Query 037310
Match_columns 656
No_of_seqs 252 out of 3641
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 18:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-40 1.3E-44 359.1 19.3 294 3-319 150-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-33 1.8E-37 335.2 29.1 292 2-319 144-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.2E-34 1.1E-38 315.6 15.7 267 3-312 148-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1E-30 3.4E-35 289.4 25.1 286 3-316 145-449 (591)
5 4fmz_A Internalin; leucine ric 99.8 5.7E-21 2E-25 196.7 11.9 279 326-634 49-338 (347)
6 2id5_A Lingo-1, leucine rich r 99.8 1.7E-20 5.9E-25 201.9 13.7 280 324-621 14-311 (477)
7 4fmz_A Internalin; leucine ric 99.8 1.7E-20 5.8E-25 193.1 11.6 258 338-634 39-316 (347)
8 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-21 1.5E-25 194.2 6.1 248 343-621 50-307 (313)
9 3o6n_A APL1; leucine-rich repe 99.8 1.4E-20 4.8E-25 197.0 9.1 214 340-579 42-259 (390)
10 4fcg_A Uncharacterized protein 99.8 1.6E-20 5.6E-25 191.0 8.3 219 363-614 79-310 (328)
11 4fcg_A Uncharacterized protein 99.8 1E-20 3.4E-25 192.6 6.0 226 387-634 79-306 (328)
12 2id5_A Lingo-1, leucine rich r 99.8 2.5E-20 8.7E-25 200.6 9.3 267 324-616 35-331 (477)
13 3t6q_A CD180 antigen; protein- 99.8 6.3E-20 2.1E-24 203.8 12.0 170 324-506 15-189 (606)
14 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-21 1.7E-25 193.6 2.5 241 365-636 50-298 (313)
15 3v47_A TOLL-like receptor 5B a 99.8 2.6E-20 8.9E-25 199.3 7.3 146 325-472 14-166 (455)
16 2z80_A TOLL-like receptor 2, v 99.8 2E-20 6.8E-25 193.0 6.0 270 320-618 30-314 (353)
17 3oja_B Anopheles plasmodium-re 99.8 5.2E-20 1.8E-24 203.5 8.7 214 340-579 48-265 (597)
18 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-19 5.4E-24 200.6 12.5 148 324-473 14-166 (606)
19 1xku_A Decorin; proteoglycan, 99.8 1.7E-19 5.9E-24 184.1 11.5 242 341-615 29-273 (330)
20 2z63_A TOLL-like receptor 4, v 99.8 1.7E-19 5.9E-24 198.8 11.0 147 324-472 10-161 (570)
21 3o6n_A APL1; leucine-rich repe 99.8 3.4E-19 1.2E-23 186.4 12.2 245 324-579 48-306 (390)
22 3oja_B Anopheles plasmodium-re 99.8 2.7E-19 9.1E-24 197.8 11.6 270 324-616 54-356 (597)
23 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-19 4.4E-24 198.9 8.6 148 324-472 8-160 (549)
24 3v47_A TOLL-like receptor 5B a 99.8 1.5E-19 5E-24 193.5 8.5 136 324-459 33-177 (455)
25 2ft3_A Biglycan; proteoglycan, 99.8 2.1E-19 7.3E-24 183.5 9.2 239 342-614 32-273 (332)
26 1o6v_A Internalin A; bacterial 99.8 3.6E-19 1.2E-23 190.7 11.0 141 325-471 50-210 (466)
27 3t6q_A CD180 antigen; protein- 99.8 2.3E-19 7.8E-24 199.3 8.9 216 406-634 271-505 (606)
28 4ecn_A Leucine-rich repeat pro 99.8 5.6E-20 1.9E-24 208.1 2.8 276 339-636 444-783 (876)
29 3rgz_A Protein brassinosteroid 99.8 4.1E-19 1.4E-23 202.1 9.7 256 342-624 393-723 (768)
30 2z66_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 179.9 7.8 242 347-616 11-259 (306)
31 3zyi_A Leucine-rich repeat-con 99.8 5.9E-19 2E-23 188.3 9.7 145 326-471 59-207 (452)
32 3vq2_A TLR4, TOLL-like recepto 99.8 5.6E-19 1.9E-23 196.2 9.8 131 324-454 35-171 (606)
33 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-18 5.7E-23 188.6 13.1 142 324-472 3-150 (520)
34 1xku_A Decorin; proteoglycan, 99.8 7.1E-19 2.4E-23 179.5 9.2 282 325-636 35-323 (330)
35 3zyj_A Leucine-rich repeat-con 99.8 7.3E-19 2.5E-23 186.9 9.5 236 326-579 48-290 (440)
36 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-19 1.1E-23 182.2 6.3 284 325-639 37-327 (332)
37 3rgz_A Protein brassinosteroid 99.8 2.7E-19 9.1E-24 203.7 5.5 280 326-634 183-495 (768)
38 1o6v_A Internalin A; bacterial 99.8 1.9E-18 6.5E-23 185.1 11.6 60 409-471 173-232 (466)
39 4ecn_A Leucine-rich repeat pro 99.8 8.5E-19 2.9E-23 198.5 9.3 294 324-634 494-832 (876)
40 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-18 4.6E-23 199.9 10.5 147 324-472 7-160 (844)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.7E-18 6E-23 190.1 10.9 142 324-472 34-181 (562)
42 4eco_A Uncharacterized protein 99.7 8.7E-20 3E-24 202.9 0.2 261 342-636 248-543 (636)
43 3bz5_A Internalin-J, INLJ; leu 99.7 4.2E-18 1.4E-22 181.1 13.0 196 325-555 46-243 (457)
44 1ziw_A TOLL-like receptor 3; i 99.7 1.8E-18 6.1E-23 194.8 10.5 148 324-472 7-157 (680)
45 4eco_A Uncharacterized protein 99.7 5.2E-19 1.8E-23 196.6 5.5 294 325-634 253-592 (636)
46 2z7x_B TOLL-like receptor 1, v 99.7 2.3E-18 8E-23 187.4 9.8 123 346-472 3-127 (520)
47 3o53_A Protein LRIM1, AGAP0063 99.7 7.9E-19 2.7E-23 177.9 5.6 254 345-636 12-269 (317)
48 2z63_A TOLL-like receptor 4, v 99.7 3.5E-18 1.2E-22 188.4 10.2 139 324-462 31-175 (570)
49 3bz5_A Internalin-J, INLJ; leu 99.7 3.2E-18 1.1E-22 182.0 9.4 249 339-623 38-304 (457)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.8E-18 2.3E-22 185.4 11.8 126 344-472 32-158 (562)
51 3o53_A Protein LRIM1, AGAP0063 99.7 7E-19 2.4E-23 178.3 2.8 243 342-622 33-279 (317)
52 1ziw_A TOLL-like receptor 3; i 99.7 1.7E-18 5.7E-23 195.0 6.2 149 346-507 7-156 (680)
53 3zyj_A Leucine-rich repeat-con 99.7 1.2E-17 4E-22 177.5 11.8 242 345-616 45-290 (440)
54 2z80_A TOLL-like receptor 2, v 99.7 3.8E-18 1.3E-22 175.9 7.3 262 348-634 36-306 (353)
55 2z66_A Variable lymphocyte rec 99.7 5.7E-18 1.9E-22 170.9 8.3 239 326-581 12-261 (306)
56 3zyi_A Leucine-rich repeat-con 99.7 1.2E-17 4E-22 178.2 10.5 242 345-616 56-301 (452)
57 3oja_A Leucine-rich immune mol 99.7 3.6E-18 1.2E-22 183.3 6.1 237 362-636 31-269 (487)
58 1ozn_A Reticulon 4 receptor; N 99.7 7.6E-18 2.6E-22 168.0 6.5 216 326-581 16-238 (285)
59 2z81_A CD282 antigen, TOLL-lik 99.7 1.1E-17 3.7E-22 183.5 8.2 128 324-451 29-163 (549)
60 3oja_A Leucine-rich immune mol 99.7 3.7E-18 1.3E-22 183.2 3.8 234 342-613 33-270 (487)
61 1ozn_A Reticulon 4 receptor; N 99.7 3E-17 1E-21 163.7 10.0 220 346-618 14-238 (285)
62 2z62_A TOLL-like receptor 4, v 99.7 6.2E-17 2.1E-21 160.6 11.7 144 326-471 12-160 (276)
63 3j0a_A TOLL-like receptor 5; m 99.7 2.7E-17 9.1E-22 189.2 8.3 149 324-472 27-186 (844)
64 3rfs_A Internalin B, repeat mo 99.7 2.4E-16 8.3E-21 155.8 11.5 195 339-556 37-233 (272)
65 1wwl_A Monocyte differentiatio 99.7 2.8E-18 9.7E-23 173.4 -2.6 243 343-616 43-307 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.7 2.5E-16 8.5E-21 172.5 12.2 244 324-617 43-296 (622)
67 1h6u_A Internalin H; cell adhe 99.6 7.5E-16 2.5E-20 155.1 13.7 192 340-580 38-229 (308)
68 2o6q_A Variable lymphocyte rec 99.6 1E-15 3.4E-20 151.2 14.3 195 324-534 19-216 (270)
69 3rfs_A Internalin B, repeat mo 99.6 1E-15 3.5E-20 151.3 13.7 173 324-508 44-217 (272)
70 4g8a_A TOLL-like receptor 4; l 99.6 2.7E-16 9.2E-21 175.5 10.8 147 325-473 35-186 (635)
71 3m19_A Variable lymphocyte rec 99.6 3.4E-15 1.1E-19 145.7 14.3 170 325-507 18-190 (251)
72 1jl5_A Outer protein YOPM; leu 99.6 8.4E-16 2.9E-20 163.2 10.7 118 343-471 131-248 (454)
73 1p9a_G Platelet glycoprotein I 99.6 4.5E-16 1.6E-20 155.1 7.3 126 343-471 10-135 (290)
74 2z62_A TOLL-like receptor 4, v 99.6 1E-15 3.6E-20 151.7 9.5 143 353-508 17-161 (276)
75 4g8a_A TOLL-like receptor 4; l 99.6 1.8E-15 6.2E-20 168.8 11.9 136 321-456 52-193 (635)
76 2o6q_A Variable lymphocyte rec 99.6 9.1E-15 3.1E-19 144.3 14.6 172 324-507 40-216 (270)
77 1p9a_G Platelet glycoprotein I 99.6 6.1E-15 2.1E-19 146.9 12.5 191 325-535 14-207 (290)
78 2ca6_A RAN GTPase-activating p 99.6 2.2E-16 7.5E-21 164.8 1.9 233 362-616 29-314 (386)
79 1h6u_A Internalin H; cell adhe 99.6 1.6E-14 5.6E-19 145.3 14.8 188 324-537 44-231 (308)
80 3m19_A Variable lymphocyte rec 99.6 9.9E-15 3.4E-19 142.4 12.3 176 344-535 15-191 (251)
81 1jl5_A Outer protein YOPM; leu 99.6 6.7E-15 2.3E-19 156.3 11.9 139 343-508 111-249 (454)
82 2ast_B S-phase kinase-associat 99.6 7.6E-16 2.6E-20 157.5 4.5 218 345-578 49-282 (336)
83 1wwl_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 158.3 0.6 201 363-580 93-308 (312)
84 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.5E-20 148.2 3.9 194 366-579 32-237 (239)
85 3g06_A SSPH2 (leucine-rich rep 99.6 1.2E-14 4E-19 159.3 12.6 220 323-584 63-300 (622)
86 4ezg_A Putative uncharacterize 99.6 9.6E-15 3.3E-19 136.7 10.1 150 340-507 41-192 (197)
87 1h6t_A Internalin B; cell adhe 99.5 1.4E-14 4.9E-19 144.3 11.1 172 340-537 43-214 (291)
88 2xwt_C Thyrotropin receptor; s 99.5 3.4E-15 1.2E-19 144.6 5.5 196 389-617 31-238 (239)
89 3e6j_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 135.1 13.0 129 343-471 40-170 (229)
90 2ast_B S-phase kinase-associat 99.5 8.8E-16 3E-20 157.0 0.6 221 366-615 48-282 (336)
91 2v9t_B SLIT homolog 2 protein 99.5 3.2E-14 1.1E-18 135.5 10.8 149 346-507 14-163 (220)
92 4ay9_X Follicle-stimulating ho 99.5 4E-15 1.4E-19 152.8 4.4 232 348-634 14-251 (350)
93 4ezg_A Putative uncharacterize 99.5 4.4E-14 1.5E-18 132.2 11.2 145 324-471 47-192 (197)
94 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.5E-18 132.0 13.2 146 325-471 15-163 (220)
95 4glp_A Monocyte differentiatio 99.5 1.9E-15 6.5E-20 152.5 0.9 108 364-471 90-208 (310)
96 1h6t_A Internalin B; cell adhe 99.5 2.4E-13 8.3E-18 135.4 15.7 164 324-508 49-212 (291)
97 1m9s_A Internalin B; cell inva 99.5 5.1E-14 1.7E-18 154.1 10.8 173 339-537 39-211 (605)
98 2v70_A SLIT-2, SLIT homolog 2 99.5 7.6E-14 2.6E-18 132.9 10.6 149 346-507 14-164 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.8E-18 131.0 12.4 146 325-471 15-164 (220)
100 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 132.7 11.8 153 342-508 18-171 (229)
101 2qen_A Walker-type ATPase; unk 99.5 5.4E-13 1.8E-17 137.0 17.5 270 6-313 32-349 (350)
102 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.7E-18 135.7 11.3 152 335-508 33-184 (263)
103 1m9s_A Internalin B; cell inva 99.5 3E-14 1E-18 155.9 8.2 189 344-581 22-210 (605)
104 3goz_A Leucine-rich repeat-con 99.5 1.7E-14 5.9E-19 148.8 4.7 39 565-616 250-295 (362)
105 2xot_A Amphoterin-induced prot 99.5 1.9E-13 6.6E-18 140.8 12.1 171 325-508 22-201 (361)
106 2o6s_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 127.0 13.2 131 365-507 28-159 (208)
107 4ay9_X Follicle-stimulating ho 99.4 5E-14 1.7E-18 144.6 6.4 236 325-579 13-257 (350)
108 2o6s_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 126.8 11.8 144 327-471 13-159 (208)
109 1z7x_W Ribonuclease inhibitor; 99.4 2.3E-15 7.7E-20 161.2 -4.6 250 340-616 110-409 (461)
110 1xeu_A Internalin C; cellular 99.4 9.3E-14 3.2E-18 136.2 7.0 170 341-537 17-186 (263)
111 4glp_A Monocyte differentiatio 99.4 3.3E-14 1.1E-18 143.4 3.6 197 343-580 91-306 (310)
112 1z7x_W Ribonuclease inhibitor; 99.4 4.7E-15 1.6E-19 158.7 -3.4 232 366-616 86-352 (461)
113 1w5s_A Origin recognition comp 99.4 9.3E-13 3.2E-17 138.5 13.6 276 4-297 49-371 (412)
114 2fna_A Conserved hypothetical 99.4 7.1E-12 2.4E-16 128.9 19.9 271 6-312 31-356 (357)
115 2ca6_A RAN GTPase-activating p 99.4 4.5E-14 1.5E-18 147.2 2.1 230 342-582 31-317 (386)
116 2ell_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 122.7 7.1 105 364-471 23-131 (168)
117 2je0_A Acidic leucine-rich nuc 99.4 4.6E-13 1.6E-17 119.0 7.2 105 364-471 16-124 (149)
118 2xot_A Amphoterin-induced prot 99.4 6.8E-13 2.3E-17 136.7 9.2 179 344-535 19-201 (361)
119 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.7E-17 119.5 9.9 148 350-509 4-153 (176)
120 3cvr_A Invasion plasmid antige 99.4 8.3E-13 2.8E-17 142.8 8.8 180 344-585 60-247 (571)
121 3goz_A Leucine-rich repeat-con 99.3 4.3E-14 1.5E-18 145.8 -1.9 233 349-616 4-264 (362)
122 1a9n_A U2A', U2A'; complex (nu 99.3 6.4E-13 2.2E-17 121.7 6.1 132 337-471 13-151 (176)
123 1w8a_A SLIT protein; signaling 99.3 3.2E-12 1.1E-16 118.8 10.3 127 344-471 9-137 (192)
124 2o6r_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 115.8 11.3 127 344-471 8-135 (177)
125 2ell_A Acidic leucine-rich nuc 99.3 2.8E-12 9.7E-17 116.4 8.6 128 343-472 24-159 (168)
126 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.3E-17 115.1 6.9 125 342-468 16-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.3 9.7E-12 3.3E-16 115.5 11.9 124 346-471 13-137 (193)
128 3ogk_B Coronatine-insensitive 99.3 4.2E-13 1.4E-17 148.3 2.8 126 342-468 191-326 (592)
129 1dce_A Protein (RAB geranylger 99.3 7E-12 2.4E-16 136.3 9.6 139 346-502 426-566 (567)
130 3cvr_A Invasion plasmid antige 99.2 1.4E-11 4.7E-16 133.3 10.6 182 324-537 62-244 (571)
131 3ogk_B Coronatine-insensitive 99.2 1.8E-13 6.2E-18 151.3 -4.5 230 363-617 190-448 (592)
132 4b8c_D Glucose-repressible alc 99.2 4.5E-12 1.5E-16 142.2 6.1 113 381-508 216-328 (727)
133 2wfh_A SLIT homolog 2 protein 99.2 2.9E-11 9.8E-16 112.3 9.9 126 367-508 12-138 (193)
134 2qby_B CDC6 homolog 3, cell di 99.2 3.9E-10 1.3E-14 117.2 19.6 269 4-296 44-338 (384)
135 2v1u_A Cell division control p 99.2 3.7E-10 1.3E-14 117.5 19.0 273 3-296 42-350 (387)
136 1w8a_A SLIT protein; signaling 99.2 5.9E-11 2E-15 110.2 10.3 125 325-450 12-140 (192)
137 4b8c_D Glucose-repressible alc 99.2 3.1E-11 1.1E-15 135.4 8.7 110 360-472 219-328 (727)
138 2p1m_B Transport inhibitor res 99.2 1.1E-11 3.8E-16 136.9 4.5 83 364-446 104-194 (594)
139 1dce_A Protein (RAB geranylger 99.1 8.5E-11 2.9E-15 127.8 9.9 121 344-467 442-567 (567)
140 2o6r_A Variable lymphocyte rec 99.1 2.2E-10 7.5E-15 104.8 11.0 127 326-453 12-141 (177)
141 2p1m_B Transport inhibitor res 99.1 3.7E-12 1.3E-16 140.8 -2.1 39 567-617 455-493 (594)
142 1fnn_A CDC6P, cell division co 99.1 2.1E-09 7.1E-14 111.9 18.4 273 6-297 45-351 (389)
143 2r9u_A Variable lymphocyte rec 99.1 2.5E-10 8.4E-15 104.0 9.7 101 368-471 15-116 (174)
144 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 103.5 9.7 103 366-471 10-113 (170)
145 1ds9_A Outer arm dynein; leuci 99.1 2.4E-12 8.3E-17 120.4 -5.4 83 385-471 44-126 (198)
146 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 103.1 8.6 110 344-454 13-123 (174)
147 3g39_A Variable lymphocyte rec 99.0 5.7E-10 1.9E-14 101.2 9.7 110 343-453 9-119 (170)
148 1njg_A DNA polymerase III subu 99.0 1.6E-09 5.3E-14 104.7 13.1 176 5-192 45-231 (250)
149 1ds9_A Outer arm dynein; leuci 99.0 7.9E-12 2.7E-16 116.8 -4.3 107 361-471 44-151 (198)
150 2qby_A CDC6 homolog 1, cell di 99.0 1.4E-09 4.7E-14 113.0 11.6 274 4-296 44-347 (386)
151 2chg_A Replication factor C sm 98.9 4.9E-09 1.7E-13 99.6 11.8 162 6-189 39-204 (226)
152 3sb4_A Hypothetical leucine ri 98.8 6.5E-10 2.2E-14 112.8 1.6 265 341-632 23-324 (329)
153 2ifg_A High affinity nerve gro 98.7 1.5E-08 5.1E-13 103.5 8.8 101 349-449 14-116 (347)
154 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.6E-13 102.3 9.8 102 368-472 11-115 (347)
155 1hqc_A RUVB; extended AAA-ATPa 98.7 2E-07 6.8E-12 94.1 13.9 155 5-192 38-214 (324)
156 1sxj_B Activator 1 37 kDa subu 98.6 5.8E-08 2E-12 98.0 8.7 162 6-189 43-210 (323)
157 3sb4_A Hypothetical leucine ri 98.6 5.1E-08 1.7E-12 98.7 8.3 57 364-421 100-156 (329)
158 3un9_A NLR family member X1; l 98.6 1.5E-08 5.2E-13 104.0 3.7 156 343-508 72-251 (372)
159 3un9_A NLR family member X1; l 98.6 1.5E-08 5.2E-13 104.0 2.0 161 364-536 71-252 (372)
160 1iqp_A RFCS; clamp loader, ext 98.5 2.7E-07 9.2E-12 93.2 9.5 163 5-192 46-215 (327)
161 2z4s_A Chromosomal replication 98.5 1.8E-07 6E-12 98.2 7.9 163 5-188 130-305 (440)
162 4fdw_A Leucine rich hypothetic 98.5 4.3E-07 1.5E-11 94.1 10.6 214 361-615 132-355 (401)
163 3bos_A Putative DNA replicatio 98.4 1.3E-07 4.6E-12 90.8 5.4 153 4-189 51-217 (242)
164 3te6_A Regulatory protein SIR3 98.4 1.5E-06 5.1E-11 85.9 12.1 153 3-158 43-213 (318)
165 2chq_A Replication factor C sm 98.4 1.1E-06 3.6E-11 88.4 10.6 157 6-188 39-203 (319)
166 1jr3_A DNA polymerase III subu 98.3 1.5E-06 5.3E-11 89.4 11.1 173 5-189 38-221 (373)
167 4fdw_A Leucine rich hypothetic 98.3 1E-06 3.5E-11 91.3 9.0 211 344-579 136-356 (401)
168 1d2n_A N-ethylmaleimide-sensit 98.3 1.3E-05 4.5E-10 78.3 16.4 177 4-211 63-264 (272)
169 1sxj_A Activator 1 95 kDa subu 98.3 4.9E-06 1.7E-10 89.3 13.5 167 5-189 77-253 (516)
170 3h4m_A Proteasome-activating n 98.3 1.2E-05 4E-10 79.3 15.2 158 4-188 50-230 (285)
171 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.4E-05 8.4E-10 75.9 16.6 160 5-189 39-222 (262)
172 1l8q_A Chromosomal replication 98.2 2.6E-06 9E-11 85.7 8.9 154 5-184 37-203 (324)
173 1a5t_A Delta prime, HOLB; zinc 98.2 2.1E-05 7.1E-10 79.3 14.5 91 86-185 107-201 (334)
174 1xwi_A SKD1 protein; VPS4B, AA 98.1 5.6E-05 1.9E-09 75.7 16.4 161 5-190 45-224 (322)
175 3syl_A Protein CBBX; photosynt 98.1 8.8E-06 3E-10 81.3 10.0 132 5-160 67-221 (309)
176 1sxj_E Activator 1 40 kDa subu 98.1 7E-06 2.4E-10 83.8 8.6 100 86-188 133-236 (354)
177 3pfi_A Holliday junction ATP-d 98.1 3.7E-05 1.3E-09 77.8 13.8 149 5-189 55-227 (338)
178 3pvs_A Replication-associated 98.1 2.5E-05 8.4E-10 81.7 12.7 155 5-188 50-214 (447)
179 1jbk_A CLPB protein; beta barr 98.0 4.6E-06 1.6E-10 76.7 5.8 26 4-29 42-67 (195)
180 3b9p_A CG5977-PA, isoform A; A 98.0 8.7E-05 3E-09 73.5 15.4 157 5-190 54-234 (297)
181 3d8b_A Fidgetin-like protein 1 98.0 5.9E-05 2E-09 76.7 14.2 158 4-190 116-296 (357)
182 3eie_A Vacuolar protein sortin 98.0 5.8E-05 2E-09 75.6 13.8 159 5-190 51-229 (322)
183 1sxj_D Activator 1 41 kDa subu 98.0 1.3E-05 4.4E-10 81.8 8.9 170 6-187 59-233 (353)
184 3uk6_A RUVB-like 2; hexameric 98.0 1.4E-05 4.7E-10 82.1 9.1 92 88-187 190-301 (368)
185 3u61_B DNA polymerase accessor 98.0 3.3E-05 1.1E-09 77.6 11.7 150 5-184 48-211 (324)
186 2ra8_A Uncharacterized protein 97.9 1.6E-05 5.6E-10 80.7 8.6 156 362-534 136-318 (362)
187 3e4g_A ATP synthase subunit S, 97.9 9.9E-06 3.4E-10 72.2 6.1 82 390-471 62-150 (176)
188 3cf0_A Transitional endoplasmi 97.9 6.9E-05 2.4E-09 74.3 13.0 153 5-184 49-223 (301)
189 4b4t_J 26S protease regulatory 97.9 0.00017 5.8E-09 73.0 15.7 151 5-182 182-354 (405)
190 2qp9_X Vacuolar protein sortin 97.9 0.00011 3.7E-09 74.6 13.9 157 6-190 85-262 (355)
191 3vfd_A Spastin; ATPase, microt 97.9 0.00015 5.2E-09 74.7 14.7 158 5-190 148-327 (389)
192 1sxj_C Activator 1 40 kDa subu 97.9 4E-05 1.4E-09 77.6 9.7 152 7-184 48-207 (340)
193 2ra8_A Uncharacterized protein 97.8 1.2E-05 4E-10 81.8 5.0 132 363-507 170-318 (362)
194 4b4t_L 26S protease subunit RP 97.8 0.0002 6.9E-09 73.7 13.7 151 5-182 215-387 (437)
195 2zan_A Vacuolar protein sortin 97.8 0.00016 5.6E-09 75.7 13.3 161 5-190 167-346 (444)
196 3ec2_A DNA replication protein 97.8 1.3E-05 4.6E-10 72.8 4.3 25 5-29 38-62 (180)
197 4b4t_H 26S protease regulatory 97.8 0.00028 9.5E-09 72.5 14.2 151 5-182 243-415 (467)
198 2gno_A DNA polymerase III, gam 97.8 0.0001 3.5E-09 72.8 10.7 130 5-156 18-152 (305)
199 1lv7_A FTSH; alpha/beta domain 97.8 0.00049 1.7E-08 66.4 15.4 156 5-187 45-223 (257)
200 3rw6_A Nuclear RNA export fact 97.8 4.9E-06 1.7E-10 80.1 1.0 81 386-467 167-258 (267)
201 1io0_A Tropomodulin; LRR prote 97.7 1.8E-05 6.3E-10 72.2 4.3 110 361-471 32-162 (185)
202 4b4t_M 26S protease regulatory 97.7 0.00018 6.1E-09 74.0 12.0 150 5-182 215-387 (434)
203 2kjq_A DNAA-related protein; s 97.7 7E-06 2.4E-10 71.9 0.9 37 6-45 37-73 (149)
204 4b4t_I 26S protease regulatory 97.7 0.00035 1.2E-08 71.0 13.2 150 5-182 216-388 (437)
205 1io0_A Tropomodulin; LRR prote 97.7 3E-05 1E-09 70.8 4.9 118 382-508 29-163 (185)
206 3hu3_A Transitional endoplasmi 97.6 0.00063 2.1E-08 71.8 15.1 157 5-188 238-414 (489)
207 2w58_A DNAI, primosome compone 97.6 5.2E-05 1.8E-09 70.3 6.1 36 6-44 55-90 (202)
208 4b4t_K 26S protease regulatory 97.6 0.00016 5.6E-09 74.2 10.1 151 5-182 206-379 (428)
209 2ce7_A Cell division protein F 97.6 0.00066 2.2E-08 71.0 14.1 150 6-182 50-221 (476)
210 3e4g_A ATP synthase subunit S, 97.5 0.00011 3.7E-09 65.5 6.0 93 405-508 53-151 (176)
211 2r62_A Cell division protease 97.5 9.8E-05 3.3E-09 71.9 5.9 151 6-183 45-219 (268)
212 1in4_A RUVB, holliday junction 97.5 0.0026 8.9E-08 63.8 16.3 47 137-186 174-220 (334)
213 3cf2_A TER ATPase, transitiona 97.5 0.00069 2.4E-08 75.2 12.6 151 5-182 238-407 (806)
214 3n70_A Transport activator; si 97.4 0.00018 6.2E-09 62.6 6.2 23 7-29 26-48 (145)
215 2p65_A Hypothetical protein PF 97.4 0.00015 5.2E-09 65.9 5.9 25 5-29 43-67 (187)
216 3t15_A Ribulose bisphosphate c 97.4 0.0011 3.9E-08 65.0 12.3 26 4-29 35-60 (293)
217 1ixz_A ATP-dependent metallopr 97.4 0.0042 1.4E-07 59.6 16.0 147 8-182 52-221 (254)
218 1iy2_A ATP-dependent metallopr 97.4 0.0046 1.6E-07 60.2 16.4 148 8-182 76-245 (278)
219 3rw6_A Nuclear RNA export fact 97.4 0.00024 8.3E-09 68.2 6.8 79 362-442 167-257 (267)
220 1ofh_A ATP-dependent HSL prote 97.4 0.00076 2.6E-08 67.0 10.5 25 5-29 50-74 (310)
221 4fs7_A Uncharacterized protein 97.2 0.00016 5.4E-09 74.8 4.1 106 361-470 158-263 (394)
222 2x8a_A Nuclear valosin-contain 97.2 0.0031 1.1E-07 61.2 12.5 127 8-158 47-193 (274)
223 4fcw_A Chaperone protein CLPB; 97.1 0.0016 5.3E-08 64.8 10.3 38 6-46 48-85 (311)
224 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0035 1.2E-07 65.9 12.9 145 7-182 66-236 (499)
225 2bjv_A PSP operon transcriptio 97.1 0.00084 2.9E-08 65.0 7.6 38 6-46 30-67 (265)
226 3co5_A Putative two-component 97.1 0.00027 9.3E-09 61.3 3.6 23 7-29 29-51 (143)
227 2c9o_A RUVB-like 1; hexameric 97.1 0.0013 4.6E-08 69.1 9.6 89 89-185 297-406 (456)
228 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0006 2E-08 66.6 5.5 68 6-98 124-193 (331)
229 1ojl_A Transcriptional regulat 97.0 0.0018 6E-08 64.1 9.0 24 6-29 26-49 (304)
230 3m6a_A ATP-dependent protease 97.0 0.0024 8.3E-08 68.5 10.5 25 5-29 108-132 (543)
231 1n0w_A DNA repair protein RAD5 97.0 0.002 7E-08 61.2 8.9 41 6-47 25-69 (243)
232 2cvh_A DNA repair and recombin 97.0 0.0023 7.8E-08 59.8 9.0 86 6-98 21-116 (220)
233 1g5t_A COB(I)alamin adenosyltr 96.9 0.00058 2E-08 61.7 4.3 118 6-127 29-164 (196)
234 3pxg_A Negative regulator of g 96.9 0.0029 1E-07 66.6 9.8 128 6-158 202-340 (468)
235 3hr8_A Protein RECA; alpha and 96.8 0.0018 6.3E-08 64.8 7.4 85 6-98 62-150 (356)
236 3io5_A Recombination and repai 96.8 0.0026 8.7E-08 61.9 8.1 85 7-97 30-121 (333)
237 1qvr_A CLPB protein; coiled co 96.8 0.0025 8.4E-08 72.7 9.3 132 6-156 192-345 (854)
238 3lw7_A Adenylate kinase relate 96.8 0.0066 2.3E-07 54.2 10.3 23 6-29 2-24 (179)
239 1v5w_A DMC1, meiotic recombina 96.8 0.0058 2E-07 61.4 10.5 55 6-62 123-181 (343)
240 2b8t_A Thymidine kinase; deoxy 96.7 0.00051 1.8E-08 64.0 2.4 114 5-128 12-128 (223)
241 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0016 5.4E-08 61.6 5.9 38 6-46 24-61 (235)
242 2z43_A DNA repair and recombin 96.7 0.0045 1.5E-07 61.8 9.1 89 6-96 108-212 (324)
243 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0084 2.9E-07 67.5 12.3 133 5-156 207-362 (758)
244 3pxi_A Negative regulator of g 96.7 0.0013 4.4E-08 74.1 5.4 37 7-46 523-559 (758)
245 1xp8_A RECA protein, recombina 96.7 0.0036 1.2E-07 63.2 8.1 84 6-97 75-162 (366)
246 2zr9_A Protein RECA, recombina 96.5 0.0043 1.5E-07 62.3 7.7 85 6-98 62-150 (349)
247 1ypw_A Transitional endoplasmi 96.5 0.012 4.1E-07 66.3 12.0 151 5-182 238-407 (806)
248 1jr3_D DNA polymerase III, del 96.5 0.012 4.1E-07 59.2 10.6 155 5-187 18-183 (343)
249 3umf_A Adenylate kinase; rossm 96.5 0.0071 2.4E-07 56.0 8.0 26 4-29 28-53 (217)
250 2i1q_A DNA repair and recombin 96.4 0.0073 2.5E-07 60.2 8.8 90 6-97 99-214 (322)
251 4gt6_A Cell surface protein; l 96.4 0.011 3.9E-07 60.7 10.4 83 382-467 258-341 (394)
252 3ice_A Transcription terminati 96.4 0.0023 7.9E-08 63.8 4.6 88 6-96 175-270 (422)
253 3sr0_A Adenylate kinase; phosp 96.4 0.0056 1.9E-07 56.4 6.8 23 7-29 2-24 (206)
254 3pxi_A Negative regulator of g 96.4 0.0087 3E-07 67.3 9.8 128 6-158 202-340 (758)
255 3cf2_A TER ATPase, transitiona 96.3 0.0069 2.4E-07 67.2 8.4 149 6-181 512-682 (806)
256 3dm5_A SRP54, signal recogniti 96.3 0.027 9.3E-07 57.9 12.1 26 4-29 99-124 (443)
257 1u94_A RECA protein, recombina 96.3 0.0058 2E-07 61.4 7.0 84 6-97 64-151 (356)
258 2px0_A Flagellar biosynthesis 96.2 0.011 3.7E-07 57.9 8.5 87 4-96 104-191 (296)
259 3lda_A DNA repair protein RAD5 96.2 0.012 4.2E-07 60.0 9.1 55 6-62 179-237 (400)
260 4a74_A DNA repair and recombin 96.2 0.017 6E-07 54.1 9.6 41 6-47 26-70 (231)
261 3trf_A Shikimate kinase, SK; a 96.2 0.0023 7.8E-08 58.0 3.2 27 3-29 3-29 (185)
262 1pzn_A RAD51, DNA repair and r 96.2 0.012 4.1E-07 59.2 8.8 91 6-98 132-242 (349)
263 1vma_A Cell division protein F 96.1 0.012 4.2E-07 57.7 8.2 92 3-97 102-196 (306)
264 1qhx_A CPT, protein (chloramph 96.1 0.0029 9.9E-08 56.9 3.3 24 6-29 4-27 (178)
265 2qgz_A Helicase loader, putati 96.1 0.0052 1.8E-07 60.7 5.4 25 5-29 152-176 (308)
266 3kb2_A SPBC2 prophage-derived 96.1 0.0027 9.4E-08 56.7 3.1 24 6-29 2-25 (173)
267 3fwy_A Light-independent proto 96.1 0.0032 1.1E-07 62.2 3.7 41 3-46 46-86 (314)
268 3tau_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 58.0 3.8 27 3-29 6-32 (208)
269 3bh0_A DNAB-like replicative h 96.1 0.016 5.6E-07 57.4 8.9 48 6-58 69-116 (315)
270 1r6b_X CLPA protein; AAA+, N-t 96.0 0.006 2E-07 68.7 6.1 24 6-29 489-512 (758)
271 1sky_E F1-ATPase, F1-ATP synth 96.0 0.012 4.1E-07 60.8 7.7 52 6-59 152-204 (473)
272 3t61_A Gluconokinase; PSI-biol 96.0 0.0029 1E-07 58.3 3.0 25 5-29 18-42 (202)
273 1uf9_A TT1252 protein; P-loop, 96.0 0.004 1.4E-07 57.3 3.8 28 1-28 4-31 (203)
274 1ly1_A Polynucleotide kinase; 96.0 0.0041 1.4E-07 55.9 3.6 23 5-27 2-24 (181)
275 3vaa_A Shikimate kinase, SK; s 95.9 0.004 1.4E-07 57.2 3.3 25 5-29 25-49 (199)
276 1kgd_A CASK, peripheral plasma 95.9 0.0044 1.5E-07 55.9 3.3 24 6-29 6-29 (180)
277 1zp6_A Hypothetical protein AT 95.8 0.0047 1.6E-07 56.3 3.4 25 5-29 9-33 (191)
278 1kag_A SKI, shikimate kinase I 95.8 0.0039 1.3E-07 55.7 2.7 24 6-29 5-28 (173)
279 3kl4_A SRP54, signal recogniti 95.8 0.028 9.7E-07 57.7 9.3 26 4-29 96-121 (433)
280 1ukz_A Uridylate kinase; trans 95.8 0.0062 2.1E-07 56.1 4.1 27 3-29 13-39 (203)
281 3uie_A Adenylyl-sulfate kinase 95.8 0.0053 1.8E-07 56.5 3.5 26 4-29 24-49 (200)
282 4h09_A Hypothetical leucine ri 95.7 0.023 7.7E-07 58.1 8.5 104 362-468 214-318 (379)
283 1ex7_A Guanylate kinase; subst 95.7 0.0039 1.3E-07 56.3 2.3 24 6-29 2-25 (186)
284 1nks_A Adenylate kinase; therm 95.7 0.0052 1.8E-07 56.0 3.2 24 6-29 2-25 (194)
285 2ck3_D ATP synthase subunit be 95.7 0.072 2.5E-06 54.8 11.8 53 6-60 154-207 (482)
286 2rhm_A Putative kinase; P-loop 95.7 0.0062 2.1E-07 55.5 3.6 26 4-29 4-29 (193)
287 4h09_A Hypothetical leucine ri 95.7 0.019 6.4E-07 58.7 7.6 107 360-469 235-342 (379)
288 2ze6_A Isopentenyl transferase 95.7 0.0055 1.9E-07 58.7 3.3 24 6-29 2-25 (253)
289 1zuh_A Shikimate kinase; alpha 95.7 0.0055 1.9E-07 54.5 3.1 26 4-29 6-31 (168)
290 1qvr_A CLPB protein; coiled co 95.6 0.014 4.9E-07 66.4 7.2 24 6-29 589-612 (854)
291 3e70_C DPA, signal recognition 95.6 0.029 9.9E-07 55.6 8.5 26 4-29 128-153 (328)
292 2bbw_A Adenylate kinase 4, AK4 95.6 0.0061 2.1E-07 58.1 3.3 26 4-29 26-51 (246)
293 1kht_A Adenylate kinase; phosp 95.6 0.006 2E-07 55.5 3.1 24 6-29 4-27 (192)
294 2xxa_A Signal recognition part 95.6 0.035 1.2E-06 57.3 9.1 41 3-45 98-138 (433)
295 4gt6_A Cell surface protein; l 95.6 0.073 2.5E-06 54.6 11.6 126 360-504 260-386 (394)
296 1via_A Shikimate kinase; struc 95.5 0.0052 1.8E-07 55.1 2.5 24 6-29 5-28 (175)
297 4eun_A Thermoresistant glucoki 95.5 0.0068 2.3E-07 55.7 3.3 25 5-29 29-53 (200)
298 3tr0_A Guanylate kinase, GMP k 95.5 0.0066 2.3E-07 55.9 3.3 24 6-29 8-31 (205)
299 1tev_A UMP-CMP kinase; ploop, 95.5 0.0073 2.5E-07 55.1 3.5 25 5-29 3-27 (196)
300 1knq_A Gluconate kinase; ALFA/ 95.5 0.0078 2.7E-07 53.9 3.6 25 5-29 8-32 (175)
301 3iij_A Coilin-interacting nucl 95.5 0.0059 2E-07 55.0 2.8 25 5-29 11-35 (180)
302 2qor_A Guanylate kinase; phosp 95.5 0.0062 2.1E-07 56.2 2.9 26 4-29 11-36 (204)
303 1j8m_F SRP54, signal recogniti 95.5 0.034 1.2E-06 54.4 8.3 90 5-97 98-190 (297)
304 1nlf_A Regulatory protein REPA 95.5 0.039 1.3E-06 53.6 8.8 43 6-48 31-80 (279)
305 3c8u_A Fructokinase; YP_612366 95.5 0.0084 2.9E-07 55.5 3.7 26 4-29 21-46 (208)
306 2c95_A Adenylate kinase 1; tra 95.5 0.0074 2.5E-07 55.1 3.3 26 4-29 8-33 (196)
307 3a00_A Guanylate kinase, GMP k 95.4 0.0064 2.2E-07 55.1 2.8 24 6-29 2-25 (186)
308 2bdt_A BH3686; alpha-beta prot 95.4 0.0085 2.9E-07 54.4 3.6 23 6-28 3-25 (189)
309 1ye8_A Protein THEP1, hypothet 95.4 0.008 2.7E-07 54.0 3.3 23 7-29 2-24 (178)
310 1fx0_B ATP synthase beta chain 95.4 0.04 1.4E-06 57.0 8.7 52 7-60 167-219 (498)
311 2bwj_A Adenylate kinase 5; pho 95.4 0.0075 2.6E-07 55.2 3.1 25 5-29 12-36 (199)
312 3ney_A 55 kDa erythrocyte memb 95.4 0.0081 2.8E-07 54.6 3.2 25 5-29 19-43 (197)
313 2iyv_A Shikimate kinase, SK; t 95.4 0.0059 2E-07 55.2 2.3 24 6-29 3-26 (184)
314 1y63_A LMAJ004144AAA protein; 95.4 0.0087 3E-07 54.1 3.4 24 5-28 10-33 (184)
315 1cke_A CK, MSSA, protein (cyti 95.4 0.0079 2.7E-07 56.5 3.2 25 5-29 5-29 (227)
316 4gp7_A Metallophosphoesterase; 95.4 0.0083 2.9E-07 53.5 3.2 22 5-26 9-30 (171)
317 3asz_A Uridine kinase; cytidin 95.4 0.0093 3.2E-07 55.2 3.7 25 5-29 6-30 (211)
318 2plr_A DTMP kinase, probable t 95.4 0.022 7.5E-07 52.6 6.2 25 5-29 4-28 (213)
319 3cm0_A Adenylate kinase; ATP-b 95.3 0.009 3.1E-07 54.0 3.3 24 6-29 5-28 (186)
320 2cdn_A Adenylate kinase; phosp 95.3 0.0099 3.4E-07 54.6 3.6 25 5-29 20-44 (201)
321 1e6c_A Shikimate kinase; phosp 95.3 0.0071 2.4E-07 53.9 2.5 24 6-29 3-26 (173)
322 1qf9_A UMP/CMP kinase, protein 95.3 0.0093 3.2E-07 54.2 3.3 25 5-29 6-30 (194)
323 2j41_A Guanylate kinase; GMP, 95.3 0.0093 3.2E-07 55.0 3.4 25 5-29 6-30 (207)
324 2jaq_A Deoxyguanosine kinase; 95.3 0.0085 2.9E-07 55.1 3.1 23 7-29 2-24 (205)
325 2if2_A Dephospho-COA kinase; a 95.3 0.0088 3E-07 55.1 3.2 23 6-29 2-24 (204)
326 2qt1_A Nicotinamide riboside k 95.3 0.011 3.7E-07 54.6 3.8 25 5-29 21-45 (207)
327 3rfe_A Platelet glycoprotein I 95.3 0.021 7.2E-07 48.1 5.2 53 417-471 12-66 (130)
328 1jjv_A Dephospho-COA kinase; P 95.3 0.01 3.5E-07 54.7 3.6 22 6-27 3-24 (206)
329 1zu4_A FTSY; GTPase, signal re 95.2 0.038 1.3E-06 54.6 7.7 40 3-45 103-142 (320)
330 1odf_A YGR205W, hypothetical 3 95.2 0.012 4.3E-07 57.3 4.1 27 3-29 29-55 (290)
331 4e22_A Cytidylate kinase; P-lo 95.2 0.012 4E-07 56.3 3.8 25 5-29 27-51 (252)
332 2ffh_A Protein (FFH); SRP54, s 95.2 0.05 1.7E-06 55.8 8.7 38 4-44 97-134 (425)
333 2vli_A Antibiotic resistance p 95.2 0.007 2.4E-07 54.6 2.1 25 5-29 5-29 (183)
334 1lvg_A Guanylate kinase, GMP k 95.2 0.0086 3E-07 54.9 2.7 25 5-29 4-28 (198)
335 1uj2_A Uridine-cytidine kinase 95.2 0.012 4E-07 56.4 3.7 26 4-29 21-46 (252)
336 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.011 3.9E-07 56.7 3.6 26 4-29 3-28 (260)
337 4fs7_A Uncharacterized protein 95.1 0.065 2.2E-06 54.9 9.7 125 361-504 249-374 (394)
338 3tlx_A Adenylate kinase 2; str 95.1 0.012 4.1E-07 55.9 3.7 26 4-29 28-53 (243)
339 1gvn_B Zeta; postsegregational 95.1 0.012 4E-07 57.5 3.7 26 4-29 32-57 (287)
340 1a7j_A Phosphoribulokinase; tr 95.1 0.0063 2.2E-07 59.5 1.7 29 1-29 1-29 (290)
341 1rz3_A Hypothetical protein rb 95.1 0.013 4.6E-07 53.7 3.8 26 4-29 21-46 (201)
342 3tqc_A Pantothenate kinase; bi 95.1 0.061 2.1E-06 53.0 8.7 26 4-29 91-116 (321)
343 1xjc_A MOBB protein homolog; s 95.1 0.012 4.1E-07 52.0 3.2 26 4-29 3-28 (169)
344 3gmt_A Adenylate kinase; ssgci 95.1 0.032 1.1E-06 51.9 6.2 24 6-29 9-32 (230)
345 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 53.8 3.1 23 7-29 2-24 (195)
346 1zd8_A GTP:AMP phosphotransfer 95.0 0.011 3.8E-07 55.5 3.1 25 5-29 7-31 (227)
347 3a8t_A Adenylate isopentenyltr 95.0 0.013 4.3E-07 57.9 3.6 24 6-29 41-64 (339)
348 1ls1_A Signal recognition part 95.0 0.056 1.9E-06 52.8 8.3 90 4-96 97-189 (295)
349 3crm_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 57.5 3.8 25 5-29 5-29 (323)
350 2pt5_A Shikimate kinase, SK; a 95.0 0.012 4E-07 52.2 3.1 23 7-29 2-24 (168)
351 1htw_A HI0065; nucleotide-bind 95.0 0.014 4.8E-07 51.1 3.5 24 6-29 34-57 (158)
352 2yvu_A Probable adenylyl-sulfa 95.0 0.015 5.1E-07 52.6 3.9 26 4-29 12-37 (186)
353 3exa_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 56.9 3.6 25 5-29 3-27 (322)
354 3fb4_A Adenylate kinase; psych 95.0 0.012 4E-07 54.8 3.2 23 7-29 2-24 (216)
355 1nn5_A Similar to deoxythymidy 95.0 0.012 4.2E-07 54.5 3.3 25 5-29 9-33 (215)
356 3dl0_A Adenylate kinase; phosp 95.0 0.012 4.2E-07 54.7 3.3 23 7-29 2-24 (216)
357 2wwf_A Thymidilate kinase, put 95.0 0.012 4.1E-07 54.5 3.2 25 5-29 10-34 (212)
358 1znw_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 54.2 3.3 24 6-29 21-44 (207)
359 2grj_A Dephospho-COA kinase; T 95.0 0.014 4.9E-07 52.9 3.6 26 4-29 11-36 (192)
360 3r20_A Cytidylate kinase; stru 95.0 0.013 4.3E-07 54.9 3.2 26 4-29 8-33 (233)
361 2v54_A DTMP kinase, thymidylat 94.9 0.015 5.1E-07 53.4 3.7 25 5-29 4-28 (204)
362 2jeo_A Uridine-cytidine kinase 94.9 0.016 5.4E-07 55.1 3.9 25 5-29 25-49 (245)
363 3d3q_A TRNA delta(2)-isopenten 94.9 0.014 4.7E-07 57.8 3.5 24 6-29 8-31 (340)
364 3l0o_A Transcription terminati 94.9 0.0061 2.1E-07 60.7 0.9 24 6-29 176-199 (427)
365 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.8E-07 55.2 2.8 26 4-29 4-29 (222)
366 2f6r_A COA synthase, bifunctio 94.9 0.016 5.5E-07 56.3 4.0 25 3-27 73-97 (281)
367 3zvl_A Bifunctional polynucleo 94.9 0.063 2.2E-06 55.4 8.6 27 3-29 256-282 (416)
368 3foz_A TRNA delta(2)-isopenten 94.9 0.015 5.1E-07 56.5 3.5 25 5-29 10-34 (316)
369 1aky_A Adenylate kinase; ATP:A 94.9 0.014 4.8E-07 54.4 3.3 25 5-29 4-28 (220)
370 3cmu_A Protein RECA, recombina 94.9 0.034 1.2E-06 67.5 7.2 85 5-97 1427-1515(2050)
371 2z0h_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 53.3 3.2 23 7-29 2-24 (197)
372 1z6g_A Guanylate kinase; struc 94.8 0.012 4.1E-07 54.8 2.7 24 6-29 24-47 (218)
373 4a1f_A DNAB helicase, replicat 94.8 0.059 2E-06 53.4 7.8 47 6-57 47-93 (338)
374 3aez_A Pantothenate kinase; tr 94.8 0.017 5.7E-07 57.0 3.8 41 4-45 89-129 (312)
375 1rj9_A FTSY, signal recognitio 94.7 0.017 6E-07 56.6 3.7 26 4-29 101-126 (304)
376 2j37_W Signal recognition part 94.7 0.094 3.2E-06 55.1 9.4 27 3-29 99-125 (504)
377 1s96_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 53.8 3.2 24 6-29 17-40 (219)
378 1vht_A Dephospho-COA kinase; s 94.6 0.022 7.5E-07 53.0 3.9 23 5-27 4-26 (218)
379 2p5t_B PEZT; postsegregational 94.6 0.014 4.8E-07 55.8 2.6 26 4-29 31-56 (253)
380 1gtv_A TMK, thymidylate kinase 94.6 0.0087 3E-07 55.5 1.1 24 6-29 1-24 (214)
381 2qmh_A HPR kinase/phosphorylas 94.6 0.015 5.2E-07 52.3 2.5 25 5-29 34-58 (205)
382 2pez_A Bifunctional 3'-phospho 94.6 0.021 7.2E-07 51.2 3.5 25 5-29 5-29 (179)
383 3tif_A Uncharacterized ABC tra 94.5 0.032 1.1E-06 52.6 4.7 24 6-29 32-55 (235)
384 3rfe_A Platelet glycoprotein I 94.5 0.064 2.2E-06 45.1 6.2 35 414-448 32-67 (130)
385 3ake_A Cytidylate kinase; CMP 94.5 0.019 6.5E-07 52.9 3.2 23 7-29 4-26 (208)
386 1m7g_A Adenylylsulfate kinase; 94.5 0.023 8E-07 52.5 3.8 25 5-29 25-49 (211)
387 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.1E-07 53.8 3.4 25 5-29 16-40 (233)
388 3lnc_A Guanylate kinase, GMP k 94.4 0.013 4.6E-07 55.1 2.1 24 6-29 28-52 (231)
389 2i3b_A HCR-ntpase, human cance 94.4 0.018 6.1E-07 52.2 2.8 23 7-29 3-25 (189)
390 3bgw_A DNAB-like replicative h 94.4 0.076 2.6E-06 55.1 7.8 38 6-46 198-235 (444)
391 2ehv_A Hypothetical protein PH 94.4 0.021 7.1E-07 54.4 3.2 22 6-27 31-52 (251)
392 2f1r_A Molybdopterin-guanine d 94.4 0.013 4.3E-07 52.2 1.6 25 5-29 2-26 (171)
393 2dr3_A UPF0273 protein PH0284; 94.3 0.024 8.2E-07 53.8 3.6 39 6-47 24-62 (247)
394 2yhs_A FTSY, cell division pro 94.3 0.076 2.6E-06 55.2 7.5 26 4-29 292-317 (503)
395 2onk_A Molybdate/tungstate ABC 94.3 0.024 8E-07 53.6 3.4 24 6-29 25-48 (240)
396 3vr4_D V-type sodium ATPase su 94.3 0.084 2.9E-06 54.0 7.7 53 7-60 153-208 (465)
397 1q57_A DNA primase/helicase; d 94.3 0.13 4.6E-06 54.5 9.7 49 6-58 243-291 (503)
398 1w36_D RECD, exodeoxyribonucle 94.3 0.073 2.5E-06 57.9 7.8 53 5-57 164-216 (608)
399 2xb4_A Adenylate kinase; ATP-b 94.3 0.022 7.5E-07 53.2 3.1 23 7-29 2-24 (223)
400 1e4v_A Adenylate kinase; trans 94.3 0.021 7.3E-07 52.9 3.0 23 7-29 2-24 (214)
401 3be4_A Adenylate kinase; malar 94.3 0.02 6.7E-07 53.3 2.8 24 6-29 6-29 (217)
402 3b9q_A Chloroplast SRP recepto 94.2 0.028 9.7E-07 55.1 3.9 26 4-29 99-124 (302)
403 3nwj_A ATSK2; P loop, shikimat 94.2 0.02 6.8E-07 54.4 2.7 24 6-29 49-72 (250)
404 2f9l_A RAB11B, member RAS onco 94.2 0.028 9.6E-07 51.3 3.7 29 1-29 1-29 (199)
405 3gfo_A Cobalt import ATP-bindi 94.2 0.038 1.3E-06 53.2 4.7 24 6-29 35-58 (275)
406 1np6_A Molybdopterin-guanine d 94.2 0.027 9.4E-07 50.1 3.4 25 5-29 6-30 (174)
407 2r9v_A ATP synthase subunit al 94.2 0.096 3.3E-06 54.3 7.8 83 7-96 177-276 (515)
408 2qe7_A ATP synthase subunit al 94.2 0.094 3.2E-06 54.3 7.7 83 7-96 164-263 (502)
409 1b0u_A Histidine permease; ABC 94.2 0.04 1.4E-06 52.8 4.7 24 6-29 33-56 (262)
410 3gqb_B V-type ATP synthase bet 94.2 0.081 2.8E-06 54.1 7.1 52 7-59 149-210 (464)
411 1sq5_A Pantothenate kinase; P- 94.2 0.028 9.5E-07 55.5 3.7 26 4-29 79-104 (308)
412 3end_A Light-independent proto 94.2 0.033 1.1E-06 55.0 4.3 41 3-46 39-79 (307)
413 1tue_A Replication protein E1; 94.2 0.019 6.6E-07 52.0 2.3 23 7-29 60-82 (212)
414 2pcj_A ABC transporter, lipopr 94.2 0.023 8E-07 53.0 3.0 24 6-29 31-54 (224)
415 4eaq_A DTMP kinase, thymidylat 94.0 0.058 2E-06 50.5 5.5 25 5-29 26-50 (229)
416 3b85_A Phosphate starvation-in 94.0 0.022 7.5E-07 52.5 2.5 23 6-28 23-45 (208)
417 2cbz_A Multidrug resistance-as 94.0 0.027 9.1E-07 53.2 3.1 24 6-29 32-55 (237)
418 3iqw_A Tail-anchored protein t 94.0 0.074 2.5E-06 52.9 6.5 46 4-52 15-60 (334)
419 2r8r_A Sensor protein; KDPD, P 94.0 0.033 1.1E-06 51.4 3.6 37 7-46 8-44 (228)
420 2ff7_A Alpha-hemolysin translo 94.0 0.046 1.6E-06 51.9 4.7 24 6-29 36-59 (247)
421 2olj_A Amino acid ABC transpor 94.0 0.046 1.6E-06 52.4 4.7 24 6-29 51-74 (263)
422 4g1u_C Hemin import ATP-bindin 94.0 0.045 1.5E-06 52.6 4.6 24 6-29 38-61 (266)
423 1sgw_A Putative ABC transporte 94.0 0.04 1.4E-06 50.9 4.1 24 6-29 36-59 (214)
424 3eph_A TRNA isopentenyltransfe 94.0 0.027 9.2E-07 56.9 3.2 25 5-29 2-26 (409)
425 2hf9_A Probable hydrogenase ni 94.0 0.033 1.1E-06 52.1 3.7 26 4-29 37-62 (226)
426 1ji0_A ABC transporter; ATP bi 94.0 0.047 1.6E-06 51.6 4.7 24 6-29 33-56 (240)
427 2pze_A Cystic fibrosis transme 94.0 0.046 1.6E-06 51.2 4.7 24 6-29 35-58 (229)
428 2q6t_A DNAB replication FORK h 94.0 0.15 5.1E-06 53.1 9.0 49 6-58 201-249 (444)
429 1cp2_A CP2, nitrogenase iron p 93.9 0.045 1.5E-06 52.7 4.6 38 6-46 2-39 (269)
430 1g6h_A High-affinity branched- 93.9 0.049 1.7E-06 52.1 4.7 24 6-29 34-57 (257)
431 1ltq_A Polynucleotide kinase; 93.9 0.033 1.1E-06 54.8 3.6 24 6-29 3-26 (301)
432 1fx0_A ATP synthase alpha chai 93.9 0.091 3.1E-06 54.4 6.9 83 7-96 165-264 (507)
433 2r6a_A DNAB helicase, replicat 93.9 0.097 3.3E-06 54.7 7.4 40 6-47 204-243 (454)
434 2ixe_A Antigen peptide transpo 93.8 0.05 1.7E-06 52.4 4.7 24 6-29 46-69 (271)
435 1vpl_A ABC transporter, ATP-bi 93.8 0.051 1.7E-06 51.8 4.7 24 6-29 42-65 (256)
436 1p5z_B DCK, deoxycytidine kina 93.8 0.024 8.3E-07 54.5 2.4 27 3-29 22-48 (263)
437 2lkc_A Translation initiation 93.8 0.043 1.5E-06 48.8 4.0 28 2-29 5-32 (178)
438 3cmu_A Protein RECA, recombina 93.8 0.088 3E-06 63.9 7.6 85 6-98 384-472 (2050)
439 4dzz_A Plasmid partitioning pr 93.7 0.086 3E-06 48.2 6.0 44 6-52 2-46 (206)
440 2og2_A Putative signal recogni 93.7 0.04 1.4E-06 55.2 3.9 26 4-29 156-181 (359)
441 1mv5_A LMRA, multidrug resista 93.7 0.035 1.2E-06 52.6 3.3 24 6-29 29-52 (243)
442 2ihy_A ABC transporter, ATP-bi 93.7 0.054 1.9E-06 52.4 4.7 24 6-29 48-71 (279)
443 2d2e_A SUFC protein; ABC-ATPas 93.7 0.036 1.2E-06 52.8 3.3 23 6-28 30-52 (250)
444 2afh_E Nitrogenase iron protei 93.7 0.045 1.5E-06 53.4 4.1 39 5-46 2-40 (289)
445 2yz2_A Putative ABC transporte 93.6 0.058 2E-06 51.8 4.7 24 6-29 34-57 (266)
446 2zu0_C Probable ATP-dependent 93.6 0.036 1.2E-06 53.3 3.3 23 6-28 47-69 (267)
447 2wsm_A Hydrogenase expression/ 93.6 0.04 1.4E-06 51.2 3.5 26 4-29 29-54 (221)
448 2eyu_A Twitching motility prot 93.6 0.041 1.4E-06 52.7 3.6 24 6-29 26-49 (261)
449 3io3_A DEHA2D07832P; chaperone 93.6 0.078 2.7E-06 53.0 5.7 47 4-51 17-63 (348)
450 1oix_A RAS-related protein RAB 93.6 0.038 1.3E-06 50.1 3.2 24 6-29 30-53 (191)
451 2dyk_A GTP-binding protein; GT 93.5 0.047 1.6E-06 47.5 3.7 24 6-29 2-25 (161)
452 2ghi_A Transport protein; mult 93.5 0.038 1.3E-06 52.9 3.1 24 6-29 47-70 (260)
453 2qi9_C Vitamin B12 import ATP- 93.5 0.039 1.3E-06 52.4 3.1 24 6-29 27-50 (249)
454 3e1s_A Exodeoxyribonuclease V, 93.4 0.068 2.3E-06 57.5 5.4 25 5-29 204-228 (574)
455 3cmw_A Protein RECA, recombina 93.4 0.088 3E-06 63.1 6.7 83 6-96 384-470 (1706)
456 2c61_A A-type ATP synthase non 93.3 0.11 3.6E-06 53.6 6.4 53 7-60 154-209 (469)
457 1q3t_A Cytidylate kinase; nucl 93.3 0.045 1.6E-06 51.6 3.5 25 5-29 16-40 (236)
458 2v9p_A Replication protein E1; 93.3 0.041 1.4E-06 53.7 3.2 24 6-29 127-150 (305)
459 3hjn_A DTMP kinase, thymidylat 93.3 0.13 4.4E-06 46.8 6.4 23 7-29 2-24 (197)
460 2nq2_C Hypothetical ABC transp 93.3 0.041 1.4E-06 52.4 3.1 24 6-29 32-55 (253)
461 2zej_A Dardarin, leucine-rich 93.3 0.04 1.4E-06 49.6 2.9 22 7-28 4-25 (184)
462 3hws_A ATP-dependent CLP prote 93.3 0.042 1.4E-06 55.7 3.3 25 5-29 51-75 (363)
463 2wji_A Ferrous iron transport 93.3 0.051 1.7E-06 47.8 3.5 24 6-29 4-27 (165)
464 2ck3_A ATP synthase subunit al 93.3 0.14 4.9E-06 53.1 7.2 87 7-96 164-271 (510)
465 2orw_A Thymidine kinase; TMTK, 93.3 0.043 1.5E-06 49.4 3.0 24 6-29 4-27 (184)
466 3j16_B RLI1P; ribosome recycli 93.2 0.28 9.4E-06 53.0 9.7 24 6-29 104-127 (608)
467 1yrb_A ATP(GTP)binding protein 93.2 0.071 2.4E-06 51.0 4.7 25 5-29 14-38 (262)
468 2ocp_A DGK, deoxyguanosine kin 93.2 0.05 1.7E-06 51.5 3.5 25 5-29 2-26 (241)
469 2ga8_A Hypothetical 39.9 kDa p 93.2 0.058 2E-06 53.5 4.0 27 3-29 22-48 (359)
470 1cr0_A DNA primase/helicase; R 93.2 0.044 1.5E-06 53.7 3.2 39 6-46 36-74 (296)
471 4edh_A DTMP kinase, thymidylat 93.2 0.14 4.7E-06 47.2 6.4 32 6-39 7-38 (213)
472 3nh6_A ATP-binding cassette SU 93.1 0.055 1.9E-06 53.0 3.8 24 6-29 81-104 (306)
473 1um8_A ATP-dependent CLP prote 93.1 0.046 1.6E-06 55.7 3.3 25 5-29 72-96 (376)
474 4hlc_A DTMP kinase, thymidylat 93.1 0.14 4.9E-06 46.8 6.3 31 6-39 3-33 (205)
475 3lv8_A DTMP kinase, thymidylat 93.0 0.1 3.4E-06 49.0 5.2 35 6-42 28-62 (236)
476 3kjh_A CO dehydrogenase/acetyl 92.9 0.084 2.9E-06 50.1 4.7 40 8-50 3-42 (254)
477 2pjz_A Hypothetical protein ST 92.9 0.053 1.8E-06 51.9 3.1 23 6-28 31-53 (263)
478 3p32_A Probable GTPase RV1496/ 92.8 0.097 3.3E-06 52.7 5.2 27 3-29 77-103 (355)
479 3llm_A ATP-dependent RNA helic 92.8 0.35 1.2E-05 45.3 8.8 93 6-99 77-188 (235)
480 3fvq_A Fe(3+) IONS import ATP- 92.8 0.054 1.9E-06 54.1 3.2 24 6-29 31-54 (359)
481 3cwq_A Para family chromosome 92.8 0.13 4.3E-06 47.4 5.6 41 7-51 2-43 (209)
482 1svm_A Large T antigen; AAA+ f 92.8 0.062 2.1E-06 54.3 3.7 25 5-29 169-193 (377)
483 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.051 1.8E-06 57.2 3.1 24 6-29 42-65 (500)
484 3fdi_A Uncharacterized protein 92.8 0.073 2.5E-06 48.7 3.8 24 6-29 7-30 (201)
485 2vp4_A Deoxynucleoside kinase; 92.7 0.054 1.8E-06 50.8 2.9 24 5-28 20-43 (230)
486 4tmk_A Protein (thymidylate ki 92.7 0.13 4.3E-06 47.5 5.4 24 6-29 4-27 (213)
487 2axn_A 6-phosphofructo-2-kinas 92.7 0.062 2.1E-06 57.1 3.7 27 3-29 33-59 (520)
488 3kta_A Chromosome segregation 92.7 0.064 2.2E-06 48.1 3.3 24 6-29 27-50 (182)
489 2v3c_C SRP54, signal recogniti 92.6 0.04 1.4E-06 56.9 2.1 26 4-29 98-123 (432)
490 3fkq_A NTRC-like two-domain pr 92.6 0.082 2.8E-06 53.7 4.4 45 3-50 141-186 (373)
491 3sop_A Neuronal-specific septi 92.6 0.061 2.1E-06 51.8 3.2 23 7-29 4-26 (270)
492 3hdt_A Putative kinase; struct 92.6 0.073 2.5E-06 49.5 3.6 26 4-29 13-38 (223)
493 2zts_A Putative uncharacterize 92.6 0.049 1.7E-06 51.7 2.5 39 6-46 31-69 (251)
494 2bbs_A Cystic fibrosis transme 92.5 0.058 2E-06 52.4 3.0 24 6-29 65-88 (290)
495 3oaa_A ATP synthase subunit al 92.5 0.55 1.9E-05 48.5 10.2 83 7-96 164-263 (513)
496 2wjg_A FEOB, ferrous iron tran 92.5 0.076 2.6E-06 47.7 3.6 23 6-28 8-30 (188)
497 1svi_A GTP-binding protein YSX 92.5 0.076 2.6E-06 48.0 3.6 25 4-28 22-46 (195)
498 1nrj_B SR-beta, signal recogni 92.5 0.077 2.6E-06 49.1 3.7 27 3-29 10-36 (218)
499 2qu8_A Putative nucleolar GTP- 92.4 0.09 3.1E-06 49.1 4.1 28 2-29 26-53 (228)
500 2r44_A Uncharacterized protein 92.4 0.048 1.6E-06 54.4 2.2 23 7-29 48-70 (331)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-40 Score=359.12 Aligned_cols=294 Identities=14% Similarity=0.147 Sum_probs=229.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh--cccCCCCCCceEEEEEeCChh--hHHHHHHHHHHHhCCCCC-----CCCcccH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINN--KFFDTPNDFDLVIWVVVSKDL--QLKRIQDCIARKIGLFSR-----SWNSKSL 73 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-----~~~~~~~ 73 (656)
.++++|+|+||||+||||||+++|+ +. .+..+|+.++|+++++.. +...++..|+.+++.... .....+.
