BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037311
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis
          Thaliana
          Length = 176

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLXXXXXX 63
          S    KYDVF+SFRG D R NF S LY  L R++I+TF DD +L  G   S  L      
Sbjct: 3  SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62

Query: 64 XXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                  SE+YA+S WCLDE   I++ +K
Sbjct: 63 SRFAVVVVSENYAASSWCLDELVTIMDFEK 92


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 10  KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFI-DDQLNRGDEISESLXXXXXXXXXXX 68
           +Y+VF+SFRG D R+ FT  LY +L R  I TF  DD+L +G EI  +L           
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94

Query: 69  XXFSEDYASSRWCLDEFAEIL 89
              S  YA S+WCL E AEI+
Sbjct: 95  PIISSGYADSKWCLMELAEIV 115


>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
 pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
 pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
          Length = 816

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 13  VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43
           VF  FR ED R    + +Y+ LAR    + I
Sbjct: 97  VFPPFRAEDYRQEVHAQVYACLARNQFGSII 127


>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
 pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
          Length = 394

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43
          VF  FR ED R    + +Y+ LAR    + I
Sbjct: 68 VFPPFRAEDYRQEVHAQVYACLARNQFGSII 98


>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
          Length = 388

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43
          VF  FR ED R    + +Y+ LAR    + I
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSII 92


>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
 pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
          Length = 391

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43
          VF  FR ED R    + +Y+ LAR    + I
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSII 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,236,158
Number of Sequences: 62578
Number of extensions: 60138
Number of successful extensions: 152
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)