BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037311
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 64/93 (68%)
Query: 1 MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKA 60
MAS S N+ +YDVF SFRGED+R+NF SHL + I TF DD + R I L A
Sbjct: 1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60
Query: 61 IKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
I+ S ISV++FSE+YASS WCLDE EI++CK+
Sbjct: 61 IRESKISVVLFSENYASSSWCLDELIEIMKCKE 93
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 11 YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAIKASAISVI 69
YDVF+SFRGED R FTSHLY L + I+TF DD+ L G I L KAI+ S +++
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71
Query: 70 IFSEDYASSRWCLDEFAEILECK 92
+FSE+YA+SRWCL+E +I+ECK
Sbjct: 72 VFSENYATSRWCLNELVKIMECK 94
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKAS 64
S +++YDVF SFRGED+RD+F SHL L + I TFIDD++ R I L+ AIK S
Sbjct: 6 SSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIKES 64
Query: 65 AISVIIFSEDYASSRWCLDEFAEILEC 91
I+++IFS++YASS WCL+E EI +C
Sbjct: 65 RIAIVIFSKNYASSTWCLNELVEIHKC 91
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
VF++FRG+D+R+ F S L A+ NI FID G ++ V+ I+ S ++V+IFS
Sbjct: 16 VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFS 74
Query: 73 EDYASSRWCLDEFAEILEC 91
+DY SS WCLDE AEI +C
Sbjct: 75 KDYTSSEWCLDELAEIKDC 93
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
VF++FRG+D+R F S L AL ++ I FID+Q RG + SL I S I+++IFS
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82
Query: 73 EDYASSRWCLDEFAEILE 90
E Y S WC+DE +I E
Sbjct: 83 EGYCESHWCMDELVKIKE 100
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
VF+ FRG D+R +F S L AL NI FID+ G E++ L + I+ S ++++IFS
Sbjct: 17 VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMANLLTR-IEESELALVIFS 75
Query: 73 EDYASSRWCLDEFAEILECK 92
D+ S CL+E A+I E K
Sbjct: 76 VDFTRSHRCLNELAKIKERK 95
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
+Y VF++FRG+++R++F L A+ + I F D+ RG ++ L + I+ S ++V
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415
Query: 70 IFSEDYASSRWCLDEFAEILE 90
IFSE Y S WCLDE ++ E
Sbjct: 416 IFSERYTESCWCLDELVKMKE 436
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana
GN=WRKY52 PE=2 SV=3
Length = 1288
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 20 EDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSR 79
E++R +F SHL AL R+ I + D ES K I+ + +SV++ + S
Sbjct: 17 EEVRYSFVSHLSEALRRKGINNVVVDVDIDDLLFKESQAK-IEKAGVSVMVLPGNCDPSE 75
Query: 80 WCLDEFAEILECKK 93
LD+FA++LEC++
Sbjct: 76 VWLDKFAKVLECQR 89
>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis
thaliana GN=PP2A7 PE=4 SV=1
Length = 332
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 20 EDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSE 73
ED+ + L L +NI FID++ RG + ++L K I+ S IS+ IFSE
Sbjct: 51 EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGL-KNLFKRIQDSKISLAIFSE 103
>sp|P55546|Y4LF_RHISN Uncharacterized protein y4lF OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02690 PE=4 SV=1
Length = 323
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 13 VFVSFRGED--IRDNFTSHLYSALARQN-IQTFIDDQLNRGDEISESLVKAIKASAISVI 69
VF S+ D +RD L S L RQ I+T+ D ++ G++I ++ I I ++
Sbjct: 4 VFFSYSHADEGLRDQLEKQL-SMLKRQGVIETWHDRRIGAGEDIHRAIDDHINTDDIILL 62
Query: 70 IFSEDYASSRWCLD 83
+ S D+ +S +C D
Sbjct: 63 LVSADFIASDYCYD 76
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 28 SHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWC 81
+H YS R +I+ FID QL E+S + A S+ + ++ A+S +C