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccH
Confidence 3589999999999999999999998 44 568899999999998875 888999999999976422 1122345
Q ss_pred HHHHHHHHHhhCCc-cEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccC-CcceEeeccCChhhhHHH
Q 037310 74 LEKAEDIFKVMKRK-KFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQME-AHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 74 ~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~-~~~~~~l~~l~~~ea~~L 151 (656)
.+....+.+.+.++ |+||||||||+..++ . ++. . +||+||||||++.++..++ ....|+|++|+.++|++|
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~~-~-~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WAQ-E-LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDF 301 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HHH-H-TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----ccc-c-CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHH
Confidence 66788899999996 999999999987654 2 221 1 7899999999999988775 446799999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccCCchHHHHHHHHhcccc
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKFSSLAKKLYSSLKLSYD 231 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~ 231 (656)
|.++++... ..++..+.+.+|+++|+|+||||+++|+.++.+ .|+.. +.+....+... ...+..++.+||+
T Consensus 302 f~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~ 372 (549)
T 2a5y_B 302 LEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLESRG--LVGVECITPYSYK 372 (549)
T ss_dssp HHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHHHHC--SSTTCCCSSSSSS
T ss_pred HHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhhccc--HHHHHHHHhcccc
Confidence 999987653 235677889999999999999999999998753 24432 33333221111 1257778899999
Q ss_pred cCCCCCchhHHH-----------hhccCCCCceechhHHHHHHHHh--CccccCC-CccHHHhHHHHHHHHHHccccccc
Q 037310 232 FLPDDASRFCLL-----------YCSLFPEDYRISIEDLIDCWICE--GLLDEYD-GIRARNQGYSLICTLLHACLLEKE 297 (656)
Q Consensus 232 ~L~~~~~k~~~~-----------~~~~f~~~~~~~~~~l~~~w~~~--~~~~~~~-~~~~~~~~~~~l~~L~~~~Ll~~~ 297 (656)
.|++ ..+.||+ +|++||+++.++ +..|+++ |++.... +...++.++ ++.+|+++||++..
T Consensus 373 ~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 373 SLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSG 446 (549)
T ss_dssp SHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEE
T ss_pred cccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEe
Confidence 9998 8999999 999999999999 7899999 8887765 334555555 99999999999985
Q ss_pred ---ccCcEEecHHHHHHHHHHHccc
Q 037310 298 ---EENCVKMHDVIRDMALWIASTI 319 (656)
Q Consensus 298 ---~~~~~~~h~li~~~~~~~~~~~ 319 (656)
...+|.|||++|+||++++.++
T Consensus 447 ~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 447 KRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp ECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred cCCCceEEEeChHHHHHHHHHHHHH
Confidence 3357999999999999876544
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-33 Score=335.21 Aligned_cols=292 Identities=21% Similarity=0.327 Sum_probs=234.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcccCCCC-CCceEEEEEeCCh--hhHHHHHHHHHHHhCCCCC--CCCcccHHHH
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKFFDTPN-DFDLVIWVVVSKD--LQLKRIQDCIARKIGLFSR--SWNSKSLLEK 76 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~-~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~ 76 (656)
++++++|+|+||||+||||||++++++...... +++.++|++++.. .........++..+..... .......++.
T Consensus 144 ~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 223 (1249)
T 3sfz_A 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223 (1249)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHH
Confidence 357899999999999999999999998522234 4578999999874 4455556777777765332 2334577888
Q ss_pred HHHHHHhhCCc--cEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcc-cCCcceEeecc-CChhhhHHHH
Q 037310 77 AEDIFKVMKRK--KFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQ-MEAHKSFEVEC-LGYDDSWKLF 152 (656)
Q Consensus 77 ~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~-~~~~~~~~l~~-l~~~ea~~L~ 152 (656)
...++..+.++ |+||||||||+..++..+ . +|++||||||++.++.. ......+.+++ |+++||++||
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~-~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------D-NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------C-SSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------c-CCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 88899999877 999999999987766553 3 78999999999998854 45667889985 9999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCcccC-----CchHHHHHHHHh
Q 037310 153 EVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFKF-----SSLAKKLYSSLK 227 (656)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~l~ 227 (656)
.+.++... ++..+.+++|+++|+|+||||.++|++|+... ..|+.+++.+....... ....+.+..++.
T Consensus 296 ~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 369 (1249)
T 3sfz_A 296 SLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMS 369 (1249)
T ss_dssp HHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHH
T ss_pred HHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHH
Confidence 99886443 33445689999999999999999999998643 57999998887654321 122358999999
Q ss_pred cccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccccccC---cEEe
Q 037310 228 LSYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKEEEN---CVKM 304 (656)
Q Consensus 228 ~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~---~~~~ 304 (656)
+||+.|++ +.|.||++|++||+++.++...++.+|.++ .+.++.++.+|++++|++....+ +|+|
T Consensus 370 ~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~ 437 (1249)
T 3sfz_A 370 ISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYL 437 (1249)
T ss_dssp HHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEESSSSEEEEC
T ss_pred HHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecCCCceEEEe
Confidence 99999999 899999999999999999999999999642 46678899999999999986444 4999
Q ss_pred cHHHHHHHHHHHccc
Q 037310 305 HDVIRDMALWIASTI 319 (656)
Q Consensus 305 h~li~~~~~~~~~~~ 319 (656)
|+++|+|+++...++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhhhhHH
Confidence 999999999886544
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.2e-34 Score=315.61 Aligned_cols=267 Identities=15% Similarity=0.192 Sum_probs=209.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCce-EEEEEeCChhhHHHHHHHHHHHhCCCC---CC------CCccc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDL-VIWVVVSKDLQLKRIQDCIARKIGLFS---RS------WNSKS 72 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~------~~~~~ 72 (656)
+.+++|+|+||||+||||||++++++. ++..+|+. ++|+++++..+...+...+++.++... .. ..+.+
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~ 226 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCC
Confidence 357899999999999999999999875 55678885 999999998888787777777543211 00 01123
Q ss_pred HHHHHHHHHHhh---CCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEeec------cC
Q 037310 73 LLEKAEDIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEVE------CL 143 (656)
Q Consensus 73 ~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l~------~l 143 (656)
.++....++..+ .++|+||||||||+...|+.+ . +|++||||||++.++..+.....|+++ +|
T Consensus 227 leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~-pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------N-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------H-SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCC
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------C-CCeEEEEeccChHHHHhcCCCeEEEecCccccCCc
Confidence 445566666655 789999999999997777654 1 679999999999987654444467777 99
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCC-ChhHHHHHHHHHhcCcccCCchHHHH
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKK-TPREWEHAIEVLSSSAFKFSSLAKKL 222 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (656)
+.+||++||.+.++.. ..+. ..+ .|+|+|+||.++|++|++.. ..+.|+.. ..+.+
T Consensus 299 S~eEA~eLF~~~~g~~----~eeL---~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I 355 (1221)
T 1vt4_I 299 TPDEVKSLLLKYLDCR----PQDL---PRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKL 355 (1221)
T ss_dssp CHHHHHHHHHHHHCCC----TTTH---HHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHH
T ss_pred CHHHHHHHHHHHcCCC----HHHH---HHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHH
Confidence 9999999999985432 1222 333 39999999999999998753 56677642 12489
Q ss_pred HHHHhcccccCCCCCc-hhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHccccccc-ccC
Q 037310 223 YSSLKLSYDFLPDDAS-RFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKE-EEN 300 (656)
Q Consensus 223 ~~~l~~s~~~L~~~~~-k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~-~~~ 300 (656)
..++.+||+.|++ +. |.||++|++||+++.++...++.+|++++ .+.++.++.+|+++||++.. ...
T Consensus 356 ~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~~ 424 (1221)
T 1vt4_I 356 TTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKES 424 (1221)
T ss_dssp HHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSSS
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCCC
Confidence 9999999999999 78 99999999999999999999999998765 13577899999999999985 467
Q ss_pred cEEecHHHHHHH
Q 037310 301 CVKMHDVIRDMA 312 (656)
Q Consensus 301 ~~~~h~li~~~~ 312 (656)
+|+||+++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=289.42 Aligned_cols=286 Identities=21% Similarity=0.324 Sum_probs=217.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCC-CCCC-ceEEEEEeCChhh--HHHHHHHHHHHhCCC--CCCCCcccHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDT-PNDF-DLVIWVVVSKDLQ--LKRIQDCIARKIGLF--SRSWNSKSLLEK 76 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~--~~~~~~~~~~~~ 76 (656)
++.++|+|+|+||+||||||.+++++. .. ..+| +.++|++++.... .......++..++.. .......+.+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 223 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEA 223 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHH
Confidence 468899999999999999999999875 33 5678 5899999876522 222233344455421 112234566677
Q ss_pred HHHHHHhhCC--ccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhcccCCcceEee---ccCChhhhHHH
Q 037310 77 AEDIFKVMKR--KKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGGQMEAHKSFEV---ECLGYDDSWKL 151 (656)
Q Consensus 77 ~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~~~~~~~l---~~l~~~ea~~L 151 (656)
...+...+.+ +++||||||+|+...++.+ . ++++||||||++.++..+. ...+++ ++|+.+||+++
T Consensus 224 ~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~-~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 224 KDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------D-SQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------C-SSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------c-CCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHH
Confidence 7778877765 7999999999886655432 2 7899999999998876543 334555 58999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHHHHHHHHHhcCccc-----CCchHHHHHHHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREWEHAIEVLSSSAFK-----FSSLAKKLYSSL 226 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~l 226 (656)
|.+.++... . ...+.+.+|++.|+|+|+||.++|++++.. ...|..+++.+...... ......++..++
T Consensus 295 ~~~~~~~~~-~---~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 368 (591)
T 1z6t_A 295 LSLFVNMKK-A---DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 368 (591)
T ss_dssp HHHHHTSCG-G---GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHH
T ss_pred HHHHhCCCc-c---cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHH
Confidence 999987532 1 123458999999999999999999999864 34799888888765321 122235899999
Q ss_pred hcccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccccc---cCcEE
Q 037310 227 KLSYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEKEE---ENCVK 303 (656)
Q Consensus 227 ~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~---~~~~~ 303 (656)
..||+.|++ ..+.||+++|+||+++.++...+...|..+ .+.+...+.+|++++|+.... ...|.
T Consensus 369 ~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~ 436 (591)
T 1z6t_A 369 SISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNGKSFRYY 436 (591)
T ss_dssp HHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEETTEEEEE
T ss_pred HHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCCCccEEE
Confidence 999999999 899999999999999999999888888632 245678899999999998642 34799
Q ss_pred ecHHHHHHHHHHH
Q 037310 304 MHDVIRDMALWIA 316 (656)
Q Consensus 304 ~h~li~~~~~~~~ 316 (656)
||+++++|+++..
T Consensus 437 ~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 437 LHDLQVDFLTEKN 449 (591)
T ss_dssp CCHHHHHHHHHHT
T ss_pred EcHHHHHHHHhhh
Confidence 9999999999773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=5.7e-21 Score=196.65 Aligned_cols=279 Identities=17% Similarity=0.187 Sum_probs=150.6
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccC
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHL 405 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 405 (656)
+.+.+.....++....+++++.|+++++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|. ...+
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~-i~~~ 125 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDN-ISDI 125 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSC-CCCC
T ss_pred EEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCc-ccCc
Confidence 34444445555555555666666666666665555666666666666666655543 25566666666666663 3333
Q ss_pred ccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcc-----
Q 037310 406 LTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI----- 480 (656)
Q Consensus 406 p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----- 480 (656)
+. +..+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++|..........
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLH 202 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccc
Confidence 32 555666666666665333333335555555555555555555544 4555555555555554211000000
Q ss_pred ----ccc-CccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHh
Q 037310 481 ----LIG-GREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CIS 554 (656)
Q Consensus 481 ----~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~ 554 (656)
... .... ..+..+++|+.|+++++....... ......+ +.|++++|....+ ..+..+++|+.| +++
T Consensus 203 ~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L-~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 203 YFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP----LANLSQL-TWLEIGTNQISDI-NAVKDLTKLKMLNVGS 274 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG----GTTCTTC-CEEECCSSCCCCC-GGGTTCTTCCEEECCS
T ss_pred eeecccCCCCCC--chhhcCCcCCEEEccCCccCCCcc----hhcCCCC-CEEECCCCccCCC-hhHhcCCCcCEEEccC
Confidence 000 0111 115566677777776664433222 2222335 6777777665543 235556677777 766
Q ss_pred CCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 555 YSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 555 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
| .+..++.+..+++|++|++++|...... |..++.+++|++|++++|+ +..++. ...+++|+.|
T Consensus 275 n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 275 N-QISDISVLNNLSQLNSLFLNNNQLGNED-------------MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSA 338 (347)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSCCCGGG-------------HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEE
T ss_pred C-ccCCChhhcCCCCCCEEECcCCcCCCcC-------------hhHhhccccCCEEEccCCc-cccccC-hhhhhcccee
Confidence 5 4444566677777777777777643322 1356678888888888876 333332 3345555543
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=201.92 Aligned_cols=280 Identities=20% Similarity=0.141 Sum_probs=186.1
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|.. ...+++.|+++++.+..++ .+.++++|++|++++|.++.+.+..|..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3455666667777763 3468999999999988874 578899999999999999998888899999999999999955
Q ss_pred CccCccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcc
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI 480 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 480 (656)
....+..++++++|++|++++|.+..+ |..+.++++|++|++++|.+..+++..+..+++|++|++++|..
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------- 164 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-------- 164 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC--------
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC--------
Confidence 444444678999999999999998876 44688999999999999988888776688999999999999983
Q ss_pred cccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCC
Q 037310 481 LIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKL 558 (656)
Q Consensus 481 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~ 558 (656)
.......+.++++|+.|++..+....... ........+ +.|++++|.... ++.......+|+.| ++++...
T Consensus 165 ----~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 165 ----TSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRL-KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp ----SSCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTC-CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ----cccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCccc-ceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 44445667888888888888765432211 122223345 666776665544 32223333355555 5554322
Q ss_pred CCcc-ccccCCCccEEEEeCCchhhHHhccc------------ccCCcCcccccCcccccccccccccCCcchhhh
Q 037310 559 KHLT-WLIVAPNLKHVRISSCLDLEEIISVE------------KLGEVSPEVMHNLIPLARIEYLILEDLKNLKSI 621 (656)
Q Consensus 559 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 621 (656)
..+. .+..+++|++|+|++|.. ..+.... ....+..+.|..+..+++|+.|+++++ .+..+
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCC-CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCC
T ss_pred ccCHHHhcCccccCeeECCCCcC-CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCcee
Confidence 2221 344555666666655542 2111100 000111122345667777777777774 34444
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.7e-20 Score=193.10 Aligned_cols=258 Identities=17% Similarity=0.169 Sum_probs=174.9
Q ss_pred CCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 338 GIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 338 ~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
....+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|. ...+| .++.+++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCE
Confidence 344567899999999999999888999999999999999998876 8999999999999994 44455 6999999999
Q ss_pred EeCCCCCCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCC
Q 037310 418 LDPARSKIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQ 496 (656)
Q Consensus 418 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 496 (656)
|++++|.+..+|. +..+++|++|++++| ....++. +..+++|++|++++|.... .. .+..++
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~------------~~--~~~~l~ 177 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD------------VT--PIANLT 177 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC------------CG--GGGGCT
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC------------ch--hhccCC
Confidence 9999999999887 899999999999999 5555554 8999999999999998421 11 155666
Q ss_pred CCcEEEEEecchhhhHhhhcC------------------cccccccCCceeecccccceEEEeccccccHHHH-HHhCCC
Q 037310 497 HLNVLTVTLESFCALRMLLDS------------------PRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSK 557 (656)
Q Consensus 497 ~L~~L~l~~~~~~~~~~l~~~------------------~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~ 557 (656)
+|+.|+++++.......+... ......+ +.|++++|....+.. +..+++|+.| ++++ .
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L-~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~ 254 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRL-NSLKIGNNKITDLSP-LANLSQLTWLEIGTN-Q 254 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTC-CEEECCSSCCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred CCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcC-CEEEccCCccCCCcc-hhcCCCCCEEECCCC-c
Confidence 677776665543322221110 1111223 555555554443322 4444555555 5543 3
Q ss_pred CCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 558 LKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
+..++.+..+++|++|++++|.. ..+ ..+..+++|+.|.+++|.-....+.....+++|+.|
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l-~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQI-SDI--------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCC-CCC--------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCChhHhcCCCcCEEEccCCcc-CCC--------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 33344455556666666665542 211 246677888888888765433333223344555543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-21 Score=194.16 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=186.6
Q ss_pred cceeEeecchhhHhh---hc-cCCCCCCcceEeccc-cCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 343 KEVTRMSLMQIRIRR---LL-ESSSSPHLQTLFLGS-NDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
.+++.|+++++.+.. ++ .+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+...+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889999888764 44 568889999999995 7787666666889999999999998776688888999999999
Q ss_pred EeCCCCCCc-ccCccccCCCCCCeEecCCcccc-ccChhhhcCCC-CCcEEEeeecCCCCcCCCcccccCccccHHHhhc
Q 037310 418 LDPARSKIR-RLPMELKYLVHLKRLNLEFTRLT-RIPQEVISNLK-MLRVLRMYECGSDKQEGDSILIGGREVLVVEILS 494 (656)
Q Consensus 418 L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (656)
|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..++ +|++|++++|. ..+..+..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~------------l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR------------LTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE------------EEEECCGGGGG
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCe------------eeccCChHHhC
Confidence 999999888 67888999999999999999887 66766 78887 89999999888 34556667777
Q ss_pred CCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCC-CCccccccCCCccE
Q 037310 495 LQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKL-KHLTWLIVAPNLKH 572 (656)
Q Consensus 495 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~-~~~~~l~~l~~L~~ 572 (656)
++ |+.|+++.+..... .+........+ +.|++++|......+.+..+++|+.| ++++... ..+.++..+++|++
T Consensus 197 l~-L~~L~Ls~N~l~~~--~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGD--ASVLFGSDKNT-QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp CC-CSEEECCSSEEEEC--CGGGCCTTSCC-SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred Cc-ccEEECcCCcccCc--CCHHHhcCCCC-CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 76 89998887754321 22223334446 88888888776544445666788888 8776554 33446778888888
Q ss_pred EEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhh
Q 037310 573 VRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSI 621 (656)
Q Consensus 573 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 621 (656)
|++++|.....+ | ..+.+++|+.+.+.+++.+...
T Consensus 273 L~Ls~N~l~~~i-------------p-~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 273 LNVSFNNLCGEI-------------P-QGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCSSEEEEEC-------------C-CSTTGGGSCGGGTCSSSEEEST
T ss_pred EECcCCcccccC-------------C-CCccccccChHHhcCCCCccCC
Confidence 888888754333 2 3367888888888887766543
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-20 Score=197.02 Aligned_cols=214 Identities=16% Similarity=0.170 Sum_probs=162.8
Q ss_pred CcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 340 GLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
..+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..+..+++|++|++++|.+....|..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 456789999999999888875 578999999999999999998878999999999999999766666777899999999
Q ss_pred EeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCC
Q 037310 418 LDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQ 496 (656)
Q Consensus 418 L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 496 (656)
|++++|.+..+|.. +.++++|++|++++|.+..+++..++.+++|++|++++|.. ... .+..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------~~~---~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------------THV---DLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC------------SBC---CGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC------------Ccc---cccccc
Confidence 99999999999987 58999999999999999988877689999999999999983 221 255667
Q ss_pred CCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEE
Q 037310 497 HLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRI 575 (656)
Q Consensus 497 ~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l 575 (656)
+|+.|+++.+....+ .....+ +.|++++|....++. ..+++|+.| +.++ .+..++++..+++|++|++
T Consensus 187 ~L~~L~l~~n~l~~~-------~~~~~L-~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-------AIPIAV-EELDASHNSINVVRG--PVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDL 255 (390)
T ss_dssp TCSEEECCSSCCSEE-------ECCSSC-SEEECCSSCCCEEEC--CCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEEC
T ss_pred ccceeeccccccccc-------CCCCcc-eEEECCCCeeeeccc--cccccccEEECCCC-CCcccHHHcCCCCccEEEC
Confidence 788888876643221 112234 677777766655432 223466666 6554 3334455666666666666
Q ss_pred eCCc
Q 037310 576 SSCL 579 (656)
Q Consensus 576 ~~~~ 579 (656)
++|.
T Consensus 256 s~n~ 259 (390)
T 3o6n_A 256 SYNE 259 (390)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6665
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.6e-20 Score=191.03 Aligned_cols=219 Identities=22% Similarity=0.282 Sum_probs=158.0
Q ss_pred CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEe
Q 037310 363 SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLN 442 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 442 (656)
...+++.|++++|.++.+++. +..+++|++|++++|.+. .+|..++++++|++|++++|.+..+|..+.++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 467888899999988877765 666889999999988554 788888899999999999998888888888999999999
Q ss_pred cCCc-cccccChhhhc---------CCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhH
Q 037310 443 LEFT-RLTRIPQEVIS---------NLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALR 512 (656)
Q Consensus 443 l~~~-~~~~l~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 512 (656)
+++| ....+|.. +. ++++|++|++++|.. . ..+..++++++|+.|+++++....
T Consensus 157 L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l------------~-~lp~~l~~l~~L~~L~L~~N~l~~-- 220 (328)
T 4fcg_A 157 IRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI------------R-SLPASIANLQNLKSLKIRNSPLSA-- 220 (328)
T ss_dssp EEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC------------C-CCCGGGGGCTTCCEEEEESSCCCC--
T ss_pred CCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCc------------C-cchHhhcCCCCCCEEEccCCCCCc--
Confidence 9887 55667765 44 388899999998873 2 455668888888999888776432
Q ss_pred hhhcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCcc-ccccCCCccEEEEeCCchhhHHhcccc
Q 037310 513 MLLDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHLT-WLIVAPNLKHVRISSCLDLEEIISVEK 589 (656)
Q Consensus 513 ~l~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~ 589 (656)
++........+ +.|++++|.... ++..+..+++|+.| +++|.....++ .+..+++|++|+|++|...+.+
T Consensus 221 -l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i----- 293 (328)
T 4fcg_A 221 -LGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL----- 293 (328)
T ss_dssp -CCGGGGGCTTC-CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-----
T ss_pred -CchhhccCCCC-CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-----
Confidence 22223333445 777787776655 34445566677777 76666555544 5667777777777777665554
Q ss_pred cCCcCcccccCcccccccccccccC
Q 037310 590 LGEVSPEVMHNLIPLARIEYLILED 614 (656)
Q Consensus 590 ~~~~~~~~~~~~~~~~~L~~L~l~~ 614 (656)
|..++.+++|+.+.+..
T Consensus 294 --------P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 294 --------PSLIAQLPANCIILVPP 310 (328)
T ss_dssp --------CGGGGGSCTTCEEECCG
T ss_pred --------cHHHhhccCceEEeCCH
Confidence 33566666666666553
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1e-20 Score=192.58 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=182.7
Q ss_pred cCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEE
Q 037310 387 FMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLR 466 (656)
Q Consensus 387 ~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~ 466 (656)
...+++.|++++|. ...+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEE
Confidence 46889999999994 55889899999999999999999999999999999999999999999999987 99999999999
Q ss_pred eeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccc
Q 037310 467 MYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRS 546 (656)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~ 546 (656)
+++|......+..+.. ......+..+++|+.|+++++... .++........+ +.|++++|....++..+..++
T Consensus 157 L~~n~~~~~~p~~~~~---~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L-~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 157 IRACPELTELPEPLAS---TDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNL-KSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp EEEETTCCCCCSCSEE---EC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTC-CEEEEESSCCCCCCGGGGGCT
T ss_pred CCCCCCccccChhHhh---ccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCC-CEEEccCCCCCcCchhhccCC
Confidence 9999853322211110 001122456999999999998654 344434445567 999999999888777778888
Q ss_pred cHHHH-HHhCCCCCCcc-ccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCC
Q 037310 547 LLQNI-CISYSKLKHLT-WLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSS 624 (656)
Q Consensus 547 ~L~~L-l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 624 (656)
+|+.| +++|.....++ .+..+++|++|+|++|.....+ |..++.+++|+.|++++|+.++.+|..
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-------------p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-------------PLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC-------------CTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc-------------chhhhcCCCCCEEeCCCCCchhhccHH
Confidence 99999 99987776655 6889999999999999876655 447889999999999999999999887
Q ss_pred CCCCCChhHH
Q 037310 625 ALPFPHLQSL 634 (656)
Q Consensus 625 ~~~~~~L~~L 634 (656)
...+++|+.+
T Consensus 297 l~~L~~L~~l 306 (328)
T 4fcg_A 297 IAQLPANCII 306 (328)
T ss_dssp GGGSCTTCEE
T ss_pred HhhccCceEE
Confidence 7777776644
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=200.60 Aligned_cols=267 Identities=19% Similarity=0.146 Sum_probs=187.9
Q ss_pred cEEEEcCCCCCCCC--CCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAP--GIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+.+.+..+..++ ....+.+++.|+++++.+..+. .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 45566666666553 3567789999999999888763 5688999999999999999998888899999999999999
Q ss_pred CCCccCccccCCcccCcEEeCCCCCCcccC-ccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCC
Q 037310 400 SLPGHLLTGISNLVSLQHLDPARSKIRRLP-MELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGD 478 (656)
Q Consensus 400 ~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (656)
.+....|..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++...+..+++|++|++++|..
T Consensus 115 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i------ 188 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI------ 188 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC------
T ss_pred ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC------
Confidence 777777888999999999999999988764 4688999999999999999999987789999999999999884
Q ss_pred cccccCccccHHHhhcCCCCcEEEEEecchhh---------------------hHhhh-cCcccccccCCceeecccccc
Q 037310 479 SILIGGREVLVVEILSLQHLNVLTVTLESFCA---------------------LRMLL-DSPRLQSLSTPSLCLKHCCQS 536 (656)
Q Consensus 479 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------------------~~~l~-~~~~~~~~ll~~L~l~~~~~~ 536 (656)
.......+..+++|+.|+++.+.... +..++ ........+ +.|++++|...
T Consensus 189 ------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~ 261 (477)
T 2id5_A 189 ------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-RFLNLSYNPIS 261 (477)
T ss_dssp ------CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-CEEECCSSCCC
T ss_pred ------cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-CeeECCCCcCC
Confidence 22233345556666666666443100 00000 001112234 56666666555
Q ss_pred eEEE-eccccccHHHH-HHhCCCCCC-ccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCccccccccccccc
Q 037310 537 ELLV-FNQRRSLLQNI-CISYSKLKH-LTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILE 613 (656)
Q Consensus 537 ~~~~-~~~~~~~L~~L-l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 613 (656)
.+.. .+..+++|+.| +.++..... +..+..+++|++|+|++|.. ..++ +..+..+++|+.|.+.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~------------~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLE------------ESVFHSVGNLETLILD 328 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCC------------GGGBSCGGGCCEEECC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeC------------HhHcCCCcccCEEEcc
Confidence 4332 23445566666 655433222 22455677777777777652 2222 2357789999999999
Q ss_pred CCc
Q 037310 614 DLK 616 (656)
Q Consensus 614 ~~~ 616 (656)
+++
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=6.3e-20 Score=203.83 Aligned_cols=170 Identities=21% Similarity=0.149 Sum_probs=140.6
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.+...+|.. ....++.|+++++.++.++ .+.++++|++|++++|.+..+.+..|..+++|++|++++|.+
T Consensus 15 ~~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 3556677777777763 3458999999999998874 578999999999999999999888899999999999999977
Q ss_pred CccCccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcc
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI 480 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 480 (656)
....|..++.+++|++|++++|.+..+ |..+.++++|++|++++|.+..++...+..+++|++|++++|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------- 165 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-------- 165 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC--------
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc--------
Confidence 777788999999999999999999987 56689999999999999988887422266699999999999983
Q ss_pred cccCccccHHHhhcCCCCc--EEEEEec
Q 037310 481 LIGGREVLVVEILSLQHLN--VLTVTLE 506 (656)
Q Consensus 481 ~~~~~~~~~~~l~~l~~L~--~L~l~~~ 506 (656)
....+..++.+++|+ .|+++.+
T Consensus 166 ----~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 166 ----HYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ----CEECHHHHHTTTTCCSEEEECTTC
T ss_pred ----cccChhhhhhhcccceeEEecCCC
Confidence 455566777777777 5555544
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.1e-21 Score=193.59 Aligned_cols=241 Identities=15% Similarity=0.085 Sum_probs=193.3
Q ss_pred CCcceEeccccCCcc--cchhHHhcCCcccEEEccC-CCCCccCccccCCcccCcEEeCCCCCCc-ccCccccCCCCCCe
Q 037310 365 PHLQTLFLGSNDLNE--VNRDFFQFMASLRVLTLSD-GSLPGHLLTGISNLVSLQHLDPARSKIR-RLPMELKYLVHLKR 440 (656)
Q Consensus 365 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~L~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 440 (656)
.+++.|+++++.+++ ..+..+..+++|++|++++ |.+...+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999987 5556699999999999995 7677789999999999999999999998 78889999999999
Q ss_pred EecCCcccc-ccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCC-CCcEEEEEecchhhhHhhhcCc
Q 037310 441 LNLEFTRLT-RIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQ-HLNVLTVTLESFCALRMLLDSP 518 (656)
Q Consensus 441 L~l~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~~ 518 (656)
|++++|.+. .+|.. ++.+++|++|++++|. ..+..+..+..++ +|+.|+++.+.... ..+...
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~------------l~~~~p~~l~~l~~~L~~L~L~~N~l~~--~~~~~~ 194 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNR------------ISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTF 194 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSC------------CEEECCGGGGCCCTTCCEEECCSSEEEE--ECCGGG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCc------------ccCcCCHHHhhhhhcCcEEECcCCeeec--cCChHH
Confidence 999999888 56665 8999999999999998 3556778889998 99999999776421 122222
Q ss_pred ccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcc
Q 037310 519 RLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPE 596 (656)
Q Consensus 519 ~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 596 (656)
.... + +.|++++|.... .+..+..+++|+.| ++++.....++.+..+++|++|++++|.....+
T Consensus 195 ~~l~-L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------ 260 (313)
T 1ogq_A 195 ANLN-L-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL------------ 260 (313)
T ss_dssp GGCC-C-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC------------
T ss_pred hCCc-c-cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC------------
Confidence 2223 6 999999998776 33456677899999 988766556667788999999999998854333
Q ss_pred cccCcccccccccccccCCcchhhhcCCCCCCCChhHHHH
Q 037310 597 VMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSLRS 636 (656)
Q Consensus 597 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~~ 636 (656)
|..+..+++|+.|+++++.-...+|.. ..+++|+.|.+
T Consensus 261 -p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 261 -PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp -CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred -ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 457889999999999998766666654 45666665543
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=2.6e-20 Score=199.31 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=122.0
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCc-ccchhHHhcCCcccEEEccCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLN-EVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
.+.+.+.+...+|. ..+++++|+++++.+..++ .+.++++|++|++++|.+. .+++..|..+++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 45566667777777 4478999999999988763 5689999999999999886 56677789999999999999977
Q ss_pred CccCccccCCcccCcEEeCCCCCCcc-cCcc--ccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRR-LPME--LKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~ 472 (656)
....|..++++++|++|++++|.+.. +|.. +.++++|++|++++|.+..+++ ..++++++|++|++++|..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77778899999999999999999885 4444 8899999999999998888744 3378899999999999875
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=192.96 Aligned_cols=270 Identities=18% Similarity=0.159 Sum_probs=202.2
Q ss_pred cccccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEcc
Q 037310 320 DEKEKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLS 397 (656)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 397 (656)
.+...++.+.+.....+|.. ...+++.|+++++.++.++. +.++++|++|++++|.++.+++..|..+++|++|+++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 34445567777778888863 34689999999999988874 7899999999999999999988889999999999999
Q ss_pred CCCCCccCccccCCcccCcEEeCCCCCCcccCc--cccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCC
Q 037310 398 DGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM--ELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDK 474 (656)
Q Consensus 398 ~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~ 474 (656)
+|.+....+..++.+++|++|++++|.+..+|. .+.++++|++|++++| .+..+++..++.+++|++|++++|..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-- 186 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-- 186 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC--
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc--
Confidence 995554434448999999999999999999987 6899999999999999 68888776689999999999999983
Q ss_pred cCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEe----ccccccHHH
Q 037310 475 QEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVF----NQRRSLLQN 550 (656)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~----~~~~~~L~~ 550 (656)
....+..+..+++|+.|+++.+........ .......+ +.|++++|........ ....+.++.
T Consensus 187 ----------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L-~~L~L~~n~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 187 ----------QSYEPKSLKSIQNVSHLILHMKQHILLLEI--FVDVTSSV-ECLELRDTDLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp ----------CEECTTTTTTCSEEEEEEEECSCSTTHHHH--HHHHTTTE-EEEEEESCBCTTCCCC------CCCCCCE
T ss_pred ----------CccCHHHHhccccCCeecCCCCccccchhh--hhhhcccc-cEEECCCCccccccccccccccccchhhc
Confidence 455577788999999999998875433321 12223446 8889998876653211 111122222
Q ss_pred H-HHhCC-----CCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcch
Q 037310 551 I-CISYS-----KLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNL 618 (656)
Q Consensus 551 L-l~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 618 (656)
+ +.++. ....++++..+++|++|++++|.. ..++. ..++.+++|++|++++++-.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~------------~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPD------------GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCT------------TTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCH------------HHHhcCCCCCEEEeeCCCcc
Confidence 3 32211 111234567899999999999864 34422 23588999999999997643
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=5.2e-20 Score=203.47 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=154.7
Q ss_pred CcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcE
Q 037310 340 GLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQH 417 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 417 (656)
..+.+++.+++.++.+..+|. +..+++|++|++++|.++++++..|..+++|++|++++|.+....|..++.+++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 345678888888888887774 477889999999999998888877889999999999999766666667889999999
Q ss_pred EeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCC
Q 037310 418 LDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQ 496 (656)
Q Consensus 418 L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 496 (656)
|++++|.+..+|+. ++++++|++|++++|.+..+++..++.+++|++|++++|.. ... .++.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------~~~---~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------------THV---DLSLIP 192 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC------------SBC---CGGGCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC------------CCc---Chhhhh
Confidence 99999999988877 58899999999999988888876688899999999998873 211 245567
Q ss_pred CCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEE
Q 037310 497 HLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRI 575 (656)
Q Consensus 497 ~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l 575 (656)
+|+.|+++.+....+ .....+ +.|++++|....++.. .+++|+.| ++++ .+..++++..+++|++|+|
T Consensus 193 ~L~~L~l~~n~l~~l-------~~~~~L-~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 193 SLFHANVSYNLLSTL-------AIPIAV-EELDASHNSINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDL 261 (597)
T ss_dssp TCSEEECCSSCCSEE-------ECCTTC-SEEECCSSCCCEEECS--CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEEC
T ss_pred hhhhhhcccCccccc-------cCCchh-heeeccCCcccccccc--cCCCCCEEECCCC-CCCCChhhccCCCCCEEEC
Confidence 777777776543221 112234 6666666665554322 12456666 5554 3334455666666666666
Q ss_pred eCCc
Q 037310 576 SSCL 579 (656)
Q Consensus 576 ~~~~ 579 (656)
++|.
T Consensus 262 s~N~ 265 (597)
T 3oja_B 262 SYNE 265 (597)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6655
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=1.6e-19 Score=200.57 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=128.3
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|... ..+++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 35667777788888743 478999999999998876 478999999999999999999888899999999999999976
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccC-ccccCCCCCCeEecCCccccc--cChhhhcCCCCCcEEEeeecCCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLP-MELKYLVHLKRLNLEFTRLTR--IPQEVISNLKMLRVLRMYECGSD 473 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--l~~~~l~~l~~L~~L~l~~~~~~ 473 (656)
....|..++++++|++|++++|.+..+| ..++++++|++|++++|.+.. +|.. ++++++|++|++++|...
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 6666889999999999999999999887 569999999999999998874 6766 899999999999999753
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.7e-19 Score=184.12 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=171.5
Q ss_pred cccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeC
Q 037310 341 LWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDP 420 (656)
Q Consensus 341 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l 420 (656)
+.++++.++++++.++.+|.. -.+++++|++++|.++.+++..+..+++|++|++++|.+....|..++.+++|++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 345677788877777766642 2367888888888888888777888888888888888666666778888888888888
Q ss_pred CCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcE
Q 037310 421 ARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNV 500 (656)
Q Consensus 421 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 500 (656)
++|.+..+|..+. ++|++|++++|.+..++...+.++++|++|++++|.. ...+..+..+..+++|+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL----------KSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC----------CGGGBCTTGGGGCTTCCE
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC----------CccCcChhhccCCCCcCE
Confidence 8888888887654 6888888888888888877788888888888888873 222344566778888888
Q ss_pred EEEEecchhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCCCCCcc-ccccCCCccEEEEeC
Q 037310 501 LTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSKLKHLT-WLIVAPNLKHVRISS 577 (656)
Q Consensus 501 L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~~-~l~~l~~L~~L~l~~ 577 (656)
|+++.+.... ++... ...+ +.|++++|....+. ..+..+++|+.| ++++.....++ .+..+++|++|++++
T Consensus 176 L~l~~n~l~~---l~~~~--~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 176 IRIADTNITT---IPQGL--PPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp EECCSSCCCS---CCSSC--CTTC-SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred EECCCCcccc---CCccc--cccC-CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 8888765432 22211 1345 78888887766643 345566677777 77654333332 566778888888887
Q ss_pred CchhhHHhcccccCCcCcccccCcccccccccccccCC
Q 037310 578 CLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDL 615 (656)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 615 (656)
|.. ..+ |..+..+++|++|+++++
T Consensus 250 N~l-~~l-------------p~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 250 NKL-VKV-------------PGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SCC-SSC-------------CTTTTTCSSCCEEECCSS
T ss_pred CcC-ccC-------------ChhhccCCCcCEEECCCC
Confidence 753 333 335667777777777774
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=198.78 Aligned_cols=147 Identities=23% Similarity=0.250 Sum_probs=107.2
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|.. ...+++.|+++++.++.++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3455566666666652 3456888888888777665 567788888888888888877777778888888888888865
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccc--cChhhhcCCCCCcEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTR--IPQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--l~~~~l~~l~~L~~L~l~~~~~ 472 (656)
....|..++.+++|++|++++|.+..+|. .++++++|++|++++|.+.. +|.. ++++++|++|++++|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcc
Confidence 55555677788888888888887777765 47777888888888777665 4554 77777888887777654
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=3.4e-19 Score=186.41 Aligned_cols=245 Identities=16% Similarity=0.143 Sum_probs=155.1
Q ss_pred cEEEEcCCCCCCCCC--CCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAPG--IGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+...+.....+|. ...+++++.|+++++.+..++ .+..+++|++|++++|.++.+++..+..+++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 455566666666666 355678999999999888775 5688999999999999999998888899999999999999
Q ss_pred CCCccCccc-cCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCC
Q 037310 400 SLPGHLLTG-ISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEG 477 (656)
Q Consensus 400 ~~~~~~p~~-~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 477 (656)
.+ ..+|.. ++.+++|++|++++|.+..+++ .+..+++|++|++++|.++.++ ++.+++|++|++++|.......
T Consensus 128 ~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 128 DL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEEC
T ss_pred cc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCC
Confidence 54 455554 5889999999999999988765 4889999999999999888876 4466777777776665321100
Q ss_pred Ccc------cccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHH
Q 037310 478 DSI------LIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQN 550 (656)
Q Consensus 478 ~~~------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~ 550 (656)
... ........+ ....++|+.|+++.+....... ......+ +.|++++|....+. ..+..+++|+.
T Consensus 204 ~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~----l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDTAW----LLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCCGG----GGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCcceEEECCCCeeeecc--ccccccccEEECCCCCCcccHH----HcCCCCc-cEEECCCCcCCCcChhHccccccCCE
Confidence 000 000000000 0112456666666554332211 1122234 56666666555432 23444555666
Q ss_pred H-HHhCCCCCCccccccCCCccEEEEeCCc
Q 037310 551 I-CISYSKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 551 L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
| ++++.....+.....+++|++|++++|.
T Consensus 277 L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp EECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred EECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 6 5554322222233455666666666654
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.7e-19 Score=197.76 Aligned_cols=270 Identities=15% Similarity=0.127 Sum_probs=169.4
Q ss_pred cEEEEcCCCCCCCCCC--CcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAPGI--GLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~--~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
.++...+.....+|.. ..+++++.|+++++.+..++ .+..+++|++|++++|.++.+++..|+.+++|++|++++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 3455555555666652 45678889999988887775 5688889999999999888888887888999999999988
Q ss_pred CCCccCcc-ccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCC
Q 037310 400 SLPGHLLT-GISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEG 477 (656)
Q Consensus 400 ~~~~~~p~-~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 477 (656)
.+. .+|. .++.+++|++|++++|.+..+|+ .+.++++|++|++++|.+..++. +.+++|++|++++|.......
T Consensus 134 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCSEEEC
T ss_pred CCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccccccC
Confidence 544 4544 46888999999999998887765 58888999999999888887763 456666666666554321100
Q ss_pred C------------------ccc--------ccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeec
Q 037310 478 D------------------SIL--------IGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLK 531 (656)
Q Consensus 478 ~------------------~~~--------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~ 531 (656)
. ... ....-..+..+..+++|+.|+++++..... .+........+ +.|+++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L-~~L~Ls 286 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQRL-ERLYIS 286 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE--ESGGGTTCSSC-CEEECT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC--CHHHhcCccCC-CEEECC
Confidence 0 000 000000123455566666666665543211 11112222334 666666
Q ss_pred ccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccc
Q 037310 532 HCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYL 610 (656)
Q Consensus 532 ~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 610 (656)
+|....++.....+++|+.| +++|.....++.+..+++|++|+|++|... . ..++.+++|+.|
T Consensus 287 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~-~---------------~~~~~~~~L~~L 350 (597)
T 3oja_B 287 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-T---------------LKLSTHHTLKNL 350 (597)
T ss_dssp TSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-C---------------CCCCTTCCCSEE
T ss_pred CCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC-C---------------cChhhcCCCCEE
Confidence 66665555555555666666 666544433445556666666666666531 1 135566777777
Q ss_pred cccCCc
Q 037310 611 ILEDLK 616 (656)
Q Consensus 611 ~l~~~~ 616 (656)
++++++
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 776654
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.3e-19 Score=198.85 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=125.6
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
.++...+.....+|... ..+++.|+++++.++.++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 8 ~~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp SEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ceEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 34556666777777643 378999999999988774 578999999999999999999888899999999999999966
Q ss_pred CccCccccCCcccCcEEeCCCCCCcc--cCccccCCCCCCeEecCCcc-ccccChhhhcCCCCCcEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRR--LPMELKYLVHLKRLNLEFTR-LTRIPQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~-~~~l~~~~l~~l~~L~~L~l~~~~~ 472 (656)
....|..++++++|++|++++|.+.. .|..++++++|++|++++|. +..+|...++++++|++|++++|..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 66666669999999999999999884 46779999999999999995 7788865589999999999999984
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=1.5e-19 Score=193.47 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=109.5
Q ss_pred cEEEEcCCCCCCC--CCCCcccceeEeecchhhHh-hhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccC
Q 037310 324 KFLVLAGVGLQNA--PGIGLWKEVTRMSLMQIRIR-RLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSD 398 (656)
Q Consensus 324 ~~~~~~~~~~~~~--~~~~~~~~~~~L~l~~~~~~-~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 398 (656)
..+..++..+..+ .....+.+++.|+++++.+. .++ .+.++++|++|++++|.++.+.+..+..+++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 4556666666554 23567889999999999875 443 478899999999999999998888899999999999999
Q ss_pred CCCCccCccc--cCCcccCcEEeCCCCCCccc-Ccc-ccCCCCCCeEecCCccccccChhhhcCC
Q 037310 399 GSLPGHLLTG--ISNLVSLQHLDPARSKIRRL-PME-LKYLVHLKRLNLEFTRLTRIPQEVISNL 459 (656)
Q Consensus 399 ~~~~~~~p~~--~~~L~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l 459 (656)
|.+....|.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|.+..+++..+..+
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 9766655555 89999999999999999977 444 8899999999999998887765445443
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.1e-19 Score=183.55 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=148.6
Q ss_pred ccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCC
Q 037310 342 WKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPA 421 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~ 421 (656)
.++++.++++++.++.+|... .+++++|++++|.+..+++..+..+++|++|++++|.+....|..++.+++|++|+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 346777777777776665322 3677888888887777776667778888888888876655557777888888888888
Q ss_pred CCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEE
Q 037310 422 RSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVL 501 (656)
Q Consensus 422 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 501 (656)
+|.+..+|..+. ++|++|++++|.+..++...+..+++|++|++++|.. ...+..+..+..+ +|+.|
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL----------ENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC----------BGGGSCTTSSCSC-CCSCC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc----------ccCCCCcccccCC-ccCEE
Confidence 887777777654 6788888888877777776677788888888887763 1122333444445 66666
Q ss_pred EEEecchhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCCCCCcc-ccccCCCccEEEEeCC
Q 037310 502 TVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSKLKHLT-WLIVAPNLKHVRISSC 578 (656)
Q Consensus 502 ~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~~-~l~~l~~L~~L~l~~~ 578 (656)
+++.+.... ++... ...+ +.|++++|....+. ..+..+++|+.| ++++.....++ .+..+++|++|++++|
T Consensus 178 ~l~~n~l~~---l~~~~--~~~L-~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 178 RISEAKLTG---IPKDL--PETL-NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp BCCSSBCSS---CCSSS--CSSC-SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ECcCCCCCc---cCccc--cCCC-CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 666554322 22111 1334 66666666555533 234455566666 65543322222 4556666666666665
Q ss_pred chhhHHhcccccCCcCcccccCcccccccccccccC
Q 037310 579 LDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILED 614 (656)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 614 (656)
.. ..+ |..+..+++|+.|++++
T Consensus 252 ~l-~~l-------------p~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 252 KL-SRV-------------PAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CC-CBC-------------CTTGGGCTTCCEEECCS
T ss_pred cC-eec-------------ChhhhcCccCCEEECCC
Confidence 42 222 23455555566666555
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=3.6e-19 Score=190.72 Aligned_cols=141 Identities=17% Similarity=0.310 Sum_probs=94.5
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH 404 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 404 (656)
.+.+.+.....++....+++++.|+++++.+..++.+.++++|++|++++|.+..+++ +..+++|++|++++|. ...
