Query 037313
Match_columns 362
No_of_seqs 250 out of 3649
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-40 3E-45 339.6 24.8 323 24-361 27-362 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-32 2.6E-37 281.3 18.9 278 70-362 141-435 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.1E-28 4.6E-33 219.3 7.5 272 68-362 77-348 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.3E-29 1.4E-33 222.6 2.9 283 68-362 124-423 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.9E-29 1.9E-33 223.6 -3.8 264 69-360 7-296 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-27 4.1E-32 215.1 -3.3 276 69-362 78-369 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 7.1E-27 1.5E-31 200.9 -6.1 208 70-290 92-312 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 7E-27 1.5E-31 201.0 -10.0 259 69-361 45-303 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.4E-25 193.4 19.3 259 70-362 612-900 (1153)
10 PLN03210 Resistant to P. syrin 99.8 2.1E-19 4.6E-24 185.1 20.4 257 70-362 590-876 (1153)
11 PRK15387 E3 ubiquitin-protein 99.8 1.2E-19 2.5E-24 175.2 13.8 125 203-353 343-467 (788)
12 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 175.3 11.5 182 69-288 178-359 (754)
13 PRK15370 E3 ubiquitin-protein 99.8 3.3E-19 7.3E-24 172.9 10.6 227 68-344 198-428 (754)
14 cd00116 LRR_RI Leucine-rich re 99.8 1.6E-20 3.4E-25 168.6 -0.4 180 179-361 109-313 (319)
15 KOG0618 Serine/threonine phosp 99.8 2.3E-20 5E-25 176.1 -3.9 260 68-359 218-504 (1081)
16 KOG4237 Extracellular matrix p 99.8 6.6E-20 1.4E-24 158.0 -1.0 254 68-344 66-359 (498)
17 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.4E-25 177.2 -5.3 249 68-341 240-510 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-20 1.5E-24 164.4 -1.5 261 69-343 23-319 (319)
19 PRK15387 E3 ubiquitin-protein 99.7 8.7E-17 1.9E-21 155.5 13.8 232 70-362 202-452 (788)
20 KOG0617 Ras suppressor protein 99.7 2E-19 4.4E-24 138.2 -3.8 154 68-239 32-185 (264)
21 KOG0617 Ras suppressor protein 99.7 2.1E-19 4.6E-24 138.1 -4.9 158 88-288 28-186 (264)
22 KOG4237 Extracellular matrix p 99.6 4.1E-17 8.9E-22 140.9 0.4 261 77-362 54-353 (498)
23 PLN03150 hypothetical protein; 99.5 6.5E-14 1.4E-18 135.5 12.0 128 21-164 367-503 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 1.4E-14 3.1E-19 130.8 -3.6 172 168-357 88-259 (722)
25 KOG1909 Ran GTPase-activating 99.4 6.8E-14 1.5E-18 119.4 0.1 239 68-344 29-311 (382)
26 KOG0532 Leucine-rich repeat (L 99.2 1.9E-13 4.2E-18 123.6 -4.8 176 91-289 73-248 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.8E-11 4E-16 113.1 7.9 176 90-287 113-289 (394)
28 KOG3207 Beta-tubulin folding c 99.2 1.4E-12 3.1E-17 114.5 0.4 162 176-344 170-339 (505)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.6E-11 3.5E-16 98.3 6.2 82 202-288 19-101 (175)
30 COG4886 Leucine-rich repeat (L 99.2 4.8E-11 1E-15 110.4 7.7 197 97-324 97-294 (394)
31 KOG1909 Ran GTPase-activating 99.2 1.9E-12 4E-17 110.8 -2.5 246 86-362 23-305 (382)
32 PLN03150 hypothetical protein; 99.1 3E-10 6.5E-15 110.2 9.1 106 229-342 420-526 (623)
33 KOG1259 Nischarin, modulator o 99.1 2.9E-11 6.3E-16 101.7 1.7 129 202-345 284-413 (490)
34 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 108.2 -1.1 178 176-360 144-331 (505)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 92.4 4.9 85 177-264 41-126 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.9 3.8E-10 8.3E-15 112.1 2.2 178 69-264 545-730 (889)
37 KOG1259 Nischarin, modulator o 98.9 2.4E-10 5.2E-15 96.2 0.4 123 225-361 282-405 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.8E-14 71.2 4.1 61 275-343 1-61 (61)
39 KOG2120 SCF ubiquitin ligase, 98.9 6.2E-11 1.3E-15 99.6 -4.7 203 68-285 135-348 (419)
40 KOG0531 Protein phosphatase 1, 98.8 4E-10 8.7E-15 104.5 -0.8 240 70-345 73-319 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.1E-14 69.4 3.8 58 228-285 2-59 (61)
42 COG5238 RNA1 Ran GTPase-activa 98.8 8.4E-10 1.8E-14 91.7 -0.1 239 69-345 30-317 (388)
43 KOG4658 Apoptotic ATPase [Sign 98.8 4.9E-09 1.1E-13 104.4 5.0 201 69-289 523-731 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 2E-09 4.2E-14 90.7 -6.4 181 152-342 186-374 (419)
45 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.5E-13 93.9 -1.1 197 115-345 70-269 (414)
46 KOG2982 Uncharacterized conser 98.4 2.7E-08 5.7E-13 84.0 -0.9 202 152-361 72-285 (418)
47 KOG2982 Uncharacterized conser 98.4 4.5E-08 9.8E-13 82.6 -0.1 203 91-337 69-285 (418)
48 PF08263 LRRNT_2: Leucine rich 98.4 4.5E-07 9.7E-12 54.7 3.2 40 25-65 2-43 (43)
49 KOG4579 Leucine-rich repeat (L 98.3 3.4E-08 7.5E-13 73.8 -3.0 83 201-286 52-134 (177)
50 KOG1859 Leucine-rich repeat pr 98.2 1.4E-08 3.1E-13 95.2 -7.8 130 177-320 163-292 (1096)
51 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 6.9E-13 92.9 -6.8 126 153-288 166-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1.5E-07 3.2E-12 78.6 -2.4 197 69-265 58-286 (388)
53 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 5.8E-12 69.1 -1.8 134 203-349 28-164 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 4.1E-06 8.8E-11 50.6 2.9 38 93-131 1-38 (44)
55 KOG3665 ZYG-1-like serine/thre 98.0 1.9E-06 4.1E-11 84.0 1.2 143 177-323 121-266 (699)
56 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.5E-10 49.7 2.9 38 307-345 1-38 (44)
57 KOG3665 ZYG-1-like serine/thre 97.9 3.2E-06 6.9E-11 82.5 1.1 152 69-234 122-282 (699)
58 KOG1644 U2-associated snRNP A' 97.8 4.9E-05 1.1E-09 61.1 6.1 126 205-341 22-150 (233)
59 KOG4341 F-box protein containi 97.8 4.6E-07 9.9E-12 80.1 -6.0 260 68-341 137-436 (483)
60 PRK15386 type III secretion pr 97.7 0.00023 5.1E-09 64.5 8.7 136 175-341 49-187 (426)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00017 3.6E-09 55.2 6.4 120 225-358 10-129 (129)
62 PRK15386 type III secretion pr 97.6 0.00046 1E-08 62.6 9.9 32 227-261 156-187 (426)
63 KOG1644 U2-associated snRNP A' 97.6 9.6E-05 2.1E-09 59.4 4.9 59 70-130 43-101 (233)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00065 1.4E-08 51.9 6.2 122 197-333 7-128 (129)
65 KOG4341 F-box protein containi 97.3 1.2E-05 2.6E-10 71.4 -4.6 253 68-338 163-459 (483)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00033 7.2E-09 58.7 1.8 40 199-239 62-103 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.0013 2.8E-08 55.2 3.5 113 85-235 35-151 (260)
68 KOG2123 Uncharacterized conser 96.7 3.9E-05 8.5E-10 64.7 -6.0 58 68-129 18-75 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.00034 7.3E-09 66.4 -2.6 18 271-288 358-375 (482)
70 KOG2123 Uncharacterized conser 96.3 0.00017 3.6E-09 61.0 -4.5 61 225-287 39-100 (388)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.0025 5.4E-08 31.9 1.2 20 333-353 2-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0028 6.1E-08 31.8 0.6 18 95-113 2-19 (22)
73 KOG4308 LRR-containing protein 95.5 4.2E-05 9.1E-10 71.6 -13.0 189 71-265 89-304 (478)
74 KOG1947 Leucine rich repeat pr 95.4 0.0015 3.3E-08 62.0 -3.1 169 150-319 187-374 (482)
75 KOG3864 Uncharacterized conser 93.9 0.0073 1.6E-07 48.9 -1.9 83 251-340 101-185 (221)
76 PF13504 LRR_7: Leucine rich r 93.5 0.051 1.1E-06 25.2 1.3 13 332-344 2-14 (17)
77 KOG4308 LRR-containing protein 93.3 0.00053 1.2E-08 64.3 -10.9 190 151-345 87-304 (478)
78 KOG3864 Uncharacterized conser 91.4 0.025 5.5E-07 45.9 -2.0 35 179-213 102-136 (221)
79 smart00370 LRR Leucine-rich re 91.0 0.21 4.6E-06 25.9 2.0 21 202-223 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 91.0 0.21 4.6E-06 25.9 2.0 21 202-223 2-22 (26)
81 PF13516 LRR_6: Leucine Rich r 90.7 0.074 1.6E-06 27.1 0.0 15 331-345 2-16 (24)
82 KOG0473 Leucine-rich repeat pr 88.9 0.0099 2.2E-07 49.3 -6.2 84 68-164 41-124 (326)
83 KOG0473 Leucine-rich repeat pr 83.0 0.03 6.4E-07 46.6 -6.3 35 309-344 90-124 (326)
84 KOG3763 mRNA export factor TAP 78.0 1.4 3E-05 41.6 1.9 37 249-285 216-254 (585)
85 smart00365 LRR_SD22 Leucine-ri 77.7 2.2 4.8E-05 22.2 1.8 14 93-106 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 75.3 1.8 3.8E-05 22.5 1.0 17 332-349 3-19 (26)
87 smart00368 LRR_RI Leucine rich 71.7 3.6 7.8E-05 21.7 1.8 14 93-106 2-15 (28)
88 KOG3763 mRNA export factor TAP 67.0 4.1 8.9E-05 38.6 2.2 84 149-233 216-307 (585)
89 KOG4242 Predicted myosin-I-bin 62.2 23 0.00051 33.1 6.0 65 68-134 164-231 (553)
90 smart00367 LRR_CC Leucine-rich 50.7 12 0.00025 19.2 1.4 13 116-128 1-13 (26)
91 PF08139 LPAM_1: Prokaryotic m 37.9 31 0.00068 17.8 1.7 14 2-15 8-21 (25)
92 KOG4242 Predicted myosin-I-bin 32.1 44 0.00096 31.4 2.9 140 203-349 215-372 (553)
93 KOG1665 AFH1-interacting prote 29.8 60 0.0013 27.1 3.0 12 228-239 197-208 (302)
94 PRK09810 entericidin A; Provis 24.6 99 0.0021 18.2 2.5 21 1-21 1-21 (41)
95 TIGR00864 PCC polycystin catio 21.3 64 0.0014 37.5 2.2 32 184-215 1-32 (2740)
96 PF12393 Dr_adhesin: Dr family 21.2 1.2E+02 0.0027 14.8 2.5 19 1-19 1-19 (21)
97 TIGR00864 PCC polycystin catio 21.2 69 0.0015 37.2 2.4 32 257-288 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-40 Score=339.56 Aligned_cols=323 Identities=37% Similarity=0.509 Sum_probs=234.2
Q ss_pred chhHHHHHHHHHhcCCCCccchhcCCCCCCCCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCC
Q 037313 24 ITTDQQALLALKGHVTDDLAKKLARNWDTSSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFH 103 (362)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 103 (362)
.+.|..++++|++.+ .++.+.. .+|....++|.|.|++|+. .++|+.|+++++++++.++..+..+++|++|++++|
T Consensus 27 ~~~~~~~l~~~~~~~-~~~~~~~-~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSI-NDPLKYL-SNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhC-CCCcccC-CCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 346899999999998 4666666 8998888999999999986 679999999999999999999999999999999999
Q ss_pred cccccCCcccc-CCCCCcEEEccCCCCcccCCccc------------cccccCCcccCCCCCCCCCCCCCccccccCCcc
Q 037313 104 WFSGSIPASIY-NMSSLLSINFTNNTLFAELPPIF------------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAI 170 (362)
Q Consensus 104 ~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~------------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 170 (362)
++.+.+|..+. .+++|++|++++|++++.+|... .....+|..++++++|++|++++|.+. +.+
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~---~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV---GKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc---ccC
Confidence 99999998766 89999999999999988777522 122356677777888888888888776 566
Q ss_pred cccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCC
Q 037313 171 KLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRC 250 (362)
Q Consensus 171 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 250 (362)
|..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|..+..+
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCC
Confidence 66777777777777777777777777777777777777777777766776664 67777777777777777777777777
Q ss_pred CCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCC
Q 037313 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANC 330 (362)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 330 (362)
++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+ .+|..+ ..+++|+.|++++|.+.+..|..+..+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-------EIPELV-IQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc-------CCChhH-cCCCCCcEEECCCCccCCcCChhHhcC
Confidence 777777777777776777777777777777777776643 222222 122444444444444444444444444
Q ss_pred CCCceEEecccccccccccccccCCCCCeee
Q 037313 331 SYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
++|+.|++++|.+++.+|..++.+++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 4444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-32 Score=281.33 Aligned_cols=278 Identities=31% Similarity=0.452 Sum_probs=144.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
++++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++. +|..+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----------~p~~l~~ 210 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ----------IPRELGQ 210 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc----------CChHHcC
Confidence 344444444444444555555555555555555555555555555555555555555555544 3444444
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
+++|+.|++++|.+. +.++..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+. .+++|
T Consensus 211 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 286 (968)
T PLN00113 211 MKSLKWIYLGYNNLS---GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKL 286 (968)
T ss_pred cCCccEEECcCCccC---CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCc
Confidence 555555555555444 34444444445555555555555444454455555555555555554444444443 44455
Q ss_pred cEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcc-----------------c
Q 037313 230 EILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIV-----------------N 292 (362)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------~ 292 (362)
++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 55555555444444444444445555555555444444444444444455554444443210 0
Q ss_pred ccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 293 RLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.+.+.+|..+.. +++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 367 ~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 367 NLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred eeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 111234443333 255666666666666666666666677777777777777667777777777776654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-28 Score=219.27 Aligned_cols=272 Identities=22% Similarity=0.189 Sum_probs=226.4
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+...+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|+.. -.+.+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv----------~se~L 145 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV----------TSEEL 145 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccc----------cHHHH
Confidence 456788999999999777778999999999999999998 7887766778899999999998764 34568
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
..++.|+.++++.|.++ ..-...+..-.++++|++++|+|+......|.++.+|..|.++.|+++ .+|...|..++
T Consensus 146 ~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~ 221 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLP 221 (873)
T ss_pred HhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcc
Confidence 88999999999999997 333344555678999999999999888889999999999999999999 99999998899
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcC
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIP 307 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 307 (362)
+|+.|++..|++.-.-...|..+++|+.|.|.+|.+..-...+|..+.++++|+|+.|+++ .+..++.-.+.
