Query 037311
Match_columns 93
No_of_seqs 135 out of 1053
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 3.9E-34 1.3E-38 187.7 3.4 88 5-92 3-91 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2E-33 6.8E-38 187.7 6.0 89 4-92 29-118 (204)
3 3h16_A TIR protein; bacteria T 100.0 4.6E-30 1.6E-34 164.8 2.3 86 6-92 16-102 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 1.4E-28 4.7E-33 157.2 -1.0 87 4-92 4-93 (146)
5 1t3g_A X-linked interleukin-1 99.9 1E-26 3.4E-31 150.3 5.3 83 9-91 1-96 (159)
6 2js7_A Myeloid differentiation 99.9 3E-27 1E-31 152.9 2.6 87 4-92 10-100 (160)
7 1fyx_A TOLL-like receptor 2; b 99.9 2E-27 6.8E-32 152.0 1.3 82 7-90 2-87 (149)
8 2j67_A TOLL like receptor 10; 99.9 6.5E-27 2.2E-31 153.6 3.2 85 5-91 30-118 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 6.2E-21 2.1E-25 146.4 6.9 84 6-91 666-756 (844)
10 1eiw_A Hypothetical protein MT 98.7 8.6E-09 2.9E-13 62.7 3.6 65 9-92 3-67 (111)
11 3hyn_A Putative signal transdu 97.7 0.00026 8.9E-09 46.4 8.2 72 18-91 27-108 (189)
12 2f62_A Nucleoside 2-deoxyribos 96.2 0.12 4.1E-06 32.8 10.4 69 24-92 26-98 (161)
13 2khz_A C-MYC-responsive protei 93.7 0.76 2.6E-05 28.9 9.0 81 8-92 9-103 (165)
14 4fyk_A Deoxyribonucleoside 5'- 92.7 1.1 3.8E-05 28.2 8.1 77 12-92 4-94 (152)
15 3ehd_A Uncharacterized conserv 92.1 1.4 5E-05 27.8 8.8 68 24-92 19-97 (162)
16 1s2d_A Purine trans deoxyribos 87.4 3.9 0.00013 25.8 8.2 78 12-92 9-109 (167)
17 2yvq_A Carbamoyl-phosphate syn 83.6 4.2 0.00014 24.8 5.9 61 13-75 27-106 (143)
18 1byr_A Protein (endonuclease); 79.4 5.2 0.00018 23.8 5.2 38 25-63 14-52 (155)
19 1f8y_A Nucleoside 2-deoxyribos 73.1 12 0.0004 23.3 5.7 67 24-91 18-105 (157)
20 4g84_A Histidine--tRNA ligase, 65.8 33 0.0011 24.3 7.7 60 7-69 363-423 (464)
21 1sc3_B Interleukin-1 beta conv 65.3 1.8 6.1E-05 24.5 0.6 26 14-39 21-46 (88)
22 3lc0_A Histidyl-tRNA synthetas 65.2 29 0.00098 25.1 7.1 61 9-73 360-420 (456)
23 1wu7_A Histidyl-tRNA synthetas 64.5 12 0.00042 26.5 5.0 57 10-70 332-389 (434)
24 4g85_A Histidine-tRNA ligase, 64.3 39 0.0013 24.6 7.9 61 7-70 416-477 (517)
25 3net_A Histidyl-tRNA synthetas 64.1 22 0.00076 25.6 6.3 63 8-74 369-431 (465)
26 2ql9_B Caspase-7; cysteine pro 64.1 1.4 4.8E-05 25.3 -0.0 32 7-38 7-47 (97)
27 1qtn_B Caspase-8; apoptosis, d 63.4 1.2 4.2E-05 25.5 -0.4 33 6-38 8-49 (95)
28 3pid_A UDP-glucose 6-dehydroge 62.8 6.1 0.00021 28.6 3.1 50 20-69 347-401 (432)
29 2i4l_A Proline-tRNA ligase; al 61.9 11 0.00038 27.2 4.4 41 10-50 365-408 (458)
30 2dko_B Caspase-3; low barrier 60.5 1.8 6.1E-05 25.2 -0.0 32 7-38 13-53 (103)
31 3ojo_A CAP5O; rossmann fold, c 60.2 9.4 0.00032 27.6 3.7 64 16-80 324-392 (431)
32 1pyo_B Caspase-2; apoptosis, c 60.1 1.8 6.2E-05 25.2 -0.0 30 9-38 13-51 (105)
33 1v95_A Nuclear receptor coacti 59.4 27 0.00092 21.2 8.1 46 24-70 21-67 (130)
34 1dlj_A UDP-glucose dehydrogena 58.6 14 0.00048 26.1 4.4 54 16-69 318-379 (402)
35 4a7p_A UDP-glucose dehydrogena 58.5 6.3 0.00022 28.6 2.6 65 16-80 331-406 (446)
36 1bax_A M-PMV MA, M-PMV matrix 58.4 6.4 0.00022 22.8 2.1 18 24-41 9-26 (94)
37 1evl_A Threonyl-tRNA synthetas 58.1 45 0.0015 23.3 7.2 59 9-71 297-355 (401)
38 3ikl_A DNA polymerase subunit 57.2 54 0.0019 24.0 7.9 65 8-74 348-414 (459)
39 1htt_A Histidyl-tRNA synthetas 57.1 16 0.00054 25.7 4.4 57 9-70 326-386 (423)
40 3g79_A NDP-N-acetyl-D-galactos 57.1 6.1 0.00021 29.0 2.3 56 16-71 362-422 (478)
41 3hjn_A DTMP kinase, thymidylat 55.5 31 0.001 21.7 5.3 47 14-61 2-50 (197)
42 2jug_A TUBC protein; docking d 55.3 10 0.00035 20.6 2.6 36 28-63 8-47 (78)
43 1nj1_A PROR, proline-tRNA synt 54.3 15 0.00051 27.0 4.0 43 9-51 313-360 (501)
44 2xzd_B Caspase-3; hydrolase-pr 53.6 3 0.0001 24.9 0.2 30 9-38 14-52 (118)
45 4e51_A Histidine--tRNA ligase; 51.9 43 0.0015 24.2 6.1 63 9-72 353-416 (467)
46 2gzs_A IROE protein; enterobac 51.3 23 0.00079 23.2 4.3 36 10-45 196-241 (278)
47 3rjm_B Caspase-2; caspase-2, c 50.9 3 0.0001 24.9 -0.1 32 7-38 12-52 (117)
48 2lpy_A Matrix protein P10; GAG 50.3 9 0.00031 23.2 1.9 20 24-43 8-27 (124)
49 1qe0_A Histidyl-tRNA synthetas 49.3 28 0.00097 24.3 4.7 60 9-72 328-387 (420)
50 4f21_A Carboxylesterase/phosph 48.6 44 0.0015 21.6 5.3 37 9-45 182-220 (246)
51 2fzv_A Putative arsenical resi 47.9 62 0.0021 21.9 7.1 53 25-78 76-137 (279)
52 3sm9_A Mglur3, metabotropic gl 46.2 29 0.00098 24.8 4.4 53 13-65 188-243 (479)
53 2e4u_A Metabotropic glutamate 45.4 63 0.0022 23.3 6.2 36 13-48 189-224 (555)
54 3ks9_A Mglur1, metabotropic gl 44.8 40 0.0014 24.2 5.0 51 13-63 200-252 (496)
55 3kbq_A Protein TA0487; structu 44.6 54 0.0019 20.6 5.1 45 25-70 23-69 (172)
56 3pzy_A MOG; ssgcid, seattle st 42.5 39 0.0013 20.9 4.1 45 25-69 27-72 (164)
57 1jdp_A NPR-C, atrial natriuret 42.2 81 0.0028 21.7 6.9 57 13-70 157-218 (441)
58 2q62_A ARSH; alpha/beta, flavo 41.6 73 0.0025 20.9 8.3 53 25-78 52-112 (247)
59 2j3l_A Prolyl-tRNA synthetase; 40.6 91 0.0031 22.9 6.4 61 10-73 470-532 (572)
60 3vtf_A UDP-glucose 6-dehydroge 39.5 31 0.0011 25.1 3.7 52 20-71 348-408 (444)
61 2hfv_A Hypothetical protein RP 39.1 30 0.001 20.0 2.9 32 12-45 22-53 (97)
62 1nyr_A Threonyl-tRNA synthetas 39.1 31 0.0011 25.9 3.8 58 10-70 545-603 (645)
63 4h0c_A Phospholipase/carboxyle 38.6 70 0.0024 19.9 5.1 37 9-45 150-188 (210)
64 2q3e_A UDP-glucose 6-dehydroge 37.4 23 0.00078 25.5 2.7 57 16-72 338-417 (467)
65 1p9l_A Dihydrodipicolinate red 37.3 88 0.003 20.6 7.3 74 10-89 45-119 (245)
66 2qm0_A BES; alpha-beta structu 36.6 83 0.0029 20.2 6.1 54 8-61 209-269 (275)
67 1e2b_A Enzyme IIB-cellobiose; 36.6 55 0.0019 18.6 3.9 43 25-76 18-61 (106)
68 2is8_A Molybdopterin biosynthe 36.1 58 0.002 19.9 4.2 43 25-68 21-67 (164)
69 3h5l_A Putative branched-chain 35.9 73 0.0025 21.7 5.1 54 12-66 166-220 (419)
70 1ati_A Glycyl-tRNA synthetase; 35.2 1E+02 0.0034 22.6 5.9 59 10-72 398-459 (505)
71 3l4e_A Uncharacterized peptida 35.1 87 0.003 19.9 6.6 68 11-85 29-97 (206)
72 4hvc_A Bifunctional glutamate/ 33.7 46 0.0016 24.7 3.9 32 24-55 331-364 (519)
73 3ftb_A Histidinol-phosphate am 33.5 86 0.0029 20.6 5.0 56 33-90 114-171 (361)
74 2fz5_A Flavodoxin; alpha/beta 33.4 67 0.0023 18.1 5.7 45 24-78 14-60 (137)
75 4fhz_A Phospholipase/carboxyle 33.4 1E+02 0.0036 20.3 5.4 37 9-45 204-242 (285)
76 3czx_A Putative N-acetylmuramo 33.0 90 0.0031 19.5 5.5 45 25-70 32-77 (182)
77 3hsi_A Phosphatidylserine synt 32.8 1.1E+02 0.0037 22.1 5.7 41 50-90 256-296 (458)
78 3gg2_A Sugar dehydrogenase, UD 32.3 20 0.00067 25.9 1.7 66 15-80 326-403 (450)
79 2a1i_A DNA excision repair pro 32.3 76 0.0026 19.6 4.1 73 12-92 57-131 (146)
80 1y5e_A Molybdenum cofactor bio 32.1 64 0.0022 19.8 3.9 44 25-69 31-78 (169)
81 1ydg_A Trp repressor binding p 31.7 30 0.001 21.5 2.3 54 24-78 21-92 (211)
82 1mv8_A GMD, GDP-mannose 6-dehy 31.7 21 0.00073 25.3 1.8 56 16-71 322-398 (436)
83 3hly_A Flavodoxin-like domain; 31.7 85 0.0029 18.8 5.9 51 24-78 15-65 (161)
84 1qf6_A THRRS, threonyl-tRNA sy 31.1 1.7E+02 0.0058 22.0 7.0 61 10-74 539-599 (642)
85 2zt5_A Glycyl-tRNA synthetase; 31.1 1.8E+02 0.0061 22.3 7.8 60 10-72 559-619 (693)
86 1mkz_A Molybdenum cofactor bio 30.9 95 0.0033 19.1 4.8 43 25-68 28-74 (172)
87 4h3d_A 3-dehydroquinate dehydr 30.8 53 0.0018 21.8 3.5 60 30-90 104-163 (258)
88 3uh0_A Threonyl-tRNA synthetas 30.7 1E+02 0.0034 22.3 5.2 50 10-63 345-411 (460)
89 4ggj_A Mitochondrial cardiolip 30.0 1E+02 0.0035 19.2 5.8 47 28-75 49-96 (196)
90 1h4v_B Histidyl-tRNA synthetas 29.4 1.4E+02 0.0049 20.7 6.4 59 9-73 327-386 (421)
91 3rpe_A MDAB, modulator of drug 29.4 1.2E+02 0.004 19.6 6.6 58 25-84 47-104 (218)
92 1vm6_A DHPR, dihydrodipicolina 29.2 1.3E+02 0.0043 19.9 5.6 70 10-88 53-123 (228)
93 2pjk_A 178AA long hypothetical 29.1 1.1E+02 0.0036 19.1 4.6 45 24-69 39-87 (178)
94 3qy9_A DHPR, dihydrodipicolina 28.9 1.2E+02 0.0043 19.8 6.0 68 10-88 54-122 (243)
95 2o3j_A UDP-glucose 6-dehydroge 28.7 35 0.0012 24.7 2.5 66 15-80 343-430 (481)
96 3en0_A Cyanophycinase; serine 28.6 1.4E+02 0.0047 20.3 5.7 54 13-69 60-116 (291)
97 3gff_A IROE-like serine hydrol 28.6 1E+02 0.0034 21.0 4.7 54 9-62 193-260 (331)
98 1egw_A MADS box transcription 28.4 11 0.00036 20.9 -0.3 30 61-90 37-66 (77)
99 3h6g_A Glutamate receptor, ion 27.8 1.1E+02 0.0037 20.6 4.8 40 25-65 152-191 (395)
100 1dqz_A 85C, protein (antigen 8 27.7 77 0.0026 20.2 3.9 35 11-45 201-252 (280)
101 1f4p_A Flavodoxin; electron tr 27.0 95 0.0032 17.8 4.2 20 24-43 15-34 (147)
102 1g5h_A Mitochondrial DNA polym 26.5 1.4E+02 0.0048 21.5 5.3 50 11-62 339-392 (454)
103 4dzz_A Plasmid partitioning pr 25.8 1.1E+02 0.0039 18.3 6.1 40 46-89 82-121 (206)
104 3ijp_A DHPR, dihydrodipicolina 25.6 1.6E+02 0.0055 20.0 6.0 69 10-87 88-157 (288)
105 2y0c_A BCEC, UDP-glucose dehyd 25.6 35 0.0012 24.7 2.0 30 16-45 337-368 (478)
106 1sqs_A Conserved hypothetical 25.5 1.3E+02 0.0046 19.1 5.8 52 25-78 19-93 (242)
107 3fni_A Putative diflavin flavo 25.4 1.1E+02 0.0039 18.2 5.3 52 24-78 19-70 (159)
108 1tk9_A Phosphoheptose isomeras 25.3 82 0.0028 19.0 3.5 51 13-74 115-165 (188)
109 1h1j_S THO1 protein; SAP domai 24.9 37 0.0013 17.1 1.5 33 27-64 10-42 (51)
110 2yan_A Glutaredoxin-3; oxidore 24.6 43 0.0015 18.4 1.9 27 53-81 6-32 (105)
111 3sg0_A Extracellular ligand-bi 24.5 1.3E+02 0.0043 19.9 4.6 17 26-42 175-191 (386)
112 2oe3_A Thioredoxin-3; electron 24.3 67 0.0023 17.7 2.8 18 55-72 21-38 (114)
113 3a32_A Probable threonyl-tRNA 24.3 1.2E+02 0.0041 21.8 4.6 49 10-61 338-392 (471)
114 3re1_A Uroporphyrinogen-III sy 24.2 74 0.0025 20.8 3.3 51 25-76 24-78 (269)
115 3rfq_A Pterin-4-alpha-carbinol 24.2 1.4E+02 0.0048 18.8 4.5 45 24-69 48-95 (185)
116 3p57_A Myocyte-specific enhanc 24.1 17 0.00057 20.8 0.1 31 60-90 36-66 (90)
117 2au3_A DNA primase; zinc ribbo 24.0 1.5E+02 0.0052 20.8 5.1 46 11-57 288-333 (407)
118 2yva_A DNAA initiator-associat 24.0 88 0.003 19.0 3.5 28 13-43 114-141 (196)
119 3n0x_A Possible substrate bind 24.0 1.2E+02 0.0039 20.3 4.3 53 12-65 143-196 (374)
120 2h1v_A Ferrochelatase; rossman 23.9 1.7E+02 0.0059 19.8 7.1 64 25-90 62-134 (310)
121 1sfr_A Antigen 85-A; alpha/bet 23.8 98 0.0034 20.1 3.9 35 11-45 206-257 (304)
122 3ju3_A Probable 2-oxoacid ferr 23.4 1.1E+02 0.0037 17.6 3.6 56 14-75 18-75 (118)
123 3o21_A Glutamate receptor 3; p 23.4 1.8E+02 0.0061 19.7 7.0 51 13-65 133-185 (389)
124 2g2c_A Putative molybdenum cof 23.2 1.1E+02 0.0036 18.7 3.7 43 26-69 26-75 (167)
125 1r88_A MPT51/MPB51 antigen; AL 23.2 1.5E+02 0.0053 18.9 5.6 35 10-44 198-246 (280)
126 2hjv_A ATP-dependent RNA helic 22.9 1.1E+02 0.0037 18.0 3.7 46 25-72 46-92 (163)
127 3ial_A Prolyl-tRNA synthetase; 22.7 32 0.0011 25.5 1.3 32 24-55 322-356 (518)
128 1jeo_A MJ1247, hypothetical pr 22.5 1.1E+02 0.0037 18.3 3.7 49 13-73 87-135 (180)
129 2h54_A Caspase-1; allosteric s 22.4 1.5E+02 0.0051 18.5 4.9 49 27-76 67-121 (178)
130 1wcw_A Uroporphyrinogen III sy 22.4 1.1E+02 0.0038 19.6 3.9 46 29-74 145-193 (261)
131 3bij_A Uncharacterized protein 22.3 1.8E+02 0.0061 19.3 5.5 47 28-74 34-84 (285)
132 3ox4_A Alcohol dehydrogenase 2 22.2 2E+02 0.0069 19.9 6.0 45 26-70 47-95 (383)
133 2xhz_A KDSD, YRBH, arabinose 5 22.2 1E+02 0.0035 18.5 3.5 49 13-72 101-149 (183)
134 3kg2_A Glutamate receptor 2; I 22.2 1.3E+02 0.0045 22.5 4.6 32 13-45 124-155 (823)