T Consensus 50 ~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~ 126 (466)
T 1o6v_A 50 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITD 126 (466)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCC
T ss_pred EEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC-CCC
Confidence 3444555566667666777888888888877777767778888888888887777765 7778888888888874 334
Q ss_pred CccccCCcccCcEEeCCCCCCcccCc--------------------cccCCCCCCeEecCCccccccChhhhcCCCCCcE
Q 037310 405 LLTGISNLVSLQHLDPARSKIRRLPM--------------------ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRV 464 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~~lp~--------------------~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~ 464 (656)
++. ++.+++|++|++++|.+..+|. .+.++++|++|++++|.+..++. +..+++|++
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 203 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLES 203 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred ChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--hccCCCCCE
Confidence 443 7777778887777776665542 13445555556666555555543 555566666
Q ss_pred EEeeecC
Q 037310 465 LRMYECG 471 (656)
Q Consensus 465 L~l~~~~ 471 (656)
|++++|.
T Consensus 204 L~l~~n~ 210 (466)
T 1o6v_A 204 LIATNNQ 210 (466)
T ss_dssp EECCSSC
T ss_pred EEecCCc
Confidence 6666555
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=2.3e-19 Score=199.31 Aligned_cols=216 Identities=18% Similarity=0.102 Sum_probs=115.2
Q ss_pred ccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccc----
Q 037310 406 LTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSIL---- 481 (656)
Q Consensus 406 p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---- 481 (656)
+..++.+++|++|++++|.+..+|..+..+++|++|++++|.+..+++..+..+++|++|++++|......+.+..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3346777788888888888888888888888888888888877777555577788888888887763211110000
Q ss_pred --------cc-Cccc--cHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEE-E-eccccccH
Q 037310 482 --------IG-GREV--LVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-V-FNQRRSLL 548 (656)
Q Consensus 482 --------~~-~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~-~~~~~~~L 548 (656)
.. .... .+..+..+++|+.|+++.+..... .+........+ +.|++++|...... . .+..+++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQL-ELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE--CTTTTTTCTTC-SEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC--CHHHhcCCccC-CeEECCCCcCCCcccchhhhCcccC
Confidence 00 0000 022344444555555544332111 01111222234 55555555443321 1 13444555
Q ss_pred HHH-HHhCCCCCCc-cccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCC
Q 037310 549 QNI-CISYSKLKHL-TWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSAL 626 (656)
Q Consensus 549 ~~L-l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 626 (656)
+.| +++|.....+ ..+..+++|++|++++|........ .+..+..+++|++|++++|.-....+....
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ----------KTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC----------SSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc----------cchhhccCCCccEEECCCCccCccChhhhc
Confidence 555 5554433322 2355566666666666654321111 013567788888888888644333344444
Q ss_pred CCCChhHH
Q 037310 627 PFPHLQSL 634 (656)
Q Consensus 627 ~~~~L~~L 634 (656)
.+++|+.|
T Consensus 498 ~l~~L~~L 505 (606)
T 3t6q_A 498 SLKMMNHV 505 (606)
T ss_dssp TCTTCCEE
T ss_pred cccCCCEE
Confidence 55666544
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=5.6e-20 Score=208.11 Aligned_cols=276 Identities=12% Similarity=0.063 Sum_probs=177.1
Q ss_pred CCcccceeEeecchhhHhh------------------hcc-CC--CCCCcceEeccccCCcccchhHHhcCCcccEEEcc
Q 037310 339 IGLWKEVTRMSLMQIRIRR------------------LLE-SS--SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLS 397 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 397 (656)
...+.+++.|++++|.+.. +|. +. ++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4567789999999998877 664 34 78999999999998777666778899999999999
Q ss_pred CCC-CCc-cCccccCCcc-------cCcEEeCCCCCCcccCc--cccCCCCCCeEecCCccccccChhhhcCCCCCcEEE
Q 037310 398 DGS-LPG-HLLTGISNLV-------SLQHLDPARSKIRRLPM--ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLR 466 (656)
Q Consensus 398 ~~~-~~~-~~p~~~~~L~-------~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~ 466 (656)
+|. +.. .+|..++.++ +|++|++++|.+..+|. .++++++|++|++++|.+..+| . ++.+++|++|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTTSEESEEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h-hcCCCcceEEE
Confidence 996 555 6787777665 99999999999989998 8999999999999999888888 3 88999999999
Q ss_pred eeecCCCCcCCCcccccCccccHHHhhcCCC-CcEEEEEecchhhhHhhhcCcccccc--cCCceeecccccceEEEec-
Q 037310 467 MYECGSDKQEGDSILIGGREVLVVEILSLQH-LNVLTVTLESFCALRMLLDSPRLQSL--STPSLCLKHCCQSELLVFN- 542 (656)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~~~~~--ll~~L~l~~~~~~~~~~~~- 542 (656)
+++|.. . ..+..+..+++ |+.|+++.+... .++........ + +.|++++|......+.+
T Consensus 602 Ls~N~l------------~-~lp~~l~~l~~~L~~L~Ls~N~L~---~lp~~~~~~~~~~L-~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 602 LDYNQI------------E-EIPEDFCAFTDQVEGLGFSHNKLK---YIPNIFNAKSVYVM-GSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CCSSCC------------S-CCCTTSCEECTTCCEEECCSSCCC---SCCSCCCTTCSSCE-EEEECCSSCTTTTSSSCS
T ss_pred CcCCcc------------c-cchHHHhhccccCCEEECcCCCCC---cCchhhhccccCCC-CEEECcCCcCCCccccch
Confidence 999883 2 44555777777 888888777543 23333222221 4 56666665543311111
Q ss_pred ---c--ccccHHHH-HHhCCCCCCcccc-ccCCCccEEEEeCCchhhHHhcccc-------------------cCCcCcc
Q 037310 543 ---Q--RRSLLQNI-CISYSKLKHLTWL-IVAPNLKHVRISSCLDLEEIISVEK-------------------LGEVSPE 596 (656)
Q Consensus 543 ---~--~~~~L~~L-l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~~~~ 596 (656)
. ..++|+.| +++|.....+..+ ..+++|++|+|++|... .++.... .+.+..
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~- 742 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-
Confidence 0 11244445 4443322222222 24455555555544321 2211100 000111
Q ss_pred cccCcc--cccccccccccCCcchhhhcCCCCCCCChhHHHH
Q 037310 597 VMHNLI--PLARIEYLILEDLKNLKSIHSSALPFPHLQSLRS 636 (656)
Q Consensus 597 ~~~~~~--~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~~ 636 (656)
.|..+. .+++|+.|+|+++. +..+|.....+++|+.|.+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEEC
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEEC
Confidence 133454 77888888888753 4446655555666665543
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=4.1e-19 Score=202.12 Aligned_cols=256 Identities=16% Similarity=0.070 Sum_probs=196.2
Q ss_pred ccceeEeecchhhHhh-hc-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 342 WKEVTRMSLMQIRIRR-LL-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
..+++.|++.+|.+.. +| .+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 4578888888887763 33 467888999999999988877777788999999999999977778888899999999999
Q ss_pred CCCCCCc-ccCccccCCCCCCeEecCCcccc-ccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCC
Q 037310 420 PARSKIR-RLPMELKYLVHLKRLNLEFTRLT-RIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQH 497 (656)
Q Consensus 420 l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 497 (656)
+++|.+. .+|..+.++++|++|++++|.+. .+|.. ++.+++|++|++++|. ..+..+..++.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~------------l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS------------FSGNIPAELGDCRS 539 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC------------CEEECCGGGGGCTT
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCc------------ccCcCCHHHcCCCC
Confidence 9999888 67888999999999999999887 55655 8889999999999998 36677888999999
Q ss_pred CcEEEEEecchh-h----hHhh----------------------------------------------------------
Q 037310 498 LNVLTVTLESFC-A----LRML---------------------------------------------------------- 514 (656)
Q Consensus 498 L~~L~l~~~~~~-~----~~~l---------------------------------------------------------- 514 (656)
|+.|+++.+... . +...
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 999999876532 0 0000
Q ss_pred -----hcCcccccccCCceeecccccce-EEEeccccccHHHH-HHhCCCCCCc-cccccCCCccEEEEeCCchhhHHhc
Q 037310 515 -----LDSPRLQSLSTPSLCLKHCCQSE-LLVFNQRRSLLQNI-CISYSKLKHL-TWLIVAPNLKHVRISSCLDLEEIIS 586 (656)
Q Consensus 515 -----~~~~~~~~~ll~~L~l~~~~~~~-~~~~~~~~~~L~~L-l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~ 586 (656)
+........+ +.|++++|.... ++..+..+++|+.| ++++.....+ ..++.+++|++|+|++|.....+
T Consensus 620 ~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i-- 696 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI-- 696 (768)
T ss_dssp EEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC--
T ss_pred ecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC--
Confidence 0001112334 778888887765 55567777788888 8887665444 46788888999998888755444
Q ss_pred ccccCCcCcccccCcccccccccccccCCcchhhhcCC
Q 037310 587 VEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSS 624 (656)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 624 (656)
|..++.+++|++|++++++-...||..
T Consensus 697 -----------p~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 697 -----------PQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp -----------CGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred -----------ChHHhCCCCCCEEECcCCcccccCCCc
Confidence 457889999999999998766777653
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.4e-19 Score=179.87 Aligned_cols=242 Identities=19% Similarity=0.135 Sum_probs=130.7
Q ss_pred EeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc--CccccCCcccCcEEeCCCCC
Q 037310 347 RMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH--LLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 347 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~L~~L~~L~l~~~~ 424 (656)
.++..++.++.+|. .-.+++++|++++|.++.+++..|..+++|++|++++|.+... .|..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 34444444444442 1124566666666666665555556666666666666633311 13444556666666666666
Q ss_pred CcccCccccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 425 IRRLPMELKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 425 ~~~lp~~~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
+..+|..+..+++|++|++++|.+..++. ..+..+++|++|++++|.. ....+..+..+++|+.|++
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------------RVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC------------EECSTTTTTTCTTCCEEEC
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC------------CccchhhcccCcCCCEEEC
Confidence 66666556666666666666665555543 2355566666666666652 2333344555566666666
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCCCCCcc-ccccCCCccEEEEeCCch
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSKLKHLT-WLIVAPNLKHVRISSCLD 580 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 580 (656)
+++.... ..++........+ +.|++++|....+.+ .+..+++|+.| ++++......+ .+..+++|++|++++|..
T Consensus 158 ~~n~l~~-~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 158 AGNSFQE-NFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TTCEEGG-GEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCcccc-ccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 5543211 0122223333345 666666666555422 34455566666 66654333222 456678888888887764
Q ss_pred hhHHhcccccCCcCcccccCccccc-ccccccccCCc
Q 037310 581 LEEIISVEKLGEVSPEVMHNLIPLA-RIEYLILEDLK 616 (656)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 616 (656)
.... |..+..+| +|++|++++++
T Consensus 236 ~~~~-------------~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 236 MTSK-------------KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CBCS-------------SSSCCCCCTTCCEEECTTCC
T ss_pred cccC-------------HHHHHhhhccCCEEEccCCC
Confidence 3322 23566664 78888887754
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=5.9e-19 Score=188.29 Aligned_cols=145 Identities=25% Similarity=0.297 Sum_probs=73.9
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
+.+.+.....+|.. ...+++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus 59 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 33444444444432 2245555555555554442 34555555555555555555554445555555555555553333
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecC
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
..+..++.+++|++|++++|.+..+|. .+.++++|++|++++| .+..++...+..+++|++|++++|.
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 333335555555555555555555544 3455555555555553 4455554445555555555555554
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=5.6e-19 Score=196.17 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=104.0
Q ss_pred cEEEEcCCCCCCCCC--CCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAPG--IGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+...+..+..++. ...+.+++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 445566666665543 567788999999999888774 4688899999999999988887777888999999999998
Q ss_pred CCCccCccccCCcccCcEEeCCCCCCc--ccCccccCCCCCCeEecCCccccccChh
Q 037310 400 SLPGHLLTGISNLVSLQHLDPARSKIR--RLPMELKYLVHLKRLNLEFTRLTRIPQE 454 (656)
Q Consensus 400 ~~~~~~p~~~~~L~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~l~~~ 454 (656)
.+....|..++++++|++|++++|.+. .+|..++++++|++|++++|.+..+++.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 665555577889999999999999887 4788888899999988888877766543
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=188.57 Aligned_cols=142 Identities=22% Similarity=0.241 Sum_probs=118.4
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+++.....+|.... .++++|+++++.+..++ .+.++++|++|++++|.++++.+..|..+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 456677777777876443 88999999999988775 568899999999999999999888899999999999999954
Q ss_pred CccCccccCCcccCcEEeCCCCCCcc--cCccccCCCCCCeEecCCccccccChhhhcCCCCC--cEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRR--LPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKML--RVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L--~~L~l~~~~~ 472 (656)
..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.... +..+++| ++|++++|..
T Consensus 82 -~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 -VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG---GGGGTTSCEEEEEEEECTT
T ss_pred -eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh---ccccccceeeEEEeecccc
Confidence 467765 89999999999999885 5688999999999999999877622 6777888 9999999875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=7.1e-19 Score=179.55 Aligned_cols=282 Identities=16% Similarity=0.111 Sum_probs=202.7
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.....+|.. ..+.++.|+++++.+..++ .+.++++|++|++++|.++.+.+..+..+++|++|++++|. .
T Consensus 35 ~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 112 (330)
T 1xku_A 35 VVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-L 112 (330)
T ss_dssp EEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-C
T ss_pred EEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-C
Confidence 445566666666653 3368999999999998886 47899999999999999999988889999999999999994 5
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccc--cChhhhcCCCCCcEEEeeecCCCCcCCCc
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTR--IPQEVISNLKMLRVLRMYECGSDKQEGDS 479 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--l~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 479 (656)
..+|..+. ++|++|++++|.+..++.. +.++++|++|++++|.+.. +....+..+++|++|++++|...
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 184 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------ 184 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC------
T ss_pred CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc------
Confidence 56776665 7999999999999988764 8999999999999997753 44444889999999999999841
Q ss_pred ccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCC
Q 037310 480 ILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSK 557 (656)
Q Consensus 480 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~ 557 (656)
..+..+ .++|+.|+++.+...... +........+ +.|++++|....+.+ .+..+++|+.| ++++..
T Consensus 185 -------~l~~~~--~~~L~~L~l~~n~l~~~~--~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 185 -------TIPQGL--PPSLTELHLDGNKITKVD--AASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp -------SCCSSC--CTTCSEEECTTSCCCEEC--TGGGTTCTTC-CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred -------cCCccc--cccCCEEECCCCcCCccC--HHHhcCCCCC-CEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 111112 268999999877543221 1222233446 999999998877654 46677889999 988765
Q ss_pred CCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHHHH
Q 037310 558 LKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSLRS 636 (656)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~~ 636 (656)
...+.++..+++|++|++++|. ++.++.... ... .....+++|+.|.+.+++. ..+...+..|..+..++.
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f----~~~--~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF----CPP--GYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS----SCS--SCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGG
T ss_pred ccCChhhccCCCcCEEECCCCc-CCccChhhc----CCc--ccccccccccceEeecCcc-cccccCccccccccceeE
Confidence 5555678899999999999987 343322100 000 0112357889999998663 223333344554444433
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=186.91 Aligned_cols=236 Identities=19% Similarity=0.188 Sum_probs=134.7
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
+.+.+.....+|.. ....++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus 48 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 48 VICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 44555555566642 2356677777777666554 45667777777777777776666667777777777777774443
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCCcCCCccc
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSIL 481 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 481 (656)
..+..+..+++|++|++++|.+..+|. .+.++++|++|++++| .+..++...+.++++|++|++++|..
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l--------- 197 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--------- 197 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC---------
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC---------
Confidence 333456677777777777777776655 4666777777777764 56666665566777777777777762
Q ss_pred ccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCCCC
Q 037310 482 IGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSKLK 559 (656)
Q Consensus 482 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~~~ 559 (656)
. . +..+..+++|+.|+++++...... +..+.....+ +.|++++|....+.+ .+..+++|+.| ++++....
T Consensus 198 ---~-~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 198 ---R-E-IPNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHL-QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp ---S-S-CCCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTC-CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred ---c-c-ccccCCCcccCEEECCCCccCccC--hhhhccCccC-CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 1 0 113556666666666655432211 1222223334 666666665554322 23344455555 55532222
Q ss_pred Ccc-ccccCCCccEEEEeCCc
Q 037310 560 HLT-WLIVAPNLKHVRISSCL 579 (656)
Q Consensus 560 ~~~-~l~~l~~L~~L~l~~~~ 579 (656)
.++ .+..+++|++|+|++|+
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSC
T ss_pred cChhHhccccCCCEEEcCCCC
Confidence 221 23445555555555544
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=3.2e-19 Score=182.24 Aligned_cols=284 Identities=16% Similarity=0.106 Sum_probs=203.2
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.....+|... .++++.|+++++.+..++ .+.++++|++|++++|.++.+.+..+..+++|++|++++|. .
T Consensus 37 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 114 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-L 114 (332)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-C
T ss_pred EEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-C
Confidence 4555666667777633 468999999999998875 47999999999999999999988889999999999999994 5
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccc--cChhhhcCCCCCcEEEeeecCCCCcCCCc
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTR--IPQEVISNLKMLRVLRMYECGSDKQEGDS 479 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--l~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 479 (656)
..+|..+. ++|++|++++|.+..+|.. +.++++|++|++++|.++. +++..+..+ +|++|++++|....
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~----- 186 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG----- 186 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-----
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-----
Confidence 57776665 8999999999999998875 8999999999999998763 444446777 99999999998411
Q ss_pred ccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCC
Q 037310 480 ILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSK 557 (656)
Q Consensus 480 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~ 557 (656)
.+..+. ++|+.|+++++...... +........+ +.|++++|....+.+ .+..+++|+.| ++++.-
T Consensus 187 --------l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 187 --------IPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp --------CCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred --------cCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 122222 67888888877543221 1223333456 999999998777544 46677899999 888755
Q ss_pred CCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHHHHH
Q 037310 558 LKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSLRSC 637 (656)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~~~ 637 (656)
...+..+..+++|++|++++|.. +.++... +... .....+++|+.|.+.+++.. ........|..++.|+.+
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~----~~~~--~~~~~~~~l~~L~l~~N~~~-~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNNI-TKVGVND----FCPV--GFGVKRAYYNGISLFNNPVP-YWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSCC-CBCCTTS----SSCS--SCCSSSCCBSEEECCSSSSC-GGGSCGGGGTTBCCSTTE
T ss_pred eecChhhhcCccCCEEECCCCCC-CccChhH----cccc--ccccccccccceEeecCccc-ccccCcccccccchhhhh
Confidence 54455688999999999999873 3332210 0000 01112678999999997643 222333445555544443
Q ss_pred Hh
Q 037310 638 LL 639 (656)
Q Consensus 638 ~~ 639 (656)
.+
T Consensus 326 ~l 327 (332)
T 2ft3_A 326 QF 327 (332)
T ss_dssp EC
T ss_pred hc
Confidence 33
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=2.7e-19 Score=203.65 Aligned_cols=280 Identities=18% Similarity=0.131 Sum_probs=165.7
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhh-hccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRR-LLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH 404 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 404 (656)
+...+...........+.+++.|++++|.+.. ++.+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 183 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262 (768)
T ss_dssp EECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES
T ss_pred EECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc
Confidence 33333333333334566778888888887655 44567788888888888888777677778888888888888866555
Q ss_pred CccccCCcccCcEEeCCCCCCc-ccCccccCC-CCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccc
Q 037310 405 LLTGISNLVSLQHLDPARSKIR-RLPMELKYL-VHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILI 482 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~-~lp~~~~~l-~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 482 (656)
.|.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.+....+..++.+++|++|++++|..
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l---------- 330 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF---------- 330 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE----------
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc----------
Confidence 5533 6777777777777766 667666554 7777777777766633333377777777777777762
Q ss_pred cCccccHHH-hhcCCCCcEEEEEecchhhhHhhhcCccccc-cc-------------------------CCceeeccccc
Q 037310 483 GGREVLVVE-ILSLQHLNVLTVTLESFCALRMLLDSPRLQS-LS-------------------------TPSLCLKHCCQ 535 (656)
Q Consensus 483 ~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~-~l-------------------------l~~L~l~~~~~ 535 (656)
.+..+.. +..+++|+.|+++.+.... .++....... .+ |+.|++++|..
T Consensus 331 --~~~ip~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 331 --SGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp --EEECCHHHHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred --cCcCCHHHHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 3333333 6677777777776554310 1111111111 23 14444444444
Q ss_pred ce-EEEeccccccHHHH-HHhCCCCCC-ccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccc
Q 037310 536 SE-LLVFNQRRSLLQNI-CISYSKLKH-LTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLIL 612 (656)
Q Consensus 536 ~~-~~~~~~~~~~L~~L-l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 612 (656)
.. ++..+..+++|+.| ++++..... +..+..+++|++|++++|..... .|..++.+++|++|++
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-------------~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-------------IPQELMYVKTLETLIL 473 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-------------CCGGGGGCTTCCEEEC
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-------------CCHHHcCCCCceEEEe
Confidence 33 22233444455555 544432222 22445555555555555543222 2456778888888888
Q ss_pred cCCcchhhhcCCCCCCCChhHH
Q 037310 613 EDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 613 ~~~~~l~~i~~~~~~~~~L~~L 634 (656)
.+|.-...+|.....+++|+.|
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCcccCcCCHHHhcCCCCCEE
Confidence 8876555555555556666654
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=1.9e-18 Score=185.11 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=26.7
Q ss_pred cCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 409 ISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 409 ~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
++++++|++|++++|.+..++. +..+++|++|++++|.+..+++ ++.+++|++|++++|.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 4444444444444444444332 4444444444444444444433 3344444444444443
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=8.5e-19 Score=198.49 Aligned_cols=294 Identities=15% Similarity=0.176 Sum_probs=202.8
Q ss_pred cEEEEcCCC-CCCCCC-CCcccceeEeecchhh-Hhh--hc--------cCCCCCCcceEeccccCCcccch-hHHhcCC
Q 037310 324 KFLVLAGVG-LQNAPG-IGLWKEVTRMSLMQIR-IRR--LL--------ESSSSPHLQTLFLGSNDLNEVNR-DFFQFMA 389 (656)
Q Consensus 324 ~~~~~~~~~-~~~~~~-~~~~~~~~~L~l~~~~-~~~--l~--------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 389 (656)
..+.+.... ...+|. ...+++++.|++++|. +.. +| .+..+++|++|++++|.++.++. ..+..++
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~ 573 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC
Confidence 345555544 344554 4677899999999987 553 33 34567799999999999997765 3589999
Q ss_pred cccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCC-CCeEecCCccccccChhhhcCCCC--CcEEE
Q 037310 390 SLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVH-LKRLNLEFTRLTRIPQEVISNLKM--LRVLR 466 (656)
Q Consensus 390 ~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~l~~~~l~~l~~--L~~L~ 466 (656)
+|+.|++++|.+. .+| .++.+++|+.|++++|.+..+|..+.++++ |++|++++|.+..+|.. +..+.. |++|+
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVD 650 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh-hhccccCCCCEEE
Confidence 9999999999655 788 899999999999999999999999999998 99999999988888865 655544 88888
Q ss_pred eeecCCCCcCCC----------------cccccCccccHHHh-hcCCCCcEEEEEecchhhhHhhhcCc-ccc-------
Q 037310 467 MYECGSDKQEGD----------------SILIGGREVLVVEI-LSLQHLNVLTVTLESFCALRMLLDSP-RLQ------- 521 (656)
Q Consensus 467 l~~~~~~~~~~~----------------~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~~-~~~------- 521 (656)
+++|......+. ..........+..+ ..+++|+.|+++.+... .++... ...
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT---SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS---CCCTTSSSCTTSCCTTG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC---ccChHHhcccccccccc
Confidence 888875332110 00000111233333 46788888888877544 222211 111
Q ss_pred cccCCceeecccccceEEEecc--ccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccc
Q 037310 522 SLSTPSLCLKHCCQSELLVFNQ--RRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVM 598 (656)
Q Consensus 522 ~~ll~~L~l~~~~~~~~~~~~~--~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 598 (656)
..+ +.|++++|....++..+. .+++|+.| ++++.....+..+..+++|+.|+|++|..+.. ..+....|
T Consensus 728 ~~L-~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~-------N~l~~~ip 799 (876)
T 4ecn_A 728 YLL-TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG-------NRILRQWP 799 (876)
T ss_dssp GGC-CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTC-------CBCCCCCC
T ss_pred CCc-cEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccc-------ccccccCh
Confidence 146 888888887776655554 67788888 88865555445677888999999887541110 11122235
Q ss_pred cCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 599 HNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 599 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
..+..+++|+.|++++|.- ..+|... +++|+.|
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~L 832 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYIL 832 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEE
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEE
Confidence 6788899999999999765 7776653 3555543
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=199.92 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=127.7
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccC-CcccchhHHhcCCcccEEEccCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSND-LNEVNRDFFQFMASLRVLTLSDGS 400 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 400 (656)
....+.......+|. ..++++.|++++|.++.+. .+.++++|++|++++|. ...+++..|..+++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 466778888888997 6789999999999998764 67999999999999994 456667789999999999999997
Q ss_pred CCccCccccCCcccCcEEeCCCCCCcc-cCcc--ccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCC
Q 037310 401 LPGHLLTGISNLVSLQHLDPARSKIRR-LPME--LKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 401 ~~~~~p~~~~~L~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~ 472 (656)
+....|..++++++|++|++++|.+.. +|.. +.++++|++|++++|.+..++. ..++++++|++|++++|..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 777779999999999999999999885 5554 8999999999999998887643 3489999999999999984
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=190.09 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=117.5
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|... .++++.|++++|.+..++ .+.++++|++|++++|.++.++++.|..+++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 56777888888888643 389999999999998886 67999999999999999999988889999999999999995
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccC--ccccCCCCCCeEecCCccccccChhhhcCCCCC--cEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLP--MELKYLVHLKRLNLEFTRLTRIPQEVISNLKML--RVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L--~~L~l~~~~~ 472 (656)
...+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.... +..+++| ++|++++|..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence 4567765 8999999999999998765 68999999999999999776533 3344444 7777766654
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=8.7e-20 Score=202.86 Aligned_cols=261 Identities=12% Similarity=0.111 Sum_probs=126.7
Q ss_pred ccceeEeecchhhHhh-hc-cCCCCCCcceEeccccC-Ccc-cchhHHhcC------CcccEEEccCCCCCccCcc--cc
Q 037310 342 WKEVTRMSLMQIRIRR-LL-ESSSSPHLQTLFLGSND-LNE-VNRDFFQFM------ASLRVLTLSDGSLPGHLLT--GI 409 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~p~--~~ 409 (656)
+.+++.|++++|.+.. +| .+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+. .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 4455555555554322 22 23445555555555554 443 222223333 55555555555333 4444 45
Q ss_pred CCcccCcEEeCCCCCCc-ccCccccCCCCCCeEecCCccccccChhhhcCCCC-CcEEEeeecCCCCcCCCcccccCccc
Q 037310 410 SNLVSLQHLDPARSKIR-RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKM-LRVLRMYECGSDKQEGDSILIGGREV 487 (656)
Q Consensus 410 ~~L~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~ 487 (656)
+++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|.. +..+++ |++|++++|.. . .
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l------------~-~ 391 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKL------------K-Y 391 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCC------------S-S
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcC------------c-c
Confidence 55555555555555555 455 455555555555555555555544 455555 55555555542 1 1
Q ss_pred cHHHhhcC--CCCcEEEEEecchhhhHhhhcCcc-------cccccCCceeecccccceEEEec-cccccHHHH-HHhCC
Q 037310 488 LVVEILSL--QHLNVLTVTLESFCALRMLLDSPR-------LQSLSTPSLCLKHCCQSELLVFN-QRRSLLQNI-CISYS 556 (656)
Q Consensus 488 ~~~~l~~l--~~L~~L~l~~~~~~~~~~l~~~~~-------~~~~ll~~L~l~~~~~~~~~~~~-~~~~~L~~L-l~~~~ 556 (656)
.+..+..+ ++|+.|+++.+..... .+.... ....+ +.|++++|....++... ..+++|+.| ++++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L-~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCE-EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred cchhhhhcccCccCEEECcCCcCCCc--chhhhcccccccccCCCC-CEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 22222222 2555555554432111 111111 11124 55566665555433322 224556666 65543
Q ss_pred CCCCccccc-c-------CCCccEEEEeCCchhhHHhcccccCCcCcccccCcc--cccccccccccCCcchhhhcCCCC
Q 037310 557 KLKHLTWLI-V-------APNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLI--PLARIEYLILEDLKNLKSIHSSAL 626 (656)
Q Consensus 557 ~~~~~~~l~-~-------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~i~~~~~ 626 (656)
....+.... . +++|++|+|++|... .+ |..+. .+++|+.|+++++. +..+|....
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-------------p~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~ 533 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL-------------SDDFRATTLPYLVGIDLSYNS-FSKFPTQPL 533 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC-------------CGGGSTTTCTTCCEEECCSSC-CSSCCCGGG
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCcCC-cc-------------ChhhhhccCCCcCEEECCCCC-CCCcChhhh
Confidence 332222221 1 126666666666532 22 34554 88999999999854 444776666
Q ss_pred CCCChhHHHH
Q 037310 627 PFPHLQSLRS 636 (656)
Q Consensus 627 ~~~~L~~L~~ 636 (656)
.+++|+.|.+
T Consensus 534 ~l~~L~~L~L 543 (636)
T 4eco_A 534 NSSTLKGFGI 543 (636)
T ss_dssp GCSSCCEEEC
T ss_pred cCCCCCEEEC
Confidence 6777777654
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=4.2e-18 Score=181.08 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=116.8
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH 404 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 404 (656)
.+.+.+..+..+|....+.+++.|+++++.+..++ +..+++|++|++++|.+++++ ++.+++|++|++++|.+..
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~- 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK- 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC-
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe-
Confidence 44455555555666666677777777777776664 667777777777777777663 5667777777777774433
Q ss_pred CccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCc-cccccChhhhcCCCCCcEEEeeecCCCCcCCCccccc
Q 037310 405 LLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFT-RLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 483 (656)
+| ++.+++|++|++++|.+..+| ++.+++|++|++++| .+..++ ++.+++|++|++++|..
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l----------- 182 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI----------- 182 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC-----------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc-----------
Confidence 43 677777777777777776664 566667777777666 444442 55666677777766652
Q ss_pred CccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhC
Q 037310 484 GREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISY 555 (656)
Q Consensus 484 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~ 555 (656)
.. .+ +..+++|+.|+++.+..... . ......+ +.|++++|....++ +..+++|+.| ++++
T Consensus 183 -~~-l~--l~~l~~L~~L~l~~N~l~~~----~-l~~l~~L-~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 183 -TE-LD--VSQNKLLNRLNCDTNNITKL----D-LNQNIQL-TFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -CC-CC--CTTCTTCCEEECCSSCCSCC----C-CTTCTTC-SEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred -ce-ec--cccCCCCCEEECcCCcCCee----c-cccCCCC-CEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence 11 11 44555666666655543222 1 1112234 55556655554432 4444555555 5543
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.8e-18 Score=194.80 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=124.1
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|... ..++++|+++++.+..++ .+.++++|++|++++|.++.+++..+..+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 35666777777777643 378999999999988776 368899999999999999999888899999999999999954
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~ 472 (656)
....+..++++++|++|++++|.+..+|+ .++++++|++|++++|.+...++..++++++|++|++++|..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 44333469999999999999999998874 689999999999999988887766688999999999999873
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=5.2e-19 Score=196.61 Aligned_cols=294 Identities=15% Similarity=0.135 Sum_probs=194.3
Q ss_pred EEEEcCCC-CCCCCC-CCcccceeEeecchhh-Hhh--hcc-C------CCCCCcceEeccccCCcccch-hHHhcCCcc
Q 037310 325 FLVLAGVG-LQNAPG-IGLWKEVTRMSLMQIR-IRR--LLE-S------SSSPHLQTLFLGSNDLNEVNR-DFFQFMASL 391 (656)
Q Consensus 325 ~~~~~~~~-~~~~~~-~~~~~~~~~L~l~~~~-~~~--l~~-~------~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 391 (656)
.+...+.. ...+|. ...+.+++.|++++|. +.. +|. + ..+++|++|++++|.++.++. ..+..+++|
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L 332 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTC
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCC
Confidence 44444444 234443 4667899999999997 654 442 2 344899999999999987765 258899999
Q ss_pred cEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCC-CCeEecCCccccccChhhhcCCC--CCcEEEee
Q 037310 392 RVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVH-LKRLNLEFTRLTRIPQEVISNLK--MLRVLRMY 468 (656)
Q Consensus 392 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~l~~~~l~~l~--~L~~L~l~ 468 (656)
++|++++|.+.+.+| .++.+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|.. +..+. +|++|+++
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFS 410 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECC
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECc
Confidence 999999996666888 899999999999999999999999999998 99999999988888875 55544 78888888
Q ss_pred ecCCCCcCCCccc------------------ccCccccHH-HhhcCCCCcEEEEEecchhhhHhhhcC-cccc-------
Q 037310 469 ECGSDKQEGDSIL------------------IGGREVLVV-EILSLQHLNVLTVTLESFCALRMLLDS-PRLQ------- 521 (656)
Q Consensus 469 ~~~~~~~~~~~~~------------------~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~-~~~~------- 521 (656)
+|......+..+. .......+. .+..+++|+.|+++.+... .++.. ....
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT---EIPKNSLKDENENFKNT 487 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---BCCSSSSEETTEECTTG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---CcCHHHhcccccccccc
Confidence 8875332211111 000111222 2344677777777766543 22221 1111
Q ss_pred cccCCceeecccccceEEEecc--ccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccc
Q 037310 522 SLSTPSLCLKHCCQSELLVFNQ--RRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVM 598 (656)
Q Consensus 522 ~~ll~~L~l~~~~~~~~~~~~~--~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 598 (656)
..+ +.|++++|....++..+. .+++|+.| ++++.....+..+..+++|++|+|++|..+. ...+....|
T Consensus 488 ~~L-~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls-------~N~l~~~~p 559 (636)
T 4eco_A 488 YLL-TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ-------GNRTLREWP 559 (636)
T ss_dssp GGC-CEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTT-------CCBCCCCCC
T ss_pred CCc-cEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccc-------cCcccccCh
Confidence 145 777788777766555554 66777777 7776554544567778888888886544110 011122235
Q ss_pred cCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 599 HNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 599 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
..++.+++|++|++++|.- +.+|... +++|+.|
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~--~~~L~~L 592 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVL 592 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCC--CTTCCEE
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhH--hCcCCEE
Confidence 5778888999999988654 6666543 2555443
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=187.39 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=108.2
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~ 425 (656)
+.++++++.++.+|..-. ++|++|++++|.++.+++..|..+++|++|++++|.+....|..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 578899998888875332 8999999999999999888899999999999999977766688999999999999999999
Q ss_pred cccCccccCCCCCCeEecCCcccccc--ChhhhcCCCCCcEEEeeecCC
Q 037310 426 RRLPMELKYLVHLKRLNLEFTRLTRI--PQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 426 ~~lp~~~~~l~~L~~L~l~~~~~~~l--~~~~l~~l~~L~~L~l~~~~~ 472 (656)
..+|.. .+++|++|++++|.+..+ |.. ++++++|++|++++|..
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCccc
Confidence 999887 899999999999988864 455 89999999999999985
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=7.9e-19 Score=177.95 Aligned_cols=254 Identities=12% Similarity=0.050 Sum_probs=175.0
Q ss_pred eeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 345 VTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 345 ~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
+....++.+.+...+ -...+++|++|++++|.++.+++..+..+++|++|++++|.+... ++ ++.+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcC
Confidence 444455555554432 235677899999999999888888888999999999999855443 32 88899999999999
Q ss_pred CCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEE
Q 037310 423 SKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLT 502 (656)
Q Consensus 423 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 502 (656)
|.+..+|. .++|++|++++|.+..++.. .+++|++|++++|.. .......+..+++|+.|+
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l------------~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKI------------TMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCC------------CSGGGBCTGGGSSEEEEE
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCC------------CCccchhhhccCCCCEEE
Confidence 98887763 37888999988888887753 478888999888873 333344567788888888
Q ss_pred EEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchh
Q 037310 503 VTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 503 l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 581 (656)
++.+....... .........+ +.|++++|....++ ....+++|+.| ++++.-...++.+..+++|++|++++|..
T Consensus 151 Ls~N~l~~~~~-~~~~~~l~~L-~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l- 226 (317)
T 3o53_A 151 LKLNEIDTVNF-AELAASSDTL-EHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL- 226 (317)
T ss_dssp CTTSCCCEEEG-GGGGGGTTTC-CEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-
T ss_pred CCCCCCCcccH-HHHhhccCcC-CEEECCCCcCcccc-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-
Confidence 88765432211 0111122446 88888888877663 34457788888 87765544445677888899999888763
Q ss_pred hHHhcccccCCcCcccccCcccccccccccccCCcch-hhhcCCCCCCCChhHHHH
Q 037310 582 EEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNL-KSIHSSALPFPHLQSLRS 636 (656)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~~ 636 (656)
..+ |..+..+++|+.|++++++-. ..++.....+++|+.|..
T Consensus 227 ~~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 227 VLI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp CEE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 333 346778888888888887655 334433344555555543
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=188.36 Aligned_cols=139 Identities=24% Similarity=0.260 Sum_probs=100.2
Q ss_pred cEEEEcCCCCCCCC--CCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAP--GIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+..++..+..++ ....+++++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 34555555555443 3466778888888888877765 3678888888888888888888777888888888888888
Q ss_pred CCCccCccccCCcccCcEEeCCCCCCcc--cCccccCCCCCCeEecCCccccccChhhhcCCCCC
Q 037310 400 SLPGHLLTGISNLVSLQHLDPARSKIRR--LPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKML 462 (656)
Q Consensus 400 ~~~~~~p~~~~~L~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L 462 (656)
.+....+..++++++|++|++++|.+.. +|..++++++|++|++++|.+..+++..++.+++|
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 5444333368888888888888887774 67778888888888888877766654334433333
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-18 Score=181.98 Aligned_cols=249 Identities=16% Similarity=0.106 Sum_probs=191.0
Q ss_pred CCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 339 IGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
...+.+++.|+++++.+..++.+..+++|++|++++|.+++++ ++.+++|++|++++|.+.. +| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce-ee--cCCCCcCCEE
Confidence 3456789999999999998888899999999999999999985 7899999999999995544 44 8999999999
Q ss_pred eCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCC
Q 037310 419 DPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHL 498 (656)
Q Consensus 419 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 498 (656)
++++|.+..+| ++.+++|++|++++|.++.++ ++.+++|++|++++|.. .+.. .+..+++|
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~------------~~~~--~~~~l~~L 172 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK------------ITKL--DVTPQTQL 172 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSC------------CCCC--CCTTCTTC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCc------------cccc--ccccCCcC
Confidence 99999999986 899999999999999999985 77999999999999963 2221 47788999
Q ss_pred cEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeC
Q 037310 499 NVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISS 577 (656)
Q Consensus 499 ~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~ 577 (656)
+.|+++.+....+ + ......+ +.|++++|....+ .+..+++|+.| ++++.. ..++ +..+++|++|++++
T Consensus 173 ~~L~ls~n~l~~l---~--l~~l~~L-~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l-~~ip-~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITEL---D--VSQNKLL-NRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL-TEID-VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCCC---C--CTTCTTC-CEEECCSSCCSCC--CCTTCTTCSEEECCSSCC-SCCC-CTTCTTCSEEECCS
T ss_pred CEEECCCCcccee---c--cccCCCC-CEEECcCCcCCee--ccccCCCCCEEECcCCcc-cccC-ccccCCCCEEEeeC
Confidence 9999998865443 2 2233446 9999999987765 46677899999 888644 4455 77899999999998
Q ss_pred CchhhHHhccccc---------CCcCcc--------cccCcccccccccccccCCcchhhhcC
Q 037310 578 CLDLEEIISVEKL---------GEVSPE--------VMHNLIPLARIEYLILEDLKNLKSIHS 623 (656)
Q Consensus 578 ~~~~~~~~~~~~~---------~~~~~~--------~~~~~~~~~~L~~L~l~~~~~l~~i~~ 623 (656)
|.... .+..... ..+..+ .....+.|++|+.|++++|+.++.++.
T Consensus 243 N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 243 NPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 86432 2211000 000000 001234678888888888877777764
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=6.8e-18 Score=185.37 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=112.3
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
..+.++++++.++.+|... .+++++|++++|.++.+++..|..+++|++|++++|.+....|..++++++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 4488999999998887532 389999999999999999888999999999999999777777888999999999999999
Q ss_pred CCcccCccccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCC
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~ 472 (656)
.+..+|.. .+++|++|++++|.+..++. ..++++++|++|++++|..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 99999987 89999999999999988762 3499999999999999984
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=7e-19 Score=178.30 Aligned_cols=243 Identities=16% Similarity=0.071 Sum_probs=193.4
Q ss_pred ccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 342 WKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
.++++.|+++++.+..++ .+..+++|++|++++|.+++.++ +..+++|++|++++|. ...+| ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 358999999999988775 56899999999999999988765 8899999999999994 44343 348999999
Q ss_pred CCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHh-hcCCCC
Q 037310 420 PARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEI-LSLQHL 498 (656)
Q Consensus 420 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L 498 (656)
+++|.+..++.. .+++|++|++++|.+..+++..++.+++|++|++++|.. ....+..+ ..+++|
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------DTVNFAELAASSDTL 171 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC------------CEEEGGGGGGGTTTC
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC------------CcccHHHHhhccCcC
Confidence 999999988753 478999999999999998876588899999999999983 44445555 478999
Q ss_pred cEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeC
Q 037310 499 NVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISS 577 (656)
Q Consensus 499 ~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~ 577 (656)
+.|+++++..... +.... ...+ +.|++++|....+++.+..+++|+.| ++++.....+..+..+++|++|++++
T Consensus 172 ~~L~L~~N~l~~~---~~~~~-l~~L-~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 172 EHLNLQYNFIYDV---KGQVV-FAKL-KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CEEECTTSCCCEE---ECCCC-CTTC-CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred CEEECCCCcCccc---ccccc-cccC-CEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 9999998865443 22222 4456 99999999988887778888899999 98875544445678899999999999
Q ss_pred CchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhc
Q 037310 578 CLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIH 622 (656)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 622 (656)
|........ ..+..+++|+.|.+.+++.++...
T Consensus 247 N~~~~~~~~------------~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 247 NGFHCGTLR------------DFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCCBHHHHH------------HHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CCccCcCHH------------HHHhccccceEEECCCchhccCCc
Confidence 986623222 367789999999999877776543
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.7e-18 Score=195.02 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=125.3
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~ 425 (656)
+.++.++..++.+|... .+++++|++++|.++.+++..|..+++|++|++++|.+....|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45667777777777432 37999999999999999988899999999999999977777788899999999999999999
Q ss_pred cccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 426 RRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 426 ~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
..+|+ .+.++++|++|++++|.+..+++..++++++|++|++++|.. ....+..+.++++|+.|+++
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL------------SSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC------------SCCCCCSSSCCTTCCEEECC
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc------------cccCchhhcccccCCEEEcc
Confidence 99998 499999999999999999999876699999999999999984 33334445667777777776
Q ss_pred ecc
Q 037310 505 LES 507 (656)
Q Consensus 505 ~~~ 507 (656)
.+.
T Consensus 154 ~n~ 156 (680)
T 1ziw_A 154 NNK 156 (680)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=177.55 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=193.2
Q ss_pred eeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 345 VTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 345 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
...+...+..++.+|.. -.++++.|++++|.++.+++..|..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 44666666777777643 23789999999999999988889999999999999997766667889999999999999999
Q ss_pred CcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 425 IRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 425 ~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
+..+|. .+..+++|++|++++|.+..++...+.++++|++|++++|.. ........+..+++|+.|++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~-----------l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR-----------LSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------CCEECTTTTTTCSSCCEEEC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC-----------cceeCcchhhcccccCeecC
Confidence 999987 489999999999999999999987799999999999999763 23333446888999999999
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCCCCCc-cccccCCCccEEEEeCCch
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSKLKHL-TWLIVAPNLKHVRISSCLD 580 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 580 (656)
+.+.... ++.. .....+ +.|++++|....+. ..+..+++|+.| +.++...... ..+..+++|++|+|++|..
T Consensus 193 ~~n~l~~---~~~~-~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 193 AMCNLRE---IPNL-TPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp TTSCCSS---CCCC-TTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCcCcc---cccc-CCCccc-CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 9886543 3332 233446 99999999887753 356777899999 8886443332 3577899999999999864
Q ss_pred hhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 581 LEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
..++. ..+..+++|+.|++.+++
T Consensus 268 -~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 -TLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred -CccCh------------hHhccccCCCEEEcCCCC
Confidence 33322 467889999999998765
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=175.87 Aligned_cols=262 Identities=18% Similarity=0.124 Sum_probs=191.5
Q ss_pred eecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcc
Q 037310 348 MSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRR 427 (656)
Q Consensus 348 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~ 427 (656)
.+.+++.++.+|.. -.++|++|++++|.++.+++..+..+++|++|++++|.+....|..++++++|++|++++|.+..
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 56677777777742 23699999999999999988779999999999999997666667789999999999999999999
Q ss_pred cCcc-ccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEe
Q 037310 428 LPME-LKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTL 505 (656)
Q Consensus 428 lp~~-~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 505 (656)
+|.. +.++++|++|++++|.+..+|. ..++.+++|++|++++|.. .....+..+..+++|+.|+++.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~-----------~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-----------FTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-----------CCEECTTTTTTCCEEEEEEEEE
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc-----------ccccCHHHccCCCCCCEEECCC
Confidence 9887 8999999999999999999987 4588999999999999952 2334456788899999999998
Q ss_pred cchhhhHhhhcCcccccccCCceeecccccceEEEe-ccccccHHHH-HHhCCCCCCc----cccccCCCccEEEEeCCc
Q 037310 506 ESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVF-NQRRSLLQNI-CISYSKLKHL----TWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~-~~~~~~L~~L-l~~~~~~~~~----~~l~~l~~L~~L~l~~~~ 579 (656)
+..... .+........+ +.|++++|....++.. ...+++|+.| ++++...... +.....+.++.++++++.
T Consensus 184 n~l~~~--~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 184 SDLQSY--EPKSLKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTCCEE--CTTTTTTCSEE-EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCcCcc--CHHHHhccccC-CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 864322 12233334456 8888988876543322 2235677777 7765432221 122346678888888776
Q ss_pred hhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCC-CCCCChhHH
Q 037310 580 DLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSA-LPFPHLQSL 634 (656)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L 634 (656)
....... . .|..+..+++|+.|+++++ +++.++... ..+++|+.|
T Consensus 261 l~~~~l~--------~-l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 261 ITDESLF--------Q-VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp CCHHHHH--------H-HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccCcchh--------h-hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEE
Confidence 4332111 0 0335778999999999996 556676653 456666644
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=5.7e-18 Score=170.87 Aligned_cols=239 Identities=20% Similarity=0.121 Sum_probs=189.6
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccc--hhHHhcCCcccEEEccCCCC
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVN--RDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~ 401 (656)
+.+.+.....+|.. ...++++|+++++.+..++. +.++++|++|++++|.++... +..+..+++|++|++++| .
T Consensus 12 l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~ 89 (306)
T 2z66_A 12 IRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 89 (306)
T ss_dssp EECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-S
T ss_pred EEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-c
Confidence 45566667777763 34689999999999998875 689999999999999988653 344778999999999999 5
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccCc--cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCc
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLPM--ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDS 479 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 479 (656)
...+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+...++..+..+++|++|++++|..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------- 162 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------- 162 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE-------
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc-------
Confidence 56688889999999999999999998875 689999999999999988887776688999999999999983
Q ss_pred ccccCcc-ccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCC
Q 037310 480 ILIGGRE-VLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYS 556 (656)
Q Consensus 480 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~ 556 (656)
.. ..+..+..+++|+.|+++++...... +........+ +.|++++|....+.. .+..+++|+.| ++++.
T Consensus 163 -----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 163 -----QENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSL-QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp -----GGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTC-CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred -----ccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCC-CEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 22 35567888999999999987643321 2233334457 999999998877543 45667899999 98875
Q ss_pred CCCCcc-ccccCC-CccEEEEeCCchh
Q 037310 557 KLKHLT-WLIVAP-NLKHVRISSCLDL 581 (656)
Q Consensus 557 ~~~~~~-~l~~l~-~L~~L~l~~~~~~ 581 (656)
....++ .+..++ +|++|++++|+..
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCee
Confidence 544443 566774 9999999998753
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.2e-17 Score=178.24 Aligned_cols=242 Identities=15% Similarity=0.118 Sum_probs=192.0
Q ss_pred eeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 345 VTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 345 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
...+...+..++.+|.. -.+++++|++++|.++.+++..|..+++|++|++++|.+....|..++++++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34566666667766632 23689999999999999988889999999999999997777677889999999999999999
Q ss_pred CcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 425 IRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 425 ~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
+..+|.. +..+++|++|++++|.+..+|...+.++++|++|++++|.. ........+..+++|+.|++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-----------LEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------CCEECTTTTTTCTTCCEEEC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-----------ccccChhhccCCCCCCEEEC
Confidence 9999875 88999999999999999999987799999999999999763 22233445788999999999
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCCCCCc-cccccCCCccEEEEeCCch
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSKLKHL-TWLIVAPNLKHVRISSCLD 580 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 580 (656)
+.+....+ +.. .....+ +.|++++|....+. ..+..+++|+.| +.++...... ..+..+++|++|+|++|..
T Consensus 204 ~~n~l~~~---~~~-~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 204 GMCNIKDM---PNL-TPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp TTSCCSSC---CCC-TTCTTC-CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccc---ccc-cccccc-cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 98865433 322 233446 99999999988764 356777889999 8886543332 3577899999999999863
Q ss_pred hhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 581 LEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
..++. ..+..+++|+.|++.+++
T Consensus 279 -~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 -SSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -SCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred -CccCh------------HHhccccCCCEEEccCCC
Confidence 43322 467789999999998865
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.6e-18 Score=183.29 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=157.2
Q ss_pred CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeE
Q 037310 362 SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRL 441 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 441 (656)
..+++|++|++++|.++.+++..|..+++|++|++++|.+....| ++.+++|++|++++|.+..+|.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 455678888888888888777778888888888888885444333 78888888888888877776643 778888
Q ss_pred ecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccc
Q 037310 442 NLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQ 521 (656)
Q Consensus 442 ~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 521 (656)
++++|.+..++.. .+++|++|++++|.. ....+..++.+++|+.|+++++....... ..+....
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKI------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASS 168 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCC------------CSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGT
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCC------------CCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhC
Confidence 8888877777653 567788888888873 33444556677788888887665432110 0111122
Q ss_pred cccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccC
Q 037310 522 SLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHN 600 (656)
Q Consensus 522 ~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (656)
..+ +.|++++|....+ +....+++|+.| ++++.....++.+..+++|+.|+|++|... .+ |..
T Consensus 169 ~~L-~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~l-------------p~~ 232 (487)
T 3oja_A 169 DTL-EHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LI-------------EKA 232 (487)
T ss_dssp TTC-CEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EE-------------CTT
T ss_pred Ccc-cEEecCCCccccc-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-cc-------------chh
Confidence 345 7888888876665 334456778888 777655445556777888888888887633 23 345
Q ss_pred cccccccccccccCCcch-hhhcCCCCCCCChhHHHH
Q 037310 601 LIPLARIEYLILEDLKNL-KSIHSSALPFPHLQSLRS 636 (656)
Q Consensus 601 ~~~~~~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~~ 636 (656)
++.+++|+.|++.+++-. ..++.....+++|+.|..
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 677888888888876654 333333334555555544
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=7.6e-18 Score=168.05 Aligned_cols=216 Identities=21% Similarity=0.174 Sum_probs=135.8
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCC-CC
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGS-LP 402 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 402 (656)
+.+.+.....+|. ....+++.|+++++.+..++ .+..+++|++|++++|.++.+.+..+..+++|++|++++|. ..
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 4445555555554 23457777777777776665 35677777777777777777766667777777777777775 33
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccC-ccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccc
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLP-MELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSIL 481 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 481 (656)
...|..+..+++|++|++++|.+..++ ..+.++++|++|++++|.+..++...++.+++|++|++++|..
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------- 165 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--------- 165 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---------
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc---------
Confidence 333566777777777777777777663 4467777777777777777777765567777777777777762
Q ss_pred ccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceE-EEeccccccHHHH-HHhCCCCC
Q 037310 482 IGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSEL-LVFNQRRSLLQNI-CISYSKLK 559 (656)
Q Consensus 482 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~-~~~~~~~~~L~~L-l~~~~~~~ 559 (656)
.......+..+++|+.|+++.+.. ..+ +..+..+++|+.| ++++....
T Consensus 166 ---~~~~~~~~~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 166 ---SSVPERAFRGLHSLDRLLLHQNRV---------------------------AHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp ---CEECTTTTTTCTTCCEEECCSSCC---------------------------CEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---cccCHHHhcCccccCEEECCCCcc---------------------------cccCHhHccCcccccEeeCCCCcCCc
Confidence 222233455666666666665542 221 1122233344444 44432222
Q ss_pred Ccc-ccccCCCccEEEEeCCchh
Q 037310 560 HLT-WLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 560 ~~~-~l~~l~~L~~L~l~~~~~~ 581 (656)
.++ .+..+++|++|++++|+..