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~--------~vn~g~lfgLt 293 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ--------AVNEGWLFGLT 293 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh--------hhhcccccccc
Confidence 9999999999885433455788999999999999998777778888999999999999887 44444444457
Q ss_pred CCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 308 FLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 308 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.|+.|++++|.|....++.++-.++|+.|+|++|+++.-.+..|..+..|++|+|
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 8888888888888777888888888888888888888666667777777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=6.3e-29 Score=222.65 Aligned_cols=283 Identities=21% Similarity=0.217 Sum_probs=212.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
.++++.|+|..|.|+..-.+.+.-++.||+|||+.|.++..--.++.+-.++++|++++|.|+..--..+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 5789999999999886656677778888888888887774444556666777888888777754321111
Q ss_pred ---cccccCCc-ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCc
Q 037313 138 ---FFYLKVPP-TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNN 213 (362)
Q Consensus 138 ---~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 213 (362)
+....+|. .|.++++|+.|++..|.+. ..--..+.+++.|+.|.+.+|.++..-...|..+.++++|++..|+
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~ir---ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIR---IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccccee---eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 11122443 3556888888888888875 2223456677888888888888887777778888999999999998
Q ss_pred CcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccc
Q 037313 214 LKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNR 293 (362)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (362)
+...-..+++ +++.|+.|+++.|.+....+..+..+++|++|+|+.|+++.-.+..|..++.|++|.|++|.++
T Consensus 281 l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~----- 354 (873)
T KOG4194|consen 281 LQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID----- 354 (873)
T ss_pred hhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-----
Confidence 8843344555 8899999999999988888888888899999999999998777788888888889999988876
Q ss_pred cccccChhhhcCcCCCcEEeccCCcccccCC---ccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 294 LSAELPANFYNNIPFLEELYLSKNMFYGDMP---SDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.+.+..+..+++|++|||++|.++..+. ..|..+++|+.|++.+|++....-..|.+++.||.|||
T Consensus 355 ---~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 355 ---HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred ---HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 5566666667888888888888765443 34667888888888888887544457888888888875
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.9e-29 Score=223.56 Aligned_cols=264 Identities=25% Similarity=0.381 Sum_probs=166.5
Q ss_pred CcEEEEEcCCCCCc-ccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 69 QRVTALNISGLNLT-GTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 69 ~~l~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+-|+..|+++|.++ +..|.....|++++.|.|...++. .+|+.++.+.+|++|.+++|+++. +-..+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-----------vhGEL 74 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-----------VHGEL 74 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-----------hhhhh
Confidence 45788889999888 558888888888888888887776 788888888888888888888754 33445
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
..++.|+.+.+..|++.+ ..+|..+..+..|..|++++|++. ++|..+..-+++-.|++++|++. .||..++.+++
T Consensus 75 s~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhH
Confidence 556666666666666543 455666666666666666666665 45665655566666666666665 56665555566
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccc-------------------------cccCccccCCCCCCEEeC
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFS-------------------------GAIPKEIGNLTKLKSLYL 282 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~L 282 (362)
.|-.|+++.|++ ..+|..+..+.+|++|++++|.+. ..+|..+..+.+|..+|+
T Consensus 151 DLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 666666666655 334444555555555555555432 124555555566666666
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCee
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENL 360 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 360 (362)
+.|++. .+|..+... ++|+.|+|++|+|+ .+....+.+.+|++|++++|+++ .+|++++++++|+.|
T Consensus 230 S~N~Lp--------~vPecly~l-~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 230 SENNLP--------IVPECLYKL-RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred cccCCC--------cchHHHhhh-hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 666654 445554443 66666666666665 44444455555666666666665 556666655555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.9e-27 Score=215.06 Aligned_cols=276 Identities=25% Similarity=0.332 Sum_probs=203.3
Q ss_pred CcEEEEEcCCCCCcc-cCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 69 QRVTALNISGLNLTG-TIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
++++.++++.|++.. -+|+.+-++..|+.|||++|+++ +.|..+..-+++-+|++++|+|. .||..+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 344455555555442 24445555555555555555554 44555555555555555555542 233322
Q ss_pred ----cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccc-cccCccccCcCCCcEEEeecC
Q 037313 138 ----FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLT-GTIPSSIFNLSSLSNLDLSYN 212 (362)
Q Consensus 138 ----~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n 212 (362)
+.--.+|+.+..+.+|++|.+++|++. ..-...+..++.|+.|.+++..-+ ..+|.++..+.+|+.+|++.|
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 111227888888888899999988775 222233445677888888876644 458899999999999999999
Q ss_pred cCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccc
Q 037313 213 NLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVN 292 (362)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (362)
++. .+|..+. .+++|+.|++++|.++. +.-....-.+|++|++++|+++ .+|.++..++.|+.|.+.+|+++.
T Consensus 233 ~Lp-~vPecly-~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F--- 305 (1255)
T KOG0444|consen 233 NLP-IVPECLY-KLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF--- 305 (1255)
T ss_pred CCC-cchHHHh-hhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc---
Confidence 998 8999888 89999999999999864 3333455678999999999999 889999999999999999999873
Q ss_pred ccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 293 RLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
..+|+++... .+|+++..++|.+. .+|+.++.+..|+.|.|+.|.+- ++|+.+.-++.|+.||+
T Consensus 306 ---eGiPSGIGKL-~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 306 ---EGIPSGIGKL-IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred ---cCCccchhhh-hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 3688887654 88999999999885 88999999999999999999888 78999999999998885
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=7.1e-27 Score=200.95 Aligned_cols=208 Identities=27% Similarity=0.348 Sum_probs=162.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc------------
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF------------ 137 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~------------ 137 (362)
.++.++.+.|+++ .+|+.+..+..|+.+++++|.+. ++|++++.+..|+.++..+|+++.. |..+
T Consensus 92 ~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 92 ALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhcc
Confidence 4566788888887 78888888888888888888887 6777888888888888888887653 3322
Q ss_pred -cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc
Q 037313 138 -FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG 216 (362)
Q Consensus 138 -~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (362)
+-....|+..-+++.|++++...|.+ +.+|..++.+.+|..|++.+|++. .+| +|.+|..|+++.++.|.+.
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L----~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~- 241 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLL----ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE- 241 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhh----hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-
Confidence 11223455555577777777777776 678888888889999999999887 566 7888888888888888887
Q ss_pred cCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCc
Q 037313 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
.+|...+..++.+..||+++|++ ...|..+..+++|+.||+++|.++ .+|..++++ +|+.|.+.+|.+..+
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred hhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence 78888877888888888888888 467888888888888888888888 667778887 888888888876443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=7e-27 Score=201.01 Aligned_cols=259 Identities=28% Similarity=0.371 Sum_probs=226.9
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
..++.++++.|.++ .+.+.+.++..|.+|++.+|++. ++|.+++.+.+++.+++++|++.. +|+.++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-----------lp~~i~ 111 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-----------LPEQIG 111 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-----------ccHHHh
Confidence 35788899999988 66677889999999999999988 788899999999999999999865 899999
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
.+.++.+++.++|.+ ..++..++.+..++.++..+|.++ .+|+.++++.++..+++.+|.+. ..|+... +++.
T Consensus 112 s~~~l~~l~~s~n~~----~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~ 184 (565)
T KOG0472|consen 112 SLISLVKLDCSSNEL----KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKR 184 (565)
T ss_pred hhhhhhhhhccccce----eecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHH
Confidence 999999999999987 567777888888999999999988 67888999999999999999998 7777665 5889
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++++...|-+ +.+|..++.+.+|+-|++.+|.+. ..| +|..+..|.+++++.|.+. .+|+.....+++
T Consensus 185 L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~--------~lpae~~~~L~~ 253 (565)
T KOG0472|consen 185 LKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE--------MLPAEHLKHLNS 253 (565)
T ss_pred HHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH--------hhHHHHhccccc
Confidence 99999988877 678889999999999999999998 667 7888999999999999887 888888888899
Q ss_pred CcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeee
Q 037313 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
+..||+..|+++ +.|..++-+.+|++||+++|.++ .+|..++++ +|+.|.
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 999999999997 88999999999999999999999 688888888 776653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.5e-20 Score=193.44 Aligned_cols=259 Identities=20% Similarity=0.238 Sum_probs=152.9
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
++++|+++++.+. .++..+..+++|++|+++++.....+| .++.+++|++|++++|..... +|..+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~----------lp~si~~ 679 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVE----------LPSSIQY 679 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccc----------cchhhhc
Confidence 4455555555544 344455555566666665554333444 255555666666655544333 5566666
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHH-------
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANI------- 222 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------- 222 (362)
+++|+.|++++|..- ..+|... .+++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+
T Consensus 680 L~~L~~L~L~~c~~L---~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~ 751 (1153)
T PLN03210 680 LNKLEDLDMSRCENL---EILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDE 751 (1153)
T ss_pred cCCCCEEeCCCCCCc---CccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccccc
Confidence 667777776665322 3333322 4556666666665433333321 234555555555544 333221
Q ss_pred ----------------------hhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEE
Q 037313 223 ----------------------CNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSL 280 (362)
Q Consensus 223 ----------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (362)
....++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 1123456667777766556667777777777777777765544566554 56777777
Q ss_pred eCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccc-ccccccccccccCCCCCe
Q 037313 281 YLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFN-DFSGAIPKEIGNMTKLEN 359 (362)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 359 (362)
++++|..- ..+|. ...+|+.|++++|.++ .+|.++..+++|++|++++| ++. .+|..+..+++|+.
T Consensus 831 ~Ls~c~~L-------~~~p~----~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 831 DLSGCSRL-------RTFPD----ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLET 897 (1153)
T ss_pred ECCCCCcc-------ccccc----cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCe
Confidence 77776421 12332 1256888888888886 67888888999999999886 454 57777777777776
Q ss_pred eeC
Q 037313 360 LDL 362 (362)
Q Consensus 360 L~l 362 (362)
+++
T Consensus 898 L~l 900 (1153)
T PLN03210 898 VDF 900 (1153)
T ss_pred eec
Confidence 653
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.1e-19 Score=185.11 Aligned_cols=257 Identities=21% Similarity=0.214 Sum_probs=186.5
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|++|+++++...+. +| .+..
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~----------ip-~ls~ 655 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKE----------IP-DLSM 655 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCc----------CC-cccc
Confidence 4666666666665 566655 4577888888887766 5677777788888888887765444 33 3667
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
+++|+.|++++|..- ..+|..+..+++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|. ..++|
T Consensus 656 l~~Le~L~L~~c~~L---~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL 727 (1153)
T PLN03210 656 ATNLETLKLSDCSSL---VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNI 727 (1153)
T ss_pred CCcccEEEecCCCCc---cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCc
Confidence 788888888887654 5667777788888888888876555666654 678888888888765545553 34578
Q ss_pred cEEEcccCcccccCCccc------------------------------cCCCCCCeEEccccccccccCccccCCCCCCE
Q 037313 230 EILLLDENNFGRRIPSTL------------------------------SRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKS 279 (362)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (362)
++|++++|.+. .+|..+ ...++|+.|++++|.....+|..++++++|+.
T Consensus 728 ~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 728 SWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred CeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 88888888764 334321 11357888888888877788989999999999
Q ss_pred EeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCe
Q 037313 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLEN 359 (362)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 359 (362)
|++++|..- +.+|... .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|.++..+++|+.
T Consensus 807 L~Ls~C~~L-------~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~ 873 (1153)
T PLN03210 807 LEIENCINL-------ETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSF 873 (1153)
T ss_pred EECCCCCCc-------CeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCE
Confidence 999987421 2566554 4588999999998654455543 357899999999998 78999999999998
Q ss_pred eeC
Q 037313 360 LDL 362 (362)
Q Consensus 360 L~l 362 (362)
|++
T Consensus 874 L~L 876 (1153)
T PLN03210 874 LDM 876 (1153)
T ss_pred EEC
Confidence 864
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.2e-19 Score=175.24 Aligned_cols=125 Identities=26% Similarity=0.268 Sum_probs=84.8
Q ss_pred CCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeC
Q 037313 203 SLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYL 282 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 282 (362)
+|++|++++|+++ .+|. ..++|+.|++++|.++. +|.. ..+|+.|++++|.++ .+|.. .++|+.|++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred ccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 5666666666666 4443 23456666666666643 4432 246778888888777 34533 256788888
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccccccccccc
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGN 353 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 353 (362)
++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+..+..
T Consensus 410 S~N~Ls--------sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 410 SGNRLT--------SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cCCcCC--------CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 888776 34432 245788888888887 77888888889999999999998876665533
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.5e-19 Score=175.32 Aligned_cols=182 Identities=23% Similarity=0.314 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+.+.|++++++++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++. +|..+.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-----------LP~~l~ 240 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-----------IPATLP 240 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-----------CChhhh
Confidence 34567777777766 4565443 36777777777766 4555443 467777777776653 333222
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
++|+.|++++|.+.. +|..+ ...|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++
T Consensus 241 --~~L~~L~Ls~N~L~~----LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~s 305 (754)
T PRK15370 241 --DTIQEMELSINRITE----LPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SG 305 (754)
T ss_pred --ccccEEECcCCccCc----CChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hh
Confidence 245566666665531 22222 134566666666555 2444332 35566666666555 3443221 23
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 306 L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 306 ITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred HHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC
Confidence 4555555555432 23222 134555555555544 2333331 34555555555443
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.3e-19 Score=172.94 Aligned_cols=227 Identities=22% Similarity=0.367 Sum_probs=178.1
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+..++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|++|++++|.+.. +|..+
T Consensus 198 p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-----------LP~~l 260 (754)
T PRK15370 198 PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-----------LPERL 260 (754)
T ss_pred ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-----------CChhH
Confidence 457999999999999 6777554 58999999999998 6776554 479999999999863 45444
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
. .+|+.|++++|.+.. +|..+ .+.|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+ .+
T Consensus 261 ~--s~L~~L~Ls~N~L~~----LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~ 325 (754)
T PRK15370 261 P--SALQSLDLFHNKISC----LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PP 325 (754)
T ss_pred h--CCCCEEECcCCccCc----ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cc
Confidence 3 479999999998862 34333 2589999999999984 555443 47999999999998 677544 36
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcC
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIP 307 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 307 (362)
+|++|++++|.++. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. .
