BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037313
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 153/364 (42%), Gaps = 86/364 (23%)
Query: 80 NLTGTIPSE-LGDLSSLQTLDLSFHWFSGSIPASIYNMS-SLLSINFT------------ 125
N +G +P + L + L+ LDLSF+ FSG +P S+ N+S SLL+++ +
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 126 --------------NNTLFAELPPIF------------FFYLK--VPPTVGALPRIPCPP 157
NN ++PP F YL +P ++G+L ++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL---- 444
Query: 158 QD-TLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPXXXXXXXXXXXXXXXXXXXKG 216
+D LWL + I + + ++ N LTG IP G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIP----KEIG 272
E+P I L L IL L N+F IP+ L C+ L L L+ N F+G IP K+ G
Sbjct: 505 EIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 273 NLTK-----LKSLYLSQNSL-------------QGI----VNRLSAELPANF-------- 302
+ + +Y+ + + QGI +NRLS P N
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 303 ----YNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLE 358
++N + L +S NM G +P ++ + Y IL LG ND SG+IP E+G++ L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 359 NLDL 362
LDL
Sbjct: 684 ILDL 687
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 141/352 (40%), Gaps = 78/352 (22%)
Query: 62 ITCDVRSQRVTAL---NISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSS 118
I+ DV R L ++S N + IP LGD S+LQ LD+S + SG +I +
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 119 LLSINFTNNTLFAELPPIFF-------------------------------------FYL 141
L +N ++N +PP+ FY
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 142 KVPPTVGALPRIPCP-----------PQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFL 190
VPP G+ + P DTL K + +K+ ++E
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLL---KMRGLKVLDLSFNE----------F 355
Query: 191 TGTIPXXXXXXXXXXXXXXXXXXX-KGELPANICNNLP-FLEILLLDENNFGRRIPSTLS 248
+G +P G + N+C N L+ L L N F +IP TLS
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308
C L +L LS N SG IP +G+L+KL+ L L N L+G E+P +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-------EIPQELM-YVKT 467
Query: 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENL 360
LE L L N G++PS L+NC+ + L N +G IPK IG +LENL
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---RLENL 516
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 30/281 (10%)
Query: 34 LKGHVTDDLAKKLARNWDT------SSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPS 87
L G + L+ NW + + + W G R + + L +S + +G IP+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-----RLENLAILKLSNNSFSGNIPA 532
Query: 88 ELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147
ELGD SL LDL+ + F+G+IPA+++ S ++ NF + Y+K
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV--------YIKNDGM- 583
Query: 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPXXXXXXXXXXXX 207
+ C L Q ++ +L R + ++ G
Sbjct: 584 ----KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR--VYGGHTSPTFDNNGSMMFL 637
Query: 208 XXXXXXXKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAI 267
G +P I ++P+L IL L N+ IP + + L L LS N G I
Sbjct: 638 DMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 268 PKEIGNLTKLKSLYLSQNSLQGIV---NRLSAELPANFYNN 305
P+ + LT L + LS N+L G + + PA F NN
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 76/188 (40%), Gaps = 45/188 (23%)
Query: 216 GELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLT 275
G++ + C NL FL++ NNF IP L C LQ L +S N SG + I T
Sbjct: 192 GDVDVSRCVNLEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 276 KLKSLYLSQNSLQGIV---------------NRLSAELPANFYNNIPFLEELYLSKNMFY 320
+LK L +S N G + N+ + E+P L L LS N FY
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 321 GDMP-------------------------SDLANCSYFRILILGFNDFSGAIPKEIGNMT 355
G +P L ++L L FN+FSG +P+ + N++
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 356 -KLENLDL 362
L LDL
Sbjct: 368 ASLLTLDL 375
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 74 LNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAEL 133
LN+ +++G+IP E+GDL L LDLS + G IP ++ ++ L I+ +NN L +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 134 PPIFFF-------YLKVPPTVG-ALPRIPCPPQDT 160
P + F +L P G LPR C P +
Sbjct: 721 PEMGQFETFPPAKFLNNPGLCGYPLPR--CDPSNA 753
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 153/364 (42%), Gaps = 86/364 (23%)
Query: 80 NLTGTIPSE-LGDLSSLQTLDLSFHWFSGSIPASIYNMS-SLLSINFT------------ 125
