~~~-~~~~~~ia~~lg-----------~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 241 RKLLSVLIEQFQGG-PVGLKTLAAALG-----------EDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHHHHHHHhCCC-cccHHHHHHHhC-----------CCcchHHHhhhHHHHHcCCcccCCch
Confidence 55555 33445433 344433332221 22334556667 69999999865443
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=2.3e-08 Score=101.98 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=127.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC----CCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS----RSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~l 80 (656)
.+.+.|+|++|+|||++|+.+++.. ...+ .++........ .....++..+.... ++...- .....+.+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~~~~-~~l~~~l~~l~~~~vl~IDEi~~l-~~~~~e~l 122 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPALEKP-GDLAAILTNLEEGDVLFIDEIHRL-SPVVEEIL 122 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccccCh-HHHHHHHHhcccCCEEEEecHhhc-chHHHHHH
Confidence 5678899999999999999999987 2221 12221111111 11122222221100 000000 01112223
Q ss_pred HHhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccC--CcceEeeccCChhhhHHHHHHHhcC
Q 037310 81 FKVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQME--AHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~--~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
...+.+.+..+|+|+..+.... ...++ +.+-|..|++...+..... -...+++++++.++..+++.+.+..
T Consensus 123 ~~~~e~~~~~~~l~~~~~~~~~---~~~l~----~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 123 YPAMEDFRLDIMIGKGPAARSI---RLDLP----PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred HHHHHhcceeeeeccCccccce---eecCC----CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3333444444444443221111 11111 2344555666443322110 1245889999999999999998876
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHHHHHHHHhcccccCCCCCc
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFLPDDAS 238 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 238 (656)
.....+ ++.+..|++.|+|.|..+..+...+. .|.. ......-....-......+...+..|++ ..
T Consensus 196 ~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~----~~~~~~I~~~~v~~~l~~~~~~~~~l~~-~~ 261 (328)
T PRK00080 196 LGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQ----VKGDGVITKEIADKALDMLGVDELGLDE-MD 261 (328)
T ss_pred cCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHH----HcCCCCCCHHHHHHHHHHhCCCcCCCCH-HH
Confidence 543332 34588999999999965444443321 1111 0000000011112444556777888887 55
Q ss_pred hhHHH-hhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHH-HHHHcccccccccC
Q 037310 239 RFCLL-YCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLIC-TLLHACLLEKEEEN 300 (656)
Q Consensus 239 k~~~~-~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~ 300 (656)
+..+. ....|.++ .+....+..... ...+..+..++ .|++.++++....+
T Consensus 262 ~~~l~~~~~~~~~~-~~~~~~~a~~lg-----------~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 262 RKYLRTIIEKFGGG-PVGLDTLAAALG-----------EERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred HHHHHHHHHHcCCC-ceeHHHHHHHHC-----------CCcchHHHHhhHHHHHcCCcccCCch
Confidence 55554 55566555 355444433221 12234444555 89999999865433
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91 E-value=4.7e-09 Score=100.82 Aligned_cols=154 Identities=12% Similarity=0.162 Sum_probs=93.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.+.|+|++|+|||+||+.+++.. ......+.|+++.... .... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ---YFSP-----------------------AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh---hhhH-----------------------HHHhhc
Confidence 3568999999999999999999986 2223345677653110 0000 011111
Q ss_pred CCccEEEEEeCCcCc---hhhh-hhccccCCCCCCCcEEEE-Ecee---------hhhhcccCCcceEeeccCChhhhHH
Q 037310 85 KRKKFVLLLDDIWEP---VDLA-QVGLLVPSATRASNKVVF-TTLE---------FEIGGQMEAHKSFEVECLGYDDSWK 150 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~~~ili-TTR~---------~~~~~~~~~~~~~~l~~l~~~ea~~ 150 (656)
. +.-+||+||+|.. .+|. .+...+......+..++| |++. +.+..++.....++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1 3348999999853 2232 233333322213455544 4444 2444454555688999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHH
Q 037310 151 LFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRA 191 (656)
Q Consensus 151 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 191 (656)
++.+.+.......+ ++....|++.+.|....+..+-..
T Consensus 169 iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 169 VLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 99998875543333 445788888888876655544433
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.91 E-value=7.7e-08 Score=94.87 Aligned_cols=202 Identities=21% Similarity=0.156 Sum_probs=113.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH-H
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI-F 81 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~ 81 (656)
.+.-..++||+|+||||||+.++... ...| ..++... ..+++ +.++ +.- .
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdl-r~i~-------------------e~a~~ 98 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDL-REII-------------------EEARK 98 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHH-HHHH-------------------HHHHH
Confidence 45667789999999999999999975 3333 2222221 22222 2222 222 1
Q ss_pred HhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEE--Eceehhhhcc---cCCcceEeeccCChhhhHHHHHHHh
Q 037310 82 KVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVF--TTLEFEIGGQ---MEAHKSFEVECLGYDDSWKLFEVKV 156 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~ili--TTR~~~~~~~---~~~~~~~~l~~l~~~ea~~L~~~~~ 156 (656)
....+++.+|++|.|+.. +-.+....+|... .|..|+| ||.++.+.-. .....++++++|+.++-.+++.+.+
T Consensus 99 ~~~~gr~tiLflDEIHRf-nK~QQD~lLp~vE-~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 99 NRLLGRRTILFLDEIHRF-NKAQQDALLPHVE-NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HHhcCCceEEEEehhhhc-Chhhhhhhhhhhc-CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 223589999999999642 2222334455555 6777777 5666554211 2345689999999999999999954
Q ss_pred cCCCCCC---CCC-hHHHHHHHHHHcCCCchHHHHHH---HHHcCCC---ChhHHHHHHHHHhcCcccCCchHHHHHHHH
Q 037310 157 GRDTLDS---HPD-IPELAKTVVKECGGLPLALITVG---RAMASKK---TPREWEHAIEVLSSSAFKFSSLAKKLYSSL 226 (656)
Q Consensus 157 ~~~~~~~---~~~-~~~~~~~i~~~~~g~Plal~~~a---~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 226 (656)
....... ... .++....+++.++|--.+.--.. ..+.... ..+..+..+++-......-.+.+=.+.+++
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 3221111 111 24467788999999754322222 2222111 233444433332222222223333677777
Q ss_pred hcccccCCC
Q 037310 227 KLSYDFLPD 235 (656)
Q Consensus 227 ~~s~~~L~~ 235 (656)
.=|.....+
T Consensus 257 hKSvRGSD~ 265 (436)
T COG2256 257 HKSVRGSDP 265 (436)
T ss_pred HHhhccCCc
Confidence 778877776
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=1.3e-08 Score=98.84 Aligned_cols=177 Identities=18% Similarity=0.218 Sum_probs=89.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHH---------HHHHHhCCCCCC--------
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQD---------CIARKIGLFSRS-------- 67 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~~-------- 67 (656)
.+.+.|+|+.|+|||+|++++.+.. ...-..++|+............. .+...+......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 5789999999999999999999976 22222455554433332222111 111112111100
Q ss_pred CCcccHHHHHHHHHHhh--CCccEEEEEeCCcCch-h-------hhhhccccCC--CCCCCcEEEEEceehhhhcc----
Q 037310 68 WNSKSLLEKAEDIFKVM--KRKKFVLLLDDIWEPV-D-------LAQVGLLVPS--ATRASNKVVFTTLEFEIGGQ---- 131 (656)
Q Consensus 68 ~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-~-------~~~~~~~l~~--~~~~~~~iliTTR~~~~~~~---- 131 (656)
............+.+.+ .+++++||+||++... . ...+...+.. .. ....+|++..+..+...
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~~S~~~~~~~~~~~ 175 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QNVSIVITGSSDSLMEEFLDD 175 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-T
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CCceEEEECCchHHHHHhhcc
Confidence 01122233333333333 2456999999997655 1 1122222222 12 33334444444333221
Q ss_pred ----cCCcceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 132 ----MEAHKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 132 ----~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
.+....+.+++++.+++++++...+... ... +.-+....+|++.+||+|..|..
T Consensus 176 ~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 176 KSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred cCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 1233459999999999999999977554 122 22355679999999999988764
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=3.8e-10 Score=115.47 Aligned_cols=235 Identities=20% Similarity=0.119 Sum_probs=150.0
Q ss_pred CCCCCcceEeccccCCccc----chhHHhcCCcccEEEccCCCCC------ccCccccCCcccCcEEeCCCCCCc-ccCc
Q 037310 362 SSSPHLQTLFLGSNDLNEV----NRDFFQFMASLRVLTLSDGSLP------GHLLTGISNLVSLQHLDPARSKIR-RLPM 430 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~------~~~p~~~~~L~~L~~L~l~~~~~~-~lp~ 430 (656)
..+.+|+.|++.++.++.. .+..+...++|+.++++++... ..++..+..+++|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4455699999999987543 2333567788999999998544 123456778999999999999887 3444
Q ss_pred cccCCCC---CCeEecCCccccc-----cChhhhcCC-CCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEE
Q 037310 431 ELKYLVH---LKRLNLEFTRLTR-----IPQEVISNL-KMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVL 501 (656)
Q Consensus 431 ~~~~l~~---L~~L~l~~~~~~~-----l~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 501 (656)
.+..+.+ |++|++++|.+.. +... +..+ ++|++|++++|... ..........+..+++|+.|
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~--------~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLE--------GASCEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCC--------chHHHHHHHHHHhCCCcCEE
Confidence 4544444 9999999997763 2222 5566 89999999999841 00112345567788899999
Q ss_pred EEEecchhh--hHhhhcCcccccccCCceeecccccce-----EEEeccccccHHHH-HHhCCCCCC--ccccc-----c
Q 037310 502 TVTLESFCA--LRMLLDSPRLQSLSTPSLCLKHCCQSE-----LLVFNQRRSLLQNI-CISYSKLKH--LTWLI-----V 566 (656)
Q Consensus 502 ~l~~~~~~~--~~~l~~~~~~~~~ll~~L~l~~~~~~~-----~~~~~~~~~~L~~L-l~~~~~~~~--~~~l~-----~ 566 (656)
++..+.... ...+.........+ +.|++++|.... +...+...++|+.| +++|. +.. +..+. .
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSP 248 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhcc
Confidence 999876532 22222222222456 899999987643 11223445678888 87753 222 11221 2
Q ss_pred CCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 567 APNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 567 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
.+.|++|++++|......... +...+..+++|+.++++++.
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~---------l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKD---------LAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCceEEEccCCCCCcHHHHH---------HHHHHhcCCCccEEECCCCC
Confidence 379999999988643111000 01244556888888888754
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.3e-09 Score=98.18 Aligned_cols=134 Identities=23% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCCCCcccceeEeecchhhHhhhccCC-CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCcccc-CCc
Q 037310 335 NAPGIGLWKEVTRMSLMQIRIRRLLESS-SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGI-SNL 412 (656)
Q Consensus 335 ~~~~~~~~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~L 412 (656)
..+......+.+.|++.++.++.+..+. .+.+|++|++++|.++.+.. +..+++|+.|++++|. +..+...+ ..+
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~-I~~i~~~l~~~l 87 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNR-ISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCC-CCccccchHHhC
Confidence 4455555567899999999999988775 68999999999999998864 7889999999999994 44554444 468
Q ss_pred ccCcEEeCCCCCCcccC--ccccCCCCCCeEecCCccccccCh---hhhcCCCCCcEEEeeecC
Q 037310 413 VSLQHLDPARSKIRRLP--MELKYLVHLKRLNLEFTRLTRIPQ---EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 413 ~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~l~~---~~l~~l~~L~~L~l~~~~ 471 (656)
++|+.|++++|++..+- ..+..+++|+.|++.+|++...+. ..+..+++|+.|+.....
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 99999999999888654 357889999999999997775443 346789999999987766
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.88 E-value=4.6e-07 Score=94.42 Aligned_cols=276 Identities=16% Similarity=0.145 Sum_probs=146.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCC--C-ceEEEEEeCChhhHHHHHHHHHHHhC---CCCCCCCcccHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPND--F-DLVIWVVVSKDLQLKRIQDCIARKIG---LFSRSWNSKSLLEKA 77 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~--f-~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~ 77 (656)
....+.|+|++|+|||++++.+++........ . -.++|+++....+...+...++.++. .... .......+..
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~ 117 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVP-TTGLSTSEVF 117 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCC-CCCCCHHHHH
Confidence 34578999999999999999999865111111 1 24568888777777788888888883 2111 1122344455
Q ss_pred HHHHHhh--CCccEEEEEeCCcCch--h---hhhhccc--cCCCCCCCcEEEEEceehhhhccc-------CCcceEeec
Q 037310 78 EDIFKVM--KRKKFVLLLDDIWEPV--D---LAQVGLL--VPSATRASNKVVFTTLEFEIGGQM-------EAHKSFEVE 141 (656)
Q Consensus 78 ~~l~~~l--~~~~~LlVlDdv~~~~--~---~~~~~~~--l~~~~~~~~~iliTTR~~~~~~~~-------~~~~~~~l~ 141 (656)
..+.+.+ .+++++||||++|... . +..+... ..........+|.++......... -....+.++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP 197 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC
Confidence 5555555 3568899999997652 1 1222211 111110222344455443321111 112458899
Q ss_pred cCChhhhHHHHHHHhcC--CCCCCCCChHHHHHHHHHHcCCCchHH-HHHHH--HHc--CC---CChhHHHHHHHHHhcC
Q 037310 142 CLGYDDSWKLFEVKVGR--DTLDSHPDIPELAKTVVKECGGLPLAL-ITVGR--AMA--SK---KTPREWEHAIEVLSSS 211 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Plal-~~~a~--~l~--~~---~~~~~~~~~~~~l~~~ 211 (656)
+.+.+|..+++..++.. .....+++.-+.+..++....|.+..+ .++-. .++ .. -+.+..+...+....
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~- 276 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK- 276 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-
Confidence 99999999999988742 111223333344556677777887433 32211 111 11 123333333333211
Q ss_pred cccCCchHHHHHHHHhcccccCCCCCchhHHHhhccC--CCCceechhHHHHHHH--HhCccccCCCccHHHhHHHHHHH
Q 037310 212 AFKFSSLAKKLYSSLKLSYDFLPDDASRFCLLYCSLF--PEDYRISIEDLIDCWI--CEGLLDEYDGIRARNQGYSLICT 287 (656)
Q Consensus 212 ~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~~~~~~f--~~~~~~~~~~l~~~w~--~~~~~~~~~~~~~~~~~~~~l~~ 287 (656)
....-.+..|+. +.+..+..++.. .++..+...++...+. ++.+ . . ..........++..
T Consensus 277 ------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~-~-~~~~~~~~~~~l~~ 340 (365)
T TIGR02928 277 ------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G-V-DPLTQRRISDLLNE 340 (365)
T ss_pred ------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C-C-CCCcHHHHHHHHHH
Confidence 122234567776 455444333321 1333355555555332 2211 1 0 11344567778888
Q ss_pred HHHccccccc
Q 037310 288 LLHACLLEKE 297 (656)
Q Consensus 288 L~~~~Ll~~~ 297 (656)
|...|+++..
T Consensus 341 l~~~gli~~~ 350 (365)
T TIGR02928 341 LDMLGLVEAE 350 (365)
T ss_pred HHhcCCeEEE
Confidence 8888888873
No 39
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=5.8e-09 Score=103.40 Aligned_cols=294 Identities=17% Similarity=0.157 Sum_probs=189.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..|-|.++|.|||||||++-.+.. . ...+-+.+.++...+-.+...+.-.+...++.+.. +-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~--~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A--ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H--hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 357899999999999999999998 3 12344677777777777777777677776765332 223445556677
Q ss_pred hCCccEEEEEeCCcCchhhh-hhccccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCChh-hhHHHHHHHhcCCCC
Q 037310 84 MKRKKFVLLLDDIWEPVDLA-QVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLGYD-DSWKLFEVKVGRDTL 161 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~~~-~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~~~-ea~~L~~~~~~~~~~ 161 (656)
..++|.++|+||..+..+-- .+.-.+.... +.-.|+.|+|+.... .....+.++.++.- ++.++|.-.+..-..
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~-~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGAC-PRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccc-hhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 78899999999995432211 1111122222 445577788876532 34455677777754 788998766532211
Q ss_pred --CCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCC---hhHHHHHHHHHhcCcccCCchHHHHHHHHhcccccCCCC
Q 037310 162 --DSHPDIPELAKTVVKECGGLPLALITVGRAMASKKT---PREWEHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFLPDD 236 (656)
Q Consensus 162 --~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~ 236 (656)
.....-.....+|.+...|.|++|..+++....-.. .+....-...+..........+......+.+||.-|+.
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-
Confidence 112223455789999999999999999998876322 12233333334443333333445788999999999999
Q ss_pred CchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHccccccc---ccCcEEecHHHHHHHH
Q 037310 237 ASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKE---EENCVKMHDVIRDMAL 313 (656)
Q Consensus 237 ~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~---~~~~~~~h~li~~~~~ 313 (656)
..+.-|..++.|...+...... |.+.|-... ...-.....+-.+++++++... ....|+.-+-.+.|+.
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~----~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLAL----AVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHH----HHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 8999999999999887766432 332221110 1223344557788888888774 4446777777888887
Q ss_pred HHHcc
Q 037310 314 WIAST 318 (656)
Q Consensus 314 ~~~~~ 318 (656)
....+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 66543
No 40
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.78 E-value=2.7e-08 Score=96.10 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=91.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.|.|+|++|+|||++|+.+++.. .......+|+++..-.... ..+ ...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~~---~~~-----------------------~~~ 87 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQAD---PEV-----------------------LEG 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHhH---HHH-----------------------Hhh
Confidence 35678999999999999999999876 2222345566554322110 011 111
Q ss_pred hCCccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhHH
Q 037310 84 MKRKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSWK 150 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~~ 150 (656)
+.+ .-+|||||++.... .+.+...+......+..+|+||+.... ..+......++++++++++...
T Consensus 88 ~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~ 166 (226)
T TIGR03420 88 LEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIA 166 (226)
T ss_pred ccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHH
Confidence 222 23899999975421 223333332211133478888875331 1122223568999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 037310 151 LFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGR 190 (656)
Q Consensus 151 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 190 (656)
++.+.+.......+ ++..+.|++.++|.|..+.-+..
T Consensus 167 ~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 167 ALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 99876643332222 34467888889998877666543
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=2.5e-10 Score=115.98 Aligned_cols=193 Identities=23% Similarity=0.175 Sum_probs=116.9
Q ss_pred CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEe
Q 037310 363 SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLN 442 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 442 (656)
.+.-....+++.|.+..++.. ++.+-.|+.+.++.| ..-.+|..+.+|..|.+|+|+.|.+..+|..++.|+ |+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 344445566666666666554 555666666666666 455566667777777777777777777776665544 56666
Q ss_pred cCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCccccc
Q 037310 443 LEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQS 522 (656)
Q Consensus 443 l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~ 522 (656)
+++|+++.+|.+ ++.+.+|.+|+.+.|. ....+..++.|.+|+.|.+..+....+ +.... .
T Consensus 150 ~sNNkl~~lp~~-ig~~~tl~~ld~s~ne-------------i~slpsql~~l~slr~l~vrRn~l~~l---p~El~--~ 210 (722)
T KOG0532|consen 150 VSNNKLTSLPEE-IGLLPTLAHLDVSKNE-------------IQSLPSQLGYLTSLRDLNVRRNHLEDL---PEELC--S 210 (722)
T ss_pred EecCccccCCcc-cccchhHHHhhhhhhh-------------hhhchHHhhhHHHHHHHHHhhhhhhhC---CHHHh--C
Confidence 777777777766 6666677777777666 444566666666677666665533222 21111 1
Q ss_pred ccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCcc-cc---ccCCCccEEEEeCC
Q 037310 523 LSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLT-WL---IVAPNLKHVRISSC 578 (656)
Q Consensus 523 ~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~-~l---~~l~~L~~L~l~~~ 578 (656)
+-|..||+++|+...++..+..+..|+.| |.+ +-++.++ -+ +...-.++|+..-|
T Consensus 211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CceeeeecccCceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 11266777777777777777766677777 554 4445554 22 23455566666655
No 42
>PF13173 AAA_14: AAA domain
Probab=98.71 E-value=7.4e-08 Score=83.53 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=81.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
-+++.|.|+.|+||||++++++++. . .-..++|+++............ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~~-------------------~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADPD-------------------LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhhh-------------------hHHHHHHhh
Confidence 4789999999999999999999987 1 3456888887765542211100 112222223
Q ss_pred CCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhccc------CCcceEeeccCChhh
Q 037310 85 KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQM------EAHKSFEVECLGYDD 147 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~------~~~~~~~l~~l~~~e 147 (656)
..++.+++||+++...+|......+.... +..+|++|+.+......- +....++|.||+-.|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 34778899999988877777666555554 568899999887665321 223467899998766
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=3.8e-08 Score=86.00 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCC--CCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDT--PNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
+-+++.|+|++|+|||+++..++++.... ...-..++|+.+....+...+...++.+++..... .....+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45689999999999999999999876100 00134577999888889999999999999875543 345666667777
Q ss_pred HhhCCc-cEEEEEeCCcCc-h--hhhhhccccCCCCCCCcEEEEEcee
Q 037310 82 KVMKRK-KFVLLLDDIWEP-V--DLAQVGLLVPSATRASNKVVFTTLE 125 (656)
Q Consensus 82 ~~l~~~-~~LlVlDdv~~~-~--~~~~~~~~l~~~~~~~~~iliTTR~ 125 (656)
+.+... ..+||+|+++.. . .++.+..... . .+..+|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~-~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--E-SNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--S-CBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--C-CCCeEEEEECh
Confidence 777554 459999999654 1 1222322222 2 56666666555
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=1.2e-09 Score=111.08 Aligned_cols=146 Identities=28% Similarity=0.374 Sum_probs=117.3
Q ss_pred eeEeecchhhHhhhc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 345 VTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 345 ~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
+..+.+..|.++.++ .+.++..|..|+++.|+++.++.. ++.+ -|++|-+++| ..+.+|..++.+.+|..||.+.|
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecC-ccccCCcccccchhHHHhhhhhh
Confidence 444555556666665 557888888899999988888776 4444 4889988888 67778888998889999999999
Q ss_pred CCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
.+..+|..++.+.+|+.|.+..|++..+|++ +..| .|..|+++.|+ ...++..+.+|++|+.|.+
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScNk-------------is~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCNK-------------ISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccCc-------------eeecchhhhhhhhheeeee
Confidence 9999999999999999999999988899887 6644 48899998887 5567788888999999999
Q ss_pred Eecch
Q 037310 504 TLESF 508 (656)
Q Consensus 504 ~~~~~ 508 (656)
.+++.
T Consensus 242 enNPL 246 (722)
T KOG0532|consen 242 ENNPL 246 (722)
T ss_pred ccCCC
Confidence 88764
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.6e-09 Score=101.89 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=101.6
Q ss_pred CCCCCcceEeccccCCcccch-hHHhcCCcccEEEccCCCCCcc---CccccCCcccCcEEeCCCCCCcccCcc--ccCC
Q 037310 362 SSSPHLQTLFLGSNDLNEVNR-DFFQFMASLRVLTLSDGSLPGH---LLTGISNLVSLQHLDPARSKIRRLPME--LKYL 435 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~---~p~~~~~L~~L~~L~l~~~~~~~lp~~--~~~l 435 (656)
+++.+|+.+.+..+.+...+. .....+++++.|||+.| +... +-+-...|++|+.|+++.|.+...-.+ ...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~- 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL- 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh-
Confidence 556667777776665554432 23455666666666666 2221 122344556666666666554432211 223
Q ss_pred CCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhh
Q 037310 436 VHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLL 515 (656)
Q Consensus 436 ~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 515 (656)
+++|+.|.+++|.. .......-+..+++|..|.+..+......+
T Consensus 196 -----------------------l~~lK~L~l~~CGl-----------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-- 239 (505)
T KOG3207|consen 196 -----------------------LSHLKQLVLNSCGL-----------SWKDVQWILLTFPSLEVLYLEANEIILIKA-- 239 (505)
T ss_pred -----------------------hhhhheEEeccCCC-----------CHHHHHHHHHhCCcHHHhhhhcccccceec--
Confidence 44445555555542 122233333344455555554432100000
Q ss_pred cCcccccccCCceeecccccceEE--EeccccccHHHH-HHhCC--CCCCccc-----cccCCCccEEEEeCCchhhHHh
Q 037310 516 DSPRLQSLSTPSLCLKHCCQSELL--VFNQRRSLLQNI-CISYS--KLKHLTW-----LIVAPNLKHVRISSCLDLEEII 585 (656)
Q Consensus 516 ~~~~~~~~ll~~L~l~~~~~~~~~--~~~~~~~~L~~L-l~~~~--~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~~ 585 (656)
...+-...+ +.|+|+++.....+ .....++.|+.| +..+. .+..++. ...+++|++|+++.++..+ +.
T Consensus 240 ~~~~i~~~L-~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~ 317 (505)
T KOG3207|consen 240 TSTKILQTL-QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WR 317 (505)
T ss_pred chhhhhhHH-hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-cc
Confidence 111112224 66777777666533 455667778888 66643 2222332 3468999999999887522 21
Q ss_pred cccccCCcCcccccCcccccccccccccC
Q 037310 586 SVEKLGEVSPEVMHNLIPLARIEYLILED 614 (656)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 614 (656)
.. ..+..+++|+.|.+..
T Consensus 318 sl-----------~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 318 SL-----------NHLRTLENLKHLRITL 335 (505)
T ss_pred cc-----------chhhccchhhhhhccc
Confidence 10 2445566677666543
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=2.8e-07 Score=88.72 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
..+.|+|++|+|||.||+.+++.. ... . ..+.|+++.. ....+.. . +. .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~-~-~~~~y~~~~~------~~~~~~~----------------~---~~-~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQA-G-RSSAYLPLQA------AAGRLRD----------------A---LE-AL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHc-C-CcEEEEeHHH------hhhhHHH----------------H---HH-HH-
Confidence 458999999999999999998876 222 2 3566776422 1111110 1 11 11
Q ss_pred CccEEEEEeCCcCch---hh-hhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPV---DL-AQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
.+.-+||+||++... .+ ..+...+......+..+|+|++...- ..+......+++++++.++-.+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 233489999997432 11 12222222211145668998886332 222233457899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.+++.......+ ++....|++.++|....+
T Consensus 172 ~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 987765432332 344778888888765443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=9.7e-09 Score=96.46 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=92.6
Q ss_pred CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCe
Q 037310 361 SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKR 440 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 440 (656)
...+..|+++++++|.++.+..+ ..-.+.+|+|+++.|.+.. . ..+..|++|+.|||++|.+.++..+-.++-|...
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhh-hhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34566777888888877776554 5667788888888884332 2 2477778888888888877777666667777888
Q ss_pred EecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 441 LNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 441 L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
|.+..|.++++.- +.++-+|..|++++|++ ..-.-...+++|+.|+.+.+.+++.
T Consensus 357 L~La~N~iE~LSG--L~KLYSLvnLDl~~N~I-----------e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQNKIETLSG--LRKLYSLVNLDLSSNQI-----------EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhhhHhhhhh--hHhhhhheeccccccch-----------hhHHHhcccccccHHHHHhhcCCCc
Confidence 8888887777764 77788888888888773 1222345577777777777776653
No 48
>PRK09087 hypothetical protein; Validated
Probab=98.54 E-value=3.8e-07 Score=87.05 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=89.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.+.|+|++|+|||+|++.++... . ..|++.. .+...+...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~~~~---------------------- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAANAAA---------------------- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHHhhh----------------------
Confidence 3568999999999999999998764 1 1244321 11111211110
Q ss_pred CCccEEEEEeCCcCch-hhhhhccccCCCCCCCcEEEEEceeh---------hhhcccCCcceEeeccCChhhhHHHHHH
Q 037310 85 KRKKFVLLLDDIWEPV-DLAQVGLLVPSATRASNKVVFTTLEF---------EIGGQMEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~~~iliTTR~~---------~~~~~~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+ -++++||++... +-+.+...+......|..+|+|++.. ....++.....+++++++.++-.+++.+
T Consensus 88 -~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 -E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred -c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1 278889996431 11223333322222467789888742 2333445556899999999999999999
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 155 KVGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
++.......+ ++....|++.+.|...++..+-
T Consensus 165 ~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 9876543333 4457888888888776655433
No 49
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=4.7e-07 Score=87.36 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=91.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
+.+.+.|+|++|+|||+||+.+++.. . ..-..+.|+++...... ..+..+.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~~----------------------~~~~~~~~~-- 96 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAWF----------------------VPEVLEGME-- 96 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhhh----------------------hHHHHHHhh--
Confidence 34578999999999999999999876 2 12235667766421100 001111111
Q ss_pred hCCccEEEEEeCCcCc---hhhh-hhccccCCCCC-CCcEEEEEceehhh---------hcccCCcceEeeccCChhhhH
Q 037310 84 MKRKKFVLLLDDIWEP---VDLA-QVGLLVPSATR-ASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSW 149 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~---~~~~-~~~~~l~~~~~-~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~ 149 (656)
+ .-++++||++.. .+|+ .+...+..... ...++|+||+.... ..++.....++++++++++-.
T Consensus 97 --~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 97 --Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred --h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 1 237999999653 2222 12222222111 23478898886532 233344568999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 037310 150 KLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGR 190 (656)
Q Consensus 150 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 190 (656)
+++.+++.......+ ++....|++.+.|....+..+-.
T Consensus 174 ~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 174 QALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 999886655432333 44578888888876655444433
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=2.7e-08 Score=104.96 Aligned_cols=108 Identities=27% Similarity=0.372 Sum_probs=56.1
Q ss_pred cCCCCCCcceEeccccCCcccchhHHhcCC-cccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCC
Q 037310 360 ESSSSPHLQTLFLGSNDLNEVNRDFFQFMA-SLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHL 438 (656)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L 438 (656)
....++.++.|++.++.++.+++. ...++ +|+.|++++| ....+|..+..+++|+.|++++|++..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 334445555555555555555443 23332 5555555555 34444444555555555555555555555544455555
Q ss_pred CeEecCCccccccChhhhcCCCCCcEEEeeec
Q 037310 439 KRLNLEFTRLTRIPQEVISNLKMLRVLRMYEC 470 (656)
Q Consensus 439 ~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~ 470 (656)
+.|++++|++..+|.. +..+..|++|.+++|
T Consensus 189 ~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 189 NNLDLSGNKISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hheeccCCccccCchh-hhhhhhhhhhhhcCC
Confidence 5555555555555553 334444555555555
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.51 E-value=4.7e-06 Score=89.60 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.+.|+|++|+||||+|+.++++. .++ ++-++.+...+...+ ..++....... ...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i-~~~i~~~~~~~----------------sl~ 95 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI-ERVAGEAATSG----------------SLF 95 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH-HHHHHHhhccC----------------ccc
Confidence 5789999999999999999999986 233 333444433332222 22222211100 001
Q ss_pred CCccEEEEEeCCcCchh------hhhhccccCCCCCCCcEEEEEceehh-hhc--ccCCcceEeeccCChhhhHHHHHHH
Q 037310 85 KRKKFVLLLDDIWEPVD------LAQVGLLVPSATRASNKVVFTTLEFE-IGG--QMEAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~iliTTR~~~-~~~--~~~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
+.++.+||+|+++.... ...+...+.. ....+|+|+.+.. ... .......+++.+++.++....+.+.
T Consensus 96 ~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 96 GARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred CCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHH
Confidence 13678999999986532 3334443432 3344555554422 111 1123356889999999999999888
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
+.......+ .+....|++.++|....+..
T Consensus 173 ~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 173 CRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 765543332 45588999999997655443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=9.5e-08 Score=100.77 Aligned_cols=193 Identities=25% Similarity=0.222 Sum_probs=136.1
Q ss_pred ceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcc-cCcEEeCCCCCCcccCccccCCCCCCeEecCCc
Q 037310 368 QTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLV-SLQHLDPARSKIRRLPMELKYLVHLKRLNLEFT 446 (656)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 446 (656)
..+....+.+...... ...++.+..|++.++ ....+|+..+.+. +|+.|++++|.+..+|..++.+++|+.|+++.|
T Consensus 96 ~~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 3577777776333322 556688999999999 6777887888885 999999999999999988999999999999999
Q ss_pred cccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCC
Q 037310 447 RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTP 526 (656)
Q Consensus 447 ~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~ 526 (656)
++.++|.. .+.+++|+.|++++|. ....+.....+..|+.+.+..+.. ............+ .
T Consensus 174 ~l~~l~~~-~~~~~~L~~L~ls~N~-------------i~~l~~~~~~~~~L~~l~~~~N~~---~~~~~~~~~~~~l-~ 235 (394)
T COG4886 174 DLSDLPKL-LSNLSNLNNLDLSGNK-------------ISDLPPEIELLSALEELDLSNNSI---IELLSSLSNLKNL-S 235 (394)
T ss_pred hhhhhhhh-hhhhhhhhheeccCCc-------------cccCchhhhhhhhhhhhhhcCCcc---eecchhhhhcccc-c
Confidence 99999985 5589999999999998 333344444555678888886631 1111111111223 4
Q ss_pred ceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchh
Q 037310 527 SLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 527 ~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 581 (656)
.|.+.++....+......+++++.| +.++ .+..++.++.+.+|++|+++++...
T Consensus 236 ~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 236 GLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccCCceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 4444554444434455566677787 6663 4555555778888888888876554
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=3.9e-06 Score=88.38 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH-
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK- 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 82 (656)
..+.+.|+|++|+||||+|+.+++.. ...| ..++... .....+ +.+.. ....
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~---~~l~a~~-~~~~~i-r~ii~-------------------~~~~~ 87 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT---DAPF---EALSAVT-SGVKDL-REVIE-------------------EARQR 87 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEeccc-ccHHHH-HHHHH-------------------HHHHh
Confidence 35578889999999999999999876 2222 1222111 011111 11111 1111
Q ss_pred hhCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE--Eceehhhh---cccCCcceEeeccCChhhhHHHHHHH
Q 037310 83 VMKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF--TTLEFEIG---GQMEAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili--TTR~~~~~---~~~~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
...+++.+|++|+++... ..+.+...+. .+..++| ||.+.... ........+.+.+++.++..+++.+.
T Consensus 88 ~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 88 RSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 114578899999998653 2333333332 3344444 23332211 11122357899999999999999987
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
+.........-.++....|++.++|.+..+.-+.
T Consensus 164 l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 164 LEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 6442101101224557889999999987654443
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.9e-08 Score=97.39 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=83.5
Q ss_pred cCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCc--cccccCCC
Q 037310 494 SLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHL--TWLIVAPN 569 (656)
Q Consensus 494 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~--~~l~~l~~ 569 (656)
.+.+|+.|.++.|+.. ...+.........+ +.|.+..|.+.. -.....-+..|+.| |+++..+... +-.+.||.
T Consensus 195 ~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS-WKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCC-HHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 5678889999988864 44444444445556 888888885333 22234455689999 9987766655 46789999
Q ss_pred ccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcC--CCCCCCChhHHH
Q 037310 570 LKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHS--SALPFPHLQSLR 635 (656)
Q Consensus 570 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~ 635 (656)
|..|+++.|.. .++-.. ++.. -+-...||+|++|.+...+ +..|++ ....+++|++|.
T Consensus 273 L~~Lnls~tgi-~si~~~----d~~s--~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 273 LNQLNLSSTGI-ASIAEP----DVES--LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hhhhhccccCc-chhcCC----Cccc--hhhhcccccceeeecccCc-cccccccchhhccchhhhhh
Confidence 99999998874 333220 0000 0124689999999999843 444433 122355666654
No 55
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=6.1e-07 Score=86.39 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh--hhHHHHHHHHHHHhCCCCCCCCccc----HHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD--LQLKRIQDCIARKIGLFSRSWNSKS----LLEKAE 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~ 78 (656)
-..++|.|++|+|||||+++++++. ... +|+.+.|+.+... .+..++++.+...+-....+..... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999987 333 8999999986655 7888888888433322221111111 111122
Q ss_pred HHHHh-hCCccEEEEEeCCcC
Q 037310 79 DIFKV-MKRKKFVLLLDDIWE 98 (656)
Q Consensus 79 ~l~~~-l~~~~~LlVlDdv~~ 98 (656)
..... -.++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22221 257999999999943
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.45 E-value=1.2e-05 Score=78.14 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
+..+-+.+||++|+||||||+.++..- +++- ..||..+.......-.+.|.++.. -..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq-----------------~~~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ-----------------NEK 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH-----------------HHH
Confidence 456778899999999999999999975 3322 456666554433333344443321 122
Q ss_pred hhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEE--Eceehhhhcc---cCCcceEeeccCChhhhHHHHHHHhc
Q 037310 83 VMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVF--TTLEFEIGGQ---MEAHKSFEVECLGYDDSWKLFEVKVG 157 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~ili--TTR~~~~~~~---~~~~~~~~l~~l~~~ea~~L~~~~~~ 157 (656)
.+.++|.+|.+|.|+.- .-.+....+|... +|.-++| ||.++.+.-. ...-.++.|+.|+.++...++.+...
T Consensus 218 ~l~krkTilFiDEiHRF-NksQQD~fLP~VE-~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRF-NKSQQDTFLPHVE-NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhcceeEEEeHHhhhh-hhhhhhcccceec-cCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 34678999999999532 1222334566665 7777777 6666654221 23345789999999999999988543
Q ss_pred ---CCC---CCCCC----ChHHHHHHHHHHcCCCch
Q 037310 158 ---RDT---LDSHP----DIPELAKTVVKECGGLPL 183 (656)
Q Consensus 158 ---~~~---~~~~~----~~~~~~~~i~~~~~g~Pl 183 (656)
+.. ...+. -.+.+...++..|.|-..