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt--------~LP~~l~---~ 388 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT--------NLPENLP---A 388 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC--------CCCHhHH---H
Confidence 89999999999865 665553 79999999999998 5676553 68999999999987 5666554 3
Q ss_pred CCcEEeccCCcccccCCccc----cCCCCCceEEecccccc
Q 037313 308 FLEELYLSKNMFYGDMPSDL----ANCSYFRILILGFNDFS 344 (362)
Q Consensus 308 ~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~l~ 344 (362)
.|+.|++++|++. .+|..+ ...+++..+++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5999999999997 555544 34578899999999986
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=1.6e-20 Score=168.62 Aligned_cols=180 Identities=24% Similarity=0.250 Sum_probs=99.3
Q ss_pred CCcEEecCCcccccc----cCccccCc-CCCcEEEeecCcCcccCchH---HhhCCCCCcEEEcccCccccc----CCcc
Q 037313 179 EKKRVMAKNNFLTGT----IPSSIFNL-SSLSNLDLSYNNLKGELPAN---ICNNLPFLEILLLDENNFGRR----IPST 246 (362)
Q Consensus 179 ~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~~~~~----~~~~ 246 (362)
+|++|++++|.+++. +...+..+ ++|+.|++++|.+++..... .+..+++|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 366666666665521 22334455 67777777777766322211 122455677777777766532 2233
Q ss_pred ccCCCCCCeEEccccccccc----cCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc-
Q 037313 247 LSRCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG- 321 (362)
Q Consensus 247 l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~- 321 (362)
+..+++|++|++++|.+++. +...+..+++|+.|++++|.+++... ..+...+....+.|++|++++|.++.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~---~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA---AALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH---HHHHHHHhccCCCceEEEccCCCCCcH
Confidence 44556777777777776533 23344556777777777776653110 01111111112567778887777751
Q ss_pred ---cCCccccCCCCCceEEecccccccc----cccccccC-CCCCeee
Q 037313 322 ---DMPSDLANCSYFRILILGFNDFSGA----IPKEIGNM-TKLENLD 361 (362)
Q Consensus 322 ---~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~ 361 (362)
.+...+..+++|+++++++|.++.. +...+... +.|+.++
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 2334455567777788888777743 33333333 4555554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.3e-20 Score=176.09 Aligned_cols=260 Identities=25% Similarity=0.263 Sum_probs=177.2
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++.|+.+.|.++ .+...+ .-.+|+++++++|+++ .+|+.++.+.+|+.++..+|.++. +|..+
T Consensus 218 g~~l~~L~a~~n~l~-~~~~~p-~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-----------lp~ri 283 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLT-TLDVHP-VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-----------LPLRI 283 (1081)
T ss_pred CcchheeeeccCcce-eecccc-ccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-----------hHHHH
Confidence 345666666666666 222222 2247899999999888 577788889999999999998854 77777
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccc-c-------------------------Cc
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSI-F-------------------------NL 201 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~-------------------------~l 201 (362)
...++|+++.+.+|.+ ..++........|++|++..|.+.. +|+.+ . .+
T Consensus 284 ~~~~~L~~l~~~~nel----~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNEL----EYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hhhhhHHHHHhhhhhh----hhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 7888888888888877 4666667777788888888877653 22211 1 23
Q ss_pred CCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEe
Q 037313 202 SSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLY 281 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (362)
+.|+.|.+.+|.+++..-+-+- ++++||.|+++.|++.......+.++..|++|++|+|.++ .+|..+..++.|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 4566677777777765555443 6778888888888774433344677778888888888887 6777777788888888
Q ss_pred CcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc-CCccccCCCCCceEEecccccccccccccccCCCCCe
Q 037313 282 LSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD-MPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLEN 359 (362)
Q Consensus 282 L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 359 (362)
..+|.+. .+| .+.. ++.|+.+|++.|+++.. +|... ..++|++||+++|.-....-..+..++++..
T Consensus 437 ahsN~l~--------~fP-e~~~-l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 437 AHSNQLL--------SFP-ELAQ-LPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred hcCCcee--------ech-hhhh-cCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhh
Confidence 8887765 455 4443 38899999999988743 34333 3488999999998632222233444444433
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=6.6e-20 Score=157.96 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=191.2
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccC-CCCcccCCccccccccCCc-
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTN-NTLFAELPPIFFFYLKVPP- 145 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~~~- 145 (362)
+...++|+|..|+|+..-|.+|+.+++||.|||+.|.|+..-|++|..+++|..|-+.+ |+|+. +|.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-----------l~k~ 134 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-----------LPKG 134 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-----------hhhh
Confidence 56789999999999955556999999999999999999988999999999988877766 77765 444
Q ss_pred ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCccc--------
Q 037313 146 TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGE-------- 217 (362)
Q Consensus 146 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-------- 217 (362)
.|+++..++.|.+.-|.+. -.....+..++++..|.+..|.+...--.++..+..++.+.+..|.+...
T Consensus 135 ~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred HhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 4778888888888888776 44455566788889999999988754444777888888888777652110
Q ss_pred ----CchHHhhCCCC----------------------CcEE--Eccc-CcccccCC-ccccCCCCCCeEEcccccccccc
Q 037313 218 ----LPANICNNLPF----------------------LEIL--LLDE-NNFGRRIP-STLSRCKHLQTLSLSVNGFSGAI 267 (362)
Q Consensus 218 ----~~~~~~~~l~~----------------------L~~L--~l~~-n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 267 (362)
.|... .+..- ++.+ .+.. +..-..-| ..|..+++|++|++++|.+++.-
T Consensus 212 ~~a~~~iet-sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 212 DLAMNPIET-SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred HHhhchhhc-ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 00000 01110 1111 0111 11111222 23577899999999999999888
Q ss_pred CccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccc
Q 037313 268 PKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 268 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
+.+|.....++.|.|.+|++. .+....+..+..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~--------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLE--------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcchhhhhhhhcCcchHH--------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 899999999999999999987 566677777899999999999999888999999999999999888774
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1.6e-20 Score=177.24 Aligned_cols=249 Identities=27% Similarity=0.328 Sum_probs=201.1
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+.+++.++++.++++ .+|+.++.+.+|+.++..+|.++ .+|..+..+.+|++|++..|.+.- +|+..
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-----------ip~~l 306 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-----------IPPFL 306 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-----------CCCcc
Confidence 678999999999998 67888999999999999999995 788888888888888888888744 77778
Q ss_pred CCCCCCCCCCCCCccccccCC---------------------cc-cccccccCCCcEEecCCcccccccCccccCcCCCc
Q 037313 148 GALPRIPCPPQDTLWLRQKKK---------------------AI-KLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLS 205 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~---------------------~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 205 (362)
+..+.|++|++..|.+..... .. ...-..++.|+.|++.+|.++...-+.+.++++|+
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 888888888888887653211 00 01112346688899999999988888899999999
Q ss_pred EEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCC
Q 037313 206 NLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (362)
.|++++|++. .+|......++.|++|++++|.++ .+|..+.+++.|++|....|.+. ..| .+.+++.|+.+|++.|
T Consensus 387 VLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 387 VLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 9999999998 899888889999999999999994 78889999999999999999998 777 8889999999999999
Q ss_pred cccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccc
Q 037313 286 SLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFN 341 (362)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 341 (362)
.++.. .++.... .++|++||+++|.-...--..|..++++...++.-+
T Consensus 463 ~L~~~------~l~~~~p--~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 463 NLSEV------TLPEALP--SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhh------hhhhhCC--CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 98843 4444332 278999999999632222345666666776666655
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=6.9e-20 Score=164.43 Aligned_cols=261 Identities=20% Similarity=0.188 Sum_probs=186.9
Q ss_pred CcEEEEEcCCCCCccc----CCccCCCCCCCCEEeCCCCcccc------cCCccccCCCCCcEEEccCCCCcccCCcccc
Q 037313 69 QRVTALNISGLNLTGT----IPSELGDLSSLQTLDLSFHWFSG------SIPASIYNMSSLLSINFTNNTLFAELPPIFF 138 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 138 (362)
..+++++++++.+++. +++.+...+.+++++++++.+.+ .++..+.++++|++|++++|.+.+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------ 96 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD------ 96 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh------
Confidence 4589999999998532 56667788889999999987762 3456677899999999999998754
Q ss_pred ccccCCcccCCC---CCCCCCCCCCccccccC-Cccccccccc-CCCcEEecCCcccccc----cCccccCcCCCcEEEe
Q 037313 139 FYLKVPPTVGAL---PRIPCPPQDTLWLRQKK-KAIKLRRFFW-HEKKRVMAKNNFLTGT----IPSSIFNLSSLSNLDL 209 (362)
Q Consensus 139 ~~~~~~~~~~~l---~~L~~l~l~~~~~~~~~-~~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l 209 (362)
.+..+..+ ++|++|++++|.++... ..+...+... ++|+.+++++|.+++. +...+..+++|++|++
T Consensus 97 ----~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 97 ----GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred ----HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 22233323 55999999999886311 1222334455 8999999999998843 3345567789999999
Q ss_pred ecCcCcccCchHHh---hCCCCCcEEEcccCccccc----CCccccCCCCCCeEEccccccccccCcccc-----CCCCC
Q 037313 210 SYNNLKGELPANIC---NNLPFLEILLLDENNFGRR----IPSTLSRCKHLQTLSLSVNGFSGAIPKEIG-----NLTKL 277 (362)
Q Consensus 210 ~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L 277 (362)
++|.+.+.....+. ...++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 99999853322222 2457999999999988643 344567789999999999999863333332 24799
Q ss_pred CEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc----CCccccCC-CCCceEEeccccc
Q 037313 278 KSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD----MPSDLANC-SYFRILILGFNDF 343 (362)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~l~~n~l 343 (362)
+.|++++|.+++.. ...+...+.. +++|+.+++++|.++.. +...+... +.|+.+++.+|.+
T Consensus 253 ~~L~l~~n~i~~~~---~~~l~~~~~~-~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDG---AKDLAEVLAE-KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHH---HHHHHHHHhc-CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999999886321 1223333322 37899999999999743 45556666 7899999988764
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=8.7e-17 Score=155.51 Aligned_cols=232 Identities=26% Similarity=0.275 Sum_probs=157.5
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
.-..|++++++++ .+|+.+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++. +|..
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-----------LP~l--- 260 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-----------LPVL--- 260 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-----------ccCc---
Confidence 3457899999998 7888775 48999999999998 4664 35899999999999875 4432
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
.++|+.|++++|.+.. ++. ....|+.|++++|.++. +|. ..++|+.|++++|.+. .+|. ...+|
T Consensus 261 p~sL~~L~Ls~N~L~~----Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L 324 (788)
T PRK15387 261 PPGLLELSIFSNPLTH----LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSEL 324 (788)
T ss_pred ccccceeeccCCchhh----hhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCC----Ccccc
Confidence 3578899999998762 222 22567888888888873 443 2467888888888887 4543 11234
Q ss_pred cEEEcccCcccccCCccccCCCCCCeEEcccccccc-------------------ccCccccCCCCCCEEeCcCCcccCc
Q 037313 230 EILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSG-------------------AIPKEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
+.|++++|.+++ +|.. ..+|++|++++|.+++ .+|.. ..+|+.|++++|.++
T Consensus 325 ~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-- 395 (788)
T PRK15387 325 CKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-- 395 (788)
T ss_pred cccccccCcccc-cccc---ccccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCccc--
Confidence 455555555432 2221 1245555555555442 23321 235667777777665
Q ss_pred ccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 291 VNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|+.+.++++|+.|++
T Consensus 396 ------~LP~l----~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 396 ------SLPVL----PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ------CCCCc----ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 33321 256888888888887 456533 46788999999998 78999999999998875
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=138.16 Aligned_cols=154 Identities=25% Similarity=0.372 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++.|.++.|+++ .+|+.++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++.. +|.+|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-----------lprgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-----------LPRGF 98 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-----------Ccccc
Confidence 468899999999998 88889999999999999999988 789999999999999999888744 78999
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
+.++.|+.|++.+|.+.. ..+|..+..+..|+.|+++.|++. .+|..++++++|+.|.+.+|.+. .+|..+. .++
T Consensus 99 gs~p~levldltynnl~e--~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNE--NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLT 173 (264)
T ss_pred CCCchhhhhhcccccccc--ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHH
Confidence 999999999999988864 444555555555555566555554 45555555555555555555555 5555554 455
Q ss_pred CCcEEEcccCcc
Q 037313 228 FLEILLLDENNF 239 (362)
Q Consensus 228 ~L~~L~l~~n~~ 239 (362)
.|++|.+.+|++
T Consensus 174 ~lrelhiqgnrl 185 (264)
T KOG0617|consen 174 RLRELHIQGNRL 185 (264)
T ss_pred HHHHHhccccee
Confidence 555555555555
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.1e-19 Score=138.07 Aligned_cols=158 Identities=31% Similarity=0.490 Sum_probs=117.8
Q ss_pred cCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccC
Q 037313 88 ELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKK 167 (362)
Q Consensus 88 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 167 (362)
.+-.+.+++.|.+++|+++ .+|+.++.+.+|+.|++.+|++.. +|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-----------lp----------------------- 72 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-----------LP----------------------- 72 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-----------cC-----------------------
Confidence 3456677888888888887 667778888888888888887743 44
Q ss_pred CcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCccc-CchHHhhCCCCCcEEEcccCcccccCCcc
Q 037313 168 KAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGE-LPANICNNLPFLEILLLDENNFGRRIPST 246 (362)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 246 (362)
..++.+++|+.|+++-|++. .+|..|+.+|.|+.||+..|++... +|..+| .+..|+.|++++|.+ ..+|..
T Consensus 73 ----~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff-~m~tlralyl~dndf-e~lp~d 145 (264)
T KOG0617|consen 73 ----TSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDF-EILPPD 145 (264)
T ss_pred ----hhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCc-ccCChh
Confidence 44445555566666656554 6778888888888888888877643 455555 677788888888887 567777
Q ss_pred ccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 247 LSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 247 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
++++++|+.|.+.+|.+- .+|.+++.+..|++|++.+|+++
T Consensus 146 vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 146 VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 888888888888888877 77888888888888888888876
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=4.1e-17 Score=140.87 Aligned_cols=261 Identities=20% Similarity=0.211 Sum_probs=198.5
Q ss_pred CCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCC
Q 037313 77 SGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCP 156 (362)
Q Consensus 77 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l 156 (362)
++-+++ .+|..+- +.-..++|..|+|+..-|.+|..+++|+.|||++|.|+.. -|+.|..++.+..|
T Consensus 54 r~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I----------~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 54 RGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI----------APDAFKGLASLLSL 120 (498)
T ss_pred cCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc----------ChHhhhhhHhhhHH
Confidence 344454 4565442 2668899999999977778899999999999999999764 67889999999888
Q ss_pred CCCC-ccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcc
Q 037313 157 PQDT-LWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLD 235 (362)
Q Consensus 157 ~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (362)
.+.+ |.++ ......+.++..++.|.+.-|++.......+..++++..|.+.+|.+. .++...+..+..++++.+.