135 1zrj_A E1B-55KDA-associated pr 22.0 46 0.0016 16.7 1.5 15 27-41 15-29 (50)
136 1jr2_A Uroporphyrinogen-III sy 21.9 1.1E+02 0.0037 20.1 3.8 47 29-75 171-221 (286)
137 2pp6_A Gifsy-2 prophage ATP-bi 21.9 47 0.0016 19.4 1.7 22 56-77 43-64 (102)
138 1x92_A APC5045, phosphoheptose 21.7 1E+02 0.0036 18.8 3.5 54 13-74 118-171 (199)
139 1tuo_A Putative phosphomannomu 21.6 97 0.0033 22.2 3.7 49 12-64 50-98 (464)
140 1ykg_A SIR-FP, sulfite reducta 21.6 1.1E+02 0.0037 18.3 3.5 18 24-41 24-41 (167)
141 1di6_A MOGA, molybdenum cofact 21.5 63 0.0022 20.6 2.5 43 26-68 24-71 (195)
142 3f6r_A Flavodoxin; FMN binding 21.3 1.3E+02 0.0044 17.3 5.0 21 24-44 16-36 (148)
143 2zki_A 199AA long hypothetical 21.3 1.2E+02 0.004 18.4 3.7 52 24-78 18-84 (199)
144 2xbl_A Phosphoheptose isomeras 21.1 1.1E+02 0.0038 18.5 3.5 28 13-43 121-148 (198)
145 3hyn_A Putative signal transdu 21.0 1.8E+02 0.006 18.8 4.9 52 25-76 68-120 (189)
146 1gcy_A Glucan 1,4-alpha-maltot 20.9 1.3E+02 0.0044 21.8 4.3 35 7-45 74-113 (527)
147 3t5x_B 26S proteasome complex 20.9 77 0.0026 17.2 2.3 19 22-40 48-66 (70)
148 4edg_A DNA primase; catalytic 20.9 1.8E+02 0.0061 20.1 4.8 45 12-57 197-241 (329)
149 2ql9_A Caspase-7; cysteine pro 20.6 1.6E+02 0.0056 18.4 4.2 47 27-74 71-122 (173)
150 4fhd_A Spore photoproduct lyas 20.5 1.3E+02 0.0045 21.3 4.1 23 33-55 248-271 (368)
151 2amj_A Modulator of drug activ 20.5 1.7E+02 0.0057 18.3 7.4 56 25-83 34-90 (204)
152 3p45_A Caspase-6; protease, hu 20.4 1.7E+02 0.0059 18.4 4.7 47 27-74 71-122 (179)
153 2vzf_A NADH-dependent FMN redu 20.2 1.6E+02 0.0055 18.0 8.0 54 24-78 19-83 (197)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-34 Score=187.73 Aligned_cols=88 Identities=48% Similarity=0.867 Sum_probs=68.5
Q ss_pred CCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHH
Q 037311 5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLD 83 (93)
Q Consensus 5 ~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~ 83 (93)
|+.+++|||||||+++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|+||+|++|+||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 44688999999999999988999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 037311 84 EFAEILECK 92 (93)
Q Consensus 84 El~~~~~~~ 92 (93)
||.++++|+
T Consensus 83 EL~~i~~~~ 91 (176)
T 3jrn_A 83 ELVTIMDFE 91 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999985
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.98 E-value=2e-33 Score=187.66 Aligned_cols=89 Identities=48% Similarity=0.778 Sum_probs=82.4
Q ss_pred CCCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311 4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCL 82 (93)
Q Consensus 4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 82 (93)
++++.++|||||||+++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|+||+|+.|+||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 357789999999999999988999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 037311 83 DEFAEILECK 92 (93)
Q Consensus 83 ~El~~~~~~~ 92 (93)
+||.++++|+
T Consensus 109 ~EL~~I~e~~ 118 (204)
T 3ozi_A 109 MELAEIVRRQ 118 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=4.6e-30 Score=164.78 Aligned_cols=86 Identities=22% Similarity=0.457 Sum_probs=80.7
Q ss_pred CCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHH
Q 037311 6 RNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDE 84 (93)
Q Consensus 6 ~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E 84 (93)
.+.++|||||||+++| ++.|+.+|+.+|+++|+++|+|+ ++.+|+.|.+.|.++|++|+++|+|+||+|+.|+||+.|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4568999999999999 45899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 037311 85 FAEILECK 92 (93)
Q Consensus 85 l~~~~~~~ 92 (93)
+..+++|.
T Consensus 95 l~~~~~~~ 102 (154)
T 3h16_A 95 LDGLFQLE 102 (154)
T ss_dssp HHHHTCCC
T ss_pred HHHHHHHH
Confidence 99999874
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.94 E-value=1.4e-28 Score=157.20 Aligned_cols=87 Identities=25% Similarity=0.415 Sum_probs=67.8
Q ss_pred CCCCCCcccEEEecccCcCChhHHHHHHHHHhc--CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHH
Q 037311 4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALAR--QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRW 80 (93)
Q Consensus 4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~--~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~w 80 (93)
|+..++.|||||||+++|+ .||.+|..+|++ .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|++|+|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 6678899999999999995 589999999998 599999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 037311 81 CLDEFAEILECK 92 (93)
Q Consensus 81 c~~El~~~~~~~ 92 (93)
|+.|+..|+++.
T Consensus 82 c~~El~~al~~~ 93 (146)
T 3ub2_A 82 CKYQMLQALTEA 93 (146)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 5
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=150.29 Aligned_cols=83 Identities=22% Similarity=0.428 Sum_probs=75.9
Q ss_pred CcccEEEecccCcC---------ChhHHHHHHH-HHh-cCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCC
Q 037311 9 KKYDVFVSFRGEDI---------RDNFTSHLYS-ALA-RQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYA 76 (93)
Q Consensus 9 ~~ydVFISy~~~D~---------~~~~~~~L~~-~L~-~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~ 76 (93)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3578888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -CcHHHHHHHHHHHhh
Q 037311 77 -SSRWCLDEFAEILEC 91 (93)
Q Consensus 77 -~S~wc~~El~~~~~~ 91 (93)
.|+||..|+..|+++
T Consensus 81 ~~S~wc~~El~~a~~~ 96 (159)
T 1t3g_A 81 VRRGWSIFELETRLRN 96 (159)
T ss_dssp HTTTTHHHHHSHHHHH
T ss_pred hcChHHHHHHHHHHHH
Confidence 999999999999876
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=3e-27 Score=152.92 Aligned_cols=87 Identities=17% Similarity=0.301 Sum_probs=80.4
Q ss_pred CCCCCCcccEEEecccCcCChhHHHHHHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHH-hCCEEEEEEcCCCCCcH
Q 037311 4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIK-ASAISVIIFSEDYASSR 79 (93)
Q Consensus 4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~-~s~~~i~v~S~~y~~S~ 79 (93)
.+..++.|||||||+++| +.||.+|..+|++. |+++|+++ |+.||+.+.++|.++|+ +|+++|+|+||+|++|.
T Consensus 10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~ 87 (160)
T 2js7_A 10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK 87 (160)
T ss_dssp TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence 345688999999999999 57999999999984 79999999 99999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 037311 80 WCLDEFAEILECK 92 (93)
Q Consensus 80 wc~~El~~~~~~~ 92 (93)
||+.|+..|+++.
T Consensus 88 wc~~El~~a~~~~ 100 (160)
T 2js7_A 88 ECDFQTKFALSLS 100 (160)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 7
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=2e-27 Score=152.04 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=77.1
Q ss_pred CCCcccEEEecccCcCChhHHHH-HHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311 7 NNKKYDVFVSFRGEDIRDNFTSH-LYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCL 82 (93)
Q Consensus 7 ~~~~ydVFISy~~~D~~~~~~~~-L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 82 (93)
.++.|||||||+++|. .||.+ |...|++. |+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4689999999999995 79986 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 037311 83 DEFAEILE 90 (93)
Q Consensus 83 ~El~~~~~ 90 (93)
.|+..|++
T Consensus 80 ~El~~a~~ 87 (149)
T 1fyx_A 80 YELDFSHF 87 (149)
T ss_dssp HHSCCSCC
T ss_pred HHHHHHHH
Confidence 99988774
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=6.5e-27 Score=153.64 Aligned_cols=85 Identities=24% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCCCCcccEEEecccCcCChhHHHH-HHHHHhc--CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHH
Q 037311 5 SRNNKKYDVFVSFRGEDIRDNFTSH-LYSALAR--QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRW 80 (93)
Q Consensus 5 ~~~~~~ydVFISy~~~D~~~~~~~~-L~~~L~~--~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~w 80 (93)
...++.|||||||+++|. .||.. |...|++ .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|+.|+|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 467789999999999994 79974 9999998 899999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 037311 81 CLDEFAEILEC 91 (93)
Q Consensus 81 c~~El~~~~~~ 91 (93)
|+.|+..|+++
T Consensus 108 c~~El~~a~~~ 118 (178)
T 2j67_A 108 CHYEFYFAHHN 118 (178)
T ss_dssp GGTHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=146.44 Aligned_cols=84 Identities=20% Similarity=0.416 Sum_probs=77.6
Q ss_pred CCCCcccEEEecccCcCChhHH-HHHHHHHhc-----CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 6 RNNKKYDVFVSFRGEDIRDNFT-SHLYSALAR-----QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 6 ~~~~~ydVFISy~~~D~~~~~~-~~L~~~L~~-----~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
..++.|||||||+++|. .|| ..|...|+. .|+++|+++ |+.||+.+.++|.++|++|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45789999999999995 687 779999985 589999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 037311 79 RWCLDEFAEILEC 91 (93)
Q Consensus 79 ~wc~~El~~~~~~ 91 (93)
+||..|+..|+.+
T Consensus 744 ~wc~~e~~~a~~~ 756 (844)
T 3j0a_A 744 GWCLEAFSYAQGR 756 (844)
T ss_dssp TSTTHHHHHHHSC
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998754
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.72 E-value=8.6e-09 Score=62.75 Aligned_cols=65 Identities=3% Similarity=-0.053 Sum_probs=51.4
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI 88 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 88 (93)
.+|.+||||+.+| -...|...|.+.|+... + +.|+.|+++|+++++....|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999998 24456666654455332 1 568999999999999999999999999999
Q ss_pred Hhhc
Q 037311 89 LECK 92 (93)
Q Consensus 89 ~~~~ 92 (93)
.+..
T Consensus 64 ~~~g 67 (111)
T 1eiw_A 64 RKSS 67 (111)
T ss_dssp TTTT
T ss_pred HHcC
Confidence 8754
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.71 E-value=0.00026 Score=46.37 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=53.3
Q ss_pred ccCcCChhHHHHHHHHHhcCCceEEeec-cCC-------C-CcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311 18 RGEDIRDNFTSHLYSALARQNIQTFIDD-QLN-------R-GDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI 88 (93)
Q Consensus 18 ~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~-------~-G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 88 (93)
+.+|. .....|..--....+--|.|- +.. . -..|.+.+.+.|+.|+.+|+++|++...+.|...|+..|
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 44553 355666665444455555554 442 2 245889999999999999999999999999999999999
Q ss_pred H-hh
Q 037311 89 L-EC 91 (93)
Q Consensus 89 ~-~~ 91 (93)
+ ++
T Consensus 105 i~~~ 108 (189)
T 3hyn_A 105 IGTK 108 (189)
T ss_dssp TTTT
T ss_pred HHhc
Confidence 9 54
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=96.16 E-value=0.12 Score=32.78 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhcCCceEEeec-cC-CCCcchHHHHHHHHHhCCEEEEEEcC--CCCCcHHHHHHHHHHHhhc
Q 037311 24 DNFTSHLYSALARQNIQTFIDD-QL-NRGDEISESLVKAIKASAISVIIFSE--DYASSRWCLDEFAEILECK 92 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~-~~-~~G~~~~~~i~~~i~~s~~~i~v~S~--~y~~S~wc~~El~~~~~~~ 92 (93)
..+...+.+.|++.|+.++.-. +- ..+..+.+.-.++|++|+++|++++| .--.++=...|+..|....
