Query 037313
Match_columns 362
No_of_seqs 250 out of 3649
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-42 4.6E-47 309.3 20.8 296 22-345 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-41 3.9E-46 338.2 23.2 315 19-362 5-375 (768)
3 4eco_A Uncharacterized protein 100.0 1.8E-40 6.2E-45 322.7 17.2 321 24-362 28-464 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 5.5E-38 1.9E-42 311.2 18.5 252 21-288 264-632 (876)
5 3rgz_A Protein brassinosteroid 100.0 6.1E-36 2.1E-40 297.1 24.2 282 69-362 343-711 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1E-34 3.5E-39 271.9 25.2 284 68-362 29-402 (455)
7 4fcg_A Uncharacterized protein 100.0 2.2E-35 7.6E-40 264.3 16.0 280 22-344 23-314 (328)
8 2id5_A Lingo-1, leucine rich r 100.0 1.9E-33 6.7E-38 264.8 25.8 272 68-362 31-327 (477)
9 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-34 2.8E-38 252.5 15.0 245 93-362 50-298 (313)
10 3t6q_A CD180 antigen; protein- 100.0 9E-32 3.1E-36 260.9 26.8 280 68-362 32-407 (606)
11 2ft3_A Biglycan; proteoglycan, 100.0 7.6E-32 2.6E-36 242.1 23.6 278 55-362 31-327 (332)
12 1xku_A Decorin; proteoglycan, 100.0 1.3E-31 4.4E-36 240.4 25.1 279 55-362 29-326 (330)
13 2id5_A Lingo-1, leucine rich r 100.0 1.7E-32 5.9E-37 258.4 20.2 266 68-345 55-334 (477)
14 4eco_A Uncharacterized protein 100.0 6.6E-33 2.2E-37 269.6 16.3 287 68-362 205-573 (636)
15 3t6q_A CD180 antigen; protein- 100.0 5.1E-32 1.8E-36 262.6 22.3 280 70-362 255-554 (606)
16 3v47_A TOLL-like receptor 5B a 100.0 6.8E-31 2.3E-35 246.0 23.1 265 74-362 15-378 (455)
17 3oja_B Anopheles plasmodium-re 100.0 2E-31 6.8E-36 257.6 19.7 286 48-362 10-352 (597)
18 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-30 8.1E-35 250.9 26.9 124 68-193 31-168 (606)
19 3o6n_A APL1; leucine-rich repe 100.0 3.4E-31 1.2E-35 243.1 19.6 265 69-362 45-346 (390)
20 3j0a_A TOLL-like receptor 5; m 100.0 5.5E-31 1.9E-35 264.1 22.1 282 57-362 14-369 (844)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-31 1.3E-35 251.8 18.7 133 225-362 322-475 (520)
22 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-30 4.2E-35 252.9 22.3 97 68-164 55-166 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-30 4.2E-35 250.6 20.9 282 68-362 51-504 (562)
24 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-30 2.3E-34 250.9 23.1 273 68-362 24-360 (680)
25 4ecn_A Leucine-rich repeat pro 100.0 5.9E-31 2E-35 261.0 15.5 285 68-362 447-813 (876)
26 2z66_A Variable lymphocyte rec 100.0 6.9E-30 2.3E-34 226.7 20.1 243 55-344 5-261 (306)
27 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-31 2.2E-35 251.9 14.5 162 68-241 25-210 (549)
28 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-29 1.1E-33 246.1 26.1 290 71-362 250-591 (680)
29 1xku_A Decorin; proteoglycan, 100.0 5.6E-29 1.9E-33 223.2 24.6 262 70-362 32-300 (330)
30 3j0a_A TOLL-like receptor 5; m 100.0 7.1E-30 2.4E-34 256.1 19.6 278 68-361 47-387 (844)
31 2z80_A TOLL-like receptor 2, v 100.0 3.9E-30 1.3E-34 232.9 15.1 261 68-348 51-318 (353)
32 2z63_A TOLL-like receptor 4, v 100.0 3.6E-29 1.2E-33 240.8 22.0 145 68-214 27-189 (570)
33 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-29 1.6E-33 223.9 21.0 261 70-362 34-301 (332)