T Consensus 121 vlyg~NkI~---~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 121 VLYGNNKIT---DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HhhcCCchh---hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhh
Confidence 8877 8886 455556778889999999999998888889999999999999999887 7777666688889998888
Q ss_pred cCccc------------ccCCccccCCCCCCeEEccc-------------------------cccccccC-ccccCCCCC
Q 037313 236 ENNFG------------RRIPSTLSRCKHLQTLSLSV-------------------------NGFSGAIP-KEIGNLTKL 277 (362)
Q Consensus 236 ~n~~~------------~~~~~~l~~l~~L~~L~l~~-------------------------n~l~~~~~-~~~~~l~~L 277 (362)
.|.+. ...|..++......-..+.+ +...+..| ..|..+++|
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 87631 11222222222111111111 11111222 347789999
Q ss_pred CEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCC
Q 037313 278 KSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKL 357 (362)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 357 (362)
++|++++|.++ .+....|.....+++|.|..|++...-...|..+..|++|+|.+|+++-..|..|..+.+|
T Consensus 277 ~~lnlsnN~i~--------~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 277 RKLNLSNNKIT--------RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred eEeccCCCccc--------hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 99999999998 4556666777889999999999976667789999999999999999998888899988888
Q ss_pred CeeeC
Q 037313 358 ENLDL 362 (362)
Q Consensus 358 ~~L~l 362 (362)
..|++
T Consensus 349 ~~l~l 353 (498)
T KOG4237|consen 349 STLNL 353 (498)
T ss_pred eeeeh
Confidence 87764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=6.5e-14 Score=135.51 Aligned_cols=128 Identities=23% Similarity=0.448 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCccchhcCCCCCCCCCc-----ceeeeeecCC----CCcEEEEEcCCCCCcccCCccCCC
Q 037313 21 TTSITTDQQALLALKGHVTDDLAKKLARNWDTSSFVC-----NWTGITCDVR----SQRVTALNISGLNLTGTIPSELGD 91 (362)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~c~~~----~~~l~~L~l~~~~l~~~~~~~l~~ 91 (362)
.+....|..++..+++.+. .+.. .+|.. ++| .|.|+.|... ...++.|+|+++.+.|.+|..+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Cccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence 3445678999999999884 3321 37864 344 7999999632 125999999999999999999999
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCcccc
Q 037313 92 LSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLR 164 (362)
Q Consensus 92 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 164 (362)
+++|++|+|++|.+.|.+|..++++++|++|++++|.+++. +|..++++++|+.|++++|.++
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~----------iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS----------IPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC----------CchHHhcCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999876 5555665555555555555444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.4e-14 Score=130.78 Aligned_cols=172 Identities=28% Similarity=0.484 Sum_probs=138.8
Q ss_pred CcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccc
Q 037313 168 KAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTL 247 (362)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 247 (362)
..+|.....+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ .+|..++ .+| |+.|-+++|++ +.+|..+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNNkl-~~lp~~i 162 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNNKL-TSLPEEI 162 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecCcc-ccCCccc
Confidence 445555555666677777777766 67888889999999999999998 8888886 444 88899999988 5788888
Q ss_pred cCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccc
Q 037313 248 SRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDL 327 (362)
Q Consensus 248 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 327 (362)
+....|..||.+.|.+. .+|..++.+.+|+.|.+.+|.+. .+|.... . -.|..||+++|+++ .+|..|
T Consensus 163 g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~--------~lp~El~-~-LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE--------DLPEELC-S-LPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh--------hCCHHHh-C-CceeeeecccCcee-ecchhh
Confidence 88889999999999988 77888888999999999999876 6777766 3 34889999999997 889999
Q ss_pred cCCCCCceEEecccccccccccccccCCCC
Q 037313 328 ANCSYFRILILGFNDFSGAIPKEIGNMTKL 357 (362)
Q Consensus 328 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 357 (362)
..+..|++|-|.+|.++ ..|..++...++
T Consensus 231 r~m~~Lq~l~LenNPLq-SPPAqIC~kGkV 259 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ-SPPAQICEKGKV 259 (722)
T ss_pred hhhhhheeeeeccCCCC-CChHHHHhccce
Confidence 99999999999999998 667766554443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=6.8e-14 Score=119.45 Aligned_cols=239 Identities=21% Similarity=0.243 Sum_probs=152.2
Q ss_pred CCcEEEEEcCCCCCcc----cCCccCCCCCCCCEEeCCCCcccc----cCCcc-------ccCCCCCcEEEccCCCCccc
Q 037313 68 SQRVTALNISGLNLTG----TIPSELGDLSSLQTLDLSFHWFSG----SIPAS-------IYNMSSLLSINFTNNTLFAE 132 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~-------l~~l~~L~~L~l~~n~~~~~ 132 (362)
...++.+++++|.+.- .+...+.+.++|+..++++- ++| .+|+. +..+++|+++|||+|.|...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4578999999998762 24556778889999988853 333 34443 34567899999999887432
Q ss_pred CCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCccccccc-------------Ccccc
Q 037313 133 LPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTI-------------PSSIF 199 (362)
Q Consensus 133 ~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-------------~~~l~ 199 (362)
.+. .+...+.+...|++|++.+|.++-.. ....+
T Consensus 108 ----------g~~-----------------------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~ 154 (382)
T KOG1909|consen 108 ----------GIR-----------------------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAA 154 (382)
T ss_pred ----------chH-----------------------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccC
Confidence 111 11122333455555555555544211 11223
Q ss_pred CcCCCcEEEeecCcCcccCc----hHHhhCCCCCcEEEcccCccccc----CCccccCCCCCCeEEccccccccc----c
Q 037313 200 NLSSLSNLDLSYNNLKGELP----ANICNNLPFLEILLLDENNFGRR----IPSTLSRCKHLQTLSLSVNGFSGA----I 267 (362)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~ 267 (362)
+-+.|++++...|++. ..+ ...+...+.|+.+.++.|.+... ....+..+++|++|||.+|.++.. +
T Consensus 155 ~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 4467888888888776 333 23344667888888888876432 223456788899999999888643 3
Q ss_pred CccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc----cCCccccCCCCCceEEeccccc
Q 037313 268 PKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG----DMPSDLANCSYFRILILGFNDF 343 (362)
Q Consensus 268 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l 343 (362)
...+..+++|+.|++++|.+..-+ ...+-..+....|+|+++.+.+|.|+. .+...+...+.|..|++++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~G---a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEG---AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeeccccccccccc---HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345566788899999988776432 112333444445889999999998862 2233445578888999999988
Q ss_pred c
Q 037313 344 S 344 (362)
Q Consensus 344 ~ 344 (362)
.
T Consensus 311 ~ 311 (382)
T KOG1909|consen 311 G 311 (382)
T ss_pred c
Confidence 3
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.9e-13 Score=123.63 Aligned_cols=176 Identities=27% Similarity=0.345 Sum_probs=127.7
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcc
Q 037313 91 DLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAI 170 (362)
Q Consensus 91 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 170 (362)
.+..-...|++.|++. ++|..+..+..|+.+.+.+|.+-. +|..+.++..|.+++++.|+++ .+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-----------ip~~i~~L~~lt~l~ls~NqlS----~l 136 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-----------IPEAICNLEALTFLDLSSNQLS----HL 136 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-----------cchhhhhhhHHHHhhhccchhh----cC
Confidence 3444455666666665 566666666666666666665533 6666666666666666666663 33
Q ss_pred cccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCC
Q 037313 171 KLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRC 250 (362)
Q Consensus 171 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 250 (362)
|..+.. -.|+.|-+++|+++ .+|+.++..+.|..||.+.|.+. .+|..+. .+..|+.|.+..|++. .+|..+..
T Consensus 137 p~~lC~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~- 210 (722)
T KOG0532|consen 137 PDGLCD-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCS- 210 (722)
T ss_pred Chhhhc-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhC-
Confidence 333332 34788888888887 67888888888899999999888 7888887 7888888888888874 56767774
Q ss_pred CCCCeEEccccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
-.|..||++.|++. .+|..|.++.+|++|-|.+|.++.
T Consensus 211 LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 211 LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 45888999999988 788888899999999999998873
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1.8e-11 Score=113.10 Aligned_cols=176 Identities=30% Similarity=0.383 Sum_probs=85.2
Q ss_pred CCCCCCCEEeCCCCcccccCCccccCCC-CCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCC
Q 037313 90 GDLSSLQTLDLSFHWFSGSIPASIYNMS-SLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKK 168 (362)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 168 (362)
..++.++.|++.+|.++ .++....... +|++|++++|.+.. +|..++.+++|+.|+++.|+++
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-----------l~~~~~~l~~L~~L~l~~N~l~---- 176 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-----------LPSPLRNLPNLKNLDLSFNDLS---- 176 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-----------hhhhhhccccccccccCCchhh----
Confidence 34455566666665555 4444444453 56666666665533 3445555555555555555553
Q ss_pred cccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCcccc
Q 037313 169 AIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLS 248 (362)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 248 (362)
.++......+.|+.+++++|.++ .+|........|+++.+++|... ..+..+. .+.++..+.+..|++. ..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccchhc
Confidence 22222224445555555555554 33443333344555555555332 2332232 4444555555555442 2234444
Q ss_pred CCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcc
Q 037313 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSL 287 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (362)
.+++++.|++++|.++ .++. ++...+++.+++++|.+
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccceecccccccc-cccc-ccccCccCEEeccCccc
Confidence 5555555555555555 2222 44455555555555544
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-12 Score=114.50 Aligned_cols=162 Identities=25% Similarity=0.240 Sum_probs=86.2
Q ss_pred ccCCCcEEecCCcccccccCccc-cCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCC
Q 037313 176 FWHEKKRVMAKNNFLTGTIPSSI-FNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQ 254 (362)
Q Consensus 176 ~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 254 (362)
.+++|+.|+++.|.+........ ..++.|+.|.+++|.++..--.++...+|+|+.|++..|............+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 34444555555544432111111 14456667777777666433333444667777777777742222222233456677
Q ss_pred eEEccccccccc-cCccccCCCCCCEEeCcCCcccCcccccccccChh----hhcCcCCCcEEeccCCcccccCC--ccc
Q 037313 255 TLSLSVNGFSGA-IPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPAN----FYNNIPFLEELYLSKNMFYGDMP--SDL 327 (362)
Q Consensus 255 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~----~~~~~~~L~~L~L~~n~i~~~~~--~~~ 327 (362)
+|||++|.+-.. .-...+.++.|+.|.++.+.+.++ ..|+. ....+++|+.|++..|++. ..+ ..+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si------~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l 322 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI------AEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHL 322 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchh------cCCCccchhhhcccccceeeecccCccc-cccccchh
Confidence 777777776521 113445667777777777766544 22221 1234567777777777764 222 234
Q ss_pred cCCCCCceEEecccccc
Q 037313 328 ANCSYFRILILGFNDFS 344 (362)
Q Consensus 328 ~~l~~L~~L~l~~n~l~ 344 (362)
..+++|+.|.+..|.++
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 45556666666666665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.6e-11 Score=98.29 Aligned_cols=82 Identities=34% Similarity=0.474 Sum_probs=15.4
Q ss_pred CCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccc-cCCCCCCEE
Q 037313 202 SSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEI-GNLTKLKSL 280 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L 280 (362)
.++++|++.+|.+. .+. .+...+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .+.+.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 34555555555554 222 2222344455555555554321 12344455555555555554 222222 234455555
Q ss_pred eCcCCccc
Q 037313 281 YLSQNSLQ 288 (362)
Q Consensus 281 ~L~~n~l~ 288 (362)
++++|++.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 55555444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.8e-11 Score=110.36 Aligned_cols=197 Identities=30% Similarity=0.430 Sum_probs=135.9
Q ss_pred EEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC-CCCCCCCCCccccccCCccccccc
Q 037313 97 TLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP-RIPCPPQDTLWLRQKKKAIKLRRF 175 (362)
Q Consensus 97 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~ 175 (362)
.+++..+.+... ...+...+.++.|++.+|.++. ++...+... +|+.|+++.|.+. .++..+.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-----------i~~~~~~~~~nL~~L~l~~N~i~----~l~~~~~ 160 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-----------IPPLIGLLKSNLKELDLSDNKIE----SLPSPLR 160 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-----------Cccccccchhhcccccccccchh----hhhhhhh
Confidence 577777766422 2334456788899999888866 677777774 8888888888774 3335566
Q ss_pred ccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCe
Q 037313 176 FWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQT 255 (362)
Q Consensus 176 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 255 (362)
.++.|+.|+++.|.++ .++......+.|+.|++++|.+. .+|..+. ....|+++.+++|+. -..+..+.++.++..
T Consensus 161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~ 236 (394)
T COG4886 161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSI-IELLSSLSNLKNLSG 236 (394)
T ss_pred ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcc-eecchhhhhcccccc
Confidence 7788888888888877 45555557778888888888887 7776542 344588888888853 244555677777777
Q ss_pred EEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCC
Q 037313 256 LSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMP 324 (362)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 324 (362)
+.+.+|++. ..+..++.+++++.|++++|.+.. ++. .....+++.|++++|.+....+
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~--------i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--------ISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccCCceee-eccchhccccccceeccccccccc--------ccc--ccccCccCEEeccCccccccch
Confidence 777777776 335666777778888888887763 333 2334778888888877654433
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=1.9e-12 Score=110.79 Aligned_cols=246 Identities=20% Similarity=0.256 Sum_probs=163.8
Q ss_pred CccCCCCCCCCEEeCCCCccccc----CCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCc
Q 037313 86 PSELGDLSSLQTLDLSFHWFSGS----IPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTL 161 (362)
Q Consensus 86 ~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~ 161 (362)
-+.+..+..++.+++++|.+... +...+.+.++|+..++++- ++|..-. .+|..+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~------Ei~e~L-------------- 81 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKD------EIPEAL-------------- 81 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHH------HHHHHH--------------
Confidence 34567788999999999988643 5556677788888888753 3332000 011111
Q ss_pred cccccCCcccccccccCCCcEEecCCcccccccCcc----ccCcCCCcEEEeecCcCcccCchHH------------hhC
Q 037313 162 WLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSS----IFNLSSLSNLDLSYNNLKGELPANI------------CNN 225 (362)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~------------~~~ 225 (362)
..+...+-..++|++++|+.|.+....++. +.++..|++|.+.+|.+...--..+ ...