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111 11111 123456777788888653
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=5.7e-07 Score=99.51 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=41.0
Q ss_pred ccEEEccCCCCCccCccccCCcccCcEEeCCCCCCc-ccCccccCCCCCCeEecCCccccc-cChhhhcCCCCCcEEEee
Q 037310 391 LRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIR-RLPMELKYLVHLKRLNLEFTRLTR-IPQEVISNLKMLRVLRMY 468 (656)
Q Consensus 391 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~-l~~~~l~~l~~L~~L~l~ 468 (656)
++.|+|++|.+.+.+|..++++++|+.|+|++|.+. .+|..++.+++|+.|++++|++.. +|.. ++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 444555555444455555555555555555555554 444455555555555555554442 3332 5555555555555
Q ss_pred ecC
Q 037310 469 ECG 471 (656)
Q Consensus 469 ~~~ 471 (656)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 554
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.5e-07 Score=69.53 Aligned_cols=59 Identities=32% Similarity=0.483 Sum_probs=43.9
Q ss_pred ccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 413 VSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 413 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
++|++|++++|++..+|+ .+.++++|++|++++|.+..++++.+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777777777775 46777777777777777777777667777777777777775
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.3e-07 Score=69.79 Aligned_cols=59 Identities=32% Similarity=0.431 Sum_probs=34.4
Q ss_pred CcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
+|++|++++|.++.++++.|..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 55666666666666665556666666666666654433334455666666666666554
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.5e-09 Score=99.37 Aligned_cols=178 Identities=22% Similarity=0.183 Sum_probs=105.5
Q ss_pred cCcEEeCCCCCCc--ccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccc-cHH
Q 037310 414 SLQHLDPARSKIR--RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREV-LVV 490 (656)
Q Consensus 414 ~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~ 490 (656)
.||+|||+...++ .+---++.+++|+.|.+.++.+.+--...+.+-.+|+.|+++.|+. .+.. .-.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-----------~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-----------FTENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc-----------cchhHHHH
Confidence 4888888888766 3434467888899999988877664444477888899999999883 2222 223
Q ss_pred HhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceE----EEeccccccHHHH-HHhCCCCCC--ccc
Q 037310 491 EILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSEL----LVFNQRRSLLQNI-CISYSKLKH--LTW 563 (656)
Q Consensus 491 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~----~~~~~~~~~L~~L-l~~~~~~~~--~~~ 563 (656)
-+.+++.|..|+++||....-..-.........+ +.|+++||...-. ..-...+|+|.+| +++|..+++ +..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l-~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL-TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhh-hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 4678888999999988642211101111112223 6666666654321 1112244566666 666555443 123
Q ss_pred cccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCC
Q 037310 564 LIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDL 615 (656)
Q Consensus 564 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 615 (656)
+..|+.|++|.++.|..+..-.- -.+...|+|.+|++.+|
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~------------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETL------------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchheeeehhhhcCCChHHe------------eeeccCcceEEEEeccc
Confidence 44667777777777665432211 14556677777776665
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.38 E-value=1.6e-06 Score=83.62 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.+.|+|++|+|||+||+.+++... .... .+.+++...... . + ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~------~----~--------------------~~ 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLL------A----F--------------------DF 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHH------H----H--------------------hh
Confidence 345789999999999999999998751 1122 344555432110 0 0 01
Q ss_pred hCCccEEEEEeCCcCchh--hhhhccccCCCCCCCc-EEEEEceehhhhc--------ccCCcceEeeccCChhhhHHHH
Q 037310 84 MKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASN-KVVFTTLEFEIGG--------QMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~-~iliTTR~~~~~~--------~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
....-++|+||++.... ...+...+......+. .+++|++...... ++.....++++++++++-..++
T Consensus 88 -~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 -DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred -cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 12334689999975422 2223333322111333 4666666533221 2222357899999998877777
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
.+.........+ ++....+++...|.+..+..+...+
T Consensus 167 ~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 765544332222 3457888888999988776666554
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=8.1e-06 Score=84.14 Aligned_cols=174 Identities=11% Similarity=0.066 Sum_probs=91.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc-eEEEEEeCChhhHHHHHHHHH------HHhCCC--CCCCCcccHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFD-LVIWVVVSKDLQLKRIQDCIA------RKIGLF--SRSWNSKSLLE 75 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~------~~l~~~--~~~~~~~~~~~ 75 (656)
.+.+.|+|++|+||||+|+.+++.. . ...+. ..++++++..... ....+. ...+.. ..........+
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFDQ--GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKH 111 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhhc--chhhhhcCcchhhhhhhhhhhccchHHHHHH
Confidence 3467899999999999999999876 2 12222 2345554321100 000000 000000 00000001111
Q ss_pred HHHHHHHhh--CCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhccc-CCcceEeeccCChhhhH
Q 037310 76 KAEDIFKVM--KRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQM-EAHKSFEVECLGYDDSW 149 (656)
Q Consensus 76 ~~~~l~~~l--~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~~-~~~~~~~l~~l~~~ea~ 149 (656)
..+...... .+.+-++|+||++.... .+.+...+.... ..+++|+|+... .+.... .....+++.+++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~ 190 (337)
T PRK12402 112 VLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-RTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELV 190 (337)
T ss_pred HHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-CCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHH
Confidence 111111211 23455899999975532 333433333333 446677766443 222111 22346888999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 150 KLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 150 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
+++.+.+.......+ .+....+++.++|.+..+.
T Consensus 191 ~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 191 DVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 999887765442322 4557889999988765443
No 63
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=1.2e-06 Score=83.29 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
...+.|+|+.|+|||.|.+++++.. .....-..++|++.. +....+...+.. . ....+...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~~~------~f~~~~~~~~~~-------~----~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLSAE------EFIREFADALRD-------G----EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEEHH------HHHHHHHHHHHT-------T----SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH-HhccccccceeecHH------HHHHHHHHHHHc-------c----cchhhhhhh
Confidence 3468999999999999999999986 221122356777543 344444444421 1 122344444
Q ss_pred CCccEEEEEeCCcCchhh----hhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhHHH
Q 037310 85 KRKKFVLLLDDIWEPVDL----AQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~~----~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~~L 151 (656)
. .-=+|++||++..... +.+...+......|.++|+|++.... ..++...-.+++++.+.++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3447899999754221 12222222222256688999866432 12223345799999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
+.+.+.......+ ++.+.-|++.+.+..-.+.-+
T Consensus 175 l~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 9998876653332 445677777776655544433
No 64
>PRK05642 DNA replication initiation factor; Validated
Probab=98.36 E-value=1.9e-06 Score=83.01 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
..+.|+|++|+|||.||+.+++.. ..+ -..++|++... +... . ..+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~--~~~v~y~~~~~------~~~~----------------~----~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQR--GEPAVYLPLAE------LLDR----------------G----PELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhC--CCcEEEeeHHH------HHhh----------------h----HHHHHhhh
Confidence 568999999999999999999876 212 23567776532 1110 0 11222222
Q ss_pred CccEEEEEeCCcCc---hhhh-hhccccCCCCCCCcEEEEEceehhhh---------cccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEP---VDLA-QVGLLVPSATRASNKVVFTTLEFEIG---------GQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~~~iliTTR~~~~~---------~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+-. +||+||++.. ..+. .+...+......|..+|+|++..... .++.....+++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6889999632 2222 23333332222456788888764421 11222356889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGR 190 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 190 (656)
.+++.......+ ++....|++.+.|....+..+-.
T Consensus 176 ~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 176 QLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 866654332222 45577788888776655444433
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7.1e-06 Score=84.74 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=59.7
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.... ++.+...+.... ...++|++|.+. .+... ......+++++++.++..+.+.+.+.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~-~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPP-QHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567999999986643 444444444333 455566655443 22211 122357899999999999998887755431
Q ss_pred CCCCChHHHHHHHHHHcCCCchH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.. .++.+..|++.++|.|..
T Consensus 197 ~i---~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 DT---DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CC---CHHHHHHHHHHcCCCHHH
Confidence 22 234577899999998753
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=3.9e-06 Score=88.60 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-+.|+|+.|+|||.|++++++.. .....-..++|++. .++...+...+... ......+.+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~~------~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMSG------DEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 458899999999999999999865 21122234556644 34445555444320 012233444443
Q ss_pred CccEEEEEeCCcCch----hhhhhccccCCCCCCCcEEEEEceehh---------hhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPV----DLAQVGLLVPSATRASNKVVFTTLEFE---------IGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~~~iliTTR~~~---------~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+.-+||+||++... ..+.+...+......+..||+|+.... +..+....-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34478999996432 122333333222214456888866432 2222233446789999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
.+++...... ..-.++....|++.++|.|..+.-+...+
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988654311 12235668899999999998776665433
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=5.9e-08 Score=91.30 Aligned_cols=129 Identities=26% Similarity=0.367 Sum_probs=105.9
Q ss_pred CcccceeEeecchhhHhhhcc-CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 340 GLWKEVTRMSLMQIRIRRLLE-SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
..|+.+..+++++|.+..+-+ .+-.+.++.|++++|.+..+.. +..+++|..|||++| ....+-.--.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 345678999999999988864 4668899999999999888765 788999999999999 444433333478889999
Q ss_pred eCCCCCCcccCccccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCC
Q 037310 419 DPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 419 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~ 472 (656)
.|++|.+..+ .++.++.+|.+|++++|+++.+.. ..|++++-|+++.+.+|..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999999888 458999999999999998876543 2288999999999999984
No 68
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.33 E-value=1.3e-06 Score=87.65 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh--hHHHHHHHHHHHhCCCCCCCCcc-cHH---HHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIARKIGLFSRSWNSK-SLL---EKAED 79 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~---~~~~~ 79 (656)
+..+|+|++|+||||||+++++.. ... +|+.+.||.+.... +..++++.+...+-..+.+.... ... .....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I-~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSI-TTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHH-Hhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999987 333 89999999887665 77788888864332222221211 111 11111
Q ss_pred HHHh-hCCccEEEEEeCCc
Q 037310 80 IFKV-MKRKKFVLLLDDIW 97 (656)
Q Consensus 80 l~~~-l~~~~~LlVlDdv~ 97 (656)
.... ..+++++|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 1111 36799999999994
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.1e-05 Score=85.36 Aligned_cols=172 Identities=14% Similarity=0.113 Sum_probs=91.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~l~ 81 (656)
.+.+.++|+.|+||||+|+.+++.. .-....+ ...++ .-..+..|...-.... +.......++..+.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~---~~PCG----~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe 109 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVT---SQPCG----VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLE 109 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCccCCC---CCCCc----ccHHHHHHhcCCCceEEEecccccccHHHHHHHHH
Confidence 4567899999999999999998876 1111110 00011 0111111111000000 0000111222222222
Q ss_pred Hh----hCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceehh-hhc-ccCCcceEeeccCChhhhHHHHH
Q 037310 82 KV----MKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEFE-IGG-QMEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 82 ~~----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~~-~~~-~~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.. ..++.-++|||+++.... ++.+...+..-. ...++|++|++.. +.. .......+.++.++.++..+.+.
T Consensus 110 ~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 110 RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHH
Confidence 11 134556899999986643 444544443332 4566666666543 221 11223578999999999999999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCc-hHHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLP-LALITV 188 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 188 (656)
+.+....... .++....|++.++|.. -++.++
T Consensus 189 ~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 189 RILGEERIAF---EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 8876544222 2445788999998865 455553
No 70
>PF14516 AAA_35: AAA-like domain
Probab=98.33 E-value=0.00013 Score=74.18 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-----hhHH----HHHHHHHHHhCCCCCCC-----Cc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-----LQLK----RIQDCIARKIGLFSRSW-----NS 70 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~----~~~~~i~~~l~~~~~~~-----~~ 70 (656)
-..+.|.|+-.+|||+|...+.+.. ... .+ .++++++... .+.. .+...+.++++....-. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l-~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERL-QQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHH-HHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 4578999999999999999998887 322 44 3457775431 2333 34455555554432100 00
Q ss_pred ccHHHHHHHHHHhh---CCccEEEEEeCCcCchh----hhhhccccCCCC-------CCCcE--EEEEceehhhh-cc--
Q 037310 71 KSLLEKAEDIFKVM---KRKKFVLLLDDIWEPVD----LAQVGLLVPSAT-------RASNK--VVFTTLEFEIG-GQ-- 131 (656)
Q Consensus 71 ~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~-------~~~~~--iliTTR~~~~~-~~-- 131 (656)
........-+.+.+ .+++.+|+||++|.... .+.+...+.... .-..- |++.+...... ..
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~ 187 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQ 187 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCC
Confidence 11122223333332 36899999999985422 112211111110 01112 23322221111 11
Q ss_pred --cCCcceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCC
Q 037310 132 --MEAHKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASK 195 (656)
Q Consensus 132 --~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 195 (656)
......++|++|+.+|+..|+.++-..- . ....++|...+||+|.-+..++..+...
T Consensus 188 SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 188 SPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1123468999999999999988763221 1 2228899999999999999999998663
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.32 E-value=2.3e-05 Score=85.56 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCC--CCCCc--eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDT--PNDFD--LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
.++.|+|++|+|||+.++.|+++.... ....+ .+++|++....+...+...|..++...... ......+....+.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF 860 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLF 860 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHH
Confidence 577899999999999999998765211 12222 367888877777888888888888433221 2223344555555
Q ss_pred HhhC---CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEE--Eceehh--------hhcccCCcceEeeccCChh
Q 037310 82 KVMK---RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVF--TTLEFE--------IGGQMEAHKSFEVECLGYD 146 (656)
Q Consensus 82 ~~l~---~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili--TTR~~~--------~~~~~~~~~~~~l~~l~~~ 146 (656)
..+. +...+||||+++.... -+.+...+......+++|+| +|.... +..++. ...+..++.+.+
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaE 939 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGD 939 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHH
Confidence 5442 2346999999975421 11121111111113344333 333221 122222 223677999999
Q ss_pred hhHHHHHHHhcC
Q 037310 147 DSWKLFEVKVGR 158 (656)
Q Consensus 147 ea~~L~~~~~~~ 158 (656)
+-.+++.+++..
T Consensus 940 QL~dILk~RAe~ 951 (1164)
T PTZ00112 940 EIEKIIKERLEN 951 (1164)
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=5.6e-06 Score=84.09 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFD-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
+.+-+.++|++|+||||+|+.+++.. - ...|. .++-++.+....... .+.+.+.+......
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l-~-~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~--------------- 94 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL-L-GPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKVT--------------- 94 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH-h-cccCccceeeecccccccHHH-HHHHHHHHHhcccc---------------
Confidence 34457789999999999999999886 1 11222 222233332222211 11111111100000
Q ss_pred hhCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhccc-CCcceEeeccCChhhhHHHHHHHhcC
Q 037310 83 VMKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQM-EAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~~-~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
.-.++.-++|+|+++.... .+.+...+.... ..+++++++... .+.... .....++++++++++..+.+.+.+..
T Consensus 95 ~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 95 LPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-NTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred CCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-CCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 0024567999999986633 223333333222 445666655432 221111 11246899999999999999888765
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCch
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.....+ ++....|++.++|...
T Consensus 174 egi~i~---~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 174 EKVPYV---PEGLEAIIFTADGDMR 195 (319)
T ss_pred cCCCCC---HHHHHHHHHHcCCCHH
Confidence 442322 3457889999998653
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=7.2e-06 Score=90.59 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|||+++.. ...+.+...+-.-. ...++|++|.+ ..+... ......|++++++.++..+.+.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 467789999999765 33444444443322 44555554444 433211 12235799999999999999988776533
Q ss_pred CCCCCChHHHHHHHHHHcCCCchHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.. -.++.+..|++.++|.|.-+
T Consensus 196 I~---~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 196 LP---FEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHH
Confidence 12 12455788999999988533
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.5e-05 Score=85.14 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh-
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV- 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 83 (656)
.+.+.++|++|+||||+|+.+++.. .-.+.++...|.+.+.. .+..-.+.-...+.. . .....++. +.+...
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~~--~--~~~~vd~i-R~l~~~~ 108 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCL-AVRRGAHPDVLEIDA--A--SNNSVEDV-RDLREKV 108 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhH-HHhcCCCCceEEecc--c--ccCCHHHH-HHHHHHH
Confidence 3567899999999999999998876 21111211222211000 000000000000000 0 01111111 112111
Q ss_pred ----hCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEce-ehhhhccc-CCcceEeeccCChhhhHHHHHHH
Q 037310 84 ----MKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTL-EFEIGGQM-EAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 84 ----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR-~~~~~~~~-~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
..+++-++|+|+++.. ..++.+...+.... ..+.+|++|. ...+.... .....+++.+++.++..+.+.+.
T Consensus 109 ~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i 187 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-EHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRL 187 (504)
T ss_pred hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-CCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHH
Confidence 2356678999999755 33555555554443 4445455444 33332211 22457899999999999999998
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
+....... .++.+..|++.++|.+.-+
T Consensus 188 ~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 188 LEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 76554222 2455788999999988544
No 75
>PRK06620 hypothetical protein; Validated
Probab=98.26 E-value=3.6e-06 Score=79.62 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+.+.|+|++|+|||+||+.+++.. .. .++... .. . + ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~~---~~-------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKDI---FF-------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcchh---hh-------------------c---h-------hHH-
Confidence 568999999999999999988865 11 121100 00 0 0 001
Q ss_pred CccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhh-------hcccCCcceEeeccCChhhhHHHHHHHhcC
Q 037310 86 RKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEI-------GGQMEAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~-------~~~~~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
+..-++++||++..++ ..+...+......|..+|+|++.... ..++...-.+++++++.++-.+++.+.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1234688999974332 12222222222256688888876443 222333447999999999988888887764
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.....+ ++....|++.+.|.-..+
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCHHHH
Confidence 332232 344777777777654433
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.26 E-value=2.2e-05 Score=73.22 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=57.6
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+.+-++|+||++... ..+.+...+.... ..+.+|++|++. .+... ......+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C----
Confidence 566789999997653 3445555555433 456666666543 22111 122357899999999999888876 1
Q ss_pred CCCCChHHHHHHHHHHcCCCch
Q 037310 162 DSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+ ++.+..|++.++|.|.
T Consensus 169 -i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred -CC---HHHHHHHHHHcCCCcc
Confidence 11 3558899999999885
No 77
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=5.7e-06 Score=73.68 Aligned_cols=107 Identities=21% Similarity=0.084 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.+.|+|++|+|||++|+.+++.. . ..-..++++..............+... .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELA 80 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhh
Confidence 35688999999999999999999987 2 222346676655433322221111100 011111222
Q ss_pred hCCccEEEEEeCCcCc--hhhhhhccccCCCC-----CCCcEEEEEceehh
Q 037310 84 MKRKKFVLLLDDIWEP--VDLAQVGLLVPSAT-----RASNKVVFTTLEFE 127 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~-----~~~~~iliTTR~~~ 127 (656)
...++.++|+||++.. .....+...+.... ..+..+|+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3457789999999753 12222222222211 15667777777654
No 78
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.5e-06 Score=94.48 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=90.8
Q ss_pred CcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCc-ccCccccCCCCCCeEecC
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIR-RLPMELKYLVHLKRLNLE 444 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~ 444 (656)
.++.|++++|.+.+..+..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998877777999999999999999888899999999999999999999988 788899999999999999
Q ss_pred Ccccc-ccChhhhcC-CCCCcEEEeeecC
Q 037310 445 FTRLT-RIPQEVISN-LKMLRVLRMYECG 471 (656)
Q Consensus 445 ~~~~~-~l~~~~l~~-l~~L~~L~l~~~~ 471 (656)
+|++. .+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 99776 57765 554 3467788888776
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=2.2e-05 Score=80.16 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=88.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce-EEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL-VIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
..+.+.|+|++|+||||+|+.+++.. .. ..+.. .+-++.+.......+...+...... ..
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l-~~-~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~-~~---------------- 97 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALAREL-YG-EDWRENFLELNASDERGIDVIRNKIKEFART-AP---------------- 97 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-cC-CccccceEEeccccccchHHHHHHHHHHHhc-CC----------------
Confidence 34567999999999999999999886 11 12211 1122222211111111111111000 00
Q ss_pred hhCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcC
Q 037310 83 VMKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
.....+-++++|+++.... ...+...+.... ..+.+|+++... .+... ......+++++++.++....+.+.+..
T Consensus 98 ~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 98 VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH
Confidence 0013466899999975532 334444444433 445666655332 22111 112346899999999999999888765
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.....+ ++....+++.++|.+.-+
T Consensus 177 ~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 177 EGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred cCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 542222 445888999999987553
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3e-08 Score=93.28 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=123.8
Q ss_pred CCCCeEecCCccccccC-hhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhh
Q 037310 436 VHLKRLNLEFTRLTRIP-QEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRML 514 (656)
Q Consensus 436 ~~L~~L~l~~~~~~~l~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 514 (656)
+.||+||++...++.-. ...++.+.+|+.|.+.|+. ..+.....+..=.+|+.|++++++.-....+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~------------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR------------LDDPIVNTIAKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc------------cCcHHHHHHhccccceeeccccccccchhHH
Confidence 35999999998665311 2337788999999999998 4677788888889999999998876444444
Q ss_pred hcCcccccccCCceeecccccce--E--EEeccccccHHHH-HHhCCCCCCc---ccc-ccCCCccEEEEeCCchhhHHh
Q 037310 515 LDSPRLQSLSTPSLCLKHCCQSE--L--LVFNQRRSLLQNI-CISYSKLKHL---TWL-IVAPNLKHVRISSCLDLEEII 585 (656)
Q Consensus 515 ~~~~~~~~~ll~~L~l~~~~~~~--~--~~~~~~~~~L~~L-l~~~~~~~~~---~~l-~~l~~L~~L~l~~~~~~~~~~ 585 (656)
.-...-+..+ ..|+++.|.... + .... --++|++| ++||...-.. +.+ ..+|+|.+|+|++|..+....
T Consensus 253 ~ll~~scs~L-~~LNlsWc~l~~~~Vtv~V~h-ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 253 QLLLSSCSRL-DELNLSWCFLFTEKVTVAVAH-ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHHHHhhhhH-hhcCchHhhccchhhhHHHhh-hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 3334445556 888999987654 1 1111 12489999 9998754433 333 378999999999998877643
Q ss_pred cccccCCcCcccccCcccccccccccccCCcch-hhhcCCCCCCCChhHHHHH
Q 037310 586 SVEKLGEVSPEVMHNLIPLARIEYLILEDLKNL-KSIHSSALPFPHLQSLRSC 637 (656)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~~~ 637 (656)
- ..+-.|+.|++|+++.|..+ -+........|+|.+|+..
T Consensus 331 ~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 331 F------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred H------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 3 35668999999999999765 2222334456777766543
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=2.9e-05 Score=78.68 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccc---CCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFF---DTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
.+.+.++|+.|+||||+|+.+++..- ....|.|...|... +......++. .+.+.+...+
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~~~p--------------- 89 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVNKKP--------------- 89 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHhcCc---------------
Confidence 46778999999999999999988541 12345666666542 2222333322 2222221111
Q ss_pred HHhhCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhhh-c-ccCCcceEeeccCChhhhHHHHHHHh
Q 037310 81 FKVMKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEIG-G-QMEAHKSFEVECLGYDDSWKLFEVKV 156 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~~-~-~~~~~~~~~l~~l~~~ea~~L~~~~~ 156 (656)
..+++-++|+|+++.. ..++.+...+.... .++.+|++|.+.... . .......+++.++++++....+.+.+
T Consensus 90 ---~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 90 ---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-KGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred ---ccCCceEEEEechhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh
Confidence 1346667888887644 44666666666554 677777777654321 1 11223578899999999988887654
Q ss_pred cCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 157 GRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
... .++.+..++..++|.|.-+
T Consensus 166 ~~~-------~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 166 NDI-------KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred cCC-------CHHHHHHHHHHcCCCHHHH
Confidence 311 1233677899999988543
No 82
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.4e-05 Score=78.06 Aligned_cols=178 Identities=16% Similarity=0.215 Sum_probs=112.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh--
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM-- 84 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-- 84 (656)
-+.|+|++|+|||+.++.++++........+ +++|++-...+..++...|+++++.... ......+..+.+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~--~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPL--TGDSSLEILKRLYDNLSK 120 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCCC--CCCchHHHHHHHHHHHHh
Confidence 3899999999999999999998832222232 8899999999999999999999863221 2445666666777766
Q ss_pred CCccEEEEEeCCcCchhhh--hhccccCCCCCCCcEE--EEEceehhhh--------cccCCcceEeeccCChhhhHHHH
Q 037310 85 KRKKFVLLLDDIWEPVDLA--QVGLLVPSATRASNKV--VFTTLEFEIG--------GQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~~~--~~~~~l~~~~~~~~~i--liTTR~~~~~--------~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
.++.+++|||+++....-+ -+-..+.......++| |..+-+..+. ...+.. .+..++-+.+|-..++
T Consensus 121 ~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il 199 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDIL 199 (366)
T ss_pred cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHH
Confidence 4589999999998653332 2222222222123333 3333333222 222222 3788999999999999
Q ss_pred HHHhcC--CCCCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 037310 153 EVKVGR--DTLDSHPDIPELAKTVVKECGGL-PLALITV 188 (656)
Q Consensus 153 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 188 (656)
..++.. .....+.+.-+.+..++..-+|- -.|+.++
T Consensus 200 ~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 200 RERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 888642 22244455555566666666653 3444433
No 83
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.21 E-value=5.4e-06 Score=83.74 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh--hhHHHHHHHHHHHhCCCCCCCCcccHH----HHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD--LQLKRIQDCIARKIGLFSRSWNSKSLL----EKAED 79 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~ 79 (656)
..++|+|++|+|||||++.+++.. .. .+|+...|+.+... .+..++++.+...+-....+....... ...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I-~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI-TR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh-cc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999987 33 37998889987654 688889888865543333222221111 11111
Q ss_pred HHHh-hCCccEEEEEeCCcC
Q 037310 80 IFKV-MKRKKFVLLLDDIWE 98 (656)
Q Consensus 80 l~~~-l~~~~~LlVlDdv~~ 98 (656)
.... ..+++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 368999999999943
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.5e-05 Score=85.41 Aligned_cols=168 Identities=12% Similarity=0.107 Sum_probs=89.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~l~ 81 (656)
.+.+.++|+.|+||||+|+.+++.. .-....+. .+...-..++.+...-.... +.......++..+.+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~-------~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~ 108 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCL-NCETGVTS-------TPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLD 108 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCC-------CCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHH
Confidence 4678899999999999999998875 21111100 00011111111111000000 0000111222211111
Q ss_pred Hh----hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehh-hh-cccCCcceEeeccCChhhhHHHHH
Q 037310 82 KV----MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFE-IG-GQMEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 82 ~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~-~~-~~~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.. ..+++-++|||+++... ..+.+...+.... .+..+|++|.+.. +. ........+++.+++.++..+.+.
T Consensus 109 ~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLG 187 (702)
T ss_pred HHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHH
Confidence 11 13566789999998653 3444544444433 4556666665532 21 111233578999999999999998
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
+.+....... ..+....|++.++|.+..
T Consensus 188 ~Il~kEgI~i---d~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 188 AILEKEQIAA---DQDAIWQIAESAQGSLRD 215 (702)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 8876654222 234578899999997643
No 85
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=9.4e-06 Score=85.68 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-+.|+|++|+|||.||+.+++.. .....-..++|++.. ++...+...+... .. ..+...+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~~------~f~~~~~~~~~~~-------~~----~~f~~~~~ 192 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSE------KFLNDLVDSMKEG-------KL----NEFREKYR 192 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHH------HHHHHHHHHHhcc-------cH----HHHHHHHH
Confidence 358999999999999999999986 211111356677643 3344444444211 11 12333333
Q ss_pred CccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEcee-hh--------hhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLE-FE--------IGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~-~~--------~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
.+.-+|++||++.... .+.+...+......+..||+||.. +. +..++.....+++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 3456899999974311 112222222111134568888753 22 1222333457889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
.+.+.......+ ++....|++.+.|....+.-+
T Consensus 273 ~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 273 RKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHH
Confidence 988765442332 455788888888765444433
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.6e-05 Score=82.90 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=90.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce-EEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL-VIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~l 80 (656)
.+.+.++|+.|+||||+|+.+++.. .-...... -.+..+... ..+..+........ +.......++....+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~ii 117 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQC----TNCISFNNHNHPDIIEIDAASKTSVDDIRRII 117 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCC----hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHH
Confidence 3578899999999999999999876 21111100 000011100 11111111000000 000111122222222
Q ss_pred HHh----hCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEE-Eceehhhhccc-CCcceEeeccCChhhhHHHH
Q 037310 81 FKV----MKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVF-TTLEFEIGGQM-EAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 81 ~~~----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~~-~~~~~~~l~~l~~~ea~~L~ 152 (656)
... ..+++-++|+|+++.. ..++.+...+.... +.+.+|+ ||+...+.... .....+++.+++.++..+.+
T Consensus 118 e~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L 196 (507)
T PRK06645 118 ESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLL 196 (507)
T ss_pred HHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHH
Confidence 111 2356778999999864 33555555454433 4445444 54444432221 23356899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.+.+....... .++....|++.++|.+.-
T Consensus 197 ~~i~~~egi~i---e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 197 EYITKQENLKT---DIEALRIIAYKSEGSARD 225 (507)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 99887554222 234567799999997643
No 87
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=4.7e-05 Score=86.73 Aligned_cols=209 Identities=14% Similarity=0.172 Sum_probs=121.8
Q ss_pred CCccEEEEEeCCc--CchhhhhhccccCCC---CC--CCcEEEEEceehh--hhcccCCcceEeeccCChhhhHHHHHHH
Q 037310 85 KRKKFVLLLDDIW--EPVDLAQVGLLVPSA---TR--ASNKVVFTTLEFE--IGGQMEAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 85 ~~~~~LlVlDdv~--~~~~~~~~~~~l~~~---~~--~~~~iliTTR~~~--~~~~~~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
..++.++|+||++ +...++-+....... .. .....+.|.+... +...-.+...+.|.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 4569999999994 222222222111111 00 1122233333331 1222234467999999999999999998
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCC------CChhHHHHHHHHHhcCcccCCchHHHHHHHHhcc
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASK------KTPREWEHAIEVLSSSAFKFSSLAKKLYSSLKLS 229 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s 229 (656)
.+... ..+ .+....|+++..|+|+.+..+-..+..+ .+...|+.-...+.. ++..+++-..+..-
T Consensus 232 l~~~~-~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~r 302 (849)
T COG3899 232 LGCTK-LLP---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAAR 302 (849)
T ss_pred hCCcc-ccc---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHH
Confidence 87643 222 3348999999999999999988877663 345556543322222 22233455668888
Q ss_pred cccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHccccccc-------ccCc-
Q 037310 230 YDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKE-------EENC- 301 (656)
Q Consensus 230 ~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~-------~~~~- 301 (656)
.++||+ ..+..+...+++-..+ +...+...+.. .....+....+.|.....+-.+ ....
T Consensus 303 l~kL~~-~t~~Vl~~AA~iG~~F--~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~ 369 (849)
T COG3899 303 LQKLPG-TTREVLKAAACIGNRF--DLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIA 369 (849)
T ss_pred HhcCCH-HHHHHHHHHHHhCccC--CHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchh
Confidence 999999 8898998888887554 44444443321 2334455555555555444321 1111
Q ss_pred --EEecHHHHHHHHHH
Q 037310 302 --VKMHDVIRDMALWI 315 (656)
Q Consensus 302 --~~~h~li~~~~~~~ 315 (656)
--.|+.+|+.+-..
T Consensus 370 ~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 370 TYKFLHDRVQQAAYNL 385 (849)
T ss_pred hHHhhHHHHHHHHhcc
Confidence 14677777776644
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-05 Score=83.52 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCC-------------------CCceEEEEEeCChhhHHHHHHHHHHHhCCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPN-------------------DFDLVIWVVVSKDLQLKRIQDCIARKIGLFS 65 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (656)
.+.+.++|+.|+||||+|+.+++.. .-.. .|..++++.........
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L-~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd-------------- 102 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCL-NCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVE-------------- 102 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHH--------------
Confidence 3567899999999999999999865 1100 11122222221111111
Q ss_pred CCCCcccHHHHHHHHHHh-hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEE-EEceehhhhcc-cCCcceEee
Q 037310 66 RSWNSKSLLEKAEDIFKV-MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVV-FTTLEFEIGGQ-MEAHKSFEV 140 (656)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~~-~~~~~~~~l 140 (656)
+..+..+.+... ..+++-++|+|+++... ..+.+...+.... ..+.+| +||....+... ......+++
T Consensus 103 ------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-~~v~fIL~Ttd~~kil~tI~SRc~~~~f 175 (546)
T PRK14957 103 ------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-EYVKFILATTDYHKIPVTILSRCIQLHL 175 (546)
T ss_pred ------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-CCceEEEEECChhhhhhhHHHheeeEEe
Confidence 111122222211 24567799999997553 3444555444433 445444 55544433311 223457899
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL-ALITVG 189 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a 189 (656)
++++.++..+.+.+.+....... .++....|++.++|.+. |+..+-
T Consensus 176 ~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 176 KHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999888888765543121 23446789999999663 444443
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.18 E-value=1.1e-05 Score=84.94 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
..+.|+|++|+|||.||+.+++.. .....-..++|++.. ++...+...+... .. ..+.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSSE------KFTNDFVNALRNN-------KM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEHH------HHHHHHHHHHHcC-------CH----HHHHHHHH
Confidence 468899999999999999999986 222112346677543 2233344333211 11 22233332
Q ss_pred CccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehh---------hhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFE---------IGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~---------~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+ .-+|||||++.... .+.+...+......+..+|+|+.... +..++.....+++++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34899999974321 11222222221113455777776422 2222333346889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
.+.+.......+ ++....|++.+.|....+.-
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 998876543333 45578888888887654433
No 90
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.16 E-value=5.7e-05 Score=70.60 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
++-.++.++|.-|.|||.+++.+.... . +.-..++.+ -.+..+...+...|..++............++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i-~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVI-DKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEe-cCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 344689999999999999999666554 2 111122222 234456667788888888763332222233333334444
Q ss_pred hh-CCcc-EEEEEeCCcCc--hhhhhhcc---ccCCCCCCCcEEEEEceeh--------hhhcccC-CcceEeeccCChh
Q 037310 83 VM-KRKK-FVLLLDDIWEP--VDLAQVGL---LVPSATRASNKVVFTTLEF--------EIGGQME-AHKSFEVECLGYD 146 (656)
Q Consensus 83 ~l-~~~~-~LlVlDdv~~~--~~~~~~~~---~l~~~~~~~~~iliTTR~~--------~~~~~~~-~~~~~~l~~l~~~ 146 (656)
.. +++| ..+++|+.+.. ..++.+.- .-.... ..-+|+..-..+ .....-. ..-.|++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~-~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSS-KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhccccc-CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33 4566 99999998643 22222211 111111 111122222111 1111101 1123899999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 037310 147 DSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGR 190 (656)
Q Consensus 147 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 190 (656)
+...++..+........+--.++....|.....|+|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999887764222223355678899999999999988764
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.4e-05 Score=81.71 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=60.7
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++... ..+.+...+.... ....+|++|.+ ..+... ......+++.+++.++....+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPP-SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCC-CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 567799999997542 2344444444432 33333434433 322221 123357889999999999999888765432
Q ss_pred CCCCChHHHHHHHHHHcCCC-chHHHHHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGL-PLALITVGRA 191 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~-Plal~~~a~~ 191 (656)
..+ ++....|++.++|. +.++..+...
T Consensus 195 ~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 195 EID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 222 34577888877654 6666666543
No 92
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.14 E-value=5.1e-05 Score=73.68 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCC---CceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPND---FDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
..+-+.|+|.+|.|||+++++++...+...+. --.|+.+.+...++...+...|+.+++.+.... ..........
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~--~~~~~~~~~~ 137 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR--DRVAKLEQQV 137 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--CCHHHHHHHH
Confidence 34568999999999999999999887422211 114778889999999999999999999876432 2222333333
Q ss_pred HHhhC-CccEEEEEeCCcCc-----hhhhhh---ccccCCCCCCCcEEEEEceehhhhccc-----CCcceEeeccCChh
Q 037310 81 FKVMK-RKKFVLLLDDIWEP-----VDLAQV---GLLVPSATRASNKVVFTTLEFEIGGQM-----EAHKSFEVECLGYD 146 (656)
Q Consensus 81 ~~~l~-~~~~LlVlDdv~~~-----~~~~~~---~~~l~~~~~~~~~iliTTR~~~~~~~~-----~~~~~~~l~~l~~~ 146 (656)
...++ -+.-+||||++++. ..-..+ ...+.+.- .-+-|.|-|++-.-+-.. .-...+.++....+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d 216 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELD 216 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCC
Confidence 33443 35668999999764 111111 22233333 445566666664332111 12346777777766
Q ss_pred hhHHHHHHHhcCC-CC--CCCCChHHHHHHHHHHcCCCc
Q 037310 147 DSWKLFEVKVGRD-TL--DSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 147 ea~~L~~~~~~~~-~~--~~~~~~~~~~~~i~~~~~g~P 182 (656)
+-..-|...+... .. ...-...+.+..|...++|+.
T Consensus 217 ~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 217 EEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred cHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 5554444333211 11 112234567899999999975
No 93
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.3e-05 Score=83.93 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=60.3
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcE-EEEEceehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNK-VVFTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~-iliTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.++.-++|||+++... ..+.+...+-.-. ..+. |++||....+... ......+.++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCC-CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 4566799999998653 3444444333322 3444 5555554444321 12235789999999999999988776543
Q ss_pred CCCCCChHHHHHHHHHHcCCCchHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
... .++....|++.++|.|...
T Consensus 201 i~~---d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 201 IAH---EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHH
Confidence 221 1344678999999988543
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.11 E-value=2e-05 Score=84.15 Aligned_cols=159 Identities=20% Similarity=0.199 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-+.|+|++|+|||+||+.+++.. .....-..+.|++... +...+...+... .. ..+.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~~------~~~~~~~~~~~~-------~~----~~~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSEK------FTNDFVNALRNN-------TM----EEFKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHHH------HHHHHHHHHHcC-------cH----HHHHHHHh
Confidence 458999999999999999999987 2111123456765532 222333333210 11 22333333
Q ss_pred CccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehh---------hhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFE---------IGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~---------~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+.-+|||||++.... .+.+...+......+..+|+|+.... +..++.....+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 344899999964311 12222222211113445777776532 2233344457899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
.+.+.......+ ++....|++.+.|....+.
T Consensus 290 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 998875432233 4458888888888765443
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=3.3e-05 Score=76.70 Aligned_cols=133 Identities=11% Similarity=0.072 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
-+.++|++|+|||++|+.+++.. ........-.|+.++. .++ ...+.. . . .......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~----~~l----~~~~~g--~--~---~~~~~~~~~~a--- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR----DDL----VGQYIG--H--T---APKTKEILKRA--- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----HHH----hHhhcc--c--c---hHHHHHHHHHc---
Confidence 57889999999999998887765 1112221112444332 112 211211 1 0 11122223322
Q ss_pred ccEEEEEeCCcCc-----------hhhhhhccccCCCCCCCcEEEEEceehhhhcccC--------CcceEeeccCChhh
Q 037310 87 KKFVLLLDDIWEP-----------VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQME--------AHKSFEVECLGYDD 147 (656)
Q Consensus 87 ~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~--------~~~~~~l~~l~~~e 147 (656)
..-+|+||+++.. ...+.+...+.... .+.+||.++.......... -...+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358999999632 11233444444433 4556666665432211110 12468999999999
Q ss_pred hHHHHHHHhcCC
Q 037310 148 SWKLFEVKVGRD 159 (656)
Q Consensus 148 a~~L~~~~~~~~ 159 (656)
..+++.+.+...
T Consensus 200 l~~I~~~~l~~~ 211 (284)
T TIGR02880 200 LLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHHHh
Confidence 999998877553
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=2.5e-05 Score=80.95 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh-
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV- 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 83 (656)
++-|.|+|++|+|||++|+.+++.. ...| +.+.. ..+..... + ........+.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~~l~~~~~---g---------~~~~~i~~~f~~a 211 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----SELVRKYI---G---------EGARLVREIFELA 211 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----HHHHHHhh---h---------HHHHHHHHHHHHH
Confidence 4568999999999999999999976 3232 22211 11111110 0 011111222222
Q ss_pred hCCccEEEEEeCCcCch----------------hhhhhccccCCC-CCCCcEEEEEceehhhhcc-----cCCcceEeec
Q 037310 84 MKRKKFVLLLDDIWEPV----------------DLAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ-----MEAHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~-----~~~~~~~~l~ 141 (656)
-...+.+|++|+++... .+.++...+... ...+..||.||........ ..-...+.++
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 23467899999997531 011121112111 1145667777775432211 1123468899
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
..+.++..++|..++.........+ ...+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 9999999999998876543222122 567888887764
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=7.3e-05 Score=78.78 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-+.|+|+.|+|||+||+.+++.. . .....++|++.. .+...+...+.. . ....++..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l-~--~~~~~v~yi~~~------~f~~~~~~~l~~-------~----~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL-R--ESGGKILYVRSE------LFTEHLVSAIRS-------G----EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH-H--HcCCCEEEeeHH------HHHHHHHHHHhc-------c----hHHHHHHHcc
Confidence 468899999999999999999986 2 122345666532 233334433321 0 1122344333
Q ss_pred CccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceeh---------hhhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEF---------EIGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~---------~~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+.-+|++||++.... .+.+...+......+..||+||... .+..++.....+.+++++.++-.+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 345888999965321 1122222211111345678877542 12233333457889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
.+.+.......+ ++....|++.+.+.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988866442222 34466677776654
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.6e-06 Score=85.17 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHH---HHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLL---EKAED 79 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~---~~~~~ 79 (656)
+.+.++|+.|+||||+|+.+++.. .-...... ..+....+ ...+........... .....+ +..+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~---~pCg~C~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~ 112 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRL-NCENPIGN---EPCNECTS----CLEITKGISSDVLEIDAASNRGIENIRELRDN 112 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CcccccCc---cccCCCcH----HHHHHccCCccceeechhhcccHHHHHHHHHH
Confidence 457899999999999999999876 21111010 11111111 112211111000000 011111 11122
Q ss_pred HHH-hhCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEE-EEceehhhhcc-cCCcceEeeccCChhhhHHHHHH
Q 037310 80 IFK-VMKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVV-FTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 80 l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+.. -..++.-++|||+++.. ...+.+...+-... ....+| .||....+... ......|.+.+++.++..+.+.+
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-AHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-CceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHH
Confidence 211 12456679999999855 33445544443322 334434 34443333221 12234689999999999999988
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 155 KVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+....... .++....|++.++|.+.