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCHHHcccCcccCEEeccCCCcc
Confidence 222 3667889999999887653
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=1.1e-17 Score=183.50 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=100.0
Q ss_pred cEEEEcCCCCCCCC--CCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAP--GIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+...+..+..++ ....+.+++.|+++++.+..++ .+.++++|++|++++|.++++++..+..+++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 34555555555442 3467789999999999888775 4788999999999999999999888999999999999999
Q ss_pred CCCc-cCccccCCcccCcEEeCCCCC-CcccCc-cccCCCCCCeEecCCcccccc
Q 037310 400 SLPG-HLLTGISNLVSLQHLDPARSK-IRRLPM-ELKYLVHLKRLNLEFTRLTRI 451 (656)
Q Consensus 400 ~~~~-~~p~~~~~L~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~~~~~~l 451 (656)
.+.. ..|..++++++|++|++++|. +..+|. .+.++++|++|++++|.+...
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 6554 356778889999999998887 566663 577778888888877766653
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.7e-18 Score=183.16 Aligned_cols=234 Identities=16% Similarity=0.065 Sum_probs=188.7
Q ss_pred ccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 342 WKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
.++++.|+++++.+..++ .+..+++|++|++++|.+++.++ +..+++|++|++++|. ...+| ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEEE
Confidence 458999999999988775 57899999999999999988776 8899999999999994 44444 238999999
Q ss_pred CCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhh-cCCCC
Q 037310 420 PARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEIL-SLQHL 498 (656)
Q Consensus 420 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L 498 (656)
+++|.+..+|. ..+++|++|++++|.+..+++..++.+++|++|++++|.. ....+..+. .+++|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------DTVNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC------------CEEEGGGGGGGTTTC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC------------CCcChHHHhhhCCcc
Confidence 99999998876 3578999999999999988765588999999999999983 555566665 78999
Q ss_pred cEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeC
Q 037310 499 NVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISS 577 (656)
Q Consensus 499 ~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~ 577 (656)
+.|+++++..... +... ....+ +.|++++|....+++.+..+++|+.| ++++.....++.+..+++|+.|++++
T Consensus 172 ~~L~Ls~N~l~~~---~~~~-~l~~L-~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 172 EHLNLQYNFIYDV---KGQV-VFAKL-KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CEEECTTSCCCEE---ECCC-CCTTC-CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cEEecCCCccccc---cccc-cCCCC-CEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 9999998865443 2222 24456 99999999988887778888899999 98876555555788899999999999
Q ss_pred CchhhHHhcccccCCcCcccccCccccccccccccc
Q 037310 578 CLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILE 613 (656)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 613 (656)
|........ ..+..+++|+.+.+.
T Consensus 247 N~l~c~~~~------------~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLR------------DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHH------------HHHTTCHHHHHHHHH
T ss_pred CCCcCcchH------------HHHHhCCCCcEEecc
Confidence 986522222 356778888888875
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=3e-17 Score=163.75 Aligned_cols=220 Identities=18% Similarity=0.153 Sum_probs=163.1
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC-
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK- 424 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~- 424 (656)
+.++..+..++.+|. .-.+++++|++++|.++.+++..|..+++|++|++++|.+....|..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 456666666766653 235789999999999999888778999999999999996666667889999999999999996
Q ss_pred Cccc-CccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 425 IRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 425 ~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
+..+ |..+..+++|++|++++|.+..+++..+..+++|++|++++|.. .......+..+++|+.|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL------------QALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEEC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc------------cccCHhHhccCCCccEEEC
Confidence 8877 55688999999999999988888766688899999999999883 2333344666777777777
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccHHHH-HHhCCCCCC-ccccccCCCccEEEEeCCch
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLLQNI-CISYSKLKH-LTWLIVAPNLKHVRISSCLD 580 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L~~L-l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 580 (656)
+++.. ..++. .+..+++|+.| ++++..... +..+..+++|++|++++|..
T Consensus 161 ~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 161 HGNRI---------------------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CSSCC---------------------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcc---------------------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 65532 22111 13334566666 766543333 34677899999999999864
Q ss_pred hhHHhcccccCCcCcccccCcccccccccccccCCcch
Q 037310 581 LEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNL 618 (656)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 618 (656)
. .++. ..+..+++|+.|++++++-.
T Consensus 214 ~-~~~~------------~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 214 S-ALPT------------EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp S-CCCH------------HHHTTCTTCCEEECCSSCEE
T ss_pred C-cCCH------------HHcccCcccCEEeccCCCcc
Confidence 3 3322 35788999999999987543
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=6.2e-17 Score=160.61 Aligned_cols=144 Identities=24% Similarity=0.269 Sum_probs=91.6
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+.+.....+|.. ....++.|+++++.+..++ .+.++++|++|++++|.++.+++..+..+++|++|++++|.+..
T Consensus 12 ~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 34445555555542 2245677777777666554 45666777777777776666666556667777777777775544
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccc--cChhhhcCCCCCcEEEeeecC
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTR--IPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--l~~~~l~~l~~L~~L~l~~~~ 471 (656)
..+..++++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|.. ++.+++|++|++++|.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCC
Confidence 445566677777777777776666654 46666777777777776665 3443 6667777777777666
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=189.16 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=122.0
Q ss_pred cEEEEcCCCCCCC--CCCCcccceeEeecchhh-Hhhh-c-cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccC
Q 037310 324 KFLVLAGVGLQNA--PGIGLWKEVTRMSLMQIR-IRRL-L-ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSD 398 (656)
Q Consensus 324 ~~~~~~~~~~~~~--~~~~~~~~~~~L~l~~~~-~~~l-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 398 (656)
..+.++...+..+ .....+.+++.|+++++. ...+ + .+.++++|++|++++|.+..+.+..|..+++|++|++++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 4556666666544 245778899999999994 4444 2 578999999999999999999888899999999999999
Q ss_pred CCCCccCccc--cCCcccCcEEeCCCCCCcccC--ccccCCCCCCeEecCCccccccChhhhcCC--CCCcEEEeeecCC
Q 037310 399 GSLPGHLLTG--ISNLVSLQHLDPARSKIRRLP--MELKYLVHLKRLNLEFTRLTRIPQEVISNL--KMLRVLRMYECGS 472 (656)
Q Consensus 399 ~~~~~~~p~~--~~~L~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l--~~L~~L~l~~~~~ 472 (656)
|.+....|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+..+.+..+..+ ++|+.|++++|..
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 9777666655 999999999999999998763 469999999999999998877655446666 7888888888874
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=2.4e-16 Score=155.79 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=128.5
Q ss_pred CCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 339 IGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
...+.+++.|.+.++.+..++.+..+++|++|++++|.+++++ .+..+++|++|++++|.+....+..++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3445667777777777777777777778888888887777653 36777788888888775554444556777888888
Q ss_pred eCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCC
Q 037310 419 DPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQH 497 (656)
Q Consensus 419 ~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 497 (656)
++++|.+..+|+. +..+++|++|++++|.++.+++..++.+++|++|++++|.. .......++.+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL------------QSLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc------------CccCHHHhcCCcc
Confidence 8888877777654 67777888888887777777776567777888888887763 2333344567777
Q ss_pred CcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCC
Q 037310 498 LNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYS 556 (656)
Q Consensus 498 L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~ 556 (656)
|+.|+++.+....... ........+ +.|++++|... ..+++|+.| +..+.
T Consensus 183 L~~L~L~~N~l~~~~~--~~~~~l~~L-~~L~l~~N~~~------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPD--GVFDRLTSL-QYIWLHDNPWD------CTCPGIRYLSEWINK 233 (272)
T ss_dssp CCEEECCSSCCSCCCT--TTTTTCTTC-CEEECCSSCBC------CCTTTTHHHHHHHHH
T ss_pred CCEEECCCCcCCccCH--HHHhCCcCC-CEEEccCCCcc------ccCcHHHHHHHHHHh
Confidence 7777777665332111 112223345 67777766432 334567777 55543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.8e-18 Score=173.41 Aligned_cols=243 Identities=14% Similarity=0.036 Sum_probs=170.1
Q ss_pred cceeEeecchhhHhhhcc-CCCCCCcceEeccccCCccc-chhHHh-------cCCcccEEEccCCCCCccCcccc--CC
Q 037310 343 KEVTRMSLMQIRIRRLLE-SSSSPHLQTLFLGSNDLNEV-NRDFFQ-------FMASLRVLTLSDGSLPGHLLTGI--SN 411 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~~~~~p~~~--~~ 411 (656)
.+++.+.+.++.+ .+|. +.. .++.|++++|.+... .+..+. .+++|++|++++|.+.+..|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4566677777766 4442 222 288889998887542 222233 68999999999997777788776 89
Q ss_pred cccCcEEeCCCCCCcccCccccCC-----CCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCcc
Q 037310 412 LVSLQHLDPARSKIRRLPMELKYL-----VHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGRE 486 (656)
Q Consensus 412 L~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 486 (656)
+++|++|++++|.+..+|..+..+ ++|++|++++|.+..+++..++++++|++|++++|.. ....
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~ 189 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE----------LGER 189 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT----------CHHH
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc----------Ccch
Confidence 999999999999998888777776 8999999999999988866689999999999999973 0111
Q ss_pred ccHHHh--hcCCCCcEEEEEecchhhhHhhhc-CcccccccCCceeecccccceEE--EeccccccHHHH-HHhCCCCCC
Q 037310 487 VLVVEI--LSLQHLNVLTVTLESFCALRMLLD-SPRLQSLSTPSLCLKHCCQSELL--VFNQRRSLLQNI-CISYSKLKH 560 (656)
Q Consensus 487 ~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~-~~~~~~~ll~~L~l~~~~~~~~~--~~~~~~~~L~~L-l~~~~~~~~ 560 (656)
..+..+ ..+++|+.|+++.+.......++. .......+ +.|++++|...... .....+++|+.| ++++.-...
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 234455 788999999999887654333321 11223446 88899988776633 234445678888 777654333
Q ss_pred ccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 561 LTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 561 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
+..+. ++|++|++++|.. +.+ | .+..+++|++|++++++
T Consensus 269 p~~~~--~~L~~L~Ls~N~l-~~~-------------p-~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRL-DRN-------------P-SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSSCC--SEEEEEECCSSCC-CSC-------------C-CTTTSCEEEEEECTTCT
T ss_pred hhhcc--CCceEEECCCCCC-CCC-------------h-hHhhCCCCCEEeccCCC
Confidence 33443 7888888888763 322 2 36678888888888743
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=2.5e-16 Score=172.53 Aligned_cols=244 Identities=18% Similarity=0.107 Sum_probs=139.4
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+.+.+.....+|.... ++++.|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++++| ...
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLT 114 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCC
Confidence 345556666666665333 677788888777777665 56778888888877777664 5677777777777 344
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcc---
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI--- 480 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--- 480 (656)
.+|. .+++|++|++++|++..+|.. +++|++|++++|.+..+|. .+.+|+.|++++|...... ...
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~-~~~~~L 183 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-MLPSGL 183 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC-CCCTTC
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc-ccCCCC
Confidence 4554 456677777777777777653 3667777777776666654 2344555555544421000 000
Q ss_pred -----ccc-CccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HH
Q 037310 481 -----LIG-GREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CI 553 (656)
Q Consensus 481 -----~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~ 553 (656)
... ... .+ ..+++|+.|++.++.... ++ .....+ +.|++++|....++ ..+++|+.| ++
T Consensus 184 ~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~---l~---~~~~~L-~~L~Ls~N~L~~lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 184 QELSVSDNQLAS-LP---TLPSELYKLWAYNNRLTS---LP---ALPSGL-KELIVSGNRLTSLP---VLPSELKELMVS 249 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSS---CC---CCCTTC-CEEECCSSCCSCCC---CCCTTCCEEECC
T ss_pred cEEECCCCCCCC-CC---CccchhhEEECcCCcccc---cC---CCCCCC-CEEEccCCccCcCC---CCCCcCcEEECC
Confidence 000 000 00 012445555555443221 11 112335 66777766555443 344567777 66
Q ss_pred hCCCCCCccccccCCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcc
Q 037310 554 SYSKLKHLTWLIVAPNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKN 617 (656)
Q Consensus 554 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 617 (656)
++ .+..++. .+++|++|+|++|.. ..+ |..+..+++|+.|++++++-
T Consensus 250 ~N-~L~~lp~--~~~~L~~L~Ls~N~L-~~l-------------p~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 250 GN-RLTSLPM--LPSGLLSLSVYRNQL-TRL-------------PESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCC-CSC-------------CGGGGGSCTTCEEECCSCCC
T ss_pred CC-CCCcCCc--ccccCcEEeCCCCCC-CcC-------------CHHHhhccccCEEEecCCCC
Confidence 64 3334443 467777777777653 333 34677888888888887653
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=7.5e-16 Score=155.12 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=136.7
Q ss_pred CcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 340 GLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
..+.+++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|. ...++ .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 4456788888888888777777788888888888888888776 7888888888888884 44444 688888888888
Q ss_pred CCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCc
Q 037310 420 PARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLN 499 (656)
Q Consensus 420 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 499 (656)
+++|.+..+|. +..+++|++|++++|.+..++. ++.+++|++|++++|.. ... . .+..+++|+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l------------~~~-~-~l~~l~~L~ 176 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV------------SDL-T-PLANLSKLT 176 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC------------CCC-G-GGTTCTTCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC------------CCC-h-hhcCCCCCC
Confidence 88888887765 7888888888888888888776 77888888888888873 211 1 167777888
Q ss_pred EEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHHHHhCCCCCCccccccCCCccEEEEeCCc
Q 037310 500 VLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 500 ~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
.|+++.+....... ......+ +.|++++|. +..++.+..+++|++|++++|.
T Consensus 177 ~L~l~~n~l~~~~~----l~~l~~L-~~L~L~~N~-----------------------l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISDISP----LASLPNL-IEVHLKNNQ-----------------------ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCCGG----GGGCTTC-CEEECTTSC-----------------------CCBCGGGTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCcChh----hcCCCCC-CEEEccCCc-----------------------cCccccccCCCCCCEEEccCCe
Confidence 88877665432222 1112223 444544443 2233346678888888888876
Q ss_pred h
Q 037310 580 D 580 (656)
Q Consensus 580 ~ 580 (656)
.
T Consensus 229 i 229 (308)
T 1h6u_A 229 I 229 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1e-15 Score=151.20 Aligned_cols=195 Identities=20% Similarity=0.261 Sum_probs=142.1
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
..+.+.+.....+|... ...++.|+++++.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 34556666666666532 367888888888887776 467888888888888888888887778888888888888855
Q ss_pred CccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcc
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSI 480 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 480 (656)
....+..+..+++|++|++++|.+..+|+. +..+++|++|++++|.+..+|...+..+++|++|++++|..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------- 169 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-------- 169 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC--------
Confidence 544455678888888888888888877654 68888888888888888888877678888888888888873
Q ss_pred cccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccc
Q 037310 481 LIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCC 534 (656)
Q Consensus 481 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~ 534 (656)
.......+..+++|+.|+++.+....... ........+ +.|++++|.
T Consensus 170 ----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L-~~L~l~~N~ 216 (270)
T 2o6q_A 170 ----KRVPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKL-KMLQLQENP 216 (270)
T ss_dssp ----SCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTC-CEEECCSSC
T ss_pred ----cEeChhHhccCCCcCEEECCCCcCCcCCH--HHhccccCC-CEEEecCCC
Confidence 33334456778888888888775432211 112223345 777777764
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1e-15 Score=151.29 Aligned_cols=173 Identities=20% Similarity=0.317 Sum_probs=151.1
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+...+..+..++....+++++.|+++++.+..++.+..+++|++|++++|.++.+++..+..+++|++|++++|.+..
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc
Confidence 34556666777778888889999999999999988889999999999999999999998888999999999999997666
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccc
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILI 482 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 482 (656)
..+..++.+++|++|++++|.+..+|+. +..+++|++|++++|.++.+++..++.+++|++|++++|..
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l---------- 193 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL---------- 193 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----------
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC----------
Confidence 5566689999999999999999988875 68999999999999999999987678999999999999983
Q ss_pred cCccccHHHhhcCCCCcEEEEEecch
Q 037310 483 GGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 483 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
....+..+..+++|+.|+++.++.
T Consensus 194 --~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 --KSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp --SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --CccCHHHHhCCcCCCEEEccCCCc
Confidence 344445678899999999997753
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=2.7e-16 Score=175.51 Aligned_cols=147 Identities=23% Similarity=0.245 Sum_probs=123.8
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.+...+|.. -...+++|++++|.++.++ .+.++++|++|++++|.++.++++.|..+++|++|+|++|.+.
T Consensus 35 ~~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 345666677777753 2357999999999999887 5789999999999999999999988999999999999999655
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCcccccc--ChhhhcCCCCCcEEEeeecCCC
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRI--PQEVISNLKMLRVLRMYECGSD 473 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l--~~~~l~~l~~L~~L~l~~~~~~ 473 (656)
...+..|+++++|++|++++|++..+|+. ++++++|++|++++|.+..+ |.. ++.+++|++|++++|...
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccc
Confidence 54456789999999999999999998874 89999999999999988754 444 788999999999988653
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=3.4e-15 Score=145.71 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=115.8
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.....+|... ...++.|+++++.+..++ .+.++++|++|++++|.++.+++..+..+++|++|++++|.+.
T Consensus 18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 4555666666666532 256777777777776654 3567777777777777777777766777777777777777555
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccc
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSIL 481 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 481 (656)
...+..++.+++|++|++++|.+..+|+. +..+++|++|++++|.++.+|+..++.+++|++|++++|..
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------- 167 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL--------- 167 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---------
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC---------
Confidence 44445567777777777777777777665 56777777777777777777765577777777777777762
Q ss_pred ccCccccHHHhhcCCCCcEEEEEecc
Q 037310 482 IGGREVLVVEILSLQHLNVLTVTLES 507 (656)
Q Consensus 482 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 507 (656)
.......+..+++|+.|++++++
T Consensus 168 ---~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 ---QSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---SCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---CccCHHHHhCCCCCCEEEeeCCc
Confidence 23333456666777777776654
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=8.4e-16 Score=163.22 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=75.3
Q ss_pred cceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 343 KEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
.+++.|++++|.++.+|.+.++++|++|++++|.++.++.. ..+|++|++++|.+. .+| .++.+++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCC-cCc-cccCCCCCCEEECCC
Confidence 46667777777666666666677777777777766665432 346777777766333 355 466777777777777
Q ss_pred CCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 423 SKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 423 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
|.+..+|... .+|++|++++|.+..+|. ++.+++|++|++++|.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNL 248 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSC
T ss_pred CcCCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCc
Confidence 7666665432 466666666666666663 6666667777766665
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4.5e-16 Score=155.10 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=68.4
Q ss_pred cceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 343 KEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
.+++.+++.++.++.+|... .+++++|++++|.++.+++..|..+++|++|++++|. ...++. .+.+++|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-CCCCCcCCEEECCC
Confidence 34555555555555544221 2455556666655555555555555666666665553 222332 25555566666666
Q ss_pred CCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 423 SKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 423 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
|.+..+|..+..+++|++|++++|+++.+|+..+..+++|++|++++|.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 5555555555555556666666555555554445555556666665555
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1e-15 Score=151.70 Aligned_cols=143 Identities=20% Similarity=0.159 Sum_probs=119.5
Q ss_pred hhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccC-cc
Q 037310 353 IRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLP-ME 431 (656)
Q Consensus 353 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp-~~ 431 (656)
..+..+|.. -.+++++|++++|.++.+++..+..+++|++|++++|.+....+..++.+++|++|++++|.+..++ ..
T Consensus 17 ~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 344445432 1357999999999999998877999999999999999666655668999999999999999999877 46
Q ss_pred ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCcc-ccHHHhhcCCCCcEEEEEecch
Q 037310 432 LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGRE-VLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 432 ~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
+.++++|++|++++|.+..++...++.+++|++|++++|.. .. ..+..+..+++|+.|+++++..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI------------QSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC------------CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcc------------ceecCchhhccCCCCCEEECCCCCC
Confidence 89999999999999999988875588999999999999983 22 2466788999999999998754
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=1.8e-15 Score=168.77 Aligned_cols=136 Identities=24% Similarity=0.247 Sum_probs=115.9
Q ss_pred ccccEEEEcCCCCCCCCC--CCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEc
Q 037310 321 EKEKFLVLAGVGLQNAPG--IGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTL 396 (656)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 396 (656)
..-..+..+...+..++. ...+.+++.|++++|.++.++ .+.++++|++|++++|.++.+++..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 344567778888887764 567889999999999999886 4789999999999999999999998999999999999
Q ss_pred cCCCCCccCccccCCcccCcEEeCCCCCCcc--cCccccCCCCCCeEecCCccccccChhhh
Q 037310 397 SDGSLPGHLLTGISNLVSLQHLDPARSKIRR--LPMELKYLVHLKRLNLEFTRLTRIPQEVI 456 (656)
Q Consensus 397 ~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~l~~~~l 456 (656)
++|.+....+..++++++|++|++++|.+.. +|..+..+++|++|++++|.++.+++..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 9996655555579999999999999999874 57788999999999999998877665433
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=9.1e-15 Score=144.32 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=147.7
Q ss_pred cEEEEcCCCCCCCCC--CCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCC
Q 037310 324 KFLVLAGVGLQNAPG--IGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDG 399 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 399 (656)
..+.+.+..+..++. ...+.+++.|+++++.+..++. +.++++|++|++++|.+..+++..+..+++|++|++++|
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 455666666666654 5678899999999999988874 478999999999999999999888899999999999999
Q ss_pred CCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCC
Q 037310 400 SLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGD 478 (656)
Q Consensus 400 ~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~ 478 (656)
.+....+..++.+++|++|++++|.+..+|.. +..+++|++|++++|.+..++...+..+++|++|++++|..
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l------ 193 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL------ 193 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC------
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC------
Confidence 76666667789999999999999999999876 78999999999999999999987788999999999999983
Q ss_pred cccccCccccHHHhhcCCCCcEEEEEecc
Q 037310 479 SILIGGREVLVVEILSLQHLNVLTVTLES 507 (656)
Q Consensus 479 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 507 (656)
.......+..+++|+.|++++++
T Consensus 194 ------~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 ------KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ------SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------CcCCHHHhccccCCCEEEecCCC
Confidence 33334457788999999999775
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=6.1e-15 Score=146.90 Aligned_cols=191 Identities=20% Similarity=0.146 Sum_probs=154.6
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.....+|... ...++.|+++++.+..++ .+..+++|++|++++|.++.+++. ..+++|++|++++| ..
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N-~l 89 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN-QL 89 (290)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-CC
T ss_pred EEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-cC
Confidence 4556666777777543 378999999999988775 578999999999999999988763 78999999999999 55
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccc
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSIL 481 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 481 (656)
..+|..+..+++|++|++++|.+..+|+ .+..+++|++|++++|+++.+|.+.+..+++|++|++++|..
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------- 160 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL--------- 160 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---------
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC---------
Confidence 6788889999999999999999999985 589999999999999999999998788999999999999983
Q ss_pred ccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeeccccc
Q 037310 482 IGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQ 535 (656)
Q Consensus 482 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~ 535 (656)
.......+..+++|+.|+++.+... .++........+ +.|++++|..
T Consensus 161 ---~~l~~~~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L-~~l~L~~Np~ 207 (290)
T 1p9a_G 161 ---TELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLL-PFAFLHGNPW 207 (290)
T ss_dssp ---SCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCCC-SEEECCSCCB
T ss_pred ---CccCHHHhcCcCCCCEEECCCCcCC---ccChhhcccccC-CeEEeCCCCc
Confidence 3333345678999999999988654 333332223345 8888887653
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=2.2e-16 Score=164.77 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=125.6
Q ss_pred CCCCCcceEeccccCCcccchhH----HhcCCcccEEEccCCCC---CccCcccc-------CCcccCcEEeCCCCCCcc
Q 037310 362 SSSPHLQTLFLGSNDLNEVNRDF----FQFMASLRVLTLSDGSL---PGHLLTGI-------SNLVSLQHLDPARSKIRR 427 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~---~~~~p~~~-------~~L~~L~~L~l~~~~~~~ 427 (656)
..+++|++|++++|.++...+.. +..+++|++|++++|.. ...+|..+ ..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 45566666666666655543322 44566666666666521 12233333 566666666666666654
Q ss_pred -----cCccccCCCCCCeEecCCccccccChhh----hcCC---------CCCcEEEeeecCCCCcCCCcccccCccccH
Q 037310 428 -----LPMELKYLVHLKRLNLEFTRLTRIPQEV----ISNL---------KMLRVLRMYECGSDKQEGDSILIGGREVLV 489 (656)
Q Consensus 428 -----lp~~~~~l~~L~~L~l~~~~~~~l~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 489 (656)
+|..+.++++|++|++++|.+....... +..+ ++|++|++++|.... .......
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~l~ 180 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------GSMKEWA 180 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------GGHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------HHHHHHH
Confidence 5556666666666766666554322211 2222 666666666666200 0011111
Q ss_pred HHhhcCCCCcEEEEEecchh--hhHhhhc-CcccccccCCceeecccccc----e-EEEeccccccHHHH-HHhCCCCCC
Q 037310 490 VEILSLQHLNVLTVTLESFC--ALRMLLD-SPRLQSLSTPSLCLKHCCQS----E-LLVFNQRRSLLQNI-CISYSKLKH 560 (656)
Q Consensus 490 ~~l~~l~~L~~L~l~~~~~~--~~~~l~~-~~~~~~~ll~~L~l~~~~~~----~-~~~~~~~~~~L~~L-l~~~~~~~~ 560 (656)
..+..+++|+.|+++++... ....+.. .......+ +.|++++|... . ++..+...++|+.| +++|.....
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 35556666666666665543 1112222 33333445 66666666652 1 23334455566666 666532111
Q ss_pred -----cccc--ccCCCccEEEEeCCchhhH----HhcccccCCcCcccccCc-ccccccccccccCCc
Q 037310 561 -----LTWL--IVAPNLKHVRISSCLDLEE----IISVEKLGEVSPEVMHNL-IPLARIEYLILEDLK 616 (656)
Q Consensus 561 -----~~~l--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 616 (656)
+..+ +.+++|++|+|++|..... ++. .+ ..+|+|++|.+++|+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-------------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-------------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-------------HHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-------------HHHhcCCCceEEEccCCc
Confidence 1233 2378899999998875442 322 33 568899999998865
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.6e-14 Score=145.26 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=155.1
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+.+.+..+..++....+++++.|+++++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+ .
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l-~ 120 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQI-T 120 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCC-C
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCC-C
Confidence 3455666677777777888999999999999988888999999999999999998875 388999999999999954 4
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccccc
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 483 (656)
.++ .++.+++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|++|++++|..
T Consensus 121 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l----------- 185 (308)
T 1h6u_A 121 DVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI----------- 185 (308)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-----------
T ss_pred Cch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc-----------
Confidence 455 49999999999999999998877 8999999999999999999887 88999999999999983
Q ss_pred CccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccce
Q 037310 484 GREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 484 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~ 537 (656)
... ..+..+++|+.|+++.+....... ......+ +.|++++|....
T Consensus 186 -~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L-~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 -SDI--SPLASLPNLIEVHLKNNQISDVSP----LANTSNL-FIVTLTNQTITN 231 (308)
T ss_dssp -CCC--GGGGGCTTCCEEECTTSCCCBCGG----GTTCTTC-CEEEEEEEEEEC
T ss_pred -CcC--hhhcCCCCCCEEEccCCccCcccc----ccCCCCC-CEEEccCCeeec
Confidence 211 127889999999999886544432 2233446 888999887654
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=9.9e-15 Score=142.36 Aligned_cols=176 Identities=17% Similarity=0.180 Sum_probs=144.1
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
..+.++.+++.++.+|... .++++.|++++|.++.+++..+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 5677888888888887532 268999999999999999888999999999999999777766777999999999999999
Q ss_pred CCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEE
Q 037310 424 KIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLT 502 (656)
Q Consensus 424 ~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 502 (656)
.+..+|.. +..+++|++|++++|.++.+|...+..+++|++|++++|.. .......+..+++|+.|+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL------------QSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEE
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC------------CccCHHHcCcCcCCCEEE
Confidence 99988764 78999999999999999999988678999999999999983 333445688899999999
Q ss_pred EEecchhhhHhhhcCcccccccCCceeeccccc
Q 037310 503 VTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQ 535 (656)
Q Consensus 503 l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~ 535 (656)
++.+....... ........+ +.|++++|..
T Consensus 162 L~~N~l~~~~~--~~~~~l~~L-~~L~l~~N~~ 191 (251)
T 3m19_A 162 LSTNQLQSVPH--GAFDRLGKL-QTITLFGNQF 191 (251)
T ss_dssp CCSSCCSCCCT--TTTTTCTTC-CEEECCSCCB
T ss_pred CCCCcCCccCH--HHHhCCCCC-CEEEeeCCce
Confidence 99886432221 123333446 8888888754
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=6.7e-15 Score=156.26 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=75.4
Q ss_pred cceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 343 KEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
.+++.|+++++.+..++... ++|++|++++|.++.++ . +..+++|++|++++|.+. .+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcC
Confidence 45555555555544443221 45556666666555544 2 555566666666665322 244322 3556666666
Q ss_pred CCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEE
Q 037310 423 SKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLT 502 (656)
Q Consensus 423 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 502 (656)
|.+..+| .++++++|++|++++|.+..+|.. .++|++|++++|.. . ..+ .++.+++|+.|+
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l------------~-~lp-~~~~l~~L~~L~ 243 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL------------E-ELP-ELQNLPFLTTIY 243 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCC------------S-SCC-CCTTCTTCCEEE
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcC------------C-ccc-ccCCCCCCCEEE
Confidence 6555555 355666666666666655555541 24566666666652 1 122 366777788888
Q ss_pred EEecch
Q 037310 503 VTLESF 508 (656)
Q Consensus 503 l~~~~~ 508 (656)
++.+..
T Consensus 244 l~~N~l 249 (454)
T 1jl5_A 244 ADNNLL 249 (454)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 876654
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=7.6e-16 Score=157.47 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=139.0
Q ss_pred eeEeecchhhHhhhccCCCC--CCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc-CccccCCcccCcEEeCC
Q 037310 345 VTRMSLMQIRIRRLLESSSS--PHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH-LLTGISNLVSLQHLDPA 421 (656)
Q Consensus 345 ~~~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~L~~L~~L~l~ 421 (656)
++.++++++.+.. ..+..+ ++++.|++.+|.+.+..+. +..+++|++|++++|.+... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 5566666654431 112223 5788888888877776655 45678888888888854444 66677888888888888
Q ss_pred CCCCc-ccCccccCCCCCCeEecCCc-cccc--cChhhhcCCCCCcEEEeeec-CCCCcCCCcccccCccc-cHHHhhcC
Q 037310 422 RSKIR-RLPMELKYLVHLKRLNLEFT-RLTR--IPQEVISNLKMLRVLRMYEC-GSDKQEGDSILIGGREV-LVVEILSL 495 (656)
Q Consensus 422 ~~~~~-~lp~~~~~l~~L~~L~l~~~-~~~~--l~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~-~~~~l~~l 495 (656)
+|.+. ..|..+..+++|++|++++| .++. ++.. +..+++|++|++++| .. ... .+..+..+
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l 193 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDF------------TEKHVQVAVAHV 193 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTC------------CHHHHHHHHHHS
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCc------------ChHHHHHHHHhc
Confidence 88776 55667778888888888888 6663 4443 677888888888888 52 222 45567778
Q ss_pred C-CCcEEEEEecch-hhhHhhhcCcccccccCCceeecccccce--EEEeccccccHHHH-HHhCCCCCCc--cccccCC
Q 037310 496 Q-HLNVLTVTLESF-CALRMLLDSPRLQSLSTPSLCLKHCCQSE--LLVFNQRRSLLQNI-CISYSKLKHL--TWLIVAP 568 (656)
Q Consensus 496 ~-~L~~L~l~~~~~-~~~~~l~~~~~~~~~ll~~L~l~~~~~~~--~~~~~~~~~~L~~L-l~~~~~~~~~--~~l~~l~ 568 (656)
+ +|+.|+++++.. ..-..++........+ +.|++++|.... ....+...++|+.| +++|...... ..+..++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 8 888888887642 1112222222233445 777787776322 23344555667777 6666532221 2355677
Q ss_pred CccEEEEeCC
Q 037310 569 NLKHVRISSC 578 (656)
Q Consensus 569 ~L~~L~l~~~ 578 (656)
+|++|++++|
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 7777777766
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=3.2e-16 Score=158.26 Aligned_cols=201 Identities=15% Similarity=0.058 Sum_probs=127.5
Q ss_pred CCCCcceEeccccCCcccchhHH--hcCCcccEEEccCCCCCccCccccCCc-----ccCcEEeCCCCCCcccC-ccccC
Q 037310 363 SSPHLQTLFLGSNDLNEVNRDFF--QFMASLRVLTLSDGSLPGHLLTGISNL-----VSLQHLDPARSKIRRLP-MELKY 434 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~L-----~~L~~L~l~~~~~~~lp-~~~~~ 434 (656)
++++|++|++++|.+++..+..+ ..+++|++|++++|.+... |..++.+ ++|++|++++|.+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56777777777777775433333 6777777777777754444 6666666 77777777777777666 45777
Q ss_pred CCCCCeEecCCccccc---cChhhh--cCCCCCcEEEeeecCCCCcCCCcccccCccccH-HHhhcCCCCcEEEEEecch
Q 037310 435 LVHLKRLNLEFTRLTR---IPQEVI--SNLKMLRVLRMYECGSDKQEGDSILIGGREVLV-VEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 435 l~~L~~L~l~~~~~~~---l~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 508 (656)
+++|++|++++|.+.. ++.. + +.+++|++|++++|.. ......+ ..+..+++|+.|+++++..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l----------~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGM----------ETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCC----------CCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcC----------cchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 7777777777776543 2322 3 6777777777777763 1111222 2335667777777776653
Q ss_pred hhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCccccccCCCccEEEEeCCch
Q 037310 509 CALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLD 580 (656)
Q Consensus 509 ~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 580 (656)
...... ........+ +.|++++|....++.... ++|+.| ++++. +..++.+..+++|++|+++++..
T Consensus 241 ~~~~~~-~~~~~l~~L-~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 241 RDAAGA-PSCDWPSQL-NSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCCC-SCCCCCTTC-CEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCTT
T ss_pred Ccccch-hhhhhcCCC-CEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCCC
Confidence 322111 111222445 778888877665543333 678888 87753 44445578899999999998863
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1e-15 Score=148.23 Aligned_cols=194 Identities=16% Similarity=0.077 Sum_probs=91.0
Q ss_pred CcceEeccccCCcccchhHHhcCCcccEEEccCCC-CCccCccccCCcccCcEEeCCC-CCCcccCc-cccCCCCCCeEe
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGS-LPGHLLTGISNLVSLQHLDPAR-SKIRRLPM-ELKYLVHLKRLN 442 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~L~~L~~L~l~~-~~~~~lp~-~~~~l~~L~~L~ 442 (656)
++++|++++|.++.+++..|..+++|++|++++|. +....+..++.+++|++|++++ |.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555544444444445555555555543 2222222444455555555554 44444443 244455555555
Q ss_pred cCCccccccChhhhcCCCCCc---EEEeeec-CCCCcCCCcccccCccccHHHhhcCCCCc-EEEEEecchhhhHhhhcC
Q 037310 443 LEFTRLTRIPQEVISNLKMLR---VLRMYEC-GSDKQEGDSILIGGREVLVVEILSLQHLN-VLTVTLESFCALRMLLDS 517 (656)
Q Consensus 443 l~~~~~~~l~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~ 517 (656)
+++|.++.+|. +..+++|+ +|++++| .. .......+..+++|+ .|+++.+....+.. ..
T Consensus 112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l------------~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--~~ 175 (239)
T 2xwt_C 112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYM------------TSIPVNAFQGLCNETLTLKLYNNGFTSVQG--YA 175 (239)
T ss_dssp EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTC------------CEECTTTTTTTBSSEEEEECCSCCCCEECT--TT
T ss_pred CCCCCCccccc--cccccccccccEEECCCCcch------------hhcCcccccchhcceeEEEcCCCCCcccCH--hh
Confidence 55554444443 44444444 5555554 31 111222344444555 55554443221111 11
Q ss_pred cccccccCCceeecccc-cceEEE-ecccc-ccHHHH-HHhCCCCCCccccccCCCccEEEEeCCc
Q 037310 518 PRLQSLSTPSLCLKHCC-QSELLV-FNQRR-SLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 518 ~~~~~~ll~~L~l~~~~-~~~~~~-~~~~~-~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
... ..+ +.|++++|. ...++. .+... ++|+.| ++++. +..++.- .+++|+.|+++++.
T Consensus 176 ~~~-~~L-~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKL-DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEE-EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECTTC-
T ss_pred cCC-CCC-CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-HhccCceeeccCcc
Confidence 111 234 666666664 444432 23445 677777 76643 3333322 68899999988765
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=1.2e-14 Score=159.33 Aligned_cols=220 Identities=20% Similarity=0.107 Sum_probs=151.4
Q ss_pred ccEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 323 EKFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
-..+.+.+..+..+|. .+++++.|++++|.+..++. .+++|++|++++|.++.++. .+++|+.|++++|. .
T Consensus 63 L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~-l 133 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQ-L 133 (622)
T ss_dssp CSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSC-C
T ss_pred CcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCC-C
Confidence 3566677777777776 56789999999988887776 77888888888888888765 56778888888884 4
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccCccccC-----------------CCCCCeEecCCccccccChhhhcCCCCCcEE
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLPMELKY-----------------LVHLKRLNLEFTRLTRIPQEVISNLKMLRVL 465 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~-----------------l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L 465 (656)
..+|.. +++|++|++++|.+..+|..+.+ +++|+.|++++|.++.+|. .+++|+.|
T Consensus 134 ~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L 206 (622)
T 3g06_A 134 TSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT----LPSELYKL 206 (622)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred CcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC----ccchhhEE
Confidence 445543 37788888888877776643211 2455555555555555543 23455555
Q ss_pred EeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEecccc
Q 037310 466 RMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRR 545 (656)
Q Consensus 466 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~ 545 (656)
++++|.. . ..+ ..+++|+.|+++++.... ++ .....+ +.|++++|....++. .+
T Consensus 207 ~L~~N~l----------~---~l~---~~~~~L~~L~Ls~N~L~~---lp---~~l~~L-~~L~Ls~N~L~~lp~---~~ 260 (622)
T 3g06_A 207 WAYNNRL----------T---SLP---ALPSGLKELIVSGNRLTS---LP---VLPSEL-KELMVSGNRLTSLPM---LP 260 (622)
T ss_dssp ECCSSCC----------S---SCC---CCCTTCCEEECCSSCCSC---CC---CCCTTC-CEEECCSSCCSCCCC---CC
T ss_pred ECcCCcc----------c---ccC---CCCCCCCEEEccCCccCc---CC---CCCCcC-cEEECCCCCCCcCCc---cc
Confidence 5555542 1 111 124789999999886443 22 233557 999999998776554 56
Q ss_pred ccHHHH-HHhCCCCCCccccccCCCccEEEEeCCchhhHH
Q 037310 546 SLLQNI-CISYSKLKHLTWLIVAPNLKHVRISSCLDLEEI 584 (656)
Q Consensus 546 ~~L~~L-l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 584 (656)
++|+.| +++|.....++.+..+++|+.|+|++|+.....
T Consensus 261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 789999 988755545557889999999999999865544
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=9.6e-15 Score=136.69 Aligned_cols=150 Identities=18% Similarity=0.242 Sum_probs=126.8
Q ss_pred CcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 340 GLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
..+.+++.|+++++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+....|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456789999999999888888888999999999999777664 378899999999999977766788899999999999
Q ss_pred CCCCCCcc-cCccccCCCCCCeEecCCcc-ccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCC
Q 037310 420 PARSKIRR-LPMELKYLVHLKRLNLEFTR-LTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQH 497 (656)
Q Consensus 420 l~~~~~~~-lp~~~~~l~~L~~L~l~~~~-~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 497 (656)
+++|.+.. .|..+..+++|++|++++|. +..+|. +..+++|++|++++|.. .. +..+..+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i------------~~--~~~l~~l~~ 182 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV------------HD--YRGIEDFPK 182 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCC------------CC--CTTGGGCSS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCC------------cC--hHHhccCCC
Confidence 99999885 67779999999999999996 888874 88999999999999983 21 126788899
Q ss_pred CcEEEEEecc
Q 037310 498 LNVLTVTLES 507 (656)
Q Consensus 498 L~~L~l~~~~ 507 (656)
|+.|+++++.
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 9999998775
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.4e-14 Score=144.33 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=112.4
Q ss_pred CcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 340 GLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
..+.+++.|+++++.+..++.+..+++|++|++++|.++++++ +..+++|++|++++|. ...+| .++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 3456677777777777766666777777777777777777665 6777777777777774 33343 477777777777
Q ss_pred CCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCc
Q 037310 420 PARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLN 499 (656)
Q Consensus 420 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 499 (656)
+++|.+..++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.. ....+ +..+++|+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l------------~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI------------SDIVP--LAGLTKLQ 181 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCC------------CCCGG--GTTCTTCC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchh--hccCCCCCEEEccCCcc------------ccchh--hcCCCccC
Confidence 7777777663 46677777777777777777643 67777777777777762 11111 66777777
Q ss_pred EEEEEecchhhhHhhhcCcccccccCCceeecccccce
Q 037310 500 VLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 500 ~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~ 537 (656)
.|+++.+....+..+ .....+ +.|++++|....
T Consensus 182 ~L~L~~N~i~~l~~l----~~l~~L-~~L~l~~n~i~~ 214 (291)
T 1h6t_A 182 NLYLSKNHISDLRAL----AGLKNL-DVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCBCGGG----TTCTTC-SEEEEEEEEEEC
T ss_pred EEECCCCcCCCChhh----ccCCCC-CEEECcCCcccC
Confidence 777776654433221 222334 666777665443
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=3.4e-15 Score=144.56 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=123.2
Q ss_pred CcccEEEccCCCCCccCccccCCcccCcEEeCCCCC-CcccCc-cccCCCCCCeEecCC-ccccccChhhhcCCCCCcEE
Q 037310 389 ASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK-IRRLPM-ELKYLVHLKRLNLEF-TRLTRIPQEVISNLKMLRVL 465 (656)
Q Consensus 389 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~~~~l~~~~l~~l~~L~~L 465 (656)
++|++|++++|.+....+..++.+++|++|++++|. +..+|+ .+.++++|++|++++ |.++.++...+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888885544444467778888888888885 777765 577788888888887 67777776657778888888
Q ss_pred EeeecCCCCcCCCcccccCccccHHHhhcCCCCc---EEEEEec-chhhhHhhhcCcccccccCC-ceeecccccceEEE
Q 037310 466 RMYECGSDKQEGDSILIGGREVLVVEILSLQHLN---VLTVTLE-SFCALRMLLDSPRLQSLSTP-SLCLKHCCQSELLV 540 (656)
Q Consensus 466 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~l~~~~~~~~~ll~-~L~l~~~~~~~~~~ 540 (656)
++++|.. .. .+. +..+++|+ .|+++.+ ....+.. ........+ + .|++++|....++.
T Consensus 111 ~l~~n~l------------~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L-~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 111 GIFNTGL------------KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNE-TLTLKLYNNGFTSVQG 173 (239)
T ss_dssp EEEEECC------------CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSS-EEEEECCSCCCCEECT
T ss_pred eCCCCCC------------cc-ccc-cccccccccccEEECCCCcchhhcCc--ccccchhcc-eeEEEcCCCCCcccCH
Confidence 8888773 11 111 44555555 7888766 3322111 112223345 6 77777777665544
Q ss_pred eccccccHHHH-HHhCCCCCCcc--ccccC-CCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 541 FNQRRSLLQNI-CISYSKLKHLT--WLIVA-PNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 541 ~~~~~~~L~~L-l~~~~~~~~~~--~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
.....++|+.| +.++..+..++ .+..+ ++|++|+++++.. ..+ ....|++|+.|.+.++.
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l---------------~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TAL---------------PSKGLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCC---------------CCTTCTTCSEEECTTC-
T ss_pred hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccC---------------ChhHhccCceeeccCcc
Confidence 33333577777 77764344432 35567 7888888877653 333 11267778888877765
Q ss_pred c
Q 037310 617 N 617 (656)
Q Consensus 617 ~ 617 (656)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=5e-14 Score=135.13 Aligned_cols=129 Identities=26% Similarity=0.344 Sum_probs=67.1
Q ss_pred cceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeC
Q 037310 343 KEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDP 420 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l 420 (656)
.+++.|+++++.+..+. .+..+++|++|++++|.+..+++..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555554442 2345555555555555555555444555555555555555333322333455555555555
Q ss_pred CCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 421 ARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 421 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
++|.+..+|..+..+++|++|++++|.+..++...+..+++|++|++.+|.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 555555555555555555555555555555554444555555555555554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=8.8e-16 Score=156.98 Aligned_cols=221 Identities=20% Similarity=0.171 Sum_probs=107.4
Q ss_pred CcceEeccccCCcccchhHHhcC--CcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcc--cCccccCCCCCCeE
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFM--ASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRR--LPMELKYLVHLKRL 441 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L 441 (656)
.++.++++++.+. +..+..+ ++++.|++++|.+.... ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3556666655443 2334444 56666666666333332 234556666666666665542 55555666666666
Q ss_pred ecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCcc-ccHHHhhcCCCCcEEEEEec-chhhhHhhhcCcc
Q 037310 442 NLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGRE-VLVVEILSLQHLNVLTVTLE-SFCALRMLLDSPR 519 (656)
Q Consensus 442 ~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~ 519 (656)
++++|.+.......++.+++|++|++++|.. ... ..+..+..+++|+.|+++++ .... ..+.....
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~-----------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~ 191 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-----------FSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVA 191 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-----------CCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCC-----------CCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHH
Confidence 6666655432222255566666666666621 122 13333555666666666655 3221 11111111
Q ss_pred ccc-ccCCceeeccccc--c--eEEEeccccccHHHH-HHhCCCCC--CccccccCCCccEEEEeCCchhhHHhcccccC
Q 037310 520 LQS-LSTPSLCLKHCCQ--S--ELLVFNQRRSLLQNI-CISYSKLK--HLTWLIVAPNLKHVRISSCLDLEEIISVEKLG 591 (656)
Q Consensus 520 ~~~-~ll~~L~l~~~~~--~--~~~~~~~~~~~L~~L-l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 591 (656)
... .+ +.|++++|.. . .++.....+++|+.| +++|..+. .++.+..+++|++|++++|..+.....
T Consensus 192 ~l~~~L-~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----- 265 (336)
T 2ast_B 192 HVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL----- 265 (336)
T ss_dssp HSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----
T ss_pred hcccCC-CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----
Confidence 122 34 6666666531 1 122233344556666 65554322 234455566666666666542221100
Q ss_pred CcCcccccCcccccccccccccCC
Q 037310 592 EVSPEVMHNLIPLARIEYLILEDL 615 (656)
Q Consensus 592 ~~~~~~~~~~~~~~~L~~L~l~~~ 615 (656)
..++.+++|+.|++.+|
T Consensus 266 -------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 -------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -------GGGGGCTTCCEEECTTS
T ss_pred -------HHHhcCCCCCEEeccCc
Confidence 13445666666666655
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=3.2e-14 Score=135.50 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=94.6
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~ 425 (656)
+.++..++.++.+|... .+++++|++++|.++.+++..|..+++|++|++++|.+....|..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34555555555554321 25677777777777766666666777777777777755555566677777777777777777
Q ss_pred cccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 426 RRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 426 ~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
..+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.. .......+..+++|+.|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL------------QTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------------SCCCTTTTTTCTTCCEEECC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC------------CEECHHHHhCCCCCCEEEeC
Confidence 776665 46677777777777777766655566777777777777762 22223345556666666666
Q ss_pred ecc
Q 037310 505 LES 507 (656)
Q Consensus 505 ~~~ 507 (656)
.++
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4e-15 Score=152.82 Aligned_cols=232 Identities=14% Similarity=0.080 Sum_probs=113.9
Q ss_pred eecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCc-cccCCcccCcE-EeCCCCCC
Q 037310 348 MSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLL-TGISNLVSLQH-LDPARSKI 425 (656)
Q Consensus 348 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~-L~l~~~~~ 425 (656)
+.-+++.++.+|.-- .+++++|++++|.++.++++.|.++++|++|+|++|.+.+.+| ..|.++++|+. +.++.|++
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 334444444444211 2455566666666665555555556666666666654444333 23455555443 33344555
Q ss_pred cccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 426 RRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 426 ~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
..+|+ .+..+++|++|++++|.+..+|........++..|++.++... .......+..+
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i-----------~~l~~~~f~~~--------- 152 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI-----------HTIERNSFVGL--------- 152 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC-----------CEECTTSSTTS---------
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc-----------ccccccchhhc---------
Confidence 55533 3455555566655555555555432333444445555443310 00011111111
Q ss_pred ecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHH-HHhCCCCCCcc--ccccCCCccEEEEeCCchh
Q 037310 505 LESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISYSKLKHLT--WLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~ 581 (656)
...+ +.|++++|....++.......+|+.| +.+++.++.++ .+..+++|++|++++|. +
T Consensus 153 ----------------~~~l-~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l 214 (350)
T 4ay9_X 153 ----------------SFES-VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-I 214 (350)
T ss_dssp ----------------BSSC-EEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-C
T ss_pred ----------------chhh-hhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-c
Confidence 2223 45555555555544433344456666 55555555554 24567777777777664 3
Q ss_pred hHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCCCCCCCChhHH
Q 037310 582 EEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSSALPFPHLQSL 634 (656)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 634 (656)
+.++ ...|.+|+.|.+.++.+++.+|. ...|++|+.+
T Consensus 215 ~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 215 HSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp CCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred CccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 3331 12455566666666666666653 3355555544
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=4.4e-14 Score=132.16 Aligned_cols=145 Identities=21% Similarity=0.301 Sum_probs=129.5
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+...+..+..++....+++++.|+++++.+..++.+..+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 35666777777888788889999999999988888889999999999999999988656668999999999999997777
Q ss_pred cCccccCCcccCcEEeCCCCC-CcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 404 HLLTGISNLVSLQHLDPARSK-IRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
..|..++.+++|++|++++|. +..+| .+..+++|++|++++|.+.+++. +..+++|++|++++|.
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT--GGGCSSCCEEEECBC-
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH--hccCCCCCEEEeeCcc
Confidence 788899999999999999998 88887 69999999999999999999884 8999999999999998
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1e-13 Score=131.98 Aligned_cols=146 Identities=25% Similarity=0.249 Sum_probs=127.3
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP 402 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 402 (656)
.+.+.+.....+|... ...++.|+++++.+..++ .+..+++|+.|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4566677777777643 378999999999999887 5789999999999999999998888999999999999999655
Q ss_pred ccCccccCCcccCcEEeCCCCCCcccC-ccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 403 GHLLTGISNLVSLQHLDPARSKIRRLP-MELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 403 ~~~p~~~~~L~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
...+..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++.++...+..+++|++|++++|.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 444445789999999999999999885 468999999999999999999998778999999999999998
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.9e-15 Score=152.47 Aligned_cols=108 Identities=14% Similarity=0.050 Sum_probs=52.3
Q ss_pred CCCcceEeccccCCcccchhHH--hcCCcccEEEccCCCCCccCc----cccCCcccCcEEeCCCCCCcccC-ccccCCC
Q 037310 364 SPHLQTLFLGSNDLNEVNRDFF--QFMASLRVLTLSDGSLPGHLL----TGISNLVSLQHLDPARSKIRRLP-MELKYLV 436 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~p----~~~~~L~~L~~L~l~~~~~~~lp-~~~~~l~ 436 (656)
+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3445555555555554443333 455555555555554333222 22334555555555555555443 2355555
Q ss_pred CCCeEecCCccccc---cChh-hhcCCCCCcEEEeeecC
Q 037310 437 HLKRLNLEFTRLTR---IPQE-VISNLKMLRVLRMYECG 471 (656)
Q Consensus 437 ~L~~L~l~~~~~~~---l~~~-~l~~l~~L~~L~l~~~~ 471 (656)
+|++|++++|++.. ++.. .++.+++|++|++++|.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 55555555554332 2111 02345555555555555
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=2.4e-13 Score=135.44 Aligned_cols=164 Identities=20% Similarity=0.333 Sum_probs=142.4
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+.+.+..+..++....+.+++.|++++|.+..++.+..+++|+.|++++|.++.++. +..+++|++|++++|.+.
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~- 125 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS- 125 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCC-
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCC-
Confidence 34556667777778788889999999999999988889999999999999999988754 899999999999999544
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccccc
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 483 (656)
.+ +.++.+++|++|++++|.+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++|..
T Consensus 126 ~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i----------- 190 (291)
T 1h6t_A 126 DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI----------- 190 (291)
T ss_dssp CC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-----------
T ss_pred CC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC-----------
Confidence 44 4789999999999999999988 579999999999999999999987 89999999999999983
Q ss_pred CccccHHHhhcCCCCcEEEEEecch
Q 037310 484 GREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 484 ~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
.. +..+..+++|+.|++++++.
T Consensus 191 -~~--l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 -SD--LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -CB--CGGGTTCTTCSEEEEEEEEE
T ss_pred -CC--ChhhccCCCCCEEECcCCcc
Confidence 21 23488999999999998864
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=5.1e-14 Score=154.07 Aligned_cols=173 Identities=20% Similarity=0.224 Sum_probs=123.7
Q ss_pred CCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 339 IGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 339 ~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
...+.+++.|.+.++.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|+|++|. ...+| .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 34556777888888877777777778888888888888877766 7788888888888884 33444 67888888888
Q ss_pred eCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCC
Q 037310 419 DPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHL 498 (656)
Q Consensus 419 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 498 (656)
+|++|.+..+| .+..+++|+.|++++|.+..++. ++.+++|++|++++|.+ ....+ +..+++|
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l------------~~~~~--l~~l~~L 177 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI------------SDIVP--LAGLTKL 177 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGSCTTCSEEECCSSCC------------CCCGG--GTTCTTC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCccCCchh--hcccCCCCEEECcCCcC------------CCchh--hccCCCC
Confidence 88888887764 47788888888888887777743 77888888888888873 22222 7778888
Q ss_pred cEEEEEecchhhhHhhhcCcccccccCCceeecccccce
Q 037310 499 NVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 499 ~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~ 537 (656)
+.|+++.+....+..+ .....+ +.|++++|....
T Consensus 178 ~~L~Ls~N~i~~l~~l----~~l~~L-~~L~L~~N~l~~ 211 (605)
T 1m9s_A 178 QNLYLSKNHISDLRAL----AGLKNL-DVLELFSQECLN 211 (605)
T ss_dssp CEEECCSSCCCBCGGG----TTCTTC-SEEECCSEEEEC
T ss_pred CEEECcCCCCCCChHH----ccCCCC-CEEEccCCcCcC
Confidence 8888887765443222 222335 777777776544
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=132.91 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=85.9
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccc-hhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVN-RDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK 424 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~ 424 (656)
+.++++++.++.+|.. -...++.|++++|.++.++ ...|..+++|++|++++|.+....+..++.+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 3555555555555431 1334566666666666553 2345666666666666664444444456666666666666666
Q ss_pred CcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 425 IRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 425 ~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
+..+|+. +..+++|++|++++|.+..+++..+..+++|++|++++|.. ....+..+..+++|+.|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI------------TTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC------------CCBCTTTTTTCTTCCEEEC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC------------CEECHHHhcCCCCCCEEEe
Confidence 6665543 56666666666666666666544466666666666666652 3333445555666666666
Q ss_pred Eecc
Q 037310 504 TLES 507 (656)
Q Consensus 504 ~~~~ 507 (656)
+.++
T Consensus 161 ~~N~ 164 (220)
T 2v70_A 161 LANP 164 (220)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 5543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=131.04 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=127.2
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc---CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE---SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
.+.+.+.....+|.. ....++.|+++++.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 455666677777753 34567899999999988742 57899999999999999999988899999999999999977
Q ss_pred CccCccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
....|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.++.+++..+..+++|++|++++|.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 666677799999999999999999988 5669999999999999999999976669999999999999998
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.1e-13 Score=132.71 Aligned_cols=153 Identities=21% Similarity=0.245 Sum_probs=126.3
Q ss_pred ccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCC
Q 037310 342 WKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPA 421 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~ 421 (656)
.+....++.+++.+..+|.. -.++|++|++++|.++.+.+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 18 ~Cs~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EEETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEeCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34556677777777777743 23899999999999999988889999999999999996544444567899999999999
Q ss_pred CCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcE
Q 037310 422 RSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNV 500 (656)
Q Consensus 422 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 500 (656)
+|.+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++++|.. .......+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQL------------KSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCC------------CCCCTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcC------------CccCHHHHhCCCCCCE
Confidence 9999998876 68999999999999999999987 88999999999999983 3333355778888998
Q ss_pred EEEEecch
Q 037310 501 LTVTLESF 508 (656)
Q Consensus 501 L~l~~~~~ 508 (656)
|++.+++.