T Consensus 82 ------~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~ 155 (382)
T KOG1909|consen 82 ------KMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS 155 (382)
T ss_pred ------HHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence 112223345568999999999887665544 4578999999999998752111111 114
Q ss_pred CCCCcEEEcccCccccc----CCccccCCCCCCeEEccccccccc----cCccccCCCCCCEEeCcCCcccCcccccccc
Q 037313 226 LPFLEILLLDENNFGRR----IPSTLSRCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYLSQNSLQGIVNRLSAE 297 (362)
Q Consensus 226 l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 297 (362)
-+.|+.+...+|++... +...+...+.|+++.+..|.+... +...+..+++|+.|||.+|.++...- .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----~ 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----V 231 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----H
Confidence 47899999999988532 223456678999999999998522 34567889999999999998864321 1
Q ss_pred cChhhhcCcCCCcEEeccCCcccccC----Cccc-cCCCCCceEEeccccccc----ccccccccCCCCCeeeC
Q 037313 298 LPANFYNNIPFLEELYLSKNMFYGDM----PSDL-ANCSYFRILILGFNDFSG----AIPKEIGNMTKLENLDL 362 (362)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~n~i~~~~----~~~~-~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l 362 (362)
.-......+++|++|++++|.+...- ...+ ...|+|+.+.+.+|.++- .+..++...+.|+.|+|
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 11223344688999999999886322 2222 357899999999999874 34445566777776654
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=3e-10 Score=110.20 Aligned_cols=106 Identities=31% Similarity=0.450 Sum_probs=57.2
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
++.|++++|.+++.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+++ .+|..+. .+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-------~iP~~l~-~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-------SIPESLG-QLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-------CCchHHh-cCCC
Confidence 4455555555555555555555555555555555555555555555555555555555542 3443332 2355
Q ss_pred CcEEeccCCcccccCCccccCC-CCCceEEecccc
Q 037313 309 LEELYLSKNMFYGDMPSDLANC-SYFRILILGFND 342 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~ 342 (362)
|+.|++++|+++|.+|..+... .++..+++.+|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 5556665555555555555432 234455555553
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.9e-11 Score=101.67 Aligned_cols=129 Identities=27% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEe
Q 037313 202 SSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLY 281 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (362)
+.|+++|+++|.++ .+...+. -.|.++.|+++.|.+.... .+..+++|+.||+++|.++ .+..|=..+.++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34444444444444 3433332 3455555555555443221 2444555555555555554 2333333455555566
Q ss_pred CcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc-cCCccccCCCCCceEEeccccccc
Q 037313 282 LSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG-DMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 282 L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
+++|.+... +++.. +-+|..||+++|+|.. .-...++++|.|+.+.+.+|.+.+
T Consensus 359 La~N~iE~L---------SGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL---------SGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh---------hhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 665554311 11111 2345566666665542 112345666666666666666653
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.5e-11 Score=108.18 Aligned_cols=178 Identities=21% Similarity=0.188 Sum_probs=117.3
Q ss_pred ccCCCcEEecCCccccc--ccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCc-cccCCCC
Q 037313 176 FWHEKKRVMAKNNFLTG--TIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPS-TLSRCKH 252 (362)
Q Consensus 176 ~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~ 252 (362)
.+++.+.|++++|-+.. .+......+|+|+.|+++.|.+.-......-..++.|+.|.++.|+++..... ....+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 44555666666665442 13334558899999999999987433333334678999999999998753322 2356899
Q ss_pred CCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc-CCcc-----
Q 037313 253 LQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD-MPSD----- 326 (362)
Q Consensus 253 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~----- 326 (362)
|+.|++..|.....-.....-+..|+.|+|++|++-+.. ..+ ....++.|..|+++.|.+... .|+.
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~--~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGY--KVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----ccc--ccccccchhhhhccccCcchhcCCCccchhh
Confidence 999999999532222233344678999999999875321 111 234568899999999988642 2333
Q ss_pred ccCCCCCceEEeccccccc-ccccccccCCCCCee
Q 037313 327 LANCSYFRILILGFNDFSG-AIPKEIGNMTKLENL 360 (362)
Q Consensus 327 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 360 (362)
-..+++|++|++..|++.. .....+..+++|+.|
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred hcccccceeeecccCccccccccchhhccchhhhh
Confidence 3477899999999999963 112234444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.7e-10 Score=92.45 Aligned_cols=85 Identities=28% Similarity=0.316 Sum_probs=28.9
Q ss_pred cCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCccccc-CCccccCCCCCCe
Q 037313 177 WHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRR-IPSTLSRCKHLQT 255 (362)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~ 255 (362)
+.+|+.|++++|.++.. +.+..++.|++|++++|.++ .+...+...+|+|++|++++|++... .-..+..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 45566666666666532 23555666667777766666 45443333466666666666666431 1233445566666
Q ss_pred EEccccccc
Q 037313 256 LSLSVNGFS 264 (362)
Q Consensus 256 L~l~~n~l~ 264 (362)
|++.+|+++
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 666666555
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=3.8e-10 Score=112.09 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCC--CcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcc
Q 037313 69 QRVTALNISGLN--LTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPT 146 (362)
Q Consensus 69 ~~l~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~ 146 (362)
.++++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|..++++-+|++|+++++.+.. +|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-----------LP~~ 613 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-----------LPSG 613 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-----------cchH
Confidence 457777777775 332233347778888888888877777888888888888888888888754 7888
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccc--cccCccccCcCCCcEEEeecCcCcccCchHHhh
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLT--GTIPSSIFNLSSLSNLDLSYNNLKGELPANICN 224 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (362)
++++..|.+|++..+... ..++.....+++|++|.+...... ...-..+.++.+|+.+....... .+...+.
T Consensus 614 l~~Lk~L~~Lnl~~~~~l---~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~- 687 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRL---ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL- 687 (889)
T ss_pred HHHHHhhheecccccccc---ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-
Confidence 888888888888877543 333444555788888887655421 12223334455555554433222 0000110
Q ss_pred CCCCCc----EEEcccCcccccCCccccCCCCCCeEEccccccc
Q 037313 225 NLPFLE----ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFS 264 (362)
Q Consensus 225 ~l~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 264 (362)
..+.|. .+.+.++.. ...+..+..+.+|+.|.+.++...
T Consensus 688 ~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence 122222 222222222 233444566777777777777765
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.4e-10 Score=96.24 Aligned_cols=123 Identities=25% Similarity=0.221 Sum_probs=96.5
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhc
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYN 304 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 304 (362)
.+..|+++++++|.++ .+-+.+.-.|.++.|++++|.+... . .++.+++|+.||+++|.++. + .++..
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~--------~-~Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAE--------C-VGWHL 349 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhHh--------h-hhhHh
Confidence 4566999999999885 4556677789999999999999833 2 37789999999999998863 2 23444
Q ss_pred CcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccc-cccccccCCCCCeee
Q 037313 305 NIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGA-IPKEIGNMTKLENLD 361 (362)
Q Consensus 305 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 361 (362)
.+.+++.|.+++|.+.. ...+..+-+|.+||+++|++... -...++++|.|+.+.
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 56889999999998742 34577888899999999999842 234688899888764
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.8e-09 Score=71.19 Aligned_cols=61 Identities=38% Similarity=0.517 Sum_probs=42.9
Q ss_pred CCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccc
Q 037313 275 TKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDF 343 (362)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 343 (362)
|+|++|++++|+++ .++...+..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~--------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45667777777665 56666666667777777777777766666777777777777777764
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.2e-11 Score=99.57 Aligned_cols=203 Identities=18% Similarity=0.184 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCC--CCCEEeCCCCccccc-CCcccc-CCCCCcEEEccCCCCcccCCccccccccC
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLS--SLQTLDLSFHWFSGS-IPASIY-NMSSLLSINFTNNTLFAELPPIFFFYLKV 143 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~-~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~ 143 (362)
...-+.+|+.+-.+. |..++.+. ....+.+....+..+ +.+.+. .-+.|++||+++..++.. .+
T Consensus 135 e~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s---------tl 202 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS---------TL 202 (419)
T ss_pred ccceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH---------HH
Confidence 356788899888876 44444432 334444443333222 222222 224688899988877642 12
Q ss_pred CcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcc-ccccc-CccccCcCCCcEEEeecCcCcccCch-
Q 037313 144 PPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNF-LTGTI-PSSIFNLSSLSNLDLSYNNLKGELPA- 220 (362)
Q Consensus 144 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~- 220 (362)
-..+..+.+|+.+++.++++. ..+...+..-..|+.++++.+. ++... -.-+.+|+.|.+|+++++.+....-.
T Consensus 203 ~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 223455566666666666665 4555555555566666665532 22111 11233555666666666555432211
Q ss_pred HHhhCCCCCcEEEcccCccc--c-cCCccccCCCCCCeEEccccc-cccccCccccCCCCCCEEeCcCC
Q 037313 221 NICNNLPFLEILLLDENNFG--R-RIPSTLSRCKHLQTLSLSVNG-FSGAIPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~~~--~-~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n 285 (362)
.+..--++|+.|+++++.-. . .+..-..++++|.+||+++|. ++.....+|-+++.|++|.+++|
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 11111134555555554210 0 011111344555555555443 22222233334445555555544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4e-10 Score=104.55 Aligned_cols=240 Identities=23% Similarity=0.213 Sum_probs=141.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
.+..+.++.|.+. .+-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+.. ..+..
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i------------~~l~~ 138 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL------------EGLST 138 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc------------cchhh
Confidence 4555556666665 23334677788888888888877 3333366788888888888887653 34556
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccC-ccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIP-SSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
++.|+.|++.+|.++...+ +..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+. .+...- .+..
T Consensus 139 l~~L~~L~l~~N~i~~~~~-----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~~--~~~~ 209 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDISG-----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGLD--LLKK 209 (414)
T ss_pred ccchhhheeccCcchhccC-----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccchH--HHHH
Confidence 6667888888887753222 2226777778888887764433 2 466777788888777765 322111 2223
Q ss_pred CcEEEcccCcccccCCccccCCC--CCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCc
Q 037313 229 LEILLLDENNFGRRIPSTLSRCK--HLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNI 306 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 306 (362)
+..+++..|.++..-+ +..+. .|+.+++++|++. ..+..+..+.++..+++.+|.+.... . ....
T Consensus 210 l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-----~-----~~~~ 276 (414)
T KOG0531|consen 210 LVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-----G-----LERL 276 (414)
T ss_pred HHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-----c-----cccc
Confidence 3344666666543222 22223 3778888888876 33345556677788888877765321 0 1112
Q ss_pred CCCcEEeccCCcccc---cCCcc-ccCCCCCceEEeccccccc
Q 037313 307 PFLEELYLSKNMFYG---DMPSD-LANCSYFRILILGFNDFSG 345 (362)
Q Consensus 307 ~~L~~L~L~~n~i~~---~~~~~-~~~l~~L~~L~l~~n~l~~ 345 (362)
+.+..+....+.+.. ..... ....++++...+.+|.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 444555555555431 11111 3455666667777666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=4.2e-09 Score=69.38 Aligned_cols=58 Identities=36% Similarity=0.452 Sum_probs=26.5
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCC
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (362)
+|++|++++|+++...+..+..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444333344444444444444444444333444444444444444444
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=8.4e-10 Score=91.71 Aligned_cols=239 Identities=16% Similarity=0.156 Sum_probs=147.6
Q ss_pred CcEEEEEcCCCCCccc----CCccCCCCCCCCEEeCCCCcccc----cC-------CccccCCCCCcEEEccCCCCcccC
Q 037313 69 QRVTALNISGLNLTGT----IPSELGDLSSLQTLDLSFHWFSG----SI-------PASIYNMSSLLSINFTNNTLFAEL 133 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~-------~~~l~~l~~L~~L~l~~n~~~~~~ 133 (362)
..+++++++||.|... +...+.+-.+|+..++++- ++| .+ .+.+.+|++|++.+++.|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4678888888887632 3345566778888888753 222 22 234567888888888888875542
Q ss_pred CccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccc----cCc---------cccC
Q 037313 134 PPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGT----IPS---------SIFN 200 (362)
Q Consensus 134 p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~---------~l~~ 200 (362)
|. .+...++....|.+|.+++|.+.-. +.. -..+
T Consensus 109 ~e---------------------------------~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~ 155 (388)
T COG5238 109 PE---------------------------------ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD 155 (388)
T ss_pred ch---------------------------------HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc
Confidence 21 1122233445666666666655421 111 1223
Q ss_pred cCCCcEEEeecCcCcccCchHH----hhCCCCCcEEEcccCcccccCCc-----cccCCCCCCeEEccccccccc----c
Q 037313 201 LSSLSNLDLSYNNLKGELPANI----CNNLPFLEILLLDENNFGRRIPS-----TLSRCKHLQTLSLSVNGFSGA----I 267 (362)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-----~l~~l~~L~~L~l~~n~l~~~----~ 267 (362)
-|.|++.....|++. ..+... +....+|+++.+..|.+...... .+..+.+|+.||+.+|.++.. +
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 478999999999886 555332 33446899999999976432211 224578999999999998743 2
Q ss_pred CccccCCCCCCEEeCcCCcccCcccccccccChhhh-cCcCCCcEEeccCCcccccCCcc-----c--cCCCCCceEEec
Q 037313 268 PKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFY-NNIPFLEELYLSKNMFYGDMPSD-----L--ANCSYFRILILG 339 (362)
Q Consensus 268 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~-----~--~~l~~L~~L~l~ 339 (362)
..++..++.|+.|.+.+|-++..+. ..+...+. .-.|+|..|-..+|.+.+.+-.. + ..+|-|..|.+.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~---~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGV---KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHhcccchhhhccccchhhccccH---HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 3344567789999999997653211 01111110 12478999999999765432111 1 366777888888
Q ss_pred cccccc
Q 037313 340 FNDFSG 345 (362)
Q Consensus 340 ~n~l~~ 345 (362)
+|.+..
T Consensus 312 gNr~~E 317 (388)
T COG5238 312 GNRIKE 317 (388)
T ss_pred cCcchh
Confidence 888863
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=4.9e-09 Score=104.36 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=134.3
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCc--ccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcc
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHW--FSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPT 146 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~ 146 (362)
..++...+-++.+. .++... ..++|++|-+.+|. +....++.|..++.|++||+++|.-.+. +|..