34 3zyi_A Leucine-rich repeat-con 100.0 5.7E-29 1.9E-33 232.7 21.8 228 70-344 76-303 (452)
35 3zyj_A Leucine-rich repeat-con 100.0 7.1E-29 2.4E-33 231.2 21.5 228 69-343 64-291 (440)
36 2z63_A TOLL-like receptor 4, v 100.0 1.2E-28 4.1E-33 237.1 23.7 97 68-164 51-162 (570)
37 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-29 2E-33 236.8 20.4 269 68-362 20-428 (520)
38 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-28 9.6E-33 237.3 25.6 122 68-191 51-186 (635)
39 4fcg_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 223.2 18.3 222 91-362 79-308 (328)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-29 1.9E-33 239.1 20.1 160 175-347 350-513 (562)
41 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-29 8.6E-34 240.8 16.3 255 68-344 49-423 (549)
42 2z66_A Variable lymphocyte rec 100.0 2.5E-28 8.7E-33 216.6 20.9 243 72-362 10-255 (306)
43 4fmz_A Internalin; leucine ric 100.0 6.8E-28 2.3E-32 217.6 23.4 265 68-362 65-340 (347)
44 4fmz_A Internalin; leucine ric 100.0 1E-27 3.6E-32 216.4 23.8 249 68-344 87-346 (347)
45 3o6n_A APL1; leucine-rich repe 100.0 7.5E-28 2.6E-32 220.9 22.7 249 68-346 68-354 (390)
46 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-28 1.1E-32 213.8 18.1 255 72-352 14-269 (285)
47 1wwl_A Monocyte differentiatio 100.0 4.8E-31 1.6E-35 234.7 0.0 267 48-345 22-310 (312)
48 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-28 6.4E-33 215.2 15.6 249 68-340 31-283 (285)
49 3oja_B Anopheles plasmodium-re 100.0 1.4E-27 4.8E-32 230.7 22.3 249 68-346 74-360 (597)
50 3zyi_A Leucine-rich repeat-con 100.0 2.8E-27 9.7E-32 221.2 22.9 240 72-362 57-297 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.8E-33 221.7 13.4 279 50-362 23-308 (353)
52 3o53_A Protein LRIM1, AGAP0063 100.0 3.8E-29 1.3E-33 222.9 8.0 245 69-348 34-280 (317)
53 3zyj_A Leucine-rich repeat-con 100.0 7.3E-27 2.5E-31 217.6 23.6 240 72-362 46-286 (440)
54 1o6v_A Internalin A; bacterial 100.0 7.7E-27 2.6E-31 219.1 22.0 263 68-362 67-360 (466)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4.2E-33 219.6 8.3 257 69-361 10-268 (317)
56 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-26 5.9E-31 215.5 22.2 252 69-349 42-304 (457)
57 2o6q_A Variable lymphocyte rec 99.9 1.3E-26 4.4E-31 201.8 19.1 216 54-288 2-218 (270)
58 1o6v_A Internalin A; bacterial 99.9 2.9E-26 9.8E-31 215.2 21.4 262 68-362 89-382 (466)
59 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-26 2.3E-30 211.5 21.5 262 68-362 63-346 (457)
60 3oja_A Leucine-rich immune mol 99.9 1.7E-27 5.7E-32 224.2 10.7 236 69-339 34-270 (487)
61 3oja_A Leucine-rich immune mol 99.9 3.5E-27 1.2E-31 222.0 11.0 236 89-360 30-267 (487)
62 4g8a_A TOLL-like receptor 4; l 99.9 2.7E-25 9.2E-30 216.2 23.3 147 75-238 37-184 (635)
63 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-26 2.2E-30 218.0 17.2 257 48-362 13-291 (622)
64 1jl5_A Outer protein YOPM; leu 99.9 6.6E-25 2.3E-29 204.6 22.6 244 69-354 111-382 (454)
65 1wwl_A Monocyte differentiatio 99.9 3.9E-27 1.3E-31 209.4 5.5 225 70-321 64-310 (312)
66 2z62_A TOLL-like receptor 4, v 99.9 7.3E-25 2.5E-29 191.4 19.0 212 84-320 21-237 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-27 4.1E-32 224.3 -1.2 280 70-362 86-405 (461)