N +G +P + L + L+ LDLSF+ FSG +P S+ N+S SLL+++ +
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 126 --------------NNTLFAELPPIF------------FFYLK--VPPTVGALPRIPCPP 157
NN ++PP F YL +P ++G+L ++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL---- 441
Query: 158 QD-TLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPXXXXXXXXXXXXXXXXXXXKG 216
+D LWL + I + + ++ N LTG IP G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIP----KEIG 272
E+P I L L IL L N+F IP+ L C+ L L L+ N F+G IP K+ G
Sbjct: 502 EIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 273 NLTK-----LKSLYLSQNSL-------------QGI----VNRLSAELPANF-------- 302
+ + +Y+ + + QGI +NRLS P N
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 303 ----YNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLE 358
++N + L +S NM G +P ++ + Y IL LG ND SG+IP E+G++ L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 359 NLDL 362
LDL
Sbjct: 681 ILDL 684
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 141/352 (40%), Gaps = 78/352 (22%)
Query: 62 ITCDVRSQRVTAL---NISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSS 118
I+ DV R L ++S N + IP LGD S+LQ LD+S + SG +I +
Sbjct: 187 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 119 LLSINFTNNTLFAELPPIFF-------------------------------------FYL 141
L +N ++N +PP+ FY
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 142 KVPPTVGALPRIPCP-----------PQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFL 190
VPP G+ + P DTL K + +K+ ++E
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLL---KMRGLKVLDLSFNE----------F 352
Query: 191 TGTIPXXXXXXXXXXXXXXXXXXX-KGELPANICNNLP-FLEILLLDENNFGRRIPSTLS 248
+G +P G + N+C N L+ L L N F +IP TLS
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308
C L +L LS N SG IP +G+L+KL+ L L N L+G E+P +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-------EIPQELM-YVKT 464
Query: 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENL 360
LE L L N G++PS L+NC+ + L N +G IPK IG +LENL
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---RLENL 513
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 30/281 (10%)
Query: 34 LKGHVTDDLAKKLARNWDT------SSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPS 87
L G + L+ NW + + + W G R + + L +S + +G IP+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-----RLENLAILKLSNNSFSGNIPA 529
Query: 88 ELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147
ELGD SL LDL+ + F+G+IPA+++ S ++ NF + Y+K
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV--------YIKNDGM- 580
Query: 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPXXXXXXXXXXXX 207
+ C L Q ++ +L R + ++ G
Sbjct: 581 ----KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR--VYGGHTSPTFDNNGSMMFL 634
Query: 208 XXXXXXXKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAI 267
G +P I ++P+L IL L N+ IP + + L L LS N G I
Sbjct: 635 DMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 268 PKEIGNLTKLKSLYLSQNSLQGIV---NRLSAELPANFYNN 305
P+ + LT L + LS N+L G + + PA F NN
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 76/188 (40%), Gaps = 45/188 (23%)
Query: 216 GELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLT 275
G++ + C NL FL++ NNF IP L C LQ L +S N SG + I T
Sbjct: 189 GDVDVSRCVNLEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 244
Query: 276 KLKSLYLSQNSLQGIV---------------NRLSAELPANFYNNIPFLEELYLSKNMFY 320
+LK L +S N G + N+ + E+P L L LS N FY
Sbjct: 245 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 321 GDMP-------------------------SDLANCSYFRILILGFNDFSGAIPKEIGNMT 355
G +P L ++L L FN+FSG +P+ + N++
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 356 -KLENLDL 362
L LDL
Sbjct: 365 ASLLTLDL 372
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 74 LNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAEL 133
LN+ +++G+IP E+GDL L LDLS + G IP ++ ++ L I+ +NN L +
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 134 PPIFFF-------YLKVPPTVG-ALPRIPCPPQDTLWLRQKKKAIKLRRFFWH 178
P + F +L P G LPR D Q+ +L ++
Sbjct: 718 PEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENLYFQ 770
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 133/340 (39%), Gaps = 60/340 (17%)
Query: 27 DQQALLALKGHVTDDLAKKLA-RNWDTSSFVCN--WTGITCDVRSQ--RVTALNISGLNL 81
D+QALL +K DL +W ++ CN W G+ CD +Q RV L++SGLNL