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 3688999999999999988754 22 12234444557899999999999997 4445666889998887644
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=93.71 E-value=0.76 Score=28.88 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCcccEEEecccC-cC-ChhHHHHHHHHHhcCCceEEeeccCC-----CCc-------chHHHHHHHHHhCCEEEEEEcC
Q 037311 8 NKKYDVFVSFRGE-DI-RDNFTSHLYSALARQNIQTFIDDQLN-----RGD-------EISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 8 ~~~ydVFISy~~~-D~-~~~~~~~L~~~L~~~gi~v~~d~~~~-----~G~-------~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
++...|||+=.-. +. .......+.+.|++.| .|..+.... .|. .+...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3445699984333 11 1224588889999999 776543221 221 123344578999999999997
Q ss_pred CCCCcHHHHHHHHHHHhhc
Q 037311 74 DYASSRWCLDEFAEILECK 92 (93)
Q Consensus 74 ~y~~S~wc~~El~~~~~~~ 92 (93)
-.+.=+..|+..|....
T Consensus 87 --~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 87 --QPSLGVGYELGRAVALG 103 (165)
T ss_dssp --SCCHHHHHHHHHHHHTC
T ss_pred --CCCCCHHHHHHHHHHCC
Confidence 56777999999887643
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=92.75 E-value=1.1 Score=28.15 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=50.7
Q ss_pred cEEEe--cccCcCChhHHHHHHHHHhcCCceEEeec----cC-CCC-------cchHHHHHHHHHhCCEEEEEEcCCCCC
Q 037311 12 DVFVS--FRGEDIRDNFTSHLYSALARQNIQTFIDD----QL-NRG-------DEISESLVKAIKASAISVIIFSEDYAS 77 (93)
Q Consensus 12 dVFIS--y~~~D~~~~~~~~L~~~L~~~gi~v~~d~----~~-~~G-------~~~~~~i~~~i~~s~~~i~v~S~~y~~ 77 (93)
.|||+ +.+-+....+..++.+.|++.| .|+-.. ++ ..| ..+.+.-.+.|++|+.+|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 45665 3332223357789999999999 665322 11 111 2255666778999999999998 56
Q ss_pred cHHHHHHHHHHHhhc
Q 037311 78 SRWCLDEFAEILECK 92 (93)
Q Consensus 78 S~wc~~El~~~~~~~ 92 (93)
|.=...|+..|....
T Consensus 80 d~Gt~~EiG~A~alg 94 (152)
T 4fyk_A 80 SLGVGYELGRAVALG 94 (152)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHcC
Confidence 777888998887654
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=92.08 E-value=1.4 Score=27.81 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcC--CceEEeec-cCC----CCcc----hHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHhhc
Q 037311 24 DNFTSHLYSALARQ--NIQTFIDD-QLN----RGDE----ISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECK 92 (93)
Q Consensus 24 ~~~~~~L~~~L~~~--gi~v~~d~-~~~----~G~~----~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~ 92 (93)
..+..++.++|+++ |+.++.-. +-. ++.. +.+.=.++|++|+++|+++. ....++.+..|+..|....
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 35778899999875 89888754 221 2222 44445567999999999995 4457888999999887654
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=87.42 E-value=3.9 Score=25.81 Aligned_cols=78 Identities=10% Similarity=0.160 Sum_probs=51.6
Q ss_pred cEEEe---cccCcCChhHHHHHHHHHhcC--CceEEeec--cC--------CCC--------cchHHHHHHHHHhCCEEE
Q 037311 12 DVFVS---FRGEDIRDNFTSHLYSALARQ--NIQTFIDD--QL--------NRG--------DEISESLVKAIKASAISV 68 (93)
Q Consensus 12 dVFIS---y~~~D~~~~~~~~L~~~L~~~--gi~v~~d~--~~--------~~G--------~~~~~~i~~~i~~s~~~i 68 (93)
.||+. |+..+ ..+..++.+.|++. |+.++.-. .. ..| ..+.+.=.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 36665 33322 35778999999999 88888654 22 111 123444556799999999
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhc
Q 037311 69 IIFSEDYASSRWCLDEFAEILECK 92 (93)
Q Consensus 69 ~v~S~~y~~S~wc~~El~~~~~~~ 92 (93)
+++.+.- .++=...|+..|....
T Consensus 87 A~ldg~~-~D~GTa~EiGyA~alg 109 (167)
T 1s2d_A 87 FLYDMDQ-LDDGSAFXIGFMRAMH 109 (167)
T ss_dssp EEEESSS-CCHHHHHHHHHHHHTT
T ss_pred EECCCCC-CCCCceeehhhHhhCC
Confidence 9998644 4566778888876543
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=83.56 E-value=4.2 Score=24.79 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=39.6
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeec-----------------cCCCC-c-chHHHHHHHHHhCCEEEEEEcC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-----------------QLNRG-D-EISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-----------------~~~~G-~-~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
||||....|. .-+..+...|.+.|++++--. ++..| + .-.++|.+.|++-.+-++|.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988764 344456678888888877211 11112 1 0003688889999988888888
Q ss_pred CC
Q 037311 74 DY 75 (93)
Q Consensus 74 ~y 75 (93)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 18
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=79.36 E-value=5.2 Score=23.83 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHh
Q 037311 25 NFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKA 63 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~ 63 (93)
.+...+.+.+.+..-.+++-. -+ +.+.+.+.+.++.++
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~r 52 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKKR 52 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHHC
Confidence 345566677776555666655 55 445566666666554
No 19
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=73.14 E-value=12 Score=23.28 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCCc----eEEeecc--C--------CC---C----cchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311 24 DNFTSHLYSALARQNI----QTFIDDQ--L--------NR---G----DEISESLVKAIKASAISVIIFSEDYASSRWCL 82 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi----~v~~d~~--~--------~~---G----~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 82 (93)
.....++.+.|+++|. .++.-.+ . .. + ..+.+.=.++|++|+++|+++...- .++=..
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 3577889999999885 6666441 1 11 1 1234445567999999999987432 456678
Q ss_pred HHHHHHHhh
Q 037311 83 DEFAEILEC 91 (93)
Q Consensus 83 ~El~~~~~~ 91 (93)
.|+..|.-.
T Consensus 97 ~EiGyA~A~ 105 (157)
T 1f8y_A 97 MELGYALSQ 105 (157)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 888877654
No 20
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=65.77 E-value=33 Score=24.32 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh-CCEEEE
Q 037311 7 NNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA-SAISVI 69 (93)
Q Consensus 7 ~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~-s~~~i~ 69 (93)
.+...||+|...+++. ...+..|...|++.||++-++. ..+..+...+..|-+. ...+|+
T Consensus 363 ~~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vi 423 (464)
T 4g84_A 363 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAI 423 (464)
T ss_dssp CSCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCEEEE
T ss_pred ccccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEE
Confidence 3456789998876654 3567789999999999997653 2334565566665443 444443
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=65.34 E-value=1.8 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=17.9
Q ss_pred EEecccCcCChhHHHHHHHHHhcCCc
Q 037311 14 FVSFRGEDIRDNFTSHLYSALARQNI 39 (93)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~gi 39 (93)
|+||++....-.|+..|.+.|++.+-
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~~ 46 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYAC 46 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHTT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhCC
Confidence 44555544456799999999986543
No 22
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=65.19 E-value=29 Score=25.11 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=39.7
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcC
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
...||+|-.-+++. ...+-.+...|++.|+++-++. . +..+...+..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~--~-~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIIL--D-KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECC--S-CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEec--C-CCCHHHHHHHHHHcCCCEEEEECC
Confidence 45788776555543 2456788899999999998764 2 234666666666654445555543
No 23
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=64.47 E-value=12 Score=26.52 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=36.5
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHH-hCCEEEEE
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIK-ASAISVII 70 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~i~v 70 (93)
.++|+|-.-+++. ...+..+.+.|++.|++|-+|. .+..+...+..+-. +...+|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEec---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 4889865544443 4678899999999999999886 12344445555433 34444443
No 24
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=64.30 E-value=39 Score=24.60 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh-CCEEEEE
Q 037311 7 NNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA-SAISVII 70 (93)
Q Consensus 7 ~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~-s~~~i~v 70 (93)
.....||+|..-+++. ...+..|...|++.||++-++. ..+..+...+..|-+. ...+|+|
T Consensus 416 ~~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 416 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CSCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEE
Confidence 3456789987755543 3567789999999999997753 2334566666666544 4444443
No 25
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=64.14 E-value=22 Score=25.62 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311 8 NKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED 74 (93)
Q Consensus 8 ~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 74 (93)
...+||+|-.-+++. ...+..+.+.|++.|++|-+|.. +..+...+..+-+.--..++++.++
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 345799976644443 35778999999999999998751 2345556666655444445555443
No 26
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=64.07 E-value=1.4 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCCcccEEEeccc---------CcCChhHHHHHHHHHhcCC
Q 037311 7 NNKKYDVFVSFRG---------EDIRDNFTSHLYSALARQN 38 (93)
Q Consensus 7 ~~~~ydVFISy~~---------~D~~~~~~~~L~~~L~~~g 38 (93)
-+..-|.+++|+. .+..-.|+..|.+.|++.|
T Consensus 7 iP~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 7 IPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3445566666653 3334579999999998754
No 27
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=63.39 E-value=1.2 Score=25.50 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=22.0
Q ss_pred CCCCcccEEEecccC---------cCChhHHHHHHHHHhcCC
Q 037311 6 RNNKKYDVFVSFRGE---------DIRDNFTSHLYSALARQN 38 (93)
Q Consensus 6 ~~~~~ydVFISy~~~---------D~~~~~~~~L~~~L~~~g 38 (93)
.-+..-|.+++|+.. +..-.|+..|.+.|++.|
T Consensus 8 ~iP~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 8 YIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CCCTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred ccCCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 344566777776643 333579999999998754
No 28
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=62.76 E-value=6.1 Score=28.63 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=34.7
Q ss_pred CcCChhHHHHHHHHHhcCCceEEeec-cCCC----CcchHHHHHHHHHhCCEEEE
Q 037311 20 EDIRDNFTSHLYSALARQNIQTFIDD-QLNR----GDEISESLVKAIKASAISVI 69 (93)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~----G~~~~~~i~~~i~~s~~~i~ 69 (93)
.|.|+.=+..|.+.|.++|+.|...+ -... |..+.+++.+++++++++|+
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~ 401 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIIS 401 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEEC
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEE
Confidence 46777788899999999999988877 4432 33345678899999998664
No 29
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=61.86 E-value=11 Score=27.17 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=28.8
Q ss_pred cccEEEeccc-C-cCChhHHHHHHHHHhcCCceEEeec-cCCCC
Q 037311 10 KYDVFVSFRG-E-DIRDNFTSHLYSALARQNIQTFIDD-QLNRG 50 (93)
Q Consensus 10 ~ydVFISy~~-~-D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G 50 (93)
.++|+|---. + +.....+..|++.|++.|++|-+|. +-.+|
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g 408 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAG 408 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHH
Confidence 4788776432 2 2224678899999999999999997 43344
No 30
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=60.46 E-value=1.8 Score=25.19 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=21.4
Q ss_pred CCCcccEEEecccC---------cCChhHHHHHHHHHhcCC
Q 037311 7 NNKKYDVFVSFRGE---------DIRDNFTSHLYSALARQN 38 (93)
Q Consensus 7 ~~~~ydVFISy~~~---------D~~~~~~~~L~~~L~~~g 38 (93)
-+..-|.+++|+.. ...-.|+..|.+.|++.|
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34456777776643 233579999999998754
No 31
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=60.24 E-value=9.4 Score=27.59 Aligned_cols=64 Identities=17% Similarity=0.412 Sum_probs=43.4
Q ss_pred eccc--CcCChhHHHHHHHHHhcC-CceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEc-CCCCCcHH
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQ-NIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFS-EDYASSRW 80 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~-gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S-~~y~~S~w 80 (93)
+|.. .|.|++=+..|.+.|.++ |..|...+ ..... ....++.+++++++.+|++.. +.|..-+|
T Consensus 324 afK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 324 TYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp CSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred eeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 4543 577888888999999999 99998887 44432 233456788899988766544 33443333
No 32
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=60.15 E-value=1.8 Score=25.25 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=19.8
Q ss_pred CcccEEEecc---------cCcCChhHHHHHHHHHhcCC
Q 037311 9 KKYDVFVSFR---------GEDIRDNFTSHLYSALARQN 38 (93)
Q Consensus 9 ~~ydVFISy~---------~~D~~~~~~~~L~~~L~~~g 38 (93)
..-|++++|+ +....-.|+..|.+.|++.+
T Consensus 13 ~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 13 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 3456666555 43334579999999998644
No 33
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=59.40 E-value=27 Score=21.17 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh-CCEEEEE
Q 037311 24 DNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA-SAISVII 70 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~-s~~~i~v 70 (93)
..++..+...|.+.|+++=+|. ..+++.+...|.++-.+ .-.+|+|
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999998863 23378888888776443 3444433
No 34
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=58.59 E-value=14 Score=26.08 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=39.3
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCCCCc-----chHHHHHHHHHhCCEEEE
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLNRGD-----EISESLVKAIKASAISVI 69 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~-----~~~~~i~~~i~~s~~~i~ 69 (93)
+|.. .|.|++=+..|.+.|.++|..|...+ -+.... .+...+.+++++++.+|+
T Consensus 318 afK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 318 IMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp CSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred eccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 5654 47788888899999999999998877 543321 122356778899998876
No 35
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=58.52 E-value=6.3 Score=28.55 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=44.5
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCC-------CCcchHHHHHHHHHhCCEEEEEEc-CCCCCcHH
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLN-------RGDEISESLVKAIKASAISVIIFS-EDYASSRW 80 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~-------~G~~~~~~i~~~i~~s~~~i~v~S-~~y~~S~w 80 (93)
+|.. .|.|++=+..|.+.|.+.|..|...+ ... ++-.+.+...+++++++.+|++.. +.|.+-+|
T Consensus 331 afK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 331 TFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp SSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred EeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 4544 57777778889999999999988876 332 243444566788999998766544 44655444
No 36
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=58.38 E-value=6.4 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhcCCceE
Q 037311 24 DNFTSHLYSALARQNIQT 41 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v 41 (93)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 469999999999999999
No 37
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=58.09 E-value=45 Score=23.32 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=38.4
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEE
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIF 71 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~ 71 (93)
..++|+|---+++. ...+..|.+.|++.|++|-+|. .+..+...+..+-..---.++++
T Consensus 297 ap~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence 44788877544433 4678899999999999999986 12345556666544333334444
No 38
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=57.17 E-value=54 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=36.1
Q ss_pred CCcccEEEecccCcCChhHHHHHHHHHhcCCceEE--eeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311 8 NKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTF--IDDQLNRGDEISESLVKAIKASAISVIIFSED 74 (93)
Q Consensus 8 ~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~--~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 74 (93)
|.+.-|.++-..+|.-...+..|++.|++.||+|. +|+ ..+..+...+.++-..---.++++.++
T Consensus 348 P~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Dd--r~~~siGkK~r~Ad~iGiPy~IiVG~k 414 (459)
T 3ikl_A 348 PIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLE--TMQSSLEQLYSKYDEMSILFTVLVTET 414 (459)
T ss_dssp SCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGS--SSCCTTHHHHHHHGGGTCSEEEEECTT
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecC--CcCCCHHHHHHHHHHcCCCEEEEECch
Confidence 44444444321124445788999999999999998 543 112334444444433333344555544
No 39
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=57.11 E-value=16 Score=25.75 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=37.5
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHH-hCCEEEEE
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIK-ASAISVII 70 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~-~s~~~i~v 70 (93)
..++|+|-.-+++. ...+..|.+.|++. |++|-+|. + ..+...+..+-. ....+|+|
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 45789888755433 46778999999998 99999886 3 344455555533 34444433
No 40
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=57.10 E-value=6.1 Score=28.97 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=39.5
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCC--CCcchHHHHHHHHHhCCEEEEEE
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLN--RGDEISESLVKAIKASAISVIIF 71 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~--~G~~~~~~i~~~i~~s~~~i~v~ 71 (93)
+|.. .|.|++=+..|.+.|.+.|..|...+ ... ++-.+..++.+++++++.+|++.