Sbjct: 404 AHCYSRWGRSDIKCFIDGQLAETIELSWVVTSATNWDRCSIGVSADGTANSAFC 457
>sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens GN=TLR10 PE=1 SV=2
Length = 811
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 6 RNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFI---DDQLNRGDEISESLVKAIK 62
+ N ++ F+S+ D + L L +++ I + + G ISE++V I+
Sbjct: 629 KRNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIE 687
Query: 63 ASAISVIIFSEDYASSRWCLDEF 85
S S+ + S ++ + WC EF
Sbjct: 688 KSYKSIFVLSPNFVQNEWCHYEF 710
>sp|A8G766|RECA_PROM2 Protein RecA OS=Prochlorococcus marinus (strain MIT 9215) GN=recA
PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 16 SFRGEDI---RDNFTSHLYSALARQN-IQTFIDDQLNRGDEISESLVKAIKASAISVI 69
S+ GE+I RDN L L +N +++ I ++L G E+S + +KA+ ++ S I
Sbjct: 299 SYEGENIGQGRDNTIIWLDQNLEIKNKVESMIKEKLTEGTEVSSNSMKALNSNPTSTI 356
>sp|P58727|TLR4_FELCA Toll-like receptor 4 OS=Felis catus GN=TLR4 PE=2 SV=1
Length = 833
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 4 FSRNNKKYDVFVSFRGED---IRDNFTSHLYSALARQNI----QTFIDDQLNRGDEISES 56
+SR YD FV + +D +R+ +L + + + FI + I E
Sbjct: 668 YSRGESTYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEG 727
Query: 57 LVKAIKASAISVIIFSEDYASSRWCLDEFA 86
K+ K +++ S+ + SRWC+ E+
Sbjct: 728 FHKSRKV----IVVVSQHFIQSRWCIFEYG 753
>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum
GN=aifB PE=3 SV=1
Length = 387
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 22 IRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSR 79
+ D FT+ + A+ ++N++ ++D++ DEI +L + ++ ++ I S++Y + +
Sbjct: 183 MNDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANL---LNQTSPNIQISSQNYTTEK 237
>sp|Q4A977|KITH_MYCHJ Thymidine kinase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934
/ NCTC 10110) GN=tdk PE=3 SV=1
Length = 184
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAI 61
SR+ K F++ ++IRD FT Y A+A IQ F ++ + ++I++ ++ I
Sbjct: 57 SRSGLKIPTFLARTTQEIRDLFTRDNYQAIAIDEIQFFDEEIVTFLEQIADKGIRVI 113
>sp|Q4A7B8|KITH_MYCH7 Thymidine kinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tdk
PE=3 SV=1
Length = 184
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAI 61
SR+ K F++ ++IRD FT Y A+A IQ F ++ + ++I++ ++ I
Sbjct: 57 SRSGLKIPTFLARTTQEIRDLFTRDNYQAIAIDEIQFFDEEIVTFLEQIADKGIRVI 113
>sp|Q5ZZT0|KITH_MYCH2 Thymidine kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=tdk
PE=3 SV=1
Length = 184
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAI 61
SR+ K F++ ++IRD FT Y A+A IQ F ++ + ++I++ ++ I
Sbjct: 57 SRSGLKIPTFLARTTQEIRDLFTRDNYQAIAIDEIQFFDEEIVTFLEQIADKGIRVI 113
>sp|C0Q0R4|NDPA_SALPC Nucleoid-associated protein YejK OS=Salmonella paratyphi C (strain
RKS4594) GN=yejK PE=3 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|P67714|NDPA_SALTY Nucleoid-associated protein YejK OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=yejK PE=3 SV=2
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|P67715|NDPA_SALTI Nucleoid-associated protein YejK OS=Salmonella typhi GN=yejK PE=3
SV=2
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B5BE10|NDPA_SALPK Nucleoid-associated protein YejK OS=Salmonella paratyphi A (strain
AKU_12601) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|A9N6F3|NDPA_SALPB Nucleoid-associated protein YejK OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|Q5PE22|NDPA_SALPA Nucleoid-associated protein YejK OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B4SYR2|NDPA_SALNS Nucleoid-associated protein YejK OS=Salmonella newport (strain