68 1jl5_A Outer protein YOPM; leu 99.9 1.9E-25 6.6E-30 208.2 12.2 253 68-362 10-284 (454)
69 2z62_A TOLL-like receptor 4, v 99.9 3.4E-24 1.2E-28 187.1 18.6 207 68-289 27-238 (276)
70 3rfs_A Internalin B, repeat mo 99.9 2.7E-24 9.3E-29 187.3 17.0 143 174-332 105-247 (272)
71 3g06_A SSPH2 (leucine-rich rep 99.9 7.1E-24 2.4E-28 203.8 19.3 238 69-355 61-308 (622)
72 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6.1E-28 181.9 19.9 203 93-320 16-218 (270)
73 1p9a_G Platelet glycoprotein I 99.9 1.8E-23 6.2E-28 183.6 18.7 204 88-320 5-208 (290)
74 3rfs_A Internalin B, repeat mo 99.9 9.1E-24 3.1E-28 184.0 16.4 224 74-356 24-247 (272)
75 2ast_B S-phase kinase-associat 99.9 5.6E-26 1.9E-30 204.1 1.5 269 54-353 34-315 (336)
76 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-26 5.4E-31 216.7 -2.2 284 69-362 56-377 (461)
77 1p9a_G Platelet glycoprotein I 99.9 3.9E-23 1.3E-27 181.5 18.7 200 68-288 9-208 (290)
78 2ca6_A RAN GTPase-activating p 99.9 1.3E-25 4.4E-30 205.7 2.0 259 84-348 23-320 (386)
79 3m19_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 177.9 16.1 191 55-289 3-193 (251)
80 3goz_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 200.8 3.4 256 74-346 3-299 (362)
81 4glp_A Monocyte differentiatio 99.9 4.9E-24 1.7E-28 189.3 8.9 230 93-345 64-308 (310)
82 3goz_A Leucine-rich repeat-con 99.9 2.1E-24 7E-29 195.9 5.1 254 97-362 2-291 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 5.4E-23 1.9E-27 175.6 12.9 196 70-317 32-236 (239)
84 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.5E-29 198.4 1.9 245 108-362 23-310 (386)
85 2ast_B S-phase kinase-associat 99.9 9.7E-24 3.3E-28 189.5 6.2 236 69-329 70-315 (336)
86 4glp_A Monocyte differentiatio 99.9 4.6E-23 1.6E-27 183.0 10.5 229 69-321 64-308 (310)
87 1h6u_A Internalin H; cell adhe 99.9 8.8E-22 3E-26 174.4 18.0 191 69-321 41-231 (308)
88 2xwt_C Thyrotropin receptor; s 99.9 2.6E-22 8.9E-27 171.3 12.9 199 108-361 25-232 (239)
89 3cvr_A Invasion plasmid antige 99.9 2.6E-22 9E-27 190.7 12.7 153 48-239 34-192 (571)
90 3m19_A Variable lymphocyte rec 99.9 2.9E-21 9.9E-26 166.1 17.3 180 118-322 15-194 (251)
91 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6E-26 172.5 16.0 169 68-264 62-230 (308)
92 2o6s_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 161.0 12.5 186 55-276 5-190 (208)
93 3cvr_A Invasion plasmid antige 99.9 9.1E-21 3.1E-25 180.2 17.1 186 94-329 60-252 (571)
94 3ogk_B Coronatine-insensitive 99.9 3.7E-23 1.3E-27 199.8 -0.6 192 170-362 285-520 (592)
95 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 4.2E-25 170.2 13.2 242 57-341 9-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 154.8 14.7 162 178-355 28-189 (208)
97 4ay9_X Follicle-stimulating ho 99.8 6.6E-20 2.3E-24 165.4 14.7 236 96-362 12-253 (350)
98 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.3E-23 146.8 16.5 163 48-264 10-172 (229)
99 3ogk_B Coronatine-insensitive 99.8 2.1E-21 7.1E-26 187.5 -1.8 279 69-357 164-540 (592)
100 1h6t_A Internalin B; cell adhe 99.8 8E-19 2.7E-23 154.0 13.6 188 96-321 27-214 (291)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.8E-23 146.1 14.5 152 182-344 15-166 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.1E-23 146.5 13.4 153 181-345 14-166 (220)