T Consensus 362 afK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t 422 (478)
T 3g79_A 362 AFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLA 422 (478)
T ss_dssp SSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECS
T ss_pred ecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEec
Confidence 4543 57787778899999999999998877 332 22233456778899998866554
No 41
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=55.52 E-value=31 Score=21.71 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=31.0
Q ss_pred EEecccCcC--ChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHH
Q 037311 14 FVSFRGEDI--RDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAI 61 (93)
Q Consensus 14 FISy~~~D~--~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i 61 (93)
||.+-+-|. .-+.+..|.+.|+++|+.+..-. .+.|..+.+.+.+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHHHh
Confidence 777777664 24678899999999999876543 233455554444443
No 42
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=55.30 E-value=10 Score=20.58 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCceEEeec-cCC---CCcchHHHHHHHHHh
Q 037311 28 SHLYSALARQNIQTFIDD-QLN---RGDEISESLVKAIKA 63 (93)
Q Consensus 28 ~~L~~~L~~~gi~v~~d~-~~~---~G~~~~~~i~~~i~~ 63 (93)
..|...|++.||++|.+. .+. |-+.+.+++...+..
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 356688889999999987 442 344566666665544
No 43
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=54.31 E-value=15 Score=26.97 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=30.2
Q ss_pred CcccEEEecc-c-Cc--CChhHHHHHHHHHhcCCceEEeec-cCCCCc
Q 037311 9 KKYDVFVSFR-G-ED--IRDNFTSHLYSALARQNIQTFIDD-QLNRGD 51 (93)
Q Consensus 9 ~~ydVFISy~-~-~D--~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~ 51 (93)
..|+|+|--- . ++ .-...+..|.+.|++.|++|-+|. +-.+|.
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~ 360 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGR 360 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 3478877654 3 31 234678899999999999999997 544443
No 44
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=53.62 E-value=3 Score=24.91 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=19.8
Q ss_pred CcccEEEeccc---------CcCChhHHHHHHHHHhcCC
Q 037311 9 KKYDVFVSFRG---------EDIRDNFTSHLYSALARQN 38 (93)
Q Consensus 9 ~~ydVFISy~~---------~D~~~~~~~~L~~~L~~~g 38 (93)
..-|++++|+. ....-.|+..|.+.|++.+
T Consensus 14 ~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 14 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 34566666553 3334579999999998654
No 45
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=51.91 E-value=43 Score=24.17 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=41.2
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeecc-CCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
...||+|-.-+++. ...+..+...|++.|++|-+|.. -..+..+...+..+-+.--..++++.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 34688876544332 35678899999999999998751 01356777777777654444444444
No 46
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A*
Probab=51.26 E-value=23 Score=23.18 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=25.0
Q ss_pred cccEEEecccCcCC----------hhHHHHHHHHHhcCCceEEeec
Q 037311 10 KYDVFVSFRGEDIR----------DNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 10 ~ydVFISy~~~D~~----------~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
...+||++...|.. ..-...+.+.|++.|+.+.+..
T Consensus 196 ~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 241 (278)
T 2gzs_A 196 TKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWD 241 (278)
T ss_dssp TCEEEEEECCC-----------CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEecCccccccccchhhhhHHHHHHHHHHHHcCCCeeEEEE
Confidence 44799999877743 2345688889999999877753
No 47
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=50.89 E-value=3 Score=24.88 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=21.8
Q ss_pred CCCcccEEEecccCc---------CChhHHHHHHHHHhcCC
Q 037311 7 NNKKYDVFVSFRGED---------IRDNFTSHLYSALARQN 38 (93)
Q Consensus 7 ~~~~ydVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (93)
-+..-|++++|+..+ ..-.|+..|.+.|++.+
T Consensus 12 iP~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 12 LPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp BCSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 345567777766533 33579999999998654
No 48
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=50.34 E-value=9 Score=23.25 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhcCCceEEe
Q 037311 24 DNFTSHLYSALARQNIQTFI 43 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~ 43 (93)
..|+..|+..|.++|++|-.
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHHCCeeecH
Confidence 47999999999999998754
No 49
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=49.29 E-value=28 Score=24.34 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=37.1
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
..++|+|-.-+++. ...+..+...|++.|++|-+|. .+..+...+..+-..---.++++.
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~~~~~a~~~g~p~~iiig 387 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIG 387 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEec---CCCCHHHHHHHHHHcCCCEEEEEC
Confidence 45788876544332 3567889999999999999986 123454555555443223444443
No 50
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=48.58 E-value=44 Score=21.57 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=28.6
Q ss_pred CcccEEEecccCcCC--hhHHHHHHHHHhcCCceEEeec
Q 037311 9 KKYDVFVSFRGEDIR--DNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 9 ~~ydVFISy~~~D~~--~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
+...||+.|...|.- ...+..+++.|++.|+.+-+..
T Consensus 182 ~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~ 220 (246)
T 4f21_A 182 KGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKH 220 (246)
T ss_dssp TTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEE
Confidence 345699999988863 4567888999999999876653
No 51
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=47.94 E-value=62 Score=21.90 Aligned_cols=53 Identities=17% Similarity=-0.043 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCceEEeec--cCC--CC-----cchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 25 NFTSHLYSALARQNIQTFIDD--QLN--RG-----DEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~--~~~--~G-----~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
..+..+.+.|++.|..+-+-+ +++ .. .+-...+.+.|..++.+|+ .||.|..+
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~-aSP~Yn~s 137 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW-CSPERHGQ 137 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE-EEEEETTE
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE-EcCccccC
Confidence 455667777777788765433 443 11 1123567888999997765 47877644
No 52
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=46.18 E-value=29 Score=24.79 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=30.5
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCC--C-cchHHHHHHHHHhCC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNR--G-DEISESLVKAIKASA 65 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~--G-~~~~~~i~~~i~~s~ 65 (93)
|-|=|...|..+.++..|.+++++.|+.+-..+.+.. + .++...+.+.|+.+.
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTT
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCC
Confidence 3344444443456788888899999987765543432 3 334434435566443
No 53
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=45.35 E-value=63 Score=23.32 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=23.7
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLN 48 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~ 48 (93)
|.|=|+..|..+.++..|.+.+++.|+.+-....+.
T Consensus 189 V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~ 224 (555)
T 2e4u_A 189 VSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG 224 (555)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence 444455545445677888888999998776544343
No 54
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=44.82 E-value=40 Score=24.16 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=30.4
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccC--CCCcchHHHHHHHHHh
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQL--NRGDEISESLVKAIKA 63 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~--~~G~~~~~~i~~~i~~ 63 (93)
|.|=|+..|-.+.++..|.+++++.|+.+-..+.+ .+++.=...+...|+.
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44445444444567888888999999877665433 3443323345556665
No 55
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=44.57 E-value=54 Score=20.58 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHHHhCCEEEEE
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAIKASAISVII 70 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~~s~~~i~v 70 (93)
.-...|.+.|.+.|+.+..-. +.+. +.+.+.+.+++++++++|.-
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-VVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 455678889999999876543 1111 34666777777777766543
No 56
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=42.46 E-value=39 Score=20.87 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHH-hCCEEEE
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIK-ASAISVI 69 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~i~ 69 (93)
.-...|.+.|++.|+.+..-.-+...+.+.+.+.++++ +++++|.
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 27 RCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 34567888899999876543211111456666667775 5665544
No 57
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=42.25 E-value=81 Score=21.65 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=28.7
Q ss_pred EEEecccCcCChh---HHHHHHHHHhcCCceEEeeccCCCC-cchHHHHHHHHH-hCCEEEEE
Q 037311 13 VFVSFRGEDIRDN---FTSHLYSALARQNIQTFIDDQLNRG-DEISESLVKAIK-ASAISVII 70 (93)
Q Consensus 13 VFISy~~~D~~~~---~~~~L~~~L~~~gi~v~~d~~~~~G-~~~~~~i~~~i~-~s~~~i~v 70 (93)
|.|=|...+-.+. ++..|.+.|++.|+.+-...-...+ .++ ..+.+.|+ +++++|+.
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~-~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDL-EDIVRNIQASERVVIMC 218 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCH-HHHHHHHHHHCSEEEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCH-HHHHHHhhcCCcEEEEe
Confidence 4444544333345 6677777888778766543322222 233 33444443 44444444
No 58
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=41.58 E-value=73 Score=20.92 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCceEEeec--cCCC--Cc----chHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 25 NFTSHLYSALARQNIQTFIDD--QLNR--GD----EISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~--~~~~--G~----~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
..+..+.+.|++.|+.+-+-+ +++. .+ +-...+.+.|.+++.+|+ .||.|..+
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP~Yn~s 112 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEECSSSS
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeCCCCCC
Confidence 466677777777888765433 4331 11 113577888999997765 58887654
No 59
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=40.63 E-value=91 Score=22.87 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=37.8
Q ss_pred cccEEEeccc-C-cCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcC
Q 037311 10 KYDVFVSFRG-E-DIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 10 ~ydVFISy~~-~-D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
.++|+|---. + +.....+..|.+.|++.|+++-+|. .+..+...+..+-..---.++++.+
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~---~~~~~g~k~~~a~~~g~p~~iivG~ 532 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDD---RNERAGVKFADADLIGCPIRITVGK 532 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEEC---SSCCHHHHHHHHHHHCCSEEEEECG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeC---CCCCHhHHHHHHHhcCCCEEEEEcc
Confidence 3788876543 2 2224677899999999999999986 1234555666654433334444433
No 60
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=39.47 E-value=31 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=36.2
Q ss_pred CcCChhHHHHHHHHHhcCCceEEeec-cCCC------Cc--chHHHHHHHHHhCCEEEEEE
Q 037311 20 EDIRDNFTSHLYSALARQNIQTFIDD-QLNR------GD--EISESLVKAIKASAISVIIF 71 (93)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~------G~--~~~~~i~~~i~~s~~~i~v~ 71 (93)
.|.|++=+..|.+.|.++|..|...+ -... |+ ...++..+++++++.+|++.
T Consensus 348 dD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t 408 (444)
T 3vtf_A 348 DDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIAT 408 (444)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECS
T ss_pred CccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEcc
Confidence 57788888899999999999998876 3211 11 12235667888888866553
No 61
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=39.13 E-value=30 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=22.7
Q ss_pred cEEEecccCcCChhHHHHHHHHHhcCCceEEeec
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
+.--=|+..|. ..+..+...|+..||.+|+.+
T Consensus 22 ~M~eL~ra~d~--v~a~~~k~LLe~aGI~~fv~D 53 (97)
T 2hfv_A 22 HLRELLRTNDA--VLLSAVGALLDGADIGHLVLD 53 (97)
T ss_dssp SEEEEEEECCH--HHHHHHHHHHHHTTCCEECCS
T ss_pred cceeeeecCCH--HHHHHHHHHHHhCCCCEEEcC
Confidence 33333455553 466778888999999999977
No 62
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=39.07 E-value=31 Score=25.92 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=36.2
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHH-hCCEEEEE
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIK-ASAISVII 70 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~i~v 70 (93)
.++|+|---.++.....+..+.+.|++.|++|-+|. .+..+...+.++-. +...+|+|
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~---~~~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDD---RNEKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC---SSCCHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence 367776543312234678899999999999999986 12345555555533 34444433
No 63
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=38.60 E-value=70 Score=19.87 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=28.3
Q ss_pred CcccEEEecccCcCC--hhHHHHHHHHHhcCCceEEeec
Q 037311 9 KKYDVFVSFRGEDIR--DNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 9 ~~ydVFISy~~~D~~--~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
....||+.|..+|.. ......+.+.|++.|..+-+..
T Consensus 150 ~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ 188 (210)
T 4h0c_A 150 KQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVV 188 (210)
T ss_dssp TTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEE
Confidence 345699999998863 3566788899999999876653
No 64
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=37.38 E-value=23 Score=25.47 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=38.1
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCCCCc--------------------chHHHHHHHHHhCCEEEEEEc
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLNRGD--------------------EISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~--------------------~~~~~i~~~i~~s~~~i~v~S 72 (93)
+|.. .|.|++=+..|.+.|.++|..|...+ .....+ .+.+...+++++++.+|++..
T Consensus 338 afK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~ 417 (467)
T 2q3e_A 338 AFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTE 417 (467)
T ss_dssp SSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSC
T ss_pred ccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecC
Confidence 4544 57788888899999999999988876 432211 011234567888888766544
No 65
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=37.30 E-value=88 Score=20.61 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=46.4
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI 88 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 88 (93)
..||-|-|+..+. ....+ ....+.|+.+.+-. .+.. .-.+.|.++.++++.+-++++|||.-...-+.+|.+.
T Consensus 45 ~~DvvIDfT~p~a---~~~~~-~~a~~~g~~~VigTTG~~~--e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~ 118 (245)
T 1p9l_A 45 NTEVVIDFTHPDV---VMGNL-EFLIDNGIHAVVGTTGFTA--ERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 118 (245)
T ss_dssp TCCEEEECSCTTT---HHHHH-HHHHHTTCEEEECCCCCCH--HHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred CCcEEEEccChHH---HHHHH-HHHHHcCCCEEEcCCCCCH--HHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHH
Confidence 5799999997753 44444 34445788887754 3322 2224555555555345568899998877777777654
Q ss_pred H
Q 037311 89 L 89 (93)
Q Consensus 89 ~ 89 (93)
.