T Consensus 164 L~l~~N~~ 171 (229)
T 3e6j_A 164 AYLFGNPW 171 (229)
T ss_dssp EECTTSCB
T ss_pred EEeeCCCc
Confidence 88887653
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.48 E-value=5.4e-13 Score=137.02 Aligned_cols=270 Identities=17% Similarity=0.104 Sum_probs=155.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh------hHHHHHHHHHHHhCCC--------------C
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL------QLKRIQDCIARKIGLF--------------S 65 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~~--------------~ 65 (656)
+++.|+|++|+|||||+++++++. . ++|+++.... +...+...+...+... +
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 103 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKF 103 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecc
Confidence 689999999999999999999875 1 6788765433 4455566666554320 0
Q ss_pred CCC--CcccHHHHHHHHHHhhCC-ccEEEEEeCCcCchh---------hhhhccccCCCCCCCcEEEEEceehhhhc---
Q 037310 66 RSW--NSKSLLEKAEDIFKVMKR-KKFVLLLDDIWEPVD---------LAQVGLLVPSATRASNKVVFTTLEFEIGG--- 130 (656)
Q Consensus 66 ~~~--~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~~~~~l~~~~~~~~~iliTTR~~~~~~--- 130 (656)
... ......+....+...... ++.+||+||++.... +..+...+.. . .+.++|+|++......
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~-~~~~~il~g~~~~~l~~~l 181 (350)
T 2qen_A 104 LTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-L-PNLKIILTGSEVGLLHDFL 181 (350)
T ss_dssp GTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-C-TTEEEEEEESSHHHHHHHH
T ss_pred eeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-c-CCeEEEEECCcHHHHHHHH
Confidence 000 123445555555555432 389999999976432 1222222221 2 4677888887654311
Q ss_pred ----c---c-C-CcceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCCCChhHH
Q 037310 131 ----Q---M-E-AHKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASKKTPREW 201 (656)
Q Consensus 131 ----~---~-~-~~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~ 201 (656)
. . + ....+++.+|+.+|+.+++.+.+....... ..+.+..+++.++|+|+++..++..+....+...+
T Consensus 182 ~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~ 258 (350)
T 2qen_A 182 KITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA 258 (350)
T ss_dssp CTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred hhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH
Confidence 0 1 1 123689999999999999988764332111 23457899999999999999988764321122111
Q ss_pred HHHHHHHhcCcccCCchHHHHHHHHhcccccC---CCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHH
Q 037310 202 EHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFL---PDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRAR 278 (656)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~ 278 (656)
. ..+.. .....+.-.+..+ ++ ..+..+..++. +. .+...+........ . + ...
T Consensus 259 ~---~~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~--g~--~~~~~l~~~~~~~~--~---~-~~~ 314 (350)
T 2qen_A 259 M---KRTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL--GY--NRWSLIRDYLAVKG--T---K-IPE 314 (350)
T ss_dssp H---HHHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT--TC--CSHHHHHHHHHHTT--C---C-CCH
T ss_pred H---HHHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh--CC--CCHHHHHHHHHHHh--C---C-CCH
Confidence 1 11111 1111111111122 45 67777777776 22 23333333221110 0 1 123
Q ss_pred HhHHHHHHHHHHcccccccccCcEEe-cHHHHHHHH
Q 037310 279 NQGYSLICTLLHACLLEKEEENCVKM-HDVIRDMAL 313 (656)
Q Consensus 279 ~~~~~~l~~L~~~~Ll~~~~~~~~~~-h~li~~~~~ 313 (656)
..+..++..|.+.+++.... +.|.+ |++++.|.+
T Consensus 315 ~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 315 PRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 45677899999999998753 45654 677887754
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1.1e-13 Score=135.74 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=116.7
Q ss_pred CCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCccc
Q 037310 335 NAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVS 414 (656)
Q Consensus 335 ~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~ 414 (656)
.++....+.+++.|+++++.+..++.+..+++|++|++++|.++++++ +..+++|++|++++|. ...+|. +.. ++
T Consensus 33 ~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~ 107 (263)
T 1xeu_A 33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNG-IPS-AC 107 (263)
T ss_dssp SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTT-CCC-SS
T ss_pred cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCc-ccc-Cc
Confidence 334445567888888888888888777888888888888888888776 7888888888888884 444553 333 88
Q ss_pred CcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhc
Q 037310 415 LQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILS 494 (656)
Q Consensus 415 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (656)
|++|++++|.+..+| .+..+++|++|++++|.++.++. ++.+++|++|++++|.. ... ..+..
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i------------~~~--~~l~~ 170 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI------------TNT--GGLTR 170 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCC------------CBC--TTSTT
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcC------------cch--HHhcc
Confidence 888888888888875 48888888888888888888864 78888888888888873 221 55777
Q ss_pred CCCCcEEEEEecch
Q 037310 495 LQHLNVLTVTLESF 508 (656)
Q Consensus 495 l~~L~~L~l~~~~~ 508 (656)
+++|+.|+++.+..
T Consensus 171 l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 171 LKKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCCCEEeCCCCcc
Confidence 88888888887753
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3e-14 Score=155.85 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=137.6
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
.+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++|.+. .+|+ ++.+++|+.|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCC
Confidence 344445555555555556678889999999998888763 788999999999999544 4554 889999999999999
Q ss_pred CCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|.. ... ..+..+++|+.|++
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l------------~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKI------------TDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCC------------CCC--GGGGSCTTCSEEEC
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCcc------------CCc--hhhcccCCCCEEEC
Confidence 998876 68899999999999998888865 88999999999999983 221 56778888888888
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHHHHhCCCCCCccccccCCCccEEEEeCCchh
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKLKHLTWLIVAPNLKHVRISSCLDL 581 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 581 (656)
+.+....... ......+ +.|+|++|.. ..++.+..+++|+.|+|++|...
T Consensus 161 s~N~l~~~~~----l~~l~~L-~~L~Ls~N~i-----------------------~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDIVP----LAGLTKL-QNLYLSKNHI-----------------------SDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCCGG----GTTCTTC-CEEECCSSCC-----------------------CBCGGGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCchh----hccCCCC-CEEECcCCCC-----------------------CCChHHccCCCCCEEEccCCcCc
Confidence 8775433222 1122234 5555555533 23345666778888888777643
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1.7e-14 Score=148.83 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=28.0
Q ss_pred ccCCCccEEEEeCCch-------hhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 565 IVAPNLKHVRISSCLD-------LEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 565 ~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
..+++|++|++++|.. +..+ +..+..+++|+.|++++++
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l-------------~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKAL-------------GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHH-------------HTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCHHHHHHH-------------HHHhccCCceEEEecCCCc
Confidence 4578899999998861 1122 1356788889999998865
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.9e-13 Score=140.81 Aligned_cols=171 Identities=23% Similarity=0.266 Sum_probs=130.7
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CC-CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SS-SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
.+.+.+.....+|.. ....++.|++++|.+..++. +. ++++|++|++++|.++.+++..|..+++|++|+|++|.+
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 455666667777753 34568889999998887763 34 888999999999999888887788899999999999865
Q ss_pred CccCccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCccccccChhhh---cCCCCCcEEEeeecCCCCcCC
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTRIPQEVI---SNLKMLRVLRMYECGSDKQEG 477 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~l~~~~l---~~l~~L~~L~l~~~~~~~~~~ 477 (656)
....+..+..+++|++|+|++|.+..+ |..+..+++|++|++++|.+..+|...+ ..+++|++|++++|.+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l----- 175 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL----- 175 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-----
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-----
Confidence 555555688899999999999988877 4568889999999999998888888755 5688999999998883
Q ss_pred CcccccCccccHHHhhcCCC--CcEEEEEecch
Q 037310 478 DSILIGGREVLVVEILSLQH--LNVLTVTLESF 508 (656)
Q Consensus 478 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 508 (656)
.......+..++. |+.|++..++.
T Consensus 176 -------~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 -------KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -------CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -------CccCHHHhhhccHhhcceEEecCCCc
Confidence 3334556666665 36677776553
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=3.9e-13 Score=126.96 Aligned_cols=131 Identities=24% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEec
Q 037310 365 PHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNL 443 (656)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l 443 (656)
+++++|++++|.++.+++..+..+++|++|++++|.+....+..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4556666666666555555555566666666666543333233345566666666666666555543 455666666666
Q ss_pred CCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecc
Q 037310 444 EFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLES 507 (656)
Q Consensus 444 ~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 507 (656)
++|.+..++...+..+++|++|++++|.. .......+..+++|+.|+++.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l------------~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL------------KSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC------------SCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCcc------------ceeCHHHhccCCCccEEEecCCC
Confidence 66666555554455566666666666552 22222234555566666666554
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=5e-14 Score=144.57 Aligned_cols=236 Identities=16% Similarity=0.107 Sum_probs=177.1
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcc-cchhHHhcCCcccE-EEccCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNE-VNRDFFQFMASLRV-LTLSDGS 400 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l~~~~ 400 (656)
.+.+.+.+...+|... ...++.|++++|.++.++. +.++++|++|++++|.+.. +++..|..+++|+. +.+..|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4566777778888633 4689999999999999974 6899999999999998754 66777888988776 5566665
Q ss_pred CCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCc-cccccChhhhcCCC-CCcEEEeeecCCCCcCC
Q 037310 401 LPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFT-RLTRIPQEVISNLK-MLRVLRMYECGSDKQEG 477 (656)
Q Consensus 401 ~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~-~~~~l~~~~l~~l~-~L~~L~l~~~~~~~~~~ 477 (656)
+....|..+..+++|++|++++|.+..+|+. +....++..|++..+ .+..++...+..+. .++.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i----- 166 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI----- 166 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-----
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-----
Confidence 5555577899999999999999999988763 556677888998775 88888876666665 689999999983
Q ss_pred CcccccCccccHHHhhcCCCCcEEEEEecchhhhHhhhc-CcccccccCCceeecccccceEEEeccccccHHHH-HHhC
Q 037310 478 DSILIGGREVLVVEILSLQHLNVLTVTLESFCALRMLLD-SPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNI-CISY 555 (656)
Q Consensus 478 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~L-l~~~ 555 (656)
...+.......+|+.+.+..+. .+..++. .+.....+ +.|++++|....++. ..+.+|++| +.++
T Consensus 167 --------~~i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l~~L-~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 167 --------QEIHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGASGP-VILDISRTRIHSLPS--YGLENLKKLRARST 233 (350)
T ss_dssp --------CEECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTEECC-SEEECTTSCCCCCCS--SSCTTCCEEECTTC
T ss_pred --------cCCChhhccccchhHHhhccCC--cccCCCHHHhccCccc-chhhcCCCCcCccCh--hhhccchHhhhccC
Confidence 1233333345677777776432 3333432 23445567 999999998776654 335577888 7777
Q ss_pred CCCCCccccccCCCccEEEEeCCc
Q 037310 556 SKLKHLTWLIVAPNLKHVRISSCL 579 (656)
Q Consensus 556 ~~~~~~~~l~~l~~L~~L~l~~~~ 579 (656)
..++.+|.+..|++|+.+++.+..
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CCcCcCCCchhCcChhhCcCCCCc
Confidence 788888888999999999997643
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.1e-13 Score=126.79 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=110.4
Q ss_pred EEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCcc
Q 037310 327 VLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGH 404 (656)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 404 (656)
.+.+.....+|.. ...+++.|+++++.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.+...
T Consensus 13 ~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 13 ECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp ECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 3444455555542 34578888888888877664 57788888888888888888777778888888888888855544
Q ss_pred CccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 405 LLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.+..++.+++|++|++++|.+..+|+. +.++++|++|++++|.++.++...+..+++|++|++++|.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 444578888888888888888887765 6788888888888888888887667788888888888887
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=2.3e-15 Score=161.16 Aligned_cols=250 Identities=16% Similarity=0.177 Sum_probs=134.5
Q ss_pred CcccceeEeecchhhHhhh-----cc--CCCCCCcceEeccccCCcccc----hhHHhcCCcccEEEccCCCCCccCccc
Q 037310 340 GLWKEVTRMSLMQIRIRRL-----LE--SSSSPHLQTLFLGSNDLNEVN----RDFFQFMASLRVLTLSDGSLPGHLLTG 408 (656)
Q Consensus 340 ~~~~~~~~L~l~~~~~~~l-----~~--~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~p~~ 408 (656)
...++++.|+++++.+... .. ....++|++|++++|.++... +..+..+++|+.|++++|.+....+..
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 3445666666666654321 11 233456777777776665533 333455667777777776433322222
Q ss_pred cC-----CcccCcEEeCCCCCCcc-----cCccccCCCCCCeEecCCccccccC-----hhhhcCCCCCcEEEeeecCCC
Q 037310 409 IS-----NLVSLQHLDPARSKIRR-----LPMELKYLVHLKRLNLEFTRLTRIP-----QEVISNLKMLRVLRMYECGSD 473 (656)
Q Consensus 409 ~~-----~L~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~l~-----~~~l~~l~~L~~L~l~~~~~~ 473 (656)
+. .+++|++|++++|.+.. ++..+..+++|++|++++|.+.... +.....+++|++|++++|..
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l- 268 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI- 268 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-
Confidence 22 24467777777776664 4555666777777777777655432 22123466777777777762
Q ss_pred CcCCCcccccCccc----cHHHhhcCCCCcEEEEEecchhhh--HhhhcCc-ccccccCCceeecccccceE-----EEe
Q 037310 474 KQEGDSILIGGREV----LVVEILSLQHLNVLTVTLESFCAL--RMLLDSP-RLQSLSTPSLCLKHCCQSEL-----LVF 541 (656)
Q Consensus 474 ~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~~~-~~~~~ll~~L~l~~~~~~~~-----~~~ 541 (656)
... .+..+..+++|+.|+++++..... ..+.... .....+ +.|++++|..... ...
T Consensus 269 -----------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 269 -----------TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp -----------CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHH
T ss_pred -----------CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHH
Confidence 222 345566677777777776654211 1111111 111235 7777777764431 112
Q ss_pred ccccccHHHH-HHhCCCCCCc--cccc-----cCCCccEEEEeCCchhh----HHhcccccCCcCcccccCccccccccc
Q 037310 542 NQRRSLLQNI-CISYSKLKHL--TWLI-----VAPNLKHVRISSCLDLE----EIISVEKLGEVSPEVMHNLIPLARIEY 609 (656)
Q Consensus 542 ~~~~~~L~~L-l~~~~~~~~~--~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~~ 609 (656)
+...++|+.| ++++ .+... ..+. ..++|++|++++|.... .+ |..+..+++|++
T Consensus 337 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l-------------~~~l~~~~~L~~ 402 (461)
T 1z7x_W 337 LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL-------------AATLLANHSLRE 402 (461)
T ss_dssp HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-------------HHHHHHCCCCCE
T ss_pred HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH-------------HHHHHhCCCccE
Confidence 2233456666 6554 22221 1222 15677777777776432 22 235566788888
Q ss_pred ccccCCc
Q 037310 610 LILEDLK 616 (656)
Q Consensus 610 L~l~~~~ 616 (656)
|++++++
T Consensus 403 L~l~~N~ 409 (461)
T 1z7x_W 403 LDLSNNC 409 (461)
T ss_dssp EECCSSS
T ss_pred EECCCCC
Confidence 8888764
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=9.3e-14 Score=136.20 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=139.0
Q ss_pred cccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeC
Q 037310 341 LWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDP 420 (656)
Q Consensus 341 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l 420 (656)
.+.++..+.+.++.++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|. ...+|. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 45567777888888888887788999999999999999887 38899999999999995 455555 999999999999
Q ss_pred CCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcE
Q 037310 421 ARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNV 500 (656)
Q Consensus 421 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 500 (656)
++|.+..+|.... ++|++|++++|.++.++. ++.+++|++|++++|.. ... ..+..+++|+.
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i------------~~~--~~l~~l~~L~~ 154 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL------------KSI--VMLGFLSKLEV 154 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCC------------CBC--GGGGGCTTCCE
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCChh--hcCcccccEEECCCCcC------------CCC--hHHccCCCCCE
Confidence 9999999886443 999999999999999875 89999999999999983 221 36888999999
Q ss_pred EEEEecchhhhHhhhcCcccccccCCceeecccccce
Q 037310 501 LTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 501 L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~ 537 (656)
|+++++..... ........+ +.|++++|....
T Consensus 155 L~L~~N~i~~~----~~l~~l~~L-~~L~l~~N~~~~ 186 (263)
T 1xeu_A 155 LDLHGNEITNT----GGLTRLKKV-NWIDLTGQKCVN 186 (263)
T ss_dssp EECTTSCCCBC----TTSTTCCCC-CEEEEEEEEEEC
T ss_pred EECCCCcCcch----HHhccCCCC-CEEeCCCCcccC
Confidence 99998875544 222333446 888999887654
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=3.3e-14 Score=143.36 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=133.5
Q ss_pred cceeEeecchhhHhhhc--cC--CCCCCcceEeccccCCcccch----hHHhcCCcccEEEccCCCCCccCccccCCccc
Q 037310 343 KEVTRMSLMQIRIRRLL--ES--SSSPHLQTLFLGSNDLNEVNR----DFFQFMASLRVLTLSDGSLPGHLLTGISNLVS 414 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~--~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~ 414 (656)
.+++.|+++++.+.... .+ ..+++|++|++++|.++...+ ..+..+++|++|++++|.+....|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 35788888888776432 33 778899999999998876422 33457889999999999776666778889999
Q ss_pred CcEEeCCCCCCcc---cCc--cccCCCCCCeEecCCccccccChh---hhcCCCCCcEEEeeecCCCCcCCCcccccCcc
Q 037310 415 LQHLDPARSKIRR---LPM--ELKYLVHLKRLNLEFTRLTRIPQE---VISNLKMLRVLRMYECGSDKQEGDSILIGGRE 486 (656)
Q Consensus 415 L~~L~l~~~~~~~---lp~--~~~~l~~L~~L~l~~~~~~~l~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 486 (656)
|++|++++|.+.. ++. .+..+++|++|++++|.++.++.. .++.+++|++|++++|.. ..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l------------~~ 238 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL------------RA 238 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC------------CC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC------------Cc
Confidence 9999999998653 433 346888999999999988766642 356788999999999883 22
Q ss_pred ccHHHhhcC---CCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccHHHHHHhCCCCCCccc
Q 037310 487 VLVVEILSL---QHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKLKHLTW 563 (656)
Q Consensus 487 ~~~~~l~~l---~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~~~ 563 (656)
..+..+..+ ++|+.|+++++... .++... ...+ +.|++++|... .++.
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~--~~~L-~~L~Ls~N~l~-----------------------~~~~ 289 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLE---QVPKGL--PAKL-RVLDLSSNRLN-----------------------RAPQ 289 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCC---SCCSCC--CSCC-SCEECCSCCCC-----------------------SCCC
T ss_pred cchhhHHhccCcCcCCEEECCCCCCC---chhhhh--cCCC-CEEECCCCcCC-----------------------CCch
Confidence 223333333 57777777766543 222221 1334 56666555322 2233
Q ss_pred cccCCCccEEEEeCCch
Q 037310 564 LIVAPNLKHVRISSCLD 580 (656)
Q Consensus 564 l~~l~~L~~L~l~~~~~ 580 (656)
+..+++|++|++++++.
T Consensus 290 ~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCSCEECSSTTT
T ss_pred hhhCCCccEEECcCCCC
Confidence 45578888888887763
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=4.7e-15 Score=158.68 Aligned_cols=232 Identities=17% Similarity=0.141 Sum_probs=112.7
Q ss_pred CcceEeccccCCccc----chhHHhcCCcccEEEccCCCCCccCcccc-----CCcccCcEEeCCCCCCcc-----cCcc
Q 037310 366 HLQTLFLGSNDLNEV----NRDFFQFMASLRVLTLSDGSLPGHLLTGI-----SNLVSLQHLDPARSKIRR-----LPME 431 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-----~~L~~L~~L~l~~~~~~~-----lp~~ 431 (656)
+|++|++++|.++.. .+..+..+++|++|++++|.+....+..+ ...++|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 466666666655532 23445556666666666654322212111 123456666666665542 3344
Q ss_pred ccCCCCCCeEecCCccccccChhhhc-----CCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEec
Q 037310 432 LKYLVHLKRLNLEFTRLTRIPQEVIS-----NLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLE 506 (656)
Q Consensus 432 ~~~l~~L~~L~l~~~~~~~l~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 506 (656)
+..+++|++|++++|.+.......+. .+++|++|++++|... .......+..+..+++|+.|+++.+
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~--------~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--------SDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB--------TTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc--------HHHHHHHHHHHHhCCCccEEeccCC
Confidence 55556666666666655433221121 2446666666666520 0000123455666777777777766
Q ss_pred chhhh--HhhhcC-cccccccCCceeecccccce-----EEEeccccccHHHH-HHhCCCCCCc--cccc-----cCCCc
Q 037310 507 SFCAL--RMLLDS-PRLQSLSTPSLCLKHCCQSE-----LLVFNQRRSLLQNI-CISYSKLKHL--TWLI-----VAPNL 570 (656)
Q Consensus 507 ~~~~~--~~l~~~-~~~~~~ll~~L~l~~~~~~~-----~~~~~~~~~~L~~L-l~~~~~~~~~--~~l~-----~l~~L 570 (656)
..... ..+... ......+ +.|++++|.... +...+...++|+.| ++++. +... ..+. ..++|
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRL-RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCC
T ss_pred cCChHHHHHHHHHHhcCCCCc-eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccc
Confidence 53221 111111 1112335 777777775443 12222334556666 65542 2111 1111 22577
Q ss_pred cEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 571 KHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 571 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
++|++++|......... .+..+..+++|++|+++++.
T Consensus 316 ~~L~L~~n~l~~~~~~~---------l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSH---------FSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp CEEECTTSCCBGGGHHH---------HHHHHHHCSSCCEEECCSSB
T ss_pred eeeEcCCCCCchHHHHH---------HHHHHhhCCCccEEEccCCc
Confidence 77777777633221000 01245567888999888873
No 113
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=9.3e-13 Score=138.52 Aligned_cols=276 Identities=12% Similarity=0.063 Sum_probs=156.1
Q ss_pred CceEEEE--EcCCCCcHHHHHHHHhhcccCCC---CCCc-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 037310 4 EVGILGL--YGMGGVGKTTLLTLINNKFFDTP---NDFD-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKA 77 (656)
Q Consensus 4 ~~~vv~i--~G~~GiGKTtLA~~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 77 (656)
..+.+.| +|++|+||||||+.+++.. ... .+++ .++|+++....+...+...++.+++..... ......+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 126 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV-RGAPALDIL 126 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC-TTCCHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHH
Confidence 4567888 9999999999999999876 110 0122 467888766677888888999888653221 122344555
Q ss_pred HHHHHhhC--CccEEEEEeCCcCchh--------hhhhccccCCCC--C--CCcEEEEEceehhhhcccC---------C
Q 037310 78 EDIFKVMK--RKKFVLLLDDIWEPVD--------LAQVGLLVPSAT--R--ASNKVVFTTLEFEIGGQME---------A 134 (656)
Q Consensus 78 ~~l~~~l~--~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~--~--~~~~iliTTR~~~~~~~~~---------~ 134 (656)
..+...+. +++++|||||+|.... +..+...+.... . ....+|+||+...+..... .
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 55555553 6799999999975321 222222221111 1 2344777887655321110 1
Q ss_pred cceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcC------CCchHHHHHHHHHc-----CCC---ChhH
Q 037310 135 HKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECG------GLPLALITVGRAMA-----SKK---TPRE 200 (656)
Q Consensus 135 ~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal~~~a~~l~-----~~~---~~~~ 200 (656)
...+.+++++.++++++|.+.+.... ....-..+....+++.++ |.|..+..+..... ... +.+.
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 12389999999999999977653211 001112456788999999 99975554443211 111 1222
Q ss_pred HHHHHHHHhcCcccCCchHHHHHHHHhcccccCCCCCchhHHHhhccCC--CCceechhHHHHHHHHh--CccccCCCcc
Q 037310 201 WEHAIEVLSSSAFKFSSLAKKLYSSLKLSYDFLPDDASRFCLLYCSLFP--EDYRISIEDLIDCWICE--GLLDEYDGIR 276 (656)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~~~~~~f~--~~~~~~~~~l~~~w~~~--~~~~~~~~~~ 276 (656)
+......... ...+.-.+..|++ ..+.++..++.+. +...++...+...+... .... ... .
T Consensus 286 v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 350 (412)
T 1w5s_A 286 VRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN-VKP-R 350 (412)
T ss_dssp HHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-CCC-C
T ss_pred HHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-CCC-C
Confidence 2222211100 2334556788888 7788877777643 23334444443333211 0011 010 1
Q ss_pred HHHhHHHHHHHHHHccccccc
Q 037310 277 ARNQGYSLICTLLHACLLEKE 297 (656)
Q Consensus 277 ~~~~~~~~l~~L~~~~Ll~~~ 297 (656)
....+..++..|.+.+++...
T Consensus 351 ~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 351 GYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEee
Confidence 234466789999999999873
No 114
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=7.1e-12 Score=128.94 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=151.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-----hhHHHHHHHHHHHhC--------------C---
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-----LQLKRIQDCIARKIG--------------L--- 63 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~--------------~--- 63 (656)
+++.|+|++|+|||+|+++++++. . . ..+|+++... .+.......+.+.+. .
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 104 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQG 104 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccce
Confidence 589999999999999999999986 2 1 2578887542 222333333333221 0
Q ss_pred -CCCC----C-----CcccHHHHHHHHHHhhCCccEEEEEeCCcCchh-----h-hhhccccCCCCCCCcEEEEEceehh
Q 037310 64 -FSRS----W-----NSKSLLEKAEDIFKVMKRKKFVLLLDDIWEPVD-----L-AQVGLLVPSATRASNKVVFTTLEFE 127 (656)
Q Consensus 64 -~~~~----~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~-~~~~~~l~~~~~~~~~iliTTR~~~ 127 (656)
.... . ......+....+.+... ++++|||||++.... + ..+..... .. .+.++|+|++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~i~~g~~~~ 181 (357)
T 2fna_A 105 IVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NL-KRIKFIMSGSEMG 181 (357)
T ss_dssp EEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HC-TTEEEEEEESSHH
T ss_pred EEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH-cC-CCeEEEEEcCchH
Confidence 0000 0 12234445555544322 499999999965321 1 11222111 12 4578889988764
Q ss_pred hhcc----------c-CC-cceEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHHcCC
Q 037310 128 IGGQ----------M-EA-HKSFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAMASK 195 (656)
Q Consensus 128 ~~~~----------~-~~-~~~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 195 (656)
.... . +. ...+.+.+|+.+|+.+++.+.+....... .. ...+++.++|+|+++..++..+...
T Consensus 182 ~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i~~~t~G~P~~l~~~~~~~~~~ 256 (357)
T 2fna_A 182 LLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVVYEKIGGIPGWLTYFGFIYLDN 256 (357)
T ss_dssp HHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHHHHHhCCCHHHHHHHHHHHccc
Confidence 3110 1 11 25789999999999999988654221111 11 2789999999999999988776432
Q ss_pred CChhHHHHHHHHHhcCcccCCchHHHHHHHHh-ccc--ccCCCCCchhHHHhhccCCCCceechhHHHHHHH-HhCcccc
Q 037310 196 KTPREWEHAIEVLSSSAFKFSSLAKKLYSSLK-LSY--DFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWI-CEGLLDE 271 (656)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~s~--~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~-~~~~~~~ 271 (656)
.+...|.. .+... ....+...+. ..+ .++++ ..+..+..++. +. +...+..... ..|.
T Consensus 257 ~~~~~~~~---~~~~~------~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~--g~---~~~~l~~~~~~~~g~--- 318 (357)
T 2fna_A 257 KNLDFAIN---QTLEY------AKKLILKEFENFLHGREIARK-RYLNIMRTLSK--CG---KWSDVKRALELEEGI--- 318 (357)
T ss_dssp CCHHHHHH---HHHHH------HHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT--CB---CHHHHHHHHHHHHCS---
T ss_pred cchHHHHH---HHHHH------HHHHHHHHHHHHhhccccccH-HHHHHHHHHHc--CC---CHHHHHHHHHHhcCC---
Confidence 22222321 11100 0001111111 111 15666 67888888887 22 3333322110 1110
Q ss_pred CCCccHHHhHHHHHHHHHHcccccccccCcEE-ecHHHHHHH
Q 037310 272 YDGIRARNQGYSLICTLLHACLLEKEEENCVK-MHDVIRDMA 312 (656)
Q Consensus 272 ~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~-~h~li~~~~ 312 (656)
..........+..|.+.+++.... +.|. .|++++++.
T Consensus 319 ---~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 319 ---EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 012245667899999999998754 4566 577887763
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=4.5e-14 Score=147.18 Aligned_cols=230 Identities=17% Similarity=0.121 Sum_probs=163.7
Q ss_pred ccceeEeecchhhHhhh-----c-cCCCCCCcceEeccccCCcccc---hhH-------HhcCCcccEEEccCCCCCc--
Q 037310 342 WKEVTRMSLMQIRIRRL-----L-ESSSSPHLQTLFLGSNDLNEVN---RDF-------FQFMASLRVLTLSDGSLPG-- 403 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~~~~~---~~~-------~~~l~~L~~L~l~~~~~~~-- 403 (656)
.++++.|+++++.+... . .+..+++|++|++++|.+..+. |.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 45789999999876542 2 3678999999999998555332 222 3688999999999996665
Q ss_pred --cCccccCCcccCcEEeCCCCCCcc-----cCccccCC---------CCCCeEecCCcccc--ccCh--hhhcCCCCCc
Q 037310 404 --HLLTGISNLVSLQHLDPARSKIRR-----LPMELKYL---------VHLKRLNLEFTRLT--RIPQ--EVISNLKMLR 463 (656)
Q Consensus 404 --~~p~~~~~L~~L~~L~l~~~~~~~-----lp~~~~~l---------~~L~~L~l~~~~~~--~l~~--~~l~~l~~L~ 463 (656)
.+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++. ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 377788999999999999998863 34445555 89999999999876 4442 2367899999
Q ss_pred EEEeeecCCCCcCCCcccccCcc--ccHH-HhhcCCCCcEEEEEecchhh--hHhhhcCcccccccCCceeecccccceE
Q 037310 464 VLRMYECGSDKQEGDSILIGGRE--VLVV-EILSLQHLNVLTVTLESFCA--LRMLLDSPRLQSLSTPSLCLKHCCQSEL 538 (656)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~--~~~l~~~~~~~~~ll~~L~l~~~~~~~~ 538 (656)
+|++++|.. ...+ .... .+..+++|+.|+++++.... ...++........+ +.|++++|.....
T Consensus 191 ~L~L~~n~l----------~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 191 TVKMVQNGI----------RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-RELGLNDCLLSAR 259 (386)
T ss_dssp EEECCSSCC----------CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-CEEECTTCCCCHH
T ss_pred EEECcCCCC----------CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-CEEECCCCCCchh
Confidence 999999983 1111 1233 67889999999999887522 13344333444557 9999999986542
Q ss_pred -----EEec--cccccHHHH-HHhCCCCC-----Ccccc-ccCCCccEEEEeCCchhh
Q 037310 539 -----LVFN--QRRSLLQNI-CISYSKLK-----HLTWL-IVAPNLKHVRISSCLDLE 582 (656)
Q Consensus 539 -----~~~~--~~~~~L~~L-l~~~~~~~-----~~~~l-~~l~~L~~L~l~~~~~~~ 582 (656)
+..+ ...++|+.| +++|.... .+..+ .++++|++|++++|....
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 1222 236788889 88865443 22345 568999999999987543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.3e-13 Score=122.70 Aligned_cols=105 Identities=24% Similarity=0.387 Sum_probs=53.6
Q ss_pred CCCcceEeccccCCc--ccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcc-cCccccCCCCCCe
Q 037310 364 SPHLQTLFLGSNDLN--EVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRR-LPMELKYLVHLKR 440 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~-lp~~~~~l~~L~~ 440 (656)
.++|++|++++|.++ .++. .+..+++|++|++++|.+.. + ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 345555555555554 3322 24555555555555553222 2 345555555555555555554 4444444555555
Q ss_pred EecCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 441 LNLEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 441 L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
|++++|.++.+|. ..+..+++|++|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 5555555555441 225555555555555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.6e-13 Score=119.01 Aligned_cols=105 Identities=18% Similarity=0.340 Sum_probs=57.0
Q ss_pred CCCcceEeccccCCc--ccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcc-cCccccCCCCCCe
Q 037310 364 SPHLQTLFLGSNDLN--EVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRR-LPMELKYLVHLKR 440 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~-lp~~~~~l~~L~~ 440 (656)
.++++.|++++|.++ .++ ..+..+++|++|++++|.+... ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 345556666666555 232 2345556666666666533322 445556666666666665554 4444555566666
Q ss_pred EecCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 441 LNLEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 441 L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
|++++|.++.++. ..++.+++|++|++++|.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 6666665555431 225556666666666655
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=6.8e-13 Score=136.69 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=135.5
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHh-cCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQ-FMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
..+.++.+++.++.+|.. -...++.|++++|.++.+++..+. .+++|++|++++|.+....+..+..+++|++|+|++
T Consensus 19 ~~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp ETTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 346788888888888742 245689999999999999888787 899999999999966666667899999999999999
Q ss_pred CCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEE
Q 037310 423 SKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVL 501 (656)
Q Consensus 423 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 501 (656)
|.+..+|. .+..+++|++|++++|.+..+++..+..+++|++|++++|... ......+..+..+++|+.|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~---------~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS---------RFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---------SCCGGGTC----CTTCCEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC---------eeCHHHhcCcccCCcCCEE
Confidence 99999877 4899999999999999999997777999999999999999841 1111122223678999999
Q ss_pred EEEecchhhhH--hhhcCcccccccCCceeeccccc
Q 037310 502 TVTLESFCALR--MLLDSPRLQSLSTPSLCLKHCCQ 535 (656)
Q Consensus 502 ~l~~~~~~~~~--~l~~~~~~~~~ll~~L~l~~~~~ 535 (656)
+++.+....+. .+.....+ .+ +.|++++|..
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~--~l-~~l~l~~N~~ 201 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAW--VK-NGLYLHNNPL 201 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHH--HH-TTEECCSSCE
T ss_pred ECCCCCCCccCHHHhhhccHh--hc-ceEEecCCCc
Confidence 99988653322 11111111 13 6677777643
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.4e-12 Score=119.47 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=113.2
Q ss_pred cchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccC
Q 037310 350 LMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLP 429 (656)
Q Consensus 350 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp 429 (656)
+..+.+...+.+.++++|++|++++|.++.++ ......++|++|++++|.+.. + ..++.+++|++|++++|.+..+|
T Consensus 4 lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp CCHHHHHTSCEEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred ccHHHHHHHHhcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccC
Confidence 33445555666778899999999999988774 323334499999999995544 4 57899999999999999999998
Q ss_pred ccc-cCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecc
Q 037310 430 MEL-KYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLES 507 (656)
Q Consensus 430 ~~~-~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 507 (656)
+.+ ..+++|++|++++|.+..+|. ..+..+++|++|++++|.. ..........+..+++|+.|+++.+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i---------~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV---------TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG---------GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC---------CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 765 899999999999999988886 2388899999999999983 01111112247888999999998876
Q ss_pred hh
Q 037310 508 FC 509 (656)
Q Consensus 508 ~~ 509 (656)
..
T Consensus 152 ~~ 153 (176)
T 1a9n_A 152 LK 153 (176)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=8.3e-13 Score=142.83 Aligned_cols=180 Identities=19% Similarity=0.187 Sum_probs=94.8
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
+++.|+++++.+..+|... +++|++|++++|.++.++ ..+++|++|++++|.+.. +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 4555555555555544321 245556666665555544 234555566665553332 444 433 5556666655
Q ss_pred CCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEE
Q 037310 424 KIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTV 503 (656)
Q Consensus 424 ~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 503 (656)
.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.. .. .+. +. ++|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L------------~~-lp~-l~--~~L----- 182 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQL------------TF-LPE-LP--ESL----- 182 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC------------SC-CCC-CC--TTC-----
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCC------------CC-cch-hh--CCC-----
Confidence 5555555 45555666665555555553 345555555555552 10 111 21 344
Q ss_pred EecchhhhHhhhcCcccccccCCceeecccccceEEEeccccccH-------HHH-HHhCCCCCCccccccCCCccEEEE
Q 037310 504 TLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLVFNQRRSLL-------QNI-CISYSKLKHLTWLIVAPNLKHVRI 575 (656)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~~~~~~~~L-------~~L-l~~~~~~~~~~~l~~l~~L~~L~l 575 (656)
+.|++++|....++. +.. +| +.| +++|.....++.+..+++|++|+|
T Consensus 183 ----------------------~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 183 ----------------------EALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ----------------------CEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred ----------------------CEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 444454444443322 111 44 666 666544344445777999999999
Q ss_pred eCCchhhHHh
Q 037310 576 SSCLDLEEII 585 (656)
Q Consensus 576 ~~~~~~~~~~ 585 (656)
++|......+
T Consensus 238 ~~N~l~~~~p 247 (571)
T 3cvr_A 238 EDNPLSSRIR 247 (571)
T ss_dssp CSSSCCHHHH
T ss_pred eCCcCCCcCH
Confidence 9988666553
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=4.3e-14 Score=145.83 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=152.7
Q ss_pred ecchhhHhh-hccC-CCCCCcceEeccccCCcccch----hHHhcCC-cccEEEccCCCCCccCccccCCc-----ccCc
Q 037310 349 SLMQIRIRR-LLES-SSSPHLQTLFLGSNDLNEVNR----DFFQFMA-SLRVLTLSDGSLPGHLLTGISNL-----VSLQ 416 (656)
Q Consensus 349 ~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~L-----~~L~ 416 (656)
.++.+.+.. ++.+ ...++|++|++++|.++..++ ..+..++ +|++|++++|.+....+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444555543 3444 445569999999999998887 6688888 89999999996666666667765 8999
Q ss_pred EEeCCCCCCcccCcc-----ccCC-CCCCeEecCCccccccChhhhc----C-CCCCcEEEeeecCCCCcCCCcccccCc
Q 037310 417 HLDPARSKIRRLPME-----LKYL-VHLKRLNLEFTRLTRIPQEVIS----N-LKMLRVLRMYECGSDKQEGDSILIGGR 485 (656)
Q Consensus 417 ~L~l~~~~~~~lp~~-----~~~l-~~L~~L~l~~~~~~~l~~~~l~----~-l~~L~~L~l~~~~~~~~~~~~~~~~~~ 485 (656)
+|++++|.+...+.. +..+ ++|++|++++|.+...+...+. . .++|++|++++|... ....
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------~~~~ 155 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG--------IKSS 155 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG--------GSCH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC--------HHHH
Confidence 999999998865543 5556 8999999999998887765443 3 369999999999830 0011
Q ss_pred cccHHHhhcCC-CCcEEEEEecchhhhH--hhhcCcccc-cccCCceeecccccceEEEeccccccHHHHHHhCCCCCCc
Q 037310 486 EVLVVEILSLQ-HLNVLTVTLESFCALR--MLLDSPRLQ-SLSTPSLCLKHCCQSELLVFNQRRSLLQNICISYSKLKHL 561 (656)
Q Consensus 486 ~~~~~~l~~l~-~L~~L~l~~~~~~~~~--~l~~~~~~~-~~ll~~L~l~~~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~ 561 (656)
......+..++ +|+.|+++++...... .+....... ..+ +.|++++|..... ....+ .
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~i~~~--------~~~~l---------~ 217 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV-TSLDLSANLLGLK--------SYAEL---------A 217 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEECTTSCGGGS--------CHHHH---------H
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCC-CEEECCCCCCChh--------HHHHH---------H
Confidence 23344556665 8999999987653211 111111111 245 8888888764321 11112 1
Q ss_pred ccccc-CCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCc
Q 037310 562 TWLIV-APNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLK 616 (656)
Q Consensus 562 ~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 616 (656)
..+.. .++|++|+|++|..-..... .+ ...+..+++|+.|.+++|.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~--------~l-~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLE--------NL-KLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHH--------HH-HHTTTTTTTCSEEEEEHHH
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHH--------HH-HHHHhcCCCccEEEeccCC
Confidence 11223 36999999999874321110 00 1245678999999999875
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=6.4e-13 Score=121.75 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=113.8
Q ss_pred CCCCcccceeEeecchhhHhhhccCCCCC-CcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccc-cCCccc
Q 037310 337 PGIGLWKEVTRMSLMQIRIRRLLESSSSP-HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTG-ISNLVS 414 (656)
Q Consensus 337 ~~~~~~~~~~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~ 414 (656)
+......+++.|+++++.++.++.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.+. .+|+. ++.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 33445678999999999998887776655 999999999999987 34889999999999999554 45544 489999
Q ss_pred CcEEeCCCCCCcccCc--cccCCCCCCeEecCCccccccChh---hhcCCCCCcEEEeeecC
Q 037310 415 LQHLDPARSKIRRLPM--ELKYLVHLKRLNLEFTRLTRIPQE---VISNLKMLRVLRMYECG 471 (656)
Q Consensus 415 L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~l~~~---~l~~l~~L~~L~l~~~~ 471 (656)
|++|++++|.+..+|. .+..+++|++|++++|.+..+|.. .+..+++|+.|+++.|.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999987 799999999999999999988874 47899999999999997
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=3.2e-12 Score=118.80 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=107.6
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchh-HHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRD-FFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
..+.++++++.++.+|.. -..++++|++++|.++.+++. .+..+++|++|++++|.+....|..++.+++|++|++++
T Consensus 9 ~~~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 346788888888877752 233899999999999888764 588999999999999977777788899999999999999
Q ss_pred CCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 423 SKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 423 ~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
|.+..+++. +..+++|++|++++|+++.+++..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999988765 8899999999999999998866668899999999999988
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=5.2e-12 Score=115.78 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=106.5
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
..+.++..++.+..+|. .-.++|++|++++|.++.+++..+..+++|++|++++|.+....+..++.+++|++|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45667777777777663 23478999999999999988887889999999999999655544555789999999999999
Q ss_pred CCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 424 KIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 424 ~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.+..+|.. +..+++|++|++++|.++.+|...+..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99988875 6889999999999999999998767889999999999998
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.8e-12 Score=116.42 Aligned_cols=128 Identities=24% Similarity=0.247 Sum_probs=113.4
Q ss_pred cceeEeecchhhHh--hhccC-CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEe
Q 037310 343 KEVTRMSLMQIRIR--RLLES-SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLD 419 (656)
Q Consensus 343 ~~~~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 419 (656)
.+++.|+++++.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 68999999999987 77755 8899999999999999888 4488999999999999976666787777899999999
Q ss_pred CCCCCCcccC--ccccCCCCCCeEecCCccccccCh---hhhcCCCCCcEEEeeecCC
Q 037310 420 PARSKIRRLP--MELKYLVHLKRLNLEFTRLTRIPQ---EVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 420 l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~l~~---~~l~~l~~L~~L~l~~~~~ 472 (656)
+++|.+..+| ..+..+++|++|++++|.+..+|. ..+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999887 679999999999999999999887 4588999999999999984
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.9e-12 Score=115.07 Aligned_cols=125 Identities=26% Similarity=0.264 Sum_probs=108.7
Q ss_pred ccceeEeecchhhHh--hhccC-CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEE
Q 037310 342 WKEVTRMSLMQIRIR--RLLES-SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHL 418 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 418 (656)
..+++.|+++++.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 368999999999887 66644 8899999999999999888 448899999999999997666688888889999999
Q ss_pred eCCCCCCcccC--ccccCCCCCCeEecCCccccccCh---hhhcCCCCCcEEEee
Q 037310 419 DPARSKIRRLP--MELKYLVHLKRLNLEFTRLTRIPQ---EVISNLKMLRVLRMY 468 (656)
Q Consensus 419 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~l~~---~~l~~l~~L~~L~l~ 468 (656)
++++|.+..+| ..+..+++|++|++++|.+..+|. ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999875 779999999999999999998887 458889999999875
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=9.7e-12 Score=115.50 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=103.5
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~ 425 (656)
+.++.+++.++.+|.. -.+++++|++++|.++.++ ..|..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677777777777643 2468999999999998887 4588899999999999966666667789999999999999999
Q ss_pred cccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 426 RRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 426 ~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
..+|+ .+..+++|++|++++|.++.+|...+..+++|++|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 98876 58899999999999999999988778889999999999887
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=4.2e-13 Score=148.33 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred ccceeEeecchhhHh-----hhcc-CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCC---ccCccccCCc
Q 037310 342 WKEVTRMSLMQIRIR-----RLLE-SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLP---GHLLTGISNL 412 (656)
Q Consensus 342 ~~~~~~L~l~~~~~~-----~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~p~~~~~L 412 (656)
.++++.|+++++.+. .++. +..+++|++|++.+|.+.+++ ..+..+++|+.|+++.+... ...+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 345666666665543 2222 245667777777777666654 44666777777777643221 2233455566
Q ss_pred ccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccCh-hhhcCCCCCcEEEee
Q 037310 413 VSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQ-EVISNLKMLRVLRMY 468 (656)
Q Consensus 413 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~-~~l~~l~~L~~L~l~ 468 (656)
++|+.|+++++....+|..+..+++|++|++++|.+..... ..+..+++|++|++.
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 66666666665555666666677777777777775433221 224667777777776
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=7e-12 Score=136.29 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=106.8
Q ss_pred eEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC
Q 037310 346 TRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI 425 (656)
Q Consensus 346 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~ 425 (656)
..+.+..+.+..++. ..|++|++++|.++.++. ++.+++|++|++++|.+ ..+|..++.+++|++|+|++|.+
T Consensus 426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCC
Confidence 333344444544443 258999999999998864 88999999999999954 48888999999999999999999
Q ss_pred cccCccccCCCCCCeEecCCcccccc--ChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEE
Q 037310 426 RRLPMELKYLVHLKRLNLEFTRLTRI--PQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLT 502 (656)
Q Consensus 426 ~~lp~~~~~l~~L~~L~l~~~~~~~l--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 502 (656)
..+| .++.+++|++|++++|.++.+ |.. ++.+++|++|++++|.. .........-+..+++|+.|+
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l---------~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSL---------CQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGG---------GGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcC---------CCCccHHHHHHHHCcccCccC
Confidence 9988 799999999999999999988 555 89999999999999983 111112223344577777775
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.4e-11 Score=133.27 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=128.8
Q ss_pred cEEEEcCCCCCCCCCCCcccceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 324 KFLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
..+.+.+..+..+|... .++++.|++++|.+..+| ..+++|++|++++|.++.++. +.. +|++|++++|.+..
T Consensus 62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSC
T ss_pred cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCC
Confidence 34555666666666633 378999999999988888 668899999999999988765 443 89999999995444
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCccccc
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIG 483 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 483 (656)
+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. +. ++|++|++++|.+.
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~---------- 193 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE---------- 193 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS----------
T ss_pred -CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC----------
Confidence 775 68899999999999998887 67899999999999988887 54 88999999999841
Q ss_pred CccccHHHh-hcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccce
Q 037310 484 GREVLVVEI-LSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSE 537 (656)
Q Consensus 484 ~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~ 537 (656)
........+ ...+.|+.|++++|.... ++........+ +.|++++|....
T Consensus 194 ~lp~~~~~L~~~~~~L~~L~Ls~N~l~~---lp~~l~~l~~L-~~L~L~~N~l~~ 244 (571)
T 3cvr_A 194 SLPAVPVRNHHSEETEIFFRCRENRITH---IPENILSLDPT-CTIILEDNPLSS 244 (571)
T ss_dssp SCCCCC--------CCEEEECCSSCCCC---CCGGGGGSCTT-EEEECCSSSCCH
T ss_pred chhhHHHhhhcccccceEEecCCCccee---cCHHHhcCCCC-CEEEeeCCcCCC
Confidence 111111111 112333888888775543 33322224446 788888877654
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=1.8e-13 Score=151.27 Aligned_cols=230 Identities=14% Similarity=0.049 Sum_probs=122.2
Q ss_pred CCCCcceEeccccCCcccc----hhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCC----cccCccccC
Q 037310 363 SSPHLQTLFLGSNDLNEVN----RDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKI----RRLPMELKY 434 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~----~~lp~~~~~ 434 (656)
.+++|++|++++|.++.+. +..+..+++|+.|++++| ....+|..+..+++|+.|+++.+.. ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 3445555555555444221 122334555555555554 2233444455555555555543211 122334555
Q ss_pred CCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccH-HHhhcCCCCcEEEEEecchhhhHh
Q 037310 435 LVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLV-VEILSLQHLNVLTVTLESFCALRM 513 (656)
Q Consensus 435 l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~ 513 (656)
+++|+.|+++.+....+|.. +..+++|++|++++|.. ....+ ..+..+++|+.|++..+ . ....
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l------------~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~ 333 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALL------------ETEDHCTLIQKCPNLEVLETRNV-I-GDRG 333 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCC------------CHHHHHHHHTTCTTCCEEEEEGG-G-HHHH
T ss_pred cccccccCccccchhHHHHH-HhhcCCCcEEecCCCcC------------CHHHHHHHHHhCcCCCEEeccCc-c-CHHH
Confidence 55666666655544455554 66788888888888872 32223 44678899999999832 1 2222
Q ss_pred hhcCcccccccCCceeecc----------cccce---EEEeccccccHHHH-HHhCCCCCCc--cccc-cCCCccEEEEe
Q 037310 514 LLDSPRLQSLSTPSLCLKH----------CCQSE---LLVFNQRRSLLQNI-CISYSKLKHL--TWLI-VAPNLKHVRIS 576 (656)
Q Consensus 514 l~~~~~~~~~ll~~L~l~~----------~~~~~---~~~~~~~~~~L~~L-l~~~~~~~~~--~~l~-~l~~L~~L~l~ 576 (656)
+.........+ +.|++++ |.... +......+++|++| + .|..+... ..+. .+++|++|+++
T Consensus 334 l~~~~~~~~~L-~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 334 LEVLAQYCKQL-KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHCTTC-CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHhCCCC-CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 22222333446 8899984 44433 11112345677777 6 33343332 2344 48899999998
Q ss_pred C---CchhhHHhcccccCCcCcccccCcccccccccccccCCcc
Q 037310 577 S---CLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKN 617 (656)
Q Consensus 577 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 617 (656)
+ |..++..+..++ .+..+.++++|++|.+++|.+
T Consensus 412 ~~~~~n~l~~~p~~~~-------~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 412 LLDREERITDLPLDNG-------VRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp ECSCCSCCSSCCCHHH-------HHHHHHHCTTCCEEEEECCGG
T ss_pred ecCCCccccCchHHHH-------HHHHHHhCCCCCEEEEecCCC
Confidence 4 333432110000 011355799999999987764
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=4.5e-12 Score=142.24 Aligned_cols=113 Identities=24% Similarity=0.234 Sum_probs=74.8
Q ss_pred chhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCC
Q 037310 381 NRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLK 460 (656)
Q Consensus 381 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~ 460 (656)
++..+..+++|+.|+|++|. ...+|..+..+++|++|+|++|.+..+|..++++++|++|+|++|.++.+|.. ++.|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS-GGGGT
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh-hcCCC
Confidence 34556677777777777774 34666666677777777777777777777777777777777777777777766 67777
Q ss_pred CCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 461 MLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
+|++|++++|.+ ...+..++.|++|+.|+++.+..
T Consensus 294 ~L~~L~L~~N~l-------------~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNMV-------------TTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSCC-------------CCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCCC-------------CccChhhhcCCCccEEeCCCCcc
Confidence 777777777762 13344566677777777766543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=112.30 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=106.3
Q ss_pred cceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecCC
Q 037310 367 LQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLEF 445 (656)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~ 445 (656)
-++++++++.++.+|... .++|++|++++| ....+|..+..+++|++|++++|.+..+++ .+.++++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 368899999999887652 368999999999 455788899999999999999999998876 489999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 446 TRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 446 ~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
|.++.+++..+..+++|++|++++|.+ .......+..+++|+.|++..++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDI------------SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCC------------CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCC------------CeeChhhhhcCccccEEEeCCCCe
Confidence 999999987799999999999999983 333334577788888888886653
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=3.9e-10 Score=117.17 Aligned_cols=269 Identities=15% Similarity=0.065 Sum_probs=154.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCC---CCC--CceEEEEEeCChh-hHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDT---PND--FDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRSWNSKSLLEKA 77 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 77 (656)
..+.|.|+|++|+|||++|+.+++..... ... ...++|+++.... +...+...++.++.............+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 35689999999999999999999875111 011 2356788876666 77777788888773222212233445666
Q ss_pred HHHHHhhCCccEEEEEeCCcCchhh--hhh-ccccCCCCCCCcEEEEEceehhhhccc------CCcceEeeccCChhhh
Q 037310 78 EDIFKVMKRKKFVLLLDDIWEPVDL--AQV-GLLVPSATRASNKVVFTTLEFEIGGQM------EAHKSFEVECLGYDDS 148 (656)
Q Consensus 78 ~~l~~~l~~~~~LlVlDdv~~~~~~--~~~-~~~l~~~~~~~~~iliTTR~~~~~~~~------~~~~~~~l~~l~~~ea 148 (656)
..+...+..++.+|||||++..... ... ...+.... .+..+|+||+........ .-...+.+++++.++.
T Consensus 124 ~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 124 DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 6777777776669999999754321 111 22222222 567788888875321111 1113799999999999
Q ss_pred HHHHHHHhcC--CCCCCCCChHHHHHHHHHHcC---CCch-HHHHHHHH--HcC---CCChhHHHHHHHHHhcCcccCCc
Q 037310 149 WKLFEVKVGR--DTLDSHPDIPELAKTVVKECG---GLPL-ALITVGRA--MAS---KKTPREWEHAIEVLSSSAFKFSS 217 (656)
Q Consensus 149 ~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~a~~--l~~---~~~~~~~~~~~~~l~~~~~~~~~ 217 (656)
.++|.+.+.. .....+ ++....+++.++ |.|. ++.++... ++. .-+.+.+...+.....
T Consensus 203 ~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~------- 272 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ------- 272 (384)
T ss_dssp HHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------
Confidence 9999988642 111222 234677788877 8876 44433222 221 1244555555443321
Q ss_pred hHHHHHHHHhcccccCCCCCchhHHHhhccCCCCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHcccccc
Q 037310 218 LAKKLYSSLKLSYDFLPDDASRFCLLYCSLFPEDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHACLLEK 296 (656)
Q Consensus 218 ~~~~~~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~ 296 (656)
..+..+++.|++ ..+..+..++. ..... +..... ...++.+ . . .......+..++..|...++++.