T Consensus 192 i~~~Egi~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 192 LCKIENVQY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCChHH
Confidence 876543222 24457889999999874
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=6.8e-05 Score=77.84 Aligned_cols=160 Identities=11% Similarity=0.142 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCC-C------------------CCCceEEEEEeCChhhHHHHHHHHHHHhCCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDT-P------------------NDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS 65 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~-~------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (656)
.+.+.++|++|+||||+|+.++...... . .+++. +++.......... .+.+...+...
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~- 112 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGVDD-IREILDNVKYA- 112 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCHHH-HHHHHHHHhcC-
Confidence 3577899999999999999998775100 0 12222 2332221111111 11121111100
Q ss_pred CCCCcccHHHHHHHHHHhhCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehh-hhc-ccCCcceEeec
Q 037310 66 RSWNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFE-IGG-QMEAHKSFEVE 141 (656)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~-~~~~~~~~~l~ 141 (656)
-..+++-++|+|+++.. ...+.+...+.... ..+.+|++|.+.. +.. .......+++.
T Consensus 113 -----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 174 (355)
T TIGR02397 113 -----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-EHVVFILATTEPHKIPATILSRCQRFDFK 174 (355)
T ss_pred -----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-cceeEEEEeCCHHHHHHHHHhheeEEEcC
Confidence 01345668999999765 33445555554333 4555566654433 211 11223468889
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
++++++..+.+...+.......+ ++.+..+++.++|.|..+...
T Consensus 175 ~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 175 RIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 99999999999887765442222 355788999999988655443
No 100
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=7.5e-05 Score=80.13 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
..+.|+|..|+|||.|++.+++.. .....-..++|++.. ++...+...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yitae------ef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVSSE------EFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeHH------HHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 348999999999999999999976 211112345677543 233333333321 11 122333333
Q ss_pred CccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehh---------hhcccCCcceEeeccCChhhhHHHH
Q 037310 86 RKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFE---------IGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~---------~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+ .=+|||||++.... -+.+...+......+..|||||+... +..++...-.++|+..+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 34788999964411 12233333222224556888887632 2233344557899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
.+++.......+ ++.+..|++.+.+....|.-+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 998876553333 455777777777654444333
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.07 E-value=6.3e-05 Score=83.62 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
....+.|+|++|+||||+|+.+++.. ...|. .++... ....+ ..+........
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------------------ir~~i~~a~~~ 103 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------------------LRAEVDRAKER 103 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH--------------------HHHHHHHHHHH
Confidence 34567899999999999999999876 33331 111110 00101 11111111111
Q ss_pred h--CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEE--ceehh--hhc-ccCCcceEeeccCChhhhHHHHHH
Q 037310 84 M--KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFT--TLEFE--IGG-QMEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 84 l--~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliT--TR~~~--~~~-~~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+ .+++.++||||++... ..+.+...+. .+..++|+ |.+.. +.. .......+.+++++.++...++.+
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 1 2467799999997542 2333333222 34455553 33321 111 111234689999999999999988
Q ss_pred HhcCCC----CCCCCChHHHHHHHHHHcCCCch
Q 037310 155 KVGRDT----LDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 155 ~~~~~~----~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+.... .....-.++....|++.+.|...
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 775210 01111124556888888888643
No 102
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.5e-06 Score=56.35 Aligned_cols=41 Identities=34% Similarity=0.485 Sum_probs=28.2
Q ss_pred ccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccCh
Q 037310 413 VSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQ 453 (656)
Q Consensus 413 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~ 453 (656)
++|++|++++|+++.+|+.+++|++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35777777777777777767777777777777777776654
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=5.5e-05 Score=77.01 Aligned_cols=171 Identities=11% Similarity=0.017 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCC--CCceEEEEEeCChhhHHHHHHHHHHHh-------CCCCCCC-----Cc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPN--DFDLVIWVVVSKDLQLKRIQDCIARKI-------GLFSRSW-----NS 70 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l-------~~~~~~~-----~~ 70 (656)
.+.+.|+|+.|+||||+|+.+++.. --.. .+... ............+.+...- ..+.... ..
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~L-lc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~ 120 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHI-LSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA 120 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHH-cCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence 4578999999999999999998876 1110 01111 0011111112233332210 0000000 11
Q ss_pred ccHHHHHHHHHHhh-----CCccEEEEEeCCcCchh--hhhhccccCCCCCCCcE-EEEEceehhhhccc-CCcceEeec
Q 037310 71 KSLLEKAEDIFKVM-----KRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNK-VVFTTLEFEIGGQM-EAHKSFEVE 141 (656)
Q Consensus 71 ~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~-iliTTR~~~~~~~~-~~~~~~~l~ 141 (656)
...++. +.+.+.+ .+++.++|+|+++.... .+.+...+.... .... |++|++...+.... .....+++.
T Consensus 121 I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-~~~~fiLit~~~~~llptIrSRc~~i~l~ 198 (351)
T PRK09112 121 ITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-ARALFILISHSSGRLLPTIRSRCQPISLK 198 (351)
T ss_pred CCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-CCceEEEEECChhhccHHHHhhccEEEec
Confidence 123332 2344433 34677999999986532 333433333322 3334 55555543332211 223578999
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
+++.++..+++.+.... . . -.++.+..+++.++|.|....
T Consensus 199 pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 199 PLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999874321 1 1 113446789999999997543
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=6.1e-07 Score=94.83 Aligned_cols=121 Identities=27% Similarity=0.322 Sum_probs=58.6
Q ss_pred eEeecchhhHhhh-ccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 346 TRMSLMQIRIRRL-LESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 346 ~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
..+.+..+.+..+ ..+..+.+++.|++.+|.+..+... +..+.+|++|++++|. +..+. .+..+..|+.|++++|.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccc-ccccc-chhhccchhhheeccCc
Confidence 3333444444442 2245555555555555555544332 3445555555555552 22222 34455555555555555
Q ss_pred CcccCccccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 425 IRRLPMELKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 425 ~~~lp~~~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
+..++. +..+.+|+.+++++|.+..+.. . ...+.+|+.+.+.+|.
T Consensus 152 i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 152 ISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred chhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 554432 3335555555555555554443 1 2345555555555554
No 105
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=4.2e-05 Score=75.30 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..-+.++|++|+||||+|+.+++.... ........++.++.. ++ ..... ..........+.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~----~l----~~~~~-------g~~~~~~~~~~~~a- 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA----DL----VGEYI-------GHTAQKTREVIKKA- 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH----Hh----hhhhc-------cchHHHHHHHHHhc-
Confidence 456789999999999999999886511 111111122333211 11 11110 00111122222222
Q ss_pred CCccEEEEEeCCcCch----------hhhhhccccCCCCCCCcEEEEEceehhh----------hcccCCcceEeeccCC
Q 037310 85 KRKKFVLLLDDIWEPV----------DLAQVGLLVPSATRASNKVVFTTLEFEI----------GGQMEAHKSFEVECLG 144 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~~~iliTTR~~~~----------~~~~~~~~~~~l~~l~ 144 (656)
. ..+|++|+++... ..+.+...+.... ....+++++..... ..++ ...+++++++
T Consensus 105 ~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~ 179 (261)
T TIGR02881 105 L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYT 179 (261)
T ss_pred c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-CCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCC
Confidence 2 2489999997521 2233333333332 33344555443221 1221 2357899999
Q ss_pred hhhhHHHHHHHhcCCC
Q 037310 145 YDDSWKLFEVKVGRDT 160 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~ 160 (656)
.++-.+++.+.+....
T Consensus 180 ~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 180 VEELMEIAERMVKERE 195 (261)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999998876543
No 106
>CHL00181 cbbX CbbX; Provisional
Probab=98.04 E-value=7e-05 Score=74.25 Aligned_cols=134 Identities=10% Similarity=0.089 Sum_probs=72.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
.+.++|++|+|||++|+.+++.. ...+.-....|+.++. .++ ....... . .......+.+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l----~~~~~g~----~---~~~~~~~l~~a--- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDL----VGQYIGH----T---APKTKEVLKKA--- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHH----HHHHhcc----c---hHHHHHHHHHc---
Confidence 47889999999999999998865 1112211122444431 122 2211110 0 11112223322
Q ss_pred ccEEEEEeCCcCc-----------hhhhhhccccCCCCCCCcEEEEEceehhhhccc--------CCcceEeeccCChhh
Q 037310 87 KKFVLLLDDIWEP-----------VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQM--------EAHKSFEVECLGYDD 147 (656)
Q Consensus 87 ~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~--------~~~~~~~l~~l~~~e 147 (656)
..-+|+||+++.. ...+.+...+.... ...+||.++......... .-...+.+++++.+|
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2248999999642 11223334344433 455666676543322111 113468999999999
Q ss_pred hHHHHHHHhcCCC
Q 037310 148 SWKLFEVKVGRDT 160 (656)
Q Consensus 148 a~~L~~~~~~~~~ 160 (656)
..+++.+.+....
T Consensus 201 l~~I~~~~l~~~~ 213 (287)
T CHL00181 201 LLQIAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988876543
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.5e-05 Score=81.62 Aligned_cols=100 Identities=9% Similarity=0.054 Sum_probs=60.4
Q ss_pred CCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEc-eehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTT-LEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTT-R~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|+|+++.... .+.+...+.... ..+.+|++| ....+... ......++++.++.++..+.+.+.+....
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp-~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCC-CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 35677999999986543 444444444432 445555444 43333211 11234688999999999998888775443
Q ss_pred CCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPL-ALITV 188 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 188 (656)
... .++....|++.++|.+. |+..+
T Consensus 196 i~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 196 IPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 121 23446888999999774 44444
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=5e-05 Score=82.60 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHH---HHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEK---AED 79 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~---~~~ 79 (656)
+.+.++|+.|+||||+|+.+++.. .-...+.. -.++. -..++.|...-.... +.......++. .+.
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L-~c~~~~~~---~pCg~----C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~ 110 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGL-NCETGITA---TPCGE----CDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN 110 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh-hhccCCCC---CCCCC----CHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH
Confidence 457899999999999999998876 11110000 00111 122222211000000 00000112222 111
Q ss_pred HHHh-hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcE-EEEEceehhhhc-ccCCcceEeeccCChhhhHHHHHH
Q 037310 80 IFKV-MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNK-VVFTTLEFEIGG-QMEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 80 l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~-iliTTR~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+... ..+++-++|||+++... ..+.+...+-.-. ...+ |++||....+.. .......+.+++++.++..+.+.+
T Consensus 111 ~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-CCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHH
Confidence 1111 24677799999998653 3444433333322 3444 444554444332 122245789999999999999988
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 155 KVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.+....... .+.....|++.++|.+..
T Consensus 190 il~~e~i~~---e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 190 ILQAEQIPF---EPRALQLLARAADGSMRD 216 (647)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 775433111 234467899999998753
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=5.8e-05 Score=81.80 Aligned_cols=95 Identities=8% Similarity=0.077 Sum_probs=58.6
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|||+++.... ...+...+..-. ..+++|++|.+. .+... .+....+.+..++.++..+.+.+.+.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCC-CCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 5667899999976533 333444443322 445566555443 22111 122245788899999999999988776542
Q ss_pred CCCCChHHHHHHHHHHcCCCchH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.. ..+....|++.++|.+.-
T Consensus 197 ~i---d~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 197 AY---EPPALQLLGRAAAGSMRD 216 (709)
T ss_pred Cc---CHHHHHHHHHHhCCCHHH
Confidence 22 234578899999998743
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00011 Score=76.10 Aligned_cols=90 Identities=8% Similarity=0.051 Sum_probs=55.7
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.... .+.+...+.... .++.+|++|.+. .+... ......+.+++++.++..+.+.+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~-~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPP-PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCC-CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----
Confidence 4566888999986532 333444443333 455555555553 33221 12235789999999999988875432
Q ss_pred CCCCChHHHHHHHHHHcCCCchH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.+ .+.+..+++.++|.|..
T Consensus 191 -~~---~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 191 -VD---PETARRAARASQGHIGR 209 (394)
T ss_pred -CC---HHHHHHHHHHcCCCHHH
Confidence 11 34477899999998864
No 111
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.99 E-value=3.7e-05 Score=71.20 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
...-+.++||+|+||||||.-++++. ...|. +.+...-....++ ..++..
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il~~----------------------- 98 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAILTN----------------------- 98 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHHHT-----------------------
T ss_pred CcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHHHh-----------------------
Confidence 35668889999999999999999987 33331 3332111111111 111111
Q ss_pred hCCccEEEEEeCCcCch--hhhhhcc---------ccCCCC---------CCCcEEEEEceehhhhcccCC-c-ceEeec
Q 037310 84 MKRKKFVLLLDDIWEPV--DLAQVGL---------LVPSAT---------RASNKVVFTTLEFEIGGQMEA-H-KSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~--~~~~~~~---------~l~~~~---------~~~~~iliTTR~~~~~~~~~~-~-~~~~l~ 141 (656)
+ +++-+|.+|+++... .-+.+.. .+..+. .+-+-|=-|||.-.+...+.. . ...+++
T Consensus 99 l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 99 L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLE 177 (233)
T ss_dssp ---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE--
T ss_pred c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchh
Confidence 1 234578889986541 1111111 111110 011223336666544332222 1 235799
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
..+.+|-.++..+.+..-.... .++.+.+|++.+.|-|.-..
T Consensus 178 ~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 178 FYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp --THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHH
Confidence 9999999999988776544222 34668999999999996433
No 112
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00015 Score=73.97 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc--eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFD--LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
-..+.|+|+.|.|||-|++++++.. ....+ .++++.. ......+...+.. .....+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s------e~f~~~~v~a~~~-----------~~~~~Fk~ 172 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS------EDFTNDFVKALRD-----------NEMEKFKE 172 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH------HHHHHHHHHHHHh-----------hhHHHHHH
Confidence 4579999999999999999999987 44444 4555432 2222333333321 23445666
Q ss_pred hhCCccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhH
Q 037310 83 VMKRKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSW 149 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~ 149 (656)
.. .-=++++||++-... -+.+...|......|..||+|++.... ..+....-.+++.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 65 445899999964311 222333333333244488888866432 233344457999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHcC
Q 037310 150 KLFEVKVGRDTLDSHPDIPELAKTVVKECG 179 (656)
Q Consensus 150 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 179 (656)
.++.+.+.......+++. ..-|++...
T Consensus 251 aiL~kka~~~~~~i~~ev---~~~la~~~~ 277 (408)
T COG0593 251 AILRKKAEDRGIEIPDEV---LEFLAKRLD 277 (408)
T ss_pred HHHHHHHHhcCCCCCHHH---HHHHHHHhh
Confidence 999998776654544433 444444443
No 113
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00011 Score=77.57 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc-----cCCC-------------CCCceEEEEEeCChhhHHHHHHHHHHHhCCCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF-----FDTP-------------NDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSR 66 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~-----~~~~-------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 66 (656)
.+.+.++|+.|+||||+|+.+++.. +... .....++.++........++. .+......
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~--- 110 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCY--- 110 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHh---
Confidence 3478899999999999999998743 0000 011122333332222222211 11111110
Q ss_pred CCCcccHHHHHHHHHHhhCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEc-eehhhhc-ccCCcceEeecc
Q 037310 67 SWNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTT-LEFEIGG-QMEAHKSFEVEC 142 (656)
Q Consensus 67 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTT-R~~~~~~-~~~~~~~~~l~~ 142 (656)
.-..+++-++|+|+++... ..+.+...+..-. +.+.+|++| ....+.. .......+++.+
T Consensus 111 ---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-~~v~fIlatte~~Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 111 ---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-PHVKFILATTEVKKIPVTIISRCQRFDLQK 174 (491)
T ss_pred ---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-CCeEEEEEeCChHHHHHHHHHhheeeeccc
Confidence 0013566789999997553 3444555444433 455555554 3333322 122345789999
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
++.++..+.+.+.+....... .++.+..|++.++|.+..
T Consensus 175 l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 175 IPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRN 213 (491)
T ss_pred ccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 999999999998887654222 234477899999987753
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=9e-05 Score=79.51 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHH---HH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEK---AE 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~---~~ 78 (656)
.+.+.++|+.|+||||+|+.+++.. .-.. |... .....-..++.+........ ........++. ..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~------~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~ 109 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAI-NCLN------PKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIID 109 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-cCCC------CCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHH
Confidence 4578899999999999999998875 1111 1110 00011111111111100000 00000111111 11
Q ss_pred HHHHh-hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEc-eehhhhc-ccCCcceEeeccCChhhhHHHHH
Q 037310 79 DIFKV-MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTT-LEFEIGG-QMEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 79 ~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTT-R~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.+... ..+++-++|+|+++... ..+.+...+.... ..+.+|++| ....+.. .......+++.+++.++....+.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-KHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-CcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 11111 12345579999997652 3444444444332 344444444 3333321 12234578999999999999988
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPL-ALITV 188 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 188 (656)
+.+.......+ .+.+..+++.++|.+. |+..+
T Consensus 189 ~il~kegi~Is---~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 189 SIAKKEKIKIE---DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 87755432222 3447889999999664 44333
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=5.7e-05 Score=79.03 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE-eCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV-VSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~l 80 (656)
.+.+.++|+.|+||||+|+.+++.. .-...++..-|.. ...+...-..++.+........ ........++... +
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l 115 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL-L 115 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH-H
Confidence 3458899999999999999998876 2111111111110 0001111111222211100000 0000111222222 2
Q ss_pred HHhh-----CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEc-eehhhhccc-CCcceEeeccCChhhhHHH
Q 037310 81 FKVM-----KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTT-LEFEIGGQM-EAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 81 ~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTT-R~~~~~~~~-~~~~~~~l~~l~~~ea~~L 151 (656)
...+ .+++-++|+|+++... .++.+...+.... +.+.+|++| +...+.... .....+++.++++++..+.
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~ 194 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-PHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQ 194 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2222 3456689999997653 4555655555443 455555544 433332211 1234688999999999988
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
+.+.+....... .++.+..|++.++|.+.-+
T Consensus 195 l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 195 LQGICEAEGISV---DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 888775433122 2455888999999977533
No 116
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.94 E-value=3.4e-05 Score=67.24 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 117
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.0001 Score=78.94 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCC-------------------CCceEEEEEeCChhhHHHHHHHHHHHhCCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPN-------------------DFDLVIWVVVSKDLQLKRIQDCIARKIGLFS 65 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (656)
.+.+.++|+.|+||||+|+.+++.. --.. .+..++.++......+.++ +.++..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~-- 113 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPY-- 113 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhh--
Confidence 3467899999999999999998865 1111 1111223322211111111 111111110
Q ss_pred CCCCcccHHHHHHHHHHhhCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeec
Q 037310 66 RSWNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVE 141 (656)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~ 141 (656)
.-..++.-++|+|+++.. ...+.+...+..-. ..+++|++|.+ ..+... ......++++
T Consensus 114 ----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-~~~~fIlattd~~kl~~tI~SRc~~~~f~ 176 (509)
T PRK14958 114 ----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-SHVKFILATTDHHKLPVTVLSRCLQFHLA 176 (509)
T ss_pred ----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-CCeEEEEEECChHhchHHHHHHhhhhhcC
Confidence 001356678999999865 33444444444333 45555554433 332211 1223468899
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
+++.++..+.+.+.+....... .++....|++.++|.+.-
T Consensus 177 ~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 177 QLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRD 216 (509)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHH
Confidence 9999998888777765543222 234467888899987743
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00013 Score=78.72 Aligned_cols=175 Identities=13% Similarity=0.154 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 81 (656)
.+.+.++|+.|+||||+|+.+++.. .-....+. ...+.-..++.|........... .....++. +.+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~~-------~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~i-R~L~ 108 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKAL-NCETAPTG-------EPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDA-KRLK 108 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-cccCCCCC-------CCCcccHHHHHHhcCCCCceEEEecccccCHHHH-HHHH
Confidence 4678889999999999999999876 11110000 00011111111111100000000 00111111 1121
Q ss_pred Hh-----hCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHH
Q 037310 82 KV-----MKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 82 ~~-----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~ 152 (656)
+. ..+++-++|||+++.. ...+.+...+.... ....+|++|.+ ..+... ......+++++++.++..+.+
T Consensus 109 ~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 109 EAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred HHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 11 2356679999999765 33445555444332 34455554444 333211 122346889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCc-hHHHHHHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLP-LALITVGRAM 192 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~~l 192 (656)
.+.+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 188 ~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 188 TKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 887765432222 345788999999865 5666665443
No 119
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=2.4e-05 Score=80.11 Aligned_cols=93 Identities=8% Similarity=-0.037 Sum_probs=58.0
Q ss_pred CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++.++|+|+++.. .....+...+..-. .++.+|++|.+.. +... ......+.+.+++.++..+.+.+......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp-~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~- 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPP-ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP- 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCC-CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-
Confidence 56779999999754 33344444444332 4555666665543 3211 22345789999999999999987542211
Q ss_pred CCCCChHHHHHHHHHHcCCCchHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
......+++.++|.|....
T Consensus 218 ------~~~~~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 218 ------DDPRAALAALAEGSVGRAL 236 (365)
T ss_pred ------HHHHHHHHHHcCCCHHHHH
Confidence 1223678999999997543
No 120
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=5.1e-05 Score=66.94 Aligned_cols=90 Identities=22% Similarity=0.110 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
...+.|+|++|+||||+|+.++... ......++++..+........... ........ ................
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL---LIIVGGKK-ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH---hhhhhccC-CCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 222234666655443322222111 00000111 1122222223333333
Q ss_pred CCc-cEEEEEeCCcCchh
Q 037310 85 KRK-KFVLLLDDIWEPVD 101 (656)
Q Consensus 85 ~~~-~~LlVlDdv~~~~~ 101 (656)
... ..++++|+++....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 333 49999999976644
No 121
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00017 Score=78.38 Aligned_cols=172 Identities=10% Similarity=0.076 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCC--CCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPN--DFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAED 79 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~ 79 (656)
.+.+.++|+.|+||||+|+.+++.. --.. .......-.+ ..-..+..|...-.... +.......++..+.
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~L-nC~~~~~~~~~~~~pC----g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iRel 112 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSL-NCQGPDGQGGITATPC----GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQL 112 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccCCCCCCC----CccHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 4567899999999999999997765 1100 0011101111 11122222211000000 00001122222222
Q ss_pred HHHh----hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE-Eceehhhh-cccCCcceEeeccCChhhhHHH
Q 037310 80 IFKV----MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF-TTLEFEIG-GQMEAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 80 l~~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TTR~~~~~-~~~~~~~~~~l~~l~~~ea~~L 151 (656)
+... ..++.-++|||+++... ..+.+...+..-. ....+|+ ||....+. ........++++.++.++..+.
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~ 191 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEH 191 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-CCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHH
Confidence 2211 12455689999998653 3444444443332 4445554 44433332 1122335789999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
+.+.+....... .++....|++.++|.+.-+
T Consensus 192 L~~i~~~egi~i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 192 LTQVLAAENVPA---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 988876544222 2345788899999876433
No 122
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=1.6e-06 Score=83.80 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=118.1
Q ss_pred CCcccceeEeecchhhHhh-----h-ccCCCCCCcceEeccccCC----cccch------hHHhcCCcccEEEccCCCCC
Q 037310 339 IGLWKEVTRMSLMQIRIRR-----L-LESSSSPHLQTLFLGSNDL----NEVNR------DFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~~----~~~~~------~~~~~l~~L~~L~l~~~~~~ 402 (656)
......+..+.+++|.+-. + +.+.+.++|+..++++-.. ..+++ ..+-+.++|++|+||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3444566677777765421 2 1334445666666654411 11111 12344556777777777444
Q ss_pred ccCccc----cCCcccCcEEeCCCCCCccc--------------CccccCCCCCCeEecCCccccccChhh----hcCCC
Q 037310 403 GHLLTG----ISNLVSLQHLDPARSKIRRL--------------PMELKYLVHLKRLNLEFTRLTRIPQEV----ISNLK 460 (656)
Q Consensus 403 ~~~p~~----~~~L~~L~~L~l~~~~~~~l--------------p~~~~~l~~L~~L~l~~~~~~~l~~~~----l~~l~ 460 (656)
..-+.. +....+|+.|.|.+|.+... ...+.+-++|+++....|.+.+.+... +...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 333222 33456677777777655422 112345556667766666555544322 34556
Q ss_pred CCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhH--hhhcCcccccccCCceeecccccceE
Q 037310 461 MLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALR--MLLDSPRLQSLSTPSLCLKHCCQSEL 538 (656)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~~~ll~~L~l~~~~~~~~ 538 (656)
.|+.+.+..|.+- ..........+..+++|++|++..+.+.... .+....+.++++ +.|.+..|....-
T Consensus 186 ~leevr~~qN~I~--------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L-~El~l~dcll~~~ 256 (382)
T KOG1909|consen 186 TLEEVRLSQNGIR--------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL-RELNLGDCLLENE 256 (382)
T ss_pred ccceEEEeccccc--------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh-eeecccccccccc
Confidence 6666666666531 0111234455666777777777655442111 122222222333 4444444432210
Q ss_pred EEeccccccHHHHHHhCCCCCCcccc-ccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 539 LVFNQRRSLLQNICISYSKLKHLTWL-IVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 539 ~~~~~~~~~L~~Ll~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
........+ ...|+|+.|++.+|....+-.... -......|.|++|.+.+|.
T Consensus 257 -----------------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l---------a~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 257 -----------------GAIAFVDALKESAPSLEVLELAGNEITRDAALAL---------AACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred -----------------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHH---------HHHHhcchhhHHhcCCccc
Confidence 000001111 246778888887776544332100 0134457778888777753
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0002 Score=74.58 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccC-----CCCCCceE-EEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFD-----TPNDFDLV-IWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAE 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~-----~~~~f~~~-~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 78 (656)
.+.+.++|++|+||||+|+.+++.... ....|+.. +.+..........+ ..+..++...
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~-------------- 103 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIP-------------- 103 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhc--------------
Confidence 457889999999999999999887511 01112211 11111111111111 1111111100
Q ss_pred HHHHhhCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEc-eehhhhcc-cCCcceEeeccCChhhhHHHHHH
Q 037310 79 DIFKVMKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTT-LEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 79 ~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTT-R~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
-..+++-++|+|+++.... ++.+...+.... ..+.+|++| ....+... ......+++.++++++....+.+
T Consensus 104 ----p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 104 ----PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-AHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred ----cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-CceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence 0124556899999975432 444444343322 344455444 33222211 12234788999999999999888
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 155 KVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+.......+ ++.+..++..++|.+.
T Consensus 179 ~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 179 IAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred HHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 7765442222 3457888888988654
No 124
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00016 Score=78.67 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc--eEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFD--LVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAED 79 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~ 79 (656)
.+.+.++|+.|+||||+|+.+++.. .-..... .-.+-.++ .-..+..|...-.... ........++..+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~~~cg----~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReI 120 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTIDLCG----VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREI 120 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCccccCc----ccHHHHHHhcCCCCceEEecccccCCHHHHHHH
Confidence 4568899999999999999999875 1110000 00010111 1111122221110000 00011112222211
Q ss_pred HHHh----hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE-Eceehhhhcc-cCCcceEeeccCChhhhHHH
Q 037310 80 IFKV----MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF-TTLEFEIGGQ-MEAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 80 l~~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L 151 (656)
+... ..+++-++|+|+++... ..+.+...+..-. ..+.+|+ |+....+... ......+++..++.++....
T Consensus 121 ie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~ 199 (598)
T PRK09111 121 IESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAH 199 (598)
T ss_pred HHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-CCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHH
Confidence 1111 13456689999997653 3444544444433 4455554 4443333211 12235789999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
+.+.+........ .+....|++.++|.+.-+.
T Consensus 200 L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 200 LSRIAAKEGVEVE---DEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 9888765442222 3457888999999875443
No 125
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00036 Score=70.48 Aligned_cols=92 Identities=8% Similarity=0.037 Sum_probs=56.1
Q ss_pred CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.+ ...+.+...+-.-. .++.+|++|.+.. +... ......+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 34455678999865 33444444444333 4566666666543 3211 2223568899999999999987754211
Q ss_pred CCCCChHHHHHHHHHHcCCCchHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
..+.+..++..++|.|...
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRA 200 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHH
Confidence 1233567889999999643
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00032 Score=74.84 Aligned_cols=98 Identities=8% Similarity=0.150 Sum_probs=61.1
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhc-ccCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGG-QMEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.... .+.+...+-... ..+++|++|.+. .+.. .......+++.+++.++..+.+.+.+.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPP-SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcC-CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4567899999976532 344444443333 455655555543 2211 1122357899999999999999887765442
Q ss_pred CCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
.. .++.+..|++.++|.+.-+..
T Consensus 195 ~i---~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 195 SY---EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CC---CHHHHHHHHHHcCCcHHHHHH
Confidence 22 245578899999998744433
No 127
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00021 Score=80.53 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=60.1
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEE-EEceehhhhc-ccCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVV-FTTLEFEIGG-QMEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.++.-++|||+++... ..+.+...+..-. ..+.+| +||....+.. .......|++..++.++..+.+.+.+....
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4566689999998653 3444555555543 444544 4444443332 223345789999999999988888765443
Q ss_pred CCCCCChHHHHHHHHHHcCCCchH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
... -++....|++.++|.+..
T Consensus 197 v~i---d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 197 VPV---EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCC---CHHHHHHHHHHcCCCHHH
Confidence 222 233467889999997743
No 128
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=4.1e-06 Score=88.51 Aligned_cols=193 Identities=24% Similarity=0.163 Sum_probs=121.5
Q ss_pred CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEe
Q 037310 363 SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLN 442 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 442 (656)
.+..+..+.+..+.+...... +..+++|.+|++.+| .+..+...+..+++|++|++++|.|..+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 455666666777766663322 678899999999999 44444433888999999999999999885 377888899999
Q ss_pred cCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccH-HHhhcCCCCcEEEEEecchhhhHhhhcCcccc
Q 037310 443 LEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLV-VEILSLQHLNVLTVTLESFCALRMLLDSPRLQ 521 (656)
Q Consensus 443 l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 521 (656)
+.+|.++.++. +..+++|+.++++.|.+ ..... . +..+.+|+.+.+..+.......+.....
T Consensus 147 l~~N~i~~~~~--~~~l~~L~~l~l~~n~i------------~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~-- 209 (414)
T KOG0531|consen 147 LSGNLISDISG--LESLKSLKLLDLSYNRI------------VDIENDE-LSELISLEELDLGGNSIREIEGLDLLKK-- 209 (414)
T ss_pred eccCcchhccC--CccchhhhcccCCcchh------------hhhhhhh-hhhccchHHHhccCCchhcccchHHHHH--
Confidence 99999999887 77799999999999984 11111 1 5677778888887765433332221111
Q ss_pred cccCCceeecccccceEEEeccccc--cHHHH-HHhCCCCCCccccccCCCccEEEEeCCc
Q 037310 522 SLSTPSLCLKHCCQSELLVFNQRRS--LLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 522 ~~ll~~L~l~~~~~~~~~~~~~~~~--~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
+ ..+++.++....+.. ..... +|+.+ +.+.........+..+..+..|++.++.
T Consensus 210 --l-~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 210 --L-VLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred --H-HHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 1 222333333333211 11111 26777 6554332222344455666666655443
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.81 E-value=0.00028 Score=73.46 Aligned_cols=151 Identities=16% Similarity=0.214 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH-
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK- 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 82 (656)
.++-|.|+|++|+|||++|+.+++.. ... |+.+.. .++ ..... . ........+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~~l----~~~~~-------g-~~~~~i~~~f~~ 219 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----SEL----VQKFI-------G-EGARLVRELFEL 219 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----HHH----hHhhc-------c-chHHHHHHHHHH
Confidence 35668999999999999999999976 222 222211 111 11110 0 01111222222
Q ss_pred hhCCccEEEEEeCCcCch------------h----hhhhccccCCC-CCCCcEEEEEceehhhhccc-----CCcceEee
Q 037310 83 VMKRKKFVLLLDDIWEPV------------D----LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQM-----EAHKSFEV 140 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~~-----~~~~~~~l 140 (656)
.-...+.+|+||+++... . +.++...+... ...+..||.||......... .-...+++
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 223567899999997531 1 11111111111 11345566677654332211 11346899
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
+..+.++..++|..+..........+ ...+++.+.|.-
T Consensus 300 ~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 99999999999998876543222222 466777777753
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00042 Score=73.91 Aligned_cols=99 Identities=8% Similarity=0.010 Sum_probs=59.4
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEc-eehhhhc-ccCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTT-LEFEIGG-QMEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTT-R~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|+|+++... ..+.+...+.... +...+|++| +...+.. .......+.+.+++.++....+.+.+....
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-PRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567799999997552 3444544444433 344444444 3332221 112234688999999999988888776544
Q ss_pred CCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
... .++.+..|++.++|.+..+..
T Consensus 196 i~i---d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 196 IEY---EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 222 234477888899997654433
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.80 E-value=0.00018 Score=79.17 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=56.3
Q ss_pred HHHHHHHhhCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEE--Eceehhhhc-cc-CCcceEeeccCChhhhH
Q 037310 76 KAEDIFKVMKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVF--TTLEFEIGG-QM-EAHKSFEVECLGYDDSW 149 (656)
Q Consensus 76 ~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~ili--TTR~~~~~~-~~-~~~~~~~l~~l~~~ea~ 149 (656)
.+..+.+.+.++++.++-|+.|.. ..|+.+...+.... +...++| ||++..... .. .....+.+.+++.+|.+
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGA-PADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCc-cceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 345555666666666665544432 22444444444443 4444555 555433111 11 12235788999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 150 KLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 150 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
+++.+.+.......+ ++....|.+....-+.++..++
T Consensus 360 ~Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~ 396 (615)
T TIGR02903 360 LIVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILA 396 (615)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHH
Confidence 999987764321111 2334444444433344554443
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00034 Score=76.80 Aligned_cols=155 Identities=12% Similarity=0.171 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccc--------------------CCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFF--------------------DTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF 64 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~--------------------~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 64 (656)
.+.+.++|+.|+||||+|+.++.... ....+|+. ..+.........++. .+..++...
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~~~~~vd~Ir-~li~~~~~~ 116 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAASNNSVDDIR-NLIEQVRIP 116 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEecccccCCHHHHH-HHHHHHhhC
Confidence 45688999999999999999887651 00112332 222222111121211 111111110
Q ss_pred CCCCCcccHHHHHHHHHHhhCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE-Eceehhhhcc-cCCcceEee
Q 037310 65 SRSWNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF-TTLEFEIGGQ-MEAHKSFEV 140 (656)
Q Consensus 65 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~-~~~~~~~~l 140 (656)
. ..+++-++|+|+++... ..+.+...+..-. ..+.+|+ ||+...+... ......+++
T Consensus 117 P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-~~tifIL~tt~~~kIl~tI~SRc~iv~f 177 (614)
T PRK14971 117 P------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-SYAIFILATTEKHKILPTILSRCQIFDF 177 (614)
T ss_pred c------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-CCeEEEEEeCCchhchHHHHhhhheeec
Confidence 0 12456688999997653 3555655555543 4455444 5444444322 223457899
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+++.++....+.+.+........ .+.+..|++.++|...
T Consensus 178 ~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 178 NRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 999999999999887765442222 3457889999999664
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00038 Score=75.44 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=62.0
Q ss_pred CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEE-Eceehhhhc-ccCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVF-TTLEFEIGG-QMEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.. ...+.+...+..-. ....+|+ ||....+.. .......+++..++.++..+.+.+.+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPP-EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 46668999999755 33444544444433 4444444 544443322 1223457899999999999998887765432
Q ss_pred CCCCChHHHHHHHHHHcCCCch-HHHHHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPL-ALITVGRA 191 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~~ 191 (656)
.. .++....|++.++|.+. ++..+-..
T Consensus 196 ~i---~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 196 VV---DDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 23456778899999764 44444433
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00036 Score=76.12 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=89.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE-eCChhhHHHHHHHHHHHhCCCCC--C-CCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV-VSKDLQLKRIQDCIARKIGLFSR--S-WNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~--~-~~~~~~~~~~~~l 80 (656)
.+.+.++|+.|+||||+|+.+++.. .-....+.-.|.. .......-..++.+...-..... + ......++.....
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~ 116 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLR 116 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHH
Confidence 3568899999999999999998876 1111111001111 00011111112222111000000 0 0111122322222
Q ss_pred HHh----hCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEE-Eceehhhhc-ccCCcceEeeccCChhhhHHHH
Q 037310 81 FKV----MKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVF-TTLEFEIGG-QMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 81 ~~~----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili-TTR~~~~~~-~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
... ..+++-++|+|+++.... .+.+...+..-. ..+.+|+ |++...+.. .......+++.+++.++....+
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L 195 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-PHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQL 195 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHH
Confidence 221 234566899999976533 445555555433 3444444 444333322 2233457899999999988888
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.+.+....... .++.+..|++.++|...
T Consensus 196 ~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 196 QMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 87765433122 24457889999999654
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0004 Score=76.24 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=60.0
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEE-EEceehhhhc-ccCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVV-FTTLEFEIGG-QMEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|+|+++... ....+...+-... ..+.+| +|++...+.. .......+++.+++.++..+.+...+....
T Consensus 116 ~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-KHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred cCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-CceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567789999997553 3444444333332 344444 4544443322 122335789999999999999888765443
Q ss_pred CCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPL-ALITV 188 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 188 (656)
... ..+.+..|++.++|-+. |+..+
T Consensus 195 I~i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 195 ISY---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 121 23447789999998764 44433
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00031 Score=73.28 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.+|||+|+|||.||++++.+. .+-++.++.+ .|.... ....++..-+.+.+.-
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel--------~vPf~~isAp--------eivSGv-------SGESEkkiRelF~~A~ 279 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL--------GVPFLSISAP--------EIVSGV-------SGESEKKIRELFDQAK 279 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc--------CCceEeecch--------hhhccc-------CcccHHHHHHHHHHHh
Confidence 4557899999999999999999987 2334444321 122111 2233444444555555
Q ss_pred CCccEEEEEeCCcCc--------hh-----hhhhccccC---CCCC-CCcEEEE-Eceehhh----hcccCC-cceEeec
Q 037310 85 KRKKFVLLLDDIWEP--------VD-----LAQVGLLVP---SATR-ASNKVVF-TTLEFEI----GGQMEA-HKSFEVE 141 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~--------~~-----~~~~~~~l~---~~~~-~~~~ili-TTR~~~~----~~~~~~-~~~~~l~ 141 (656)
+..+++++||++|-. .+ ..++...+. .... ....+|| +|..+.. +++.+. .+.+.+.
T Consensus 280 ~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~ 359 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLG 359 (802)
T ss_pred ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeec
Confidence 778999999999743 11 112222221 1111 1233344 3333332 222222 2346677
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
--++.+-.++++....+-......+ ..+|++...|+
T Consensus 360 vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 360 VPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 6676666677766654433233333 46677776664
No 137
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=6.5e-05 Score=73.74 Aligned_cols=103 Identities=25% Similarity=0.212 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-+.|+|.+|+|||.||..+++.. .. ....++|+++ .++...+....... ......+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~--~~~~v~~~~~------~~ll~~i~~~~~~~----~~~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IE--KGVPVIFVNF------PQLLNRIKSTYKSS----GKEDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEEH------HHHHHHHHHHHhcc----ccccHHH----HHHHhc
Confidence 358899999999999999999987 22 2234566653 33444444333211 1111222 233334
Q ss_pred CccEEEEEeCCcC--chhhh--hhccccCCCCCCCcEEEEEceeh
Q 037310 86 RKKFVLLLDDIWE--PVDLA--QVGLLVPSATRASNKVVFTTLEF 126 (656)
Q Consensus 86 ~~~~LlVlDdv~~--~~~~~--~~~~~l~~~~~~~~~iliTTR~~ 126 (656)
+-. ||||||+.. ..+|. .+...+...-..+..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 333 899999943 23332 23333332212455688888654
No 138
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.4e-06 Score=91.75 Aligned_cols=128 Identities=26% Similarity=0.245 Sum_probs=88.3
Q ss_pred CCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecC
Q 037310 365 PHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLE 444 (656)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 444 (656)
-.|.+.++++|.+.-+... +.-++.|+.|+|+.|++.+.- .+..+++|++|||++|.+..+|.--..-.+|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 3455556666655544333 566778888888888655443 6778888888888888888877632222348888888
Q ss_pred CccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 445 FTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 445 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
+|.++.+.. +.+|.+|+.|+++.|-. ....-+.-|..|..|++|.+.+++.