T Consensus 119 a 119 (245)
T 1p9l_A 119 A 119 (245)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Probab=36.61 E-value=83 Score=20.15 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCcccEEEecccCcCC--hhHHHHHHHHH---hcCCceEEeec--cCCCCcchHHHHHHHH
Q 037311 8 NKKYDVFVSFRGEDIR--DNFTSHLYSAL---ARQNIQTFIDD--QLNRGDEISESLVKAI 61 (93)
Q Consensus 8 ~~~ydVFISy~~~D~~--~~~~~~L~~~L---~~~gi~v~~d~--~~~~G~~~~~~i~~~i 61 (93)
.....+||++...|.. ..-+..+.+.| ++.|+.+.+.. +-..+..+...+.+++
T Consensus 209 ~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~~~~~~g~~~~~~~~~g~~H~~~~~~~l~~~l 269 (275)
T 2qm0_A 209 KFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSKGL 269 (275)
T ss_dssp SSCEEEEEEEETTSCHHHHHHHHHHHHHHHHCCCTTEEEEEEEETTCCTTTHHHHHHHHHH
T ss_pred CCCceEEEEeCCcccchhhHHHHHHHHHHHhcccCCceEEEEECCCCCccccHHHHHHHHH
Confidence 3445678888776642 22345677777 56677765543 2222334444444444
No 67
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=36.57 E-value=55 Score=18.63 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCC
Q 037311 25 NFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYA 76 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~ 76 (93)
-++.++.+.++++|+.+-++. ++..... .+.+.+ +++++|+..
T Consensus 18 ~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-------~~~~~D--vil~~pqv~ 61 (106)
T 1e2b_A 18 LLVSKMRAQAEKYEVPVIIEAFPETLAGE-------KGQNAD--VVLLGPQIA 61 (106)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECSSSTTH-------HHHHCS--EEEECTTSG
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHh-------hccCCC--EEEEccchh
Confidence 466899999999999877765 5543322 235555 566788764
No 68
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=36.13 E-value=58 Score=19.89 Aligned_cols=43 Identities=12% Similarity=-0.006 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHHH--hCCEEE
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAIK--ASAISV 68 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~--~s~~~i 68 (93)
.-...|.+.|++.|+.+..-. +.+. +.+.+.+.++++ +++++|
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVi 67 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAYE-LVPDEPPMIKKVLRLWADREGLDLIL 67 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEE
T ss_pred chHHHHHHHHHHCCCeEeEEE-EcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 345578888999998765432 2222 346667777776 466543
No 69
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=35.85 E-value=73 Score=21.67 Aligned_cols=54 Identities=4% Similarity=-0.002 Sum_probs=32.3
Q ss_pred cEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCC-cchHHHHHHHHHhCCE
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRG-DEISESLVKAIKASAI 66 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G-~~~~~~i~~~i~~s~~ 66 (93)
.|.|=|...+-.......+.+.+++.|+.+-....+.+| .++. .+...|+.++.
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~-~~l~~i~~~~~ 220 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWG-PTLAKLRADPP 220 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCH-HHHHHHHHSCC
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHH-HHHHHHHhcCC
Confidence 355555443323456677888888899988765455555 3454 45556665543
No 70
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=35.16 E-value=1e+02 Score=22.57 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=38.1
Q ss_pred cccEEEecccC-c-CChhHHHHHHHHHhcCC-ceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 10 KYDVFVSFRGE-D-IRDNFTSHLYSALARQN-IQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 10 ~ydVFISy~~~-D-~~~~~~~~L~~~L~~~g-i~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
.++|+|---++ + .-...+..|.+.|++.| ++|-+|.. ..+...+..+-..---.++++.
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iivG 459 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTVD 459 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEEC
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEEC
Confidence 47888775443 1 22467889999999999 99988752 3566666666543333444443
No 71
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.09 E-value=87 Score=19.94 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=42.5
Q ss_pred ccEEEecccCc-CChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHH
Q 037311 11 YDVFVSFRGED-IRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEF 85 (93)
Q Consensus 11 ydVFISy~~~D-~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El 85 (93)
.=+||-|...+ .....+..+.++|++.|+.+-.- ++... -.+++.+.|++++.+++ |. -++..++..|
T Consensus 29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~-~i~~~--~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~L 97 (206)
T 3l4e_A 29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL-DIATE--SLGEITTKLRKNDFIYV---TG-GNTFFLLQEL 97 (206)
T ss_dssp EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC-CTTTS--CHHHHHHHHHHSSEEEE---CC-SCHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-EecCC--ChHHHHHHHHhCCEEEE---CC-CCHHHHHHHH
Confidence 34699987652 22367888899999999976543 23222 23466678888887664 44 4444455544
No 72
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=33.74 E-value=46 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCceEEeec-c-CCCCcchHH
Q 037311 24 DNFTSHLYSALARQNIQTFIDD-Q-LNRGDEISE 55 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~-~-~~~G~~~~~ 55 (93)
...+..|++.|++.||+|-+|+ + -.+|..+.+
T Consensus 331 ~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ 364 (519)
T 4hvc_A 331 IAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNH 364 (519)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Confidence 4678899999999999999998 5 367765543
No 73
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=33.48 E-value=86 Score=20.59 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCC-cHHHHHHHHHHHh
Q 037311 33 ALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYAS-SRWCLDEFAEILE 90 (93)
Q Consensus 33 ~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~-S~wc~~El~~~~~ 90 (93)
.++..|.++..-. +-..+-.+ +.+.+++++ ..+|++.+|+... .-+-..++.++.+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~ 171 (361)
T 3ftb_A 114 NAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLK 171 (361)
T ss_dssp HHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHH
T ss_pred HHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 3445677655433 32223333 677788877 6777888887643 3344555655554
No 74
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=33.37 E-value=67 Score=18.09 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+.++..+.+.|++.|+.+-+-+ +.. ...+.+++. |++.+|.|..+
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d~-vi~g~p~y~~~ 60 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKDV-ILLGCPAMGSE 60 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCSE-EEEECCCBTTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCCE-EEEEccccCCC
Confidence 4688899999988888764332 321 123556654 45557777543
No 75
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=33.36 E-value=1e+02 Score=20.31 Aligned_cols=37 Identities=22% Similarity=0.013 Sum_probs=27.7
Q ss_pred CcccEEEecccCcCC--hhHHHHHHHHHhcCCceEEeec
Q 037311 9 KKYDVFVSFRGEDIR--DNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 9 ~~ydVFISy~~~D~~--~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
....||+.|...|.. ...+..+.+.|++.|+.+.+..
T Consensus 204 ~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~ 242 (285)
T 4fhz_A 204 SKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHV 242 (285)
T ss_dssp CCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEE
Confidence 345689999888863 3566788889999998877653
No 76
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=33.02 E-value=90 Score=19.46 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcC-CceEEeeccCCCCcchHHHHHHHHHhCCEEEEE
Q 037311 25 NFTSHLYSALARQ-NIQTFIDDQLNRGDEISESLVKAIKASAISVII 70 (93)
Q Consensus 25 ~~~~~L~~~L~~~-gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v 70 (93)
..+..|.+.|++. |++|.+-.+-....++.+....+ .+++.+|-|
T Consensus 32 ~ia~~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~a-n~adlfISI 77 (182)
T 3czx_A 32 DMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLI-RGSDVAIEF 77 (182)
T ss_dssp HHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHH-HTCSEEEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEecCCCccCCHHHHHHHh-hCCCEEEEe
Confidence 4667899999999 99999876112222444443333 267766554
No 77
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=32.81 E-value=1.1e+02 Score=22.09 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHh
Q 037311 50 GDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILE 90 (93)
Q Consensus 50 G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~ 90 (93)
...+...+.+.|..++.-|.+.||-|..++--+..|..+..
T Consensus 256 ~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~~~~~aL~~Aa~ 296 (458)
T 3hsi_A 256 GNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLE 296 (458)
T ss_dssp SCHHHHHHHHHHHTCSSEEEEECSSSCCCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhcccEEEEEEeccCCCHHHHHHHHHHHH
Confidence 34577788889999999999999999988877777766643
No 78
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=32.34 E-value=20 Score=25.86 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=42.5
Q ss_pred Eeccc--CcCChhHHHHHHHHHhcCCceEEeec-cCCC------Cc--chHHHHHHHHHhCCEEEEEEc-CCCCCcHH
Q 037311 15 VSFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLNR------GD--EISESLVKAIKASAISVIIFS-EDYASSRW 80 (93)
Q Consensus 15 ISy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~------G~--~~~~~i~~~i~~s~~~i~v~S-~~y~~S~w 80 (93)
++|.. .|.|++=+..|.+.|.++|..|...+ ...+ |. .+.+...+++++++.+|++.. +.|.+-+|
T Consensus 326 lafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~ 403 (450)
T 3gg2_A 326 LSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDW 403 (450)
T ss_dssp CSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGGGSSCCH
T ss_pred eeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHHHhhcCH
Confidence 34544 57788888899999999999998876 4321 11 112345667888888665543 34555444
No 79
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=32.28 E-value=76 Score=19.63 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=40.6
Q ss_pred cEEEecccCcCChhHHHHHHHHHhc-CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHH
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALAR-QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEIL 89 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~-~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 89 (93)
=+|+|.+-.-...+.+..-...|.+ ...+|-+-. |++..+....++...--..+.++++ .|..+|.+.-+
T Consensus 57 vLFLSLkYH~L~PeYI~~Ri~~L~~~y~lrVLL~~VDv~d~~~~L~eL~~~c~~~~~TLiL--------awS~eEaa~Yl 128 (146)
T 2a1i_A 57 ALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLIL--------AWSPEEAGRYL 128 (146)
T ss_dssp EEEEEHHHHHHSTTHHHHHHHHHTTSSSEEEEEEECCSSSCHHHHHHHHHHHHHHTCEEEE--------ESSHHHHHHHH
T ss_pred EEEEecHHhccCHHHHHHHHHHhccccceEEEEEEEeCCChHHHHHHHHHHHHHcCCEEEE--------ECCHHHHHHHH
Confidence 3577753321112344333344433 345677766 7776665555555544455777666 47778888777
Q ss_pred hhc
Q 037311 90 ECK 92 (93)
Q Consensus 90 ~~~ 92 (93)
|..
T Consensus 129 e~~ 131 (146)
T 2a1i_A 129 ETY 131 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 80
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.07 E-value=64 Score=19.80 Aligned_cols=44 Identities=7% Similarity=0.108 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHHH--hCCEEEE
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAIK--ASAISVI 69 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~--~s~~~i~ 69 (93)
.-...|.+.|++.|+.+..-. +.+. +.+.+.+.++++ +++++|.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSYE-IVKDDKESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-EECSSHHHHHHHHHHHHTCTTCSEEEE
T ss_pred ChHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 455678888888898765432 2222 346667777776 5665433
No 81
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=31.69 E-value=30 Score=21.54 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhcCCceEEeec--cCCCCc----------------chHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSALARQNIQTFIDD--QLNRGD----------------EISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~--~~~~G~----------------~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+..+..+.+.|++.|..+-+-+ +..+.. ++...+...+.+++.+| +.||-|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii-~gsP~y~~~ 92 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV-FSSPTRFGG 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE-EEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEE-EEcCccccC
Confidence 4677888888888888764432 321110 11113455677888554 457777643
No 82
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=31.67 E-value=21 Score=25.30 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=37.6
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCCCC------------------cchHHHHHHHHHhCCEEEEEE
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLNRG------------------DEISESLVKAIKASAISVIIF 71 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G------------------~~~~~~i~~~i~~s~~~i~v~ 71 (93)
+|.. .|.|++=+..|.+.|.++|..|...+ .+..- ..+.+...+++++++.+|++.
T Consensus 322 afK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vi~~ 398 (436)
T 1mv8_A 322 SFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGN 398 (436)
T ss_dssp SSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECS
T ss_pred ccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCCcEEEEeC
Confidence 4543 57788888899999999999988876 32110 012234567788888876553
No 83
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=31.65 E-value=85 Score=18.76 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+..+..+.+.|...|+.+-+-+ +.. .-.+.+...+.+++.+ ++-||.|...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~-~~~--~~~~~~~~~~~~~d~i-i~Gspty~g~ 65 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD-LRA--VDPQELIEAVSSARGI-VLGTPPSQPS 65 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-TTT--CCHHHHHHHHHHCSEE-EEECCBSSCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE-CCC--CCHHHHHHHHHhCCEE-EEEcCCcCCc
Confidence 5688999999998898754332 211 1123555667777754 5568888643
No 84
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=31.10 E-value=1.7e+02 Score=22.05 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=38.4
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED 74 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 74 (93)
.++|+|---.. .....+..|.+.|++.|++|-+|. .+..+...+.++-..---.++|+.+.
T Consensus 539 P~qv~vipi~~-~~~~~a~~v~~~L~~~Gi~v~~D~---~~~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNITD-SQSEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp SSCEEEEESSH-HHHHHHHHHHHHHHTTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred CceEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEECch
Confidence 46777654332 224688999999999999999986 12345555655544333344555444
No 85
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=31.06 E-value=1.8e+02 Score=22.31 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=38.6
Q ss_pred cccEEEecccCc-CChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 10 KYDVFVSFRGED-IRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 10 ~ydVFISy~~~D-~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
.++|+|---+++ .-...+..|...|++.|++|.+|. .+..+...+.++-..---.++++.
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~---~~~sigkk~k~Ad~~G~p~~IiIG 619 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDD---SSGSIGRRYARTDEIGVAFGVTID 619 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECC---CCSCHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEEc
Confidence 478887654443 235788999999999999999986 123455555555443333444443
No 86
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=30.88 E-value=95 Score=19.09 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHHHh--CCEEE
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAIKA--SAISV 68 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~~--s~~~i 68 (93)
.-...|.+.|++.|+.+..-. +.+. +.+.+.+.+++++ ++++|
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~a~~~~~~DlVi 74 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKA-IVKENRYAIRAQVSAWIASDDVQVVL 74 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHSSSCCEEE
T ss_pred ccHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 455678889999999765432 2222 3466677777764 66443
No 87
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=30.77 E-value=53 Score=21.84 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHh
Q 037311 30 LYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILE 90 (93)
Q Consensus 30 L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~ 90 (93)
|...+...|.-=++|-++..++.+...+.+..++...-|++ |-|.++..|-.+|+...+.
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~-S~Hdf~~TP~~~el~~~~~ 163 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVII-SNHDFNKTPKKEEIVSRLC 163 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEE-EEEESSCCCCHHHHHHHHH
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEE-EEecCCCCCCHHHHHHHHH
Confidence 33344444543355556666666666676666666555544 4444444455566655543
No 88
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=30.68 E-value=1e+02 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=32.4
Q ss_pred cccEEEec-ccCcC-ChhHHHHHHHHHhcC--------------CceEEeec-cCCCCcchHHHHHHHHHh
Q 037311 10 KYDVFVSF-RGEDI-RDNFTSHLYSALARQ--------------NIQTFIDD-QLNRGDEISESLVKAIKA 63 (93)
Q Consensus 10 ~ydVFISy-~~~D~-~~~~~~~L~~~L~~~--------------gi~v~~d~-~~~~G~~~~~~i~~~i~~ 63 (93)
.++|+|-- ..+|. -...+..|.+.|++. |++|-+|. +-.+| ..+.++-..