SL254) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B4TAQ0|NDPA_SALHS Nucleoid-associated protein YejK OS=Salmonella heidelberg (strain
SL476) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B5FNN2|NDPA_SALDC Nucleoid-associated protein YejK OS=Salmonella dublin (strain
CT_02021853) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|Q57MB2|NDPA_SALCH Nucleoid-associated protein YejK OS=Salmonella choleraesuis (strain
SC-B67) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B5EYS8|NDPA_SALA4 Nucleoid-associated protein SeAg_B2375 OS=Salmonella agona (strain
SL483) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|A2BTE1|RECA_PROMS Protein RecA OS=Prochlorococcus marinus (strain AS9601) GN=recA
PE=3 SV=1
Length = 365
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 16 SFRGEDI---RDNFTSHLYSALA-RQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
S+ GE+I RDN L L R +++ + ++L G E+S + +KA+ ++ + I
Sbjct: 299 SYEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTI 356
>sp|Q318I0|RECA_PROM9 Protein RecA OS=Prochlorococcus marinus (strain MIT 9312) GN=recA
PE=3 SV=1
Length = 365
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 16 SFRGEDI---RDNFTSHLYSALA-RQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
S+ GE+I RDN L L R +++ + ++L G E+S + +KA+ ++ + I
Sbjct: 299 SYEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTI 356
>sp|B4TPC8|NDPA_SALSV Nucleoid-associated protein YejK OS=Salmonella schwarzengrund
(strain CVM19633) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B5RC65|NDPA_SALG2 Nucleoid-associated protein YejK OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B5R196|NDPA_SALEP Nucleoid-associated protein YejK OS=Salmonella enteritidis PT4
(strain P125109) GN=yejK PE=3 SV=1
Length = 335
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 36 RQNIQTFIDDQLNRGDEIS-ESLVKAIKASAISVIIFSEDYASSRWCLDE 84
RQ + ++ ++QL G+EI ESL K + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKEL--SGVSEVSFSEFTAEKGYELEE 270
>sp|B0SMC0|LPXK_LEPBP Tetraacyldisaccharide 4'-kinase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=lpxK PE=3 SV=1
Length = 374
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 4 FSRNNKKYDVFVSFRGED---------IRDNFTSHLYSALARQNIQTFIDDQLNRGDEIS 54
F NKKY + + RG +RD + HLY ++ + F D Q+ G
Sbjct: 60 FKAKNKKYAITILSRGYKAKLSKVGAILRDGLSPHLYGDEPSEHKELFPDVQVIIGKNRK 119
Query: 55 ESLVK 59
ES +K
Sbjct: 120 ESFLK 124
>sp|B0SDY8|LPXK_LEPBA Tetraacyldisaccharide 4'-kinase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=lpxK PE=3 SV=1
Length = 374
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 4 FSRNNKKYDVFVSFRGED---------IRDNFTSHLYSALARQNIQTFIDDQLNRGDEIS 54
F NKKY + + RG +RD + HLY ++ + F D Q+ G
Sbjct: 60 FKAKNKKYAITILSRGYKAKLSKVGAILRDGLSPHLYGDEPSEHKELFPDVQVIIGKNRK 119
Query: 55 ESLVK 59
ES +K
Sbjct: 120 ESFLK 124
>sp|Q65IA6|FTHS_BACLD Formate--tetrahydrofolate ligase OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=fhs PE=3 SV=1
Length = 559
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 20 EDIRDNFTSHLYSALARQN-IQTFIDDQLNRGDEISESLVKAIKASAISV 68
EDI +FT +++ A N + FID+ +++G+E++ + K + A+ +
Sbjct: 123 EDINLHFTGDMHAITAANNALAAFIDNHIHQGNELNIDIRKIVWKRALDL 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,367,752
Number of Sequences: 539616
Number of extensions: 946012
Number of successful extensions: 3191
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3163
Number of HSP's gapped (non-prelim): 47
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)