Sbjct: 7 DKQALLQIK----KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 82 TGT--IPSELGDLSSLQTLDLS-FHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFF 138
IPS L +L L L + + G IP +I A+L + +
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-----------------AKLTQLHY 105
Query: 139 FYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPXXX 198
Y+ GA+P +L Q K + L + N L+GT+P
Sbjct: 106 LYITHTNVSGAIPD---------FLSQIKTLVTLDFSY-----------NALSGTLPPSI 145
Query: 199 XXXXXXXXXXXXXXXXKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSL 258
G +P + + + + N +IP T + +L + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 259 SVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM 318
S N G G+ + ++L++NSL + ++ L N L L L N
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKN-------LNGLDLRNNR 255
Query: 319 FYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLE 358
YG +P L + L + FN+ G IP+ GN+ + +
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 285 NSL 287
N +
Sbjct: 185 NHI 187
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 130 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 285 NSLQGI 290
N + +
Sbjct: 186 NHISDL 191
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 285 NSL 287
N +
Sbjct: 188 NHI 190
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 152 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 285 NSLQGI 290
N + +
Sbjct: 208 NHISDL 213
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 285 NSLQGI 290
N + +
Sbjct: 188 NHISDL 193
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 127 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 182
Query: 285 NSLQGI 290
N + +
Sbjct: 183 NHISDL 188
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 285 NSL 287
N +
Sbjct: 206 NHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 285 NSL 287
N +
Sbjct: 206 NHI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 285 NSL 287
N +
Sbjct: 206 NHI 208
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 216 GELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLT 275
G LP + ++L L +L L N + R HL+ L + N + +P+ I LT
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 276 KLKSLYLSQNSLQ----GIVNRLSAELPANFYNN 305
L L L QN L+ G +RLS+ A + N
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N S +P + LTKL++LYLS+
Sbjct: 127 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSK 182
Query: 285 NSLQGI 290
N + +
Sbjct: 183 NHISDL 188
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 226 LPFLEILLLDENNFGRRI-PSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
L LE L L +N R + P+T HL TL L G P L L+ LYL
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 285 NSLQGIVNRLSAELPANFYNNIPFLEELYLSKN 317
N+LQ LP N + ++ L L+L N
Sbjct: 138 NNLQA--------LPDNTFRDLGNLTHLFLHGN 162
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 232 LLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIV 291
L LD N F +P LS KHL + LS N S + N+T+L +L LS N L+ I
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 292 NR----------LS------AELPANFYNNIPFLEELYLSKNMFYGD 322
R LS + +P +N++ L L + N Y D
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNT 128
+ VT L + G T +P EL + L +DLS + S S NM+ LL++ + N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 129 LFAELPPIFFFYLK 142
L +PP F LK
Sbjct: 90 LRC-IPPRTFDGLK 102
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284
+LP LE L L N + LSR L TLSL N +P + LTKL++LYLS+
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSK 185
Query: 285 NSLQGI 290
N + +
Sbjct: 186 NHISDL 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 254 QTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ----GIV-------------NRLSA 296
+ L L N S K LTKL+ LYL+ N LQ GI N+L A
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 297 ELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEI-GNMT 355
LP ++ + L EL L +N P + + L LG+N+ ++PK + +T
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157
Query: 356 KLENLDL 362
L+ L L
Sbjct: 158 SLKELRL 164
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 20/144 (13%)
Query: 225 NLPFLEILLLDENNFGRRI-PSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLS 283
L LE L L +N R + P+T L TL L G P L L+ LYL
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 284 QNSLQGIV-----------------NRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD 326
N+LQ + NR+S+ +P + + L+ L L +N P
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHA 195