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~----------LP~~ 590 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK----------LPSS 590 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc----------CChH
Confidence 35667777777665 344333 34589999999986 4433444577899999999998765555 8999
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCc--ccCchHHhh
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLK--GELPANICN 224 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~ 224 (362)
++.+-+|++|++++..+ ..+|..+.++..|.+|++..+.....++.....+++|++|.+..-... +..-..+ .
T Consensus 591 I~~Li~LryL~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~ 665 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-E 665 (889)
T ss_pred HhhhhhhhcccccCCCc----cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-h
Confidence 99999999999999987 578889999999999999988766566666667999999998664422 1122222 2
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCC----eEEccccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQ----TLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
.+.+|+.+....... .+-..+..+.+|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 666 ~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 666 NLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 455555555433322 1111222333333 3333333332 445567788999999999987753
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2e-09 Score=90.71 Aligned_cols=181 Identities=16% Similarity=0.074 Sum_probs=118.1
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCc-CcccCchHHhhCCCCCc
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNN-LKGELPANICNNLPFLE 230 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 230 (362)
.+++++++...++. ..+...++.+.+|+.+.+.++++.+.+...++.-..|+.|+++.+. ++..-..-++..+..|.
T Consensus 186 Rlq~lDLS~s~it~--stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH--HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 47788888877653 3444556677888888888888888787888888888888888764 44222234456778888
Q ss_pred EEEcccCcccccCCccc--cCCCCCCeEEccccccc---cccCccccCCCCCCEEeCcCCc-ccCcccccccccChhhhc
Q 037313 231 ILLLDENNFGRRIPSTL--SRCKHLQTLSLSVNGFS---GAIPKEIGNLTKLKSLYLSQNS-LQGIVNRLSAELPANFYN 304 (362)
Q Consensus 231 ~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~ 304 (362)
+|+++.|.++......+ .--++|+.|+++|+.-. ..+..-..++|+|.+|||++|. ++. .+...++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-------~~~~~~~- 335 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-------DCFQEFF- 335 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-------hHHHHHH-
Confidence 88888887654322211 12357888888876532 1222233568899999998873 321 2222333
Q ss_pred CcCCCcEEeccCCc-ccccCCccccCCCCCceEEecccc
Q 037313 305 NIPFLEELYLSKNM-FYGDMPSDLANCSYFRILILGFND 342 (362)
Q Consensus 305 ~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 342 (362)
.++.|++|.++.|- |....--.+...|.|.+|++.++-
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 35788999988885 222222346677888899887653
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-08 Score=93.86 Aligned_cols=197 Identities=23% Similarity=0.215 Sum_probs=98.0
Q ss_pred CCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCccccccc
Q 037313 115 NMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTI 194 (362)
Q Consensus 115 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 194 (362)
.+..++.+++..|.+.. +-..+..+.+++.+++.+|.+..... .+..+++|++|++++|.|+..
T Consensus 70 ~l~~l~~l~l~~n~i~~-----------~~~~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i- 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-----------ILNHLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKL- 133 (414)
T ss_pred HhHhHHhhccchhhhhh-----------hhcccccccceeeeeccccchhhccc----chhhhhcchheeccccccccc-
Confidence 45556666666666533 22335556666666666665542111 134455555555555555532
Q ss_pred CccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCC-ccccCCCCCCeEEccccccccccCccccC
Q 037313 195 PSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIP-STLSRCKHLQTLSLSVNGFSGAIPKEIGN 273 (362)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 273 (362)
..+..++.|+.|++.+|.+. .+... ..++.|+.+++++|++...-+ . ...+.+++.+.+++|.+... ..+..
T Consensus 134 -~~l~~l~~L~~L~l~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~ 206 (414)
T KOG0531|consen 134 -EGLSTLTLLKELNLSGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDL 206 (414)
T ss_pred -cchhhccchhhheeccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHH
Confidence 22334444555555555554 22211 124455555555555533222 1 23445555555555554411 11222
Q ss_pred CCCCCEEeCcCCcccCcccccccccChhhhcCcC--CCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 274 LTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIP--FLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 274 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
+..+..+++..|.++... .++. .. .|+.+++++|.+. ..+..+..+.++..+++..|++..
T Consensus 207 ~~~l~~~~l~~n~i~~~~-----~l~~-----~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLE-----GLNE-----LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHHHhhcccccceecc-----Cccc-----chhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 223333344444443210 0110 12 2778888888876 334667777888888888887764
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.7e-08 Score=84.00 Aligned_cols=202 Identities=16% Similarity=0.066 Sum_probs=102.6
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcE
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEI 231 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 231 (362)
.++.+++.+|.+++ ...+...+..+|.|+.|+++.|.+...+...-....+|++|.+.+..+...-.......+|.+++
T Consensus 72 ~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 34444444444331 02333444566777777777776664332221344566677766665554333333345666666
Q ss_pred EEcccCccccc--CCcccc-CCCCCCeEEcccccccc--ccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCc
Q 037313 232 LLLDENNFGRR--IPSTLS-RCKHLQTLSLSVNGFSG--AIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNI 306 (362)
Q Consensus 232 L~l~~n~~~~~--~~~~l~-~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 306 (362)
|.++.|.+... ...... .-+.++++.+-+|.... .....-...|++..+-+..|.++... ...-+..+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s-------~ek~se~~ 223 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES-------SEKGSEPF 223 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh-------hcccCCCC
Confidence 66666633110 000000 11233344443333210 00000112467777777777665321 11122334
Q ss_pred CCCcEEeccCCcccc-cCCccccCCCCCceEEeccccccccccc------ccccCCCCCeee
Q 037313 307 PFLEELYLSKNMFYG-DMPSDLANCSYFRILILGFNDFSGAIPK------EIGNMTKLENLD 361 (362)
Q Consensus 307 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~ 361 (362)
|.+.-|+|+.++|.. ..-+.+.++++|..|.++++.+.+.+-. .++.+++++.|+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 667778888888753 2234577888899999999888754322 356677777664
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4.5e-08 Score=82.63 Aligned_cols=203 Identities=17% Similarity=0.157 Sum_probs=121.2
Q ss_pred CCCCCCEEeCCCCcccc--cCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCC
Q 037313 91 DLSSLQTLDLSFHWFSG--SIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKK 168 (362)
Q Consensus 91 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 168 (362)
..++++.+||.+|.++. .+..-+.+++.|++|++++|.+... .+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----------------------------------I~ 114 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----------------------------------IK 114 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----------------------------------cc
Confidence 34566677777776653 2333344666666666666665332 13
Q ss_pred cccccccccCCCcEEecCCcccccc-cCccccCcCCCcEEEeecCcCcccCc--hHHhhCCCCCcEEEcccCcccc--cC
Q 037313 169 AIKLRRFFWHEKKRVMAKNNFLTGT-IPSSIFNLSSLSNLDLSYNNLKGELP--ANICNNLPFLEILLLDENNFGR--RI 243 (362)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~~~~--~~ 243 (362)
..| ....+|+.+-+.+..+.-. ....+..+|.+++|.++.|.+..... ..+....+.++++....|.... ..
T Consensus 115 ~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~ 191 (418)
T KOG2982|consen 115 SLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK 191 (418)
T ss_pred cCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH
Confidence 333 1235778888888776533 33455688999999999996542111 1111123456666666664321 01
Q ss_pred CccccCCCCCCeEEccccccccc-cCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 244 PSTLSRCKHLQTLSLSVNGFSGA-IPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
...-..++++..+-+..|.+... ....+...|.+..|.|+.+++.+.. .+ +....++.|..|.+++|.+...
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa-----sv--D~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA-----SV--DALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH-----HH--HHHcCCchhheeeccCCccccc
Confidence 11113357788888888877533 2344556788889999999886431 11 2234468899999999988643
Q ss_pred CCc------cccCCCCCceEE
Q 037313 323 MPS------DLANCSYFRILI 337 (362)
Q Consensus 323 ~~~------~~~~l~~L~~L~ 337 (362)
+.. .+..+++++.|+
T Consensus 265 l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 265 LRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccCCcceEEEEeeccceEEec
Confidence 322 356778888775
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.35 E-value=4.5e-07 Score=54.71 Aligned_cols=40 Identities=45% Similarity=0.892 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhcCCCCccchhcCCCCCC--CCCcceeeeeec
Q 037313 25 TTDQQALLALKGHVTDDLAKKLARNWDTS--SFVCNWTGITCD 65 (362)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~c~ 65 (362)
..|.++|++||.++..++...+ .+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l-~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVL-SSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCC-TT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccc-ccCCCcCCCCCeeeccEEeC
Confidence 4689999999999976665666 999987 799999999995
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=3.4e-08 Score=73.82 Aligned_cols=83 Identities=29% Similarity=0.420 Sum_probs=39.1
Q ss_pred cCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEE
Q 037313 201 LSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSL 280 (362)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (362)
...|+..++++|.+. .+|..+...++.++++++..|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344444555555554 455444434444555555555442 34444444555555555555444 334444444444444
Q ss_pred eCcCCc
Q 037313 281 YLSQNS 286 (362)
Q Consensus 281 ~L~~n~ 286 (362)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 444443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=1.4e-08 Score=95.16 Aligned_cols=130 Identities=30% Similarity=0.327 Sum_probs=93.1
Q ss_pred cCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeE
Q 037313 177 WHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTL 256 (362)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 256 (362)
+.+|...+++.|.+. .+..++.-++.|+.|+++.|++. .+. .+. .+++|++||++.|++. .+|..-..-.+|+.|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhhhheee
Confidence 567888888888887 46677777889999999999988 444 443 7899999999999884 344322222349999
Q ss_pred EccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccc
Q 037313 257 SLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
.+++|.++.- ..+.++.+|+.||++.|-+.+. . .+.. ...+..|+.|.|.+|.+-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~h----s-eL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEH----S-ELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcc----h-hhhH--HHHHHHHHHHhhcCCccc
Confidence 9999988732 3466788999999999977642 1 1211 112356889999999764
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=3.2e-08 Score=92.93 Aligned_cols=126 Identities=24% Similarity=0.211 Sum_probs=85.1
Q ss_pred CCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEE
Q 037313 153 IPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEIL 232 (362)
Q Consensus 153 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (362)
|...+.++|.+. .+...+.-++.++.|++++|+++.. +.+..+++|++||++.|.+. .+|.--. .-..|..|
T Consensus 166 L~~a~fsyN~L~----~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~-~gc~L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYNRLV----LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSM-VGCKLQLL 237 (1096)
T ss_pred HhhhhcchhhHH----hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccch-hhhhheee
Confidence 455556666552 3334455567888888888888753 27778888888888888887 6664222 22348888
Q ss_pred EcccCcccccCCccccCCCCCCeEEcccccccccc-CccccCCCCCCEEeCcCCccc
Q 037313 233 LLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAI-PKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 288 (362)
.+++|.++.. ..+.++++|+.||+++|-+.+.- ...+..+..|+.|+|.+|.+-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888877532 24667888888888888876431 122344667788888888763
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=1.5e-07 Score=78.61 Aligned_cols=197 Identities=19% Similarity=0.133 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCCCc---ccCC-------ccCCCCCCCCEEeCCCCcccccCCccc----cCCCCCcEEEccCCCCcccCC
Q 037313 69 QRVTALNISGLNLT---GTIP-------SELGDLSSLQTLDLSFHWFSGSIPASI----YNMSSLLSINFTNNTLFAELP 134 (362)
Q Consensus 69 ~~l~~L~l~~~~l~---~~~~-------~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~p 134 (362)
.+++..++++--.. +.++ +.+.++|+|+..+|++|.|....|+.+ ++-..|++|.+++|.+...-.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 45666666654221 2222 456789999999999999987766554 567899999999997622100
Q ss_pred ccc---cccccCCcccCCCCCCCCCCCCCccccccCCcc-cccccccCCCcEEecCCcccccccC-----ccccCcCCCc
Q 037313 135 PIF---FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAI-KLRRFFWHEKKRVMAKNNFLTGTIP-----SSIFNLSSLS 205 (362)
Q Consensus 135 ~~~---~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~ 205 (362)
..+ .+.........+-|.|+......|++.+..... ...+.....|+.+.+..|.|.-..- ..+..+++|+
T Consensus 138 ~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~Le 217 (388)
T COG5238 138 GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLE 217 (388)
T ss_pred hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcce
Confidence 000 000012233456677888888888776432222 2223334578888888887653311 2234567888
Q ss_pred EEEeecCcCcccCchH---HhhCCCCCcEEEcccCcccccCCccc------cCCCCCCeEEcccccccc
Q 037313 206 NLDLSYNNLKGELPAN---ICNNLPFLEILLLDENNFGRRIPSTL------SRCKHLQTLSLSVNGFSG 265 (362)
Q Consensus 206 ~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~l------~~l~~L~~L~l~~n~l~~ 265 (362)
.||+.+|.++-.-+.. ....++.|++|.+..|-++......+ ...++|..|-..+|...+
T Consensus 218 vLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 218 VLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred eeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 8888888776322221 12256677888887776654333222 234666666666666543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=2.7e-07 Score=69.14 Aligned_cols=134 Identities=25% Similarity=0.300 Sum_probs=93.2
Q ss_pred CCcEEEeecCcCcccCchHHh--hCCCCCcEEEcccCcccccCCccc-cCCCCCCeEEccccccccccCccccCCCCCCE
Q 037313 203 SLSNLDLSYNNLKGELPANIC--NNLPFLEILLLDENNFGRRIPSTL-SRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKS 279 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (362)
.+..++++.+.+- .++.... .....|+..++++|.+.. +|..+ ...+.++++++++|.+. ++|.+++.++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3456677777665 4554332 245678888999999854 45444 56678999999999998 88999999999999
Q ss_pred EeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccccccc
Q 037313 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPK 349 (362)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 349 (362)
|+++.|.+. ..|.-++. +.++-.|+..+|.+. .+|-.+---...-..+++++.+.+.-+.