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll-----------~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLL-----------SEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhh-----------hcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888888765 77888888888887763 2333455566777778888877653
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=3.3e-05 Score=78.58 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=44.5
Q ss_pred HhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC-CCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCC
Q 037310 385 FQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS-KIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKML 462 (656)
Q Consensus 385 ~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L 462 (656)
+..+++++.|++++| ....+|. -..+|+.|.+++| .+..+|..+ ..+|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------cc
Confidence 334677778888877 5555551 1235777777765 455666544 246777777777 6655554 25
Q ss_pred cEEEeeecC
Q 037310 463 RVLRMYECG 471 (656)
Q Consensus 463 ~~L~l~~~~ 471 (656)
+.|.+.++.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 555555443
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00061 Score=74.97 Aligned_cols=173 Identities=10% Similarity=0.096 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCC--CC-CcccHHHHH---H
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSR--SW-NSKSLLEKA---E 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~-~~~~~~~~~---~ 78 (656)
.+.+.++|+.|+||||+|+.+++.. .-..... .....+....++.+......... +. .....++.. +
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~ 110 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE 110 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHH
Confidence 3567899999999999999999876 1110000 00011111223333221111000 00 011122221 1
Q ss_pred HHHHh-hCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHH
Q 037310 79 DIFKV-MKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 79 ~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.+... ..+++-++|+|+++.. ...+.+...+.... ..+.+|++|.+ ..+... ......++++.++.++....+.
T Consensus 111 ~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 111 RVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred HHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHH
Confidence 11111 1245678999999755 33445544444433 44555555533 333221 1223467889999999998888
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
+.+.......+ .+.+..|++.++|.+..+...
T Consensus 190 ~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 190 KIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 87765442222 345788999999988644433
No 141
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=1.1e-05 Score=78.33 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=124.6
Q ss_pred CcccceeEeecchhhH----hhh--------ccCCCCCCcceEeccccCCcccch----hHHhcCCcccEEEccCCCCCc
Q 037310 340 GLWKEVTRMSLMQIRI----RRL--------LESSSSPHLQTLFLGSNDLNEVNR----DFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~----~~l--------~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~ 403 (656)
...+.++...+++.-. ..+ +.+.++++|++|+|+.|.+....+ ..+..+..|+.|.|.+|....
T Consensus 55 ~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 55 ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 3445777777776411 111 356788899999999997654322 346678999999999995332
Q ss_pred c-------------CccccCCcccCcEEeCCCCCCcccCc-----cccCCCCCCeEecCCcccc--cc--ChhhhcCCCC
Q 037310 404 H-------------LLTGISNLVSLQHLDPARSKIRRLPM-----ELKYLVHLKRLNLEFTRLT--RI--PQEVISNLKM 461 (656)
Q Consensus 404 ~-------------~p~~~~~L~~L~~L~l~~~~~~~lp~-----~~~~l~~L~~L~l~~~~~~--~l--~~~~l~~l~~ 461 (656)
. .-+.+..-+.|+++...+|.+..-+. .+...+.|+.+.+..|.+. .+ -...+.++++
T Consensus 135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPH 214 (382)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCc
Confidence 1 12234566789999999998875543 4778899999999988553 22 1122678999
Q ss_pred CcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhH--hhhc-CcccccccCCceeecccccce
Q 037310 462 LRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALR--MLLD-SPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 462 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~-~~~~~~~ll~~L~l~~~~~~~ 537 (656)
|+.|++..|.+. .......-..++.+++|+.|+++.|-..+-. .+.. +......+ +.|.+.+|.+..
T Consensus 215 LevLdl~DNtft--------~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L-~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 215 LEVLDLRDNTFT--------LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSL-EVLELAGNEITR 284 (382)
T ss_pred ceeeecccchhh--------hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCC-ceeccCcchhHH
Confidence 999999999841 1122334567888999999999977542211 1111 11112335 777777776653
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00049 Score=72.88 Aligned_cols=94 Identities=9% Similarity=0.148 Sum_probs=58.4
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++... ..+.+...+.... ....+|++|.+ ..+... ......++++++++++....+.+.+.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~-~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCC-CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 567789999997552 3444555554433 45555555533 322211 122346899999999999888887654331
Q ss_pred CCCCChHHHHHHHHHHcCCCch
Q 037310 162 DSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
.. .++.+..|++.++|.+.
T Consensus 199 ~i---~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 199 ET---SREALLPIARAAQGSLR 217 (451)
T ss_pred CC---CHHHHHHHHHHcCCCHH
Confidence 22 23457889999999764
No 143
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.71 E-value=0.00011 Score=69.77 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
.++|+|++|+||||++..+.... ...|+.++++.-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 57889999999999999999876 677887777643
No 144
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.68 E-value=9.4e-05 Score=68.78 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=19.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+.+.|+|++|+|||+|+++++...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.67 E-value=0.00036 Score=74.04 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCC---CceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPND---FDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
++-+.|+|++|+|||++|+.+++.. ....+ .....|+++... ++ +.... . .............+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~----eL----l~kyv---G-ete~~ir~iF~~Ar 282 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP----EL----LNKYV---G-ETERQIRLIFQRAR 282 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch----hh----ccccc---c-hHHHHHHHHHHHHH
Confidence 4568899999999999999999986 21111 123344444321 11 10000 0 00011111111222
Q ss_pred Hh-hCCccEEEEEeCCcCch---------h-----hhhhccccCCCCC-CCcEEEEEceehhhhccc-----CCcceEee
Q 037310 82 KV-MKRKKFVLLLDDIWEPV---------D-----LAQVGLLVPSATR-ASNKVVFTTLEFEIGGQM-----EAHKSFEV 140 (656)
Q Consensus 82 ~~-l~~~~~LlVlDdv~~~~---------~-----~~~~~~~l~~~~~-~~~~iliTTR~~~~~~~~-----~~~~~~~l 140 (656)
.. -.+++++|+||+++... + +.++...+..... .+..||.||......+.. .-...+++
T Consensus 283 ~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~ 362 (512)
T TIGR03689 283 EKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRI 362 (512)
T ss_pred HHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEe
Confidence 21 13578999999997431 1 1223333332221 233344455444332211 11235899
Q ss_pred ccCChhhhHHHHHHHhcC
Q 037310 141 ECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~ 158 (656)
+..+.++..++|..++..
T Consensus 363 ~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 363 ERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999998754
No 146
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.67 E-value=0.00017 Score=75.34 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-|.|+|++|+|||++|+.+++.. ...| +.+..+. +. .... ..........+....
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se------L~----~k~~-------Ge~~~~vr~lF~~A~ 273 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE------LI----QKYL-------GDGPKLVRELFRVAE 273 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch------hh----hhhc-------chHHHHHHHHHHHHH
Confidence 4568899999999999999999976 3333 1121111 11 1100 001111222222233
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCC-CCCCcEEEEEceehhhhccc-----CCcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQM-----EAHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~~-----~~~~~~~l~~ 142 (656)
.+.+.+|+||+++.... +-.+...+... ...+..||.||......... .-...++++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 46788999999863210 00111111111 11456677777765443221 1234688999
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.+.++..++|..+..........+ ...++..+.|+-
T Consensus 354 Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 999999999998876543222222 455666666653
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00069 Score=70.29 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++-|.|+|++|+|||++|+.+++.. ...| +.+.. ..+ ..... ..........+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s~l----~~k~~-------ge~~~~lr~lf~~A 234 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------SEF----VQKYL-------GEGPRMVRDVFRLA 234 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------HHH----HHHhc-------chhHHHHHHHHHHH
Confidence 35678899999999999999999976 2222 12211 111 11110 00111122222333
Q ss_pred hCCccEEEEEeCCcCch------------h----hhhhccccCCC-CCCCcEEEEEceehhhhcc--c---CCcceEeec
Q 037310 84 MKRKKFVLLLDDIWEPV------------D----LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ--M---EAHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~--~---~~~~~~~l~ 141 (656)
....+.+|+||+++... . +..+...+... ...+..||.||......+. . .-...++++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 35678999999986431 0 11111112211 1145567777776543321 1 123457888
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
..+.++..++|..+..+.......+ ...+++.+.|+.
T Consensus 315 ~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 8888888888887765543222222 466777777764
No 148
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.66 E-value=0.00041 Score=70.63 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
+.++.++|++|+|||++|+.+++.. .. .+.+++.+. .....+...+...... ..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~i~~~l~~~~~~------------------~~~ 97 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDFVRNRLTRFAST------------------VSL 97 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHHHHHHHHHHHHh------------------hcc
Confidence 4677789999999999999999875 21 223444433 1111111111110000 001
Q ss_pred CCccEEEEEeCCcCch--h-hhhhccccCCCCCCCcEEEEEceehhhh-c-ccCCcceEeeccCChhhhHHHHHH
Q 037310 85 KRKKFVLLLDDIWEPV--D-LAQVGLLVPSATRASNKVVFTTLEFEIG-G-QMEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~-~~~~~~~l~~~~~~~~~iliTTR~~~~~-~-~~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
.+.+-++|+|+++... + .+.+...+.... .++++|+||...... . .......+.++..+.++..+++..
T Consensus 98 ~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 98 TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred cCCCeEEEEECcccccCHHHHHHHHHHHHhcC-CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 2345689999997551 1 222333233323 566788887653311 1 011123567777777777766543
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.8e-05 Score=51.32 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=24.7
Q ss_pred CcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccC
Q 037310 389 ASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLP 429 (656)
Q Consensus 389 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp 429 (656)
++|++|++++| .+..+|+.+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777777 34455655777777777777777666554
No 150
>PTZ00202 tuzin; Provisional
Probab=97.64 E-value=0.0023 Score=65.25 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
+++++|+|++|+|||||++.+.... . + ..++.-.. ...+++..++.+++.+......+-.++..+.+.+.-
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l-~----~--~qL~vNpr--g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~ 356 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKE-G----M--PAVFVDVR--GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAK 356 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC-C----c--eEEEECCC--CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999876 1 2 23333333 568999999999997433221222233333333322
Q ss_pred -C-CccEEEEEeCCcCchhhhhhc---cccCCCCCCCcEEEEEceehhhhcc---cCCcceEeeccCChhhhHHHHHHHh
Q 037310 85 -K-RKKFVLLLDDIWEPVDLAQVG---LLVPSATRASNKVVFTTLEFEIGGQ---MEAHKSFEVECLGYDDSWKLFEVKV 156 (656)
Q Consensus 85 -~-~~~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~~~iliTTR~~~~~~~---~~~~~~~~l~~l~~~ea~~L~~~~~ 156 (656)
. +++.+||+-==+ -.++..+- ..+.... .-|+|++----+.+--. ...-..|.+++|+.++|.++-.+..
T Consensus 357 ~e~GrtPVLII~lre-g~~l~rvyne~v~la~dr-r~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 357 KMNGETPLLVLKLRE-GSSLQRVYNEVVALACDR-RLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccc-hhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3 677777764321 12222211 1122222 56777775444432111 1223579999999999999887653
No 151
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00091 Score=73.45 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC---CCCCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS---RSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~l~~ 82 (656)
+.+.++|+.|+||||+|+.+++.. --. ..+.... .....-+.++.+........ ........++..+.+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L-~c~-~~~~~~~----~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~ 112 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL-NCL-NSDKPTP----EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER 112 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh-cCC-CcCCCCC----CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHH
Confidence 567899999999999999999886 111 1100000 01111222233322111100 00011122222222211
Q ss_pred h----hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEE-EEceehhhhcc-cCCcceEeeccCChhhhHHHHHH
Q 037310 83 V----MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVV-FTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 83 ~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
. ..+++-++|+|+++... ..+.+...+..-. ..+.+| +|+....+... ......+++..++.++....+.+
T Consensus 113 a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 113 AQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-PRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-cCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 1 12456789999998653 3445555444432 334444 44433333221 12234678889999988888877
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 155 KVGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.+........ .+.+..|++.++|.+..+
T Consensus 192 ia~kegi~is---~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 192 IAEKESIEIE---PEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HHHHhCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 7655331222 344788999999977543
No 152
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1.6e-05 Score=75.20 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCCCcceEeccccCCcccc--hhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCc--ccCccccCCCC
Q 037310 362 SSSPHLQTLFLGSNDLNEVN--RDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIR--RLPMELKYLVH 437 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~--~lp~~~~~l~~ 437 (656)
..++.++.+++.+|.++++. ...+..|++|++|+++.|+..+.+-..--.+.+|++|-|.++.+. ..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45667777777777776653 344567777777777777443322111134556777777776443 34444566666
Q ss_pred CCeEecCCcccc
Q 037310 438 LKRLNLEFTRLT 449 (656)
Q Consensus 438 L~~L~l~~~~~~ 449 (656)
++.|+++.|+++
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 666666666443
No 153
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0018 Score=68.62 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++=|.++||+|+|||++|+++++.. ...| +.+.. .++...+ ....+....+.+.+.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkg----pEL~sk~-----------vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKG----PELFSKY-----------VGESERAIREVFRKA 523 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccC----HHHHHHh-----------cCchHHHHHHHHHHH
Confidence 46778899999999999999999976 4344 22221 1111111 111122222223333
Q ss_pred hCCccEEEEEeCCcCch-------------hhhhhccccCCCCCCCcEEEEE-ceehhhhcc--cC---CcceEeeccCC
Q 037310 84 MKRKKFVLLLDDIWEPV-------------DLAQVGLLVPSATRASNKVVFT-TLEFEIGGQ--ME---AHKSFEVECLG 144 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~~~~~~~~iliT-TR~~~~~~~--~~---~~~~~~l~~l~ 144 (656)
=+--++++.||.+|... .+.++...+......+..+||. |..+...+. +. -.+.+.++.-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 23456899999987431 1223333344333122334443 333322211 11 23456777777
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH----HHHHHHHH--cCC--CChhHHHHHHHHHhcCcccCC
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA----LITVGRAM--ASK--KTPREWEHAIEVLSSSAFKFS 216 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla----l~~~a~~l--~~~--~~~~~~~~~~~~l~~~~~~~~ 216 (656)
.+.-.++|+.++.+-......+ ..+|++...|+.=| +-.=|+.+ ++. .+.-.|+++.+.+........
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVD----LEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHHHHHHHHHhcCCCCcccc----HHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCC
Confidence 8888899999887655333333 34555555554311 11112211 111 345567777777776655444
Q ss_pred c
Q 037310 217 S 217 (656)
Q Consensus 217 ~ 217 (656)
.
T Consensus 680 ~ 680 (693)
T KOG0730|consen 680 S 680 (693)
T ss_pred H
Confidence 3
No 154
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.61 E-value=4.6e-06 Score=82.56 Aligned_cols=256 Identities=16% Similarity=0.112 Sum_probs=128.6
Q ss_pred CCCCCcceEecccc-CCcccchh-HHhcCCcccEEEccCCCCCcc--CccccCCcccCcEEeCCCCCCcc---cCccccC
Q 037310 362 SSSPHLQTLFLGSN-DLNEVNRD-FFQFMASLRVLTLSDGSLPGH--LLTGISNLVSLQHLDPARSKIRR---LPMELKY 434 (656)
Q Consensus 362 ~~~~~L~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~p~~~~~L~~L~~L~l~~~~~~~---lp~~~~~ 434 (656)
..+++++.|++..| .+++.... .-..+++|++|++++|..+.. +-.-......++.+.+++|.=.+ +-.--..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 55667777777775 34443322 234577777777777643222 11112233445555555542111 1000112
Q ss_pred CCCCCeEecCCc-cccccChhhh-cCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhh-cCCCCcEEEEEecchhhh
Q 037310 435 LVHLKRLNLEFT-RLTRIPQEVI-SNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEIL-SLQHLNVLTVTLESFCAL 511 (656)
Q Consensus 435 l~~L~~L~l~~~-~~~~l~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~ 511 (656)
+.-+..+++..| .+++.....+ .+...|+.|..++|.. .+...+.+|+ +..+|+.+.++.+..-.-
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-----------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-----------ITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-----------CchHHHHHHhcCCCceEEEeccccchhhh
Confidence 222333444444 3443332112 2355666666666652 3444555554 456666666665442111
Q ss_pred HhhhcCcccccccCCceeecccccce---EEEeccccccHHHH-HHhCCCCCCc-----c-ccccCCCccEEEEeCCchh
Q 037310 512 RMLLDSPRLQSLSTPSLCLKHCCQSE---LLVFNQRRSLLQNI-CISYSKLKHL-----T-WLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 512 ~~l~~~~~~~~~ll~~L~l~~~~~~~---~~~~~~~~~~L~~L-l~~~~~~~~~-----~-~l~~l~~L~~L~l~~~~~~ 581 (656)
..+.....-...+ +.|++-+|..-. +.....+.+.|+.| ++.|..+++- . .-.....|+.|+|++|+.+
T Consensus 336 ~~ft~l~rn~~~L-e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 336 RGFTMLGRNCPHL-ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhcCChhh-hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 1111111222223 444444443222 11122344567777 7666544443 2 1235778889999999888
Q ss_pred hHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCC--CCCCChhHHHHHHhhh
Q 037310 582 EEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSA--LPFPHLQSLRSCLLIA 641 (656)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~--~~~~~L~~L~~~~~~~ 641 (656)
.+... ..+..+++|+.+.+.+|.....-+... -.+|+++...+....+
T Consensus 415 ~d~~L------------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t 464 (483)
T KOG4341|consen 415 TDATL------------EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVT 464 (483)
T ss_pred hHHHH------------HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCC
Confidence 77644 477789999999999988765433322 2466666655544433
No 155
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.61 E-value=0.0018 Score=68.87 Aligned_cols=152 Identities=17% Similarity=0.118 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-|.++|++|+|||.+|+.+++.. ...| +-++.+ .+.... .........+.+...-
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~----------~l~~~~-------vGese~~l~~~f~~A~ 315 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG----------KLFGGI-------VGESESRMRQMIRIAE 315 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH----------Hhcccc-------cChHHHHHHHHHHHHH
Confidence 4568899999999999999999987 2222 122211 011000 0111112222222222
Q ss_pred CCccEEEEEeCCcCchh--------------hhhhccccCCCCCCCcEEEEEceehhhhcc----c-CCcceEeeccCCh
Q 037310 85 KRKKFVLLLDDIWEPVD--------------LAQVGLLVPSATRASNKVVFTTLEFEIGGQ----M-EAHKSFEVECLGY 145 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~~~~~iliTTR~~~~~~~----~-~~~~~~~l~~l~~ 145 (656)
...+++|+||++|.... ...+...+.... .+..||-||......+. . .-...+.++.-+.
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 45789999999974211 011111122222 33345556655432211 1 1234577888889
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
++-.++|..+..+.......+ .....+++.+.|+-
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 999999998886643111111 22567888887764
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=2.3e-06 Score=90.10 Aligned_cols=126 Identities=21% Similarity=0.278 Sum_probs=90.8
Q ss_pred CCcccceeEeecchhhHhhhc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCcc-ccCCcccCc
Q 037310 339 IGLWKEVTRMSLMQIRIRRLL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLT-GISNLVSLQ 416 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~ 416 (656)
...|.++...++++|.+..+- .+.-++.++.|+++.|.+..+. .+..+++|+.|||++| ....+|. ..... +|+
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hhe
Confidence 345667788888888776654 3456778888888888888776 4788888888888888 4444442 11122 388
Q ss_pred EEeCCCCCCcccCccccCCCCCCeEecCCcccc---ccChhhhcCCCCCcEEEeeecC
Q 037310 417 HLDPARSKIRRLPMELKYLVHLKRLNLEFTRLT---RIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 417 ~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.|.+++|.++++ .++.+|.+|+.||+++|-+. .+.+ ++.|..|+.|.+.||.
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 888888888777 35788888888888888443 3443 6778888888888876
No 157
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.59 E-value=0.00021 Score=68.49 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce-EEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL-VIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
..++...+||+|.|||+-|+.++... --..-|.+ +.-.+++....+. +.++ ...+.........+
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis-----vvr~--------Kik~fakl~~~~~~ 121 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS-----VVRE--------KIKNFAKLTVLLKR 121 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc-----chhh--------hhcCHHHHhhcccc
Confidence 45678889999999999999999887 22334433 3333333222211 0000 00011111000000
Q ss_pred hh--CCcc-EEEEEeCCcCc--hhhhhhccccCCCCCCCcE-EEEEceehhhhccc-CCcceEeeccCChhhhHHHHHHH
Q 037310 83 VM--KRKK-FVLLLDDIWEP--VDLAQVGLLVPSATRASNK-VVFTTLEFEIGGQM-EAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 83 ~l--~~~~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~-iliTTR~~~~~~~~-~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
.. .-++ -.+|||+++.+ ..|..+...+.+.. ..++ |+||+.-..+.... ..-.-+..+++.+++...-+...
T Consensus 122 ~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 122 SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-RTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-cceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHH
Confidence 00 1123 47999999877 44777766666654 4444 66666655443222 11235788999999999988888
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
+.......+ ++..+.|+..++|-
T Consensus 201 a~~E~v~~d---~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 201 ASKEGVDID---DDALKLIAKISDGD 223 (346)
T ss_pred HHHhCCCCC---HHHHHHHHHHcCCc
Confidence 876653433 34478888888884
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=5.2e-06 Score=69.39 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=77.2
Q ss_pred ceeEeecchhhHhhh----ccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 344 EVTRMSLMQIRIRRL----LESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
....+.++++.+.-+ ..+.....|...++++|.+..+++.+-.+++.+..|++++| -+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 334455555544322 24466667777788888887777776666777788888877 5666777777888888888
Q ss_pred CCCCCCcccCccccCCCCCCeEecCCccccccChh
Q 037310 420 PARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQE 454 (656)
Q Consensus 420 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~ 454 (656)
++.|.+...|..+-.|.+|..|+...+....+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 88888777777777777777777777766666654
No 159
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=5.6e-05 Score=68.57 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC-CCCceEEE
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP-NDFDLVIW 41 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~-~~f~~~~w 41 (656)
+.|.|+|++|+||||||+.+++.. ... -++|.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc
Confidence 468999999999999999999987 333 56777776
No 160
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0012 Score=71.76 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC---CCCCCcccHHHHHHHH-
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF---SRSWNSKSLLEKAEDI- 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~~l- 80 (656)
.+.+.++|+.|+||||+|+.+++.. .-..+.. ..++....+- +.+...-... .........++.....
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L-~c~~~~~---~~pC~~C~~C----~~i~~~~~~dv~~idgas~~~vddIr~l~e 109 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCL-NCVNGPT---PMPCGECSSC----KSIDNDNSLDVIEIDGASNTSVQDVRQIKE 109 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh-ccccCCC---CCCCccchHH----HHHHcCCCCCeEEecCcccCCHHHHHHHHH
Confidence 4568899999999999999999876 1111100 0001110011 1111100000 0000011122221111
Q ss_pred --HH-hhCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHH
Q 037310 81 --FK-VMKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 81 --~~-~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.. -..+++-++|+|+++... ..+.+...+.... ..+.+|.+|.+ ..+... ......+++.+++.++..+.+.
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLK 188 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHH
Confidence 11 124566789999997653 3445555544433 44555555543 322211 1223468899999999988888
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
+.+....... -++.+..|++.++|.+..+
T Consensus 189 ~i~~~egi~i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 189 KVCLEDQIKY---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 8775443222 2445778999999977543
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=97.56 E-value=0.0012 Score=72.72 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-|.|+|++|+|||++|+.++... ... |+.++. .++... .. ..........+.+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~-s~f~~~-------~~-------g~~~~~vr~lF~~A~ 272 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG-SEFVEM-------FV-------GVGAARVRDLFKKAK 272 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH-HHHHHH-------hh-------hhhHHHHHHHHHHHh
Confidence 4568999999999999999999875 111 222221 111110 00 001112223344444
Q ss_pred CCccEEEEEeCCcCch------------h----hhhhccccCCC-CCCCcEEEEEceehhhhcc-c----CCcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPV------------D----LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ-M----EAHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~-~----~~~~~~~l~~ 142 (656)
.+.+++|+||+++... . +.++...+... ...+..||.||......+. + .-...+.++.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 6788999999996431 1 12222222211 1134456666655433221 1 1124678888
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
.+.++-.++++.++..... ..+.....+++.+.|.
T Consensus 353 Pd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 353 PDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 8999999999988765321 1233467788888774
No 162
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.56 E-value=0.00041 Score=69.91 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce-EEEEEe-CChhhHHHHHHHHHHHhCCCCCCCCcccHHH---HHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL-VIWVVV-SKDLQLKRIQDCIARKIGLFSRSWNSKSLLE---KAEDI 80 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~l 80 (656)
..+.|+|++|+|||||++++++.. . ..+-+. ++|+.+ .+..+..++.+.+...+.....+......-. ....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i-~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV-A-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-H-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999998876 1 122244 356555 4556778888888877765433222221111 11122
Q ss_pred HHhh--CCccEEEEEeCC
Q 037310 81 FKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 81 ~~~l--~~~~~LlVlDdv 96 (656)
..++ .+++++||+|++
T Consensus 212 Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 2222 589999999999
No 163
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.0013 Score=71.13 Aligned_cols=151 Identities=16% Similarity=0.121 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-+.++|++|+|||++|+.++... ... ++.++. . ++... .. ..........+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~-~---~~~~~----~~-------g~~~~~l~~~f~~a~ 144 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG-S---DFVEM----FV-------GVGASRVRDLFEQAK 144 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH-H---HHHHH----Hh-------cccHHHHHHHHHHHH
Confidence 3458899999999999999999875 212 222221 1 11111 10 001112223333333
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCC-CCCCcEEEEEceehhhhc-----ccCCcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSA-TRASNKVVFTTLEFEIGG-----QMEAHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~~~~~~iliTTR~~~~~~-----~~~~~~~~~l~~ 142 (656)
...+.+|+||+++.... ..++...+... ...+..||.||......+ .-.-...+.++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 45678999999965310 11111112111 113344555665543211 111234678888
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.+.++-.++|..++...... .+ .....+++.+.|..
T Consensus 225 Pd~~~R~~il~~~l~~~~~~--~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLA--PD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCC--cc--hhHHHHHHhCCCCC
Confidence 88888999998877654312 11 22567888888753
No 164
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=0.00023 Score=64.91 Aligned_cols=66 Identities=17% Similarity=0.374 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCC-CCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDT-PNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.|.|+|++|+||||||+.++... .. .-+.|.+.|-+. ....+.++....+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHh
Confidence 58999999999999999998875 22 124455555221 112233445555555666
Q ss_pred CccEEEEEeCCcC
Q 037310 86 RKKFVLLLDDIWE 98 (656)
Q Consensus 86 ~~~~LlVlDdv~~ 98 (656)
+.+ .|+|+...
T Consensus 58 ~~~--wIidg~~~ 68 (171)
T PRK07261 58 KHD--WIIDGNYS 68 (171)
T ss_pred CCC--EEEcCcch
Confidence 666 57788743
No 165
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.52 E-value=0.0018 Score=64.73 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++.++|+|++|+|||.+|+.++... ... ++.++. .++ ..... . .......+......+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~-----~i~vsa----~eL----~sk~v---G-EsEk~IR~~F~~A~~~ 206 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIE-----PIVMSA----GEL----ESENA---G-EPGKLIRQRYREAADI 206 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCC-----eEEEEH----HHh----hcCcC---C-cHHHHHHHHHHHHHHH
Confidence 46789999999999999999999987 222 233221 111 11000 0 0111111111111111
Q ss_pred h--CCccEEEEEeCCcCc------hh---h-----hhhccccC-------------CCCCCCcEEEEEceehhhhccc--
Q 037310 84 M--KRKKFVLLLDDIWEP------VD---L-----AQVGLLVP-------------SATRASNKVVFTTLEFEIGGQM-- 132 (656)
Q Consensus 84 l--~~~~~LlVlDdv~~~------~~---~-----~~~~~~l~-------------~~~~~~~~iliTTR~~~~~~~~-- 132 (656)
. .++.++|+||++|.. .+ - .++...+. .....+..||+||.+....+..
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 1 467999999999732 00 0 11221111 1112556678888776543221
Q ss_pred --CCcceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 133 --EAHKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 133 --~~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
+... ..+..-+.++-.++++.+..... .+ .....+|++...|-|+
T Consensus 287 RpGRfD-k~i~lPd~e~R~eIL~~~~r~~~--l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 287 RDGRME-KFYWAPTREDRIGVVHGIFRDDG--VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCC-ceeCCCCHHHHHHHHHHHhccCC--CC---HHHHHHHHHcCCCCCc
Confidence 1111 12334456666777776665433 11 2446778888888775
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.51 E-value=0.00022 Score=73.52 Aligned_cols=88 Identities=16% Similarity=0.046 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.+.++|++|+|||++|+.+++.. .....++.+.|+.+.+..+..+....+. ..... -........+.+.+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~vg-y~~~~G~f~~~~~~A~ 267 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGVG-FRRKDGIFYNFCQQAK 267 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccC----CCCCC-eEecCchHHHHHHHHH
Confidence 3568889999999999999999987 5556788899999988777665543221 10000 0000111111222222
Q ss_pred --CCccEEEEEeCCcC
Q 037310 85 --KRKKFVLLLDDIWE 98 (656)
Q Consensus 85 --~~~~~LlVlDdv~~ 98 (656)
.++++++|+|+++.
T Consensus 268 ~~p~~~~vliIDEINR 283 (459)
T PRK11331 268 EQPEKKYVFIIDEINR 283 (459)
T ss_pred hcccCCcEEEEehhhc
Confidence 24689999999964
No 167
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0013 Score=68.85 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=77.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
+.=|.++||+|+|||-||++|+++. +..| +++..+ +++.... ...+.+.+.+.+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV------------GESErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV------------GESERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh------------hhHHHHHHHHHHHh
Confidence 3447789999999999999999986 4333 444321 2222221 11222333333333
Q ss_pred -CCccEEEEEeCCcCc-------------hhhhhhccccCCC-CCCCcEEEEEceehhhhccc----CC-cceEeeccCC
Q 037310 85 -KRKKFVLLLDDIWEP-------------VDLAQVGLLVPSA-TRASNKVVFTTLEFEIGGQM----EA-HKSFEVECLG 144 (656)
Q Consensus 85 -~~~~~LlVlDdv~~~-------------~~~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~~----~~-~~~~~l~~l~ 144 (656)
..-+++|.||.+|.. ....++.-.+... .+.|..||=.|..+.+.+.. +. ....-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 457999999999753 1133333334333 34666677777776653321 11 2345566667
Q ss_pred hhhhHHHHHHHhcC
Q 037310 145 YDDSWKLFEVKVGR 158 (656)
Q Consensus 145 ~~ea~~L~~~~~~~ 158 (656)
.+|-.++++.....
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 88889999888874
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=7.5e-05 Score=82.64 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=48.6
Q ss_pred CcceEeccccC--CcccchhHHhcCCcccEEEccCCCCCc-cCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEe
Q 037310 366 HLQTLFLGSND--LNEVNRDFFQFMASLRVLTLSDGSLPG-HLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLN 442 (656)
Q Consensus 366 ~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 442 (656)
+|+.|+++|.. .++++......+|+|+.|.+.+-.+.. .+.....++++|..||+++|++..+ .++++|.+|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 45555555542 122333333345555555555532221 1222334555555555555555555 4455555555555
Q ss_pred cCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 443 LEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 443 l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
+.+=.++.-.. ..+-.|++|+.|+++...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 54443332110 114455555555555544
No 169
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.0022 Score=66.91 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
++.|.|+-++||||+++.+.... ... +++++.........-..+... .+...-..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~~~-------------------~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDLLR-------------------AYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHHHH-------------------HHHHhhcc
Confidence 89999999999999997777765 222 666664332211111111111 11111112
Q ss_pred ccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcc------cCCcceEeeccCChhhhHHHH
Q 037310 87 KKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQ------MEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 87 ~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~------~~~~~~~~l~~l~~~ea~~L~ 152 (656)
++..++||.|+...+|......+.... +. .++||+.+...... .+....+++-||+..|-..+.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~-~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRG-NL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccc-cc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 788999999999999998777777665 43 78888877664322 133457899999988877654
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00018 Score=73.27 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=31.5
Q ss_pred cceeEeecchhhHhhhccCCCCCCcceEecccc-CCcccchhHHhcCCcccEEEccCCCCCccCc
Q 037310 343 KEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSN-DLNEVNRDFFQFMASLRVLTLSDGSLPGHLL 406 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 406 (656)
.++++|+++++.++.+|.+ .++|++|.+.+| .++.++.. + .++|+.|++++|.....+|
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence 4566666666666665522 235666666665 33333321 2 2456666666664444454
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0013 Score=72.05 Aligned_cols=99 Identities=9% Similarity=0.097 Sum_probs=58.6
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEE-EEceehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVV-FTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++... ..+.+...+-.-. ..+.+| +||....+... ......+++..++.++....+...+.....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp-~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPP-PHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCC-CCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 456689999997653 2444444444332 444544 45444433221 222346788999999988888877655432
Q ss_pred CCCCChHHHHHHHHHHcCCCc-hHHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLP-LALITV 188 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~P-lal~~~ 188 (656)
..+ ++.+..|++.++|.. .|+..+
T Consensus 197 ~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 197 SIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 345778889998865 444444
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.00087 Score=62.38 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLF 64 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 64 (656)
++|+.++|+.|+||||.+.+++.++ ... -..+..++.... ....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 5899999999999999999999887 222 345667776533 34445556777777654
No 173
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.44 E-value=0.00077 Score=61.05 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ 49 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (656)
++.|+|++|+||||+|..++... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 47899999999999999999887 22345677888765543
No 174
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.0003 Score=68.66 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..-+.|+|++|+|||.||..+++.. - ..++ .+.|+++ .++...+..... .....+..+ . +
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a-~-~~g~-~v~f~~~------~~L~~~l~~a~~-------~~~~~~~l~---~-l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL-I-ENGW-RVLFTRT------TDLVQKLQVARR-------ELQLESAIA---K-L 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH-H-HcCC-ceeeeeH------HHHHHHHHHHHh-------CCcHHHHHH---H-H
Confidence 3458999999999999999999875 1 2223 4556543 334444432211 111222222 2 2
Q ss_pred CCccEEEEEeCCcCc----hhhhhhccccCCCCCCCcEEEEEceeh
Q 037310 85 KRKKFVLLLDDIWEP----VDLAQVGLLVPSATRASNKVVFTTLEF 126 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~~~iliTTR~~ 126 (656)
.+.-||||||+... .....+...+.... ....+||||...
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~-~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARY-ERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHH-hCCCEEEEcCCC
Confidence 23459999999533 11122333333222 223588888775
No 175
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00057 Score=70.07 Aligned_cols=129 Identities=21% Similarity=0.188 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
....|.+.|++|+|||+||..++..- .|+.+--++-..-..+.+. ..-.-..+.+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEs-----------------aKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSES-----------------AKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHH-----------------HHHHHHHHHHHHh
Confidence 35578899999999999999999864 6776644432111111000 0111122334444
Q ss_pred hCCccEEEEEeCCcCchhhhhhcc------------ccCCCCCCCcE--EEEEceehhhhcccCC----cceEeeccCCh
Q 037310 84 MKRKKFVLLLDDIWEPVDLAQVGL------------LVPSATRASNK--VVFTTLEFEIGGQMEA----HKSFEVECLGY 145 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~~~~~~~------------~l~~~~~~~~~--iliTTR~~~~~~~~~~----~~~~~l~~l~~ 145 (656)
.+..--.||+||++..-+|..++. .+....+.|-+ |+-||.+..+.+.++- ...+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 556677899999976655444322 23333333334 4447777777777653 23688898887
Q ss_pred -hhhHHHHHH
Q 037310 146 -DDSWKLFEV 154 (656)
Q Consensus 146 -~ea~~L~~~ 154 (656)
++..+.+..
T Consensus 675 ~~~~~~vl~~ 684 (744)
T KOG0741|consen 675 GEQLLEVLEE 684 (744)
T ss_pred hHHHHHHHHH
Confidence 667776655
No 176
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0032 Score=61.94 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++=|.++|++|.|||-||++|+++- ...| +.+.. .++.+..+ ..+ ....+.+.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----Irvvg----SElVqKYi----GEG--------aRlVRelF~l 239 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVG----SELVQKYI----GEG--------ARLVRELFEL 239 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEecc----HHHHHHHh----ccc--------hHHHHHHHHH
Confidence 45668899999999999999999975 3333 33221 12222221 111 1123333333
Q ss_pred h-CCccEEEEEeCCcCch------------h----hhhhccccCC-CCCCCcEEEEEceehhhhccc----C-CcceEee
Q 037310 84 M-KRKKFVLLLDDIWEPV------------D----LAQVGLLVPS-ATRASNKVVFTTLEFEIGGQM----E-AHKSFEV 140 (656)
Q Consensus 84 l-~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~~~~~~iliTTR~~~~~~~~----~-~~~~~~l 140 (656)
. ...+.+|.+|.+|... + +-++...+.. ..+...+||-.|....+.+.. + -.+.+++
T Consensus 240 ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEf 319 (406)
T COG1222 240 AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEF 319 (406)
T ss_pred HhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeec
Confidence 3 3568999999997430 0 1111121221 122557788888877664432 1 2345778
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
+.-+.+.-.++|.-+..+-......+ ...+++.+.|..
T Consensus 320 plPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 320 PLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 86666666777777776554344444 466777777765
No 177
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=6.9e-06 Score=81.37 Aligned_cols=224 Identities=22% Similarity=0.170 Sum_probs=139.7
Q ss_pred CcccEEEccCCCCCcc--CccccCCcccCcEEeCCCCC-Cc--ccCccccCCCCCCeEecCCc-cccccChh-hhcCCCC
Q 037310 389 ASLRVLTLSDGSLPGH--LLTGISNLVSLQHLDPARSK-IR--RLPMELKYLVHLKRLNLEFT-RLTRIPQE-VISNLKM 461 (656)
Q Consensus 389 ~~L~~L~l~~~~~~~~--~p~~~~~L~~L~~L~l~~~~-~~--~lp~~~~~l~~L~~L~l~~~-~~~~l~~~-~l~~l~~ 461 (656)
..|+.|.++++..... +-....+.+++..|.+.+|. ++ .+-.--..+++|++|++..| .+++.... .....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4588888988854432 23345577888888888884 33 12222457788999999887 77654432 2456889
Q ss_pred CcEEEeeecCCCCcCCCcccccCccccHHH-hhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEE-
Q 037310 462 LRVLRMYECGSDKQEGDSILIGGREVLVVE-ILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL- 539 (656)
Q Consensus 462 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~- 539 (656)
|++|+++.|.. ..+...+. ...++.++.+...+|....++.+.........+ ..+++..|....-.
T Consensus 218 L~~lNlSwc~q-----------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i-~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQ-----------ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI-LKLNLQHCNQLTDED 285 (483)
T ss_pred HHHhhhccCch-----------hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh-hccchhhhccccchH
Confidence 99999999973 22233333 335566666666666655555555554444444 56666677544411
Q ss_pred --EeccccccHHHH-HHhCCCCCCcc--ccc-cCCCccEEEEeCCchhhHHhcccccCCcCcccccCccccccccccccc
Q 037310 540 --VFNQRRSLLQNI-CISYSKLKHLT--WLI-VAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILE 613 (656)
Q Consensus 540 --~~~~~~~~L~~L-l~~~~~~~~~~--~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 613 (656)
..-.+...|+.| .++|....+.. .++ ..++|+.|.++.|..+.+..-. .--.+++.|+.+.+.
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-----------~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-----------MLGRNCPHLERLDLE 354 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-----------hhhcCChhhhhhccc
Confidence 112234567778 78887766544 233 6799999999999977665321 123378999999999
Q ss_pred CCcchhh--hcCCCCCCCChhHHH
Q 037310 614 DLKNLKS--IHSSALPFPHLQSLR 635 (656)
Q Consensus 614 ~~~~l~~--i~~~~~~~~~L~~L~ 635 (656)
+|..... +.......|.|++|+
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred ccceehhhhHhhhccCCchhccCC
Confidence 9865433 222333466666554
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5e-05 Score=84.04 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=84.1
Q ss_pred CCcccEEEccCCCCC-ccCccccC-CcccCcEEeCCCCCCc--ccCccccCCCCCCeEecCCccccccChhhhcCCCCCc
Q 037310 388 MASLRVLTLSDGSLP-GHLLTGIS-NLVSLQHLDPARSKIR--RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLR 463 (656)
Q Consensus 388 l~~L~~L~l~~~~~~-~~~p~~~~-~L~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~ 463 (656)
-.+|+.|++++.... ...|..++ .||+|+.|.+++-.+. ++-.-..+++||..||+++++++.+. + +++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-G-IS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-G-ISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-H-HhccccHH
Confidence 358999999986433 33455555 6999999999987554 33344668899999999999999984 4 99999999
Q ss_pred EEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecc
Q 037310 464 VLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLES 507 (656)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 507 (656)
.|.+.+-.+ .....+.+|-+|++|+.||++...