Query: 327 LANCSYFRILILGFNDFSGAIPKE 350
+ L L N+ S A+P E
Sbjct: 196 FRDLGRLMTLYLFANNLS-ALPTE 218
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 20/144 (13%)
Query: 225 NLPFLEILLLDENNFGRRI-PSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLS 283
L LE L L +N R + P+T L TL L G P L L+ LYL
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 284 QNSLQGIV-----------------NRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD 326
N+LQ + NR+S+ +P + + L+ L L +N P
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 327 LANCSYFRILILGFNDFSGAIPKE 350
+ L L N+ S A+P E
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTE 219
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 229 LEILLLDENNFGRRIPST--------LSRCKHLQTLSLSVNGFSGAIPKEI-GNLTKLKS 279
LEIL L NN R L HL L+L NGF IP E+ +L +LK
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 564
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM 318
+ L N+L LPA+ +NN L+ L L KN+
Sbjct: 565 IDLGLNNLNT--------LPASVFNNQVSLKSLNLQKNL 595
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 229 LEILLLDENNFGRRIPST--------LSRCKHLQTLSLSVNGFSGAIPKEI-GNLTKLKS 279
LEIL L NN R L HL L+L NGF IP E+ +L +LK
Sbjct: 516 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 574
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM 318
+ L N+L LPA+ +NN L+ L L KN+
Sbjct: 575 IDLGLNNLNT--------LPASVFNNQVSLKSLNLQKNL 605
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 218 LPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKL 277
LP ++ N+P L +L+L+ N+ L TLS+S N T L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 278 KSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308
++L LS N L + L +P+ F+ N+ +
Sbjct: 168 QNLQLSSNRLTHVDLSL---IPSLFHANVSY 195
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 229 LEILLLDENNFGRRIPST--------LSRCKHLQTLSLSVNGFSGAIPKEI-GNLTKLKS 279
LEIL L NN R L HL L+L NGF IP E+ +L +LK
Sbjct: 511 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 569
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM 318
+ L N+L LPA+ +NN L+ L L KN+
Sbjct: 570 IDLGLNNLNT--------LPASVFNNQVSLKSLNLQKNL 600
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 254 QTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELY 313
+ LSLS N S +I L++L+ L LS N ++ S + +N LE L
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQD--LEYLD 106
Query: 314 LSKNMFYGDMPSDLANCSYFRILILGFNDFSG-AIPKEIGNMTKLENLDL 362
+S N +A+ R L L FNDF + KE GN+TKL L L
Sbjct: 107 VSHNRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 218 LPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKL 277
LP ++ N+P L +L+L+ N+ L TLS+S N T L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 278 KSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308
++L LS N L + L +P+ F+ N+ +
Sbjct: 174 QNLQLSSNRLTHVDLSL---IPSLFHANVSY 201
>pdb|2FEK|A Chain A, Structure Of A Protein Tyrosine Phosphatase
Length = 167
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 18 SANTTSITTDQQALLALKGHVTDDLAKKLARNWD 51
A+ T+I+ + L+L+GH ++++L RN+D
Sbjct: 64 GADPTAISVAAEHQLSLEGHCARQISRRLCRNYD 97
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 218 LPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEI-GNLTK 276
LP + + L L+ L+L EN + +L L+L+ N ++PK + LT
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTN 158
Query: 277 LKSLYLSQNSLQ----GIVNRLSAELPANFYNN----IP--FLEELYLSKNMFYGDMPSD 326
L L LS N LQ G+ ++L+ Y N +P + L + ++ D P D
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Query: 327 LANCSYFRILILGFNDFSGAIPKEIGNM 354
C R L N SG + G++
Sbjct: 219 -CTCPGIRYLSEWINKHSGVVRNSAGSV 245
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK 276
E+P I +N +L ++ ENN T HL+ L L N E+G
Sbjct: 68 EVPQGIPSNTRYLNLM---ENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---EVGAFNG 121
Query: 277 LKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRIL 336
L SL N+L+ N L+ +P+ + + L EL+L N +PS
Sbjct: 122 LASL----NTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-ESIPS----------- 164
Query: 337 ILGFNDFSGAIPKEIGNMTKLE 358
FN + ++G + KLE
Sbjct: 165 -YAFNRVPSLMRLDLGELKKLE 185
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 252 HLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEE 311
L LSLS N LTKL LYL +N LQ LP ++ + L+E
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--------LPNGVFDKLTQLKE 104
Query: 312 LYLSKNMF 319