T Consensus 105 lNl~~N~l~--------~~p~vi~~-L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 105 LNLRFNPLN--------AEPRVIAP-LIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccccCccc--------cchHHHHH-HHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 999999886 56666666 578888898888775 4444322222233345566677665443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.1e-06 Score=50.62 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=26.2
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcc
Q 037313 93 SSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFA 131 (362)
Q Consensus 93 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 131 (362)
++|++|++++|+++ .+|..++++++|++|++++|.++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46777777777777 566667777788888887777653
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=1.9e-06 Score=84.02 Aligned_cols=143 Identities=22% Similarity=0.218 Sum_probs=86.4
Q ss_pred cCCCcEEecCCcccc-cccCcccc-CcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCC
Q 037313 177 WHEKKRVMAKNNFLT-GTIPSSIF-NLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQ 254 (362)
Q Consensus 177 ~~~L~~L~l~~n~~~-~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 254 (362)
..+|++|++++...- ..-+..++ .+|+|+.|.+++-.+...--..++.++|+|..||+++++++.. ..++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 356677777664322 11222333 4688888888776554332345666888888888888877543 4577888888
Q ss_pred eEEcccccccc-ccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccC
Q 037313 255 TLSLSVNGFSG-AIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDM 323 (362)
Q Consensus 255 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 323 (362)
+|.+.+=.+.. ..-..+.++.+|+.||+|+....... ++.... -+....+|+|+.||.|++.+.+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qY-lec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQY-LECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHH-HHhcccCccccEEecCCcchhHHH
Confidence 88887766653 22334557888888888876543221 011100 111223577888888887776543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=6.7e-06 Score=49.66 Aligned_cols=38 Identities=39% Similarity=0.465 Sum_probs=29.2
Q ss_pred CCCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 307 PFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 307 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
++|++|++++|+|+ .+|..+..+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36888888888887 566678888889999998888873
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=3.2e-06 Score=82.49 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCCccc-CCccC-CCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEEccCCCCcccCCccccccccCCc
Q 037313 69 QRVTALNISGLNLTGT-IPSEL-GDLSSLQTLDLSFHWFSG-SIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPP 145 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~-~~~~l-~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~ 145 (362)
.++++||++|...-.. =|..+ .-||.|++|.+++-.+.. .+-....++++|..||+++++++. + .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-----------l-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-----------L-S 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-----------c-H
Confidence 4677788877553311 11222 356888888888766542 233334567888888888888754 2 5
Q ss_pred ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCccccccc--C----ccccCcCCCcEEEeecCcCcccCc
Q 037313 146 TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTI--P----SSIFNLSSLSNLDLSYNNLKGELP 219 (362)
Q Consensus 146 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~ 219 (362)
+++++++|+.|.+.+-.+.. ...-..+..+++|+.||++........ . +.-..+|.|+.||.+++.+.+.+-
T Consensus 190 GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 67788888888887776652 233344566777777777765543211 0 111246677777777776666555
Q ss_pred hHHhhCCCCCcEEEc
Q 037313 220 ANICNNLPFLEILLL 234 (362)
Q Consensus 220 ~~~~~~l~~L~~L~l 234 (362)
..+....|+|+.+..
T Consensus 268 e~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHHhCccHhhhhh
Confidence 555555566665543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=4.9e-05 Score=61.07 Aligned_cols=126 Identities=25% Similarity=0.238 Sum_probs=75.0
Q ss_pred cEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcC
Q 037313 205 SNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284 (362)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (362)
+.+++.+.++. .+ ..+.....+...+++++|.+. --..+..+++|.+|.+++|+++...|.--.-+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-ch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 34555554443 11 123324456777888888763 223466778888888888888854443333467788888888
Q ss_pred CcccCcccccccccChhhhcCcCCCcEEeccCCcccccC---CccccCCCCCceEEeccc
Q 037313 285 NSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDM---PSDLANCSYFRILILGFN 341 (362)
Q Consensus 285 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~l~~n 341 (362)
|+++.. |.+.. . ..+|.|+.|.+-+|.++..- .-.+..+|+|++||+..=
T Consensus 98 Nsi~~l-----~dl~p-L-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQEL-----GDLDP-L-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhh-----hhcch-h-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 877642 23322 1 22477888888888765221 123557778888877653
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=4.6e-07 Score=80.06 Aligned_cols=260 Identities=16% Similarity=0.080 Sum_probs=135.3
Q ss_pred CCcEEEEEcCCCCCccc--CCccCCCCCCCCEEeCCCCc-ccccCCcccc-CCCCCcEEEccCCC-CcccCCcccccccc
Q 037313 68 SQRVTALNISGLNLTGT--IPSELGDLSSLQTLDLSFHW-FSGSIPASIY-NMSSLLSINFTNNT-LFAELPPIFFFYLK 142 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~-~l~~L~~L~l~~n~-~~~~~p~~~~~~~~ 142 (362)
.+++++|.+.|+.-.+. +-....+++++++|++.++. ++...-.+++ .+++|+++++..|. ++.. .
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---------~ 207 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---------S 207 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---------H
Confidence 46788888888864432 22344678899999998875 3333333444 58889999888754 3321 0
Q ss_pred CCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcE--------------------------EecCCcc-ccccc-
Q 037313 143 VPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKR--------------------------VMAKNNF-LTGTI- 194 (362)
Q Consensus 143 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~--------------------------L~l~~n~-~~~~~- 194 (362)
+-.....+++|++++++.+.--.. ..+.....+...++. +++.++. +++.-
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhc-CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 111234577788887776642111 111111122222333 3322321 12110
Q ss_pred CccccCcCCCcEEEeecCcC-cccCchHHhhCCCCCcEEEcccCc-ccccCCccc-cCCCCCCeEEccccccccc--cCc
Q 037313 195 PSSIFNLSSLSNLDLSYNNL-KGELPANICNNLPFLEILLLDENN-FGRRIPSTL-SRCKHLQTLSLSVNGFSGA--IPK 269 (362)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~n~l~~~--~~~ 269 (362)
...-..+..|++|+.+++.- ++..-..+..+.++|+.+.+.+|+ ++......+ .+.+.|+.+++.++...-+ +..
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 00011345666666665433 222233455566777777777774 322222222 3456777777777654311 222
Q ss_pred cccCCCCCCEEeCcCCc-ccCcccccccccChhhhcCcCCCcEEeccCCcc-cccCCccccCCCCCceEEeccc
Q 037313 270 EIGNLTKLKSLYLSQNS-LQGIVNRLSAELPANFYNNIPFLEELYLSKNMF-YGDMPSDLANCSYFRILILGFN 341 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~l~~n 341 (362)
.-.+++.|+++.++.+. +++.+....+... .....+..+.++++.. +......+..+++|+.+++-.+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~----c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSS----CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhcc----ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 22356777777777663 3322111111111 1225577777777753 3444556667777777777776
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00023 Score=64.49 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=75.4
Q ss_pred cccCCCcEEecCCcccccccCccccCc-CCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCC
Q 037313 175 FFWHEKKRVMAKNNFLTGTIPSSIFNL-SSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHL 253 (362)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (362)
..+.+++.|++++|.++ .+| .+ ++|++|.++++.-...+|..+ .++|++|++++|.....+| .+|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence 34588999999999776 345 23 369999998754433566433 2578999999883223344 357
Q ss_pred CeEEccccccc--cccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCC
Q 037313 254 QTLSLSVNGFS--GAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCS 331 (362)
Q Consensus 254 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 331 (362)
+.|+++.+... +.+| ++|+.|.+.+++... ...++.. ..++|+.|++++|... .+|..+. .
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~-----~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPEN-----QARIDNL---ISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheecccccccc-----ccccccc---cCCcccEEEecCCCcc-cCccccc--c
Confidence 77777765543 1233 345555554322100 0011110 1145777777766543 2333332 3
Q ss_pred CCceEEeccc
Q 037313 332 YFRILILGFN 341 (362)
Q Consensus 332 ~L~~L~l~~n 341 (362)
+|+.|+++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 5666666554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=0.00017 Score=55.25 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhc
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYN 304 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 304 (362)
...+|+.+.+.. .+.......+..+++|+.+.+.++ +.......|..+++++.+.+.+ .+. .++...+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--------~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--------SIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT---------EE-TTTTT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc--------cccccccc
Confidence 344455554442 233333334455555555555543 3323334455555566666644 222 33444444
Q ss_pred CcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCC
Q 037313 305 NIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLE 358 (362)
Q Consensus 305 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 358 (362)
..++++.+++..+ +...-...|... +++.+.+.. .+.......|.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 4466666666544 332334445555 666666554 33323345566666554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00046 Score=62.63 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=16.0
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCeEEcccc
Q 037313 227 PFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVN 261 (362)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (362)
++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666666532 2232222 35666666554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=9.6e-05 Score=59.45 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCc
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLF 130 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 130 (362)
....+||++|.+. . -+.|..++.|.+|.+.+|+|+..-|.--.-+++|..|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 4556777777765 2 223566677777777777777443332334566777777777663
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.31 E-value=0.00065 Score=51.91 Aligned_cols=122 Identities=19% Similarity=0.334 Sum_probs=49.2
Q ss_pred cccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCC
Q 037313 197 SIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK 276 (362)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 276 (362)
.+.++++|+.+.+.. .+. .+....+...++++.+.+..+ +.......+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555666666553 343 455555545556666666553 4333444455565666666654 333233345555667
Q ss_pred CCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCC
Q 037313 277 LKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYF 333 (362)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 333 (362)
++.+++..+ +. .++...+... +++.+.+.. .+...-...|.++++|
T Consensus 83 l~~i~~~~~-~~--------~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-IT--------EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--B--------EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-cc--------EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777776554 22 3444445553 666666654 2332334455555544
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.25 E-value=1.2e-05 Score=71.36 Aligned_cols=253 Identities=16% Similarity=0.068 Sum_probs=143.9
Q ss_pred CCcEEEEEcCCCC-CcccCCccC-CCCCCCCEEeCCCC-cccccCCcccc-CCCCCcEEEccCCCC-cccCCcccccccc
Q 037313 68 SQRVTALNISGLN-LTGTIPSEL-GDLSSLQTLDLSFH-WFSGSIPASIY-NMSSLLSINFTNNTL-FAELPPIFFFYLK 142 (362)
Q Consensus 68 ~~~l~~L~l~~~~-l~~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~~l~-~l~~L~~L~l~~n~~-~~~~p~~~~~~~~ 142 (362)
.+++++|++.++. +++..-.++ ..+++|++|++..| .++...-..++ .+++|++|+++.|.- ++.-
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g--------- 233 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG--------- 233 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc---------
Confidence 4567788887775 332211222 35788999999885 34433333333 589999999998853 2210
Q ss_pred CCcccCCCCCCCCCCCC--------------------------Cc-cccccCCcccccccccCCCcEEecCCccc-cccc
Q 037313 143 VPPTVGALPRIPCPPQD--------------------------TL-WLRQKKKAIKLRRFFWHEKKRVMAKNNFL-TGTI 194 (362)
Q Consensus 143 ~~~~~~~l~~L~~l~l~--------------------------~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~ 194 (362)
+.....++..++.+... .+ .+++ ..+...-....+|+.+..+++.. +...
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--EDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc--hHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 11111122223333222 22 1221 01111112456788888887643 2222
Q ss_pred Cccc-cCcCCCcEEEeecCc-CcccCchHHhhCCCCCcEEEcccCcccc--cCCccccCCCCCCeEEccccccc-ccc--
Q 037313 195 PSSI-FNLSSLSNLDLSYNN-LKGELPANICNNLPFLEILLLDENNFGR--RIPSTLSRCKHLQTLSLSVNGFS-GAI-- 267 (362)
Q Consensus 195 ~~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~-~~~-- 267 (362)
-..+ .+.++|+.+.++.++ +++.-...+..+.+.|+.+++..+.... .+...-.+++.|+++.++.+..- ++.
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 2233 377999999999886 3323333455578899999999885432 12233357899999999988753 221
Q ss_pred --CccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcc-cc-cCCccccCCCCCceEEe
Q 037313 268 --PKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMF-YG-DMPSDLANCSYFRILIL 338 (362)
Q Consensus 268 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i-~~-~~~~~~~~l~~L~~L~l 338 (362)
...-.....++.+.++++... ....-.... ..++|+.+++-+++- +. .+...-.++|++++..+
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i------~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLI------TDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhccccccccceeeecCCCCc------hHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 111234678899999998653 112222232 347899999999863 32 22233447777766543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00033 Score=58.67 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=18.0
Q ss_pred cCcCCCcEEEeecC--cCcccCchHHhhCCCCCcEEEcccCcc
Q 037313 199 FNLSSLSNLDLSYN--NLKGELPANICNNLPFLEILLLDENNF 239 (362)
Q Consensus 199 ~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~~ 239 (362)
..+++|+.|.++.| ...+.++.-+- .+|+|+++++++|++
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKI 103 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcc
Confidence 34445555555555 33333332222 235555555555544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.0013 Score=55.19 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=57.9
Q ss_pred CCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCcccc
Q 037313 85 IPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLR 164 (362)
Q Consensus 85 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 164 (362)
+....-.+..|+.+++.+..++. -..+..+++|++|.++.|.+...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~-------------------------------- 80 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVS-------------------------------- 80 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCccccc--------------------------------
Confidence 44444455566666666665542 12344667777777777743221
Q ss_pred ccCCcccccccccCCCcEEecCCccccc-ccCccccCcCCCcEEEeecCcCcccCc---hHHhhCCCCCcEEEcc
Q 037313 165 QKKKAIKLRRFFWHEKKRVMAKNNFLTG-TIPSSIFNLSSLSNLDLSYNNLKGELP---ANICNNLPFLEILLLD 235 (362)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~ 235 (362)
+.+.......++|+++++++|++.. .--..+..+.+|..|++.+|..+. +- ..+|.-+++|++|+-.
T Consensus 81 ---~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 81 ---GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ---ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 2222222233666666666666542 111223455666677777666552 21 2344455666665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=3.9e-05 Score=64.67 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCC
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTL 129 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 129 (362)
...|+.|+..|+++++. ....+|+.|++|.|+-|+|+.- ..+..|++|++|+|..|.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc
Confidence 45677888888887632 1235778888888888877622 2356677777777777766
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.42 E-value=0.00034 Score=66.45 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=12.9
Q ss_pred ccCCCCCCEEeCcCCccc
Q 037313 271 IGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 271 ~~~l~~L~~L~L~~n~l~ 288 (362)
+..+++++.+.+..+...
T Consensus 358 ~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HhcCCCcchhhhhhhhcc
Confidence 456788888888877643
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00017 Score=61.01 Aligned_cols=61 Identities=33% Similarity=0.542 Sum_probs=26.6
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEcccccccccc-CccccCCCCCCEEeCcCCcc
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAI-PKEIGNLTKLKSLYLSQNSL 287 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 287 (362)
.++.|+.|.|+-|.++..-| +..|++|++|.|..|.+.... ...+.++|+|+.|.|..|..