T Consensus 199 ~L~mrnLe~-----------e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEF-----------ESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCC-----------CchhhHHHHhcccCCCeeeccccc
Confidence 999988774 344667889999999999999654
No 179
>PRK06526 transposase; Provisional
Probab=97.39 E-value=0.00026 Score=68.78 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..-|.|+|++|+|||+||..++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3468999999999999999998876
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.00067 Score=73.98 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC---hhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK---DLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
+++.|+|++|+||||+++.++... .++.+-|++... ..+.......+..++.... ...............
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~l-----~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~--s~~~~F~~fl~~a~~ 183 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKEL-----GIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQ--SQIEVFSEFLLRATN 183 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----hhHHHHHhhhhhhcccccccccchhhhhcccccc--chHHHHHHHHHHHHh
Confidence 579999999999999999999875 344444532110 0000011112222221110 001111111111111
Q ss_pred ---h----hCCccEEEEEeCCcCchh-----hhhhcc-ccCCCCCCCcEEEEEceehh---------hh-------ccc-
Q 037310 83 ---V----MKRKKFVLLLDDIWEPVD-----LAQVGL-LVPSATRASNKVVFTTLEFE---------IG-------GQM- 132 (656)
Q Consensus 83 ---~----l~~~~~LlVlDdv~~~~~-----~~~~~~-~l~~~~~~~~~iliTTR~~~---------~~-------~~~- 132 (656)
. ..+++.+|++|++++... +..+.. ...... .-.-|+|+|-... +. ...
T Consensus 184 ~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls 262 (637)
T TIGR00602 184 KLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIG-RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILE 262 (637)
T ss_pred hhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCC-CceEEEEecCCccccccccccccchhcccCHhHhc
Confidence 1 135778999999965421 222222 111111 2234555552211 10 000
Q ss_pred -CCcceEeeccCChhhhHHHHHHHhcCCCCCCCC----ChHHHHHHHHHHcCCCc
Q 037310 133 -EAHKSFEVECLGYDDSWKLFEVKVGRDTLDSHP----DIPELAKTVVKECGGLP 182 (656)
Q Consensus 133 -~~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~----~~~~~~~~i~~~~~g~P 182 (656)
.....+++++++..+..+.+.+.+......... ..++....|+..++|--
T Consensus 263 ~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 263 EPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred ccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 122357899999999888888777543211111 11345677777777753
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.38 E-value=0.00044 Score=66.66 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
...+.|+|++|+|||.||..+++.. . .....+.++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l-~--~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL-L--AKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEEEH
Confidence 3568999999999999999999987 2 22233566655
No 182
>PRK06921 hypothetical protein; Provisional
Probab=97.38 E-value=0.0006 Score=66.84 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
...-+.++|++|+|||.||.++++.. . ..+...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 34678999999999999999999986 2 221234567664
No 183
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00098 Score=64.27 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=46.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCC---CCCc-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTP---NDFD-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
-++|.++||+|.|||+|++++|+.. .++ .|+. ..+-++... -+-+++.. ..+-.....+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinshs---------LFSKWFsE-----SgKlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSHS---------LFSKWFSE-----SGKLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehhH---------HHHHHHhh-----hhhHHHHHHHHH
Confidence 4789999999999999999999987 443 2332 333443211 11222221 233344444555
Q ss_pred HHhhCC--ccEEEEEeCCcC
Q 037310 81 FKVMKR--KKFVLLLDDIWE 98 (656)
Q Consensus 81 ~~~l~~--~~~LlVlDdv~~ 98 (656)
.+.+.. .=+.+.+|.|++
T Consensus 242 ~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHH
Confidence 555544 445677899954
No 184
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.36 E-value=0.00047 Score=73.54 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
-+++.++|++|.||||||..++++. +| .|+-|+.|...+...+...|...+....... .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~---------------a 384 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD---------------A 384 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc---------------c
Confidence 4689999999999999999999975 45 4678999998888888888877665422110 1
Q ss_pred CCccEEEEEeCCcCc
Q 037310 85 KRKKFVLLLDDIWEP 99 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~ 99 (656)
.+++.-||+|.+|..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 367888999999754
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0047 Score=61.89 Aligned_cols=90 Identities=8% Similarity=0.035 Sum_probs=55.0
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|||+++.+. ....+...+-.-. .++.+|++|.+ ..+... ......+.+.+.+.+++.+.+... +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~---- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G---- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C----
Confidence 466799999998653 2333444333332 45555555554 433322 223356788999999999888652 1
Q ss_pred CCCCChHHHHHHHHHHcCCCchHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
.+ ...+..++..++|.|...
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLA 205 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHH
Confidence 11 222667899999999754
No 186
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.0048 Score=67.32 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=84.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 81 (656)
.+.+.++|+.|+||||+|+.+++.. .-...-+. .+.+.-..+..+.......... ......++......
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~~-------~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~ 109 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPDG-------EPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRD 109 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC-------CCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHH
Confidence 4567789999999999999998765 11110000 0011111222221110000000 00111121111111
Q ss_pred Hh----hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE-Eceehhhhcc-cCCcceEeeccCChhhhHHHHH
Q 037310 82 KV----MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF-TTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 82 ~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.. ..++.-++|+|+++... ....+...+.... ....+|+ ||....+... ......+++.+++.++..+.+.
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-AHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLK 188 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-CCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHH
Confidence 10 13566789999997653 3444444443322 3344444 4443333211 1223468889999999998888
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
..+.......+ .+.+..|++.++|.+.
T Consensus 189 ~i~~~egi~i~---~~al~~ia~~s~G~~R 215 (559)
T PRK05563 189 YILDKEGIEYE---DEALRLIARAAEGGMR 215 (559)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 87755432222 3447788888888764
No 187
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.30 E-value=0.0018 Score=74.01 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCC--CCC-CceEEE-EEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDT--PND-FDLVIW-VVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~~-f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
.-+.++|++|+||||+|+.++++.... ... .+..+| +.++. +. .........++..+.+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------l~------ag~~~~ge~e~~lk~ii 272 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------LQ------AGASVKGEFENRLKSVI 272 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh----------hh------cccccchHHHHHHHHHH
Confidence 346799999999999999999886111 111 122232 32221 00 00001122223333333
Q ss_pred Hhh--CCccEEEEEeCCcCch-------hhhhhccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccCCh
Q 037310 82 KVM--KRKKFVLLLDDIWEPV-------DLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECLGY 145 (656)
Q Consensus 82 ~~l--~~~~~LlVlDdv~~~~-------~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l~~ 145 (656)
..+ .+.+.+|++|+++... ..+.-....|...+..-++|-+|........ ......+.+++++.
T Consensus 273 ~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~ 352 (852)
T TIGR03345 273 DEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDE 352 (852)
T ss_pred HHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCH
Confidence 322 2468999999996542 1111001122222233455556655322111 12335799999999
Q ss_pred hhhHHHHHHHhcCCCCCC-CCChHHHHHHHHHHcCCC
Q 037310 146 DDSWKLFEVKVGRDTLDS-HPDIPELAKTVVKECGGL 181 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~ 181 (656)
+++.+++........... -.-.++....+++.+.++
T Consensus 353 ~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 353 ETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 999999754432211000 111244456677777654
No 188
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0061 Score=61.67 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=53.1
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcE-EEEEceehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNK-VVFTTLEFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~-iliTTR~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.+. ....+...+-.-. +++. |++|++...+... ......+.+.+++.++..+.+... + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--C-
Confidence 456689999998653 3444544444333 4554 4455554444322 223357899999999999988764 1 1
Q ss_pred CCCCChHHHHHHHHHHcCCCchH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
++ ...++..++|.|..
T Consensus 206 ---~~----~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLA 221 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHH
Confidence 11 23457788999864
No 189
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.0002 Score=66.55 Aligned_cols=116 Identities=18% Similarity=0.061 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.++.|+|+.|.||||+|..++.+. ..+...+..+.- ..+.......++..++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 478899999999999999999987 222233333321 111111122344444432221111233444444444 33
Q ss_pred CccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhh
Q 037310 86 RKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEI 128 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~ 128 (656)
++.-++|+|.+.-.. .+++...+......|..|++|.+....
T Consensus 77 ~~~dvviIDEaq~l~-~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLD-KEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCC-HHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 455689999995321 122222222211267789999888654
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0033 Score=67.00 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh--hhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD--LQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.-|.|.|+.|+|||+||+++++.+ . ++....+.+++++.- .....+++.+-.. +...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-------------------fse~ 490 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-------------------FSEA 490 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHHHHH-------------------HHHH
Confidence 468899999999999999999998 3 556667778887542 2344444333322 3344
Q ss_pred hCCccEEEEEeCCcCchh-------------------hhhhccccCCCCCCCcE-EEEEceehhh--hcccCC----cce
Q 037310 84 MKRKKFVLLLDDIWEPVD-------------------LAQVGLLVPSATRASNK-VVFTTLEFEI--GGQMEA----HKS 137 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~-------------------~~~~~~~l~~~~~~~~~-iliTTR~~~~--~~~~~~----~~~ 137 (656)
+...+-++||||++.... +.++...+.. .+.+ .+|.|-.+.. -..+.. ...
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~---~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK---RNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc---cCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 567888999999964311 1111111111 3334 3333333221 111111 124
Q ss_pred EeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 037310 138 FEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITV 188 (656)
Q Consensus 138 ~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 188 (656)
..|+.....+-.++++..+.... .........-+..+|+|+ |.-+.+.
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 67888888887777776665433 111222234488888885 5555444
No 191
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.23 E-value=0.0011 Score=63.05 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRI 53 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 53 (656)
-+++.|+|++|+|||++|.+++... ...-..++|++... .+..++
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl 56 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERF 56 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHH
Confidence 3589999999999999999998876 22346788999875 444433
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.22 E-value=0.00016 Score=63.64 Aligned_cols=41 Identities=29% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHH
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQ 54 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 54 (656)
|.|+|++|+|||+||+.+++.. -....-+.++...+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccce
Confidence 6789999999999999999976 2234456777777776664
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.22 E-value=0.00023 Score=60.90 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0075 Score=60.57 Aligned_cols=90 Identities=6% Similarity=-0.003 Sum_probs=56.0
Q ss_pred CCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceeh-hhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEF-EIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~-~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|+|+++.+.. ...+...+-.-. +++.+|++|.+. .+... ...-..+.+.+++++++.+.+.......
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~- 182 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPR-PNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE- 182 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC-
Confidence 35667889999986633 444444444333 555555555543 33322 2234578999999999998888754211
Q ss_pred CCCCCChHHHHHHHHHHcCCCch
Q 037310 161 LDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
...+...++.++|.|.
T Consensus 183 -------~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 -------ISEILTALRINYGRPL 198 (325)
T ss_pred -------hHHHHHHHHHcCCCHH
Confidence 1125667888999995
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0076 Score=60.34 Aligned_cols=88 Identities=7% Similarity=-0.018 Sum_probs=54.0
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEce-ehhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTL-EFEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR-~~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.+. ....+...+-.-. +++.+|.+|. ...+... ...-..+.+.+++.+++.+.+...- .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPA-PNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C-
Confidence 456689999998653 3444444343333 4455555444 4444322 2334578899999999998886521 1
Q ss_pred CCCCChHHHHHHHHHHcCCCchHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
. .+..+++.++|.|...
T Consensus 182 ~-------~~~~~l~l~~G~p~~A 198 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKT 198 (319)
T ss_pred c-------hHHHHHHHcCCCHHHH
Confidence 1 1456789999999754
No 196
>PRK10536 hypothetical protein; Provisional
Probab=97.20 E-value=0.0017 Score=62.09 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEE
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIW 41 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~w 41 (656)
.+|.+.|++|+|||+||.+++.+. -..+.|+.++-
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 589999999999999999998863 21344554443
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0047 Score=62.86 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=42.3
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceehh-hhc-ccCCcceEeeccCChhhhHHHHHH
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEFE-IGG-QMEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~~-~~~-~~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+.+-++|+|+++.... ...+...+..-. .++.+|++|.+.. +.. .......+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPS-GGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCC-CCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4566799999976533 444555454433 5566666665432 222 123345789999999998888864
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00061 Score=61.33 Aligned_cols=56 Identities=25% Similarity=0.493 Sum_probs=34.0
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
....+++.+|.+..+..+..++.|.+|.+..|.++.+.+..-..+++|..|.+.+|
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 34456666666666666666666666666666666666554444555666666665
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.00072 Score=68.15 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
..-+.|+|++|+|||.||..+++.. - ..++ .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l-~-~~g~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL-L-DRGK-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH-H-HCCC-eEEEEEH
Confidence 3678999999999999999999987 2 2233 5667655
No 200
>PRK04132 replication factor C small subunit; Provisional
Probab=97.19 E-value=0.0055 Score=68.97 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=90.3
Q ss_pred Ec--CCCCcHHHHHHHHhhcccCCCCCC-ceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCCc
Q 037310 11 YG--MGGVGKTTLLTLINNKFFDTPNDF-DLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKRK 87 (656)
Q Consensus 11 ~G--~~GiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 87 (656)
.| |.++||||+|..++++.+. ..+ ..++-++.+.......+. .++..+....+ .-+.+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~----------------~~~~~ 630 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIR-EKVKEFARTKP----------------IGGAS 630 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC----------------cCCCC
Confidence 47 8899999999999998621 122 246677777655554443 33332211110 00124
Q ss_pred cEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhccc-CCcceEeeccCChhhhHHHHHHHhcCCCCCC
Q 037310 88 KFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQM-EAHKSFEVECLGYDDSWKLFEVKVGRDTLDS 163 (656)
Q Consensus 88 ~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~~-~~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~ 163 (656)
.-++|+|+++... +.+.+...+-... ..+++|.++.+ ..+.... .....+++.+++.++..+.+.+.+.......
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~-~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCC-CCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5799999998764 3444444444322 34455544444 3332221 2245789999999999888887765433222
Q ss_pred CCChHHHHHHHHHHcCCCchH
Q 037310 164 HPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 164 ~~~~~~~~~~i~~~~~g~Pla 184 (656)
+ ++....|++.++|.+..
T Consensus 710 ~---~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 710 T---EEGLQAILYIAEGDMRR 727 (846)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 2 44578999999998743
No 201
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0063 Score=65.61 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=80.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
=|.++|++|.|||-+|++|+.+. -.-|+++..+ +++.... ...++.+.+.+.+.=+.
T Consensus 707 GILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP----ELLNMYV-----------GqSE~NVR~VFerAR~A 763 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP----ELLNMYV-----------GQSEENVREVFERARSA 763 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----HHHHHHh-----------cchHHHHHHHHHHhhcc
Confidence 36789999999999999999986 2345666332 2222211 22344445555555467
Q ss_pred ccEEEEEeCCcCc---------------hhhhhhccccCCC---CCCCcEEEEEceehhhhccc----CC-cceEeeccC
Q 037310 87 KKFVLLLDDIWEP---------------VDLAQVGLLVPSA---TRASNKVVFTTLEFEIGGQM----EA-HKSFEVECL 143 (656)
Q Consensus 87 ~~~LlVlDdv~~~---------------~~~~~~~~~l~~~---~~~~~~iliTTR~~~~~~~~----~~-~~~~~l~~l 143 (656)
++++|.||++|+. ....++.+.+..- ...+..||=.|..+...+.. +. .+-+.+++=
T Consensus 764 ~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~ 843 (953)
T KOG0736|consen 764 APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPN 843 (953)
T ss_pred CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCC
Confidence 8999999999864 1122333333322 11444566667666654331 21 234556666
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
+.+++..=..+..-++- ..+++.+ ..+|+++|.-.
T Consensus 844 ~d~esk~~vL~AlTrkF-kLdedVd--L~eiAk~cp~~ 878 (953)
T KOG0736|consen 844 EDAESKLRVLEALTRKF-KLDEDVD--LVEIAKKCPPN 878 (953)
T ss_pred ccHHHHHHHHHHHHHHc-cCCCCcC--HHHHHhhCCcC
Confidence 65555443333322111 1112211 56677777643
No 202
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.013 Score=58.99 Aligned_cols=175 Identities=12% Similarity=0.085 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCC------------CCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCccc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDT------------PNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKS 72 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 72 (656)
.+.+.++|+.|+||+++|..+++..--. ....+-..|+.-.....-..+....+...+..........
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 4788999999999999999887764110 0112223444211000000011111111111011111122
Q ss_pred HHHHHHHHHHhh-----CCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceehhhhcc-cCCcceEeeccCC
Q 037310 73 LLEKAEDIFKVM-----KRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEFEIGGQ-MEAHKSFEVECLG 144 (656)
Q Consensus 73 ~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-~~~~~~~~l~~l~ 144 (656)
.++. +.+.+.+ .+.+-++|+|+++.+.. ...+...+-.-. ...-|++|+....+... ......+++.+++
T Consensus 106 id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~ 183 (314)
T PRK07399 106 LEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLS 183 (314)
T ss_pred HHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCC
Confidence 2222 2333333 35677999999976533 334444333322 22335555544443322 2334578999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
+++..+.+.+...... .+.....++..++|.|.....
T Consensus 184 ~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 184 DEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 9999999987643211 111136789999999965433
No 203
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.16 E-value=0.012 Score=55.62 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..-|.++|..|+|||++++++.+.+ ...+ =.++-|.-..-.++.++... ++.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y-~~~G--LRlIev~k~~L~~l~~l~~~-----------------------l~~-- 103 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEY-ADQG--LRLIEVSKEDLGDLPELLDL-----------------------LRD-- 103 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHH-hhcC--ceEEEECHHHhccHHHHHHH-----------------------Hhc--
Confidence 3457789999999999999999988 2221 23334332222222222222 221
Q ss_pred CCccEEEEEeCCc---CchhhhhhccccCCCC--CC-CcEEEEEceehhhh
Q 037310 85 KRKKFVLLLDDIW---EPVDLAQVGLLVPSAT--RA-SNKVVFTTLEFEIG 129 (656)
Q Consensus 85 ~~~~~LlVlDdv~---~~~~~~~~~~~l~~~~--~~-~~~iliTTR~~~~~ 129 (656)
...||+|.+||+. +......+...+..+. ++ ...|..||..++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 3579999999984 2233444444443321 13 33344455555543
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.00048 Score=67.32 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.|+|++|+|||+||..++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 457799999999999999998764
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.0083 Score=68.33 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-|.++|++|+|||++|+.+++.. ...| +.+.. .+ +.... ...........+...-
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~~----l~~~~-------vGese~~i~~~f~~A~ 543 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----PE----ILSKW-------VGESEKAIREIFRKAR 543 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----HH----Hhhcc-------cCcHHHHHHHHHHHHH
Confidence 4457889999999999999999986 2222 22211 11 11111 1111122222233333
Q ss_pred CCccEEEEEeCCcCch--------------hhhhhccccCCC-CCCCcEEEEEceehhhhccc-----CCcceEeeccCC
Q 037310 85 KRKKFVLLLDDIWEPV--------------DLAQVGLLVPSA-TRASNKVVFTTLEFEIGGQM-----EAHKSFEVECLG 144 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--------------~~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~~-----~~~~~~~l~~l~ 144 (656)
...+.+|+||+++... ...++...+... ...+..||-||......+.. .-...+.++..+
T Consensus 544 ~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd 623 (733)
T TIGR01243 544 QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPD 623 (733)
T ss_pred hcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcC
Confidence 4567999999996431 011222223221 11334455566554433211 123467888888
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.++-.++|..+..+.......+ ...+++.+.|+-
T Consensus 624 ~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 624 EEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 9999999987665443222222 466778888764
No 206
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.16 E-value=0.0021 Score=61.85 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC----CCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC-------CCcccHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN----DFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS-------WNSKSLL 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 74 (656)
.++.|+|++|+|||++|.+++... .... .=..++|+......+...+. .++......... ....+.+
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 589999999999999999998765 1111 11567899887665554443 233322111000 0112334
Q ss_pred HHHHHHHHhh----CCccEEEEEeCCc
Q 037310 75 EKAEDIFKVM----KRKKFVLLLDDIW 97 (656)
Q Consensus 75 ~~~~~l~~~l----~~~~~LlVlDdv~ 97 (656)
+....+.... ..+.-++|+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4444444433 2355689999984
No 207
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00037 Score=62.65 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=47.6
Q ss_pred CcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc--cccCCCCCCeEec
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM--ELKYLVHLKRLNL 443 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l 443 (656)
+...+|+.+|++..++. |..++.|..|.+..|.+...-|.--..+++|+.|.+.+|++.++-+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44455555554443332 4445555555555553333333222234455555555555554422 2344455555555
Q ss_pred CCccccccC---hhhhcCCCCCcEEEeeecC
Q 037310 444 EFTRLTRIP---QEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 444 ~~~~~~~l~---~~~l~~l~~L~~L~l~~~~ 471 (656)
-+|+++... ...+.++++|+.|++.+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 554333221 1223445555555555443
No 208
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=8.8e-05 Score=62.22 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=76.1
Q ss_pred cceeEeecchhhHhhhccC--CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeC
Q 037310 343 KEVTRMSLMQIRIRRLLES--SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDP 420 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l 420 (656)
.++...++++|.+.++|.. ..++..++|++..|.++++|.. +..++.|+.|+++.| .....|..+-.|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 3677888999999888732 7788999999999999999887 999999999999999 56667778888999999999
Q ss_pred CCCCCcccCcc
Q 037310 421 ARSKIRRLPME 431 (656)
Q Consensus 421 ~~~~~~~lp~~ 431 (656)
.++.+.++|-.
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 99999988876
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.13 E-value=0.0047 Score=70.28 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||++|+.+++.. ...| +.++.. ++ .... ...........+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------~i----~~~~-------~g~~~~~l~~lf~~a~ 268 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------EI----MSKY-------YGESEERLREIFKEAE 268 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------HH----hccc-------ccHHHHHHHHHHHHHH
Confidence 3568899999999999999999976 2222 223221 11 1000 0111122222333333
Q ss_pred CCccEEEEEeCCcCch-------------hhhhhccccCCCCCCCcEEEE-Eceehhhhc-cc---C-CcceEeeccCCh
Q 037310 85 KRKKFVLLLDDIWEPV-------------DLAQVGLLVPSATRASNKVVF-TTLEFEIGG-QM---E-AHKSFEVECLGY 145 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~-~~---~-~~~~~~l~~l~~ 145 (656)
.+.+.+|+||+++... ...++...+......+..++| ||....... .. + -...+.++..+.
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 4567899999986431 112233333322213444555 444332111 11 1 123567777888
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
++..+++............ .....+++.+.|.--
T Consensus 349 ~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 8888888866543321111 125778888888653
No 210
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.13 E-value=0.013 Score=59.92 Aligned_cols=110 Identities=14% Similarity=0.194 Sum_probs=72.5
Q ss_pred ccEEEEEeCCcCchh-----hhhh---ccccCCCCCCCcEEEEEceehhhhccc------CCcceEeeccCChhhhHHHH
Q 037310 87 KKFVLLLDDIWEPVD-----LAQV---GLLVPSATRASNKVVFTTLEFEIGGQM------EAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 87 ~~~LlVlDdv~~~~~-----~~~~---~~~l~~~~~~~~~iliTTR~~~~~~~~------~~~~~~~l~~l~~~ea~~L~ 152 (656)
+|-++||||+....+ ++.+ ...+-.. +-.+||++|-+......+ ...+.+.|...+++.|.++.
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~--nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQN--NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhc--CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 378999999854311 1111 1112222 557899999886654322 34567889999999999999
Q ss_pred HHHhcCCCCC------------CC-----CChHHHHHHHHHHcCCCchHHHHHHHHHcCCCCh
Q 037310 153 EVKVGRDTLD------------SH-----PDIPELAKTVVKECGGLPLALITVGRAMASKKTP 198 (656)
Q Consensus 153 ~~~~~~~~~~------------~~-----~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~ 198 (656)
..+....... .. ..........+...||=-.-+..++++++...++
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 9998654210 00 1244556778888999999999999999876443
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.13 E-value=0.00032 Score=64.25 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
..-+.|+|++|+|||.||..+++.. - ...+ .+.|+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~-~~g~-~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-I-RKGY-SVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-H-HTT---EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-c-cCCc-ceeEeec
Confidence 3568999999999999999999876 1 2333 3556644
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0014 Score=63.10 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
...+.++|.+|+|||+||..+++.. . ..-..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l-~--~~g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL-L--LRGKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEH
Confidence 3578999999999999999999987 2 22235566643
No 213
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.11 E-value=0.0018 Score=64.17 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCC-CCCC--CCc--ccHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGL-FSRS--WNS--KSLLEKAED 79 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~--~~~--~~~~~~~~~ 79 (656)
+..|.|.|-+|.|||.+.+++.+.. --..+|+++-..++.+.+...|+.+... +.+. ... .........
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~ 103 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYL 103 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHH
Confidence 4567999999999999999999875 2235799999999999999999999852 1111 111 122333444
Q ss_pred HHHh--hC--CccEEEEEeCCcCchhhhhhccc----cCCCCCCCcEEEEEceehhhhc---ccCCcc--eEeeccCChh
Q 037310 80 IFKV--MK--RKKFVLLLDDIWEPVDLAQVGLL----VPSATRASNKVVFTTLEFEIGG---QMEAHK--SFEVECLGYD 146 (656)
Q Consensus 80 l~~~--l~--~~~~LlVlDdv~~~~~~~~~~~~----l~~~~~~~~~iliTTR~~~~~~---~~~~~~--~~~l~~l~~~ 146 (656)
+.++ .. ++.++||+||++...|.+...-. ++........+|+++-...... +.+... ++..+.-+.+
T Consensus 104 l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~ 183 (438)
T KOG2543|consen 104 LVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVE 183 (438)
T ss_pred HHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHH
Confidence 4442 22 35899999999877665552110 1111102233444444433221 123332 4567888888
Q ss_pred hhHHHHHHH
Q 037310 147 DSWKLFEVK 155 (656)
Q Consensus 147 ea~~L~~~~ 155 (656)
|..+++.+.
T Consensus 184 e~~~Il~~~ 192 (438)
T KOG2543|consen 184 ETQVILSRD 192 (438)
T ss_pred HHHHHHhcC
Confidence 988888763
No 214
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.017 Score=55.10 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=33.6
Q ss_pred eEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 137 SFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 137 ~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
..+++--+.+|-.++..+.+..-..... ++.+.+|++...|-|.-
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRI 219 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHH
Confidence 4678888899999999888754432332 34589999999999953
No 215
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.09 E-value=0.0019 Score=63.04 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC----CCCceEEEEEeCChhhHHHHHHHHHHHhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP----NDFDLVIWVVVSKDLQLKRIQDCIARKIG 62 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (656)
.+.-|+|++|+|||+||.+++-.. ... +.-..++||+-...+...++. +|++...
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred cEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 478899999999999998887543 221 223468999988888887775 4565543
No 216
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0028 Score=61.44 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCC----CceEEEEEeCChhhHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPND----FDLVIWVVVSKDLQLKRI 53 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 53 (656)
.++.|+|++|+|||++|.+++... ..... -..++|++.....+..++
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH
Confidence 588999999999999999998553 22221 357889998776555444
No 217
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.08 E-value=0.00091 Score=61.36 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
+++.+-+.|.||+|+||||=+..+++.. -...+-+++.-.+.|....+.-+...|-.=.....
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv---------------- 107 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKV---------------- 107 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHHHHHHHhhc----------------
Confidence 4677889999999999999999888887 33345567777776665544433322211000000
Q ss_pred HhhCCccEEEEEeCCcCchhh
Q 037310 82 KVMKRKKFVLLLDDIWEPVDL 102 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv~~~~~~ 102 (656)
..-.++.-++|||..|++.+-
T Consensus 108 ~lp~grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 108 TLPPGRHKIIILDEADSMTAG 128 (333)
T ss_pred cCCCCceeEEEeeccchhhhH
Confidence 001356778999999988553
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0064 Score=61.69 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
+.+++|+|+|++|+||||++..++... . ... ..+..+...... ...+-+...++..+.+... ..+.....+.+.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v--~~d~~~L~~aL~ 313 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAAMTRALT 313 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEe--cCCHHHHHHHHH
Confidence 346899999999999999999999876 2 122 245566654432 2223333444444432211 123333333333
Q ss_pred HhhC-CccEEEEEeCCc
Q 037310 82 KVMK-RKKFVLLLDDIW 97 (656)
Q Consensus 82 ~~l~-~~~~LlVlDdv~ 97 (656)
..-. .+.=++++|-..
T Consensus 314 ~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 YFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHhccCCCEEEEeCcc
Confidence 3221 123467778764
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.008 Score=59.09 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-|.|.|++|+|||++|+.++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999854
No 220
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.04 E-value=0.0021 Score=61.78 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS 45 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 45 (656)
.++.|+|++|+|||++|.+++... ...-..++|++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC
Confidence 589999999999999999999876 2234568899887
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0075 Score=60.92 Aligned_cols=68 Identities=3% Similarity=-0.005 Sum_probs=38.1
Q ss_pred CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehh-hhccc-CCcceEeeccCChhhhHHHHHH
Q 037310 86 RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFE-IGGQM-EAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 86 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~~-~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
+++-++|+|+++.. .....+...+.... .++.+|++|.+.. +.... .....+.+.+++.+++.+.+.+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 34445567888654 22333333333322 3455666666543 32221 2234688999999999888865
No 222
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.03 E-value=0.0018 Score=64.54 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCC---CCCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSR---SWNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~l~~ 82 (656)
+++.|+|++|+||||||.+++... . ..-..++|++....++.. .++.++.... -..+...++....+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~-~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEA-Q--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 588999999999999999988776 2 223456798877655543 3444433211 1122345555555555
Q ss_pred hhC-CccEEEEEeCCc
Q 037310 83 VMK-RKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~ 97 (656)
... +..-++|+|.+-
T Consensus 128 li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVA 143 (321)
T ss_pred HhhccCCcEEEEcchh
Confidence 543 456799999984
No 223
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00038 Score=66.25 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=51.4
Q ss_pred cceeEeecchhhHhh---hcc-CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc-CccccCCcccCcE
Q 037310 343 KEVTRMSLMQIRIRR---LLE-SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH-LLTGISNLVSLQH 417 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~---l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~L~~L~~ 417 (656)
.+++.+++.+|.+.. +-+ ..+++.|++|+++.|+++..........++|++|-|.++..... .-+.+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 467777777776543 222 26778888888888876654333223567788888877754432 3344556666666
Q ss_pred EeCCCCCC
Q 037310 418 LDPARSKI 425 (656)
Q Consensus 418 L~l~~~~~ 425 (656)
|.++.|+.
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 66666643
No 224
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.99 E-value=0.002 Score=64.36 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
+++-|+|++|+||||||.+++... . ..-..++|++....++.. .++.++..... ..+...++....+..
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~-~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEA-Q--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 588899999999999999988776 2 233467799887766643 33334332111 122345555555555
Q ss_pred hh-CCccEEEEEeCCc
Q 037310 83 VM-KRKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv~ 97 (656)
.. ++..-++|+|.+-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 44 3456799999983
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.012 Score=59.70 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=55.3
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++-++|+|+++.+. ....+...+-.-. +++.+|.+|.+ ..+... ......+.+.+++.+++.+.+.+..+.
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-- 182 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPP-ENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-- 182 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC--
Confidence 3567789999998653 3444444443333 45555555544 434322 223346889999999998888653211
Q ss_pred CCCCCChHHHHHHHHHHcCCCch
Q 037310 161 LDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
+ .+.+..+++.++|.|.
T Consensus 183 ---~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 183 ---S---QDALLAALRLSAGAPG 199 (334)
T ss_pred ---C---HHHHHHHHHHcCCCHH
Confidence 1 2236778999999995
No 226
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.97 E-value=0.003 Score=60.41 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
-.++.|.|++|+||||+|.+++... ...-..++|++.....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 3588999999999999999999876 2223457788765443
No 227
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.97 E-value=0.004 Score=70.67 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccC--CCCCC-ceEEE-EEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFD--TPNDF-DLVIW-VVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~--~~~~f-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
-+.++|++|+|||++|+.++++... +...+ +..+| ++++ .+.... ......++..+.+.+
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l~a~~------~~~g~~e~~l~~i~~ 268 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SLLAGT------KYRGDFEERLKAVVS 268 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HHhhhc------cccchHHHHHHHHHH
Confidence 4678999999999999999987611 11111 33343 2211 111100 011234444444444
Q ss_pred hh-CCccEEEEEeCCcCch--------hh--hh-hccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccC
Q 037310 83 VM-KRKKFVLLLDDIWEPV--------DL--AQ-VGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECL 143 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv~~~~--------~~--~~-~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l 143 (656)
.+ ..++.+|++|+++... +. .. +...+.. ..-++|-+|....+... ......++++..
T Consensus 269 ~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~---g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p 345 (731)
T TIGR02639 269 EIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS---GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEP 345 (731)
T ss_pred HHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC---CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCC
Confidence 44 3467899999997331 11 11 2222221 22344444443222110 012346899999
Q ss_pred ChhhhHHHHHHHhc
Q 037310 144 GYDDSWKLFEVKVG 157 (656)
Q Consensus 144 ~~~ea~~L~~~~~~ 157 (656)
+.++..+++.....
T Consensus 346 ~~~~~~~il~~~~~ 359 (731)
T TIGR02639 346 SIEETVKILKGLKE 359 (731)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999986553
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.93 E-value=0.009 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++.+.++|+.|+||+++|..+++..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998775
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.92 E-value=0.0052 Score=56.61 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC------------C-Cccc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS------------W-NSKS 72 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~-~~~~ 72 (656)
.+++|.|+.|.|||||++.++...+ ...+.+++....... ....+.+.++.-.+. . ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~---~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGVPVSD---LEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCEEHHH---HHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4789999999999999999998761 122334433211111 111111111100000 0 0111
Q ss_pred HHHHHHHHHHhhCCccEEEEEeCCcCchh---hhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEee
Q 037310 73 LLEKAEDIFKVMKRKKFVLLLDDIWEPVD---LAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV 140 (656)
Q Consensus 73 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l 140 (656)
-+...-.+.+.+-.++-++++|+.-+--| .+.+...+.... .+..||++|.+...... ..+.+.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12222335555667788999999854322 222333333323 35678888888776543 3444444
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.91 E-value=0.0027 Score=63.88 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
+++-|+|++|+||||||.+++... . ..-..++||+....++.. .++.++..... ..+...++....+..
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~-~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEA-Q--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 588899999999999999998776 2 233567899887766653 34444332111 122345555555555
Q ss_pred hhC-CccEEEEEeCCc
Q 037310 83 VMK-RKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~ 97 (656)
... +..-++|+|.+-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 543 456799999984
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.91 E-value=0.002 Score=59.85 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV 43 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 43 (656)
.++|.+.|++|.|||.||.+.+.+. -..+.|+.++++.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 4689999999999999999998776 4457888888764
No 232
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.90 E-value=0.0037 Score=62.67 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC----CCCceEEEEEeCChhhHHHHHHHHHHHhCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP----NDFDLVIWVVVSKDLQLKRIQDCIARKIGL 63 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (656)
+++-|+|++|+||||||.+++-.. ... ..-..++||+....++..++. .+++.++.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 578899999999999999887543 211 112468899998877777764 45665544
No 233
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.89 E-value=0.0063 Score=55.56 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCC--C---CCC-c-eEEEEEeCChhhHHHHHHHHHHHhCCCCC--C--CCccc-H
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDT--P---NDF-D-LVIWVVVSKDLQLKRIQDCIARKIGLFSR--S--WNSKS-L 73 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~--~---~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~-~ 73 (656)
.+++|.|+.|+|||||.+.+..+.-.+ . ..+ . .+.|+. + ...+..++.... . ...-. -
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 579999999999999999986321000 0 011 1 133431 1 344555553211 1 11111 2
Q ss_pred HHHHHHHHHhhCCc--cEEEEEeCCcCc---hhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEee
Q 037310 74 LEKAEDIFKVMKRK--KFVLLLDDIWEP---VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV 140 (656)
Q Consensus 74 ~~~~~~l~~~l~~~--~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l 140 (656)
+...-.+.+.+-.+ +-++++|+.-+- ...+.+...+......+..||++|.+...... ..+.+.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22223344555556 778999997432 22223333333221145668888888766543 3444555
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.048 Score=55.82 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHh----CCCCCCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKI----GLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~l 80 (656)
..-+-|.|-+|.|||.+...++.+. .....-..++++++..-....++...|...+ ...+ ...+....+
T Consensus 175 ~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~------~~~~~~~~~ 247 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG------TGMQHLEKF 247 (529)
T ss_pred CcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc------hhHHHHHHH
Confidence 4568899999999999999999887 1111113567888765444444444444444 3222 125556666
Q ss_pred HHhhCCc--cEEEEEeCCcCchhh--hhhccc--cCCCCCCCcEEEEEc-ee-----hhhhcc-----cCCcceEeeccC
Q 037310 81 FKVMKRK--KFVLLLDDIWEPVDL--AQVGLL--VPSATRASNKVVFTT-LE-----FEIGGQ-----MEAHKSFEVECL 143 (656)
Q Consensus 81 ~~~l~~~--~~LlVlDdv~~~~~~--~~~~~~--l~~~~~~~~~iliTT-R~-----~~~~~~-----~~~~~~~~l~~l 143 (656)
.+...+. -+|+|+|.+|....- ..+... |+.. +++++|+.- -+ ...+.. .-....+..++-
T Consensus 248 ~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PY 325 (529)
T KOG2227|consen 248 EKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPY 325 (529)
T ss_pred HHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCC
Confidence 6666543 589999999754211 111111 3332 555544321 11 111111 123457888999
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
+.++..++|..++..... ...+...++-+++++.|.
T Consensus 326 Tk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 326 TKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAP 361 (529)
T ss_pred CHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccC
Confidence 999999999999865441 222223344455555443
No 235
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0018 Score=59.41 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CC---------cccH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WN---------SKSL 73 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~---------~~~~ 73 (656)
.+++|+|+.|.|||||++.++... ....+.+++......... ..+...++.-.++ .. ...-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 479999999999999999999875 122344444321110000 0111111100000 00 1111
Q ss_pred HHHHHHHHHhhCCccEEEEEeCCcCchh---hhhhccccCCCCCCCcEEEEEceehhhhc
Q 037310 74 LEKAEDIFKVMKRKKFVLLLDDIWEPVD---LAQVGLLVPSATRASNKVVFTTLEFEIGG 130 (656)
Q Consensus 74 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTTR~~~~~~ 130 (656)
+...-.+.+.+..++-++++|+.-..-| .+.+...+......|..+|++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222346666777888999999853322 22333333332214567888888876544
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.024 Score=53.28 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++-|..+|++|.|||.+|+++++.. +- -++.+.. .+ -|.+-.+ +...+..+.+.+.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~---kv-----p~l~vka----t~---liGehVG--------dgar~Ihely~rA 206 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEA---KV-----PLLLVKA----TE---LIGEHVG--------DGARRIHELYERA 206 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhccc---CC-----ceEEech----HH---HHHHHhh--------hHHHHHHHHHHHH
Confidence 36778899999999999999999986 21 2233311 11 1111111 1111111222222
Q ss_pred hCCccEEEEEeCCcCc----------hhhhhhcc----ccCCC-CCCCcEEEEEceehhhhccc---CCcceEeeccCCh
Q 037310 84 MKRKKFVLLLDDIWEP----------VDLAQVGL----LVPSA-TRASNKVVFTTLEFEIGGQM---EAHKSFEVECLGY 145 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~----------~~~~~~~~----~l~~~-~~~~~~iliTTR~~~~~~~~---~~~~~~~l~~l~~ 145 (656)
-+.-++++.+|.+|-. .|...+.+ .+... ...|.+.|-.|.+...++.. .-.+.++..--++
T Consensus 207 ~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~ 286 (368)
T COG1223 207 RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPND 286 (368)
T ss_pred HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCCh
Confidence 2346899999998643 11111111 12111 12566666666666554432 1123567777778
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
+|-.+++...+..-....... .+.++.+.+|..