L L N
Sbjct: 105 LALDTNQL 112
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 245 STLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGI--VNRLSAELPANF 302
S L+ L +L L+ N + IG LT L +L+LSQN + I + LS A+F
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLSKXDSADF 340
Query: 303 YNNI 306
N +
Sbjct: 341 ANQV 344
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAEL 298
K+L TL L N S P L KL+ LYLS+N L+ + ++ L
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 123
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 71 VTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLF 130
+T L++ G +T + L L++L L LSF+ S S+ N L ++ NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAEL 298
K+L TL L N S P L KL+ LYLS+N L+ + ++ L
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 123
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 71 VTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTL 129
+T L++ G +T + L L++L L LSF+ S S+ N L ++ NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2XWI|A Chain A, Siap R147k Mutant In Complex With Neu5ac
Length = 308
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2WYK|A Chain A, Siap In Complex With Neu5gc
Length = 308
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|3B50|A Chain A, Structure Of H. Influenzae Sialic Acid Binding Protein
Bound To Neu5ac
Length = 310
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2V4C|A Chain A, Structure Of Sialic Acid Binding Protein (Siap) In The
Presence Of Kdn
Length = 309
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2XXK|A Chain A, Siap Complex
Length = 312
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2XWV|A Chain A, Siap Complex
Length = 312
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2CEX|A Chain A, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|B Chain B, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|C Chain C, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|D Chain D, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEY|A Chain A, Apo Structure Of Siap
Length = 306
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2XWK|A Chain A, Siap R147a Mutant In Complex With Neu5ac
Length = 312
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 65/179 (36%), Gaps = 54/179 (30%)
Query: 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVN--------GFSG--- 265
E+P I N L L EN ++ +HL+ L LS N F+G
Sbjct: 57 EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 266 ------------AIPK-EIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEEL 312
IP L+KLK L+L N ++ I P+ +N IP L L
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--------PSYAFNRIPSLRRL 165
Query: 313 ---------YLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362
Y+S+ F G L+N Y + + + P + KL+ LDL
Sbjct: 166 DLGELKRLSYISEGAFEG-----LSNLRYLNLAMCNLREIPNLTP-----LIKLDELDL 214
>pdb|2WX9|A Chain A, Crystal Structure Of The Sialic Acid Binding Periplasmic
Protein Siap
pdb|2WYP|A Chain A, Crystal Structure Of Sialic Acid Binding Protein
pdb|2XA5|A Chain A, Structure Of Substrate Binding Protein Siap (A11n) In
Complex With Neu5ac
Length = 312
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2XWO|A Chain A, Siap R147e Mutant In Complex With Sialylamide
Length = 312
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFL--------EELYLSKNMFYGDMPSDL 327
L L N++ G N L+A FY FL ++LYL N Y ++P DL
Sbjct: 175 LALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDL 230
>pdb|2RL3|B Chain B, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 248
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 267 IPKEIGNLTKLKSL----YLSQNSLQGIVN-RLSAELPANFYNNIPFLEELYLSK 316
I +E+G + K L Y +QN GI L +L + N + FLE LYL+K
Sbjct: 105 IAREVGEVRMQKYLKKFSYGNQNISGGIDKFHLEGQLRISAVNQVEFLESLYLNK 159
>pdb|2RL3|A Chain A, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 247
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 267 IPKEIGNLTKLKSL----YLSQNSLQGIVN-RLSAELPANFYNNIPFLEELYLSK 316
I +E+G + K L Y +QN GI L +L + N + FLE LYL+K
Sbjct: 106 IAREVGEVRMQKYLKKFSYGNQNISGGIDKFHLEGQLRISAVNQVEFLESLYLNK 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,433,656
Number of Sequences: 62578
Number of extensions: 350856
Number of successful extensions: 1041
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 188
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)