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 44444444444444432222 334445555555555443110 12233455555555555543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0025 Score=31.95 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=10.8
Q ss_pred CceEEeccccccccccccccc
Q 037313 333 FRILILGFNDFSGAIPKEIGN 353 (362)
Q Consensus 333 L~~L~l~~n~l~~~~~~~~~~ 353 (362)
|++|++++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 555666666555 45544443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0028 Score=31.76 Aligned_cols=18 Identities=50% Similarity=0.606 Sum_probs=9.2
Q ss_pred CCEEeCCCCcccccCCccc
Q 037313 95 LQTLDLSFHWFSGSIPASI 113 (362)
Q Consensus 95 L~~L~l~~n~~~~~~~~~l 113 (362)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.46 E-value=4.2e-05 Score=71.60 Aligned_cols=189 Identities=18% Similarity=0.130 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCcccC----CccCCCCCCCCEEeCCCCccccc----CCccccCC-CCCcEEEccCCCCcccCCccccccc
Q 037313 71 VTALNISGLNLTGTI----PSELGDLSSLQTLDLSFHWFSGS----IPASIYNM-SSLLSINFTNNTLFAELPPIFFFYL 141 (362)
Q Consensus 71 l~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~~~ 141 (362)
+..+.+.+|.+.... -..+...+.|+.|++++|.+.+. +.+.+... ..+++|++..|.+++. ...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~------g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE------GAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc------chH
Confidence 677888888887543 33556778899999999988743 22333333 5677888888887664 222
Q ss_pred cCCcccCCCCCCCCCCCCCccccccCC-ccccccc----ccCCCcEEecCCcccccc----cCccccCcCC-CcEEEeec
Q 037313 142 KVPPTVGALPRIPCPPQDTLWLRQKKK-AIKLRRF----FWHEKKRVMAKNNFLTGT----IPSSIFNLSS-LSNLDLSY 211 (362)
Q Consensus 142 ~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~l~~l~~-L~~L~l~~ 211 (362)
.+.+.+.....++.+++..|.+...+. .++..+. ....+++|.+.++.++.. +...+...+. ++.+++..
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 355566667788888888887642211 1122222 356788888888877633 2233344455 66688888
Q ss_pred CcCcccCchHHhh---CC-CCCcEEEcccCcccccCC----ccccCCCCCCeEEcccccccc
Q 037313 212 NNLKGELPANICN---NL-PFLEILLLDENNFGRRIP----STLSRCKHLQTLSLSVNGFSG 265 (362)
Q Consensus 212 n~l~~~~~~~~~~---~l-~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~ 265 (362)
|.+.+..-..+.. .. +.+++++++.|.++.... +.+..++.++++.++.|.+..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 8776432222221 23 456888888888765433 334556788888888888763
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.39 E-value=0.0015 Score=62.01 Aligned_cols=169 Identities=18% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCc-ccccc----cCccccCcCCCcEEEeecCc-CcccCchHHh
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNN-FLTGT----IPSSIFNLSSLSNLDLSYNN-LKGELPANIC 223 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~ 223 (362)
++.++.+.+..+..-.. ..........+.|+.|+++++ ..... .......+.+|+.|+++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITD-DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCCh-hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45666666655532210 002233445667777777652 11111 11223345677777777766 5544444444
Q ss_pred hCCCCCcEEEcccCc-ccccCCcc-ccCCCCCCeEEccccccccc--cCccccCCCCCCEEeCcCCc----ccCccc---
Q 037313 224 NNLPFLEILLLDENN-FGRRIPST-LSRCKHLQTLSLSVNGFSGA--IPKEIGNLTKLKSLYLSQNS----LQGIVN--- 292 (362)
Q Consensus 224 ~~l~~L~~L~l~~n~-~~~~~~~~-l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~----l~~~~~--- 292 (362)
..+++|++|.+..|. ++...-.. ...+++|++|+++++..... +......+++++.+.+.... ++....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 456777777766665 33322222 24566777777777665311 22223345555554443322 111100
Q ss_pred -ccc-cccChhhhcCcCCCcEEeccCCcc
Q 037313 293 -RLS-AELPANFYNNIPFLEELYLSKNMF 319 (362)
Q Consensus 293 -~~~-~~~~~~~~~~~~~L~~L~L~~n~i 319 (362)
... ..+.......+++++.+.+.++..
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 000 123333444556777777777663
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.0073 Score=48.87 Aligned_cols=83 Identities=18% Similarity=0.091 Sum_probs=52.4
Q ss_pred CCCCeEEccccccccccCccccCCCCCCEEeCcCCc-ccCcccccccccChhhhcCcCCCcEEeccCC-cccccCCcccc
Q 037313 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNS-LQGIVNRLSAELPANFYNNIPFLEELYLSKN-MFYGDMPSDLA 328 (362)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~ 328 (362)
..++.+|-+++.+..+..+.+..++.++.|.+.+|. +.+.. -+.+....++|+.|++++| +|+..-...+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-------L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-------LERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-------HHHhcccccchheeeccCCCeechhHHHHHH
Confidence 446777777777776666667777777777777764 22111 1111122377888888877 56655455667
Q ss_pred CCCCCceEEecc
Q 037313 329 NCSYFRILILGF 340 (362)
Q Consensus 329 ~l~~L~~L~l~~ 340 (362)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 777777776654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.49 E-value=0.051 Score=25.17 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=4.7
Q ss_pred CCceEEecccccc
Q 037313 332 YFRILILGFNDFS 344 (362)
Q Consensus 332 ~L~~L~l~~n~l~ 344 (362)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.28 E-value=0.00053 Score=64.32 Aligned_cols=190 Identities=19% Similarity=0.145 Sum_probs=115.4
Q ss_pred CCCCCCCCCCccccccC-CcccccccccCCCcEEecCCcccccccCcc----ccCc-CCCcEEEeecCcCcccCc----h
Q 037313 151 PRIPCPPQDTLWLRQKK-KAIKLRRFFWHEKKRVMAKNNFLTGTIPSS----IFNL-SSLSNLDLSYNNLKGELP----A 220 (362)
Q Consensus 151 ~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~----~ 220 (362)
..+..+.+..|.+...+ ..+...+...+.|+.|++++|.+++..... +... +.+++|++..|.+++... .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34677778888776321 123333456678888999888887442222 2232 567778888887764433 3
Q ss_pred HHhhCCCCCcEEEcccCcccc----cCCcccc----CCCCCCeEEccccccccc----cCccccCCCC-CCEEeCcCCcc
Q 037313 221 NICNNLPFLEILLLDENNFGR----RIPSTLS----RCKHLQTLSLSVNGFSGA----IPKEIGNLTK-LKSLYLSQNSL 287 (362)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l 287 (362)
.+. ..+.++.++++.|.+.. ..+..+. ...++++|.+.+|.++.. ....+...+. +..+++.+|.+
T Consensus 167 ~L~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLE-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHh-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 333 35678888888887632 1222222 467788888888887632 1223334444 66688888877
Q ss_pred cCcccccccccChhhhcCc-CCCcEEeccCCccccc----CCccccCCCCCceEEeccccccc
Q 037313 288 QGIVNRLSAELPANFYNNI-PFLEELYLSKNMFYGD----MPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
.+.. ...+.+.+ ... +.+++++++.|.|+.. +...+..+++++.+.++.|.+.+
T Consensus 246 ~d~g---~~~L~~~l-~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVG---VEKLLPCL-SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHH---HHHHHHHh-cccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 6431 11111111 112 5678899999988643 34456677788999999888864
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=0.025 Score=45.87 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=20.1
Q ss_pred CCcEEecCCcccccccCccccCcCCCcEEEeecCc
Q 037313 179 EKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNN 213 (362)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 213 (362)
.++.++-++..+..+.-+.+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34556666666655555555666666666655543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.95 E-value=0.21 Score=25.87 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=13.0
Q ss_pred CCCcEEEeecCcCcccCchHHh
Q 037313 202 SSLSNLDLSYNNLKGELPANIC 223 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~ 223 (362)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.95 E-value=0.21 Score=25.87 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=13.0
Q ss_pred CCCcEEEeecCcCcccCchHHh
Q 037313 202 SSLSNLDLSYNNLKGELPANIC 223 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~ 223 (362)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.74 E-value=0.074 Score=27.08 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=6.6
Q ss_pred CCCceEEeccccccc
Q 037313 331 SYFRILILGFNDFSG 345 (362)
Q Consensus 331 ~~L~~L~l~~n~l~~ 345 (362)
++|+.|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555544
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.92 E-value=0.0099 Score=49.25 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++.||++.|.+. .+-..++-+..|..|+++.|.+. ..|..+.....++.++...|+... .|.+.
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-----------~p~s~ 107 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-----------QPKSQ 107 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-----------CCccc
Confidence 578999999999876 33445666778888899888776 678888888888888888887754 67777
Q ss_pred CCCCCCCCCCCCCcccc
Q 037313 148 GALPRIPCPPQDTLWLR 164 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~ 164 (362)
+..+.++++++..+.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 77777777777776554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.96 E-value=0.03 Score=46.55 Aligned_cols=35 Identities=11% Similarity=-0.098 Sum_probs=16.4
Q ss_pred CcEEeccCCcccccCCccccCCCCCceEEecccccc
Q 037313 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
+..+++..|..+ ..|.++...+.++++++.+|.+.
T Consensus 90 ~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 90 TVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 344444444333 44555555555555555554443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.99 E-value=1.4 Score=41.59 Aligned_cols=37 Identities=32% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCCCCeEEccccccccc--cCccccCCCCCCEEeCcCC
Q 037313 249 RCKHLQTLSLSVNGFSGA--IPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n 285 (362)
+.+.+..+++++|++... +..--...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345566666777766421 1111123466667777766
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.70 E-value=2.2 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccc
Q 037313 93 SSLQTLDLSFHWFS 106 (362)
Q Consensus 93 ~~L~~L~l~~n~~~ 106 (362)
++|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.30 E-value=1.8 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=10.5
Q ss_pred CCceEEeccccccccccc
Q 037313 332 YFRILILGFNDFSGAIPK 349 (362)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~ 349 (362)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666667777666 4554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.74 E-value=3.6 Score=21.71 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=8.1
Q ss_pred CCCCEEeCCCCccc
Q 037313 93 SSLQTLDLSFHWFS 106 (362)
Q Consensus 93 ~~L~~L~l~~n~~~ 106 (362)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.95 E-value=4.1 Score=38.61 Aligned_cols=84 Identities=19% Similarity=0.040 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCcccc--CcCCCcEEEeecCcCcccCch------
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIF--NLSSLSNLDLSYNNLKGELPA------ 220 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~------ 220 (362)
+.+.+..+++++|++.... .+.......++|+.|+|++|..--....++. ....|++|.+.+|.+...+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld-~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD-ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchh-hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3444555555555553211 1112223456777777777721111122222 234567777777776644331
Q ss_pred HHhhCCCCCcEEE
Q 037313 221 NICNNLPFLEILL 233 (362)
Q Consensus 221 ~~~~~l~~L~~L~ 233 (362)
.+-..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2223456665554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.23 E-value=23 Score=33.14 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCcccc---CCCCCcEEEccCCCCcccCC
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIY---NMSSLLSINFTNNTLFAELP 134 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~p 134 (362)
..++++++++.|.+....|.++..=. --+.++.|+.+...-..+. .-..+.+++++.|.....+|
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIP 231 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccch
Confidence 45677788888877666554443210 0044444444321111110 01246677777776655544
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.66 E-value=12 Score=19.18 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=9.0
Q ss_pred CCCCcEEEccCCC
Q 037313 116 MSSLLSINFTNNT 128 (362)
Q Consensus 116 l~~L~~L~l~~n~ 128 (362)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777775
No 91
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=37.94 E-value=31 Score=17.75 Aligned_cols=14 Identities=7% Similarity=0.130 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 037313 2 IRFLLLHCLILSFM 15 (362)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (362)
.|+++++++++.+.
T Consensus 8 Kkil~~l~a~~~La 21 (25)
T PF08139_consen 8 KKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.05 E-value=44 Score=31.41 Aligned_cols=140 Identities=18% Similarity=0.077 Sum_probs=68.0
Q ss_pred CCcEEEeecCcCcccCchHHh--hCCCCCcEEEcccCcccc---cCCccccCCCCCCeEEccccccc----cccCc----
Q 037313 203 SLSNLDLSYNNLKGELPANIC--NNLPFLEILLLDENNFGR---RIPSTLSRCKHLQTLSLSVNGFS----GAIPK---- 269 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~l~----~~~~~---- 269 (362)
.+.+++++.|...+.+|..+- ..-..++.++.+...+.. ..+...++.++++..+++.|... .+.+.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 467788888887777775432 122335566665554421 12223345567777777776643 12222
Q ss_pred cccCCCCCCEEeCcCCcccCcccccccccChhhhcCc----CCCcEEeccCCcccc-cCCccccCCCCCceEEecccccc
Q 037313 270 EIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNI----PFLEELYLSKNMFYG-DMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~----~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
.+..-+++ +|++..+..... ..+.-+...- ..=-.+|+..|...+ ....+-..-..+++++...|.+.
T Consensus 295 ~fS~~~sg-hln~~~~~~psE------~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnld 367 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSE------KLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLD 367 (553)
T ss_pred ccCcCccc-ccccccccCchh------hhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccc
Confidence 23334455 566655543321 1111111100 011245566654432 22221112234889999988887
Q ss_pred ccccc
Q 037313 345 GAIPK 349 (362)
Q Consensus 345 ~~~~~ 349 (362)
|..-.
T Consensus 368 geg~~ 372 (553)
T KOG4242|consen 368 GEGGA 372 (553)
T ss_pred ccccc
Confidence 65443
No 93
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=29.82 E-value=60 Score=27.14 Aligned_cols=12 Identities=33% Similarity=0.119 Sum_probs=5.4
Q ss_pred CCcEEEcccCcc
Q 037313 228 FLEILLLDENNF 239 (362)
Q Consensus 228 ~L~~L~l~~n~~ 239 (362)
+++--.+.+|++
T Consensus 197 N~eGA~L~gcNf 208 (302)
T KOG1665|consen 197 NAEGASLKGCNF 208 (302)
T ss_pred ccccccccCcCC
Confidence 344444444544
No 94
>PRK09810 entericidin A; Provisional
Probab=24.64 E-value=99 Score=18.16 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCC
Q 037313 1 MIRFLLLHCLILSFMIASANT 21 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (362)
|+|-++.++++.++..+.+++
T Consensus 1 mMkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhh
Confidence 444444433444444444443
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.33 E-value=64 Score=37.46 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=25.4
Q ss_pred ecCCcccccccCccccCcCCCcEEEeecCcCc
Q 037313 184 MAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLK 215 (362)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 215 (362)
+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888666667778888999999888775
No 96
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=21.23 E-value=1.2e+02 Score=14.77 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 037313 1 MIRFLLLHCLILSFMIASA 19 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (362)
|.|+.+.......++...+
T Consensus 1 MKklaiMaa~s~~~~v~ta 19 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAVGTA 19 (21)
T ss_pred CchHHHHHHHHHHHHhccc
Confidence 5666666655555444443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.16 E-value=69 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.2
Q ss_pred EccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 257 SLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888555567778889999999988764
Done!