T Consensus 287 eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 287 EERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred HHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 999999998886544332222 567777777754
No 237
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.86 E-value=0.0033 Score=62.89 Aligned_cols=101 Identities=26% Similarity=0.221 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-+.|+|+.|+|||.||.++++.. . ..++. +.|+++. .+...+...... ....+ .+.. +
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l-~-~~g~~-v~~~~~~------~l~~~lk~~~~~-------~~~~~---~l~~-l 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL-A-KKGVS-STLLHFP------EFIRELKNSISD-------GSVKE---KIDA-V 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H-HcCCC-EEEEEHH------HHHHHHHHHHhc-------CcHHH---HHHH-h
Confidence 4568999999999999999999997 2 33343 4555542 333344333321 11122 2222 2
Q ss_pred CCccEEEEEeCCcCc--hhhhh--hcccc-CCCCCCCcEEEEEceeh
Q 037310 85 KRKKFVLLLDDIWEP--VDLAQ--VGLLV-PSATRASNKVVFTTLEF 126 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~--~~~~~--~~~~l-~~~~~~~~~iliTTR~~ 126 (656)
.+.-||||||+.-. .+|.. +...+ ...-..+..+|+||.-.
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 35568999999633 33432 32222 21101334577777654
No 238
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.86 E-value=0.0038 Score=57.20 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh--hhHHHHHHHHHHHhCCCCCCC--C--------cccH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD--LQLKRIQDCIARKIGLFSRSW--N--------SKSL 73 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~--~--------~~~~ 73 (656)
.+++|.|+.|.|||||++.++... ....+.+++..... ....... ..+..-.++. . -..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 478999999999999999999875 12233333321110 0111111 1111100000 0 1111
Q ss_pred HHHHHHHHHhhCCccEEEEEeCCcCc---hhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEee
Q 037310 74 LEKAEDIFKVMKRKKFVLLLDDIWEP---VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV 140 (656)
Q Consensus 74 ~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l 140 (656)
+...-.+.+.+-.++-++++|+.-.- .....+...+......+..||++|.+...... ..+.+.+
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22223355556667778999998533 22223333333222145677888877766542 3344444
No 239
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.86 E-value=0.0067 Score=59.70 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh-HHHHHHHHHHHhCCCCCC-CCcccH-HHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ-LKRIQDCIARKIGLFSRS-WNSKSL-LEKAED 79 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-~~~~~~-~~~~~~ 79 (656)
...++++++|++|+||||.+..++..+ . ..-..+..+....... ..+-+...++..+.+... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 456899999999999999999999877 2 2223577777654222 223334455555432111 111122 222233
Q ss_pred HHHhhCCccEEEEEeCCc
Q 037310 80 IFKVMKRKKFVLLLDDIW 97 (656)
Q Consensus 80 l~~~l~~~~~LlVlDdv~ 97 (656)
+.....+..=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 443334445678899874
No 240
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0076 Score=64.78 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
++++++||+|||||.|++.+++-. ...|- -++++.-.+-.++ ++...+=...=+...++.+.+. +
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEI--------RGHRRTYIGamPGrIiQ~mkka-~ 415 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEI--------RGHRRTYIGAMPGKIIQGMKKA-G 415 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHh--------ccccccccccCChHHHHHHHHh-C
Confidence 689999999999999999999976 33342 2333333333332 1111111111122233333333 4
Q ss_pred CccEEEEEeCCcCchhh------hhh-------------cccc--CCCCCCCcEEEEEceehh---hhcccCCcceEeec
Q 037310 86 RKKFVLLLDDIWEPVDL------AQV-------------GLLV--PSATRASNKVVFTTLEFE---IGGQMEAHKSFEVE 141 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~~------~~~-------------~~~l--~~~~~~~~~iliTTR~~~---~~~~~~~~~~~~l~ 141 (656)
.+--+++||.+|.+..- .++ .+++ +-. -...+.|+|-+.. .+..+...+.+++.
T Consensus 416 ~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD--LS~VmFiaTANsl~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 416 VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD--LSKVMFIATANSLDTIPAPLLDRMEVIRLS 493 (782)
T ss_pred CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc--hhheEEEeecCccccCChHHhcceeeeeec
Confidence 45678999999754110 001 1111 111 1123555555532 12222344689999
Q ss_pred cCChhhhHHHHHHHh
Q 037310 142 CLGYDDSWKLFEVKV 156 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~ 156 (656)
+-+++|-.++-+++.
T Consensus 494 gYt~~EKl~IAk~~L 508 (782)
T COG0466 494 GYTEDEKLEIAKRHL 508 (782)
T ss_pred CCChHHHHHHHHHhc
Confidence 999999999888875
No 241
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.85 E-value=0.035 Score=63.48 Aligned_cols=25 Identities=44% Similarity=0.456 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++.++|++|+|||++|+.+++..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999986
No 242
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.85 E-value=0.0041 Score=55.16 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC---hhhHHHHHHHHHHHhCC----CCCCCCcccHH----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK---DLQLKRIQDCIARKIGL----FSRSWNSKSLL---- 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~----~~~~~~~~~~~---- 74 (656)
.+|-|++..|.||||+|...+-+. ....+ .+.++.+-. ...-..++..+- .+.. .+......+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 478888999999999999998876 22233 344444322 222222333321 0100 00000001111
Q ss_pred ---HHHHHHHHhhC-CccEEEEEeCCcC-----chhhhhhccccCCCCCCCcEEEEEceehh
Q 037310 75 ---EKAEDIFKVMK-RKKFVLLLDDIWE-----PVDLAQVGLLVPSATRASNKVVFTTLEFE 127 (656)
Q Consensus 75 ---~~~~~l~~~l~-~~~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~iliTTR~~~ 127 (656)
+..+...+.+. +.-=|+|||++-. .-+.+.+...+.+.. .+..+|+|.|...
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-EDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-CCCEEEEECCCCC
Confidence 12222333333 3445999999832 233444555555444 7778999999965
No 243
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.84 E-value=0.0019 Score=58.43 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh--hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.+++|.|+.|.|||||.+.++... ....+.+++...... +..+. ..+.++. .. .-..-+...-.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~-~~--qLS~G~~qrl~lara 96 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAM-VY--QLSVGERQMVEIARA 96 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEE-EE--ecCHHHHHHHHHHHH
Confidence 478999999999999999999875 223344554321111 11111 0111111 00 022222333345566
Q ss_pred hCCccEEEEEeCCcCc---hhhhhhccccCCCCCCCcEEEEEceehhhh
Q 037310 84 MKRKKFVLLLDDIWEP---VDLAQVGLLVPSATRASNKVVFTTLEFEIG 129 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~~~iliTTR~~~~~ 129 (656)
+-.++-++++|+.-+- .....+...+......+..||++|.+....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6677888999998533 222233333322221456788888776643
No 244
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.84 E-value=0.006 Score=55.41 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCC--C---ceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPND--F---DLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~--f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
.+++|.|+.|.|||||++.++...+...+. + ..+.++.-........+...+... .. .....-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WD--DVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CC--CCCCHHHHHHHHH
Confidence 478999999999999999999875211111 1 123333211111111222222110 11 1122223333445
Q ss_pred HHhhCCccEEEEEeCCcCchh---hhhhccccCCCCCCCcEEEEEceehhhh
Q 037310 81 FKVMKRKKFVLLLDDIWEPVD---LAQVGLLVPSATRASNKVVFTTLEFEIG 129 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTTR~~~~~ 129 (656)
.+.+-.++-++++|+.-+.-| ...+...+... +..+|++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH
Confidence 566667778899999753322 22233333322 35677777776554
No 245
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.0036 Score=57.17 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.+++|.|+.|.|||||++.++.-. . ...+.+++.... ++.......-..-+...-.+.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~-~---p~~G~i~~~g~~--------------i~~~~q~~~LSgGq~qrv~laral~ 87 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL-I---PNGDNDEWDGIT--------------PVYKPQYIDLSGGELQRVAIAAALL 87 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC-C---CCCcEEEECCEE--------------EEEEcccCCCCHHHHHHHHHHHHHh
Confidence 489999999999999999998865 1 122222221100 0000000001112223334555666
Q ss_pred CccEEEEEeCCcCchh---hhhhccccCCCCC-CCcEEEEEceehhhhc
Q 037310 86 RKKFVLLLDDIWEPVD---LAQVGLLVPSATR-ASNKVVFTTLEFEIGG 130 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~-~~~~iliTTR~~~~~~ 130 (656)
.++-++++|+.-+.-| ...+...+..... .+..||++|-+.....
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 7778899999743322 2222222222111 2356777777765544
No 246
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.79 E-value=0.0045 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
||.|+|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999976
No 247
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.77 E-value=0.0073 Score=55.71 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE---eCChhhHHHH------HHHHHHHhCCCC---CCC-Cccc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV---VSKDLQLKRI------QDCIARKIGLFS---RSW-NSKS 72 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~---~~~-~~~~ 72 (656)
.+++|.|+.|.|||||++.++... ....+.+++. +.. .+.... ...+++.++... ... .-..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 489999999999999999999875 1223333332 211 111111 111344443321 001 1112
Q ss_pred HHHHHHHHHHhhCCccEEEEEeCCcCc---hhhhhhccccCCCCCC-CcEEEEEceehhhh
Q 037310 73 LLEKAEDIFKVMKRKKFVLLLDDIWEP---VDLAQVGLLVPSATRA-SNKVVFTTLEFEIG 129 (656)
Q Consensus 73 ~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~-~~~iliTTR~~~~~ 129 (656)
-+...-.+.+.+-.++-++++|+.-.- ...+.+...+...... +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222333455666778889999998432 2233333333332212 56788888776654
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0026 Score=58.61 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999765
No 249
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.77 E-value=0.0062 Score=60.46 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
..++++|+|++|+||||++..++..+ .....-..+..++..... ...+.+....+.++.+... ..+..+..+.+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~--~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV--ARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec--cCCHHHHHHHHHH
Confidence 45799999999999999999998876 222122356677765432 2233344445544433221 1233333333333
Q ss_pred hhCCccEEEEEeCC
Q 037310 83 VMKRKKFVLLLDDI 96 (656)
Q Consensus 83 ~l~~~~~LlVlDdv 96 (656)
+.+ .=++++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 457777754
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0087 Score=61.11 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-.+++++|++|+||||++.+++.+. ..+.....+..+..... ....+-+..+++.++.+..... ...+....+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~--~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK--DGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecC--CcccHHHHHH-H
Confidence 4689999999999999999999876 22222345666765442 2344555666666665433211 1122222232 2
Q ss_pred hCCccEEEEEeCCc
Q 037310 84 MKRKKFVLLLDDIW 97 (656)
Q Consensus 84 l~~~~~LlVlDdv~ 97 (656)
+.++ -++++|...
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 3444 556699984
No 251
>PRK10867 signal recognition particle protein; Provisional
Probab=96.76 E-value=0.0058 Score=63.86 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|.++|++|+||||.|..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998888766
No 252
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0086 Score=57.24 Aligned_cols=121 Identities=19% Similarity=0.142 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC-----hhhHHHHHHHHHHHhCCCCCC----CCcccHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK-----DLQLKRIQDCIARKIGLFSRS----WNSKSLLEK 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 76 (656)
.+++|+|++|+||||+|+.+..-. ..-.+.+++...+ .....+....++...+..... +..-.-.|.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 579999999999999999999876 2233344443221 222334445556655532211 011122222
Q ss_pred H-HHHHHhhCCccEEEEEeCCcCchhh---hhhccc---cCCCCCCCcEEEEEceehhhhccc
Q 037310 77 A-EDIFKVMKRKKFVLLLDDIWEPVDL---AQVGLL---VPSATRASNKVVFTTLEFEIGGQM 132 (656)
Q Consensus 77 ~-~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~---l~~~~~~~~~iliTTR~~~~~~~~ 132 (656)
+ -.+.+.+.-++-++|.|..-+.-|. .++... +... .+-..+..|-+-.+++.+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhh
Confidence 2 2366777889999999998544332 222222 2222 455567777776666554
No 253
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.014 Score=60.10 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGL 63 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~ 63 (656)
..+++++|++|+||||+|.+++..+ ....++ .+..+...... .....+...++.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~-~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgv 280 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY-FLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEecccchhhhHHHHHHHHHHhcCC
Confidence 4689999999999999999998764 112222 34445443322 223334444444443
No 254
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.0058 Score=53.99 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.+++|.|+.|.|||||++.++... ....+.+|+.... .+.. .. .-..-+...-.+.+.+-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~-------------~i~~-~~--~lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV-------------KIGY-FE--QLSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE-------------EEEE-Ec--cCCHHHHHHHHHHHHHh
Confidence 578999999999999999999876 1223344432210 0000 00 01111222233455566
Q ss_pred CccEEEEEeCCcCc---hhhhhhccccCCCCCCCcEEEEEceehhhh
Q 037310 86 RKKFVLLLDDIWEP---VDLAQVGLLVPSATRASNKVVFTTLEFEIG 129 (656)
Q Consensus 86 ~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~~~iliTTR~~~~~ 129 (656)
.++-++++|+.-.- ...+.+...+... +..|+++|.+....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~ 130 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFL 130 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH
Confidence 67788999998533 2233333333332 24677777766544
No 255
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.011 Score=61.06 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++=|.++|++|.|||-||++++-+.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc
Confidence 4568899999999999999999986
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0041 Score=60.51 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..-+.++|++|+|||-||.+++++. - +.++ .+.++++ .++...+...... ......+.+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~~~------~el~~~Lk~~~~~----------~~~~~~l~~~l 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFITA------PDLLSKLKAAFDE----------GRLEEKLLREL 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEEEH------HHHHHHHHHHHhc----------CchHHHHHHHh
Confidence 4468899999999999999999998 2 3333 4556543 3444444443321 11111222211
Q ss_pred CCccEEEEEeCCcC
Q 037310 85 KRKKFVLLLDDIWE 98 (656)
Q Consensus 85 ~~~~~LlVlDdv~~ 98 (656)
.+-=||||||+.-
T Consensus 166 -~~~dlLIiDDlG~ 178 (254)
T COG1484 166 -KKVDLLIIDDIGY 178 (254)
T ss_pred -hcCCEEEEecccC
Confidence 2345899999854
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.72 E-value=0.013 Score=52.60 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-----------------------------------------
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV----------------------------------------- 44 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~----------------------------------------- 44 (656)
.+++|+|++|.||||+.+.+|... +. -.+.+|+..
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 478999999999999999998775 11 112222210
Q ss_pred ----CChhhHHHHHHHHHHHhCCCCCC----CCcccHHHHHHHHHHhhCCccEEEEEeCC----cCchhhhhhccccCCC
Q 037310 45 ----SKDLQLKRIQDCIARKIGLFSRS----WNSKSLLEKAEDIFKVMKRKKFVLLLDDI----WEPVDLAQVGLLVPSA 112 (656)
Q Consensus 45 ----~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~~~~~l~~~ 112 (656)
.....+++-....+...+..... .....-++.--.+.+.+-+++-+|+-|+. |-..+|+ +...|...
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHH
Confidence 11122333333444444332110 11223334444566777788889999975 3223333 33334333
Q ss_pred CCCCcEEEEEceehhhhccc
Q 037310 113 TRASNKVVFTTLEFEIGGQM 132 (656)
Q Consensus 113 ~~~~~~iliTTR~~~~~~~~ 132 (656)
.+.|+.|+++|-+..+...+
T Consensus 184 nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hhcCcEEEEEeccHHHHHhc
Confidence 44889999999998876654
No 258
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.70 E-value=0.026 Score=62.89 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.|+|++|+|||++|+.++... ...| +.++.+. ... ... ..........+...-.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~---~~~-------~~~-------g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD---FVE-------MFV-------GVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH---hHH-------hhh-------cccHHHHHHHHHHHHh
Confidence 348899999999999999999876 2222 2222221 111 000 0011122222333334
Q ss_pred CccEEEEEeCCcCchh----------------hhhhccccCCCC-CCCcEEEEEceehhhhccc----C-CcceEeeccC
Q 037310 86 RKKFVLLLDDIWEPVD----------------LAQVGLLVPSAT-RASNKVVFTTLEFEIGGQM----E-AHKSFEVECL 143 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~-~~~~~iliTTR~~~~~~~~----~-~~~~~~l~~l 143 (656)
..+++|+||++|.... +.++...+.... ..+..+|.||......+.. + -...+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5678999999975410 111211122211 1334455566665533221 1 1345778888
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
+.++-.+++..+..........+ ...+++.+.|+
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 88888888888776543222222 34577777664
No 259
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.70 E-value=0.0055 Score=59.30 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCC------------------
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSR------------------ 66 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 66 (656)
-.++.|.|++|+|||++|.+++... ...-..++|+.....+ .++.+.+ ++++....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 3588999999999999999997764 1234578899886544 3333332 22221110
Q ss_pred CCCcccHHHHHHHHHHhhCC-ccEEEEEeCCc
Q 037310 67 SWNSKSLLEKAEDIFKVMKR-KKFVLLLDDIW 97 (656)
Q Consensus 67 ~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 97 (656)
.......++....+...... +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01112334555556555543 55689999984
No 260
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.69 E-value=0.0069 Score=61.27 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC---C-CCceEEEEEeCChhhHHHHHHHHHHHhCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP---N-DFDLVIWVVVSKDLQLKRIQDCIARKIGL 63 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (656)
.++-|+|++|+||||||.+++-.. ... . .-..++||+....+...++. .+++.++.
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~ 186 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGM 186 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 577899999999999999987543 211 1 22478999998887777764 45565544
No 261
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0047 Score=57.30 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.+.+|+|.|.+|.||||+|+.++..+ .... +.=++...... ..-.................-+.+-..+.+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 34799999999999999999999987 3232 11222111111 111111222222233333444666777777777
Q ss_pred hCCcc
Q 037310 84 MKRKK 88 (656)
Q Consensus 84 l~~~~ 88 (656)
..+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77776
No 262
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.016 Score=60.22 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.-.+++++|+.|+||||++..++.++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999888764
No 263
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.011 Score=53.94 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh--hHHHHHHHHHHHhCCCCCC--CC--------cccH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIARKIGLFSRS--WN--------SKSL 73 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~--~~--------~~~~ 73 (656)
.+++|.|+.|.|||||.+.++.-.+ ...+.+++...... ..... .+.++.-... .. ...-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4789999999999999999998761 22333443321110 11111 1111100000 00 0011
Q ss_pred HHHHHHHHHhhCCccEEEEEeCCcCch---hhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEee
Q 037310 74 LEKAEDIFKVMKRKKFVLLLDDIWEPV---DLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV 140 (656)
Q Consensus 74 ~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l 140 (656)
+...-.+.+.+-.++-++++|+.-+-- ..+.+...+.... .+..||++|.+...... ..+.+.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 112223555566777899999985332 2333333333333 34678888887766543 3344444
No 264
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.67 E-value=0.0092 Score=56.45 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHhhCCccEEEEEeCCcCc---hhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCCh
Q 037310 80 IFKVMKRKKFVLLLDDIWEP---VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLGY 145 (656)
Q Consensus 80 l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~~ 145 (656)
+.+.+-.++-++++|+.-+- .....+...+......+..||++|.+...... .+.+.++.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 44455567789999998433 22333333333221145678888888765543 56677766553
No 265
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.66 E-value=0.0074 Score=63.01 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.++.++|++|+||||.|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998875
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0026 Score=55.23 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....-|+|+|++|+||||++..+++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999877
No 267
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.65 E-value=0.005 Score=63.29 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 82 (656)
.++.|.|++|+|||||+.+++... ...-..++|++...... ++. .-++.++...... ...+.++..+.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs~~--qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEESPE--QIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcCHH--HHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 588999999999999999999876 22234688888754332 221 2233443322111 1123333333332
Q ss_pred hhCCccEEEEEeCCc
Q 037310 83 VMKRKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~ 97 (656)
..+.-++|+|.+.
T Consensus 156 --~~~~~lVVIDSIq 168 (372)
T cd01121 156 --ELKPDLVIIDSIQ 168 (372)
T ss_pred --hcCCcEEEEcchH
Confidence 3466789999984
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.013 Score=53.71 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=46.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCC-CCcccHHHHH-HHHHHh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRS-WNSKSLLEKA-EDIFKV 83 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~~~ 83 (656)
++.+.|++|+||||+++.++... . ..-..++.++.... +...+.....+...+.+... ....+..+.. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~-~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL-K--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-H--HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999876 2 22224555554432 12223333334433321111 1112333322 333333
Q ss_pred hCCccEEEEEeCCcC
Q 037310 84 MKRKKFVLLLDDIWE 98 (656)
Q Consensus 84 l~~~~~LlVlDdv~~ 98 (656)
..+..-++|+|-...
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 344444666888743
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.034 Score=59.67 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
=|.++|++|+|||-||-+++... ..-+|++..+ +++...+ ...++.+...+.+.-.-
T Consensus 703 giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~KyI-----------GaSEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLSKYI-----------GASEQNVRDLFERAQSA 759 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHHHHh-----------cccHHHHHHHHHHhhcc
Confidence 37789999999999999999876 1235666432 3332222 22344455556666677
Q ss_pred ccEEEEEeCCcCc---------h----hhhhhccccCCC-CCCCcEEEE-Eceehhhhccc---CCcceEeecc-CChhh
Q 037310 87 KKFVLLLDDIWEP---------V----DLAQVGLLVPSA-TRASNKVVF-TTLEFEIGGQM---EAHKSFEVEC-LGYDD 147 (656)
Q Consensus 87 ~~~LlVlDdv~~~---------~----~~~~~~~~l~~~-~~~~~~ili-TTR~~~~~~~~---~~~~~~~l~~-l~~~e 147 (656)
++++|.||.+|+. . ...++.-.+... +-.|.-|+- |||...+-... +.-.....-+ -++.|
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 9999999999764 1 122332222222 113444444 44443332111 2222233333 34556
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 148 SWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 148 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
-.++|.........+...+ .+.++.+.+|..
T Consensus 840 Rl~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 6777766554333222222 567777877765
No 270
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.0099 Score=57.74 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCC-ceEEEEEeC-ChhhHHHHHHHHHHHhCCC-------CCCCCcc-cHH-
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDF-DLVIWVVVS-KDLQLKRIQDCIARKIGLF-------SRSWNSK-SLL- 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~-~~~- 74 (656)
+.++|.|.+|+||||||..+++.. ...| +.++++-++ +.....++...+...-... ..+.... ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999987 3334 455566554 4456666666665432111 1111110 000
Q ss_pred -HHHHHHHHhh---CCccEEEEEeCC
Q 037310 75 -EKAEDIFKVM---KRKKFVLLLDDI 96 (656)
Q Consensus 75 -~~~~~l~~~l---~~~~~LlVlDdv 96 (656)
...-.+.+++ .++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1111233333 389999999999
No 271
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.62 E-value=0.0019 Score=61.36 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=26.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.....+|+|.|++|+||||||+.++...
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999999876
No 272
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0066 Score=61.01 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 82 (656)
.+|.|-|.+|||||||..+++.+. .... .++||+......-.++ -+..++...... ...+.+...+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~l---A~~~-~vLYVsGEES~~Qikl---RA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARL---AKRG-KVLYVSGEESLQQIKL---RADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcCHHHHHH---HHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 478899999999999999999998 2222 7899987665443333 334444333221 12233333333333
Q ss_pred hhCCccEEEEEeCCcC
Q 037310 83 VMKRKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~ 98 (656)
.++-++|+|.+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6788999999853
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.017 Score=62.67 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.+.++|++|.|||.||+++++.. ..+|-.+.+ . .+ .. ...........+.+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l----~s-------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----EL----LS-------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HH----hc-------cccchHHHHHHHHHHHH
Confidence 45678999999999999999999965 334432211 1 11 11 01112223333334444
Q ss_pred hCCccEEEEEeCCcCchh-------------hhhhccccCCCCC-CCcEEEEEceehhhhccc-----CCcceEeeccCC
Q 037310 84 MKRKKFVLLLDDIWEPVD-------------LAQVGLLVPSATR-ASNKVVFTTLEFEIGGQM-----EAHKSFEVECLG 144 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~-~~~~iliTTR~~~~~~~~-----~~~~~~~l~~l~ 144 (656)
....++.|.+|+++.... ..++...+..... .+..||-+|..+...+.. .-...+.++.-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 457899999999975311 2223333332221 222334444444433211 123467889999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCC
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGG 180 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 180 (656)
.++..+.|..+.......... +-....+++...|
T Consensus 412 ~~~r~~i~~~~~~~~~~~~~~--~~~~~~l~~~t~~ 445 (494)
T COG0464 412 LEERLEIFKIHLRDKKPPLAE--DVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHHhcccCCcchh--hhhHHHHHHHhcC
Confidence 999999999998754411111 1224556655555
No 274
>PRK14974 cell division protein FtsY; Provisional
Probab=96.61 E-value=0.014 Score=58.89 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCCC-CcccHHHH-HHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRSW-NSKSLLEK-AEDI 80 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~l 80 (656)
.+.+|+++|++|+||||.+.+++..+ .. .++ .+..+..... ....+-+...+..++.+.... ...+.... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999999998876 22 233 3444554322 222233455666665432211 11222222 2222
Q ss_pred HHhhCCccEEEEEeCCcC
Q 037310 81 FKVMKRKKFVLLLDDIWE 98 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~~ 98 (656)
...-....=++++|-...
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222233899999854
No 275
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.61 E-value=0.011 Score=60.12 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCC----CceEEEEEeCChhhHHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPND----FDLVIWVVVSKDLQLKRIQDCIARKI 61 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 61 (656)
-.++-|+|++|+|||++|.+++... ..... -..++||+....++..++. .+++.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 3578899999999999999998764 22111 1478999998877766654 333444
No 276
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.00087 Score=63.02 Aligned_cols=61 Identities=31% Similarity=0.328 Sum_probs=27.6
Q ss_pred hcCCcccEEEccCC--CCCccCccccCCcccCcEEeCCCCCCcccC--ccccCCCCCCeEecCCc
Q 037310 386 QFMASLRVLTLSDG--SLPGHLLTGISNLVSLQHLDPARSKIRRLP--MELKYLVHLKRLNLEFT 446 (656)
Q Consensus 386 ~~l~~L~~L~l~~~--~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~ 446 (656)
..|++|+.|.++.| .....++...-++++|++|++++|+++.+. ..+..+.+|..|++..|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 34555555555555 223333333333455555555555444211 11344444555555544
No 277
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.61 E-value=0.015 Score=62.33 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV 43 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 43 (656)
.+++.|+||+|+||||.++.++++. .|+.+-|.+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4689999999999999999999986 577777864
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.60 E-value=0.0022 Score=60.14 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=47.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHH-HHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLK-RIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+|.|+|++|.||||++..++... .......++.--. +.... .-...+..+- + ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~-~~E~~~~~~~~~i~q~-----~-vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIED-PIEFVHESKRSLINQR-----E-VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcC-CccccccCccceeeec-----c-cCCCccCHHHHHHHHh
Confidence 478999999999999999988776 2222333332211 11110 0000111100 0 0111122344566666
Q ss_pred CCccEEEEEeCCcCchhhhhh
Q 037310 85 KRKKFVLLLDDIWEPVDLAQV 105 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~~~~~ 105 (656)
...+=.+++|++.+.+..+.+
T Consensus 72 r~~pd~ii~gEird~e~~~~~ 92 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLA 92 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHH
Confidence 667779999999665554443
No 279
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.60 E-value=0.014 Score=54.62 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCc---eEEEEEeCChhhHHHHHHHHHHHh-CCCCCCCCcccHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFD---LVIWVVVSKDLQLKRIQDCIARKI-GLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~ 82 (656)
||+|.|++|+||||+|+.++... .. .... .+..++.............-...- ......+..-+.+...+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-NK-RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TT-CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-Cc-cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999999987 22 2222 244444443333222222111110 111122334466666666666
Q ss_pred hhCCccE
Q 037310 83 VMKRKKF 89 (656)
Q Consensus 83 ~l~~~~~ 89 (656)
.-.++..
T Consensus 79 L~~g~~i 85 (194)
T PF00485_consen 79 LKNGGSI 85 (194)
T ss_dssp HHTTSCE
T ss_pred HhCCCcc
Confidence 5555554
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.0081 Score=62.92 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCCC-CcccHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRSW-NSKSLLEKAEDIF 81 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 81 (656)
.+.+|.++|++|+||||.|..++..+ ... ++ .+..++.... +...+.+..++..++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 57899999999999999999999887 322 23 4445554332 223444556666665432211 1122222222222
Q ss_pred HhhCCccEEEEEeCC
Q 037310 82 KVMKRKKFVLLLDDI 96 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv 96 (656)
+.+.+. -++|+|-.
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 222333 46777776
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0025 Score=58.57 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV 43 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 43 (656)
.....+|.|.|++|+||||+|+.+++.. ...+..+.++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 3456799999999999999999999987 33444555553
No 282
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0056 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999874
No 283
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0035 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|.|.|++|+||||+|+.+++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999999987
No 284
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.57 E-value=0.014 Score=65.77 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCC--C-CCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTP--N-DFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~--~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-+.|+|++|+|||++|+.++.+..... . ..+..+|.. +.. .+.. . .....+.++..+.+.+.
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla---G---~~~~Ge~e~rl~~l~~~ 273 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA---G---TKYRGDFEKRFKALLKQ 273 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc---c---cchhhhHHHHHHHHHHH
Confidence 456899999999999999998641111 1 123444421 111 1110 0 00122334444444333
Q ss_pred h-CCccEEEEEeCCcCc----------hhhhhhccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccCCh
Q 037310 84 M-KRKKFVLLLDDIWEP----------VDLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECLGY 145 (656)
Q Consensus 84 l-~~~~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l~~ 145 (656)
+ .....+|++|+++.. .+...+..++... ..-++|-+|....+... ......+.+++.+.
T Consensus 274 l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~ 351 (758)
T PRK11034 274 LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 351 (758)
T ss_pred HHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCH
Confidence 3 345679999999743 1111122222221 23344445444332111 11235789999999
Q ss_pred hhhHHHHHHHhc
Q 037310 146 DDSWKLFEVKVG 157 (656)
Q Consensus 146 ~ea~~L~~~~~~ 157 (656)
+++.+++.....
T Consensus 352 ~~~~~IL~~~~~ 363 (758)
T PRK11034 352 EETVQIINGLKP 363 (758)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 285
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.57 E-value=0.01 Score=67.41 Aligned_cols=81 Identities=25% Similarity=0.195 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.++.++|++|+|||.||+.+++.. +...+.++++...... .+...++.+..-..........+.++ .
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~~~~l~~~~~---~ 551 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQGGLLTEAVR---K 551 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc----cHHHHhcCCCCCcccchhhHHHHHHH---h
Confidence 467899999999999999999976 2345566665433321 12222222211111111112222222 2
Q ss_pred CccEEEEEeCCcCc
Q 037310 86 RKKFVLLLDDIWEP 99 (656)
Q Consensus 86 ~~~~LlVlDdv~~~ 99 (656)
....+++||+++..
T Consensus 552 ~p~~VvllDEieka 565 (731)
T TIGR02639 552 HPHCVLLLDEIEKA 565 (731)
T ss_pred CCCeEEEEechhhc
Confidence 34569999999743
No 286
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0096 Score=63.00 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=84.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC---CCCCCcccHHHHHHHHHHhh
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF---SRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~~l~~~l 84 (656)
....|+-|+||||+|+-++.-. .+ .-+ ....+...-..++.|...-... -+.......++..+...+..
T Consensus 41 YlfsG~RGvGKTt~Ari~Akal-----NC--~~~-~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~ 112 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKAL-----NC--ENG-PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVN 112 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHh-----cC--CCC-CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhc
Confidence 4568999999999999998764 11 001 1111222222223332210000 00011222333332222222
Q ss_pred ----CCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceeh-hh-hcccCCcceEeeccCChhhhHHHHHHHh
Q 037310 85 ----KRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEF-EI-GGQMEAHKSFEVECLGYDDSWKLFEVKV 156 (656)
Q Consensus 85 ----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~-~~-~~~~~~~~~~~l~~l~~~ea~~L~~~~~ 156 (656)
.++--+.|+|+|+.. ..+..+..-+-.-. .....|..|++. .+ .......+.|.++.++.++....+...+
T Consensus 113 y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 113 YAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-SHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred cCCccccceEEEEecHHhhhHHHHHHHhcccccCc-cCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH
Confidence 345558999999643 33444433332222 334445555553 33 2333445689999999999999998888
Q ss_pred cCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 157 GRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
........ ++....|++..+|..
T Consensus 192 ~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 192 DKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred HhcCCccC---HHHHHHHHHHcCCCh
Confidence 76553322 334566777777743
No 287
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.55 E-value=0.0084 Score=60.36 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCC---C-CCceEEEEEeCChhhHHHHHHHHHHHhC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTP---N-DFDLVIWVVVSKDLQLKRIQDCIARKIG 62 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (656)
-.++.|+|++|+||||||..++... ... . .-..++|++....+...++ ..+++.++
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4688999999999999999988643 111 1 1235789998776665553 34444443
No 288
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.55 E-value=0.0042 Score=63.95 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|++|.||||||+.+.--+
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHccc
Confidence 378999999999999999997554
No 289
>PRK13695 putative NTPase; Provisional
Probab=96.53 E-value=0.0031 Score=57.82 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEE
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWV 42 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv 42 (656)
.|+|+|++|+|||||++.+++.. .. .++....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l-~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL-KE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEE
Confidence 47899999999999999998876 22 234444454
No 290
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.52 E-value=0.012 Score=68.03 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
..++.++|++|+|||++|+.++... ...-...+.++++..
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEY 634 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhh
Confidence 3568899999999999999999876 222233455555543
No 291
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.01 Score=60.70 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+.++|++|+||||+|..+++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999886
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.51 E-value=0.0018 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|+|.|++|+||||+|+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999873
No 293
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.50 E-value=0.02 Score=60.53 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGL 63 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 63 (656)
.+|++++|+.|+||||.+.+++..+ ....+...+..+..... ....+-+..+++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 4799999999999999999999876 22222234556665432 2333444555555543
No 294
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.002 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 295
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.50 E-value=0.066 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.725 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+..-+|+|.|+=|+|||++.+++.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999999999998887
No 296
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.49 E-value=0.027 Score=65.12 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCC--CCC-CceEE-EEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDT--PND-FDLVI-WVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~~-f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
.-+.++|++|+|||++|+.++++.... ... .+..+ .+.++ .+.. +. ......+.....+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~----------~l~a--~~----~~~g~~e~~l~~~l 258 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----------ALIA--GA----KYRGEFEERLKAVL 258 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------HHhh--cc----hhhhhHHHHHHHHH
Confidence 345689999999999999999876110 000 12222 23221 1110 00 01122333333333
Q ss_pred Hhh--CCccEEEEEeCCcCchh-------hhhhccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccCCh
Q 037310 82 KVM--KRKKFVLLLDDIWEPVD-------LAQVGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECLGY 145 (656)
Q Consensus 82 ~~l--~~~~~LlVlDdv~~~~~-------~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l~~ 145 (656)
+.+ .+++.+|++|+++.... .+......+...+..-++|-+|....+... ......+.++..+.
T Consensus 259 ~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~ 338 (852)
T TIGR03346 259 NEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTV 338 (852)
T ss_pred HHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCH
Confidence 333 24689999999974421 111111112222133445555554433111 12234678999999
Q ss_pred hhhHHHHHHHhcC
Q 037310 146 DDSWKLFEVKVGR 158 (656)
Q Consensus 146 ~ea~~L~~~~~~~ 158 (656)
++..+++......
T Consensus 339 ~~~~~iL~~~~~~ 351 (852)
T TIGR03346 339 EDTISILRGLKER 351 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766433
No 297
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.47 E-value=0.016 Score=54.52 Aligned_cols=84 Identities=25% Similarity=0.411 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHHhCC-------CCCCCCcc------
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARKIGL-------FSRSWNSK------ 71 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~~------ 71 (656)
..++|.|.+|+|||+|+.++++.. .-+.++++-++ +.....++.+.+...-.. ...+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 468899999999999999999986 34555777776 456677777777543111 11111110
Q ss_pred -cHHHHHHHHHHhhCCccEEEEEeCC
Q 037310 72 -SLLEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 72 -~~~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
..-...+.++. +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 00111222333 799999999999
No 298
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.46 E-value=0.0019 Score=58.71 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCC-CCCceEEEEEeCChhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTP-NDFDLVIWVVVSKDLQ 49 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 49 (656)
..++.+.|+.|+|||.+|+.+++.. . +.....+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4688999999999999999999988 3 4455677777766555
No 299
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.45 E-value=0.012 Score=66.51 Aligned_cols=186 Identities=16% Similarity=0.195 Sum_probs=85.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc--cCC-----------CCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF--FDT-----------PNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWN 69 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~--~~~-----------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 69 (656)
.+.++++|+|+.|.||||+.+.+.... +.. -.+|+.++ ...+..-++.+-...+..
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~-~~i~~~~si~~~LStfS~---------- 388 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF-ADIGDEQSIEQNLSTFSG---------- 388 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee-eecChHhHHhhhhhHHHH----------
Confidence 345799999999999999998886541 000 11222221 112211111111111110
Q ss_pred cccHHHHHHHHHHhhCCccEEEEEeCCcCchh---hhhhc-cccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCCh
Q 037310 70 SKSLLEKAEDIFKVMKRKKFVLLLDDIWEPVD---LAQVG-LLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLGY 145 (656)
Q Consensus 70 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~-~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~~ 145 (656)
...+... +...+ ..+-|+++|++-.-.+ ...+. ..+......++.+|+||-...+.........+.-..+..
T Consensus 389 --~m~~~~~-il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~ 464 (771)
T TIGR01069 389 --HMKNISA-ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLF 464 (771)
T ss_pred --HHHHHHH-HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEE
Confidence 1111222 22222 4789999999864322 22221 111111115678999999877643322111111111111
Q ss_pred h-hhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcC
Q 037310 146 D-DSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSS 211 (656)
Q Consensus 146 ~-ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~ 211 (656)
+ +... +.-++.. + .+. ...|-.|++.+ |+|-.+.--|..+.+ ....++...++.+...
T Consensus 465 d~~~l~-p~Ykl~~-G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 465 DEETLS-PTYKLLK-G-IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred cCCCCc-eEEEECC-C-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 1 1100 1001100 1 111 23477788877 577777766666544 3344566555555553
No 300
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.45 E-value=0.0097 Score=68.24 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++.++|++|+|||.+|+.+++..
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999998876
No 301
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.43 E-value=0.013 Score=67.52 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.++.++|++|+|||++|+.+++..+ ..-...+.++++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~---~~~~~~i~id~se 636 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSE 636 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh---cCCCcEEEEEhHH
Confidence 4788999999999999999998762 1122345555543
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.014 Score=60.15 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCC--CCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTP--NDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
..++|.++|++|+||||.+..++..+ ... .+-..+..++..... ....-++..++.++.+.. .....++....+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~-~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY-GINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 46799999999999999999999876 221 122356667665432 222335666666655322 122334444444
Q ss_pred HHhhCCccEEEEEeCCc
Q 037310 81 FKVMKRKKFVLLLDDIW 97 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv~ 97 (656)
.+. .+.-++++|.+.