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg----~k~r~Ad~~ 411 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVG----YRIKSAILK 411 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHH----HHHHHHHHH
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHH----HHHHHHHHc
Confidence 46776653 33311 246789999999988 99999987 54444 455555443
No 89
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=29.96 E-value=1e+02 Score=19.21 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311 28 SHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDY 75 (93)
Q Consensus 28 ~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y 75 (93)
..|.+.+.+..-.+.+.- -+ +.+.+.+.|.++.++-=.+=+++.+.+
T Consensus 49 ~~ll~~I~~A~~sI~i~~y~~-~~~~i~~aL~~aa~rGV~Vrii~D~~~ 96 (196)
T 4ggj_A 49 SRLLRALLAARSSLELCLFAF-SSPQLGRAVQLLHQRGVRVRVITDCDY 96 (196)
T ss_dssp HHHHHHHHTCSSEEEEEESCB-CCHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred HHHHHHHHHhheEEEEEEEEe-CCHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 345566665444444433 23 334555555555443323333344433
No 90
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=29.44 E-value=1.4e+02 Score=20.70 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=36.2
Q ss_pred CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcC
Q 037311 9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
..++|+|-.-+++. ...+..+.+.|++. ++|-+|. + ..+...+..+-..---.++++.+
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~~----~~~~~~~~~a~~~g~p~~iivG~ 386 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALAP----RKPAKGLEEALKRGAAFAGFLGE 386 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecCC----CCHHHHHHHHHhCCCCEEEEECc
Confidence 45789885544333 35778999999999 9998875 3 24444455443332234444444
No 91
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=29.35 E-value=1.2e+02 Score=19.65 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHH
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDE 84 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E 84 (93)
.++..+.+.|++.|..|-.-+ +..+.++. ...+.+..++.+|+..---+..-++.+..
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~d-L~~~~Dv~-~~~~~l~~aD~iv~~~P~y~~~~p~~lK~ 104 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITT-VDQGYDIE-SEIENYLWADTIIYQMPAWWMGEPWILKK 104 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-GGGCCCHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEE-CCCccCHH-HHHHHHHhCCEEEEECChHhccCCHHHHH
Confidence 556667777777887766543 22244543 66788999999888744444455554443
No 92
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=29.22 E-value=1.3e+02 Score=19.95 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=43.0
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI 88 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 88 (93)
..||.|-|+..+ .....+. ...+.|+.+.+-. .+... -.+.+... ++.+=++++|||.-.-.-+.+|.+.
T Consensus 53 ~~DVvIDFT~P~---a~~~~~~-~~~~~g~~~ViGTTG~~~~--~~~~l~~~---a~~~~vv~apNfSlGvnll~~l~~~ 123 (228)
T 1vm6_A 53 SPDVVIDFSSPE---ALPKTVD-LCKKYRAGLVLGTTALKEE--HLQMLREL---SKEVPVVQAYNFSIGINVLKRFLSE 123 (228)
T ss_dssp CCSEEEECSCGG---GHHHHHH-HHHHHTCEEEECCCSCCHH--HHHHHHHH---TTTSEEEECSCCCHHHHHHHHHHHH
T ss_pred CCCEEEECCCHH---HHHHHHH-HHHHcCCCEEEeCCCCCHH--HHHHHHHH---HhhCCEEEeccccHHHHHHHHHHHH
Confidence 579999999876 3444443 3345788888765 43321 11222222 3337789999998877766666543
No 93
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=29.06 E-value=1.1e+02 Score=19.07 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHHHh--CCEEEE
Q 037311 24 DNFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAIKA--SAISVI 69 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~~--s~~~i~ 69 (93)
+.-...|.+.|++.|+.+..-. +.+. +.+.+.+.+++++ ++++|.
T Consensus 39 Dsn~~~L~~~l~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 39 DESGDIIKQLLIENGHKIIGYS-LVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred ehHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3556678889999999765432 2222 3455666666665 555443
No 94
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=28.93 E-value=1.2e+02 Score=19.82 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=42.6
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHH-HHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISE-SLVKAIKASAISVIIFSEDYASSRWCLDEFAEI 88 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~-~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 88 (93)
..||-|-|+..+ .....+. .+.|+.+.... +| +.+ ++.+-.+-|+..=++++|||.-.-.-+.+|.+.
T Consensus 54 ~~DVvIDft~p~---a~~~~~~---l~~g~~vVigT---TG--~s~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~ 122 (243)
T 3qy9_A 54 GADVAIDFSNPN---LLFPLLD---EDFHLPLVVAT---TG--EKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAA 122 (243)
T ss_dssp TCSEEEECSCHH---HHHHHHT---SCCCCCEEECC---CS--SHHHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCChH---HHHHHHH---HhcCCceEeCC---CC--CCHHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHH
Confidence 689999998765 3444443 46788887754 23 122 222222334556669999999888777776543
No 95
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=28.75 E-value=35 Score=24.68 Aligned_cols=66 Identities=12% Similarity=0.334 Sum_probs=41.6
Q ss_pred Eeccc--CcCChhHHHHHHHHHhcCCceEEeec-cCCCCc---c---------------hHHHHHHHHHhCCEEEEEEc-
Q 037311 15 VSFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLNRGD---E---------------ISESLVKAIKASAISVIIFS- 72 (93)
Q Consensus 15 ISy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~---~---------------~~~~i~~~i~~s~~~i~v~S- 72 (93)
++|.. .|.|++=+..|.+.|.++|..|...+ -..+-+ . +.+...+++++++.+|++..
T Consensus 343 lafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~ 422 (481)
T 2o3j_A 343 FAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEW 422 (481)
T ss_dssp CSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTTCSEEEECSCC
T ss_pred eeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcCCCEEEEcCCc
Confidence 35544 47788888999999999999988876 432110 0 01233567888887766543
Q ss_pred CCCCCcHH
Q 037311 73 EDYASSRW 80 (93)
Q Consensus 73 ~~y~~S~w 80 (93)
+.|..-+|
T Consensus 423 ~~f~~~~~ 430 (481)
T 2o3j_A 423 DEFVELNY 430 (481)
T ss_dssp GGGTTSCH
T ss_pred HHhhccCH
Confidence 33544344
No 96
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=28.62 E-value=1.4e+02 Score=20.26 Aligned_cols=54 Identities=2% Similarity=0.003 Sum_probs=33.8
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCc-eE-EeeccCCC-CcchHHHHHHHHHhCCEEEE
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNI-QT-FIDDQLNR-GDEISESLVKAIKASAISVI 69 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi-~v-~~d~~~~~-G~~~~~~i~~~i~~s~~~i~ 69 (93)
+||-+...|. ........+.|++.|+ .+ .++ +.. .+.-.+++.+.|++++.+.+
T Consensus 60 ~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~--i~~r~~a~~~~~~~~l~~ad~I~v 116 (291)
T 3en0_A 60 GIIPSASREP-LLIGERYQTIFSDMGVKELKVLD--IRDRAQGDDSGYRLFVEQCTGIFM 116 (291)
T ss_dssp EEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECC--CCSGGGGGCHHHHHHHHHCSEEEE
T ss_pred EEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEE--ecCccccCCHHHHHHHhcCCEEEE
Confidence 5888877664 4566777788888888 33 232 211 12334567778888876644
No 97
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=28.58 E-value=1e+02 Score=20.96 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=32.6
Q ss_pred CcccEEEecccCcC-------C--hhHHHHHHHHHhcC---CceEEeec--cCCCCcchHHHHHHHHH
Q 037311 9 KKYDVFVSFRGEDI-------R--DNFTSHLYSALARQ---NIQTFIDD--QLNRGDEISESLVKAIK 62 (93)
Q Consensus 9 ~~ydVFISy~~~D~-------~--~~~~~~L~~~L~~~---gi~v~~d~--~~~~G~~~~~~i~~~i~ 62 (93)
..-.+||++...|. + ...+..+.+.|++. |+++-+.. +-..|......+.++++
T Consensus 193 ~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~~~~~~~~l~ 260 (331)
T 3gff_A 193 KQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVSHIGLYDGIR 260 (331)
T ss_dssp SSEEEEEEECCCSEETTTEECCHHHHHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCccchHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCCccccHHHHHHHHHH
Confidence 34578999988775 1 12346677777764 88877664 33334444555556554
No 98
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=28.36 E-value=11 Score=20.89 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHhCCEEEEEEcCCCCCcHHHHHHHHHHHh
Q 037311 61 IKASAISVIIFSEDYASSRWCLDEFAEILE 90 (93)
Q Consensus 61 i~~s~~~i~v~S~~y~~S~wc~~El~~~~~ 90 (93)
+.++.+.++|+||+-.-..||-..+..+++
T Consensus 37 LCdaeV~livfs~~gk~~~~~s~~~~~il~ 66 (77)
T 1egw_A 37 LCDCEIALIIFNSSNKLFQYASTDMDKVLL 66 (77)
T ss_dssp HTTCEEEEEEECTTCCEEEEESSCHHHHHH
T ss_pred ccCCeEEEEEECCCCCEeeCCCCCHHHHHH
Confidence 567889999999985544554334444443
No 99
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=27.78 E-value=1.1e+02 Score=20.59 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCC
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASA 65 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~ 65 (93)
.++..+.+.+++.|+.+-... +.+|+.=...+...|+.++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~i~~~~ 191 (395)
T 3h6g_A 152 IRLQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGK 191 (395)
T ss_dssp HHTHHHHTGGGTSSCEEEEEE-CCSSGGGGHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCCceEEEEE-eCCCchhHHHHHHHHhhcC
Confidence 455566666777788766543 5555433345566666554
No 100
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Probab=27.67 E-value=77 Score=20.22 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=25.8
Q ss_pred ccEEEecccCcC----------------ChhHHHHHHHHHhcCC-ceEEeec
Q 037311 11 YDVFVSFRGEDI----------------RDNFTSHLYSALARQN-IQTFIDD 45 (93)
Q Consensus 11 ydVFISy~~~D~----------------~~~~~~~L~~~L~~~g-i~v~~d~ 45 (93)
..+||++...|. .......+.+.|++.| +.+.+..
T Consensus 201 ~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~g~~~~~~~~ 252 (280)
T 1dqz_A 201 TRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNF 252 (280)
T ss_dssp CEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhCCCCceEEEe
Confidence 469999988885 1234467888999999 8776653
No 101
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=26.98 E-value=95 Score=17.83 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhcCCceEEe
Q 037311 24 DNFTSHLYSALARQNIQTFI 43 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~ 43 (93)
+.++..|.+.|++.|+.+-+
T Consensus 15 ~~~a~~i~~~l~~~g~~v~~ 34 (147)
T 1f4p_A 15 EYTAETIARELADAGYEVDS 34 (147)
T ss_dssp HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhcCCeeEE
Confidence 46888999989888886643
No 102
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=26.52 E-value=1.4e+02 Score=21.52 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=32.2
Q ss_pred ccEEEe-ccc-CcCChhHHHHHHHHHhcCCceEE--eeccCCCCcchHHHHHHHHH
Q 037311 11 YDVFVS-FRG-EDIRDNFTSHLYSALARQNIQTF--IDDQLNRGDEISESLVKAIK 62 (93)
Q Consensus 11 ydVFIS-y~~-~D~~~~~~~~L~~~L~~~gi~v~--~d~~~~~G~~~~~~i~~~i~ 62 (93)
++|.|- -.+ ++.-...+..|.+.|++.|++|. +|+ ..+..+...+.++-.
T Consensus 339 ~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Dd--r~~~sigkk~r~Ad~ 392 (454)
T 1g5h_A 339 IKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSE--TVHSSLEQLHSKYDE 392 (454)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGS--CCCSCHHHHHHHHHH
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecC--CCCCCHHHHHHHHHH
Confidence 778776 332 13234678899999999999995 553 223455566665544
No 103
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=25.79 E-value=1.1e+02 Score=18.30 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=27.7
Q ss_pred cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHH
Q 037311 46 QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEIL 89 (93)
Q Consensus 46 ~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 89 (93)
|..||. ......++..++.+|+++.++... .-...+...+
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l 121 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTV 121 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHH
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHH
Confidence 345554 346677888999999999999876 4444454444
No 104
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=25.63 E-value=1.6e+02 Score=19.97 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=42.6
Q ss_pred cccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHH
Q 037311 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAE 87 (93)
Q Consensus 10 ~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~ 87 (93)
..||-|-|+..+ .....+ ....+.|+++..-. .+.+ .-.+.|.++-+ ..=++++|||.-.-.-+.+|.+
T Consensus 88 ~aDVvIDFT~p~---a~~~~~-~~~l~~Gv~vViGTTG~~~--e~~~~L~~aa~---~~~~~~a~N~SiGv~ll~~l~~ 157 (288)
T 3ijp_A 88 NTEGILDFSQPQ---ASVLYA-NYAAQKSLIHIIGTTGFSK--TEEAQIADFAK---YTTIVKSGNMSLGVNLLANLVK 157 (288)
T ss_dssp SCSEEEECSCHH---HHHHHH-HHHHHHTCEEEECCCCCCH--HHHHHHHHHHT---TSEEEECSCCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCHH---HHHHHH-HHHHHcCCCEEEECCCCCH--HHHHHHHHHhC---cCCEEEECCCcHHHHHHHHHHH
Confidence 579999998654 333444 34455789888765 4421 12234444433 3456999999888777766654
No 105
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=25.62 E-value=35 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=24.6
Q ss_pred eccc--CcCChhHHHHHHHHHhcCCceEEeec
Q 037311 16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
+|.. .|.|++=+..|.+.|.++|..|...+
T Consensus 337 afK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~D 368 (478)
T 2y0c_A 337 AFKPNTDDMREAPSRELIAELLSRGARIAAYD 368 (478)
T ss_dssp SSSSSCCCCTTCHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCCCccccChHHHHHHHHHHCCCEEEEEC
Confidence 4544 47788888899999999999988876
No 106
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.52 E-value=1.3e+02 Score=19.05 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcC-CceEEeec--cCCC-------------C-------cchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 25 NFTSHLYSALARQ-NIQTFIDD--QLNR-------------G-------DEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 25 ~~~~~L~~~L~~~-gi~v~~d~--~~~~-------------G-------~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
..+..+.+.|++. |..+-+-+ ++.+ | +. ...+.+.+.+++.+|+ .||-|..+
T Consensus 19 ~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~~~~~~~l~~AD~iI~-~sP~y~~~ 93 (242)
T 1sqs_A 19 EYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADD-GGVIKKELLESDIIII-SSPVYLQN 93 (242)
T ss_dssp HHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTST-HHHHHHHHHHCSEEEE-EEEECSSS
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHH-HHHHHHHHHHCCEEEE-EccccccC
Confidence 4666777777766 77654432 3321 1 23 3467788999987765 47777643
No 107
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=25.42 E-value=1.1e+02 Score=18.22 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+..+..+.+.|.+.|+.+-+-+ +..-.. .+.+...+.+++ .|++-||.|...