T Consensus 273 ------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~-~~~~~~-~~~~~~~-g-~-~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 273 ------ERLIEAVKALPF-HYKLALRSLIE-SEDVM-SAHKMY-TDLCNKF-K-Q-KPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp ------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHH-HHHHHH-HHHHHHT-T-C-CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred ------chHHHHHHcCCH-HHHHHHHHHHH-hcccC-hHHHHH-HHHHHHc-C-C-CCCCHHHHHHHHHHHHhCCCEEE
Confidence 234445667776 56666655655 11100 111011 1111111 0 0 11233556778999999999987
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.21 E-value=3.7e-10 Score=117.46 Aligned_cols=273 Identities=15% Similarity=0.089 Sum_probs=155.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCC---CCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTP---NDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED 79 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 79 (656)
...+.+.|+|++|+||||+|+.+++...... ..-..++|+++....+...+...++.+++..... ......+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~ 120 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF-TGLSVGEVYER 120 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS-SCCCHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHH
Confidence 3456899999999999999999998751100 0122466888887778888888898888653221 22335555566
Q ss_pred HHHhh--CCccEEEEEeCCcCchhh----hhhcccc---CCCC-CCCcEEEEEceehhhhccc-------CCcceEeecc
Q 037310 80 IFKVM--KRKKFVLLLDDIWEPVDL----AQVGLLV---PSAT-RASNKVVFTTLEFEIGGQM-------EAHKSFEVEC 142 (656)
Q Consensus 80 l~~~l--~~~~~LlVlDdv~~~~~~----~~~~~~l---~~~~-~~~~~iliTTR~~~~~~~~-------~~~~~~~l~~ 142 (656)
+...+ .+++.+||||+++..... +.+...+ .... ..+..+|.||+........ -....+.+++
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCC
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCC
Confidence 66665 356899999999754321 2222211 1110 1456777788766322111 1124689999
Q ss_pred CChhhhHHHHHHHhcC--CCCCCCCChHHHHHHHHHHcC---CCchH-HHHHHH---HHc--CC--CChhHHHHHHHHHh
Q 037310 143 LGYDDSWKLFEVKVGR--DTLDSHPDIPELAKTVVKECG---GLPLA-LITVGR---AMA--SK--KTPREWEHAIEVLS 209 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pla-l~~~a~---~l~--~~--~~~~~~~~~~~~l~ 209 (656)
++.++..+++.+.+.. .....+++. ...+++.++ |.|.. +.++.. ... +. -+.+.+...+....
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDV---VPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSH---HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 9999999999988642 121233333 667777777 99943 333222 111 11 13445555443332
Q ss_pred cCcccCCchHHHHHHHHhcccccCCCCCchhHHHhhc-cCCCCceechhHHHHHHHH--hCccccCCCccHHHhHHHHHH
Q 037310 210 SSAFKFSSLAKKLYSSLKLSYDFLPDDASRFCLLYCS-LFPEDYRISIEDLIDCWIC--EGLLDEYDGIRARNQGYSLIC 286 (656)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~~~~~-~f~~~~~~~~~~l~~~w~~--~~~~~~~~~~~~~~~~~~~l~ 286 (656)
. ..+.-++..+++ ..+..+..++ .+.+...+....+.+.... +.. . ........+..++.
T Consensus 278 ~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~ 340 (387)
T 2v1u_A 278 R-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL-G--LEHVTLRRVSGIIS 340 (387)
T ss_dssp H-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT-T--CCCCCHHHHHHHHH
T ss_pred h-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc-C--CCCCCHHHHHHHHH
Confidence 1 123345667777 5555555454 3332234444433333221 110 0 01123456677899
Q ss_pred HHHHcccccc
Q 037310 287 TLLHACLLEK 296 (656)
Q Consensus 287 ~L~~~~Ll~~ 296 (656)
.|...++++.
T Consensus 341 ~L~~~gli~~ 350 (387)
T 2v1u_A 341 ELDMLGIVKS 350 (387)
T ss_dssp HHHHTTSEEE
T ss_pred HHHhCCCeEE
Confidence 9999999988
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=5.9e-11 Score=110.17 Aligned_cols=125 Identities=22% Similarity=0.224 Sum_probs=108.0
Q ss_pred EEEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc---CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCC
Q 037310 325 FLVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE---SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSL 401 (656)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 401 (656)
.+.+.+.....+|... ..+++.|+++++.+..++. +..+++|++|++++|.++.+.+..|..+++|++|++++|.+
T Consensus 12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4556677777777633 3489999999999988864 68899999999999999999888899999999999999977
Q ss_pred CccCccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCccccc
Q 037310 402 PGHLLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFTRLTR 450 (656)
Q Consensus 402 ~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~ 450 (656)
....|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 776677799999999999999999976 6679999999999999997763
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=3.1e-11 Score=135.40 Aligned_cols=110 Identities=25% Similarity=0.246 Sum_probs=96.0
Q ss_pred cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCC
Q 037310 360 ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLK 439 (656)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~ 439 (656)
.+..+.+|++|++++|.+..++.. +..+++|++|+|++|.+. .+|..++.|++|++|+|++|.+..+|..++++++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 357788999999999999888776 448999999999999554 888889999999999999999999999999999999
Q ss_pred eEecCCccccccChhhhcCCCCCcEEEeeecCC
Q 037310 440 RLNLEFTRLTRIPQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 440 ~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~ 472 (656)
+|++++|.+..+|.. ++.+++|++|++++|..
T Consensus 297 ~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEECCSSCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEECCCCCCCccChh-hhcCCCccEEeCCCCcc
Confidence 999999999999987 89999999999999984
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=1.1e-11 Score=136.95 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=35.3
Q ss_pred CCCcceEeccccCCcccchhHHh-cCCcccEEEccCCCCCcc--CccccCCcccCcEEeCCCCCCcc-----cCccccCC
Q 037310 364 SPHLQTLFLGSNDLNEVNRDFFQ-FMASLRVLTLSDGSLPGH--LLTGISNLVSLQHLDPARSKIRR-----LPMELKYL 435 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~p~~~~~L~~L~~L~l~~~~~~~-----lp~~~~~l 435 (656)
+++|++|++++|.+++.....+. .+++|++|++++|...+. ++..+..+++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 44555555555544433332232 345555555555422111 22222344555555555554332 11222244
Q ss_pred CCCCeEecCCc
Q 037310 436 VHLKRLNLEFT 446 (656)
Q Consensus 436 ~~L~~L~l~~~ 446 (656)
++|+.|++++|
T Consensus 184 ~~L~~L~l~~~ 194 (594)
T 2p1m_B 184 TSLVSLNISCL 194 (594)
T ss_dssp CCCCEEECTTC
T ss_pred CcCcEEEeccc
Confidence 45555555544
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=8.5e-11 Score=127.76 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=107.3
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
.++.|++++|.++.+|.+..+++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCC
Confidence 478999999999999999999999999999999998865 5899999999999999554 477 8999999999999999
Q ss_pred CCccc--CccccCCCCCCeEecCCccccccChh---hhcCCCCCcEEEe
Q 037310 424 KIRRL--PMELKYLVHLKRLNLEFTRLTRIPQE---VISNLKMLRVLRM 467 (656)
Q Consensus 424 ~~~~l--p~~~~~l~~L~~L~l~~~~~~~l~~~---~l~~l~~L~~L~l 467 (656)
.+..+ |..++.+++|+.|++++|.++.+|+. .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99988 88999999999999999999988763 1344889998863
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2.2e-10 Score=104.81 Aligned_cols=127 Identities=19% Similarity=0.275 Sum_probs=106.4
Q ss_pred EEEcCCCCCCCCCCCcccceeEeecchhhHhhhcc--CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCc
Q 037310 326 LVLAGVGLQNAPGIGLWKEVTRMSLMQIRIRRLLE--SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPG 403 (656)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 403 (656)
+.+.+.....+|. ....+++.|+++++.+..++. +..+++|++|++++|.++.+++..+..+++|++|++++|.+..
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 4455566666664 334789999999999988764 5889999999999999999998888999999999999996665
Q ss_pred cCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccCh
Q 037310 404 HLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQ 453 (656)
Q Consensus 404 ~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~ 453 (656)
..+..++.+++|++|++++|.+..+|.. +..+++|++|++++|.+...++
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5555678999999999999999999886 5889999999999997765443
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=3.7e-12 Score=140.79 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCCccEEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcc
Q 037310 567 APNLKHVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKN 617 (656)
Q Consensus 567 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 617 (656)
+++|++|+|++|........ ....++++|++|.+++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHH------------HHHhcCCCcCEEECcCCCC
Confidence 78888888888874333222 1225799999999999876
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=2.1e-09 Score=111.87 Aligned_cols=273 Identities=14% Similarity=0.054 Sum_probs=153.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh-
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM- 84 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 84 (656)
+.+.|+|++|+||||+|+.+++.. .... -..++|+++....+...+...++..++..... ......+....+...+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~-~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY-KDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-hhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHHHHHHHHh
Confidence 389999999999999999999987 2111 13567888777777778888888888653221 2223445555555544
Q ss_pred -CCccEEEEEeCCcCc--hhhhhhccccCCCCC---CCcEEEEEceehhhhcccC-------CcceEeeccCChhhhHHH
Q 037310 85 -KRKKFVLLLDDIWEP--VDLAQVGLLVPSATR---ASNKVVFTTLEFEIGGQME-------AHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 85 -~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~---~~~~iliTTR~~~~~~~~~-------~~~~~~l~~l~~~ea~~L 151 (656)
.+++.+||||+++.. .....+...+..... .+..+|++|+......... ....+.+++++.++..++
T Consensus 122 ~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred hcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 366899999999764 223334333332211 3556777777654322221 123689999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHc---------CCCchHHHHHHHHHc------CC--CChhHHHHHHHHHhcCccc
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKEC---------GGLPLALITVGRAMA------SK--KTPREWEHAIEVLSSSAFK 214 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~a~~l~------~~--~~~~~~~~~~~~l~~~~~~ 214 (656)
+...+.... ....-.++....+++.+ +|.|..+..+..... +. -+.+............
T Consensus 202 l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~--- 277 (389)
T 1fnn_A 202 LLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG--- 277 (389)
T ss_dssp HHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC---
T ss_pred HHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh---
Confidence 988764311 00111245578888988 788754443332211 11 1222333322222211
Q ss_pred CCchHHHHHHHHhcccccCCCCCchhHHHhhccCC---CCceechhHHHHHHHHhCccccCCCccHHHhHHHHHHHHHHc
Q 037310 215 FSSLAKKLYSSLKLSYDFLPDDASRFCLLYCSLFP---EDYRISIEDLIDCWICEGLLDEYDGIRARNQGYSLICTLLHA 291 (656)
Q Consensus 215 ~~~~~~~~~~~l~~s~~~L~~~~~k~~~~~~~~f~---~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 291 (656)
.+.-.+..|++ ..+.++..++.+. .+..+....+...+...--...... ........++..|.+.
T Consensus 278 ----------~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~~ 345 (389)
T 1fnn_A 278 ----------ISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP-RVHSQLWSYLNDLREK 345 (389)
T ss_dssp ----------CCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHT
T ss_pred ----------hHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhC
Confidence 01112445665 5565655555433 2213444444444432100000000 1234566789999999
Q ss_pred cccccc
Q 037310 292 CLLEKE 297 (656)
Q Consensus 292 ~Ll~~~ 297 (656)
+++...
T Consensus 346 gli~~~ 351 (389)
T 1fnn_A 346 GIVETR 351 (389)
T ss_dssp TSSEEE
T ss_pred CCeEEe
Confidence 999884
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.5e-10 Score=103.95 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=76.4
Q ss_pred ceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCc
Q 037310 368 QTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFT 446 (656)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 446 (656)
+.++++++.++.+|... .++|++|++++|.+....|..++.+++|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777777776542 36788888888865555566777888888888888888877765 477888888888888
Q ss_pred cccccChhhhcCCCCCcEEEeeecC
Q 037310 447 RLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 447 ~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.++.+|...+..+++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 8888877667778888888888877
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=2.5e-10 Score=103.54 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=78.5
Q ss_pred CcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecC
Q 037310 366 HLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLE 444 (656)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~ 444 (656)
..++++++++.++.++... .++|++|++++|.+....|..++.+++|++|++++|.+..+|+. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567778877777776542 36788888888865555566788888888888888888877765 5778888888888
Q ss_pred CccccccChhhhcCCCCCcEEEeeecC
Q 037310 445 FTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 445 ~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
+|.++.+|+..+..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888888877667788888888888886
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=2.4e-12 Score=120.35 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=40.4
Q ss_pred HhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCeEecCCccccccChhhhcCCCCCcE
Q 037310 385 FQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRV 464 (656)
Q Consensus 385 ~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~ 464 (656)
+..+++|++|++++|. ...+| .++.+++|++|++++|.+..+|..+..+++|++|++++|.+..+|. ++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~--~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHH--HHHHHHSSE
T ss_pred HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCc--cccCCCCCE
Confidence 4445555555555542 22233 4445555555555555555554444444555555555554444442 444555555
Q ss_pred EEeeecC
Q 037310 465 LRMYECG 471 (656)
Q Consensus 465 L~l~~~~ 471 (656)
|++++|.
T Consensus 120 L~l~~N~ 126 (198)
T 1ds9_A 120 LYMSNNK 126 (198)
T ss_dssp EEESEEE
T ss_pred EECCCCc
Confidence 5555554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=3.3e-10 Score=103.08 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=93.0
Q ss_pred ceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCC
Q 037310 344 EVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARS 423 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~ 423 (656)
..+.++++++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++|.+....+..+..+++|++|++++|
T Consensus 13 ~~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp CSSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3467888888888877532 389999999999999998888999999999999999555443444689999999999999
Q ss_pred CCcccCcc-ccCCCCCCeEecCCccccccChh
Q 037310 424 KIRRLPME-LKYLVHLKRLNLEFTRLTRIPQE 454 (656)
Q Consensus 424 ~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~ 454 (656)
.+..+|+. +..+++|++|++++|.+...+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99999886 89999999999999988876653
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=5.7e-10 Score=101.18 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=93.8
Q ss_pred cceeEeecchhhHhhhccCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCC
Q 037310 343 KEVTRMSLMQIRIRRLLESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPAR 422 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~ 422 (656)
...+.++++++.++.+|... .+++++|++++|.++.+++..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp EETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34567888888888887432 48999999999999999888899999999999999966554455678999999999999
Q ss_pred CCCcccCcc-ccCCCCCCeEecCCccccccCh
Q 037310 423 SKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQ 453 (656)
Q Consensus 423 ~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~ 453 (656)
|.+..+|+. +..+++|++|++++|.+...+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999875 8999999999999997765543
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.03 E-value=1.6e-09 Score=104.75 Aligned_cols=176 Identities=12% Similarity=0.128 Sum_probs=98.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC--CCCCCcccHHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF--SRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~l~~ 82 (656)
.+.+.|+|++|+||||+|+.+++.. .....+.. ..+....... .+....... ...............+.+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVCDNCR----EIEQGRFVDLIEIDAASRTKVEDTRDLLD 116 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS---SCCSCSHHHH----HHHTTCCSSEEEEETTCGGGHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC---CCCcccHHHH----HHhccCCcceEEecCcccccHHHHHHHHH
Confidence 3588999999999999999999876 22111100 0000001110 010000000 000000011111222222
Q ss_pred hh-----CCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhhhc--ccCCcceEeeccCChhhhHHHHH
Q 037310 83 VM-----KRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEIGG--QMEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 83 ~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~--~~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.+ .+++.+||+||++.. ..++.+...+.... .+..+|+||+...... .......+++++++.++..+++.
T Consensus 117 ~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp SCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-CceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 22 356899999999753 33444544444433 5677888876643211 11223578999999999999999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
+.+....... .++....|++.++|.|..+..+...+
T Consensus 196 ~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 196 HILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8876543122 23457889999999999887776544
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=7.9e-12 Score=116.82 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCe
Q 037310 361 SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKR 440 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 440 (656)
+..+++|++|++++|.++.++ .+..+++|++|++++| ....+|..+..+++|++|++++|.+..+| .+..+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 455667777777777776655 3666777777777777 33456666666677777777777777665 4667777777
Q ss_pred EecCCccccccCh-hhhcCCCCCcEEEeeecC
Q 037310 441 LNLEFTRLTRIPQ-EVISNLKMLRVLRMYECG 471 (656)
Q Consensus 441 L~l~~~~~~~l~~-~~l~~l~~L~~L~l~~~~ 471 (656)
|++++|.+..++. ..+..+++|++|++++|.
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 7777777766554 236677777777777776
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.4e-09 Score=113.04 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=146.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.+.|+|++|+||||||+.+++........-..++|+++....+...+...++..++..... ......+....+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGLSIAELYRRLVKA 122 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHH
Confidence 3568999999999999999999987611111023567888766666677777777776543221 222344545555555
Q ss_pred hC--CccEEEEEeCCcCch------hhhhhccccCCCCCCCcEEEEEceehhhhcccC-------CcceEeeccCChhhh
Q 037310 84 MK--RKKFVLLLDDIWEPV------DLAQVGLLVPSATRASNKVVFTTLEFEIGGQME-------AHKSFEVECLGYDDS 148 (656)
Q Consensus 84 l~--~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~~~iliTTR~~~~~~~~~-------~~~~~~l~~l~~~ea 148 (656)
+. +++.+||||+++... .+..+...+......+..+|+||+......... ....+.+++++.++.
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~ 202 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEEL 202 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHH
T ss_pred HhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHH
Confidence 53 458999999996532 222222222111114556777777654322221 114789999999999
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHcC---CCchHH-HHHHHHH--c---CC--CChhHHHHHHHHHhcCcccCCc
Q 037310 149 WKLFEVKVGRDTLDSHPDIPELAKTVVKECG---GLPLAL-ITVGRAM--A---SK--KTPREWEHAIEVLSSSAFKFSS 217 (656)
Q Consensus 149 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~a~~l--~---~~--~~~~~~~~~~~~l~~~~~~~~~ 217 (656)
.+++.+.+.... ....-..+....+++.++ |.|..+ .++.... . +. -+.+.++..+....
T Consensus 203 ~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------- 273 (386)
T 2qby_A 203 EDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------- 273 (386)
T ss_dssp HHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh--------
Confidence 999998754211 011112445667777777 998743 3332211 1 11 13344444433222
Q ss_pred hHHHHHHHHhcccccCCCCCchhHHHhhccCCC-C-ceechhHHHHHHH--HhCccccCCCccHHHhHHHHHHHHHHccc
Q 037310 218 LAKKLYSSLKLSYDFLPDDASRFCLLYCSLFPE-D-YRISIEDLIDCWI--CEGLLDEYDGIRARNQGYSLICTLLHACL 293 (656)
Q Consensus 218 ~~~~~~~~l~~s~~~L~~~~~k~~~~~~~~f~~-~-~~~~~~~l~~~w~--~~~~~~~~~~~~~~~~~~~~l~~L~~~~L 293 (656)
...+.-.+..++. ..+..+..++...+ + ..+....+..... ++.. . .. .........++..|.+.++
T Consensus 274 -----~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~-g-~~-~~~~~~~~~~l~~L~~~gl 344 (386)
T 2qby_A 274 -----RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL-G-VE-AVTQRRVSDIINELDMVGI 344 (386)
T ss_dssp -----HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH-T-CC-CCCHHHHHHHHHHHHHHTS
T ss_pred -----hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc-C-CC-CCCHHHHHHHHHHHHhCCC
Confidence 1223344566666 45555554442211 1 1233332222221 1100 0 00 0122445667888999999
Q ss_pred ccc
Q 037310 294 LEK 296 (656)
Q Consensus 294 l~~ 296 (656)
++.
T Consensus 345 i~~ 347 (386)
T 2qby_A 345 LTA 347 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.93 E-value=4.9e-09 Score=99.61 Aligned_cols=162 Identities=12% Similarity=-0.005 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+.+.|+|++|+|||++|+.+++.. .....-...+.++.+.......+...+....... ....
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 100 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFARTA-----------------PIGG 100 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC-----------------CSTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhccc-----------------CCCc
Confidence 348999999999999999999875 1111112234444443333322222221111100 0113
Q ss_pred CccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhhh-c-ccCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEIG-G-QMEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~~-~-~~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++.+||+||++.. ...+.+...+.... .+.++|+||+..... . .......+.+++++.++..+++.+.+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999764 22334444443333 567788887765321 1 1122337899999999999999988754331
Q ss_pred CCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
.. .++....+++.++|.|..+..+.
T Consensus 180 ~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 180 KI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 13457789999999998654443
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=6.5e-10 Score=112.78 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=144.4
Q ss_pred cccceeEeecchh-hHhhhccCCC-CCCcceEeccccCCc--ccchhHHhcCCcccEEEccCCCCCccCccccCC-----
Q 037310 341 LWKEVTRMSLMQI-RIRRLLESSS-SPHLQTLFLGSNDLN--EVNRDFFQFMASLRVLTLSDGSLPGHLLTGISN----- 411 (656)
Q Consensus 341 ~~~~~~~L~l~~~-~~~~l~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~----- 411 (656)
.+.+++.|.+.++ ....+..+.. +++|++|++++|.+. ..... .++.++.+.+..+. ..+..|.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccc
Confidence 3456777877764 1122222222 888999999999877 22221 22223444444441 11224445
Q ss_pred ---cccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCC---CCc-CCCcc---
Q 037310 412 ---LVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGS---DKQ-EGDSI--- 480 (656)
Q Consensus 412 ---L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~---~~~-~~~~~--- 480 (656)
+++|+.+++.. .+..+++. +..|++|+.+++..+.+..++..++..+.++..+....... ... ....+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 67777654 77777777777777777777776666655555554433110 000 00000
Q ss_pred -------cccCccccHHH----hhcCCCCcEEEEEecchhhhHhhhcCcccccccCCceeecccccceEEE-eccccccH
Q 037310 481 -------LIGGREVLVVE----ILSLQHLNVLTVTLESFCALRMLLDSPRLQSLSTPSLCLKHCCQSELLV-FNQRRSLL 548 (656)
Q Consensus 481 -------~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ll~~L~l~~~~~~~~~~-~~~~~~~L 548 (656)
........... -....++..+.+.+.-. .............+ +.|++.++....++. .+.++.+|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L-~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD--NADFKLIRDYMPNL-VSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC--HHHHHHHHHHCTTC-CEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec--HHHHHHHHHhcCCC-eEEECCCCCcceecHhhhhCCCCC
Confidence 00000011111 11244555555554311 11111111223446 888999887766544 46667788
Q ss_pred HHH-HHhCCCCCCcc--ccccCCCcc-EEEEeCCchhhHHhcccccCCcCcccccCcccccccccccccCCcchhhhcCC
Q 037310 549 QNI-CISYSKLKHLT--WLIVAPNLK-HVRISSCLDLEEIISVEKLGEVSPEVMHNLIPLARIEYLILEDLKNLKSIHSS 624 (656)
Q Consensus 549 ~~L-l~~~~~~~~~~--~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 624 (656)
+.| +.++ +..++ .+..+++|+ .+.+.+ .++.+.. ..+.+|++|+.+.+.+ .+++.|+..
T Consensus 253 ~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 253 LKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNLRYVLATG-DKITTLGDE 315 (329)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTEEEEEECS-SCCCEECTT
T ss_pred CEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccCCEEEeCC-CccCccchh
Confidence 888 7664 44443 466889999 999986 3444433 5788999999999876 456665442
Q ss_pred -CCCCCChh
Q 037310 625 -ALPFPHLQ 632 (656)
Q Consensus 625 -~~~~~~L~ 632 (656)
...+++|+
T Consensus 316 aF~~~~~L~ 324 (329)
T 3sb4_A 316 LFGNGVPSK 324 (329)
T ss_dssp TTCTTCCCC
T ss_pred hhcCCcchh
Confidence 22344444
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=1.5e-08 Score=103.54 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=51.9
Q ss_pred ecchh-hHhhhccCCCCCCcceEeccc-cCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCc
Q 037310 349 SLMQI-RIRRLLESSSSPHLQTLFLGS-NDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIR 426 (656)
Q Consensus 349 ~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~ 426 (656)
+.+++ .++.+|.+..+++|+.|++++ |.+..+++..|..+++|++|+|++|.+....|..|++|++|++|+|++|.+.
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 34444 444454444555555555553 5555555555555555555555555444444444555555555555555555
Q ss_pred ccCccccCCCCCCeEecCCcccc
Q 037310 427 RLPMELKYLVHLKRLNLEFTRLT 449 (656)
Q Consensus 427 ~lp~~~~~l~~L~~L~l~~~~~~ 449 (656)
.+|+.+....+|+.|++.+|.+.
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSCCC
T ss_pred eeCHHHcccCCceEEEeeCCCcc
Confidence 55544322222555555555443
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=2.2e-08 Score=102.26 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=88.2
Q ss_pred ceEecccc-CCcccchhHHhcCCcccEEEccC-CCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCeEecC
Q 037310 368 QTLFLGSN-DLNEVNRDFFQFMASLRVLTLSD-GSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKRLNLE 444 (656)
Q Consensus 368 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~ 444 (656)
..++++++ .++.+|. +..+++|+.|+|++ |.+....+..|+.|++|++|+|++|.+..+|+ .+.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 8988876 88999999999996 75555555789999999999999999998876 57999999999999
Q ss_pred CccccccChhhhcCCCCCcEEEeeecCC
Q 037310 445 FTRLTRIPQEVISNLKMLRVLRMYECGS 472 (656)
Q Consensus 445 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~ 472 (656)
+|++..+|+..+..+. |++|++.+|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 9999999988566565 99999999984
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.66 E-value=2e-07 Score=94.12 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.|.|+|++|+|||++|+.+++.. .. ...+++........++.. .+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~-----------------------~l~~~- 87 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA-----------------------ILANS- 87 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH-----------------------HHTTT-
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH-----------------------HHHHh-
Confidence 4678899999999999999999876 21 233454433222211111 11111
Q ss_pred CCccEEEEEeCCcCchh--hhhhccccCCC--------C---------CCCcEEEEEceehh-hhccc-CC-cceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD--LAQVGLLVPSA--------T---------RASNKVVFTTLEFE-IGGQM-EA-HKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~--~~~~~~~l~~~--------~---------~~~~~iliTTR~~~-~~~~~-~~-~~~~~l~~ 142 (656)
..+..+|++|+++.... .+.+...+... . .+..++|.+|.... +.... .. ...+.+++
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~ 167 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 167 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCC
T ss_pred ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCC
Confidence 13556899999976522 22221111100 0 02345555555432 21111 11 24689999
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
++.++..+++.+.+....... ..+....+++.++|.|..+.-+...+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999988876543222 24557889999999998877666554
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=5.8e-08 Score=97.98 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh-
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM- 84 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 84 (656)
+.+.|+|++|+|||++|+.+++.. ........+++++.+.......+ ..++..+... ...+
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~----------------~~~~~ 104 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL-LGRSYADGVLELNASDDRGIDVV-RNQIKHFAQK----------------KLHLP 104 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-HGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHB----------------CCCCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-cCCcccCCEEEecCccccChHHH-HHHHHHHHhc----------------cccCC
Confidence 348999999999999999999875 11111112444444332222111 1111111100 0011
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehhh-hcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFEI-GGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~~-~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++.++|+||++... ..+.+...+.... .++++|++|+...- ... ......+++.+++.++..+++.+.+....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~ 183 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED 183 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC
Confidence 3568999999997642 3334444443333 55677777765431 111 12234789999999999999998765432
Q ss_pred CCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPL-ALITVG 189 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a 189 (656)
... .++....+++.++|.|. ++..+.
T Consensus 184 ~~~---~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 184 VKY---TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 121 13457889999999995 444443
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=5.1e-08 Score=98.71 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCC
Q 037310 364 SPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPA 421 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~ 421 (656)
+++|+.|.+.. .++.++...|..+++|+.+++..|......+..|....++..+.+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 77777777777 6777777777777777777777774433334445554444444443
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=103.97 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=94.7
Q ss_pred cceeEeecchhhHhhh-----cc-C-CCCCCcceEeccccCCcccchh-HHhcCCcccEEEccCCCCCccCcccc-----
Q 037310 343 KEVTRMSLMQIRIRRL-----LE-S-SSSPHLQTLFLGSNDLNEVNRD-FFQFMASLRVLTLSDGSLPGHLLTGI----- 409 (656)
Q Consensus 343 ~~~~~L~l~~~~~~~l-----~~-~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~----- 409 (656)
.+++.|+++++.+... .. + ...++|++|++++|.++..... ....+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4677777777765432 11 1 2346788888888876644322 23345678888888885443322222
Q ss_pred CCcccCcEEeCCCCCCcc-----cCccccCCCCCCeEecCCccccccC----hhhhcCCCCCcEEEeeecCCCCcCCCcc
Q 037310 410 SNLVSLQHLDPARSKIRR-----LPMELKYLVHLKRLNLEFTRLTRIP----QEVISNLKMLRVLRMYECGSDKQEGDSI 480 (656)
Q Consensus 410 ~~L~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~l~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 480 (656)
...++|++|+|++|.+.. ++..+..+++|++|++++|.+.+.. ...+...++|++|++++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-------- 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-------- 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC--------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC--------
Confidence 245678888888887653 4455667777888888887665432 11255667788888888773
Q ss_pred cccCc--cccHHHhhcCCCCcEEEEEecch
Q 037310 481 LIGGR--EVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 481 ~~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
... ......+...++|+.|+++++..
T Consensus 224 --~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 224 --GDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp --CHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred --CHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 111 12334455667778887776654
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.5e-08 Score=104.01 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCCcceEeccccCCcccchhHHhcC-----CcccEEEccCCCCCccCcccc-CCcccCcEEeCCCCCCcccC-----ccc
Q 037310 364 SPHLQTLFLGSNDLNEVNRDFFQFM-----ASLRVLTLSDGSLPGHLLTGI-SNLVSLQHLDPARSKIRRLP-----MEL 432 (656)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~p~~~-~~L~~L~~L~l~~~~~~~lp-----~~~ 432 (656)
.+.|+.|++++|.++......+..+ ++|+.|+|++|.+.......+ ..+++|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3467777777777665544333322 577777777775443322222 24567777777777765321 222
Q ss_pred -cCCCCCCeEecCCccccc-----cChhhhcCCCCCcEEEeeecCCCCcCCCcccccCc--cccHHHhhcCCCCcEEEEE
Q 037310 433 -KYLVHLKRLNLEFTRLTR-----IPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGR--EVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 433 -~~l~~L~~L~l~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~ 504 (656)
...++|++|++++|.+.. ++.. +..+++|++|++++|.+ ... ......+...++|+.|+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l----------~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGL----------GDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSC----------HHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCC----------CcHHHHHHHHHHhcCCCcCeEECC
Confidence 245677777777776654 2222 45677777777777762 111 1224455666777777777
Q ss_pred ecchhh--hHhhhcCcccccccCCceeecccccc
Q 037310 505 LESFCA--LRMLLDSPRLQSLSTPSLCLKHCCQS 536 (656)
Q Consensus 505 ~~~~~~--~~~l~~~~~~~~~ll~~L~l~~~~~~ 536 (656)
+|.... ...+.........+ +.|++++|...
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L-~~L~Ls~N~i~ 252 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSL-ELLHLYFNELS 252 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSC-CEEECTTSSCC
T ss_pred CCCCCHHHHHHHHHHHHhCCCC-CEEeccCCCCC
Confidence 765422 12222222223335 77777777543
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=2.7e-07 Score=93.21 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh-
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV- 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 83 (656)
.+.+.|+|++|+||||+|+.+++.. .....-...+.+..+.......+...+ ..+...
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 104 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALAREL-FGENWRHNFLELNASDERGINVIREKV--------------------KEFARTK 104 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-HGGGHHHHEEEEETTCHHHHHTTHHHH--------------------HHHHHSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh-cCCcccCceEEeeccccCchHHHHHHH--------------------HHHHhhC
Confidence 3358999999999999999999875 111101123444443322221111111 111111
Q ss_pred -h-CCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhhh-cc-cCCcceEeeccCChhhhHHHHHHHhc
Q 037310 84 -M-KRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEIG-GQ-MEAHKSFEVECLGYDDSWKLFEVKVG 157 (656)
Q Consensus 84 -l-~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~~-~~-~~~~~~~~l~~l~~~ea~~L~~~~~~ 157 (656)
+ .+++.++|+|+++.. ...+.+...+.... .++++|+||....-. .. ......+++++++.++..+++.+.+.
T Consensus 105 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 105 PIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 1 256889999999765 23344444343333 566777777654321 11 11223688999999999999988876
Q ss_pred CCCCCCCCChHHHHHHHHHHcCCCchHHHHHHHHH
Q 037310 158 RDTLDSHPDIPELAKTVVKECGGLPLALITVGRAM 192 (656)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 192 (656)
......+ ++....|++.++|.|..+..+...+
T Consensus 184 ~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 184 NEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5432222 3457889999999998655444433
No 161
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.48 E-value=1.8e-07 Score=98.16 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
...+.|+|++|+||||||+.+++... ....-..+++++... +...+...+... . ...+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~~v~~v~~~~------~~~~~~~~~~~~-------~----~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITSEK------FLNDLVDSMKEG-------K----LNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSSCEEEEEHHH------HHHHHHHHHHTT-------C----HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHHH------HHHHHHHHHHcc-------c----HHHHHHHh
Confidence 45789999999999999999998751 111012345665432 223333333211 0 11233334
Q ss_pred CCccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhHHH
Q 037310 85 KRKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~~L 151 (656)
..+..+|+|||++.... .+.+...+......+..||+||..... ..++.....+.+++.+.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44667999999975432 222333322111156678888876321 22222234688999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
+.+.+.......+++. ...|++.++|.+..+.-+
T Consensus 272 L~~~~~~~~~~i~~e~---l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 272 ARKMLEIEHGELPEEV---LNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHTCCCCTTH---HHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHcCCCCCHHH---HHHHHHhcCCCHHHHHHH
Confidence 9888754332333333 678888999987654433
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=4.3e-07 Score=94.10 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=133.4
Q ss_pred CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCe
Q 037310 361 SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKR 440 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 440 (656)
+.++ +|+.+.+..+ ++.+....|... +|+.+.+..+ ....-+..|..+++|+.+++..|++..+|...-.+.+|+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 4443 6888887766 777777777774 6888888764 5444456788888888888888888888776444678888
Q ss_pred EecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecchhhhHhh-hcCcc
Q 037310 441 LNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESFCALRML-LDSPR 519 (656)
Q Consensus 441 L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l-~~~~~ 519 (656)
+.+..+ ++.++..++.++++|+.+.+..+- .......+.+ .+|+.+.+... +..+ ...+.
T Consensus 208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-------------~~I~~~aF~~-~~L~~i~lp~~----i~~I~~~aF~ 268 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-------------STIGQEAFRE-SGITTVKLPNG----VTNIASRAFY 268 (401)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCEECCTTC-------------CEECTTTTTT-CCCSEEEEETT----CCEECTTTTT
T ss_pred EEeCCc-hheehhhHhhCCCCCCEEecCCCc-------------cCcccccccc-CCccEEEeCCC----ccEEChhHhh
Confidence 888754 777777778888888888886542 2222233444 46677766421 1111 12233
Q ss_pred cccccCCceeecccccc-----eEE-EeccccccHHHH-HHhCCCCCCcc--ccccCCCccEEEEeCCchhhHHhccccc
Q 037310 520 LQSLSTPSLCLKHCCQS-----ELL-VFNQRRSLLQNI-CISYSKLKHLT--WLIVAPNLKHVRISSCLDLEEIISVEKL 590 (656)
Q Consensus 520 ~~~~ll~~L~l~~~~~~-----~~~-~~~~~~~~L~~L-l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 590 (656)
.+..+ +.+.+.++... .+. ..+.++++|+.+ +.. .+..+. .+..+++|+.+.|..+ ++.+..
T Consensus 269 ~c~~L-~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~---- 339 (401)
T 4fdw_A 269 YCPEL-AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINF---- 339 (401)
T ss_dssp TCTTC-CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECT----
T ss_pred CCCCC-CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcH----
Confidence 33344 66666554332 121 134445566666 543 233332 3557888999998653 333322
Q ss_pred CCcCcccccCcccccccccccccCC
Q 037310 591 GEVSPEVMHNLIPLARIEYLILEDL 615 (656)
Q Consensus 591 ~~~~~~~~~~~~~~~~L~~L~l~~~ 615 (656)
..+.++ +|+.+.+.+.
T Consensus 340 --------~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 340 --------SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp --------TSSSSS-CCCEEEECCS
T ss_pred --------HhCCCC-CCCEEEEcCC
Confidence 467788 8999998874
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=1.3e-07 Score=90.83 Aligned_cols=153 Identities=9% Similarity=0.085 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.+.|+|++|+||||+|+.+++.. . .....+.|+++...... +... + +.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~~~~~~------~~~~-------------------~-~~ 101 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLGIHASI------STAL-------------------L-EG 101 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGGGGGGS------CGGG-------------------G-TT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHHH------HHHH-------------------H-Hh
Confidence 35678999999999999999999886 2 11234567766432110 0000 0 01
Q ss_pred hCCccEEEEEeCCcCchh----hhhhccccCCCCCCC-cEEEEEceehhh---------hcccCCcceEeeccCChhhhH
Q 037310 84 MKRKKFVLLLDDIWEPVD----LAQVGLLVPSATRAS-NKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSW 149 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~-~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~ 149 (656)
+ .++.+||+||++.... .+.+...+......+ .++|+||+...- ..++.....+++++++.++..
T Consensus 102 ~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 102 L-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp G-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred c-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 1 3456899999975422 222222221111022 247777664321 111111257899999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 150 KLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 150 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
+++.+.+....... .++....+++.++|.+..+..+.
T Consensus 181 ~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 181 AALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 99998875433222 24557788999999876655443
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.5e-06 Score=85.86 Aligned_cols=153 Identities=7% Similarity=0.023 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCC--CC-c-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPN--DF-D-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAE 78 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~--~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 78 (656)
+..+.+.|+|++|+|||++|+.++++...... .. + .++++++....+...+...|++++..... ......+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~--~~~~~~~~L~ 120 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL--CGDISLEALN 120 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC----CCCCHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC--CchHHHHHHH
Confidence 45678899999999999999999988721111 11 1 45678877777888888999999864321 1222233333
Q ss_pred HHHHhh---CCccEEEEEeCCcCchhhhhhcccc--CCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCC
Q 037310 79 DIFKVM---KRKKFVLLLDDIWEPVDLAQVGLLV--PSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLG 144 (656)
Q Consensus 79 ~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l--~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~ 144 (656)
.+...+ .+++++++||+++...+-+.+...+ +........+|.++..... ..++ ....+.+++.+
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~-~~~~i~F~pYt 199 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKA-HFTEIKLNKVD 199 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHT-TEEEEECCCCC
T ss_pred HHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccC-CceEEEeCCCC
Confidence 333333 4578999999998764222222222 1111012223333433211 1122 12468899999
Q ss_pred hhhhHHHHHHHhcC
Q 037310 145 YDDSWKLFEVKVGR 158 (656)
Q Consensus 145 ~~ea~~L~~~~~~~ 158 (656)
.+|-.+++.+++..
T Consensus 200 ~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 200 KNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988743
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=1.1e-06 Score=88.44 Aligned_cols=157 Identities=12% Similarity=0.071 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh-
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFD-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV- 83 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 83 (656)
+.+.|+|++|+|||++|+.+++.. . ...+. ..+.++.+..... ....+....+...
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l-~-~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 96 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL-F-GENWRDNFIEMNASDERGI--------------------DVVRHKIKEFARTA 96 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH-H-TTCHHHHCEEEETTSTTCT--------------------TTSSHHHHHHHHSC
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh-c-CCcccCCeEEEeCccccCh--------------------HHHHHHHHHHHhcC
Confidence 348999999999999999999875 1 11111 2334443321110 0011111111111
Q ss_pred -h-CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhc
Q 037310 84 -M-KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVG 157 (656)
Q Consensus 84 -l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~ 157 (656)
+ .+++.++|+|+++... ..+.+...+.... .+.++|++|.... +... ......+++.+++.++..+++.+.+.
T Consensus 97 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 97 PIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-SSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 1 2568899999997652 2344555554433 5566777765543 1111 12234789999999999999988876
Q ss_pred CCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 158 RDTLDSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
...... .++....+++.++|.+..+...
T Consensus 176 ~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 176 KEGVKI---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCCCB---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred HcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 544222 2345778889999988754433
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.35 E-value=1.5e-06 Score=89.41 Aligned_cols=173 Identities=10% Similarity=0.101 Sum_probs=92.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhC-----CCCC-CCCcccHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIG-----LFSR-SWNSKSLLEKAE 78 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~-~~~~~~~~~~~~ 78 (656)
.+.+.|+|++|+||||+|+.+++.. ....... ...+....+. ..+..... .... ........+...
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT---ATPCGVCDNC----REIEQGRFVDLIEIDAASRTKVEDTRDLLD 109 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC---SSCCSSSHHH----HHHHTSCCSSCEEEETTCSCCSSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC---CCCCcccHHH----HHHhccCCCceEEecccccCCHHHHHHHHH
Confidence 3578899999999999999999876 2211111 0011111111 11111000 0000 001112222222
Q ss_pred HHHHh-hCCccEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehh-hhc-ccCCcceEeeccCChhhhHHHHH
Q 037310 79 DIFKV-MKRKKFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFE-IGG-QMEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 79 ~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~-~~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
.+... ..+++.++|+||++.. ...+.+...+.... .+..+|++|.... +.. .......+++.+++.++..+++.
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-SSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-CceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHH
Confidence 21111 1356789999999754 23444444443332 4556666665432 111 11223578999999999999998
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
+.+....... ..+....|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 189 HILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 8764432111 13457789999999998766544
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=1e-06 Score=91.29 Aligned_cols=211 Identities=10% Similarity=0.110 Sum_probs=132.9
Q ss_pred ceeEeecchhhHhhhc--cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCC
Q 037310 344 EVTRMSLMQIRIRRLL--ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPA 421 (656)
Q Consensus 344 ~~~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~ 421 (656)
+++.+.+..+ ++.+. .+.+ .+|+.+.+.. .+..+....|..+++|+.+++..|+....-...+. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5777776554 44443 3445 3688888876 57778777888899999999988744333333444 5788888887
Q ss_pred CCCCcccCc-cccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcE
Q 037310 422 RSKIRRLPM-ELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNV 500 (656)
Q Consensus 422 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 500 (656)
. ++..++. .+.++++|+.+.+..+ ++.++..++.+ .+|+.+.+..+- .......+.++++|+.
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i-------------~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGV-------------TNIASRAFYYCPELAE 275 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTC-------------CEECTTTTTTCTTCCE
T ss_pred C-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCc-------------cEEChhHhhCCCCCCE
Confidence 4 4777765 4788888999988775 77788777776 788888884332 3344556778888888
Q ss_pred EEEEecchh--hhHhh-hcCcccccccCCceeecccccceEE-EeccccccHHHH-HHhCCCCCCcc--ccccCCCccEE
Q 037310 501 LTVTLESFC--ALRML-LDSPRLQSLSTPSLCLKHCCQSELL-VFNQRRSLLQNI-CISYSKLKHLT--WLIVAPNLKHV 573 (656)
Q Consensus 501 L~l~~~~~~--~~~~l-~~~~~~~~~ll~~L~l~~~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~~--~l~~l~~L~~L 573 (656)
+.+..+... ....+ ...+..+..+ +.+.+.+. ...+. ..+.++.+|+.+ +.. .+..+. .+..+ +|+.+
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L-~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKL-ARFEIPES-IRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTC-CEECCCTT-CCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEE
T ss_pred EEeCCccccCCcccEECHHHhhCCccC-CeEEeCCc-eEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEE
Confidence 888754321 00011 1223333345 66666532 22221 134445566666 643 233332 35567 99999
Q ss_pred EEeCCc
Q 037310 574 RISSCL 579 (656)
Q Consensus 574 ~l~~~~ 579 (656)
.+.++.
T Consensus 351 ~l~~n~ 356 (401)
T 4fdw_A 351 KVEGTT 356 (401)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 998875
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=1.3e-05 Score=78.30 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+.|.|+|++|+|||++|+.+++.. . +..+ .+.... .+.. .............+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~--~~~~-~i~~~~-------------~~~g---~~~~~~~~~~~~~~~~~ 120 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---N--FPFI-KICSPD-------------KMIG---FSETAKCQAMKKIFDDA 120 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---T--CSEE-EEECGG-------------GCTT---CCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---C--CCEE-EEeCHH-------------HhcC---CchHHHHHHHHHHHHHH
Confidence 35678999999999999999999975 2 2222 222221 0000 00000111222233333
Q ss_pred hCCccEEEEEeCCcCc------------hhhhhhccccCCC--CCCCcEEEEEceehhhhcc---cCC-cceEeeccCCh
Q 037310 84 MKRKKFVLLLDDIWEP------------VDLAQVGLLVPSA--TRASNKVVFTTLEFEIGGQ---MEA-HKSFEVECLGY 145 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~------------~~~~~~~~~l~~~--~~~~~~iliTTR~~~~~~~---~~~-~~~~~l~~l~~ 145 (656)
...+..+|+||+++.. ..+..+...+... ......||.||........ ... ...+.+++++.
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 3467889999998643 0112232222221 1023335556665533221 111 34578888888
Q ss_pred -hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC------chHHHHHHHHHcCCCChhHHHHHHHHHhcC
Q 037310 146 -DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL------PLALITVGRAMASKKTPREWEHAIEVLSSS 211 (656)
Q Consensus 146 -~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Plal~~~a~~l~~~~~~~~~~~~~~~l~~~ 211 (656)
++..+++.+.. .. ..+....+++.+.|. ..++.++-.. ........++.+++.+...
T Consensus 201 r~~i~~i~~~~~-----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 201 GEQLLEALELLG-----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHHT-----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-----CC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHHHHHc
Confidence 56666655421 11 134577888888884 3333333322 2223455666666666554
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=4.9e-06 Score=89.29 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCC-CCCcccHHHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSR-SWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~l~~~ 83 (656)
.+.+.|+|++|+||||+|+.+++.. .+ .++.++.+.......+. ..+........ ........+ ...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-----~~~ 144 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASDVRSKTLLN-AGVKNALDNMSVVGYFKHNEE-----AQN 144 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTSCCCHHHHH-HTGGGGTTBCCSTTTTTC---------CC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCCcchHHHHH-HHHHHHhccccHHHHHhhhhh-----hhh
Confidence 4789999999999999999999976 22 34455555443332221 11111111000 000000000 001
Q ss_pred hCCccEEEEEeCCcCchh-----hhhhccccCCCCCCCcEEEEEceehh---hhcccCCcceEeeccCChhhhHHHHHHH
Q 037310 84 MKRKKFVLLLDDIWEPVD-----LAQVGLLVPSATRASNKVVFTTLEFE---IGGQMEAHKSFEVECLGYDDSWKLFEVK 155 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~~~iliTTR~~~---~~~~~~~~~~~~l~~l~~~ea~~L~~~~ 155 (656)
..+++.+||||+++.... +..+...+... . ..||+++.... +.........+.+++++.++..+++.+.
T Consensus 145 ~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~-~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 145 LNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--S-TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp SSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--S-SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--C-CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHH
Confidence 235788999999976422 13333333322 2 33444443322 2222122346889999999999999887
Q ss_pred hcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHH
Q 037310 156 VGRDTLDSHPDIPELAKTVVKECGGL-PLALITVG 189 (656)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a 189 (656)
+.......+++ ....|++.++|. +.++..+.
T Consensus 222 ~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 222 AIREKFKLDPN---VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHH
Confidence 75433233333 377899999995 45555553
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=1.2e-05 Score=79.30 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
..+-+.|+|++|+|||++|+.+++.. .. ..+.+..+... . .............+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~--------------~---~~~~~~~~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELV--------------K---KFIGEGASLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGC--------------C---CSTTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHH--------------H---hccchHHHHHHHHHHHH
Confidence 34568999999999999999999976 21 12233321110 0 00111111222222333
Q ss_pred hCCccEEEEEeCCcCch----------------hhhhhccccCC-CCCCCcEEEEEceehhhhcc-----cCCcceEeec
Q 037310 84 MKRKKFVLLLDDIWEPV----------------DLAQVGLLVPS-ATRASNKVVFTTLEFEIGGQ-----MEAHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~~~~~iliTTR~~~~~~~-----~~~~~~~~l~ 141 (656)
....+.+|+||+++... .+..+...+.. ....+..||.||........ -.-...+.++
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC
Confidence 34567899999996431 01111111111 11134566777765433211 0112368899
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITV 188 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 188 (656)
..+.++..+++...+.........+ ...+++.+.|. |-.+..+
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 9999999999998876544222222 56777887774 4444443
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.25 E-value=2.4e-05 Score=75.89 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||++|+.+++.. .. ..+.++.+...+ . ............+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~---~~~~~~~~~~~~-------------~----~~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QV---PFLAMAGAEFVE-------------V----IGGLGAARVRSLFKEAR 95 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TC---CEEEEETTTTSS-------------S----STTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEechHHHHh-------------h----ccChhHHHHHHHHHHHH
Confidence 4568899999999999999999976 22 233444432110 0 00111111222233333
Q ss_pred CCccEEEEEeCCcCch-----------------hhhhhccccCCC-CCCCcEEEEEceehhhhc-cc-C---CcceEeec
Q 037310 85 KRKKFVLLLDDIWEPV-----------------DLAQVGLLVPSA-TRASNKVVFTTLEFEIGG-QM-E---AHKSFEVE 141 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~-----------------~~~~~~~~l~~~-~~~~~~iliTTR~~~~~~-~~-~---~~~~~~l~ 141 (656)
...+.+|+||+++... .+..+...+... ...+..+|.||....... .. . -...+.++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 3467899999997541 011222222221 113344555554433211 11 1 12467788
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL-ALITVG 189 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a 189 (656)
..+.++..+++...+..... ..........+++.+.|++- .|..+.
T Consensus 176 ~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999887755431 22223335778888888754 444443
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=2.6e-06 Score=85.73 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
...+.|+|++|+||||||+.+++.... . . ..+++++... +...+...+.. .... .+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~-~-~-~~~~~i~~~~------~~~~~~~~~~~-------~~~~----~~~~~~ 96 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK-R-G-YRVIYSSADD------FAQAMVEHLKK-------GTIN----EFRNMY 96 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH-T-T-CCEEEEEHHH------HHHHHHHHHHH-------TCHH----HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-C-C-CEEEEEEHHH------HHHHHHHHHHc-------CcHH----HHHHHh
Confidence 456899999999999999999987611 1 1 2345665432 22223222211 0111 122222
Q ss_pred CCccEEEEEeCCcCchh----hhhhccccCCCCCCCcEEEEEceehhh---------hcccCCcceEeeccCChhhhHHH
Q 037310 85 KRKKFVLLLDDIWEPVD----LAQVGLLVPSATRASNKVVFTTLEFEI---------GGQMEAHKSFEVECLGYDDSWKL 151 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTTR~~~~---------~~~~~~~~~~~l~~l~~~ea~~L 151 (656)
.+..+|++||++.... .+.+...+......+..+|+||..... ..++.....+++++ +.++..++
T Consensus 97 -~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 97 -KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp -HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred -cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 2356999999975432 122222222111145567777754321 11222224688999 99999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 152 FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
+.+.+.......+ ++....|++.+ |....
T Consensus 175 l~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 175 IKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 9988764432222 44577788888 76543
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=2.1e-05 Score=79.35 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=58.2
Q ss_pred CccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++.++|+|+++... ..+.+...+.... .++.+|++|.+.. +... ......+++++++.++..+.+.+.. .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~-~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPP-AETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C-
Confidence 567899999998653 2344444444333 4566666665542 2111 1223478999999999999998765 1
Q ss_pred CCCCChHHHHHHHHHHcCCCchHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLAL 185 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal 185 (656)
. .++.+..+++.++|.|..+
T Consensus 182 -~---~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 182 -M---SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp -C---CHHHHHHHHHHTTTCHHHH
T ss_pred -C---CHHHHHHHHHHcCCCHHHH
Confidence 1 1344678999999998654
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.13 E-value=5.6e-05 Score=75.65 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||+||+.+++.. . . ...+.++.+.-. . .............+...-
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~-~---~-~~~~~i~~~~l~--------------~---~~~g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA-N---N-STFFSISSSDLV--------------S---KWLGESEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT-T---S-CEEEEEECCSSC--------------C---SSCCSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHc-C---C-CcEEEEEhHHHH--------------h---hhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999875 1 1 122334433111 0 001111222222222222
Q ss_pred CCccEEEEEeCCcCchh-------------hhhhccccCCC--CCCCcEEEEEceehhhhcc-c--CCcceEeeccCChh
Q 037310 85 KRKKFVLLLDDIWEPVD-------------LAQVGLLVPSA--TRASNKVVFTTLEFEIGGQ-M--EAHKSFEVECLGYD 146 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~--~~~~~~iliTTR~~~~~~~-~--~~~~~~~l~~l~~~ 146 (656)
..++.+|+||+++.... ..++...+... ...+..||.||........ . .-...+.++..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 45788999999975410 11111111111 1133344445544322110 0 12245778888899
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 037310 147 DSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITVGR 190 (656)
Q Consensus 147 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~ 190 (656)
+..+++...+....... .+.....|++.+.|+ +-.|..+..
T Consensus 183 ~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999988876543111 234578899999887 444555544
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=8.8e-06 Score=81.27 Aligned_cols=132 Identities=10% Similarity=0.090 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCc--eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFD--LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
...|.|+|++|+|||++|+.+++.. ....... ..+.++.+. +.. .............+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~--------------l~~---~~~g~~~~~~~~~~~~ 128 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRDD--------------LVG---QYIGHTAPKTKEVLKR 128 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGGG--------------TCC---SSTTCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHHH--------------hhh---hcccccHHHHHHHHHh
Confidence 3468999999999999999888776 1112211 222332111 100 0011111222222222
Q ss_pred hhCCccEEEEEeCCcCc-----------hhhhhhccccCCCCCCCcEEEEEceehh----------hhcccCCcceEeec
Q 037310 83 VMKRKKFVLLLDDIWEP-----------VDLAQVGLLVPSATRASNKVVFTTLEFE----------IGGQMEAHKSFEVE 141 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~~~iliTTR~~~----------~~~~~~~~~~~~l~ 141 (656)
. +..+|+||+++.. .....+...+.... .+..+|.||.... +..++ ...+.++
T Consensus 129 ~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~ 202 (309)
T 3syl_A 129 A---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFP 202 (309)
T ss_dssp H---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEEC
T ss_pred c---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcC
Confidence 2 3359999999733 22334444443333 4566777775432 22221 2578999
Q ss_pred cCChhhhHHHHHHHhcCCC
Q 037310 142 CLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~ 160 (656)
+++.++..+++.+.+....
T Consensus 203 ~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 203 DYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp CCCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHcC
Confidence 9999999999988876543
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=7e-06 Score=83.76 Aligned_cols=100 Identities=5% Similarity=0.051 Sum_probs=59.9
Q ss_pred CccEEEEEeCCcCchh--hhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcCCCC
Q 037310 86 RKKFVLLLDDIWEPVD--LAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDTL 161 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~~ 161 (656)
+++-++|+|+++.... ...+...+.... .+..+|++|.+.. +... ......+++++++.++..+.+.+.+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 4677999999976421 223333333322 4566666665532 2111 122357899999999999999887754332
Q ss_pred CCCCChHHHHHHHHHHcCCCchHHHHH
Q 037310 162 DSHPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
..+. ++....|++.++|.+..+..+
T Consensus 212 ~~~~--~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 QLET--KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EECC--SHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCc--HHHHHHHHHHcCCCHHHHHHH
Confidence 2220 234788999999987654433
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.06 E-value=3.7e-05 Score=77.82 Aligned_cols=149 Identities=12% Similarity=0.054 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.|.|+|++|+|||++|+.+++.. ... .+.++....... ......+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~-----------------------~~~~~~~~~-- 103 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKS-----------------------GDLAAILTN-- 103 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSH-----------------------HHHHHHHHT--
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccch-----------------------hHHHHHHHh--
Confidence 4568999999999999999999876 222 223333211111 111111111
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCC-----------------CCCcEEEEEceehhh-----hcccCCcceEee
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSAT-----------------RASNKVVFTTLEFEI-----GGQMEAHKSFEV 140 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~-----------------~~~~~iliTTR~~~~-----~~~~~~~~~~~l 140 (656)
..+..+|+||+++... ....+...+.... .++..+|.+|..... ..+ -...+.+
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R--~~~~i~l 181 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR--FGMQFRL 181 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT--CSEEEEC
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh--cCEEeeC
Confidence 2456789999997542 1222222111110 012445555554321 222 1256899
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALITVG 189 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 189 (656)
++++.++..+++.+.+....... ..+....+++.+.|.|..+..+.