T Consensus 250 ~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 250 TQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHh--CCCCEEEEcCCC
Confidence 433 445689999985
No 303
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.42 E-value=0.014 Score=59.18 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCC---C-CCceEEEEEeCChhhHHHHHHHHHHHhCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTP---N-DFDLVIWVVVSKDLQLKRIQDCIARKIGL 63 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (656)
-.++-|+|++|+|||++|..++-.. ... . .-..++||+....+...++. .+++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3578899999999999999888543 211 1 12368999998887777663 55665543
No 304
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.005 Score=55.39 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh--HHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ--LKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.+++|.|+.|.|||||++.++... ......+++....... ..+.. ..+..-.+ ...-+...-.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q---lS~G~~~r~~l~~~ 94 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQ---LSGGQRQRVALARA 94 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHH----hceEEEee---CCHHHHHHHHHHHH
Confidence 589999999999999999999876 2334555554321111 11111 11111000 11112222335555
Q ss_pred hCCccEEEEEeCCcCchh---hhhhccccCCCCCCCcEEEEEceehhhhcc
Q 037310 84 MKRKKFVLLLDDIWEPVD---LAQVGLLVPSATRASNKVVFTTLEFEIGGQ 131 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTTR~~~~~~~ 131 (656)
+...+-++++|+....-| ...+...+......+..++++|-+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 666778899999854322 223333332221134567777777665544
No 305
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00019 Score=67.56 Aligned_cols=102 Identities=23% Similarity=0.205 Sum_probs=65.4
Q ss_pred CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc--cccCCCCCC
Q 037310 362 SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM--ELKYLVHLK 439 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~--~~~~l~~L~ 439 (656)
+.+.+++.|+++||.++++.- ..+|+.|++|.|+-|++.+.- .+....+|+.|.|+.|.|..+-+ -+.++++|+
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 346677778888887777653 467888888888888444332 36677778888887777765533 366777777
Q ss_pred eEecCCccc--cc---cChhhhcCCCCCcEEEe
Q 037310 440 RLNLEFTRL--TR---IPQEVISNLKMLRVLRM 467 (656)
Q Consensus 440 ~L~l~~~~~--~~---l~~~~l~~l~~L~~L~l 467 (656)
.|.|..|.. +. .....+.-|++|+.|+-
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 777766622 11 11222455677776663
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.41 E-value=0.012 Score=56.54 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.++.|.|++|+||||+|.+++... . +.. ..++|++...
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~e~ 62 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVSTQL 62 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeCCC
Confidence 489999999999999998877655 1 122 3466777543
No 307
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.41 E-value=0.025 Score=50.62 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
+-..++-+|+|..|+|||||...++-.
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhh
Confidence 345788999999999999998888643
No 308
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.41 E-value=0.014 Score=54.63 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCC-------ceEEEEEeCChh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDF-------DLVIWVVVSKDL 48 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~~~ 48 (656)
.++.|.|++|+||||++..++.........+ ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 3788999999999999999988762211111 368899887664
No 309
>PRK08233 hypothetical protein; Provisional
Probab=96.40 E-value=0.0028 Score=58.62 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|+||||+|..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999999876
No 310
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.019 Score=61.65 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
=++++++||+|||||.+|+.++.-. .+++| -++++.-.+..++. ...++-...=+...++.+.+.
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~AL--nRkFf----RfSvGG~tDvAeIk--------GHRRTYVGAMPGkiIq~LK~v- 502 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARAL--NRKFF----RFSVGGMTDVAEIK--------GHRRTYVGAMPGKIIQCLKKV- 502 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHh--CCceE----EEeccccccHHhhc--------ccceeeeccCChHHHHHHHhh-
Confidence 4689999999999999999999876 22233 33454444444432 111111111122333333333
Q ss_pred CCccEEEEEeCCcCchh------------------hhh-hccccCCCCCCCcEE-EEEceehh-h--hcccCCcceEeec
Q 037310 85 KRKKFVLLLDDIWEPVD------------------LAQ-VGLLVPSATRASNKV-VFTTLEFE-I--GGQMEAHKSFEVE 141 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~------------------~~~-~~~~l~~~~~~~~~i-liTTR~~~-~--~~~~~~~~~~~l~ 141 (656)
+..--|+.||.||..-. -.. ...++.--. -=|+| .|+|-+.. . .......+.++|.
T Consensus 503 ~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFicTAN~idtIP~pLlDRMEvIels 581 (906)
T KOG2004|consen 503 KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFICTANVIDTIPPPLLDRMEVIELS 581 (906)
T ss_pred CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEEeccccccCChhhhhhhheeecc
Confidence 33455788899874310 000 111111111 11343 34444421 0 1111223578999
Q ss_pred cCChhhhHHHHHHHh
Q 037310 142 CLGYDDSWKLFEVKV 156 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~ 156 (656)
+-..+|-+++-+++.
T Consensus 582 GYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 582 GYVAEEKVKIAERYL 596 (906)
T ss_pred CccHHHHHHHHHHhh
Confidence 999999888887775
No 311
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.021 Score=56.58 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDF 36 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f 36 (656)
.+-|.++||+|.|||-+|++++.+. ...|
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 4567889999999999999999987 5555
No 312
>PRK15453 phosphoribulokinase; Provisional
Probab=96.37 E-value=0.017 Score=56.04 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=46.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh--hHHHHHHHHHH--HhCCCCCC--CCcccHH
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIAR--KIGLFSRS--WNSKSLL 74 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~--~l~~~~~~--~~~~~~~ 74 (656)
|.....+|+|.|.+|+||||+|+.+++.+ . ..-.....++..... +..++...+.. .-+...+. ...-+.+
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~if-~--~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~d 77 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIF-R--RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFD 77 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH-h--hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHH
Confidence 45667899999999999999999999766 1 111124455544333 33233222221 11211122 3444666
Q ss_pred HHHHHHHHhhC
Q 037310 75 EKAEDIFKVMK 85 (656)
Q Consensus 75 ~~~~~l~~~l~ 85 (656)
...+.++...+
T Consensus 78 lL~~~l~~l~~ 88 (290)
T PRK15453 78 ELEQLFREYGE 88 (290)
T ss_pred HHHHHHHHHhc
Confidence 66666666544
No 313
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.36 E-value=0.012 Score=67.78 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccC--CCCCC-ceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFD--TPNDF-DLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~--~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-+.++|++|+|||++|+.++.+... +.... +..+|. + +.. .+. .. .....+.++..+.+.+.
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~----~l~---ag---~~~~ge~e~rl~~i~~~ 266 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIG----LLL---AG---TKYRGEFEERLKRIFDE 266 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHH----HHh---cc---CCCccHHHHHHHHHHHH
Confidence 4579999999999999999988611 11111 234442 1 111 111 11 01122344444444443
Q ss_pred h-CCccEEEEEeCCcCch---------hhhhhccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccCChh
Q 037310 84 M-KRKKFVLLLDDIWEPV---------DLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECLGYD 146 (656)
Q Consensus 84 l-~~~~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l~~~ 146 (656)
+ ..++.+|++|+++... +...+.. |...++.-++|-+|........ ......+.++..+.+
T Consensus 267 ~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk--p~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~ 344 (821)
T CHL00095 267 IQENNNIILVIDEVHTLIGAGAAEGAIDAANILK--PALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVE 344 (821)
T ss_pred HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH--HHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHH
Confidence 3 3568999999996331 1111211 1112133455556655443211 122346788888888
Q ss_pred hhHHHHHHH
Q 037310 147 DSWKLFEVK 155 (656)
Q Consensus 147 ea~~L~~~~ 155 (656)
+..+++...
T Consensus 345 e~~aILr~l 353 (821)
T CHL00095 345 ETIEILFGL 353 (821)
T ss_pred HHHHHHHHH
Confidence 888887654
No 314
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.36 E-value=0.017 Score=58.44 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCC----CCceEEEEEeCChhhHHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPN----DFDLVIWVVVSKDLQLKRIQDCIARKI 61 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 61 (656)
-.++-|+|++|+||||+|.+++... .... .-..++||+....++..++. .+++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 4688899999999999999998765 2211 11378999988877666654 334443
No 315
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0019 Score=60.86 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=56.0
Q ss_pred HhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC--CCc-ccCccccCCCCCCeEecCCcccc---ccChhhhcC
Q 037310 385 FQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS--KIR-RLPMELKYLVHLKRLNLEFTRLT---RIPQEVISN 458 (656)
Q Consensus 385 ~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~~---~l~~~~l~~ 458 (656)
...+..|+.|++.++..++ + ..+-.|++|++|.++.| .+. .++.-..++++|++|++++|++. ++++ +..
T Consensus 39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKE 114 (260)
T ss_pred cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhh
Confidence 3455667777766663222 2 13446788888888888 333 45555667788888888888544 4555 667
Q ss_pred CCCCcEEEeeecCC
Q 037310 459 LKMLRVLRMYECGS 472 (656)
Q Consensus 459 l~~L~~L~l~~~~~ 472 (656)
+.+|..|++..|..
T Consensus 115 l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 115 LENLKSLDLFNCSV 128 (260)
T ss_pred hcchhhhhcccCCc
Confidence 77888888888873
No 316
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.049 Score=59.91 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.|+||+|+|||-||++++-+. .+-|++++. ..+ .+.+...+ ....+.+....
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSG-SEF-------vE~~~g~~--------asrvr~lf~~a 399 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSG-SEF-------VEMFVGVG--------ASRVRDLFPLA 399 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhccc--------CCceeeech-HHH-------HHHhcccc--------hHHHHHHHHHh
Confidence 4457899999999999999999987 234555532 122 22121111 11222233322
Q ss_pred -CCccEEEEEeCCcCc-----------------hhhhhhccccCCCCCCCcEEEE-Eceehhhhccc----C-CcceEee
Q 037310 85 -KRKKFVLLLDDIWEP-----------------VDLAQVGLLVPSATRASNKVVF-TTLEFEIGGQM----E-AHKSFEV 140 (656)
Q Consensus 85 -~~~~~LlVlDdv~~~-----------------~~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~~----~-~~~~~~l 140 (656)
.+.++++.+|+++.. .-+.++...+......+..|++ +|....+.+.. + -.+.+.+
T Consensus 400 r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i 479 (774)
T KOG0731|consen 400 RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQI 479 (774)
T ss_pred hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceec
Confidence 356789999998643 1133333333333312233444 45555443321 1 1345778
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
+.-+.....++|.-++...... .+..++.+ ++....|.+=|
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 8888889999999998766532 33445556 88888887744
No 317
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.32 E-value=0.0057 Score=60.31 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
+|+.++.|.+.|.+|.|||.||.++.-.
T Consensus 241 ld~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 241 LDDDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred cCCCCCeEEeeccCCccHhHHHHHHHHH
Confidence 5788999999999999999998776544
No 318
>PRK06762 hypothetical protein; Provisional
Probab=96.31 E-value=0.0033 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.+|.|+|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 319
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.026 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+-|.++||+|.|||-||++|+.+-
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh
Confidence 457899999999999999999986
No 320
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.30 E-value=0.017 Score=66.46 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.++|++|+|||+||+.+++..
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999999876
No 321
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.29 E-value=0.028 Score=54.53 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCC---------CCceEEEEEeCChh-hHHHHHHHHHHHh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPN---------DFDLVIWVVVSKDL-QLKRIQDCIARKI 61 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~---------~f~~~~wv~~~~~~-~~~~~~~~i~~~l 61 (656)
+-.|+|++|+|||+||..++........ .-..+++++...+. .+.+-...+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999875411111 11246777776544 3444445555544
No 322
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.15 Score=52.36 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=78.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCCc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKRK 87 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 87 (656)
..++||+|.|||++..++|+.. .||.- =+......+-.+ ++.++.. ...
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d-Lr~LL~~------------------------t~~ 286 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD-LRHLLLA------------------------TPN 286 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH-HHHHHHh------------------------CCC
Confidence 4689999999999999999976 45432 111111111111 1122111 246
Q ss_pred cEEEEEeCCcCchh--------------------hhhhccc----cCCCCCCCcEEEE-Eceehhhhccc----CC-cce
Q 037310 88 KFVLLLDDIWEPVD--------------------LAQVGLL----VPSATRASNKVVF-TTLEFEIGGQM----EA-HKS 137 (656)
Q Consensus 88 ~~LlVlDdv~~~~~--------------------~~~~~~~----l~~~~~~~~~ili-TTR~~~~~~~~----~~-~~~ 137 (656)
+-+||+.|+|..-+ +.-+.++ +..+ .+-|||| ||....-.+.. +. .--
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc--g~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC--GDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC--CCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 67788888874311 0012222 2222 2345555 55544322111 11 223
Q ss_pred EeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHH-HHcC
Q 037310 138 FEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGR-AMAS 194 (656)
Q Consensus 138 ~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~-~l~~ 194 (656)
+.+.-.+.+.-..|+....+... +.. .+.+|.+...|.-+.=+.+++ .|..
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~---~h~---L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE---DHR---LFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC---Ccc---hhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 67888888888888888876532 222 256666666666444444444 4444
No 323
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.28 E-value=0.027 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999875
No 324
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.042 Score=57.76 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh-HHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ-LKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-++++++|++|+||||++..++..+ .....-..+..++...... ..+-+...++.++.+... .....+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~--~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV--VYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc--cCCHHhHHHHHHH-
Confidence 4689999999999999999998876 2012234567777655322 223344445545443221 1223333334433
Q ss_pred hCCccEEEEEeCC
Q 037310 84 MKRKKFVLLLDDI 96 (656)
Q Consensus 84 l~~~~~LlVlDdv 96 (656)
+. ..=++|+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3567889976
No 325
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.28 E-value=0.008 Score=53.62 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEcCCCCcHHHHHHHHhhcc
Q 037310 10 LYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 10 i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999987
No 326
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.27 E-value=0.035 Score=63.94 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=67.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCC---CC-c-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPN---DF-D-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
-+.++|++|+|||++|+.++.+. .... .. + .++++.++. +.... ......++..+.+.
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i-~~~~vp~~l~~~~~~~l~l~~----------l~ag~------~~~g~~e~~lk~~~ 263 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRI-INGEVPEGLKGRRVLALDMGA----------LVAGA------KYRGEFEERLKGVL 263 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHh-hcCCCchhhCCCEEEEEehhh----------hhhcc------chhhhhHHHHHHHH
Confidence 56789999999999999999986 1110 01 1 233333321 10000 01122233333333
Q ss_pred Hhh--CCccEEEEEeCCcCch---------hhhhhccccCCCCCCCcEEEEEceehhhhcc-------cCCcceEeeccC
Q 037310 82 KVM--KRKKFVLLLDDIWEPV---------DLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-------MEAHKSFEVECL 143 (656)
Q Consensus 82 ~~l--~~~~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-------~~~~~~~~l~~l 143 (656)
..+ .+++.+|++|+++... +...+. .|...++.-++|-+|........ ......+.+..-
T Consensus 264 ~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l--kp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP 341 (857)
T PRK10865 264 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML--KPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 341 (857)
T ss_pred HHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHh--cchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCC
Confidence 222 3578999999996542 111222 22222233455555555443111 112235667777
Q ss_pred ChhhhHHHHHHHh
Q 037310 144 GYDDSWKLFEVKV 156 (656)
Q Consensus 144 ~~~ea~~L~~~~~ 156 (656)
+.++..+++....
T Consensus 342 ~~~~~~~iL~~l~ 354 (857)
T PRK10865 342 SVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHHHHHHh
Confidence 8888888886554
No 327
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.08 Score=49.43 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=69.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
.+++=|.++|++|.|||-||++|++.- ...|+.++.. ++.+..+.+- ....+.+.-
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs----elvqk~igeg------------srmvrelfv 234 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS----ELVQKYIGEG------------SRMVRELFV 234 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----HHHHHHhhhh------------HHHHHHHHH
Confidence 356778899999999999999999864 2334555432 2222221110 001111111
Q ss_pred h-hCCccEEEEEeCCcCchh-----------------hhhhccccCC-CCCCCcEEEEEceehhhhccc-----CCcceE
Q 037310 83 V-MKRKKFVLLLDDIWEPVD-----------------LAQVGLLVPS-ATRASNKVVFTTLEFEIGGQM-----EAHKSF 138 (656)
Q Consensus 83 ~-l~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~-~~~~~~~iliTTR~~~~~~~~-----~~~~~~ 138 (656)
. -..-+.+|.+|.+++... ++ +..-+.. .....-+||..|..-.+.+.. ...+.+
T Consensus 235 marehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 235 MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 1 134577888898875411 11 1111111 112445677766665543321 123457
Q ss_pred eeccCChhhhHHHHHHHhcC
Q 037310 139 EVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 139 ~l~~l~~~ea~~L~~~~~~~ 158 (656)
+.++-+++.-.++++-+.-+
T Consensus 314 efp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 314 EFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred cCCCCCHHHHHHHHHHhhhh
Confidence 77777777767777655433
No 328
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.25 E-value=0.012 Score=58.72 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
+++-|+|+.|+||||||..++... +. .-...+||......+. ..++.++..... ..+...++..+...+
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~~-q~--~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAEA-QK--QGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HH--TT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHhh-hc--ccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 589999999999999999998876 22 2345789998776655 333444433221 123445666666666
Q ss_pred hhC-CccEEEEEeCCcC
Q 037310 83 VMK-RKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~~ 98 (656)
.++ +..-++|+|.|-.
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 654 4445889999843
No 329
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.25 E-value=0.0034 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 330
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.25 E-value=0.03 Score=55.54 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
.++.|.|++|+||||+|.+++... . ..+-..++|+++...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~-~-~~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDL-I-TQHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH-H-HhcCceEEEEEcccC
Confidence 478899999999999999998875 1 222346889887653
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.02 Score=58.01 Aligned_cols=90 Identities=20% Similarity=0.112 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh-HHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ-LKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
+.++++|+|+.|+||||++..++... ... -..+.+++...... ..+-.+..++.++.+... ..+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~--~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIV--ATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEe--cCCHHHHHHHHHH
Confidence 46799999999999999999998766 222 23577787765432 233445556555543221 2234444443333
Q ss_pred hh-CCccEEEEEeCCcC
Q 037310 83 VM-KRKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv~~ 98 (656)
.- .+..=++++|-...
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 21 13456788898743
No 332
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0073 Score=51.58 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|.+|+||||+|.+++... ..-|++++....-..+....-++. ....-+.+.+...+...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~y-----~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEEY-----KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhcccccc-----cCccccHHHHHHHHHHHH
Confidence 3468899999999999999999754 234777765544444433322211 122335566666666655
Q ss_pred CC
Q 037310 85 KR 86 (656)
Q Consensus 85 ~~ 86 (656)
.+
T Consensus 74 ~~ 75 (176)
T KOG3347|consen 74 IE 75 (176)
T ss_pred hc
Confidence 44
No 333
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.026 Score=55.16 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHH-hCCCCCCCCcccHHHHH---HHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARK-IGLFSRSWNSKSLLEKA---EDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~---~~l~ 81 (656)
+++-|+|+.|.||||+|.+++-.. ...-..++|++.....+...+. .++.. +.. ---..+.+.++.. ..+.
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~-l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAK-QLGVDLLDN-LLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcc-eeEecCCCHHHHHHHHHHHH
Confidence 578899999999999999987765 2333378999988877776653 33333 211 1111233333333 3333
Q ss_pred HhhCCccEEEEEeCC
Q 037310 82 KVMKRKKFVLLLDDI 96 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv 96 (656)
+....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333344679999998
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.24 E-value=0.019 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 335
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.23 E-value=0.028 Score=56.59 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh--hHHHHHHHHHHHhCCCCCC-CCcccH-HHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIARKIGLFSRS-WNSKSL-LEKAED 79 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~-~~~~~~ 79 (656)
...+++++|++|+||||++..++... ... . ..+..+...... ...++ .......+.+... ....+. ....+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l-~~~-g-~~V~Li~~D~~r~~a~eql-~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY-KAQ-G-KKVLLAAGDTFRAAAIEQL-QVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-Hhc-C-CeEEEEecCccchhhHHHH-HHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 56899999999999999999999887 222 2 245555543221 11222 2333333322110 011122 222333
Q ss_pred HHHhhCCccEEEEEeCCcC
Q 037310 80 IFKVMKRKKFVLLLDDIWE 98 (656)
Q Consensus 80 l~~~l~~~~~LlVlDdv~~ 98 (656)
+.....++.=++|+|-.-.
T Consensus 189 l~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 189 IQAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHHhCCCCEEEEeCCCC
Confidence 4444444555888898743
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.22 E-value=0.0039 Score=58.04 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999865
No 337
>PRK14527 adenylate kinase; Provisional
Probab=96.20 E-value=0.0077 Score=56.17 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|.|+|++|+||||+|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 338
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0043 Score=56.73 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|-||-|+||||||+.++++.
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHh
Confidence 35789999999999999999999998
No 339
>PRK06547 hypothetical protein; Provisional
Probab=96.19 E-value=0.0048 Score=56.09 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+...+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998865
No 340
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.19 E-value=0.025 Score=64.23 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..++.++|++|+||||+|+.++... ...|-. +.++...+..++...- ............+.+...
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~~--------~~~~g~~~G~~~~~l~~~- 413 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGHR--------RTYIGSMPGKLIQKMAKV- 413 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccch--------hccCCCCCcHHHHHHHhc-
Confidence 4579999999999999999999876 222322 3333333332221111 000111112223333332
Q ss_pred CCccEEEEEeCCcCchh------hhhhccccCCC-------------CCCCcEEEEEceehh-hhc-ccCCcceEeeccC
Q 037310 85 KRKKFVLLLDDIWEPVD------LAQVGLLVPSA-------------TRASNKVVFTTLEFE-IGG-QMEAHKSFEVECL 143 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~------~~~~~~~l~~~-------------~~~~~~iliTTR~~~-~~~-~~~~~~~~~l~~l 143 (656)
.....+++||+++.... .+.+...+... ..-+..++|+|-+.. +-. .......+++.++
T Consensus 414 ~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~ 493 (784)
T PRK10787 414 GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGY 493 (784)
T ss_pred CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCC
Confidence 22344789999975421 12222221110 001233444444422 100 0122346889999
Q ss_pred ChhhhHHHHHHHh
Q 037310 144 GYDDSWKLFEVKV 156 (656)
Q Consensus 144 ~~~ea~~L~~~~~ 156 (656)
+.+|-.++..++.
T Consensus 494 t~eek~~Ia~~~L 506 (784)
T PRK10787 494 TEDEKLNIAKRHL 506 (784)
T ss_pred CHHHHHHHHHHhh
Confidence 9999888887766
No 341
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.031 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998765
No 342
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0087 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 343
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.18 E-value=0.011 Score=62.58 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
.++.|.|++|+|||||+.+++... . ..-..++|++.....
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~-a--~~g~~vlYvs~Ees~ 120 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARL-A--AAGGKVLYVSGEESA 120 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEccccH
Confidence 488999999999999999999876 2 222367888875543
No 344
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.031 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998765
No 345
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.17 E-value=0.019 Score=55.52 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
-.++.|.|++|+|||++|.+++... ...-..++|++....
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEH 60 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCC
Confidence 3588999999999999999988765 123456888887653
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.17 E-value=0.0032 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.|+|++|+|||++|..++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988876
No 347
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.022 Score=54.39 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 037310 6 GILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
.+++|+||.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 348
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.16 E-value=0.021 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
+|+|.|++|+||||+|+.++... .....-..+..++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l-~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL-SRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH-hhcCCCCcEEEEecCcc
Confidence 58999999999999999999876 21111123455665444
No 349
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.15 E-value=0.025 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999886
No 350
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.14 E-value=0.022 Score=51.27 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEE--EEEeCChhhHHHHHHHHHHHhCCCCC--CCCcc-------c
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVI--WVVVSKDLQLKRIQDCIARKIGLFSR--SWNSK-------S 72 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~-------~ 72 (656)
...+|-|++..|.||||.|..++.+. ....+.+.+ |+.......-......+.-.+...+. .+... .
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRA--LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 44688899999999999999998886 233343321 33333222222222222000000000 01111 1
Q ss_pred HHHHHHHHHHhhCC-ccEEEEEeCCcC-----chhhhhhccccCCCCCCCcEEEEEceehh
Q 037310 73 LLEKAEDIFKVMKR-KKFVLLLDDIWE-----PVDLAQVGLLVPSATRASNKVVFTTLEFE 127 (656)
Q Consensus 73 ~~~~~~~l~~~l~~-~~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~iliTTR~~~ 127 (656)
..+..+...+.+.. .-=++|||.+-. .-+.+.+...+.... .+..+|+|-|...
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp-~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERP-GHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence 11222333344444 445999999832 233444555454433 7778999999864
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.14 E-value=0.023 Score=59.08 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|.++|++|+||||.|.+++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998766
No 352
>PRK04328 hypothetical protein; Provisional
Probab=96.14 E-value=0.018 Score=56.10 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
-.++.|.|++|+|||+||.+++.+. .+.-..++|++....+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCH
Confidence 3588899999999999999988764 2234567888876544
No 353
>PTZ00301 uridine kinase; Provisional
Probab=96.13 E-value=0.0046 Score=58.18 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|.||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999887764
No 354
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.13 E-value=0.046 Score=51.44 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCccEEEEEeCCcC---chhhhhhccccCCCC-CCCcEEEEEceehhhhcccCCcceEeec
Q 037310 74 LEKAEDIFKVMKRKKFVLLLDDIWE---PVDLAQVGLLVPSAT-RASNKVVFTTLEFEIGGQMEAHKSFEVE 141 (656)
Q Consensus 74 ~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~~~~l~~~~-~~~~~iliTTR~~~~~~~~~~~~~~~l~ 141 (656)
++..-.+.+.+-..+-+|+.|+.=. ...-+.+...+.... ..|..||+.|-++.++..+. +.+.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d--r~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD--RVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC--EEEEEe
Confidence 3344457777888888999998621 122222333333221 15778999999999988643 444443
No 355
>PRK06696 uridine kinase; Validated
Probab=96.13 E-value=0.005 Score=58.97 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++.+|+|.|.+|+||||+|+.++...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999886
No 356
>PHA00729 NTP-binding motif containing protein
Probab=96.11 E-value=0.0051 Score=57.78 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+...|.|+|++|+||||||..++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999875
No 357
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.078 Score=50.96 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
-+-|.++|++|.||+-||++|+.+. . ..|++++.. ++ +.++++. .+...+.+....
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA-n-------STFFSvSSS----DL---vSKWmGE---------SEkLVknLFemA 221 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA-N-------STFFSVSSS----DL---VSKWMGE---------SEKLVKNLFEMA 221 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc-C-------CceEEeehH----HH---HHHHhcc---------HHHHHHHHHHHH
Confidence 3568899999999999999999986 1 334455431 11 1222221 122333333333
Q ss_pred -CCccEEEEEeCCcCc------hh---hhhhc-----c--ccCCCCCCCcEEEEEceehhhhccc---CCcceEeeccCC
Q 037310 85 -KRKKFVLLLDDIWEP------VD---LAQVG-----L--LVPSATRASNKVVFTTLEFEIGGQM---EAHKSFEVECLG 144 (656)
Q Consensus 85 -~~~~~LlVlDdv~~~------~~---~~~~~-----~--~l~~~~~~~~~iliTTR~~~~~~~~---~~~~~~~l~~l~ 144 (656)
++++.+|.+|.++.. .+ ...+. . -..+.. .|.-|+=.|.-+-+++.. .-...+-++--+
T Consensus 222 Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~-~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN-DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE 300 (439)
T ss_pred HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC-CceEEEecCCCchhHHHHHHHHhhcceeccCCc
Confidence 578899999999743 11 11111 1 122222 343344455444333221 111223333333
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
...-..+|+-+++... ..-.++..+.+.++..|+.
T Consensus 301 ~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 301 AHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred HHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 3334456776676544 1222344677888887764
No 358
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.11 E-value=0.15 Score=54.93 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=88.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccc-----CCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFF-----DTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED 79 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~-----~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 79 (656)
-..+-|.|-+|+|||+.+..|.+... .....|+. +.|+...-....++...|..++.. ....+......
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~~I~~~lsg-----~~~~~~~al~~ 495 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYEKIWEALSG-----ERVTWDAALEA 495 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHHHHHHhccc-----CcccHHHHHHH
Confidence 34789999999999999999988541 11233433 356666667789999999998865 34445566666
Q ss_pred HHHhhC-----CccEEEEEeCCcCc----hh-hhhhccccCCCCCCCcEEEEEceehh-----------hhcccCCcceE
Q 037310 80 IFKVMK-----RKKFVLLLDDIWEP----VD-LAQVGLLVPSATRASNKVVFTTLEFE-----------IGGQMEAHKSF 138 (656)
Q Consensus 80 l~~~l~-----~~~~LlVlDdv~~~----~~-~~~~~~~l~~~~~~~~~iliTTR~~~-----------~~~~~~~~~~~ 138 (656)
+..++. .+..++++|++|.. ++ +..+.. +|.. ++++++|.+=-.. +..++ ....+
T Consensus 496 L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-Wpt~--~~sKLvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi 571 (767)
T KOG1514|consen 496 LNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-WPTL--KNSKLVVIAIANTMDLPERLLMNRVSSRL-GLTRI 571 (767)
T ss_pred HHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-CCcC--CCCceEEEEecccccCHHHHhccchhhhc-cceee
Confidence 666653 46789999999754 11 222222 4444 5666554432211 11111 12346
Q ss_pred eeccCChhhhHHHHHHHhcC
Q 037310 139 EVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 139 ~l~~l~~~ea~~L~~~~~~~ 158 (656)
...+-+.++-.++...+..+
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcc
Confidence 67777777777776666544
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.02 Score=60.56 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-++|+|+|++|+||||++.+++..+ ........+..++..... ...+.+....+.++..... ..+..+....+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~--a~d~~~L~~aL~~- 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE--ADSAESLLDLLER- 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeEe--cCcHHHHHHHHHH-
Confidence 4789999999999999999998876 222223445566553322 1222233333333322211 1222333333333
Q ss_pred hCCccEEEEEeCCc
Q 037310 84 MKRKKFVLLLDDIW 97 (656)
Q Consensus 84 l~~~~~LlVlDdv~ 97 (656)
+. +.-+||+|...
T Consensus 426 l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 LR-DYKLVLIDTAG 438 (559)
T ss_pred hc-cCCEEEecCCC
Confidence 33 35588899874
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.11 E-value=0.038 Score=54.13 Aligned_cols=114 Identities=16% Similarity=0.012 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCC-CCCC-----CCcccHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGL-FSRS-----WNSKSLLEKAE 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~-----~~~~~~~~~~~ 78 (656)
.+-++|.|++|.|||||.+.++... ......+++....-... +-...++..... +... ........ ..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH-HH
Confidence 4678999999999999999999876 22233444421111000 001222222211 1110 00111111 11
Q ss_pred HHHHhh-CCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhh
Q 037310 79 DIFKVM-KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEI 128 (656)
Q Consensus 79 ~l~~~l-~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~ 128 (656)
.+...+ ...+-++++|++........+...+ . .|..+|+||-...+
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---H-AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---h-CCCEEEEEechhHH
Confidence 222222 3578899999997665555554443 2 45678888876555
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.0079 Score=55.80 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQL 50 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (656)
.|+|+|.||+||||+|..++.+. -.++.| .++-|+....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCc-eEEEEeCCCCCCh
Confidence 68999999999999999977776 333333 4555666555443
No 362
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.09 E-value=0.036 Score=53.17 Aligned_cols=24 Identities=42% Similarity=0.736 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999865
No 363
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.09 E-value=0.18 Score=50.77 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.0
Q ss_pred eEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 137 SFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 137 ~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
++++++++.+|+..++.-.............+...+++.-..+|+|.-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 689999999999999988876655333233344567777777999854
No 364
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.07 E-value=0.0066 Score=53.64 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV 43 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 43 (656)
..||.|+|.+|.||||||+++.++. ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 4689999999999999999999988 22334455554
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.07 E-value=0.012 Score=57.65 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
.++.|.|++|+|||++|.+++... ...-..++|++...+.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCCc
Confidence 588999999999999999987765 1223467888876433
No 366
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.06 E-value=0.027 Score=49.06 Aligned_cols=36 Identities=19% Similarity=-0.027 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV 43 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 43 (656)
.+.|.|++|.|||+.+..+..+. ........++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~-~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL-LDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH-HhcccCCCEEEEc
Confidence 47899999999999999888876 2223445677764
No 367
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.06 E-value=0.011 Score=54.41 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 368
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.043 Score=61.06 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++++++|+.|+||||.+.+++..+ ........+..+...... ...+-++...+.++.+... ..+.++..+.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~--~~~~~~l~~al~~- 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHA--VKDAADLRFALAA- 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccc--cCCHHHHHHHHHH-
Confidence 4799999999999999999999876 222223356666654322 2334445555555543321 1233333333332
Q ss_pred hCCccEEEEEeCCc
Q 037310 84 MKRKKFVLLLDDIW 97 (656)
Q Consensus 84 l~~~~~LlVlDdv~ 97 (656)
+.++ =++++|=..
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 2333 356666654
No 369
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.04 E-value=0.05 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998764
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.04 E-value=0.044 Score=50.43 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC----------------------------------------
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS---------------------------------------- 45 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~---------------------------------------- 45 (656)
.||+|+|++|.|||||.+.+-.-. ..-.+.+|+...
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 489999999999999999885533 111233444321
Q ss_pred ----ChhhHHHHHHHHHHHhCCCCC-CC---CcccHHHHHHHHHHhhCCccEEEEEeCCcCc---hhhhhhccccCCCCC
Q 037310 46 ----KDLQLKRIQDCIARKIGLFSR-SW---NSKSLLEKAEDIFKVMKRKKFVLLLDDIWEP---VDLAQVGLLVPSATR 114 (656)
Q Consensus 46 ----~~~~~~~~~~~i~~~l~~~~~-~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~ 114 (656)
.....++....+++..+.... +. ....-++..-.+.+.|.=++-++.+|..-+- +-...+...+.....
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 011222334444444443210 00 1112223333466777777888999998432 222233333333333
Q ss_pred CCcEEEEEceehhhhcccC
Q 037310 115 ASNKVVFTTLEFEIGGQME 133 (656)
Q Consensus 115 ~~~~iliTTR~~~~~~~~~ 133 (656)
.|-.++|.|-+-.+|+.+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 7778888888888777653
No 371
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.03 E-value=0.058 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999998764
No 372
>PRK04040 adenylate kinase; Provisional
Probab=96.02 E-value=0.0055 Score=56.73 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+|++|+||||+++.+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 373
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.015 Score=60.57 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCC------CCCCCCcc-c--HHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGL------FSRSWNSK-S--LLEK 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------~~~~~~~~-~--~~~~ 76 (656)
..++|+|++|+|||||++.++... .....++++...+..+..++.......... ...+.... . ....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468999999999999999888754 122345565544445555444433333211 11111110 0 0011
Q ss_pred HHHHHHhh--CCccEEEEEeCC
Q 037310 77 AEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 77 ~~~l~~~l--~~~~~LlVlDdv 96 (656)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 11122222 589999999999
No 374
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.045 Score=50.79 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHhhCCccEEEEEeCCcCchhhhhhc---cccCCCCCCCcEEEEEceehhhhcccCCcceEee
Q 037310 79 DIFKVMKRKKFVLLLDDIWEPVDLAQVG---LLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV 140 (656)
Q Consensus 79 ~l~~~l~~~~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l 140 (656)
.+.+.+--++-+.|||..|+--|.+++. ..+......++-++|.|-.+.++....+..+|.+
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 3444444567799999998766655532 2222222245556666767767766655554443
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.99 E-value=0.0064 Score=57.53 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999876
No 376
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.98 E-value=0.059 Score=52.85 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-----hHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-----QLKRIQDCIARKIGLFSRSWNSKSLLEKAED 79 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 79 (656)
-.-|.|+||.|.|||+|......+......+ ..-|...... .+..+.+.+..++... .......-+....
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~rql~~e~~~~--~k~~gsfte~l~~ 123 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGITRQLALELNRI--VKSFGSFTENLSK 123 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHHHHHHHHHhhh--heeecccchhHHH
Confidence 3457889999999999988777764122222 2333333222 2333333333333221 1112222233333
Q ss_pred HHHhhC------CccEEEEEeCCcCch------hhhhhccccCCCCCCCcEEEEEceehhh-------hcccCCcceEee
Q 037310 80 IFKVMK------RKKFVLLLDDIWEPV------DLAQVGLLVPSATRASNKVVFTTLEFEI-------GGQMEAHKSFEV 140 (656)
Q Consensus 80 l~~~l~------~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~~~iliTTR~~~~-------~~~~~~~~~~~l 140 (656)
+...|. +.+++.|+|++|-.. -+..+...-.....+-+.|-+|||-... -.+..-...+-+
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~ 203 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFML 203 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeecc
Confidence 333332 346899999986331 1222222223233366667788887443 222111224556
Q ss_pred ccCChhhhHHHHHHHhc
Q 037310 141 ECLGYDDSWKLFEVKVG 157 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~ 157 (656)
+.++.++.+.+++....
T Consensus 204 ~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 204 PSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CCCChHHHHHHHHHHhc
Confidence 77778888888877663
No 377
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.98 E-value=0.0092 Score=58.73 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.++|++|+|||++++.+.... .... | .+.-++++...+...++..+-..+...... . ..--.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l-~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~----~--------~gP~~ 98 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL-DSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGR----V--------YGPPG 98 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS-TTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTE----E--------EEEES
T ss_pred CcEEEECCCCCchhHHHHhhhccC-Cccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC----C--------CCCCC
Confidence 456889999999999999998876 2222 1 244566766555555543332222110000 0 00014
Q ss_pred CccEEEEEeCCcC
Q 037310 86 RKKFVLLLDDIWE 98 (656)
Q Consensus 86 ~~~~LlVlDdv~~ 98 (656)
+++.++.+||+.-
T Consensus 99 ~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 99 GKKLVLFIDDLNM 111 (272)
T ss_dssp SSEEEEEEETTT-
T ss_pred CcEEEEEecccCC
Confidence 6889999999953
No 378
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.2 Score=49.97 Aligned_cols=155 Identities=14% Similarity=0.033 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccc-------CCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFF-------DTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLFSRSWNSKSLLEK 76 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 76 (656)
.++..++|+.|+||+++|..+++..- ....+=+.+.++.. +......++. .+.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 46777999999999999999977640 00111112333321 1222222222 2222221110
Q ss_pred HHHHHHhhCCccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEc-eehhhhc-ccCCcceEeeccCChhhhHHHH
Q 037310 77 AEDIFKVMKRKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTT-LEFEIGG-QMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 77 ~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTT-R~~~~~~-~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
.-++.+-++|+|+++.... ...+...+..-. ..+.+|++| ....+.. .......+++.++++++..+.+
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp-~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPP-KDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCC-CCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 0125778899999976643 444555454443 555555544 4433332 2233567899999999988877
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
... + .+ ++.+..++...+|.-.|+..
T Consensus 159 ~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 159 LSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 653 1 11 12356666667763345544
No 379
>PRK03839 putative kinase; Provisional
Probab=95.97 E-value=0.0055 Score=56.58 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 380
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.95 E-value=0.021 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999876
No 381
>PTZ00035 Rad51 protein; Provisional
Probab=95.95 E-value=0.042 Score=55.87 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC----CCCceEEEEEeCChhhHHHHHHHHHHHhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP----NDFDLVIWVVVSKDLQLKRIQDCIARKIG 62 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (656)
.++.|+|++|+|||||+..++-.. ... ..-..++|++....+...++ ..+++..+
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 578899999999999999987654 211 12235779988776555554 33444443
No 382
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.023 Score=62.88 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
..+....||.|||||-||+.++... .+.=+..+-+++|..... +.+.+-++.++.=.-... .-.+-...
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek----HsVSrLIGaPPGYVGyee----GG~LTEaV 589 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK----HSVSRLIGAPPGYVGYEE----GGQLTEAV 589 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----HHHHHHhCCCCCCceecc----ccchhHhh
Confidence 3466779999999999999999987 222255666777655443 334444454332111112 12233334
Q ss_pred CCccE-EEEEeCCcC
Q 037310 85 KRKKF-VLLLDDIWE 98 (656)
Q Consensus 85 ~~~~~-LlVlDdv~~ 98 (656)
++++| ++.||+++.
T Consensus 590 Rr~PySViLlDEIEK 604 (786)
T COG0542 590 RRKPYSVILLDEIEK 604 (786)
T ss_pred hcCCCeEEEechhhh
Confidence 55655 899999963
No 383
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.95 E-value=0.0041 Score=52.37 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceE
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLV 39 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~ 39 (656)
|.|.|.+|+||||+|+.++... ...|.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeEE
Confidence 6789999999999999999976 5666543
No 384
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.94 E-value=0.032 Score=63.39 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=88.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc---------c----CCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF---------F----DTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW 68 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~---------~----~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 68 (656)
+++.+++.|+|+.+.||||+.+.++--. | ..-..|+.+ +..++..-++..-...+...