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~-~~~~~~-~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVD-LGAAVD-LQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-SSSCCC-HHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-CcCcCC-HHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 5688999999999998764432 221101 234555666666 455668888743
No 108
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=25.33 E-value=82 Score=18.96 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=27.2
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED 74 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 74 (93)
++||+++.. ..+..+.+.++++|.++..=.+. ++.++. +.++.++.+-+..
T Consensus 115 i~iS~sG~t---~~~~~~~~~ak~~g~~vi~iT~~-~~s~L~-------~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 115 IGISTSGKS---PNVLEALKKAKELNMLCLGLSGK-GGGMMN-------KLCDHNLVVPSDD 165 (188)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEEEEEEG-GGTTHH-------HHCSEEEEESCSC
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCEEEEEeCC-CCcchH-------HcCCEEEEeCCCC
Confidence 466776654 23445556667788876543211 222322 4477777665443
No 109
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=24.91 E-value=37 Score=17.11 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhC
Q 037311 27 TSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKAS 64 (93)
Q Consensus 27 ~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s 64 (93)
|..|++.|..+|+.+-=-. ..+.+.+.++...+
T Consensus 10 V~eLK~~Lk~RGL~~~G~K-----adLieRL~~~~~~~ 42 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSVGGLK-----NELVQRLIKDDEES 42 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSH-----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCCcH-----HHHHHHHHHHHHhc
Confidence 4689999999998653111 34555666665544
No 110
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=24.60 E-value=43 Score=18.43 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhCCEEEEEEcCCCCCcHHH
Q 037311 53 ISESLVKAIKASAISVIIFSEDYASSRWC 81 (93)
Q Consensus 53 ~~~~i~~~i~~s~~~i~v~S~~y~~S~wc 81 (93)
..+.+.+.+...+ |+|++......+||
T Consensus 6 ~~~~~~~~i~~~~--vvvf~~g~~~~~~C 32 (105)
T 2yan_A 6 LEERLKVLTNKAS--VMLFMKGNKQEAKC 32 (105)
T ss_dssp HHHHHHHHHTSSS--EEEEESBCSSSBCT
T ss_pred HHHHHHHHhccCC--EEEEEecCCCCCCC
Confidence 4445555555444 33344433233444
No 111
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=24.47 E-value=1.3e+02 Score=19.89 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCceEE
Q 037311 26 FTSHLYSALARQNIQTF 42 (93)
Q Consensus 26 ~~~~L~~~L~~~gi~v~ 42 (93)
....+.+.|++.|+.+-
T Consensus 175 ~~~~~~~~l~~~g~~v~ 191 (386)
T 3sg0_A 175 YYKVLAAAAPKLGFELT 191 (386)
T ss_dssp HHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 44555566666676654
No 112
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=24.33 E-value=67 Score=17.67 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCEEEEEEc
Q 037311 55 ESLVKAIKASAISVIIFS 72 (93)
Q Consensus 55 ~~i~~~i~~s~~~i~v~S 72 (93)
+.+.+.+++.+.+++.+.
T Consensus 21 ~~~~~~~~~~k~vvv~F~ 38 (114)
T 2oe3_A 21 TEFRNLIKQNDKLVIDFY 38 (114)
T ss_dssp HHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEEE
Confidence 345566677777666665
No 113
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=24.28 E-value=1.2e+02 Score=21.78 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=31.2
Q ss_pred cccEEEecccC-----cCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHH
Q 037311 10 KYDVFVSFRGE-----DIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAI 61 (93)
Q Consensus 10 ~ydVFISy~~~-----D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i 61 (93)
.++|+|-.-.. +.....+..|.+.|++.|++|-+|. . +..+...+..+-
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~---~~~~g~k~~~a~ 392 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSS---KTGLSSDVRHIE 392 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTTHHHHHHHHH
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCC---CCCHHHHHHHHH
Confidence 46776654331 2224677899999999999999985 2 224444444444
No 114
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=24.24 E-value=74 Score=20.80 Aligned_cols=51 Identities=18% Similarity=0.008 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHh--CCEEEEEEcCCCC
Q 037311 25 NFTSHLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKA--SAISVIIFSEDYA 76 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~--s~~~i~v~S~~y~ 76 (93)
.-+..|.+.|++.|+.+..-- ++.+.... ..+...+.+ .--.|++.|++-+
T Consensus 24 ~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~-~~l~~~l~~l~~~d~vifTS~naV 78 (269)
T 3re1_A 24 EESAALARVLADAGIFSSSLPLLETEPLPLT-PAQRSIIFELLNYSAVIVVSKPAA 78 (269)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCCEEEECCCH-HHHHHHHHTGGGSSEEEECSHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEcCCEEEecCCCc-HHHHHHHHhccCCCEEEEECHHHH
Confidence 456788999999999877654 66666543 244444442 2335666677643
No 115
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.16 E-value=1.4e+02 Score=18.81 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCCceEEeeccCCCC--cchHHHHHHHH-HhCCEEEE
Q 037311 24 DNFTSHLYSALARQNIQTFIDDQLNRG--DEISESLVKAI-KASAISVI 69 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~~i-~~s~~~i~ 69 (93)
+.-...|...|++.|+.+..-. +.+. +.+.+.+.+++ ++++++|.
T Consensus 48 Dsn~~~L~~~L~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~DlVIt 95 (185)
T 3rfq_A 48 DHSGPLVTELLTEAGFVVDGVV-AVEADEVDIRNALNTAVIGGVDLVVS 95 (185)
T ss_dssp CSHHHHHHHHHHHTTEEEEEEE-EECSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3456678889999999766432 2222 33555666665 35565543
No 116
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=24.12 E-value=17 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHhCCEEEEEEcCCCCCcHHHHHHHHHHHh
Q 037311 60 AIKASAISVIIFSEDYASSRWCLDEFAEILE 90 (93)
Q Consensus 60 ~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~ 90 (93)
-+.++.+.++|+||+=.-..||-..+..+++
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~ 66 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHH
Confidence 3678899999999884444454333444443
No 117
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=24.04 E-value=1.5e+02 Score=20.80 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.2
Q ss_pred ccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHH
Q 037311 11 YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESL 57 (93)
Q Consensus 11 ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i 57 (93)
-.|.|.|-+....+..+..+.+.|.+.|+.+.+- .++.|.++.+-+
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~-~lP~gkDpdd~l 333 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV-YLPEGYDPDEFI 333 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE-CCCTTCCHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE-ECCCCCChHHHH
Confidence 3688888665554566777777788888877654 345566665543
No 118
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.04 E-value=88 Score=19.02 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=17.4
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEe
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~ 43 (93)
+.||+++.. ..+..+.+.++++|.++..
T Consensus 114 I~iS~SG~t---~~~i~~~~~ak~~g~~vI~ 141 (196)
T 2yva_A 114 LAISTRGNS---RDIVKAVEAAVTRDMTIVA 141 (196)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCEEEE
Confidence 466777654 2344555667788887654
No 119
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=24.02 E-value=1.2e+02 Score=20.32 Aligned_cols=53 Identities=6% Similarity=0.047 Sum_probs=31.8
Q ss_pred cEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCC-cchHHHHHHHHHhCC
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRG-DEISESLVKAIKASA 65 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G-~~~~~~i~~~i~~s~ 65 (93)
.|.|=|...+-....+..+.+.|++.|+.+.......+| .++. .+...|+.+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFT-AVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCH-HHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHH-HHHHHHHhcC
Confidence 466656544333456778888888899987755444445 3444 4455555543
No 120
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=23.92 E-value=1.7e+02 Score=19.76 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCC----ceEEeeccCCCCcchHHHHHHHHHh--C-CEEEEEEcCCCCCc--HHHHHHHHHHHh
Q 037311 25 NFTSHLYSALARQN----IQTFIDDQLNRGDEISESLVKAIKA--S-AISVIIFSEDYASS--RWCLDEFAEILE 90 (93)
Q Consensus 25 ~~~~~L~~~L~~~g----i~v~~d~~~~~G~~~~~~i~~~i~~--s-~~~i~v~S~~y~~S--~wc~~El~~~~~ 90 (93)
..+..|.+.|.++| +.|.+ -+.-|.+..++..+.+.+ . +++++.+.|.|..+ .-..+++..++.
T Consensus 62 ~q~~~L~~~L~~~~~~~~~~V~~--amry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~ 134 (310)
T 2h1v_A 62 QQAHNLEQHLNEIQDEITFKAYI--GLAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAE 134 (310)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEE--EESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEee--hhcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHH
Confidence 45667777776554 44544 356676666666666654 3 45778888888543 335556655543
No 121
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=23.76 E-value=98 Score=20.14 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=26.2
Q ss_pred ccEEEecccCcC----------------ChhHHHHHHHHHhcCC-ceEEeec
Q 037311 11 YDVFVSFRGEDI----------------RDNFTSHLYSALARQN-IQTFIDD 45 (93)
Q Consensus 11 ydVFISy~~~D~----------------~~~~~~~L~~~L~~~g-i~v~~d~ 45 (93)
..+||.+...|. .......+.+.|++.| +.+.+..
T Consensus 206 ~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~G~~~v~~~~ 257 (304)
T 1sfr_A 206 TRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDF 257 (304)
T ss_dssp CEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhCCCCceEEEe
Confidence 579999988885 1234568889999999 8776653
No 122
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=23.44 E-value=1.1e+02 Score=17.58 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=31.8
Q ss_pred EEecccCcCChhHHHHHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311 14 FVSFRGEDIRDNFTSHLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKASAISVIIFSEDY 75 (93)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y 75 (93)
.|+|... ...+....+.|++.|+++-+-+ -+.|=+. +.+.+.+++.+.+ +++-.++
T Consensus 18 iv~~Gs~---~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~--~~l~~~~~~~~~v-vvvE~~~ 75 (118)
T 3ju3_A 18 FVTWGSQ---KGPILDVIEDLKEEGISANLLYLKMFSPFPT--EFVKNVLSSANLV-IDVESNY 75 (118)
T ss_dssp EEEEGGG---HHHHHHHHHHHHHTTCCEEEEEECSSCSCCH--HHHHHHHTTCSCC-CCCCCCC
T ss_pred EEEECcc---HHHHHHHHHHHHHCCCceEEEEECeEecCCH--HHHHHHHcCCCEE-EEEECCC
Confidence 6666443 1345555667888899876544 4444322 3456666666554 4556665
No 123
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=23.36 E-value=1.8e+02 Score=19.71 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=28.7
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCC-CCc-chHHHHHHHHHhCC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLN-RGD-EISESLVKAIKASA 65 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~-~G~-~~~~~i~~~i~~s~ 65 (93)
|.|=| ..|.....+..+.+++++.|+.+-...-+. .++ ++. .+...|+.+.
T Consensus 133 vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~-~~l~~ik~~~ 185 (389)
T 3o21_A 133 FVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFR-RIIEEMDRRQ 185 (389)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHH-HHHHHHHTTT
T ss_pred EEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHH-HHHHHHHhCC
Confidence 44445 334444667778888888888776554222 233 444 4555666554
No 124
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=23.24 E-value=1.1e+02 Score=18.71 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHHHHHHH----HhcCCceEEeeccCCCC--cchHHHHHHHHH-hCCEEEE
Q 037311 26 FTSHLYSA----LARQNIQTFIDDQLNRG--DEISESLVKAIK-ASAISVI 69 (93)
Q Consensus 26 ~~~~L~~~----L~~~gi~v~~d~~~~~G--~~~~~~i~~~i~-~s~~~i~ 69 (93)
-...|.+. |++.|+.+..-. +.+. +.+.+.+.++++ +++.+|.
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~~DlVit 75 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISEV-VVPEGYDTVVEAIATALKQGARFIIT 75 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEEE-EECSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhHHhHHHHCCCEEeEEE-EeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44567777 888898765432 2222 346666777776 3665543
No 125
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=23.18 E-value=1.5e+02 Score=18.93 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=25.4
Q ss_pred cccEEEec----ccCcC---------ChhHHHHHHHHHhcCC-ceEEee
Q 037311 10 KYDVFVSF----RGEDI---------RDNFTSHLYSALARQN-IQTFID 44 (93)
Q Consensus 10 ~ydVFISy----~~~D~---------~~~~~~~L~~~L~~~g-i~v~~d 44 (93)
...+||.+ ...|. .......+.+.|++.| +.+.+.
T Consensus 198 ~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 246 (280)
T 1r88_A 198 NTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFD 246 (280)
T ss_dssp TCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcceEEE
Confidence 35799999 77775 1234568888999999 876654
No 126
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=22.86 E-value=1.1e+02 Score=18.03 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 25 NFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
.-+..|...|.+.|+.+..-. ++... -...+.+..++...-|+|.+
T Consensus 46 ~~~~~l~~~L~~~~~~~~~~hg~~~~~--~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 46 EHVNQLTDELDDLGYPCDKIHGGMIQE--DRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHH--HHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHH--HHHHHHHHHHcCCCeEEEEC
Confidence 345667777777777766554 44332 22355556665555555554
No 127
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=22.66 E-value=32 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcC-CceEEeec--cCCCCcchHH
Q 037311 24 DNFTSHLYSALARQ-NIQTFIDD--QLNRGDEISE 55 (93)
Q Consensus 24 ~~~~~~L~~~L~~~-gi~v~~d~--~~~~G~~~~~ 55 (93)
...+..|++.|.+. |++|-+|+ +-.+|..+.+
T Consensus 322 ~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ 356 (518)
T 3ial_A 322 LGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYY 356 (518)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHH
Confidence 36788999999999 99999997 4566655543
No 128
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.48 E-value=1.1e+02 Score=18.30 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=27.8
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSE 73 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~ 73 (93)
++||+++.. . -+....+.++++|.++..=.+-. +. +. +.++..+.+-++
T Consensus 87 i~iS~sG~t--~-~~~~~~~~ak~~g~~vi~IT~~~-~s-l~-------~~ad~~l~~~~~ 135 (180)
T 1jeo_A 87 ILISGSGRT--E-SVLTVAKKAKNINNNIIAIVCEC-GN-VV-------EFADLTIPLEVK 135 (180)
T ss_dssp EEEESSSCC--H-HHHHHHHHHHTTCSCEEEEESSC-CG-GG-------GGCSEEEECCCC
T ss_pred EEEeCCCCc--H-HHHHHHHHHHHCCCcEEEEeCCC-Ch-HH-------HhCCEEEEeCCc
Confidence 577887764 2 33455566778898765433221 11 22 467777666554
No 129
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=22.37 E-value=1.5e+02 Score=18.51 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHH-----hCC-EEEEEEcCCCC
Q 037311 27 TSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIK-----ASA-ISVIIFSEDYA 76 (93)
Q Consensus 27 ~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~-----~s~-~~i~v~S~~y~ 76 (93)
+..|...|++.|+.|....++. .+.+.+.|.+..+ .++ .+++++|....
T Consensus 67 a~~L~~~f~~LgF~V~~~~dlt-~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~ 121 (178)
T 2h54_A 67 ITGMTMLLQNLGYSVDVKKNLT-ASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIR 121 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCS
T ss_pred HHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCC
Confidence 4678889999999987765543 3445555544332 233 45666676643
No 130
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=22.35 E-value=1.1e+02 Score=19.57 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHhCCE-EEEEEcCC
Q 037311 29 HLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKASAI-SVIIFSED 74 (93)
Q Consensus 29 ~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~s~~-~i~v~S~~ 74 (93)
.|.+.|+++|+.|..-. +..+.....+.+.+.+..... .|++.|+.