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999988876433111 23457788889999986554443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.06 E-value=2.5e-05 Score=81.69 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=85.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.+.|+|++|+||||+|+.+++.. ...| ..++... ....++. .+.... .....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~ir-~~~~~a------------------~~~~~ 103 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKEIR-EAIERA------------------RQNRN 103 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHHHH-HHHHHH------------------HHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHHHH-HHHHHH------------------HHhhh
Confidence 4578999999999999999999976 2222 1222211 1111111 111100 00111
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEE-Eceehhh---hcccCCcceEeeccCChhhhHHHHHHHhcC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVF-TTLEFEI---GGQMEAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TTR~~~~---~~~~~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
.+++.+|+||+++... ..+.+...+.. ....+|. ||.+... .........+.+++++.++..+++.+.+..
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED---GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT---TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc---CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 4678899999997652 23333333333 2233333 4444321 111122347889999999999999988764
Q ss_pred CCCC---C-CCChHHHHHHHHHHcCCCchHHHHH
Q 037310 159 DTLD---S-HPDIPELAKTVVKECGGLPLALITV 188 (656)
Q Consensus 159 ~~~~---~-~~~~~~~~~~i~~~~~g~Plal~~~ 188 (656)
.... . ..-.++....|++.++|.+..+.-+
T Consensus 181 ~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 181 KTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2100 0 1112455778888899987654443
No 179
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=4.6e-06 Score=76.68 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.+.|+|++|+|||++|+.+++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34668899999999999999999875
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.02 E-value=8.7e-05 Score=73.47 Aligned_cols=157 Identities=12% Similarity=0.047 Sum_probs=83.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH-HHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED-IFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~ 83 (656)
.+.|.|+|++|+|||++|+.++... .. ..+.++.+... . . ........... +...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~--------------~---~-~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLT--------------S---K-YVGDGEKLVRALFAVA 109 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTS--------------S---S-SCSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHh--------------h---c-ccchHHHHHHHHHHHH
Confidence 4688999999999999999999976 21 22334432211 0 0 01111222222 2222
Q ss_pred hCCccEEEEEeCCcCchh-------------hhhhccc---cCCCC-CCCcEEEEEceehh-----hhcccCCcceEeec
Q 037310 84 MKRKKFVLLLDDIWEPVD-------------LAQVGLL---VPSAT-RASNKVVFTTLEFE-----IGGQMEAHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~-~~~~~iliTTR~~~-----~~~~~~~~~~~~l~ 141 (656)
...++.+|++|+++.... ...+... ++... ..+..||.||.... +.+++ ...+.++
T Consensus 110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~ 187 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRVYVS 187 (297)
T ss_dssp HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEEECC
T ss_pred HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEEEeC
Confidence 245678999999965411 0011111 11111 02334555555432 12221 2456777
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL-ALITVGR 190 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 190 (656)
..+.++..+++.+.+....... ..+....+++.+.|.+- ++..+..
T Consensus 188 ~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 188 LPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7788888888887765433111 13456788999999875 5544433
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=5.9e-05 Score=76.73 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=85.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH-HHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED-IFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~ 82 (656)
..+.|.|+|++|+|||++|+.+++.. . . ..+.++++.-.. . . .......... +..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~--~-~~~~i~~~~l~~--------------~---~-~g~~~~~~~~~~~~ 171 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---G--A-TFFSISASSLTS--------------K---W-VGEGEKMVRALFAV 171 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---T--C-EEEEEEGGGGCC--------------S---S-TTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---C--C-eEEEEehHHhhc--------------c---c-cchHHHHHHHHHHH
Confidence 35678999999999999999999875 1 1 233444432110 0 0 0011111222 222
Q ss_pred hhCCccEEEEEeCCcCch-------------hhhhhccccCC---CCCCCcEEEEEceehhh-----hcccCCcceEeec
Q 037310 83 VMKRKKFVLLLDDIWEPV-------------DLAQVGLLVPS---ATRASNKVVFTTLEFEI-----GGQMEAHKSFEVE 141 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~---~~~~~~~iliTTR~~~~-----~~~~~~~~~~~l~ 141 (656)
.-..++.+|+||+++... ....+...+.. ....+..||.||..... .++ -...+.++
T Consensus 172 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R--f~~~i~i~ 249 (357)
T 3d8b_A 172 ARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR--LVKRLYIP 249 (357)
T ss_dssp HHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT--CCEEEECC
T ss_pred HHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh--CceEEEeC
Confidence 223567899999995431 01122222211 11123344445544321 121 12457788
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITVGR 190 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~ 190 (656)
..+.++..+++...+....... .+.....|++.+.|+ +..|..+..
T Consensus 250 ~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 250 LPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8889999999888775433111 134578899999885 555555544
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.00 E-value=5.8e-05 Score=75.64 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH-HHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED-IFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~ 83 (656)
.+-|.|+|++|+|||++|+.+++.. ... .+.++.+ ++ .... ....+..... +...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------~l----~~~~--------~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------DL----VSKW--------MGESEKLVKQLFAMA 106 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------HH----HTTT--------GGGHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------HH----hhcc--------cchHHHHHHHHHHHH
Confidence 3568999999999999999999986 222 2233321 11 1000 1111222222 2222
Q ss_pred hCCccEEEEEeCCcCchh-------------hhhhccccCCC--CCCCcEEEEEceehhhhcc-c--CCcceEeeccCCh
Q 037310 84 MKRKKFVLLLDDIWEPVD-------------LAQVGLLVPSA--TRASNKVVFTTLEFEIGGQ-M--EAHKSFEVECLGY 145 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~--~~~~~~iliTTR~~~~~~~-~--~~~~~~~l~~l~~ 145 (656)
-..++.+|+||+++.... ...+...+... ...+..||.||........ . .-...+.++..+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence 245678999999975411 12222222111 1134444546554332110 0 1124577888899
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITVGR 190 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~ 190 (656)
++..++|...+....... .+.....|++.+.|+ +-.|..+..
T Consensus 187 ~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 187 AARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999998886543111 234577888988875 445544443
No 183
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=1.3e-05 Score=81.75 Aligned_cols=170 Identities=12% Similarity=0.137 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCC-ceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDF-DLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
+.+.|+|++|+||||+|+.+++.. .....+ ..+..++.+.......+... ............... .....-
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 130 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNASDERGISIVREK-VKNFARLTVSKPSKH------DLENYP 130 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-HHHHHHTTSEEEECSSSCCCHHHHTTH-HHHHHHSCCCCCCTT------HHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCcccccceEEEccccccchHHHHHH-HHHHhhhcccccchh------hcccCC
Confidence 348899999999999999999875 100001 12334444332222222111 111110000000000 001111
Q ss_pred CCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcCCC
Q 037310 85 KRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGRDT 160 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~~~ 160 (656)
.+++.++++|+++... ....+...+.... ...++|++|.... +... ......+.+.+++.++..+.+.+.+....
T Consensus 131 ~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 131 CPPYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 2456799999997542 2333433333332 4456666664432 1111 11123688999999999999988876543
Q ss_pred CCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 161 LDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
...+ ++....|++.++|.|..+..
T Consensus 210 ~~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 210 VKCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp CCCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222 45578899999999876443
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.99 E-value=1.4e-05 Score=82.06 Aligned_cols=92 Identities=8% Similarity=0.064 Sum_probs=54.0
Q ss_pred cEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEcee-----------------hhhhcccCCcceEeeccCChhhh
Q 037310 88 KFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLE-----------------FEIGGQMEAHKSFEVECLGYDDS 148 (656)
Q Consensus 88 ~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~-----------------~~~~~~~~~~~~~~l~~l~~~ea 148 (656)
+.+|+||+++.. ...+.+...+... ....++++|.. +.+.++ ...+.+++++.++.
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDT 264 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHH
Confidence 359999999754 2233333333332 22334444431 112222 23479999999999
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHcC-CCchHHHH
Q 037310 149 WKLFEVKVGRDTLDSHPDIPELAKTVVKECG-GLPLALIT 187 (656)
Q Consensus 149 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~ 187 (656)
.+++.+.+....... .++....+++.+. |.|..+..
T Consensus 265 ~~il~~~~~~~~~~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 265 KQILRIRCEEEDVEM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHHTTCCB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 999998876543222 2345778888887 77654443
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=3.3e-05 Score=77.59 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=82.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh-
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV- 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 83 (656)
.+++.+.|++|+|||++|+.+++.. ...+++++.+... ...+. ..+... ...
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~~-~~~i~-~~~~~~-------------------~~~~ 100 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDCK-IDFVR-GPLTNF-------------------ASAA 100 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTCC-HHHHH-THHHHH-------------------HHBC
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEcccccC-HHHHH-HHHHHH-------------------Hhhc
Confidence 4577888899999999999999876 1234455543321 21111 111111 111
Q ss_pred -hCCccEEEEEeCCcCch---hhhhhccccCCCCCCCcEEEEEceehhh-hccc-CCcceEeeccCChhhhHHH------
Q 037310 84 -MKRKKFVLLLDDIWEPV---DLAQVGLLVPSATRASNKVVFTTLEFEI-GGQM-EAHKSFEVECLGYDDSWKL------ 151 (656)
Q Consensus 84 -l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~~~iliTTR~~~~-~~~~-~~~~~~~l~~l~~~ea~~L------ 151 (656)
..+++.++|+|+++... ..+.+...+.... ...++|+||....- .... .....+++++.+.++..++
T Consensus 101 ~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 12477899999998654 2333333332222 44667777665431 1100 1124688999998874333
Q ss_pred -HHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 152 -FEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
+.+.+.......++ .+....+++.++|.+..
T Consensus 180 ~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 180 RLTEICKHEGIAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHH
Confidence 22223222212211 25577888888887654
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=1.6e-05 Score=80.68 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=89.2
Q ss_pred CCCCCcceEeccccCCc---------ccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCccc-Ccc
Q 037310 362 SSSPHLQTLFLGSNDLN---------EVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRL-PME 431 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~l-p~~ 431 (656)
..+++|+.|.+...... .-....+..+++|+.|++++|.. ..++. + .+++|++|++..|.+..- ...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34556666666443211 11224467788899999988722 23443 4 378899998887766421 122
Q ss_pred c--cCCCCCCeEecCCc--c------ccccChhhh--cCCCCCcEEEeeecCCCCcCCCcccccCccccHHHh---hcCC
Q 037310 432 L--KYLVHLKRLNLEFT--R------LTRIPQEVI--SNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEI---LSLQ 496 (656)
Q Consensus 432 ~--~~l~~L~~L~l~~~--~------~~~l~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~l~ 496 (656)
+ ..+++|++|+|+.+ . +..+... + ..+++|++|++.+|.. .......+ +.++
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i------------~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEE------------QNVVVEMFLESDILP 279 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTT------------HHHHHHHHHHCSSGG
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCC------------chHHHHHHHhCccCC
Confidence 3 36888888887532 1 2222221 2 2478899999988873 22222223 3577
Q ss_pred CCcEEEEEecchhh--hHhhhcCcccccccCCceeecccc
Q 037310 497 HLNVLTVTLESFCA--LRMLLDSPRLQSLSTPSLCLKHCC 534 (656)
Q Consensus 497 ~L~~L~l~~~~~~~--~~~l~~~~~~~~~ll~~L~l~~~~ 534 (656)
+|+.|+++.+.... ...+.........+ +.|+++.|.
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L-~~L~L~~n~ 318 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHL-KFINMKYNY 318 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTC-SEEECCSBB
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcc-eEEECCCCc
Confidence 88888887665422 22333332333446 788887764
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=9.9e-06 Score=72.21 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=39.0
Q ss_pred cccEEEccCCCCCccCccccCCcccCcEEeCCCCC-Cccc-CccccCC----CCCCeEecCCc-cccccChhhhcCCCCC
Q 037310 390 SLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSK-IRRL-PMELKYL----VHLKRLNLEFT-RLTRIPQEVISNLKML 462 (656)
Q Consensus 390 ~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~-~~~l-p~~~~~l----~~L~~L~l~~~-~~~~l~~~~l~~l~~L 462 (656)
.|+.||+++|.+...--..+..+++|+.|+|++|. ++.- -..+..+ ++|++|++++| ++++-.-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777765433333345555556666655552 3311 1112222 24555555555 3443222224445555
Q ss_pred cEEEeeecC
Q 037310 463 RVLRMYECG 471 (656)
Q Consensus 463 ~~L~l~~~~ 471 (656)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=6.9e-05 Score=74.28 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+.|.|+|++|+|||++|+.+++.. .. ..+.++. .++.... .+. ... .....+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~~------~~l~~~~---~g~-----~~~---~~~~~f~~a~ 105 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIKG------PELLTMW---FGE-----SEA---NVREIFDKAR 105 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEECH------HHHHHHH---HTT-----CTT---HHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEEh------HHHHhhh---cCc-----hHH---HHHHHHHHHH
Confidence 4578999999999999999999976 21 1222221 1222211 111 111 1222233333
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCC-CCCCcEEEEEceehhhhcc--cC---CcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ--ME---AHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~--~~---~~~~~~l~~ 142 (656)
...+.++++|+++.... ..++...+... ...+..||.||........ .. -...+.++.
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 45679999999974211 12222222211 1134455556655432211 11 124678899
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.+.++-.+++...+.........+ ...+++.+.|+|-+
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred cCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 999999999988776543222222 35667778887643
No 189
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00017 Score=73.05 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.++||+|+|||.||+++++.. ... .+.+..+.-. ..............+...-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~-----------------sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELV-----------------QKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGS-----------------CSSTTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhh-----------------ccccchHHHHHHHHHHHHH
Confidence 4557899999999999999999987 222 2333332110 0001111111122222222
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCCC-CCCcEEEEEceehhhhcc----c-CCcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSAT-RASNKVVFTTLEFEIGGQ----M-EAHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~-~~~~~iliTTR~~~~~~~----~-~~~~~~~l~~ 142 (656)
...+++|+||++|.... +.++...+.... ..+..||-||......+. . .-...+.++.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC
Confidence 45789999999975310 111222222211 133344555555443221 1 1235688888
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
-+.++-.++|..+..+.......+ ...|++.+.|+-
T Consensus 319 Pd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 319 PSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 888889999988776544222223 567888888864
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.91 E-value=0.00011 Score=74.61 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.|+|++|+|||++|+.+++.. .. ..+.++.+ ++ .... ...........+...-.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~------~l----~~~~-------~g~~~~~~~~~f~~a~~ 141 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS------DL----VSKW-------MGESEKLVKQLFAMARE 141 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH------HH----HSCC----------CHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH------HH----hhhh-------cchHHHHHHHHHHHHHH
Confidence 458899999999999999999986 21 12233221 11 1100 01111112222222224
Q ss_pred CccEEEEEeCCcCchh-------------hhhhccccCCC--CCCCcEEEEEceehh-----hhcccCCcceEeeccCCh
Q 037310 86 RKKFVLLLDDIWEPVD-------------LAQVGLLVPSA--TRASNKVVFTTLEFE-----IGGQMEAHKSFEVECLGY 145 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~--~~~~~~iliTTR~~~-----~~~~~~~~~~~~l~~l~~ 145 (656)
.++.+|+||+++.... ..++...+... ...+..||.||.... +.++ -...+.++..+.
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~ 219 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDL 219 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT--CCEEEECCCCCH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc--cCEEEEeCCcCH
Confidence 5788999999975421 11222212111 113344454555432 1221 224577888899
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITVGR 190 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~ 190 (656)
++..+++...+....... .+.....|++.+.|. +-.|..+..
T Consensus 220 ~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999988876543111 134578899999885 444555443
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.88 E-value=0.00015 Score=74.73 Aligned_cols=158 Identities=11% Similarity=-0.018 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||++|+.+++.. . . ..+.++++.-... . ...........+...-
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~---~--~-~~~~v~~~~l~~~------~-----------~g~~~~~~~~~~~~a~ 204 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES---N--A-TFFNISAASLTSK------Y-----------VGEGEKLVRALFAVAR 204 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT---T--C-EEEEECSCCC------------------------CHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---c--C-cEEEeeHHHhhcc------c-----------cchHHHHHHHHHHHHH
Confidence 4678999999999999999999875 1 1 2334433221110 0 0001111112222222
Q ss_pred CCccEEEEEeCCcCchh-------------hhhhccccC---CCCCCCcEEEEEceehhh-----hcccCCcceEeeccC
Q 037310 85 KRKKFVLLLDDIWEPVD-------------LAQVGLLVP---SATRASNKVVFTTLEFEI-----GGQMEAHKSFEVECL 143 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~-------------~~~~~~~l~---~~~~~~~~iliTTR~~~~-----~~~~~~~~~~~l~~l 143 (656)
...+.+|+||+++.... ...+...+. ........||.||..... .++ -...+.++..
T Consensus 205 ~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R--~~~~i~i~~p 282 (389)
T 3vfd_A 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRR--FIKRVYVSLP 282 (389)
T ss_dssp HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTT--CCEEEECCCC
T ss_pred hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcC--cceEEEcCCc
Confidence 34567999999975410 111111111 111022334445544221 121 1235778889
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHH
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL-ALITVGR 190 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 190 (656)
+.++..+++...+....... .++....|++.+.|+.- ++..+..
T Consensus 283 ~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999988876543121 23457788999888654 5544433
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=4e-05 Score=77.56 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=83.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCc-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh--
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFD-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV-- 83 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-- 83 (656)
.+.++|++|+||||+|+.++... .. ..+. .+..++.+.......+.. . ...+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l-~~-~~~~~~~~~~~~~~~~~~~~ir~-~-------------------i~~~~~~~~ 105 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI-YG-KNYSNMVLELNASDDRGIDVVRN-Q-------------------IKDFASTRQ 105 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH-HT-TSHHHHEEEECTTSCCSHHHHHT-H-------------------HHHHHHBCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-cC-CCccceEEEEcCcccccHHHHHH-H-------------------HHHHHhhcc
Confidence 38999999999999999999875 11 1111 122333322111111111 1 1111110
Q ss_pred -hCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEceehh-hhcc-cCCcceEeeccCChhhhHHHHHHHhcC
Q 037310 84 -MKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLEFE-IGGQ-MEAHKSFEVECLGYDDSWKLFEVKVGR 158 (656)
Q Consensus 84 -l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~~~-~~~~-~~~~~~~~l~~l~~~ea~~L~~~~~~~ 158 (656)
+.+.+-++|+|+++... ..+.+...+.... ..++++++|.... +... ......+++.+++.++..+.+.+.+..
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHH
Confidence 12347889999997542 2333333332222 4455666654432 1111 112236789999999999988877744
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCchH
Q 037310 159 DTLDSHPDIPELAKTVVKECGGLPLA 184 (656)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~g~Pla 184 (656)
.....+ ++....+++.++|.+.-
T Consensus 185 ~~~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 185 EKLKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp TTCCBC---HHHHHHHHHHHTTCHHH
T ss_pred cCCCCC---HHHHHHHHHHcCCCHHH
Confidence 331221 34577888889997753
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=1.2e-05 Score=81.79 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccC--CcccCcEEeCCCC--C------CcccCccc
Q 037310 363 SSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGIS--NLVSLQHLDPARS--K------IRRLPMEL 432 (656)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~--~L~~L~~L~l~~~--~------~~~lp~~~ 432 (656)
.+++|+.|.+.+|.-..+++ + .+++|+.|++..|.+.......+. .+++|++|+|+.+ . +..+.+.+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 34556666665552111221 1 255566666655533222222222 4556666655321 0 11111111
Q ss_pred --cCCCCCCeEecCCccccccChhhh---cCCCCCcEEEeeecCCCCcCCCcccccCc--cccHHHhhcCCCCcEEEEEe
Q 037310 433 --KYLVHLKRLNLEFTRLTRIPQEVI---SNLKMLRVLRMYECGSDKQEGDSILIGGR--EVLVVEILSLQHLNVLTVTL 505 (656)
Q Consensus 433 --~~l~~L~~L~l~~~~~~~l~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~ 505 (656)
..+++|++|++++|.+.......+ ..+++|++|+++.|.. ... ......+.++++|+.|+++.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L----------~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL----------TDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC----------BHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC----------ChHHHHHHHhhcccCCcceEEECCC
Confidence 235666666666664432111112 2355666666665552 111 01223345566666666665
Q ss_pred cc
Q 037310 506 ES 507 (656)
Q Consensus 506 ~~ 507 (656)
+.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 54
No 194
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0002 Score=73.75 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.++||+|+|||.+|+++++.. ... .+.++.+.-. ..............+...-
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~-----------------sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIV-----------------DKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTC-----------------CSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhc-----------------cccchHHHHHHHHHHHHHH
Confidence 4668899999999999999999987 221 2233332110 0001111112222222223
Q ss_pred CCccEEEEEeCCcCch------------h----hhhhccccCCC-CCCCcEEEEEceehhhhccc--C---CcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPV------------D----LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQM--E---AHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~~--~---~~~~~~l~~ 142 (656)
...+++|++|++|... . +..+...+... ...+..||.||......+.. . -...+.++.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l 351 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCC
Confidence 4678999999997431 0 11122222211 11344566666655443221 1 123577888
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
-+.++-.++|..+..+.......+ ...+++.+.|+-
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 888888888888776543222233 467888888864
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.79 E-value=0.00016 Score=75.69 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||+||+.+++.. . .. ..+.++.+. +.... .+. ......... ...-
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~---~-~~-~~~~v~~~~------l~~~~---~g~-----~~~~~~~~f---~~a~ 224 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA---N-NS-TFFSISSSD------LVSKW---LGE-----SEKLVKNLF---QLAR 224 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC---C-SS-EEEEECCC-----------------------CCCTHHHHH---HHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---C-CC-CEEEEeHHH------HHhhh---cch-----HHHHHHHHH---HHHH
Confidence 4678999999999999999999975 1 11 122333321 11111 010 111222222 2222
Q ss_pred CCccEEEEEeCCcCch-------------hhhhhccccCCC--CCCCcEEEEEceehhhhcc--c-CCcceEeeccCChh
Q 037310 85 KRKKFVLLLDDIWEPV-------------DLAQVGLLVPSA--TRASNKVVFTTLEFEIGGQ--M-EAHKSFEVECLGYD 146 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~~--~~~~~~iliTTR~~~~~~~--~-~~~~~~~l~~l~~~ 146 (656)
...+.+|+||+++... ....+...+... ...+..||.||........ . .-...+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 3567899999997541 011222222221 1134455556654322110 0 11245778888888
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 037310 147 DSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITVGR 190 (656)
Q Consensus 147 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~ 190 (656)
+..++|..++....... .+.....|++.+.|+ +-.|..+..
T Consensus 305 ~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88899988876543111 134567899999885 445544443
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=1.3e-05 Score=72.85 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-+.++|+|++|+||||||+.+++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00028 Score=72.51 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.++|++|+|||.||++++++. ... .+.+..+.-. . .............+...-
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~--------------s---k~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELV--------------Q---KYVGEGARMVRELFEMAR 299 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC--------------C---CSSSHHHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhh--------------c---ccCCHHHHHHHHHHHHHH
Confidence 5668899999999999999999987 222 2333332110 0 001111112222222233
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCC-CCCCcEEEEEceehhhhcc----cC-CcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ----ME-AHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~----~~-~~~~~~l~~ 142 (656)
...+++|++|+++.... ...+...+... ...+..||-||......+. .+ -...+.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 46789999999974310 01111112221 2133344556655443221 11 234678888
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
-+.++-.++|..++.........+ ...|++.+.|+-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 888888999988876544222223 467888888864
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.0001 Score=72.76 Aligned_cols=130 Identities=10% Similarity=-0.004 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCC-CCCceEEEEEeCC-hhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTP-NDFDLVIWVVVSK-DLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
.+.+.++|++|+||||+|+.+++....-. .+.| +.++..+. ...+.++ +.+.+.+...+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p----------------- 78 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP----------------- 78 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC-----------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc-----------------
Confidence 67899999999999999999987531111 2333 34554432 2333332 22333332211
Q ss_pred hhCCccEEEEEeCCcCch--hhhhhccccCCCCCCCcEEEEEcee-hhhhcccCCcceEeeccCChhhhHHHHHHHh
Q 037310 83 VMKRKKFVLLLDDIWEPV--DLAQVGLLVPSATRASNKVVFTTLE-FEIGGQMEAHKSFEVECLGYDDSWKLFEVKV 156 (656)
Q Consensus 83 ~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTTR~-~~~~~~~~~~~~~~l~~l~~~ea~~L~~~~~ 156 (656)
..+++-++|+|+++... ..+.+...+.... +.+.+|++|.+ ..+....... .++++++++++..+.+.+..
T Consensus 79 -~~~~~kvviIdead~lt~~a~naLLk~LEep~-~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 79 -ELYTRKYVIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred -ccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-CCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 12467889999998653 3444544444333 45565555543 3343333334 89999999999999998876
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.77 E-value=0.00049 Score=66.38 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+||||+|+.+++.. ... .+.++.+.-.. . ............+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~----------~-------~~~~~~~~~~~~~~~a~ 101 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE----------M-------FVGVGASRVRDMFEQAK 101 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT----------S-------CCCCCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH----------H-------hhhhhHHHHHHHHHHHH
Confidence 3458899999999999999999876 222 23343322110 0 00111222223333333
Q ss_pred CCccEEEEEeCCcCchh----------------hhhhccccCCC-CCCCcEEEEEceehhhh-ccc-C---CcceEeecc
Q 037310 85 KRKKFVLLLDDIWEPVD----------------LAQVGLLVPSA-TRASNKVVFTTLEFEIG-GQM-E---AHKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~~~~~~iliTTR~~~~~-~~~-~---~~~~~~l~~ 142 (656)
...+.++++|+++.... ...+...+... ...+..||.||...... ... . -...+.++.
T Consensus 102 ~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~ 181 (257)
T 1lv7_A 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181 (257)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCC
T ss_pred HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCC
Confidence 45678999999953210 11111111111 11334455566554321 111 1 123567777
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCC-CchHHHH
Q 037310 143 LGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGG-LPLALIT 187 (656)
Q Consensus 143 l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 187 (656)
.+.++-.+++.............. ...+++.+.| .+--|..
T Consensus 182 P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 182 PDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 788888888877765433121111 3557777777 5544443
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=4.9e-06 Score=80.09 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred hcCCcccEEEccCCCCCc--cCccccCCcccCcEEeCCCCCCcccCccccCCC--CCCeEecCCccccc-cC------hh
Q 037310 386 QFMASLRVLTLSDGSLPG--HLLTGISNLVSLQHLDPARSKIRRLPMELKYLV--HLKRLNLEFTRLTR-IP------QE 454 (656)
Q Consensus 386 ~~l~~L~~L~l~~~~~~~--~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~-l~------~~ 454 (656)
..+++|+.|+|++|.+.. .+|..++.+++|++|+|++|.+..+. .+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456667777777774443 23344556667777777776666552 233333 66666766665542 22 12
Q ss_pred hhcCCCCCcEEEe
Q 037310 455 VISNLKMLRVLRM 467 (656)
Q Consensus 455 ~l~~l~~L~~L~l 467 (656)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2455666666654
No 201
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=1.8e-05 Score=72.21 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=61.3
Q ss_pred CCCCCCcceEecccc-CCcccc----hhHHhcCCcccEEEccCCCCCcc----CccccCCcccCcEEeCCCCCCcc----
Q 037310 361 SSSSPHLQTLFLGSN-DLNEVN----RDFFQFMASLRVLTLSDGSLPGH----LLTGISNLVSLQHLDPARSKIRR---- 427 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~L~~L~~L~l~~~~~~~---- 427 (656)
+...+.|++|++++| .+.... ...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 356677777777777 665432 22244566777777777744322 23334444566777777766552
Q ss_pred -cCccccCCCCCCeEec--CCccccc-----cChhhhcCCCCCcEEEeeecC
Q 037310 428 -LPMELKYLVHLKRLNL--EFTRLTR-----IPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 428 -lp~~~~~l~~L~~L~l--~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~ 471 (656)
+...+...++|++|++ ++|.+.. +... +...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 3444555566666666 5555543 1111 3344556666666555
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00018 Score=74.03 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH-Hh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF-KV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~ 83 (656)
++=|.++||+|+|||.+|+++++.. ... .+.++.+.- .. .... ..+...+.+. ..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l--------------~~---~~vG-ese~~ir~lF~~A 270 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQL--------------VQ---MYIG-EGAKLVRDAFALA 270 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGG--------------CS---SCSS-HHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhh--------------hh---cccc-hHHHHHHHHHHHH
Confidence 5678899999999999999999987 222 223333211 00 0011 1111222222 22
Q ss_pred hCCccEEEEEeCCcCc-------hh---------hhhhccccCCCCC-CCcEEEEEceehhhhccc--C---CcceEeec
Q 037310 84 MKRKKFVLLLDDIWEP-------VD---------LAQVGLLVPSATR-ASNKVVFTTLEFEIGGQM--E---AHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~-------~~---------~~~~~~~l~~~~~-~~~~iliTTR~~~~~~~~--~---~~~~~~l~ 141 (656)
-...+++|++|+++.. .. ...+...+..... .+..||-||......+.. . -...+.++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~ 350 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP 350 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC
Confidence 2346899999999632 00 1112222222221 333445566665443221 1 12357788
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.-+.++..++|..+..+.......+ ...|++.+.|+-
T Consensus 351 lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 351 LPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 8888888888887765443222223 467888888864
No 203
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.70 E-value=7e-06 Score=71.88 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS 45 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 45 (656)
..++|+|+.|+|||||++.++... .. ..+ .++|++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHH
Confidence 478999999999999999999987 22 222 25666654
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00035 Score=71.04 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHH-HHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAED-IFKV 83 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~ 83 (656)
++=|.++|++|+|||.||+++++.. ... .+.++.+.- .. .... ..+...+. +...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l--------------~s---k~vG-esek~ir~lF~~A 271 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSEL--------------IQ---KYLG-DGPRLCRQIFKVA 271 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGG--------------CC---SSSS-HHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHh--------------hh---ccCc-hHHHHHHHHHHHH
Confidence 4568899999999999999999987 222 223332210 00 0011 11122222 2222
Q ss_pred hCCccEEEEEeCCcCch------------h----hhhhccccCC-CCCCCcEEEEEceehhhhccc--C---CcceEeec
Q 037310 84 MKRKKFVLLLDDIWEPV------------D----LAQVGLLVPS-ATRASNKVVFTTLEFEIGGQM--E---AHKSFEVE 141 (656)
Q Consensus 84 l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~~~~~~iliTTR~~~~~~~~--~---~~~~~~l~ 141 (656)
-...+++|+||++|... . +.++...+.. ....+..||-||......+.. . -...+.++
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~ 351 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE 351 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC
Confidence 24578999999997430 0 1111111111 111333455556554443221 1 12346788
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.-+.++..++|..+..+.......+ ...|++.+.|+-
T Consensus 352 lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 352 NPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 8888888889988876544232233 467888888764
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=3e-05 Score=70.78 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=85.1
Q ss_pred hhHHhcCCcccEEEccCC-CCCcc----CccccCCcccCcEEeCCCCCCcc-----cCccccCCCCCCeEecCCccccc-
Q 037310 382 RDFFQFMASLRVLTLSDG-SLPGH----LLTGISNLVSLQHLDPARSKIRR-----LPMELKYLVHLKRLNLEFTRLTR- 450 (656)
Q Consensus 382 ~~~~~~l~~L~~L~l~~~-~~~~~----~p~~~~~L~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~- 450 (656)
...+...++|+.|+|++| .+... +...+...++|++|+|++|.+.. +...+...++|++|++++|.+.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344677899999999998 65532 45566778899999999998863 45556777899999999998775
Q ss_pred ----cChhhhcCCCCCcEEEe--eecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 451 ----IPQEVISNLKMLRVLRM--YECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 451 ----l~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
+... +...++|++|++ ++|.+- ..........+...++|+.|+++++..
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~--------~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLG--------NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCC--------HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCC--------HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3333 667788999999 777730 001112345566678899999987765
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.65 E-value=0.00063 Score=71.79 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+-|.|+|++|+|||++|+.+++.. .. ..+.+++. .+...+ ...........+....
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----------~l~~~~-------~g~~~~~~~~~f~~A~ 294 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----------EIMSKL-------AGESESNLRKAFEEAE 294 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH----------HHHTSC-------TTHHHHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch----------Hhhhhh-------cchhHHHHHHHHHHHH
Confidence 4568999999999999999999875 21 22344431 111111 1111222233344444
Q ss_pred CCccEEEEEeCCcCch-------------hhhhhccccCCCCC-CCcEEEEEceehhh-hccc----CCcceEeeccCCh
Q 037310 85 KRKKFVLLLDDIWEPV-------------DLAQVGLLVPSATR-ASNKVVFTTLEFEI-GGQM----EAHKSFEVECLGY 145 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~~~~-~~~~iliTTR~~~~-~~~~----~~~~~~~l~~l~~ 145 (656)
.+++.+|+||+++... ...++...+..... .+..||.||..... .... .-...+.++..+.
T Consensus 295 ~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH
T ss_pred hcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH
Confidence 5678899999995321 11222222222111 33344445554422 1111 1123578899999
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL-PLALITV 188 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 188 (656)
++-.++|..++.......... ...+++.+.|+ +-.+..+
T Consensus 375 ~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 375 TGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 999999988876543222222 45677777775 4344433
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=5.2e-05 Score=70.30 Aligned_cols=36 Identities=39% Similarity=0.302 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
+.|.|+|++|+|||+||+.+++.. . .....+.|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEh
Confidence 688999999999999999999987 2 22234566654
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00016 Score=74.25 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++=|.++||+|+|||++|+++++.. ... .+.++.+.-. ..............+...-
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~-----------------~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFV-----------------HKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTC-----------------CSSCSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhh-----------------ccccchhHHHHHHHHHHHH
Confidence 4568899999999999999999987 222 2233332110 0001111112222222222
Q ss_pred CCccEEEEEeCCcCch------------h----hhhhccccCCC-CCCCcEEEEEceehhhhcc----cCC-cceEeecc
Q 037310 85 KRKKFVLLLDDIWEPV------------D----LAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ----MEA-HKSFEVEC 142 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~----~~~-~~~~~l~~ 142 (656)
...++++++|+++... . +.++...+... ...+..||.||......+. .+. ...+++++
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 4578999999996320 0 11122222211 1134445556655433211 111 23466766
Q ss_pred CCh-hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 143 LGY-DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 143 l~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
++. ++-.++|..+..+.......+ ...+++.+.|+-
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 654 445556666655433222223 467788888764
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.59 E-value=0.00066 Score=71.05 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.|+|++|+|||+||+.++... ... .+.++.+..... . ...........+.....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~~----------~-------~g~~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVEL----------F-------VGVGAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTTC----------C-------TTHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHHH----------H-------hcccHHHHHHHHHHHHh
Confidence 458899999999999999999976 222 233443221110 0 00111222233444445
Q ss_pred CccEEEEEeCCcCch----------------hhhhhccccCCC-CCCCcEEEEEceehhhhcc--cC---CcceEeeccC
Q 037310 86 RKKFVLLLDDIWEPV----------------DLAQVGLLVPSA-TRASNKVVFTTLEFEIGGQ--ME---AHKSFEVECL 143 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~-~~~~~~iliTTR~~~~~~~--~~---~~~~~~l~~l 143 (656)
+.+.+|+||+++... .+.++...+... ...+..||.||......+. .. -...+.++..
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 678999999996531 112222222111 1134455556655543221 11 1236778888
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
+.++-.+++..++.........+ ...+++.+.|..
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 88888888887775543222222 455888888876
No 210
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.52 E-value=0.00011 Score=65.51 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=71.3
Q ss_pred CccccCCcccCcEEeCCCCCCccc-CccccCCCCCCeEecCCc-cccccChhhhcCC----CCCcEEEeeecCCCCcCCC
Q 037310 405 LLTGISNLVSLQHLDPARSKIRRL-PMELKYLVHLKRLNLEFT-RLTRIPQEVISNL----KMLRVLRMYECGSDKQEGD 478 (656)
Q Consensus 405 ~p~~~~~L~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~-~~~~l~~~~l~~l----~~L~~L~l~~~~~~~~~~~ 478 (656)
+|.....-.+|+.||+++|.++.. -..+..+++|++|++++| .+++-.-..++.+ ++|++|++++|..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~------ 126 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN------ 126 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT------
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc------
Confidence 454333335799999999987632 244789999999999999 6776554446665 3799999999973
Q ss_pred cccccCccccHHHhhcCCCCcEEEEEecch
Q 037310 479 SILIGGREVLVVEILSLQHLNVLTVTLESF 508 (656)
Q Consensus 479 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 508 (656)
.+...+..+.++++|+.|+++.++.
T Consensus 127 -----ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 127 -----VTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp -----CCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred -----CCHHHHHHHhcCCCCCEEECCCCCC
Confidence 5777888899999999999998763
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.49 E-value=9.8e-05 Score=71.88 Aligned_cols=151 Identities=18% Similarity=0.120 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.|+|++|+|||++|+.+++.. . ..| +.+..+...+ ....... ...... +.....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~-~--~~~---~~v~~~~~~~----------~~~~~~~----~~~~~~---~~~a~~ 101 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA-H--VPF---FSMGGSSFIE----------MFVGLGA----SRVRDL---FETAKK 101 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH-T--CCC---CCCCSCTTTT----------SCSSSCS----SSSSTT---HHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh-C--CCE---EEechHHHHH----------hhcchHH----HHHHHH---HHHHHh
Confidence 347799999999999999999986 2 222 1111111000 0000000 011111 111222
Q ss_pred CccEEEEEeCCcCchh-----------------hhhhccccCCCC--CCCcEEEEEceehhhhc-c-c---CCcceEeec
Q 037310 86 RKKFVLLLDDIWEPVD-----------------LAQVGLLVPSAT--RASNKVVFTTLEFEIGG-Q-M---EAHKSFEVE 141 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~--~~~~~iliTTR~~~~~~-~-~---~~~~~~~l~ 141 (656)
.++.+|+||+++.... ...+...+.... .....||.||....... . . .-...+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 4567999999965311 122222222111 02234555665543211 1 1 112457888
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCch
Q 037310 142 CLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPL 183 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 183 (656)
..+.++..+++...+.......... ...+++.+.|.|-
T Consensus 182 ~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 182 KPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp CCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 9999999999988775433221122 2345666677653
No 212
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.47 E-value=0.0026 Score=63.83 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=34.8
Q ss_pred eEeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037310 137 SFEVECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLPLALI 186 (656)
Q Consensus 137 ~~~l~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 186 (656)
...+++.+.++-.+++.+.+...... -.++.+..|++.+.|.|..+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHH
Confidence 47899999999999998876543212 124558899999999996543
No 213
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.45 E-value=0.00069 Score=75.16 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=84.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
++-|.++|++|+|||+||+.++++. ..+ .+.++.+ .+. .. ............+....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~----------~l~---sk----~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----------EIM---SK----LAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH----------HHH---SS----CTTHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH----------Hhh---cc----cchHHHHHHHHHHHHHH
Confidence 5678999999999999999999986 222 2344331 111 10 11122222333344444
Q ss_pred CCccEEEEEeCCcCch--------h-----hhhhccccCCCC-CCCcEEEEEceehhhhcc-c----CCcceEeeccCCh
Q 037310 85 KRKKFVLLLDDIWEPV--------D-----LAQVGLLVPSAT-RASNKVVFTTLEFEIGGQ-M----EAHKSFEVECLGY 145 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~--------~-----~~~~~~~l~~~~-~~~~~iliTTR~~~~~~~-~----~~~~~~~l~~l~~ 145 (656)
...+.+|+||+++... + ..++...+.... ..+..||.||........ + .-...++++..+.
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 5678999999997531 0 111222221111 133345556655443221 1 1134578888888
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
++-.++|..+..+.......+ ...|++.+.|+-
T Consensus 375 ~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 888888887765443222223 567888888874
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=0.00018 Score=62.56 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-|.|+|++|+|||++|+.+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999875
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.42 E-value=0.00015 Score=65.89 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+.|+|++|+|||++|+.+++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999876
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.40 E-value=0.0011 Score=65.05 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++.+.|+|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999987
No 217
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.39 E-value=0.0042 Score=59.57 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=75.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh-CC
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM-KR 86 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~ 86 (656)
+.|+|++|+||||||+.++... . ...+.+... + +.... ..........+.+.. ..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~------~----~~~~~--------~~~~~~~i~~~~~~~~~~ 107 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------D----FVEMF--------VGVGAARVRDLFETAKRH 107 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------H----HHHSC--------TTHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHH------H----HHHHH--------hhHHHHHHHHHHHHHHhc
Confidence 8999999999999999999876 2 122333321 1 11100 001111122222222 34
Q ss_pred ccEEEEEeCCcCch------------h----hhhhccccCCCCCCCcEEEE-Eceehhhhccc-----CCcceEeeccCC
Q 037310 87 KKFVLLLDDIWEPV------------D----LAQVGLLVPSATRASNKVVF-TTLEFEIGGQM-----EAHKSFEVECLG 144 (656)
Q Consensus 87 ~~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~~-----~~~~~~~l~~l~ 144 (656)
...++++|+++... . ..++...+.........+++ +|..+...... .-...+.++..+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 187 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcC
Confidence 56899999995321 0 11222222222212233444 44444432211 123457788888
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 145 YDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 145 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
.++-.+++.............+ ...+++.+.|.-
T Consensus 188 ~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 188 VKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 8888888877664332121222 456777777754
No 218
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.38 E-value=0.0046 Score=60.20 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=75.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhCCc
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMKRK 87 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 87 (656)
|.|+|++|+||||||+.++... . ...+.+... . +..... ..........+...-...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~------~----~~~~~~-------~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------D----FVEMFV-------GVGAARVRDLFETAKRHA 132 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------H----HHHSTT-------THHHHHHHHHHHHHHTSC
T ss_pred EEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH------H----HHHHHh-------hHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999976 2 223333321 1 111000 000111111222222345
Q ss_pred cEEEEEeCCcCch----------------hhhhhccccCCCCCCCcEEEE-Eceehhhhcc-----cCCcceEeeccCCh
Q 037310 88 KFVLLLDDIWEPV----------------DLAQVGLLVPSATRASNKVVF-TTLEFEIGGQ-----MEAHKSFEVECLGY 145 (656)
Q Consensus 88 ~~LlVlDdv~~~~----------------~~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~-----~~~~~~~~l~~l~~ 145 (656)
+.++++|+++... ...++...+.........+++ +|..+..... ..-...+.++..+.
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 212 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCH
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCH
Confidence 6899999995320 011222222222212223443 4444443221 11234678888888
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
++-.+++...+.......... ...+++.+.|..
T Consensus 213 ~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 213 KGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 888888887764432121222 456777777765
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00024 Score=68.24 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=61.5
Q ss_pred CCCCCcceEeccccCCcccch--hHHhcCCcccEEEccCCCCCccCccccCCcc--cCcEEeCCCCCCcc-cC-------
Q 037310 362 SSSPHLQTLFLGSNDLNEVNR--DFFQFMASLRVLTLSDGSLPGHLLTGISNLV--SLQHLDPARSKIRR-LP------- 429 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~--~L~~L~l~~~~~~~-lp------- 429 (656)
.++++|++|++++|.++++.+ ..+..+++|+.|+|++|.+... ..+..+. +|+.|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467899999999999988653 5577899999999999965543 2344444 99999999998873 44
Q ss_pred ccccCCCCCCeEe
Q 037310 430 MELKYLVHLKRLN 442 (656)
Q Consensus 430 ~~~~~l~~L~~L~ 442 (656)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2367889999986
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=0.00076 Score=67.01 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+-+.|+|++|+|||++|+.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999976
No 221
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.23 E-value=0.00016 Score=74.85 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=44.3
Q ss_pred CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCccccCCCCCCe
Q 037310 361 SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPMELKYLVHLKR 440 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 440 (656)
+.++.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ....-...+.+...|+.+.+..+. ..+........+|+.
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCE
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCce
Confidence 344455555555433 23344444555555555555444 222222334444444444433321 112222223344454
Q ss_pred EecCCccccccChhhhcCCCCCcEEEeeec
Q 037310 441 LNLEFTRLTRIPQEVISNLKMLRVLRMYEC 470 (656)
Q Consensus 441 L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~ 470 (656)
+.+... +..+....+..+.+|+.+.+..+
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred EEECCC-ceecccccccccccceeEEcCCC
Confidence 444332 33333333445555555555433
No 222
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.18 E-value=0.0031 Score=61.20 Aligned_cols=127 Identities=16% Similarity=0.083 Sum_probs=67.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh-CC
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM-KR 86 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~ 86 (656)
+.|+|++|+||||||+.++... .. ..+++....-.+. ...........+.+.. ..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~------------------~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM------------------YVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS------------------TTHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh------------------hhhHHHHHHHHHHHHHHhc
Confidence 8999999999999999999976 11 2444443221100 0001111112222221 34
Q ss_pred ccEEEEEeCCcCchh-------------hhhhccccCCCCC-CCcEEEEEceehhhhccc-----CCcceEeeccCChhh
Q 037310 87 KKFVLLLDDIWEPVD-------------LAQVGLLVPSATR-ASNKVVFTTLEFEIGGQM-----EAHKSFEVECLGYDD 147 (656)
Q Consensus 87 ~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~-~~~~iliTTR~~~~~~~~-----~~~~~~~l~~l~~~e 147 (656)
.+.++++|+++.... ..++...+..... ....++.+|..+.+.+.. .-...+.++..+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 578999999964210 1111112222211 233344556555543221 123457788888888
Q ss_pred hHHHHHHHhcC
Q 037310 148 SWKLFEVKVGR 158 (656)
Q Consensus 148 a~~L~~~~~~~ 158 (656)
-.++|......
T Consensus 183 r~~il~~~~~~ 193 (274)
T 2x8a_A 183 RLAILKTITKN 193 (274)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhc
Confidence 88888877643
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.15 E-value=0.0016 Score=64.78 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
..+.|+|++|+|||++|+.+++.. ...-...+.++++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~---~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL---FDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH---HSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH---cCCCcceEEeeccc
Confidence 579999999999999999999876 11122345566543
No 224
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.12 E-value=0.0035 Score=65.93 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=77.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC-
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK- 85 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~- 85 (656)
=|.|+|++|+|||+||+.++... . ...+.++.+.-... . .......+...++
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~---~---~~~i~i~g~~~~~~------------------~---~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVEM------------------F---VGVGAARVRDLFET 118 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---T---CCEEEEEGGGGTSS------------------C---TTHHHHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C---CCEEEEehhHHHHh------------------h---hhhHHHHHHHHHHH
Confidence 38999999999999999999976 2 12344443321100 0 0011122222222
Q ss_pred ---CccEEEEEeCCcCch----------------hhhhhccccCCCCC-CCcEEEEEceehhhhcc-c----CCcceEee
Q 037310 86 ---RKKFVLLLDDIWEPV----------------DLAQVGLLVPSATR-ASNKVVFTTLEFEIGGQ-M----EAHKSFEV 140 (656)
Q Consensus 86 ---~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~~~-~~~~iliTTR~~~~~~~-~----~~~~~~~l 140 (656)
..+.++++|+++... .+.++...+..... ....++-+|..+...+. . .-...+.+
T Consensus 119 a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i 198 (499)
T 2dhr_A 119 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198 (499)
T ss_dssp SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEEC
T ss_pred HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEec
Confidence 245799999996431 01222222222221 23344445555544221 1 11236788
Q ss_pred ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 141 ECLGYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 141 ~~l~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
+..+.++-.+++..++.........+ ...+++.+.|+.
T Consensus 199 ~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 199 DAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred CCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 88888888888877664332111111 456778888875
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.11 E-value=0.00084 Score=65.04 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
..|.|+|++|+|||++|+.+++.. . +.. ...+.++++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~-~-~~~-~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS-S-RWQ-GPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS-T-TTT-SCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc-C-ccC-CCeEEEecCC
Confidence 457799999999999999999875 1 111 2344566554
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.00027 Score=61.27 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-|.|+|++|+|||++|+.+++..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 47789999999999999999875
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.10 E-value=0.0013 Score=69.06 Aligned_cols=89 Identities=9% Similarity=0.050 Sum_probs=51.8
Q ss_pred EEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEc----------e----eh----hhhcccCCcceEeeccCChhhh
Q 037310 89 FVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTT----------L----EF----EIGGQMEAHKSFEVECLGYDDS 148 (656)
Q Consensus 89 ~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTT----------R----~~----~~~~~~~~~~~~~l~~l~~~ea 148 (656)
-++++|+++.. ...+.+...+.... .. .+|+.| . .. .+..++ ..+.+++++.++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~ 371 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-AP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEM 371 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-CC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-CC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHH
Confidence 38999999755 33444544444433 33 333333 2 10 122222 3479999999999
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHc-CCCchHH
Q 037310 149 WKLFEVKVGRDTLDSHPDIPELAKTVVKEC-GGLPLAL 185 (656)
Q Consensus 149 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal 185 (656)
.+++.+.+....... .++....|++.+ +|.|...
T Consensus 372 ~~iL~~~~~~~~~~~---~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 372 KQIIKIRAQTEGINI---SEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHHHHHTCCB---CHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhCCCC---CHHHHHHHHHHccCCCHHHH
Confidence 999988764322111 134467778877 7777643
No 228
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.0006 Score=66.63 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe--CChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV--SKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKV 83 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 83 (656)
+++.|+|++|+|||+||.+++... . ..+.|++. ... +.. ...+.++..+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIARA 179 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHHH
Confidence 467899999999999999998752 1 12445555 221 000 013445555555565
Q ss_pred hCCccEEEEEeCCcC
Q 037310 84 MKRKKFVLLLDDIWE 98 (656)
Q Consensus 84 l~~~~~LlVlDdv~~ 98 (656)
+...+ ++|+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 55555 999999953
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.02 E-value=0.0018 Score=64.05 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|.|+|++|+|||++|+.+++..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 457799999999999999999865
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.0024 Score=68.50 Aligned_cols=25 Identities=44% Similarity=0.490 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+.|+|++|+||||||+.++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999876
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.002 Score=61.24 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC----CCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN----DFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~ 47 (656)
.+++|.|++|+||||||..++... .... .-..++|+.....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCC
Confidence 489999999999999999998853 1111 1357889987664
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.97 E-value=0.0023 Score=59.83 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCC---------CCCC-CcccHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLF---------SRSW-NSKSLLE 75 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------~~~~-~~~~~~~ 75 (656)
.+++|.|++|+||||||..++. . . -..++|++.....+...+.. +....+.. .... ......+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 4899999999999999999988 3 1 23678888765333333322 22222110 0011 1112233
Q ss_pred HHHHHHHhhCCccEEEEEeCCcC
Q 037310 76 KAEDIFKVMKRKKFVLLLDDIWE 98 (656)
Q Consensus 76 ~~~~l~~~l~~~~~LlVlDdv~~ 98 (656)
....++.....+.-++|+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44445555544577999999853
No 233
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.95 E-value=0.00058 Score=61.67 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh---hhHHHHHHHHHHHhCC--CCCCCCcc-------cH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD---LQLKRIQDCIARKIGL--FSRSWNSK-------SL 73 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--~~~~~~~~-------~~ 73 (656)
..|.|++..|.||||.|...+-+. ..+--.+.++.+... .....+...+.-.+.. .+-.+... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 456777777799999999998876 223234556654332 2222333332100000 01111111 12
Q ss_pred HHHHHHHHHhhCCccE-EEEEeCCcC-----chhhhhhccccCCCCCCCcEEEEEceehh
Q 037310 74 LEKAEDIFKVMKRKKF-VLLLDDIWE-----PVDLAQVGLLVPSATRASNKVVFTTLEFE 127 (656)
Q Consensus 74 ~~~~~~l~~~l~~~~~-LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~iliTTR~~~ 127 (656)
........+.+...+| |||||++-- .-+.+.+...+.... ....||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP-GHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-TTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-CCCEEEEECCCCc
Confidence 2233445555555444 999999832 233344444444443 6778999999964
No 234
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.87 E-value=0.0029 Score=66.60 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCC--CCCC-c-eEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDT--PNDF-D-LVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
.-+.|+|++|+|||++|+.+++..... .... + .++.++++ ...... ......... .
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------------~~~~g~-~e~~~~~~~---~ 261 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------------TKYRGE-FEDRLKKVM---D 261 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHH---H
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------------ccccch-HHHHHHHHH---H
Confidence 356799999999999999999875111 1111 1 12233332 000000 011122222 2
Q ss_pred HhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhc---c----cCCcceEeeccCChhhhHHHHHH
Q 037310 82 KVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG---Q----MEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~---~----~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
..-..++.+|++|.- ......+...+.. ...++|.+|....... . ......+.++..+.++..+++..
T Consensus 262 ~~~~~~~~iLfiD~~--~~a~~~L~~~L~~---g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~ 336 (468)
T 3pxg_A 262 EIRQAGNIILFIDAA--IDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (468)
T ss_dssp HHHTCCCCEEEECC----------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HHHhcCCeEEEEeCc--hhHHHHHHHhhcC---CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHH
Confidence 222356788999921 1222223332221 3455666655543111 0 11223688999999999999987
Q ss_pred HhcC
Q 037310 155 KVGR 158 (656)
Q Consensus 155 ~~~~ 158 (656)
....
T Consensus 337 ~~~~ 340 (468)
T 3pxg_A 337 LRDR 340 (468)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 6644
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.84 E-value=0.0018 Score=64.84 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
.++.|.|++|+||||||.+++... .. .-..++|++.....+.. .++.++..... ......++....+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 589999999999999999999876 21 12347788876655543 44445443221 122345555555554
Q ss_pred hhC-CccEEEEEeCCcC
Q 037310 83 VMK-RKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~~ 98 (656)
... .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 442 4556899999843
No 236
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0026 Score=61.91 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=54.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHH-HHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEK-AEDIFK 82 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~-~~~l~~ 82 (656)
++-|.|++|+||||||.+++... .....-..++|++.....+.. .++.++..... ..+.+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 68999999999999999988776 211112467899887766543 25666553321 112344454 333333
Q ss_pred h--h-CCccEEEEEeCCc
Q 037310 83 V--M-KRKKFVLLLDDIW 97 (656)
Q Consensus 83 ~--l-~~~~~LlVlDdv~ 97 (656)
. + .++.-++|+|.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHTCCTTCCEEEEEECST
T ss_pred HHHhhccCceEEEEeccc
Confidence 2 2 4578899999994
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.82 E-value=0.0025 Score=72.72 Aligned_cols=132 Identities=13% Similarity=0.171 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccC--CCCC--CceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFD--TPND--FDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~--~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
+-+.|+|++|+|||++|+.+++.... +... -..+++++++.-.. + .......+.....+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g----~~~~g~~~~~l~~~~ 255 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------G----AKYRGEFEERLKAVI 255 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------------------CHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------c----CccchHHHHHHHHHH
Confidence 45789999999999999999987511 1111 11344444422100 0 000112233333333
Q ss_pred Hhh-C-CccEEEEEeCCcCchh-------hh---hhccccCCCCCCCcEEEEEceehhh-----hc-ccCCcceEeeccC
Q 037310 82 KVM-K-RKKFVLLLDDIWEPVD-------LA---QVGLLVPSATRASNKVVFTTLEFEI-----GG-QMEAHKSFEVECL 143 (656)
Q Consensus 82 ~~l-~-~~~~LlVlDdv~~~~~-------~~---~~~~~l~~~~~~~~~iliTTR~~~~-----~~-~~~~~~~~~l~~l 143 (656)
..+ . +++.+|++|+++.... ++ .+...+.. ....+|.+|..... .. .......+.+++.