T Consensus 324 ~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i-~~~ig~~~si~~~lStfS~~-------- 394 (782)
T PRK00409 324 GFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEI-FADIGDEQSIEQSLSTFSGH-------- 394 (782)
T ss_pred CCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceE-EEecCCccchhhchhHHHHH--------
Confidence 3456789999999999999988885331 0 012233333 23333222222211111111
Q ss_pred CcccHHHHHHHHHHhhCCccEEEEEeCCcCchh---hhhhcc-ccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCC
Q 037310 69 NSKSLLEKAEDIFKVMKRKKFVLLLDDIWEPVD---LAQVGL-LVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLG 144 (656)
Q Consensus 69 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~-~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~ 144 (656)
..+... +...+ ..+-|+++|.+-.-.+ -..+.. .+......++.+|+||-...+.........+.-..+.
T Consensus 395 ----m~~~~~-Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 395 ----MTNIVR-ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred ----HHHHHH-HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 111112 22222 4677999999864322 222211 1111111467899999987765443222211111111
Q ss_pred h-hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcC
Q 037310 145 Y-DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSS 211 (656)
Q Consensus 145 ~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~ 211 (656)
. .+......+ + ... .+. ...|-.|++.+ |+|-.+.--|..+.+ .........++.+...
T Consensus 469 ~d~~~l~~~Yk-l-~~G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 469 FDEETLRPTYR-L-LIG-IPG---KSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEEL 528 (782)
T ss_pred EecCcCcEEEE-E-eeC-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHHH
Confidence 1 111110000 0 011 111 33477888877 577777666665544 3444566666555554
No 385
>PRK07667 uridine kinase; Provisional
Probab=95.94 E-value=0.0076 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+..+|+|.|.+|+||||+|+.+....
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999999876
No 386
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.93 E-value=0.0063 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....|.|+|++|+||||+|+.++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999986
No 387
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.92 E-value=0.011 Score=54.68 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
.++|.|+|+.|+|||||+.+++... ...|...++..-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 5789999999999999999999987 566755555543
No 388
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.92 E-value=0.021 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+-++..|.|++|+||||+++.+...+
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 45688999999999999999988776
No 389
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.90 E-value=0.031 Score=54.23 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccC--CCCCCceEEEEEeCC-hhhHHHHHHHHHHHhCCCC-----CCCCcccHHHH-
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFD--TPNDFDLVIWVVVSK-DLQLKRIQDCIARKIGLFS-----RSWNSKSLLEK- 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~--~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 76 (656)
+.++|.|.+|+|||+|+.+++++. . .+++-+.++++-+++ ..+..++...+...-.... ...........
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357999999999999999998875 2 123356778887754 4566666666655422110 01111111111
Q ss_pred ----HHHHHHhh---CCccEEEEEeCC
Q 037310 77 ----AEDIFKVM---KRKKFVLLLDDI 96 (656)
Q Consensus 77 ----~~~l~~~l---~~~~~LlVlDdv 96 (656)
.-.+.+++ .++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11123333 378999999999
No 390
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.89 E-value=0.026 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||.+.++.-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998754
No 391
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0063 Score=53.69 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 037310 7 ILGLYGMGGVGKTTLLTLIN 26 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~ 26 (656)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 392
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.025 Score=54.87 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=54.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCC-------ceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCCCCcccH-----
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDF-------DLVIWVVVSKD-LQLKRIQDCIARKIGLFSRSWNSKSL----- 73 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~----- 73 (656)
++.|.|.+|+||||++...+-.....++.| ..+++|++... .++.+-++.+..+++.++.+....+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 456679999999999877654432222223 25888987644 45666677888888765543222111
Q ss_pred ---------HHHHHHHHHhhCC-ccEEEEEeCC
Q 037310 74 ---------LEKAEDIFKVMKR-KKFVLLLDDI 96 (656)
Q Consensus 74 ---------~~~~~~l~~~l~~-~~~LlVlDdv 96 (656)
....+++...+.+ +.-++|+|-+
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 1223344444444 4568899986
No 393
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.011 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|++|+||||||+.++--.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 378999999999999999998654
No 394
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.85 E-value=0.021 Score=59.19 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCCC----CCCCcccHHHH----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLFS----RSWNSKSLLEK---- 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~---- 76 (656)
..++|.|+.|+|||||++.++... ..+.++..-+ .+.....++...++..-+... ....+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999764 2245555555 455566666666654422110 00011111111
Q ss_pred --HHHHHHhh--CCccEEEEEeCC
Q 037310 77 --AEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 77 --~~~l~~~l--~~~~~LlVlDdv 96 (656)
.-.+.+++ .++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11122222 589999999999
No 395
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00048 Score=64.91 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=75.1
Q ss_pred cccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccC-ccccCCcccCcEEe
Q 037310 341 LWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHL-LTGISNLVSLQHLD 419 (656)
Q Consensus 341 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~L~~L~~L~ 419 (656)
++..++.|...++.+.++.-..+++.|++|.|+-|.++.+.+ +..+++|+.|.|+.|.+...- ..-+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445778888888888888878889999999999999888876 788999999999988443211 12466889999999
Q ss_pred CCCCCCc-ccCc-----cccCCCCCCeEe
Q 037310 420 PARSKIR-RLPM-----ELKYLVHLKRLN 442 (656)
Q Consensus 420 l~~~~~~-~lp~-----~~~~l~~L~~L~ 442 (656)
|..|.-. +-+. .+.-|+||+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9887533 2222 266777777775
No 396
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.84 E-value=0.034 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+-+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876654
No 397
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.84 E-value=0.034 Score=50.50 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++.|.|.+|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998875
No 398
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.83 E-value=0.034 Score=53.55 Aligned_cols=40 Identities=28% Similarity=0.224 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
.++.|.|++|+||||+|.+++.+. - ..-..++|++.....
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~-~--~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKG-L--RDGDPVIYVTTEESR 60 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH-H--hcCCeEEEEEccCCH
Confidence 588999999999999999987654 1 223467888875443
No 399
>PRK05439 pantothenate kinase; Provisional
Probab=95.83 E-value=0.036 Score=55.16 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999998865
No 400
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.83 E-value=0.019 Score=60.83 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
.++.|.|.+|+|||||+.+++... ... -..++|++....
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~-a~~--g~kvlYvs~EEs 133 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQL-AKN--QMKVLYVSGEES 133 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-Hhc--CCcEEEEECcCC
Confidence 588999999999999999998876 222 235788887543
No 401
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.82 E-value=0.012 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.|.|+|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 402
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.82 E-value=0.048 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999765
No 403
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.82 E-value=0.031 Score=59.27 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=47.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEE-EEEeC-ChhhHHHHHHHHHHHhCCCCCCCCccc---HHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVI-WVVVS-KDLQLKRIQDCIARKIGLFSRSWNSKS---LLEKAEDIF 81 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~-wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~l~ 81 (656)
...|+|++|+|||||++.+++.. . ..+-++.+ ++-+. .+....++...+-.++-..+.+..... .....-.+.
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn~i-~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIANAI-T-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHHHH-h-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999865 1 12223332 33343 444455554444222222222211111 111111222
Q ss_pred Hhh--CCccEEEEEeCC
Q 037310 82 KVM--KRKKFVLLLDDI 96 (656)
Q Consensus 82 ~~l--~~~~~LlVlDdv 96 (656)
+++ .++.+||++|++
T Consensus 496 e~fre~G~dVlillDSl 512 (672)
T PRK12678 496 KRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 333 689999999999
No 404
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.023 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999964
No 405
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.81 E-value=0.02 Score=60.13 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHHhCCCC----CCCCcccHHHH----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARKIGLFS----RSWNSKSLLEK---- 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~---- 76 (656)
+.++|.|.+|+|||||+.++++.. . +.+-+.++++-++ +.....++...+...-.... ....+......
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 368999999999999999999876 2 2356777777664 45566667666654322110 00011111111
Q ss_pred --HHHHHHhh---CCccEEEEEeCC
Q 037310 77 --AEDIFKVM---KRKKFVLLLDDI 96 (656)
Q Consensus 77 --~~~l~~~l---~~~~~LlVlDdv 96 (656)
.-.+.+++ .++.+|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 11233333 489999999999
No 406
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.81 E-value=0.05 Score=56.63 Aligned_cols=87 Identities=24% Similarity=0.359 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC-----CCCCcccHHH-----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS-----RSWNSKSLLE----- 75 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~----- 75 (656)
..++|.|..|+|||||++.++... . ....++.....+.....++....+..-+... ..........
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999998865 2 2223444444555666666665544322110 0001111111
Q ss_pred HHHHHHHhh--CCccEEEEEeCC
Q 037310 76 KAEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 76 ~~~~l~~~l--~~~~~LlVlDdv 96 (656)
..-.+.+++ +++.+|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111123333 579999999999
No 407
>PRK06217 hypothetical protein; Validated
Probab=95.81 E-value=0.015 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|+|.|.+|+||||+|++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999986
No 408
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.015 Score=56.05 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++.++|+|++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 36789999999999999999999987
No 409
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.80 E-value=0.01 Score=59.45 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQ 54 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 54 (656)
+++.+.|.||+||||+|...+-.. ..+ -..+.-++.....++.++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~-A~~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL-ARR--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HHT--TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH-hhC--CCCeeEeecCCCccHHHHh
Confidence 689999999999999998888776 222 2347777777666655544
No 410
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.78 E-value=0.031 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 411
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.77 E-value=0.0099 Score=54.92 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...++|+|+|++|+|||||++.+..+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999999999998875
No 412
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.77 E-value=0.015 Score=59.48 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.++=|-|+|+.|.|||-|.-.+|+..+ +... ..+.|-.+ +.++.+.+-+.- ........+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp-~~~k-~R~HFh~F-----m~~vh~~l~~~~----------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP-IKRK-RRVHFHEF-----MLDVHSRLHQLR----------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC-cccc-ccccccHH-----HHHHHHHHHHHh----------CCCccHHHHHHH
Confidence 356688999999999999999999883 3111 11111110 112222222211 111223445556
Q ss_pred hCCccEEEEEeCCc--CchhhhhhccccCCCCCCCcEEEEEceehhh
Q 037310 84 MKRKKFVLLLDDIW--EPVDLAQVGLLVPSATRASNKVVFTTLEFEI 128 (656)
Q Consensus 84 l~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~ 128 (656)
+.++..||.||++. +..+-.-+...|.... ....++|+|.+...
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~-~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF-KRGVVLVATSNRPP 169 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH-HCCCEEEecCCCCh
Confidence 67778899999974 3333222222232222 22346666666544
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.77 E-value=0.01 Score=51.96 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
++|.|+|..|+|||||++.+++.. .+.++......+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL--KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--hHcCCceEEEEEccC
Confidence 589999999999999999999987 224555555555443
No 414
>PF13245 AAA_19: Part of AAA domain
Probab=95.76 E-value=0.027 Score=43.21 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccC-CCCCCceEEEEEe
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFD-TPNDFDLVIWVVV 44 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~-~~~~f~~~~wv~~ 44 (656)
+.+++.|.|++|.|||+++...+..... ....-+.++.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3567888999999999555554444311 1222334555543
No 415
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0043 Score=67.34 Aligned_cols=109 Identities=23% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCCCcceEecccc-CCcccc-hhHHhcCCcccEEEccCC-CCCccC----ccccCCcccCcEEeCCCCC-Ccc--cCccc
Q 037310 363 SSPHLQTLFLGSN-DLNEVN-RDFFQFMASLRVLTLSDG-SLPGHL----LTGISNLVSLQHLDPARSK-IRR--LPMEL 432 (656)
Q Consensus 363 ~~~~L~~L~l~~~-~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~----p~~~~~L~~L~~L~l~~~~-~~~--lp~~~ 432 (656)
.++.|+.|.+.++ .+.... ......+++|+.|+++++ ...... ......+++|+.|+++++. +.. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3677778877777 333321 233556788888888763 111111 1233345677777777765 332 11112
Q ss_pred cCCCCCCeEecCCcc-ccccChh-hhcCCCCCcEEEeeecC
Q 037310 433 KYLVHLKRLNLEFTR-LTRIPQE-VISNLKMLRVLRMYECG 471 (656)
Q Consensus 433 ~~l~~L~~L~l~~~~-~~~l~~~-~l~~l~~L~~L~l~~~~ 471 (656)
..+++|++|.+..|. +++..-. ...++++|++|++++|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 236677777766663 4432211 13456667777777776
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.74 E-value=0.11 Score=52.94 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh-HHHHHHHHHHHhCCC
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ-LKRIQDCIARKIGLF 64 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~ 64 (656)
+-++|.++||.||||||-..+++.++ .-...-..+..|+.....- ..+-++..++-++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 36899999999999997666666666 2123445677887765542 333445555555554
No 417
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.74 E-value=0.035 Score=50.72 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEE---eCChhhHHHHHHHHHHHhC----CCCCCCCcc------
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVV---VSKDLQLKRIQDCIARKIG----LFSRSWNSK------ 71 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~----~~~~~~~~~------ 71 (656)
...|.|+|..|-||||.|..++.+. ....+. +..+. ......-...+..+. .+. .....+...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA--VGHGKK-VGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH--HHCCCe-EEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 4689999999999999999998886 223333 33333 221222222222210 010 000011111
Q ss_pred -cHHHHHHHHHHhhCC-ccEEEEEeCCcC-----chhhhhhccccCCCCCCCcEEEEEceehh
Q 037310 72 -SLLEKAEDIFKVMKR-KKFVLLLDDIWE-----PVDLAQVGLLVPSATRASNKVVFTTLEFE 127 (656)
Q Consensus 72 -~~~~~~~~l~~~l~~-~~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~iliTTR~~~ 127 (656)
...+..+...+.+.. +-=++|||.+-. .-+.+.+...+.+.. .+..||+|=|...
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-GMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-CCCEEEEECCCCC
Confidence 111222333444434 445999999832 233444555554433 7778999999864
No 418
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.0095 Score=56.30 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|...-.+|+|+|++|+||||||+.++...
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34566789999999999999999999876
No 419
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.73 E-value=0.0069 Score=56.91 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998864
No 420
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.71 E-value=0.059 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998764
No 421
>PRK00625 shikimate kinase; Provisional
Probab=95.71 E-value=0.0079 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|.|+|++|+||||+|+.++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999976
No 422
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.70 E-value=0.069 Score=51.14 Aligned_cols=24 Identities=50% Similarity=0.689 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998764
No 423
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.68 E-value=0.038 Score=62.28 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+.++|++|+|||.+|+.++...
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999976
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.68 E-value=0.0089 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++++|+|++|+||||+|+.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 425
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.68 E-value=0.0073 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999975
No 426
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.67 E-value=0.15 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC
Confidence 479999999999999999998875
No 427
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.086 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 479999999999999999998765
No 428
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.62 E-value=0.042 Score=60.34 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKI 61 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 61 (656)
-++..|.|.+|.||||+++.+..........-...+.+...+..-..++...+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 368899999999999999888765411111112466777777777777776665544
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.61 E-value=0.01 Score=51.85 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|+|++|+|||||++.++..+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 430
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.59 E-value=0.029 Score=48.37 Aligned_cols=103 Identities=16% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCe
Q 037310 362 SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKR 440 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~ 440 (656)
.++++|+.+.+.. .+..+....|..+++|+.+.+..+ ....-...+....+|+.+.+.. .+..++.. +..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4455566665553 345555555666656666666554 3322223455555566666644 34444332 444666666
Q ss_pred EecCCccccccChhhhcCCCCCcEEEeee
Q 037310 441 LNLEFTRLTRIPQEVISNLKMLRVLRMYE 469 (656)
Q Consensus 441 L~l~~~~~~~l~~~~l~~l~~L~~L~l~~ 469 (656)
+.+..+ +..++...+.+. +|+.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666443 444544445554 566655543
No 431
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.59 E-value=0.017 Score=57.85 Aligned_cols=48 Identities=29% Similarity=0.361 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQD 55 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 55 (656)
.+++.+.|.|||||||+|.+.+-.. ...+ ..++=|+..+..+..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l-A~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL-AESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH-HHcC--CcEEEEEeCCCCchHhhhc
Confidence 5789999999999999999987776 2222 4477787777666665543
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.59 E-value=0.0098 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999875
No 433
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.58 E-value=0.014 Score=54.70 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=43.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
+.+.++.|.|.+|.||||++..+.... . ....+.++...-.....-...+...-..................+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~-~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF-G----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc-c----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999998876 2 45566666433222111112222211111111111122233344444
Q ss_pred hhCCccEEEEEeCCc
Q 037310 83 VMKRKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~ 97 (656)
..-.+++=+|+|..-
T Consensus 88 ~a~~~~~nii~E~tl 102 (199)
T PF06414_consen 88 YAIENRYNIIFEGTL 102 (199)
T ss_dssp HHHHCT--EEEE--T
T ss_pred HHHHcCCCEEEecCC
Confidence 445566778889874
No 434
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.57 E-value=0.067 Score=50.75 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEE-------EEEeCChhhHHHH--HHHHHHHhCCCCCCCC-----
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVI-------WVVVSKDLQLKRI--QDCIARKIGLFSRSWN----- 69 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~-------wv~~~~~~~~~~~--~~~i~~~l~~~~~~~~----- 69 (656)
.+..|.++||+|.||||..+++..+......+ ..++ -++.....++++. .+.+.++-+...+...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 46688899999999999999998876222221 1121 2223334455553 4566666554332211
Q ss_pred --cccHHHHHHHHHHhhCCccEEEEEeCC
Q 037310 70 --SKSLLEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 70 --~~~~~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
....++.++.+.+.....++ +++|-.
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~-~liDTP 124 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDY-VLIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCE-EEEcCC
Confidence 12566777777776555555 445554
No 435
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.57 E-value=0.044 Score=53.76 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.+..+|.|.|.+|.|||||+..+.+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999999986
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.57 E-value=0.012 Score=54.58 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
++.|.|++|+|||++|.+++... .+.-..+.|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~---~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG---LARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH---HHCCCcEEEEECCCC
Confidence 36789999999999999998876 222345778887543
No 437
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.56 E-value=0.067 Score=55.78 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCCC----CCCCcccHHHH----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLFS----RSWNSKSLLEK---- 76 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~---- 76 (656)
..++|.|..|+|||||++.+++.. ..+.+++.-+ .+.....++....+..-+... ....+......
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 578999999999999999999865 2244455544 455556566554444322110 00011111111
Q ss_pred --HHHHHHhh--CCccEEEEEeCC
Q 037310 77 --AEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 77 --~~~l~~~l--~~~~~LlVlDdv 96 (656)
.-.+.+++ .++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11122233 589999999999
No 438
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.56 E-value=0.0086 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|++|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 439
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.55 E-value=0.052 Score=52.27 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhh--HHHHHHHHHHHh--CCCCCC--CCcccHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQ--LKRIQDCIARKI--GLFSRS--WNSKSLLEKAEDI 80 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 80 (656)
+|+|.|.+|+||||+|+.+.+.+ ...+ ..+..++...... -......+..+. +...+. +..-+.+...+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999999876 2211 2244555433322 222222222222 112222 3444666666666
Q ss_pred HHhhCCc
Q 037310 81 FKVMKRK 87 (656)
Q Consensus 81 ~~~l~~~ 87 (656)
....+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 6665544
No 440
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.55 E-value=0.038 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999875
No 441
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.55 E-value=0.0087 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.-|.|+|+.|+||+++|+.+....
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhc
Confidence 457899999999999999888875
No 442
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.55 E-value=0.038 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|++|.||||+|+.++...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 443
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.54 E-value=0.009 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.54 E-value=0.011 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38999999999999999999874
No 445
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.014 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+|.+|+||||+...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 7899999999999999998877753
No 446
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.53 E-value=0.068 Score=48.38 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKR 86 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (656)
++.|.|.+|+|||++|.+++... ...++|+.-....+. ++...|.+-.......+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 36799999999999999998753 235667765554443 23333332211112222222 222233333311
Q ss_pred --ccEEEEEeCC
Q 037310 87 --KKFVLLLDDI 96 (656)
Q Consensus 87 --~~~LlVlDdv 96 (656)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337999997
No 447
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.22 Score=46.73 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++=|.++|++|+|||.||++|++.-
T Consensus 188 pprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 45678899999999999999999975
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.50 E-value=0.0099 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.|+|++|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.50 E-value=0.011 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++++|+|++|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999865
No 450
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.48 E-value=0.043 Score=61.24 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 81 (656)
-+++-|+|++|+||||||.+++... . ..-..++|+......+. ..++.++..... ......++....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a-~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANA-Q--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 3578899999999999998877654 2 22245789988776663 255555543221 12233455555555
Q ss_pred Hhh-CCccEEEEEeCCc
Q 037310 82 KVM-KRKKFVLLLDDIW 97 (656)
Q Consensus 82 ~~l-~~~~~LlVlDdv~ 97 (656)
... +++.-++|+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 555 3467799999985
No 451
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.48 E-value=0.012 Score=59.26 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++.|+|++|+||||||+.+++..
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999887
No 452
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.014 Score=53.47 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|+|+|.+|+||||+|+.++...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999999987
No 453
>PRK13949 shikimate kinase; Provisional
Probab=95.48 E-value=0.014 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.|+|+|++|+||||+|+.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999986
No 454
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.48 E-value=0.013 Score=54.53 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|.|.|.+|+||||+|+.++.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999975
No 455
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.47 E-value=0.081 Score=51.38 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhhcccCCCCCCceE-EEEEeC-ChhhHHHHHHHHHHHhCCC-------CCCCCccc---
Q 037310 6 GILGLYGMGGVGKTTLL-TLINNKFFDTPNDFDLV-IWVVVS-KDLQLKRIQDCIARKIGLF-------SRSWNSKS--- 72 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~--- 72 (656)
+.++|.|.+|+|||+|| ..+++.. +-+.+ +++-++ +.....++...+...-... ..+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 35789999999999996 5565542 23444 555554 4456666776666433211 11111110
Q ss_pred ----HHHHHHHHHHhhCCccEEEEEeCC
Q 037310 73 ----LLEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 73 ----~~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
.-...+.++. +++.+|+++||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 0111222322 589999999999
No 456
>PRK14530 adenylate kinase; Provisional
Probab=95.46 E-value=0.011 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|+|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 457
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.44 E-value=0.085 Score=52.96 Aligned_cols=86 Identities=22% Similarity=0.335 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCC-------CCCCCcc-cH--H
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLF-------SRSWNSK-SL--L 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~-------~~~~~~~-~~--~ 74 (656)
..++|.|+.|+|||||++.++... . -+.....-+ .+..+..++.......-... ..+.... .. .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999999865 1 223333333 34455555555554432211 1111110 00 0
Q ss_pred HHHHHHHHhh--CCccEEEEEeCC
Q 037310 75 EKAEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 75 ~~~~~l~~~l--~~~~~LlVlDdv 96 (656)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1111122222 589999999998
No 458
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.44 E-value=0.017 Score=56.87 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
-+++.|.|.+|+|||++|.+++... ......++||+....+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCH
Confidence 3689999999999999999999987 4457789999886543
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.43 E-value=0.059 Score=51.82 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|+|||||.+.++.-.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999999997644
No 460
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.42 E-value=0.11 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999999986
No 461
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.21 Score=48.60 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999998753
No 462
>PRK14529 adenylate kinase; Provisional
Probab=95.41 E-value=0.049 Score=51.59 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCce--EEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDL--VIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
|.|.|++|+||||+|+.++..+ .. .+.+. ++.-.+..........+.++... .....+.....+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHHh
Confidence 7889999999999999999987 22 22221 11111222222223333333321 22233444455555553
Q ss_pred C-ccEEEEEeCCc
Q 037310 86 R-KKFVLLLDDIW 97 (656)
Q Consensus 86 ~-~~~LlVlDdv~ 97 (656)
+ ...-+|||++-
T Consensus 74 ~~~~~g~iLDGfP 86 (223)
T PRK14529 74 QDGKNGWLLDGFP 86 (223)
T ss_pred ccCCCcEEEeCCC
Confidence 2 24569999984
No 463
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.41 E-value=0.11 Score=51.00 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++...
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999875
No 464
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.40 E-value=0.053 Score=56.56 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL 38 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~ 38 (656)
+..+|+|++|.||||+.+.++.+......+++.
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 568999999999999999999887555555543
No 465
>PLN02459 probable adenylate kinase
Probab=95.38 E-value=0.039 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.|.|++|+||||+|..++..+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47778999999999999999976
No 466
>PRK13948 shikimate kinase; Provisional
Probab=95.38 E-value=0.016 Score=53.12 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.....|+++|+.|+||||+++.+++..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4456789999999999999999999876
No 467
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0056 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=8.3
Q ss_pred CcEEeCCCCCCcccCccc
Q 037310 415 LQHLDPARSKIRRLPMEL 432 (656)
Q Consensus 415 L~~L~l~~~~~~~lp~~~ 432 (656)
|++|++++|+++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 468
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.35 E-value=0.097 Score=51.16 Aligned_cols=24 Identities=42% Similarity=0.798 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++.-.
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999998766
No 469
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.35 E-value=0.17 Score=61.03 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++=|.++|++|+|||.||+++|.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999986
No 470
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.35 E-value=0.078 Score=55.50 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCC-----CCCCcccHHH-----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFS-----RSWNSKSLLE----- 75 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~----- 75 (656)
..++|.|+.|+|||||++.++... .. -..+++....+.....++.+.+...-.... ..........
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999999865 11 124555555666677666666654422110 0001111111
Q ss_pred HHHHHHHhh--CCccEEEEEeCC
Q 037310 76 KAEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 76 ~~~~l~~~l--~~~~~LlVlDdv 96 (656)
..-.+.+++ +++.+|+++|++
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111122222 589999999999
No 471
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.33 E-value=0.043 Score=60.32 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|+|+.|.|||||++.+..-+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998766
No 472
>PRK08149 ATP synthase SpaL; Validated
Probab=95.33 E-value=0.063 Score=55.85 Aligned_cols=86 Identities=15% Similarity=0.329 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-CChhhHHHHHHHHHHHhCCC-------CCCCCcc---cHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV-SKDLQLKRIQDCIARKIGLF-------SRSWNSK---SLL 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~-------~~~~~~~---~~~ 74 (656)
..++|.|++|+|||||+..++... ..+.+++..+ .+..+..++........... ..+.... ...
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 468999999999999999998864 2233333333 23445555555555543211 1111110 000
Q ss_pred HHHHHHHHhh--CCccEEEEEeCC
Q 037310 75 EKAEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 75 ~~~~~l~~~l--~~~~~LlVlDdv 96 (656)
...-.+.+++ +++.+|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1111122222 589999999999
No 473
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.33 E-value=0.016 Score=55.91 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL 48 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (656)
.+..+|+|+|.||+|||||...+..++ ..+++--.|+=|+=++++
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCC
Confidence 457799999999999999999998888 444454455555544444
No 474
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.32 E-value=0.019 Score=55.28 Aligned_cols=86 Identities=12% Similarity=0.215 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEE-EE---EeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVI-WV---VVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED 79 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~-wv---~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 79 (656)
.+=|+.++|++|+||.-+|+.+++..++..-+-+.|. |+ ++.....+..-..++.+ .
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~-------------------~ 169 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKN-------------------R 169 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHH-------------------H
Confidence 3558999999999999999999998743333322221 11 12222223322333322 2
Q ss_pred HHHhh-CCccEEEEEeCCcCchh--hhhhccc
Q 037310 80 IFKVM-KRKKFVLLLDDIWEPVD--LAQVGLL 108 (656)
Q Consensus 80 l~~~l-~~~~~LlVlDdv~~~~~--~~~~~~~ 108 (656)
+++.+ .-.|-|+|+|++|.+.. ++.+...
T Consensus 170 v~~~v~~C~rslFIFDE~DKmp~gLld~lkpf 201 (344)
T KOG2170|consen 170 VRGTVQACQRSLFIFDEVDKLPPGLLDVLKPF 201 (344)
T ss_pred HHHHHHhcCCceEEechhhhcCHhHHHHHhhh
Confidence 23322 24789999999986532 4444443
No 475
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.32 E-value=0.02 Score=57.42 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|++.+||++.|.|||||||+|..++.-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 5778999999999999999998888776
No 476
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.32 E-value=0.083 Score=55.10 Aligned_cols=48 Identities=27% Similarity=0.479 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe-CChhhHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV-SKDLQLKRIQDCIA 58 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 58 (656)
..++|.|..|+|||||++.++... +.+...+..+ .+.....+......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~ 204 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTL 204 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhh
Confidence 478999999999999999998765 2333444444 34555556555543
No 477
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.07 Score=55.60 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC-------CCCCCcc---cHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF-------SRSWNSK---SLLE 75 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~---~~~~ 75 (656)
..++|.|..|+|||||++.++... .. ...++.+...+.....+.....+..-+.. ..+.... ....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999999875 21 22344443344456666655554442211 1111110 1111
Q ss_pred HHHHHHHhh--CCccEEEEEeCCc
Q 037310 76 KAEDIFKVM--KRKKFVLLLDDIW 97 (656)
Q Consensus 76 ~~~~l~~~l--~~~~~LlVlDdv~ 97 (656)
..-.+.+++ +++.+|+++|++-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchH
Confidence 111222222 5799999999994
No 478
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.31 E-value=0.014 Score=67.29 Aligned_cols=194 Identities=17% Similarity=0.121 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCC--CceEEEEEeCChh----hHH--HHHHHHHHHhCCCCCCCCcccHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPND--FDLVIWVVVSKDL----QLK--RIQDCIARKIGLFSRSWNSKSLLEKAE 78 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~--f~~~~wv~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~ 78 (656)
-+.|+|.+|.||||+...++-.. ..+.. -+..+|+.+.... ... .+..-+...+.... ...+...
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~------~~~~~~~ 296 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG------IAKQLIE 296 (824)
T ss_pred heeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC------CcchhhH
Confidence 47899999999999999888765 22221 2334444432111 111 12222222222211 1222233
Q ss_pred HHHHhhCCccEEEEEeCCcCchh------hhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEeeccCChhhhHHHH
Q 037310 79 DIFKVMKRKKFVLLLDDIWEPVD------LAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVECLGYDDSWKLF 152 (656)
Q Consensus 79 ~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~~l~~~ea~~L~ 152 (656)
.+...+...++++.+|++|+... ...+...++.. +.+++|+|+|....-........+++..+.++......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~--~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY--PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc--cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 33567788999999999986522 22233333433 67889999988766544444455677777766555433
Q ss_pred HHHh-----cCCCCCCCCCh--------HHHHHHHHHHcCCCchHHHHHHHHHcC-----CCChhHHHHHHHHHhc
Q 037310 153 EVKV-----GRDTLDSHPDI--------PELAKTVVKECGGLPLALITVGRAMAS-----KKTPREWEHAIEVLSS 210 (656)
Q Consensus 153 ~~~~-----~~~~~~~~~~~--------~~~~~~i~~~~~g~Plal~~~a~~l~~-----~~~~~~~~~~~~~l~~ 210 (656)
.... .... ...... ......-.+.....|+.+.+.+..-.. ....+.++...+.+..
T Consensus 375 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 375 LYQWLDAFIEDWF-GDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHhhh-cccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 3221 1111 011111 001123333447779988888744331 1344556655554444
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.31 E-value=0.044 Score=61.15 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|+|..|+||||||+.+..-+
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998766
No 480
>PLN02200 adenylate kinase family protein
Probab=95.31 E-value=0.015 Score=55.83 Aligned_cols=26 Identities=31% Similarity=0.194 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|+|.|++|+||||+|+.++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.31 E-value=0.015 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+|.+.|.-|.||||+++.+++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999986
No 482
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.30 E-value=0.091 Score=54.70 Aligned_cols=86 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHHhCCC-------CCCCCcc-c--HH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARKIGLF-------SRSWNSK-S--LL 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~-~--~~ 74 (656)
..++|.|.+|+|||||++.++... . .+......++ +.....++.......-... +.+.... . ..
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999998765 1 2333344443 3455666655554432111 1111110 0 00
Q ss_pred HHHHHHHHhh--CCccEEEEEeCC
Q 037310 75 EKAEDIFKVM--KRKKFVLLLDDI 96 (656)
Q Consensus 75 ~~~~~l~~~l--~~~~~LlVlDdv 96 (656)
...-.+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1111122222 589999999999
No 483
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.30 E-value=0.017 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 037310 6 GILGLYGMGGVGKTTLLTLIN 26 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~ 26 (656)
..++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 579999999999999999976
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.29 E-value=0.032 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.28 E-value=0.017 Score=55.50 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+...+|+|.|++|.|||||++.++...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999877
No 486
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.12 Score=46.46 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.|.|+.|+|||||.|.++-=.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc
Confidence 367899999999999999998654
No 487
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.24 E-value=0.079 Score=50.30 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=102.0
Q ss_pred ccceeEeecchhhHh-----hhc-cCCCCCCcceEeccccCCccc----c------hhHHhcCCcccEEEccCCCCCccC
Q 037310 342 WKEVTRMSLMQIRIR-----RLL-ESSSSPHLQTLFLGSNDLNEV----N------RDFFQFMASLRVLTLSDGSLPGHL 405 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~-----~l~-~~~~~~~L~~L~l~~~~~~~~----~------~~~~~~l~~L~~L~l~~~~~~~~~ 405 (656)
+..+..+.+++|.+. .+. .+.+-.+|+...++.-..... + ...+-++++|+..+|++|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 345667777777542 222 345566777777665421111 1 122556788888888888666555
Q ss_pred ccc----cCCcccCcEEeCCCCCCcccC--------------ccccCCCCCCeEecCCccccccChhh----hcCCCCCc
Q 037310 406 LTG----ISNLVSLQHLDPARSKIRRLP--------------MELKYLVHLKRLNLEFTRLTRIPQEV----ISNLKMLR 463 (656)
Q Consensus 406 p~~----~~~L~~L~~L~l~~~~~~~lp--------------~~~~~l~~L~~L~l~~~~~~~l~~~~----l~~l~~L~ 463 (656)
|+. +++-..|.+|.+++|.+..+- ....+-+.|+......|.+...|... +..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 543 445667788888887665432 12345567777777777666555431 22234677
Q ss_pred EEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhH--hhhcCcccccccCCceeecccc
Q 037310 464 VLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALR--MLLDSPRLQSLSTPSLCLKHCC 534 (656)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~~~ll~~L~l~~~~ 534 (656)
++.+..|.+-. ..........+..+++|+.|++..+.+.... .+....+-++.+ +.|.+..|-
T Consensus 189 ~vki~qNgIrp-------egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l-rEL~lnDCl 253 (388)
T COG5238 189 EVKIQQNGIRP-------EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL-RELRLNDCL 253 (388)
T ss_pred eEEeeecCcCc-------chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh-hhccccchh
Confidence 77777776300 0011123344556778888888766542221 122223333434 555555554
No 488
>PRK05922 type III secretion system ATPase; Validated
Probab=95.24 E-value=0.051 Score=56.59 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|.|+.|+|||||++.++...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 458999999999999999999865
No 489
>PRK13947 shikimate kinase; Provisional
Probab=95.20 E-value=0.014 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 490
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.19 E-value=0.12 Score=51.91 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||.+.++...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998764
No 491
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.19 E-value=0.013 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhcc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|+|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 492
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.29 Score=52.89 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.++|++|.|||.||++++.+. .+. | ++.| .+++.++ +.. .....+-..+.+.-
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA-~VP--F-----f~iS-GS~FVem-------fVG-------vGAsRVRdLF~qAk 239 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEA-GVP--F-----FSIS-GSDFVEM-------FVG-------VGASRVRDLFEQAK 239 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhccc-CCC--c-----eecc-chhhhhh-------hcC-------CCcHHHHHHHHHhh
Confidence 3457899999999999999999987 222 2 1111 1111111 111 01112223344444
Q ss_pred CCccEEEEEeCCcCc----------------hhhhhhccccCCCCCCCcEEEE-Eceehhhhcc----cCC-cceEeecc
Q 037310 85 KRKKFVLLLDDIWEP----------------VDLAQVGLLVPSATRASNKVVF-TTLEFEIGGQ----MEA-HKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~----------------~~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~----~~~-~~~~~l~~ 142 (656)
++-++++++|.+|.. +-+.++.........+...|++ .|..+.+.+. .+. .+.+.++.
T Consensus 240 k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 240 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCC
Confidence 566899999998743 1233443333333212233444 3333434321 122 23455555
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
-+-..-.++++-++.........++ ..|++.+-|.-
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfs 355 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFS 355 (596)
T ss_pred cchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcc
Confidence 5556777777766665543333333 33777777754
No 493
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.02 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|+|+|.+|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.17 E-value=0.016 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998865
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.16 E-value=0.029 Score=57.53 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHH-HHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKR-IQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
-..|.|.|++|.||||+++.+.... .......++. +..+..... -...+..+ .+ ...........++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q-----~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQ-----RE-VGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEc-----cc-cCCCCcCHHHHHHHh
Confidence 4689999999999999999988765 2233333332 222211110 00000000 00 011112234456677
Q ss_pred hCCccEEEEEeCCcCchhhhh
Q 037310 84 MKRKKFVLLLDDIWEPVDLAQ 104 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~~~~ 104 (656)
+...+=.|++|++.+......
T Consensus 192 lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHH
Confidence 788888999999966555443
No 496
>PLN02348 phosphoribulokinase
Probab=95.14 E-value=0.095 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.+-+|+|.|.+|+||||+|+.+...+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999887
No 497
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.14 E-value=0.061 Score=57.89 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC-----CCceEEEEEeCC-h--------------h-h-HHHHHHHHHHHhCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN-----DFDLVIWVVVSK-D--------------L-Q-LKRIQDCIARKIGL 63 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~-----~f~~~~wv~~~~-~--------------~-~-~~~~~~~i~~~l~~ 63 (656)
..|+|+|+.|+|||||.+.+........+ .--.+.|+.-.. . . . ...-.+..+..+.-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 36899999999999999999665411111 111233332111 0 0 0 02233344444433
Q ss_pred CCCCCC----cccHHHH-HHHHHHhhCCccEEEEEeCCcCchh---hhhhccccCCCCCCCcEEEEEceehhhhcccCCc
Q 037310 64 FSRSWN----SKSLLEK-AEDIFKVMKRKKFVLLLDDIWEPVD---LAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAH 135 (656)
Q Consensus 64 ~~~~~~----~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~ 135 (656)
++.... .-+-.+. .-.+.+.+-.++=+||||..-|.-| .+.+...+... . ..||+.|-++.+..... .
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~-Gtvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--E-GTVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--C-CeEEEEeCCHHHHHhhc-c
Confidence 222210 0112222 2234455567888999999865533 44455555554 3 45788888888877754 4
Q ss_pred ceEeecc
Q 037310 136 KSFEVEC 142 (656)
Q Consensus 136 ~~~~l~~ 142 (656)
+.+.+++
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5566654
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.11 E-value=0.019 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.|+|+|+.|.||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4569999999999999999999875
No 499
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.10 E-value=0.1 Score=48.80 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
.-|.++|--|+|||.|++++.+.+ .+..-..+-|+-..-.++.. |..++. ..
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~---~~~glrLVEV~k~dl~~Lp~----l~~~Lr---------------------~~ 137 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEY---ADEGLRLVEVDKEDLATLPD----LVELLR---------------------AR 137 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHH---HhcCCeEEEEcHHHHhhHHH----HHHHHh---------------------cC
Confidence 357899999999999999999988 33333333332222112211 112111 14
Q ss_pred CccEEEEEeCCc---CchhhhhhccccCCCC--CCCcEEEEEceeh
Q 037310 86 RKKFVLLLDDIW---EPVDLAQVGLLVPSAT--RASNKVVFTTLEF 126 (656)
Q Consensus 86 ~~~~LlVlDdv~---~~~~~~~~~~~l~~~~--~~~~~iliTTR~~ 126 (656)
..||+|..||+. ....+..+...+..+. ++...++..|.++
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 689999999984 2233444545444332 2444455444443
No 500
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.10 E-value=0.042 Score=53.88 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
.-.+|.|.|+.|.||||++..+.... ...-..++.+.-........+ .+... ...... .....+...
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v--~~~~~~---~~~~~l~~~ 145 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQV--NEKAGL---TFARGLRAI 145 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEe--CCcCCc---CHHHHHHHH
Confidence 34589999999999999999988765 111123333322111111100 01110 110111 234456666
Q ss_pred hCCccEEEEEeCCcCchhhhh
Q 037310 84 MKRKKFVLLLDDIWEPVDLAQ 104 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~~~~ 104 (656)
++..+=.++++++.+.+....
T Consensus 146 lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 146 LRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred hccCCCEEEeccCCCHHHHHH
Confidence 777888899999976655443
Done!