T Consensus 145 ~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~ 193 (261)
T 1wcw_A 145 LLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAI 193 (261)
T ss_dssp HHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHH
T ss_pred HHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHH
Confidence 46678888998876543 444433323455566665443 55556665
No 131
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=22.30 E-value=1.8e+02 Score=19.31 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhC---CEEEEEEcCC
Q 037311 28 SHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKAS---AISVIIFSED 74 (93)
Q Consensus 28 ~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s---~~~i~v~S~~ 74 (93)
..+.+.|++.|+.+..-. +-...++|...+...++++ +.+++-+|=+
T Consensus 34 ~~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSGH 84 (285)
T 3bij_A 34 EDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSGH 84 (285)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEESC
T ss_pred HHHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence 345566777898854332 2234566666666655544 6777777643
No 132
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=22.24 E-value=2e+02 Score=19.94 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCceEE-eec-cCCCCcchHHHHHHHHH--hCCEEEEE
Q 037311 26 FTSHLYSALARQNIQTF-IDD-QLNRGDEISESLVKAIK--ASAISVII 70 (93)
Q Consensus 26 ~~~~L~~~L~~~gi~v~-~d~-~~~~G~~~~~~i~~~i~--~s~~~i~v 70 (93)
+.+.+.+.|++.|+.+. ++. .-.|.....+++.+.++ +++.+|.|
T Consensus 47 ~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 95 (383)
T 3ox4_A 47 VVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISL 95 (383)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 55666667777776542 233 33344333334444433 24444443
No 133
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.19 E-value=1e+02 Score=18.46 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=27.3
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 72 (93)
+.||+++.- .-+..+.+.++++|.++..=.+- ++.++ .+.++.++.+-+
T Consensus 101 I~iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~-~~s~l-------a~~ad~~l~~~~ 149 (183)
T 2xhz_A 101 IAISNSGES---SEITALIPVLKRLHVPLICITGR-PESSM-------ARAADVHLCVKV 149 (183)
T ss_dssp EEECSSSCC---HHHHHHHHHHHTTTCCEEEEESC-TTSHH-------HHHSSEEEECCC
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCCEEEEECC-CCChh-------HHhCCEEEEeCC
Confidence 467777654 23445556778888876543321 12222 245777776654
No 134
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=22.15 E-value=1.3e+02 Score=22.55 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=21.1
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeec
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
|-|=| ..|.....+..+.+++++.|+.+-...
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~ 155 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAIN 155 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEEEE
Confidence 33444 333345777888888888888776554
No 135
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.04 E-value=46 Score=16.70 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCceE
Q 037311 27 TSHLYSALARQNIQT 41 (93)
Q Consensus 27 ~~~L~~~L~~~gi~v 41 (93)
|..|++.|..+|+.+
T Consensus 15 V~eLK~eLk~RgL~~ 29 (50)
T 1zrj_A 15 VNELREELQRRGLDT 29 (50)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 568999999999854
No 136
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=21.87 E-value=1.1e+02 Score=20.12 Aligned_cols=47 Identities=21% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHh-CC-EEEEEEcCCC
Q 037311 29 HLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKA-SA-ISVIIFSEDY 75 (93)
Q Consensus 29 ~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~-s~-~~i~v~S~~y 75 (93)
.|.+.|+++|+.|..-. +..+.....+.+.+.+++ .. -.|++.||.-
T Consensus 171 ~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~ 221 (286)
T 1jr2_A 171 ILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSG 221 (286)
T ss_dssp CHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHH
T ss_pred HHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHH
Confidence 35677888898765433 444444444455566654 33 3555566653
No 137
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=21.87 E-value=47 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHHHHHHhCCEEEEEEcCCCCC
Q 037311 56 SLVKAIKASAISVIIFSEDYAS 77 (93)
Q Consensus 56 ~i~~~i~~s~~~i~v~S~~y~~ 77 (93)
....++....+.++|||++|..
T Consensus 43 ~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 43 AELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp C--------CEEEEECCSSCCC
T ss_pred HHhCCccCCceEEEEecCCccc
Confidence 3455689999999999999964
No 138
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=21.69 E-value=1e+02 Score=18.77 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=28.5
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED 74 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 74 (93)
+.||+++.. ..+..+.+.++++|.++..=.+ .++. .+.+.++.++.++.+-+..
T Consensus 118 I~iS~SG~t---~~~i~~~~~ak~~g~~vI~IT~-~~~s----~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 118 LAISTSGNS---ANVIQAIQAAHDREMLVVALTG-RDGG----GMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEEEEEC-TTCH----HHHHHCCTTCEEEECSCSC
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCEEEEEEC-CCCC----cHHhccccCCEEEEeCCCc
Confidence 466777754 2344555677888987654322 1222 2222222377777665543
No 139
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=21.63 E-value=97 Score=22.22 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=35.5
Q ss_pred cEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhC
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKAS 64 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s 64 (93)
-|.|+|-..-..+.|+..+...|...|++|+++..+. -++.+.-+++.-
T Consensus 50 ~VvVG~D~R~ss~~~~~a~a~gl~~~G~~V~~~~g~~----pTP~~~~av~~~ 98 (464)
T 1tuo_A 50 LVVVGHDTRFLADAFARALSGHLAGMGLKVVLLKGPV----PTPLLSFAVRHL 98 (464)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEESSSC----CHHHHHHHHHHT
T ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHCCCeEEEcCCCC----CHHHHHHHHHHh
Confidence 4888886655557899999999999999998764332 335666666653
No 140
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=21.57 E-value=1.1e+02 Score=18.33 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhcCCceE
Q 037311 24 DNFTSHLYSALARQNIQT 41 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v 41 (93)
+.++..|.+.|.+.|+.+
T Consensus 24 ~~~A~~ia~~l~~~g~~v 41 (167)
T 1ykg_A 24 RRVAEALRDDLLAAKLNV 41 (167)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHCCCce
Confidence 568899999998777654
No 141
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.49 E-value=63 Score=20.57 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCceEEeec-cCCCC--cchHHHHHHHHH--hCCEEE
Q 037311 26 FTSHLYSALARQNIQTFIDD-QLNRG--DEISESLVKAIK--ASAISV 68 (93)
Q Consensus 26 ~~~~L~~~L~~~gi~v~~d~-~~~~G--~~~~~~i~~~i~--~s~~~i 68 (93)
-...|.+.|++.|+.++... .+.+. +.+.+.+.++++ +++++|
T Consensus 24 n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVi 71 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVL 71 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 44567788888887643222 33333 245566666666 355543
No 142
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.35 E-value=1.3e+02 Score=17.30 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCCceEEee
Q 037311 24 DNFTSHLYSALARQNIQTFID 44 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d 44 (93)
+.++..|.+.|++.|+.+-+-
T Consensus 16 ~~~A~~ia~~l~~~g~~v~~~ 36 (148)
T 3f6r_A 16 ESIAQKLEELIAAGGHEVTLL 36 (148)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEE
Confidence 578899999999889876543
No 143
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=21.29 E-value=1.2e+02 Score=18.40 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCceEEeec--cCCCC-------------cchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSALARQNIQTFIDD--QLNRG-------------DEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~L~~~gi~v~~d~--~~~~G-------------~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+..+..+.+.|++.|+.+-+-+ +..++ ..+. . .+.+.+++.+| +.||-|..+
T Consensus 18 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~-~-~~~l~~aD~ii-~gsP~y~~~ 84 (199)
T 2zki_A 18 VELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV-T-LDDMRWADGFA-IGSPTRYGN 84 (199)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBC-C-HHHHHHCSEEE-EEEECBTTB
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccc-c-HHHHHhCCEEE-EECCccccC
Confidence 4577888888887787654432 33111 0111 1 45677888764 457887644
No 144
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=21.12 E-value=1.1e+02 Score=18.53 Aligned_cols=28 Identities=7% Similarity=-0.016 Sum_probs=16.5
Q ss_pred EEEecccCcCChhHHHHHHHHHhcCCceEEe
Q 037311 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFI 43 (93)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~ 43 (93)
++||+++.. ..+..+.+.++++|.++..
T Consensus 121 I~iS~SG~t---~~~~~~~~~ak~~g~~vI~ 148 (198)
T 2xbl_A 121 IGYSTSGKS---PNILAAFREAKAKGMTCVG 148 (198)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCeEEE
Confidence 466776654 2333455666778887654
No 145
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=21.04 E-value=1.8e+02 Score=18.80 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCc-eEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCC
Q 037311 25 NFTSHLYSALARQNI-QTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYA 76 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi-~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~ 76 (93)
.+-..|.+.+..-+. -+.+.+.-.....+.-+|..|+.+..+-|+++-|+|-
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCcc
Confidence 566777777776544 4444444333446666999999777777777777765
No 146
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=20.90 E-value=1.3e+02 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCCcccEEEecccCc--CC---hhHHHHHHHHHhcCCceEEeec
Q 037311 7 NNKKYDVFVSFRGED--IR---DNFTSHLYSALARQNIQTFIDD 45 (93)
Q Consensus 7 ~~~~ydVFISy~~~D--~~---~~~~~~L~~~L~~~gi~v~~d~ 45 (93)
....|| |..-| .+ .+=...|.+++.++||+|.+|-
T Consensus 74 ~~~GY~----~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~VilD~ 113 (527)
T 1gcy_A 74 GGEGYF----WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDV 113 (527)
T ss_dssp CCSSTT----CSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcc----cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457788 44444 32 2223577888999999999984
No 147
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=20.86 E-value=77 Score=17.15 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHhcCCce
Q 037311 22 IRDNFTSHLYSALARQNIQ 40 (93)
Q Consensus 22 ~~~~~~~~L~~~L~~~gi~ 40 (93)
....|..+|++.|++.|.+
T Consensus 48 v~DDFs~QLr~EL~k~~~k 66 (70)
T 3t5x_B 48 VEDDFSNQLRAELEKHGYK 66 (70)
T ss_dssp CCSHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHhhhc
Confidence 3457999999999988764
No 148
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=20.85 E-value=1.8e+02 Score=20.13 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred cEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHH
Q 037311 12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESL 57 (93)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i 57 (93)
.|.+.|-+.......+..+.+.|.+.|+++.+- .++.|.+..+-+
T Consensus 197 ~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~-~lP~gkDpdd~l 241 (329)
T 4edg_A 197 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI-QLPSGMDPDEYI 241 (329)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC-CCCTTCCHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE-ECCCCCCHHHHH
Confidence 588888665554556667777777788877664 455666665444
No 149
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=20.64 E-value=1.6e+02 Score=18.39 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh----CC-EEEEEEcCC
Q 037311 27 TSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA----SA-ISVIIFSED 74 (93)
Q Consensus 27 ~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~----s~-~~i~v~S~~ 74 (93)
+..|...|+..|+.|....++ ..+.+.+.|.+.-+. ++ .+++++|.+
T Consensus 71 ~~~L~~~F~~LgF~V~v~~dl-t~~em~~~l~~~s~~dh~~~dc~vvvilSHG 122 (173)
T 2ql9_A 71 AEALFKCFRSLGFDVIVYNDC-SCAKMQDLLKKASEEDHTNAACFACILLSHG 122 (173)
T ss_dssp HHHHHHHHHHHTEEEEEEESC-CHHHHHHHHHHHHTSCCTTEEEEEEEEESCE
T ss_pred HHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHhhccCCCeEEEeecCCC
Confidence 467888889999998776555 344555555553332 12 356777765
No 150
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=20.50 E-value=1.3e+02 Score=21.28 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=18.2
Q ss_pred HHhcCCceEEeec-cCCCCcchHH
Q 037311 33 ALARQNIQTFIDD-QLNRGDEISE 55 (93)
Q Consensus 33 ~L~~~gi~v~~d~-~~~~G~~~~~ 55 (93)
.|.+.|+.|++-- -+.|+.+|.+
T Consensus 248 ~l~~aGipv~v~iaPIiP~~~~~e 271 (368)
T 4fhd_A 248 KVAGAGYKLGFVVAPIYRHEGWER 271 (368)
T ss_dssp HHHHTTCEEEEEEEEECCCTTHHH
T ss_pred HHHHCCCeEEEEEeCcCCCCCCHH
Confidence 5567899999887 8888877764
No 151
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=20.46 E-value=1.7e+02 Score=18.28 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCC-CcHHHHH
Q 037311 25 NFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYA-SSRWCLD 83 (93)
Q Consensus 25 ~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~-~S~wc~~ 83 (93)
.+++.+.+.|++.|..+-.- ++..++++ ..+.+.|..++.+|+. +|-|- .-++-++
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~-dL~~~~d~-~~~~~~l~~AD~iV~~-~P~y~~s~pa~LK 90 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIV-RADSDYDV-KAEVQNFLWADVVIWQ-MPGWWMGAPWTVK 90 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-ESSSCCCH-HHHHHHHHHCSEEEEE-EECBTTBCCHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEE-eCCccccH-HHHHHHHHhCCEEEEE-CCccccCCCHHHH
Confidence 35556666677778766443 33334454 4778899999987766 55554 4444443
No 152
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=20.40 E-value=1.7e+02 Score=18.43 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh----CC-EEEEEEcCC
Q 037311 27 TSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA----SA-ISVIIFSED 74 (93)
Q Consensus 27 ~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~----s~-~~i~v~S~~ 74 (93)
+..|...|+..|+.|....++ ..+.+.+.|.+..+. ++ .+++++|..
T Consensus 71 ~~~L~~~F~~LGF~V~~~~dl-t~~em~~~l~~~~~~dh~~~dc~vvvilSHG 122 (179)
T 3p45_A 71 RDNLTRRFSDLGFEVKCFNDL-KAEELLLKIHEVSTVSHADADCFVCVFLSHG 122 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEESC-CHHHHHHHHHHHHTSCCTTBSCEEEEEESCE
T ss_pred HHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHhhhhcCCCCEEEEEEeccC
Confidence 467888999999998876654 334555555554331 23 356677765
No 153
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.15 E-value=1.6e+02 Score=17.99 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=32.9
Q ss_pred hhHHHHHHHH-HhcCCceEEeec--cCCCC--------cchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311 24 DNFTSHLYSA-LARQNIQTFIDD--QLNRG--------DEISESLVKAIKASAISVIIFSEDYASS 78 (93)
Q Consensus 24 ~~~~~~L~~~-L~~~gi~v~~d~--~~~~G--------~~~~~~i~~~i~~s~~~i~v~S~~y~~S 78 (93)
+..+..+.+. |++.|..+-+-+ ++... .+-...+.+.+.+++.+|+ .||.|..+
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~-~sP~y~~~ 83 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV-ATPIYKAS 83 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE-EEECBTTB
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE-EeCccCCC
Confidence 3577788888 887787654432 43210 1112356677888887655 57887654
Done!