T Consensus 256 ~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~---~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p 332 (854)
T 1qvr_A 256 QEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR---GELRLIGATTLDEYREIEKDPALERRFQPVYVDEP 332 (854)
T ss_dssp HHHHTTCSSEEEEECCC-------------------HHHHHT---TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCC
T ss_pred HHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC---CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCC
Confidence 322 2 4689999999975421 11 12222221 23345554443321 11 1122345889999
Q ss_pred ChhhhHHHHHHHh
Q 037310 144 GYDDSWKLFEVKV 156 (656)
Q Consensus 144 ~~~ea~~L~~~~~ 156 (656)
+.++..+++....
T Consensus 333 ~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 333 TVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhh
Confidence 9999999987543
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.0066 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.76 E-value=0.0058 Score=61.43 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC----CCceEEEEEeCChhhHHHHHHHHHHHhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN----DFDLVIWVVVSKDLQLKRIQDCIARKIG 62 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (656)
.++.|+|++|+||||||..++... .... .-..++|++.....+..++. .++..++
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 588999999999999999998864 2211 22468899987765544443 3344443
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.74 E-value=0.00051 Score=64.03 Aligned_cols=114 Identities=15% Similarity=-0.034 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
-.++.|+|+.|+||||+|..+++++ ..+-..+..+....... ....+++.++............+..+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL---EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4688999999999999999999887 22222344443322111 11233444433221111123344444555544
Q ss_pred CCc-cEEEEEeCCcCc--hhhhhhccccCCCCCCCcEEEEEceehhh
Q 037310 85 KRK-KFVLLLDDIWEP--VDLAQVGLLVPSATRASNKVVFTTLEFEI 128 (656)
Q Consensus 85 ~~~-~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTTR~~~~ 128 (656)
.+. .-++|+|.+... ...+.+.. +.+ .+..||+|-+...+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~---~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE---NGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH---TTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh---CCCeEEEEeccccc
Confidence 444 449999999532 22222222 111 35678888886544
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.74 E-value=0.0016 Score=61.56 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.+++|.|++|+|||||++.++... . ..-..+.|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~-~--~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG-L--RDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-H--HHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-H--HCCCeEEEEEccc
Confidence 489999999999999999998665 1 1112467776544
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.69 E-value=0.0045 Score=61.75 Aligned_cols=89 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC----CCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC-------CCcccHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN----DFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS-------WNSKSLL 74 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 74 (656)
.++.|+|++|+||||||.+++... .... .-..++|++.....+..++. .+++.++..... ....+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 489999999999999999998764 2211 02468899987765444443 334444332110 0011122
Q ss_pred ---HHHHHHHHhhC--CccEEEEEeCC
Q 037310 75 ---EKAEDIFKVMK--RKKFVLLLDDI 96 (656)
Q Consensus 75 ---~~~~~l~~~l~--~~~~LlVlDdv 96 (656)
+....+...+. .+.-++|+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23334444442 45678889988
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.69 E-value=0.0084 Score=67.51 Aligned_cols=133 Identities=14% Similarity=0.213 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCC--CC-CCceEEE-EEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDT--PN-DFDLVIW-VVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDI 80 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~--~~-~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 80 (656)
..-+.|+|++|+|||++|+.+++..... .. ..+..+| ++++.- .. + .......++..+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~--~-~~~~g~~e~~l~~~ 270 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LA--G-TKYRGDFEKRFKAL 270 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------C--C-CCCSSCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hc--c-ccccchHHHHHHHH
Confidence 3457899999999999999998875110 00 1122222 222110 00 0 01122344444444
Q ss_pred HHhh-CCccEEEEEeCCcCch--------hhh---hhccccCCCCCCCcEEEEEceehhhhccc-------CCcceEeec
Q 037310 81 FKVM-KRKKFVLLLDDIWEPV--------DLA---QVGLLVPSATRASNKVVFTTLEFEIGGQM-------EAHKSFEVE 141 (656)
Q Consensus 81 ~~~l-~~~~~LlVlDdv~~~~--------~~~---~~~~~l~~~~~~~~~iliTTR~~~~~~~~-------~~~~~~~l~ 141 (656)
.+.+ ..++.+|++|+++... ..+ .+...+.. ....+|.+|......... .....+.++
T Consensus 271 ~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~---~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~ 347 (758)
T 1r6b_X 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347 (758)
T ss_dssp HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS---CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECC
T ss_pred HHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC---CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcC
Confidence 4444 3457899999997541 111 12222221 345566666544321111 112357899
Q ss_pred cCChhhhHHHHHHHh
Q 037310 142 CLGYDDSWKLFEVKV 156 (656)
Q Consensus 142 ~l~~~ea~~L~~~~~ 156 (656)
..+.++..+++....
T Consensus 348 ~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 348 EPSIEETVQIINGLK 362 (758)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887654
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0013 Score=74.13 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 689999999999999999998762 1122345666543
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.65 E-value=0.0036 Score=63.17 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
.++.|.|++|+||||||.+++... ... -..++|++.....+.. .++.++..... ......++....+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~-~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQA-QKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHH-HHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 478899999999999999998775 211 2368899987655543 23444432211 112345566666665
Q ss_pred hhC-CccEEEEEeCCc
Q 037310 83 VMK-RKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~ 97 (656)
... +..-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 345689999984
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.54 E-value=0.0043 Score=62.32 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 82 (656)
.++.|.|++|+||||||.+++... . ..-..++|++.....+.. .++.++..... ......++....+..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA-Q--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 589999999999999999998765 1 122357899887655432 24444432211 112244555555554
Q ss_pred hhC-CccEEEEEeCCcC
Q 037310 83 VMK-RKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~~ 98 (656)
... .+.-++|+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 443 3566999999843
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.012 Score=66.29 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
...|.|+|++|+||||||+.++... ... .+.++.. .+ .. .............+....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~----------~l----~~---~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----------EI----MS---KLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHH----------HH----SS---SSTTHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEch----------Hh----hh---hhhhhHHHHHHHHHHHHH
Confidence 3568999999999999999999875 222 2333321 11 00 001111112222233333
Q ss_pred CCccEEEEEeCCcCchh-------------hhhhccccCCCC-CCCcEEEEEceehhhhcc-cC----CcceEeeccCCh
Q 037310 85 KRKKFVLLLDDIWEPVD-------------LAQVGLLVPSAT-RASNKVVFTTLEFEIGGQ-ME----AHKSFEVECLGY 145 (656)
Q Consensus 85 ~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~-~~~~~iliTTR~~~~~~~-~~----~~~~~~l~~l~~ 145 (656)
.+...++++|+++.... ..++...+.... .....+|.||........ .. -...+.+...+.
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 44678999999953210 111222222111 133445556555432211 11 123467788888
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCCc
Q 037310 146 DDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGLP 182 (656)
Q Consensus 146 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 182 (656)
++-.+++...+.........+ ...+++.+.|..
T Consensus 375 ~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 375 TGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred HHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 888888887665443222222 345666666654
No 248
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.46 E-value=0.012 Score=59.19 Aligned_cols=155 Identities=10% Similarity=-0.060 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVM 84 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 84 (656)
.+++.++|+.|.||++.|..+.... . ...|+....+......++.++...+. ..-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~pl 73 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-A-AQGFEEHHTFSIDPNTDWNAIFSLCQ----------------------AMSL 73 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-H-HHTCCEEEEEECCTTCCHHHHHHHHH----------------------HHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-H-hCCCCeeEEEEecCCCCHHHHHHHhc----------------------CcCC
Confidence 5689999999999999999998765 1 12332211122222223332222111 1113
Q ss_pred CCccEEEEEeCCcC-c--hhhhhhccccCCCCCCCcEEEEEcee-------hhhhcc-cCCcceEeeccCChhhhHHHHH
Q 037310 85 KRKKFVLLLDDIWE-P--VDLAQVGLLVPSATRASNKVVFTTLE-------FEIGGQ-MEAHKSFEVECLGYDDSWKLFE 153 (656)
Q Consensus 85 ~~~~~LlVlDdv~~-~--~~~~~~~~~l~~~~~~~~~iliTTR~-------~~~~~~-~~~~~~~~l~~l~~~ea~~L~~ 153 (656)
-+++-++|+|+++. . ...+.+...+.... +++.+|+++.. ..+... ......++..+++.++..+.+.
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 46677899999976 3 34555655555443 56666665533 122222 2233578899999999998888
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037310 154 VKVGRDTLDSHPDIPELAKTVVKECGGLPLALIT 187 (656)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 187 (656)
+.+.......+ .+.+..+++.++|....+..
T Consensus 153 ~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 87755432222 34578889999998766554
No 249
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.0071 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999987
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0073 Score=60.20 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC------------CCC--ceEEEEEeCChhhHHHHHHHHHHHhCCCCCC----
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP------------NDF--DLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---- 67 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~------------~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 67 (656)
.++.|.|++|+||||||.+++... ... +.. ..++|++.....+..++. .+++.++.....
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 589999999999999999998753 111 111 478899987765444443 233444332110
Q ss_pred ---CCcccHH---HHHHHHHHhhC--CccEEEEEeCCc
Q 037310 68 ---WNSKSLL---EKAEDIFKVMK--RKKFVLLLDDIW 97 (656)
Q Consensus 68 ---~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv~ 97 (656)
....+.+ +....+...+. .+.-++|+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0011222 23334444443 456689999883
No 251
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.43 E-value=0.011 Score=60.68 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=35.9
Q ss_pred hhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccccccChhhhcCCC
Q 037310 382 RDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRLTRIPQEVISNLK 460 (656)
Q Consensus 382 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l~~~~l~~l~ 460 (656)
...|..+..|+.+.+..+ ....-...+.+..+|+.+.+. +.+..++.. +.++.+|+.+.+..+ ++.+...++.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 333444444555444443 222222334444444444443 233334332 444455555554432 4444444444455
Q ss_pred CCcEEEe
Q 037310 461 MLRVLRM 467 (656)
Q Consensus 461 ~L~~L~l 467 (656)
+|+.+.+
T Consensus 335 ~L~~i~i 341 (394)
T 4gt6_A 335 QLERIAI 341 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 5555544
No 252
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.40 E-value=0.0023 Score=63.82 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC-hhhHHHHHHHHHHHhCCCCCCCCcccHH-------HHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK-DLQLKRIQDCIARKIGLFSRSWNSKSLL-------EKA 77 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~-------~~~ 77 (656)
..++|+|++|+|||||++.+++........++++ ++-+++ .....++.+.+-..+.....+.....-- ...
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999887541111234444 565554 3344444333310011111111111000 111
Q ss_pred HHHHHhhCCccEEEEEeCC
Q 037310 78 EDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 78 ~~l~~~l~~~~~LlVlDdv 96 (656)
+.++. .++.+|+++||+
T Consensus 254 Eyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 254 KRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp HHHHH--TSCEEEEEEECH
T ss_pred HHHHh--cCCCEEEEEeCc
Confidence 22222 689999999999
No 253
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.38 E-value=0.0056 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|.|.|++|+||||.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 254
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.37 E-value=0.0087 Score=67.32 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC--CC-Cce-EEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP--ND-FDL-VIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIF 81 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~--~~-f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 81 (656)
.-+.|+|++|+|||++|+.+++...... .. .+. ++.++. +.............. +.
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G~~e~~l~~~---~~ 261 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRGEFEDRLKKV---MD 261 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHH---HH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccchHHHHHHHH---HH
Confidence 3578999999999999999998751111 11 111 222222 000000011122222 22
Q ss_pred HhhCCccEEEEEeCCcCchhhhhhccccCCCCCCCcEEEEEceehhhhc---c----cCCcceEeeccCChhhhHHHHHH
Q 037310 82 KVMKRKKFVLLLDDIWEPVDLAQVGLLVPSATRASNKVVFTTLEFEIGG---Q----MEAHKSFEVECLGYDDSWKLFEV 154 (656)
Q Consensus 82 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTTR~~~~~~---~----~~~~~~~~l~~l~~~ea~~L~~~ 154 (656)
.....++.+|++|.- ......+...+.. ...++|.+|....... . ......+.++..+.++..+++..
T Consensus 262 ~~~~~~~~iLfiD~~--~~~~~~L~~~l~~---~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 336 (758)
T 3pxi_A 262 EIRQAGNIILFIDAA--IDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (758)
T ss_dssp HHHTCCCCEEEECC----------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEEEcCc--hhHHHHHHHHHhc---CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 223467789999922 2222223333321 4456666666544211 0 01124688999999999999987
Q ss_pred HhcC
Q 037310 155 KVGR 158 (656)
Q Consensus 155 ~~~~ 158 (656)
....
T Consensus 337 ~~~~ 340 (758)
T 3pxi_A 337 LRDR 340 (758)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 6544
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.33 E-value=0.0069 Score=67.24 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFKVMK 85 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 85 (656)
+-|.++|++|+|||.+|+++++.. . + -++.++. . .++... .........+.+...-.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~---~--~---~f~~v~~----~----~l~s~~-------vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC---Q--A---NFISIKG----P----ELLTMW-------FGESEANVREIFDKARQ 568 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT---T--C---EEEECCH----H----HHHTTT-------CSSCHHHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh---C--C---ceEEecc----c----hhhccc-------cchHHHHHHHHHHHHHH
Confidence 447789999999999999999986 2 2 2333321 1 111111 11222233333333335
Q ss_pred CccEEEEEeCCcCch--------h--------hhhhccccCCCCCCCcEEEE-Eceehhhhcc----c-CCcceEeeccC
Q 037310 86 RKKFVLLLDDIWEPV--------D--------LAQVGLLVPSATRASNKVVF-TTLEFEIGGQ----M-EAHKSFEVECL 143 (656)
Q Consensus 86 ~~~~LlVlDdv~~~~--------~--------~~~~~~~l~~~~~~~~~ili-TTR~~~~~~~----~-~~~~~~~l~~l 143 (656)
..+++|+||++|... + ..++...+.........+|| ||..+...+. . .-...+.++.-
T Consensus 569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 678999999997531 0 11222222222212334444 4444332211 1 12345667766
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHcCCC
Q 037310 144 GYDDSWKLFEVKVGRDTLDSHPDIPELAKTVVKECGGL 181 (656)
Q Consensus 144 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 181 (656)
+.++-.++|+.+..+.......+ ...+++.+.|+
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 77777777776665433222222 45566776664
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.31 E-value=0.027 Score=57.90 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|.++|++|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998876
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.30 E-value=0.0058 Score=61.44 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 82 (656)
+++.|.|++|+||||||.+++... ... -..++|++.....+.. .++.++...... .....++....+..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~-~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA-QRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 589999999999999999998775 211 2358899886655532 234444322110 11234444444443
Q ss_pred hh-CCccEEEEEeCCc
Q 037310 83 VM-KRKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv~ 97 (656)
.. ..+.-++|+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 32 2445589999984
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.25 E-value=0.011 Score=57.91 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRSWNSKSLLEKAEDIFK 82 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 82 (656)
..++++|+|++|+||||++..++..+ ....+ ..+..+..... ....+.+....+..+.+... ..+..+....+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~~~~l~~al~~ 179 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYTKEEFQQAKEL 179 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCCHHHHHHHHHH
Confidence 45799999999999999999999876 21122 24556654332 22333333333333322111 1122333333333
Q ss_pred hhCCccEEEEEeCC
Q 037310 83 VMKRKKFVLLLDDI 96 (656)
Q Consensus 83 ~l~~~~~LlVlDdv 96 (656)
+ .+.=++|+|-.
T Consensus 180 -~-~~~dlvIiDT~ 191 (296)
T 2px0_A 180 -F-SEYDHVFVDTA 191 (296)
T ss_dssp -G-GGSSEEEEECC
T ss_pred -h-cCCCEEEEeCC
Confidence 3 44457888954
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.24 E-value=0.012 Score=60.00 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC----CCCceEEEEEeCChhhHHHHHHHHHHHhC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP----NDFDLVIWVVVSKDLQLKRIQDCIARKIG 62 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (656)
.++.|+|++|+||||||..++-.. ... ..-..++|++.........+ ..+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 489999999999999999876432 111 12346889987665444333 23455444
No 260
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.22 E-value=0.017 Score=54.11 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCC---C-CCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTP---N-DFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~---~-~f~~~~wv~~~~~ 47 (656)
.+++|+|++|+|||||++.++... ... . ....++|+.....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCC
Confidence 589999999999999999998743 111 1 2345788876543
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.21 E-value=0.0023 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+.|+|+|++|+||||+|+.++...
T Consensus 3 ~~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 3 KNLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp --CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999876
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.21 E-value=0.012 Score=59.18 Aligned_cols=91 Identities=26% Similarity=0.388 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCC---CC-ceEEEEEeCChhhHHHHHHHHHHHhCCCC----------CCCCcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPN---DF-DLVIWVVVSKDLQLKRIQDCIARKIGLFS----------RSWNSK 71 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~ 71 (656)
.++.|+|++|+|||||+..++... .... .. ..++|++........++ ..++...+... ......
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 589999999999999999998765 2111 11 24588887654332222 23333332211 000111
Q ss_pred cHHHHHHHHHHhhC------CccEEEEEeCCcC
Q 037310 72 SLLEKAEDIFKVMK------RKKFVLLLDDIWE 98 (656)
Q Consensus 72 ~~~~~~~~l~~~l~------~~~~LlVlDdv~~ 98 (656)
...+....+...+. .+.-+||+|.+-.
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 22233344444442 4677999999843
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.13 E-value=0.012 Score=57.67 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCC-CCCcccHHHH-HHH
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSR-SWNSKSLLEK-AED 79 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 79 (656)
...++++|+|++|+||||++..++..+ ... -..+.++...... ...+-+...++..+.+.- .....+.... ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF-VDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH-HHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH-Hhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 346799999999999999999999877 221 2245566543221 222223344554443211 1111222222 233
Q ss_pred HHHhhCCccEEEEEeCCc
Q 037310 80 IFKVMKRKKFVLLLDDIW 97 (656)
Q Consensus 80 l~~~l~~~~~LlVlDdv~ 97 (656)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444444445578889764
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.10 E-value=0.0029 Score=56.90 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|.|+|++|+||||+|+.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999986
No 265
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.10 E-value=0.0052 Score=60.72 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.|.|+|++|+|||+||..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999876
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.09 E-value=0.0027 Score=56.65 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|.|++|+||||+|+.++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 267
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.08 E-value=0.0032 Score=62.21 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
++.|||+|.|.|||||||.|..++.-. ... + ..|.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL-A~~-G-kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF-SIL-G-KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH-HHC-C-CeEEEEecCC
Confidence 467999999999999999998887765 111 1 2466666553
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.08 E-value=0.0035 Score=58.04 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..-++|+|+|++|+|||||++.++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 445789999999999999999999876
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.07 E-value=0.016 Score=57.35 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIA 58 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 58 (656)
.++.|.|.+|+||||+|..++... .... ..++|++... +..++...+.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 478999999999999999998776 2222 5788888763 3344444443
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.03 E-value=0.006 Score=68.74 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.++|++|+|||++|+.+++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999999999976
No 271
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.03 E-value=0.012 Score=60.76 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC-hhhHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK-DLQLKRIQDCIAR 59 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~ 59 (656)
+.++|+|++|+||||||..++... .. ..-+.++++-++. .....++...+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 358899999999999999998775 11 1223455666554 3455566655543
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.02 E-value=0.0029 Score=58.29 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.99 E-value=0.004 Score=57.32 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
++....+|+|+|+.|+||||+|+.++..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567789999999999999999999874
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.96 E-value=0.0041 Score=55.94 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
+.+|.|.|++|+||||+|+.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 36899999999999999999998
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.89 E-value=0.004 Score=57.19 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0044 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.83 E-value=0.0047 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+++|+|++|+||||+++.++...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998864
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.80 E-value=0.0039 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|+|++|+||||+|+.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999976
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.79 E-value=0.028 Score=57.75 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|.++|++|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999876
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.78 E-value=0.0062 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|+|.|++|+||||+|+.+++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.75 E-value=0.0053 Score=56.45 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|+|++|+||||+|+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 282
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.72 E-value=0.023 Score=58.06 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCCe
Q 037310 362 SSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLKR 440 (656)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~~ 440 (656)
..+.+++.+.+..+ +..+....|..+..|+.+.+..+ ....-...+.+..+|+.+.+.. ++..++. .+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccc
Confidence 44555665555443 44444445566666666666555 3333334455566666666543 2444443 2566666666
Q ss_pred EecCCccccccChhhhcCCCCCcEEEee
Q 037310 441 LNLEFTRLTRIPQEVISNLKMLRVLRMY 468 (656)
Q Consensus 441 L~l~~~~~~~l~~~~l~~l~~L~~L~l~ 468 (656)
+.+..+.++.++..++.++.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcC
Confidence 6666666666666666666666666664
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.71 E-value=0.0039 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.|+|+||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998875
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.70 E-value=0.0052 Score=55.96 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|.|++|+||||+|+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 285
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.69 E-value=0.072 Score=54.84 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARK 60 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~ 60 (656)
..++|.|.+|+|||+|+.++++.. .+.+-+.++++-++ +.....++.+.+...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 357999999999999999999875 23344666777665 455677777777765
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.68 E-value=0.0062 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 287
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.67 E-value=0.019 Score=58.66 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=87.6
Q ss_pred cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCC
Q 037310 360 ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHL 438 (656)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L 438 (656)
.+.++..|+.+.+..+ ++.+....|..+.+|+.+.+..+ ....-...+..+.+|+.+.+.++.++.++. .+.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4577889999998766 77777778899999999999776 444444578889999999999888988876 48899999
Q ss_pred CeEecCCccccccChhhhcCCCCCcEEEeee
Q 037310 439 KRLNLEFTRLTRIPQEVISNLKMLRVLRMYE 469 (656)
Q Consensus 439 ~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~ 469 (656)
+.+.+..+ ++.++..++.++.+|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999765 8888888888999999888753
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.67 E-value=0.0055 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|+|++|+||||||+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 579999999999999999999876
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.65 E-value=0.0055 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999976
No 290
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.64 E-value=0.014 Score=66.38 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+.|+|++|+|||++|+.+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.62 E-value=0.029 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 292
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.59 E-value=0.0061 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|+|++|+||||+++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999765
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.006 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|.|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 294
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.56 E-value=0.035 Score=57.34 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS 45 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 45 (656)
..+++|.++|.+|+||||+|..++..+ ....+. .+.-+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL-REKHKK-KVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH-HHTSCC-CEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEEecC
Confidence 357899999999999999999999877 222122 45555554
No 295
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.55 E-value=0.073 Score=54.57 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=88.3
Q ss_pred cCCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCC
Q 037310 360 ESSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHL 438 (656)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L 438 (656)
.+.++..|+.+.+..+ +..+....|..+..|+.+.+... ....-...|.++.+|+.+.+..+ ++.+.. .+.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4677888888888655 44566667888899999998765 44444457888889999998754 666655 48888999
Q ss_pred CeEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 439 KRLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 439 ~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
+.+.+..+ ++.+...++.++++|+.+.+.++.. ....+.....|+.+.+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~---------------~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS---------------QWNAISTDSGLQNLPVA 386 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH---------------HHHTCBCCCCC------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee---------------ehhhhhccCCCCEEEeC
Confidence 99998654 7888888888999999999877651 12344555666666654
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.55 E-value=0.0052 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.|+|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999986
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.53 E-value=0.0068 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|+|+.|+||||+|+.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999865
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.53 E-value=0.0066 Score=55.91 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0073 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.281 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.51 E-value=0.0078 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+|+|+|++|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998864
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.51 E-value=0.0059 Score=54.99 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|.|+|++|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.51 E-value=0.0062 Score=56.18 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|+|+|++|+||||+++.++...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 303
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.49 E-value=0.034 Score=54.36 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh-hhHHHHHHHHHHHhCCCCCC-CCcccHHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD-LQLKRIQDCIARKIGLFSRS-WNSKSLLEKAEDIFK 82 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 82 (656)
..+++++|++|+||||++..++... ... -..+.++..... +...+.+....+..+.+.-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 6799999999999999999999876 222 234666665432 22223333444444332111 112233333333333
Q ss_pred hhC-CccEEEEEeCCc
Q 037310 83 VMK-RKKFVLLLDDIW 97 (656)
Q Consensus 83 ~l~-~~~~LlVlDdv~ 97 (656)
.+. +.-=++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 332 233378888764
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.48 E-value=0.039 Score=53.55 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCC-------CceEEEEEeCChh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPND-------FDLVIWVVVSKDL 48 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~-------f~~~~wv~~~~~~ 48 (656)
.++.|+|++|+||||||..++......... -..++|++.....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 589999999999999999998654111000 1346788776544
No 305
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.47 E-value=0.0084 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.-.+|+|.|++|.|||||++.++...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998876
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.46 E-value=0.0074 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.44 E-value=0.0064 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++++|.|+.|+|||||++.++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.42 E-value=0.0085 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|++|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.42 E-value=0.008 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 310
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.40 E-value=0.04 Score=56.95 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC-ChhhHHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS-KDLQLKRIQDCIARK 60 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~ 60 (656)
.++|.|.+|+|||+|+.++++.. .+.+-+.++++-++ +.....++...+...
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 57999999999999999999875 23345677777765 455677777777754
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0075 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|+||||+|+.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999986
No 312
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.38 E-value=0.0081 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-++|+|+|++|+|||||++.++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999776
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.38 E-value=0.0059 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|+|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999976
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.38 E-value=0.0087 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
...|+|+|++|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999987
No 315
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.36 E-value=0.0079 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|+|++|+||||+|+.++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.36 E-value=0.0083 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 037310 5 VGILGLYGMGGVGKTTLLTLIN 26 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~ 26 (656)
-.+++|+|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999644
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.36 E-value=0.0093 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|+|+.|+|||||++.++...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.35 E-value=0.022 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.447 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|+||||+|+.+++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.32 E-value=0.009 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.30 E-value=0.0099 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.29 E-value=0.0071 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999976
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.28 E-value=0.0093 Score=54.25 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.28 E-value=0.0093 Score=54.98 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|+|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.28 E-value=0.0085 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.27 E-value=0.0088 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|+|+.|+||||+|+.++. .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C
Confidence 4799999999999999999988 5
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.27 E-value=0.011 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|+|++|+||||+|+.++...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 327
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.26 E-value=0.021 Score=48.14 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=34.2
Q ss_pred EEeCCCCCCc--ccCccccCCCCCCeEecCCccccccChhhhcCCCCCcEEEeeecC
Q 037310 417 HLDPARSKIR--RLPMELKYLVHLKRLNLEFTRLTRIPQEVISNLKMLRVLRMYECG 471 (656)
Q Consensus 417 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 471 (656)
.++.++++++ .+|..+ ..+|++|+|++|+++.+|.+.+..+++|++|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5556666665 666532 2356777777777777776666667777777777665
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.25 E-value=0.01 Score=54.71 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 037310 6 GILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 329
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.22 E-value=0.038 Score=54.64 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS 45 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 45 (656)
...++++|+|++|+||||++..++... .. .-..+.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l-~~--~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY-AE--LGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH-HH--TTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEeCC
Confidence 346799999999999999999999876 22 22345666554
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.19 E-value=0.012 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|+|.|++|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998876
No 331
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.18 E-value=0.012 Score=56.30 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+|+|.|+.|+||||+++.++...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999875
No 332
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.17 E-value=0.05 Score=55.78 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEe
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVV 44 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 44 (656)
...+++|+|++|+||||++..++... ... -..+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH-HTT--TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEeec
Confidence 45799999999999999999999887 222 223555554
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.16 E-value=0.007 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 334
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.16 E-value=0.0086 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-++++|+|+.|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.012 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.++...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.15 E-value=0.011 Score=56.72 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|.|.|++|+||||+|+.++...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999874
No 337
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.15 E-value=0.065 Score=54.93 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=67.8
Q ss_pred CCCCCCcceEeccccCCcccchhHHhcCCcccEEEccCCCCCccCccccCCcccCcEEeCCCCCCcccCc-cccCCCCCC
Q 037310 361 SSSSPHLQTLFLGSNDLNEVNRDFFQFMASLRVLTLSDGSLPGHLLTGISNLVSLQHLDPARSKIRRLPM-ELKYLVHLK 439 (656)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 439 (656)
+.++..++.+.+..+ ...+....|..+..++.+..... .. ....+....+|+.+.+..+ +..++. .+.++.+|+
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~-~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV-IV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS-EE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCce-ee--ccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 456666777666654 23344444566666666655443 11 1123555566666665443 444443 356666666
Q ss_pred eEecCCccccccChhhhcCCCCCcEEEeeecCCCCcCCCcccccCccccHHHhhcCCCCcEEEEE
Q 037310 440 RLNLEFTRLTRIPQEVISNLKMLRVLRMYECGSDKQEGDSILIGGREVLVVEILSLQHLNVLTVT 504 (656)
Q Consensus 440 ~L~l~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 504 (656)
.+++..+ ++.++..++.++.+|+.+.+..+- .......+.++.+|+.+.+.
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l-------------~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLSL-------------RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTTC-------------CEECTTTBTTCTTCCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECccc-------------cEehHHHhhCCCCCCEEEEC
Confidence 6666543 556665556666666666664331 22223345666666666665
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.14 E-value=0.012 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.13 E-value=0.012 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|.|.|++|+||||+|+.++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 340
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.11 E-value=0.0063 Score=59.47 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.....+|+|.|+.|+||||+|+.+.+.+
T Consensus 1 Ms~~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp -CTTSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567899999999999999999998865
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.10 E-value=0.013 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.09 E-value=0.061 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|+|.|+.|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998776
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.07 E-value=0.012 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++++|.|..|+|||||+..++...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999876
No 344
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.07 E-value=0.032 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.492 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.++|.|++|+||||+|+.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999986
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.05 E-value=0.011 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.05 E-value=0.011 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...|+|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 347
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.05 E-value=0.013 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|+|+.|+||||||..++.+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999999976
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.05 E-value=0.056 Score=52.84 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChh-hHHHHHHHHHHHhCCCCCC-CCcccHHHHHH-HH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDL-QLKRIQDCIARKIGLFSRS-WNSKSLLEKAE-DI 80 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~l 80 (656)
..++++|+|++|+||||++..++... ... -..+.++...... ........+....+...-. ....+..+..+ .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-HHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999999999876 222 2245566543322 2222223344444332110 01123333322 23
Q ss_pred HHhhCCccEEEEEeCC
Q 037310 81 FKVMKRKKFVLLLDDI 96 (656)
Q Consensus 81 ~~~l~~~~~LlVlDdv 96 (656)
......+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332234457888986
No 349
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.05 E-value=0.013 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+|++|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999976
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.02 E-value=0.014 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||++.++.-.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999998865
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.02 E-value=0.015 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 353
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.02 E-value=0.013 Score=56.94 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|.|++|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.00 E-value=0.012 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.00 E-value=0.012 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 356
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.99 E-value=0.012 Score=54.68 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999875
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.99 E-value=0.012 Score=54.47 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.99 E-value=0.012 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.96 E-value=0.014 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999874
No 360
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.95 E-value=0.013 Score=54.94 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|++|+||||+|+.++..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.93 E-value=0.015 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.92 E-value=0.016 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||||+.++...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.91 E-value=0.014 Score=57.81 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|.|++|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999976
No 364
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.90 E-value=0.0061 Score=60.73 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.++|.|.+|+|||+|+.++++..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 467999999999999999998864
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.90 E-value=0.011 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999987
No 366
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.90 E-value=0.016 Score=56.31 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
..+.+|+|+|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 367
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.88 E-value=0.063 Score=55.36 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999999875
No 368
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.88 E-value=0.015 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|.|++|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999999876
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.86 E-value=0.014 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.86 E-value=0.034 Score=67.45 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCC---CCcccHHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRS---WNSKSLLEKAEDIF 81 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 81 (656)
.+.|.|+|++|+|||+||.+++... . ..-..+.|+++....+... ++.++..... ......++..+.++
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4689999999999999999998876 2 2223577887766554444 3344422111 11223445555555
Q ss_pred Hhh-CCccEEEEEeCCc
Q 037310 82 KVM-KRKKFVLLLDDIW 97 (656)
Q Consensus 82 ~~l-~~~~~LlVlDdv~ 97 (656)
+.. +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 443 3567799999994
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.85 E-value=0.014 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 372
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.83 E-value=0.012 Score=54.83 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998865
No 373
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.82 E-value=0.059 Score=53.44 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCI 57 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 57 (656)
.++.|.|.+|+||||+|..++... .. .-..++|++..- +..++...+
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSlEm--s~~ql~~Rl 93 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSLEM--SAEQLALRA 93 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEESSS--CHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeCCC--CHHHHHHHH
Confidence 478999999999999999999876 22 223677887653 333444444
No 374
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.82 E-value=0.017 Score=57.01 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeC
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVS 45 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 45 (656)
...+|+|.|+.|+|||||++.++.-. ....+-..+.+++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll-~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL-ARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HTSTTCCCEEEEEGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc-cccCCCCeEEEEecC
Confidence 35699999999999999999998866 221111345666643
No 375
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.74 E-value=0.017 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999776
No 376
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.71 E-value=0.094 Score=55.09 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...++|+|+|.+|+||||++..++..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999776
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.67 E-value=0.017 Score=53.77 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998865
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.59 E-value=0.022 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 037310 5 VGILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
..+|+|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.59 E-value=0.014 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|.|+|++|+||||+|+.++...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999876
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.57 E-value=0.0087 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
++|+|.|+.|+||||+|+.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 381
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.56 E-value=0.015 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-+.|.|.|++|+||||||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999875
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.55 E-value=0.021 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+|+|+|+.|+||||+|+.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 383
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.49 E-value=0.032 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999998754
No 384
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.48 E-value=0.064 Score=45.09 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=20.6
Q ss_pred cCcEEeCCCCCCcccCcc-ccCCCCCCeEecCCccc
Q 037310 414 SLQHLDPARSKIRRLPME-LKYLVHLKRLNLEFTRL 448 (656)
Q Consensus 414 ~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 448 (656)
+|++|+|++|.++.+|.. +..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456666666666666553 45566666666666533
No 385
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.48 E-value=0.019 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999976
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.47 E-value=0.023 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||+|+.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.46 E-value=0.021 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...|+|.|++|+||||+|+.+++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.44 E-value=0.013 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh-hcc
Q 037310 6 GILGLYGMGGVGKTTLLTLIN-NKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~-~~~ 29 (656)
.+++|+|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999 654
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.43 E-value=0.018 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998765
No 390
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.40 E-value=0.076 Score=55.15 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.++.|.|.+|+||||+|..++... ... -..++|++...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~-a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEM 235 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH-HHT--TCEEEEECSSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHH-HHc--CCEEEEEECCC
Confidence 478999999999999999999876 222 23577887654
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.37 E-value=0.021 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 037310 6 GILGLYGMGGVGKTTLLTLINN 27 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~ 27 (656)
.+++|.|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999884
No 392
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.37 E-value=0.013 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++++|+|+.|+|||||++.+..-+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.34 E-value=0.024 Score=53.79 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
.++.|.|++|+||||||.+++... . ..-..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~-~--~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG-L--KMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEccCC
Confidence 488999999999999999887765 1 11235778876543
No 394
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.33 E-value=0.076 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++|+|++|+||||+++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999999876
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.32 E-value=0.024 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998654
No 396
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.32 E-value=0.084 Score=53.99 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCC-CCCc-eEEEEEeC-ChhhHHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTP-NDFD-LVIWVVVS-KDLQLKRIQDCIARK 60 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~-~~f~-~~~wv~~~-~~~~~~~~~~~i~~~ 60 (656)
.++|.|.+|+|||+|+.++++.. ... ++=+ .++++-++ +.....++.+.+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~ 208 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQT 208 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhc
Confidence 36899999999999999999875 221 1111 45566554 556677777776553
No 397
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.32 E-value=0.13 Score=54.49 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIA 58 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 58 (656)
.++.|.|.+|+||||+|.+++... ... +-..++|++.... ..++...++
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~-a~~-~g~~vl~~s~E~s--~~~l~~r~~ 291 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW-GTA-MGKKVGLAMLEES--VEETAEDLI 291 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH-TTT-SCCCEEEEESSSC--HHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH-HHh-cCCcEEEEeccCC--HHHHHHHHH
Confidence 478999999999999999999886 222 1235788887553 334444443
No 398
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.31 E-value=0.073 Score=57.85 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHH
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCI 57 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 57 (656)
-+++.|.|++|+||||++..+..........-...+.+......-...+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~ 216 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHH
Confidence 36899999999999999888766541111111234556555555444444433
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.28 E-value=0.022 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.28 E-value=0.021 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.27 E-value=0.02 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|+|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999986
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.23 E-value=0.028 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998876
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.23 E-value=0.02 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|+|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 404
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.21 E-value=0.028 Score=51.34 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 1 MEEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 1 ~~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
|.+..-.|+|+|++|+|||||.+.++...
T Consensus 1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34455678999999999999999998864
No 405
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.20 E-value=0.038 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998654
No 406
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.19 E-value=0.027 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++++|.|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 407
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.18 E-value=0.096 Score=54.26 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcHHHHHH-HHhhcccCCCCCCce-EEEEEeC-ChhhHHHHHHHHHHHhCC-------CCCCCCcc-cH--
Q 037310 7 ILGLYGMGGVGKTTLLT-LINNKFFDTPNDFDL-VIWVVVS-KDLQLKRIQDCIARKIGL-------FSRSWNSK-SL-- 73 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~~-~~-- 73 (656)
.++|.|.+|+|||+||. .+++.. ..+. ++++-++ +.....++.+.+...-.. .+.+.... ..
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 47899999999999965 666653 3453 3566655 455666777777653211 11111111 00
Q ss_pred ----HHHHHHHHHhhCCccEEEEEeCC
Q 037310 74 ----LEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 74 ----~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
-...+.++. .++.+|+++||+
T Consensus 252 ~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 011222222 689999999998
No 408
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.17 E-value=0.094 Score=54.27 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHH-HHhhcccCCCCCCce-EEEEEeC-ChhhHHHHHHHHHHHhCCCC-----CCCCcccHH----
Q 037310 7 ILGLYGMGGVGKTTLLT-LINNKFFDTPNDFDL-VIWVVVS-KDLQLKRIQDCIARKIGLFS-----RSWNSKSLL---- 74 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~---- 74 (656)
.++|.|.+|+|||+||. .+++.. +-+. ++++-++ +.....++.+.+...-.... .+.......
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999965 666654 2443 3566655 45566677777765322110 111111111
Q ss_pred -----HHHHHHHHhhCCccEEEEEeCC
Q 037310 75 -----EKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 75 -----~~~~~l~~~l~~~~~LlVlDdv 96 (656)
...+.++. .++.+|+++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11222222 689999999998
No 409
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.16 E-value=0.04 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998764
No 410
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.16 E-value=0.081 Score=54.11 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCC--------CCCc-eEEEEEeC-ChhhHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTP--------NDFD-LVIWVVVS-KDLQLKRIQDCIAR 59 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~--------~~f~-~~~wv~~~-~~~~~~~~~~~i~~ 59 (656)
.++|.|.+|+|||+|+.++++.. ... ++=+ .++++-++ +.....++.+.+..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 46899999999999999999875 321 1112 45566554 55566677776654
No 411
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.16 E-value=0.028 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|+.|+|||||++.++...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998865
No 412
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.16 E-value=0.033 Score=54.97 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
...++|+|+|.||+||||+|..++... ... + ..+.-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L-a~~-G-~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF-SIL-G-KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH-HHC-C-CeEEEEeCCC
Confidence 356899999999999999999998877 222 2 2466666543
No 413
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.16 E-value=0.019 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.|+|++|+||||+|..+++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 414
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.15 E-value=0.023 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998654
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.04 E-value=0.058 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+|+|.|+.|+||||+++.+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.02 E-value=0.022 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999764
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.01 E-value=0.027 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998764
No 418
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.00 E-value=0.074 Score=52.87 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKR 52 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 52 (656)
..+++++.|.||+||||+|..++... . ..-..++-++.....+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~l-a--~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQL-A--KVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH-T--TSSSCEEEEECCSSCHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHH-H--hCCCcEEEEECCCCCChhH
Confidence 46788999999999999999999887 2 2234577777765555443
No 419
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.00 E-value=0.033 Score=51.41 Aligned_cols=37 Identities=22% Similarity=0.084 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.|.+.|.||+||||+|..++... . ..++++ ..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~-~~G~~V-~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-L-RQGVRV-MAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-H-HTTCCE-EEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-H-HCCCCE-EEEEeCC
Confidence 58889999999999999998876 2 234444 4444443
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.99 E-value=0.046 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998764
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.98 E-value=0.046 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 479999999999999999998654
No 422
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.97 E-value=0.045 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999998765
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.96 E-value=0.04 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 424
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.96 E-value=0.027 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|.|++|+||||||..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 4689999999999999999999876
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.96 E-value=0.033 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|+|.+|+|||||+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999875
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.96 E-value=0.047 Score=51.56 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998754
No 427
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.96 E-value=0.046 Score=51.19 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998765
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.96 E-value=0.15 Score=53.09 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIA 58 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 58 (656)
.++.|.|.+|+||||+|..++... ... .-..++|++...+ ..++...++
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~-a~~-~g~~vl~~slE~~--~~~l~~R~~ 249 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNA-ALK-EGVGVGIYSLEMP--AAQLTLRMM 249 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESSSC--HHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEECCCC--HHHHHHHHH
Confidence 478999999999999999998876 211 1235778877543 334444443
No 429
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.92 E-value=0.045 Score=52.74 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
++|+|.|.||+||||+|..++... ... + ..+.-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a~~-G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-HAM-G-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-HTT-T-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-HHC-C-CcEEEEcCCC
Confidence 688889999999999999999887 222 2 2466666543
No 430
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.89 E-value=0.049 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998754
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.88 E-value=0.033 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999999853
No 432
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.86 E-value=0.091 Score=54.44 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHH-HHhhcccCCCCCCc-eEEEEEeC-ChhhHHHHHHHHHHHhCC--------CCCCCCcc----
Q 037310 7 ILGLYGMGGVGKTTLLT-LINNKFFDTPNDFD-LVIWVVVS-KDLQLKRIQDCIARKIGL--------FSRSWNSK---- 71 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~-~~~~~~~~~~~~f~-~~~wv~~~-~~~~~~~~~~~i~~~l~~--------~~~~~~~~---- 71 (656)
.++|.|.+|+|||+||. .+++.. . -+ .++++-++ +.....++.+.+...-.. +.++....
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46899999999999965 666653 2 44 34566555 445566666666542111 11111111
Q ss_pred --cHHHHHHHHHHhhCCccEEEEEeCC
Q 037310 72 --SLLEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 72 --~~~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
..-...+.++. .++.+|+++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11122233333 689999999998
No 433
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.86 E-value=0.097 Score=54.72 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCCh
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKD 47 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (656)
.++.|.|.+|+||||||..++... ... .-..++|++....
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~-~~~-~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNV-ATK-TNENVAIFSLEMS 243 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-HHH-SSCCEEEEESSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHh-CCCcEEEEECCCC
Confidence 478999999999999999998876 111 1225788876543
No 434
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.83 E-value=0.05 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||++.++.-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 435
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.82 E-value=0.051 Score=51.80 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|.|||||.+.++.-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 436
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.79 E-value=0.024 Score=54.51 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.....|+|.|..|+||||+|+.+++..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999999876
No 437
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.77 E-value=0.043 Score=48.78 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
......|+|+|.+|+|||||...+....
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4567789999999999999999998754
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.77 E-value=0.088 Score=63.92 Aligned_cols=85 Identities=19% Similarity=0.154 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 82 (656)
+++.|.|++|+||||||.+++... ... -..++|++.....+... ++.++...... ...+.++....++.
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~-a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAA-QRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH-HTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-Hhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 589999999999999999999887 222 23688998776655432 45554432211 12345555555554
Q ss_pred hh-CCccEEEEEeCCcC
Q 037310 83 VM-KRKKFVLLLDDIWE 98 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv~~ 98 (656)
.. ....-++|+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 33 34566999999853
No 439
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.72 E-value=0.086 Score=48.23 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.6
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHH
Q 037310 6 GILGLY-GMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKR 52 (656)
Q Consensus 6 ~vv~i~-G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 52 (656)
++|+|+ +.||+||||+|..++... .. .-..+.-++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l-a~--~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL-SR--SGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH-HH--TTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH-HH--CCCeEEEEECCCCCCHHH
Confidence 678888 689999999999998887 22 223577777765554433
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.71 E-value=0.04 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35699999999999999999999876
No 441
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.70 E-value=0.035 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.629 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997654
No 442
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.69 E-value=0.054 Score=52.35 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999998765
No 443
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.67 E-value=0.036 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 444
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.66 E-value=0.045 Score=53.44 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.++|+|.|.||+||||+|..++... ... + ..+.-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L-a~~-G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL-AEM-G-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH-HHC-C-CeEEEEecCC
Confidence 4788999999999999999998877 222 2 2455666543
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.62 E-value=0.058 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999998654
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.62 E-value=0.036 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.59 E-value=0.04 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++|+|+|.+|+|||||+..++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999875
No 448
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.58 E-value=0.041 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+||||+++.++...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 589999999999999999998765
No 449
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.56 E-value=0.078 Score=53.01 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHH
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLK 51 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 51 (656)
..+++.+.|.||+||||+|..++... .....-..+.-++.....+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChH
Confidence 45899999999999999999998877 200222356677776554443
No 450
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.56 E-value=0.038 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.|+|+|++|+|||||.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.52 E-value=0.047 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.|+|+|.+|+|||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.47 E-value=0.038 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999998754
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.46 E-value=0.039 Score=52.41 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999998865
No 454
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.43 E-value=0.068 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++.|.|++|+||||++..++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998876
No 455
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.41 E-value=0.088 Score=63.06 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHHHHHHHHHHHhCCCCCCC---CcccHHHHHHHHHH
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLKRIQDCIARKIGLFSRSW---NSKSLLEKAEDIFK 82 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 82 (656)
+++.|.|++|+||||||.+++... ...-..++|++.....+... ++.++...... .+.+.++....+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred hh-CCccEEEEEeCC
Q 037310 83 VM-KRKKFVLLLDDI 96 (656)
Q Consensus 83 ~l-~~~~~LlVlDdv 96 (656)
.. ..+.-++|+|.+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 456
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.35 E-value=0.11 Score=53.58 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcccCCCC--CCceEEEEEeC-ChhhHHHHHHHHHHH
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKFFDTPN--DFDLVIWVVVS-KDLQLKRIQDCIARK 60 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~~~~~~--~f~~~~wv~~~-~~~~~~~~~~~i~~~ 60 (656)
.++|.|.+|+|||+|+.+++++. ...+ .-+.++++-++ +.....++...+...
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKT 209 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhc
Confidence 46789999999999999999876 3211 11345566554 556677777777654
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.34 E-value=0.045 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..+|+|.|+.|+||||+|+.++...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.34 E-value=0.041 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999998653
No 459
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.33 E-value=0.13 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.|+|-|+-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 460
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.32 E-value=0.041 Score=52.43 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998765
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.30 E-value=0.04 Score=49.58 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 462
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.30 E-value=0.042 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.|.|+|++|+|||++|+.+++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999976
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.30 E-value=0.051 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|+|+|.+|+|||||...++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998753
No 464
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.27 E-value=0.14 Score=53.06 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=49.4
Q ss_pred EEEEEcCCCCcHHHHH-HHHhhcccCC----CCCCc-eEEEEEeC-ChhhHHHHHHHHHHHhCC-------CCCCCCcc-
Q 037310 7 ILGLYGMGGVGKTTLL-TLINNKFFDT----PNDFD-LVIWVVVS-KDLQLKRIQDCIARKIGL-------FSRSWNSK- 71 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA-~~~~~~~~~~----~~~f~-~~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~~- 71 (656)
.++|.|.+|+|||+|| ..+++.. .. ..+-+ .++++-++ +.....++.+.+...-.. .+.+....
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 4689999999999995 4666654 11 12344 35666665 455666777777653211 11111111
Q ss_pred cH------HHHHHHHHHhhCCccEEEEEeCC
Q 037310 72 SL------LEKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 72 ~~------~~~~~~l~~~l~~~~~LlVlDdv 96 (656)
.. -...+.++. .++.+|+++||+
T Consensus 243 r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 00 011222222 589999999998
No 465
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.26 E-value=0.043 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+++.|+|+.|+||||+|..++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999998887765
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.28 Score=52.99 Aligned_cols=24 Identities=42% Similarity=0.760 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|+|||||.+.++.-.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 489999999999999999998654
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.24 E-value=0.071 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..++++.|.||+||||++..++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999876
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.20 E-value=0.05 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...|+|.|..|+||||+|+.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999986
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.19 E-value=0.058 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+....|+|+|++|+||||+|+.++...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999998865
No 470
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.17 E-value=0.044 Score=53.68 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.+++|.|++|+|||||++.++... ..... ..+.|+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G-~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW-GTAMG-KKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH-HHTSC-CCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HHHcC-CeEEEEeCcC
Confidence 489999999999999999998876 11111 1466776543
No 471
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.16 E-value=0.14 Score=47.24 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceE
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLV 39 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~ 39 (656)
..|+|.|+.|+||||+++.+++.. . ..+++++
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v~ 38 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEVQ 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCcc
Confidence 589999999999999999999887 2 2345543
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.15 E-value=0.055 Score=52.96 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 479999999999999999998755
No 473
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.11 E-value=0.046 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+.|+|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.06 E-value=0.14 Score=46.80 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceE
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLV 39 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~ 39 (656)
+.|+|-|+-|+||||+++.+++.. .+.++++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCCEE
Confidence 578999999999999999999988 3455544
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.02 E-value=0.1 Score=48.97 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEE
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWV 42 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv 42 (656)
.+|+|.|+.|+||||+++.+++.. . ..++..+...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeee
Confidence 589999999999999999999887 2 2345534443
No 476
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.92 E-value=0.084 Score=50.10 Aligned_cols=40 Identities=33% Similarity=0.320 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhH
Q 037310 8 LGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQL 50 (656)
Q Consensus 8 v~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (656)
|+|.|.||+||||+|..++... ... + ..+.-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l-a~~-g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM-ASD-Y-DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH-TTT-C-SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHH-HHC-C-CeEEEEeCCCCcCh
Confidence 5669999999999999999988 322 2 45667776554443
No 477
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.89 E-value=0.053 Score=51.92 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999864
No 478
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.83 E-value=0.097 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
....+|+|+|.+|+|||||+..++...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998775
No 479
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.81 E-value=0.35 Score=45.26 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCC-ceEEEEEeCChhhHHHHHHHHHHHhCCCCCC-----------------
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDF-DLVIWVVVSKDLQLKRIQDCIARKIGLFSRS----------------- 67 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 67 (656)
+.+.|.|+.|+||||+...+.-+........ ...+.+......-...+...+...++.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 5789999999999987655543320111222 2233333333334445555555544322100
Q ss_pred -CCcccHHHHHHHHHHhhCCccEEEEEeCCcCc
Q 037310 68 -WNSKSLLEKAEDIFKVMKRKKFVLLLDDIWEP 99 (656)
Q Consensus 68 -~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 99 (656)
..-...+.....+...+.+ --++|+|+++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCccC
Confidence 1112445555555544433 347999999864
No 480
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.80 E-value=0.054 Score=54.13 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|.|+.|+|||||.+.++.-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 478999999999999999998754
No 481
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.79 E-value=0.13 Score=47.39 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=30.0
Q ss_pred EEEEE-cCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhHH
Q 037310 7 ILGLY-GMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQLK 51 (656)
Q Consensus 7 vv~i~-G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 51 (656)
+|+|. +.||+||||+|..++... ... + .+.-++.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l-a~~-g--~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL-ALQ-G--ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HTT-S--CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH-Hhc-C--CEEEEECCCCCCHH
Confidence 56664 799999999999999887 322 2 67788876655443
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.78 E-value=0.062 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.069 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-.+++|+|++|+|||||++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999864
No 483
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.78 E-value=0.051 Score=57.17 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.-|.|+|++|+|||+||+.+++..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 357899999999999999999976
No 484
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.75 E-value=0.073 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+|+|.|+.|+||||+|+.++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999986
No 485
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.73 E-value=0.054 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 5 VGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 5 ~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
-.+|+|.|+.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998875
No 486
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.72 E-value=0.13 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
..|+|.|+.|+||||+++.+++..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.70 E-value=0.062 Score=57.06 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+...+|.++|.+|.||||+|+.+++..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998875
No 488
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.67 E-value=0.064 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+.+|+|+.|.|||||+..++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.65 E-value=0.04 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+|++|+||||+|..++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 490
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.63 E-value=0.082 Score=53.67 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCChhhH
Q 037310 3 EEVGILGLYG-MGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSKDLQL 50 (656)
Q Consensus 3 ~~~~vv~i~G-~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (656)
...++|+|+| .||+||||+|..++... .. .-..++.+++....+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L-a~--~g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAH-AN--MGKKVFYLNIEQCGTT 186 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHH-HH--HTCCEEEEECCTTCCH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHH-Hh--CCCCEEEEECCCCCCH
Confidence 4578999986 99999999999998876 21 2235777877644433
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.59 E-value=0.061 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 492
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.56 E-value=0.073 Score=49.47 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
...+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999999986
No 493
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.55 E-value=0.049 Score=51.69 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcccCCCCCCceEEEEEeCC
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKFFDTPNDFDLVIWVVVSK 46 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 46 (656)
.++.|.|.+|+|||++|.+++.+. . ...-..++|++...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~-~-~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-H-HhcCCCceeecccC
Confidence 478999999999999999877542 0 12223567777654
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.54 E-value=0.058 Score=52.42 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.+++|+|+.|.|||||++.++.-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999998764
No 495
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.54 E-value=0.55 Score=48.53 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcHHHHH-HHHhhcccCCCCCCce-EEEEEeCC-hhhHHHHHHHHHHHhCCCC-----CCCCcccHH----
Q 037310 7 ILGLYGMGGVGKTTLL-TLINNKFFDTPNDFDL-VIWVVVSK-DLQLKRIQDCIARKIGLFS-----RSWNSKSLL---- 74 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA-~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~---- 74 (656)
.++|.|..|+|||+|| ..+++.. +-+. ++++-+++ .....++.+.+...-.... .........
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 4689999999999997 4666643 3343 46776664 4566677777655421110 111111111
Q ss_pred -----HHHHHHHHhhCCccEEEEEeCC
Q 037310 75 -----EKAEDIFKVMKRKKFVLLLDDI 96 (656)
Q Consensus 75 -----~~~~~l~~~l~~~~~LlVlDdv 96 (656)
...+.++. .++.+|+++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 11222332 689999999998
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.076 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 037310 6 GILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 6 ~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
..|+|+|.+|+|||||...++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.53 E-value=0.076 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 037310 4 EVGILGLYGMGGVGKTTLLTLINNK 28 (656)
Q Consensus 4 ~~~vv~i~G~~GiGKTtLA~~~~~~ 28 (656)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999876
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.48 E-value=0.077 Score=49.07 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 3 EEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 3 ~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
.....|.|+|.+|+|||||+..++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998865
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.43 E-value=0.09 Score=49.11 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 037310 2 EEEVGILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 2 ~~~~~vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
+.....|+|+|.+|+|||||+..++...
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998764
No 500
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.38 E-value=0.048 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 037310 7 ILGLYGMGGVGKTTLLTLINNKF 29 (656)
Q Consensus 7 vv~i~G~~GiGKTtLA~~~~~~~ 29 (656)
-+.|+|++|+|||++|+.+++..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47889999999999999999876
Done!