103 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.3E-23 151.0 15.7 168 69-264 46-213 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 1.9E-18 6.4E-23 145.3 14.3 153 154-321 14-166 (220)
105 1m9s_A Internalin B; cell inva 99.8 2E-18 6.8E-23 165.8 15.8 171 68-266 42-212 (605)
106 1m9s_A Internalin B; cell inva 99.8 2.2E-18 7.4E-23 165.5 16.0 190 71-290 23-212 (605)
107 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.2E-23 157.1 13.3 152 120-288 21-176 (361)
108 4b8c_D Glucose-repressible alc 99.8 3.7E-20 1.3E-24 181.9 2.7 221 25-268 131-358 (727)
109 4ezg_A Putative uncharacterize 99.8 2.2E-18 7.5E-23 142.4 13.0 155 174-345 40-195 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 8.4E-18 2.9E-22 141.3 16.0 151 73-288 15-166 (220)
111 4ezg_A Putative uncharacterize 99.8 3.7E-18 1.3E-22 141.0 12.0 153 90-287 41-193 (197)
112 2xot_A Amphoterin-induced prot 99.8 3.3E-18 1.1E-22 154.9 12.6 175 73-264 22-202 (361)
113 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.4E-22 140.6 15.9 134 178-321 40-173 (229)
114 2p1m_B Transport inhibitor res 99.8 3.3E-20 1.1E-24 179.1 -1.5 57 306-362 455-513 (594)
115 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.9E-24 173.3 0.0 197 148-362 346-567 (567)
116 2p1m_B Transport inhibitor res 99.7 5.5E-20 1.9E-24 177.6 -3.2 109 250-362 371-488 (594)
117 1dce_A Protein (RAB geranylger 99.7 3.7E-20 1.3E-24 176.7 -4.6 214 90-337 346-566 (567)
118 1xeu_A Internalin C; cellular 99.7 5.1E-18 1.7E-22 146.6 7.8 168 70-266 20-187 (263)
119 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 144.0 10.3 147 176-344 39-185 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.4E-21 130.1 11.1 133 181-324 11-143 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.3E-21 128.2 9.4 131 203-344 25-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 4.8E-16 1.6E-20 124.8 10.8 91 197-288 66-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.7 4.3E-16 1.5E-20 122.5 9.6 126 227-362 17-147 (149)
124 4b8c_D Glucose-repressible alc 99.6 4.7E-17 1.6E-21 159.9 4.0 182 84-288 215-404 (727)
125 3sb4_A Hypothetical leucine ri 99.6 6.6E-16 2.3E-20 137.9 10.4 102 250-361 225-327 (329)
126 1w8a_A SLIT protein; signaling 99.6 1.9E-15 6.4E-20 124.1 12.2 129 154-289 11-140 (192)
127 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.7E-20 121.7 12.2 130 181-322 10-139 (177)
128 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 121.7 7.7 128 202-339 17-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 122.7 11.6 128 181-321 13-140 (193)
130 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.8E-19 119.5 13.4 127 154-288 13-139 (193)
131 3sb4_A Hypothetical leucine ri 99.6 7.6E-15 2.6E-19 131.1 12.7 246 68-338 48-328 (329)
132 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 118.1 12.3 129 205-345 10-138 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.6 9.9E-15 3.4E-19 118.1 9.7 135 198-345 15-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.6 7.7E-17 2.6E-21 133.2 -3.9 154 175-344 15-185 (198)
135 4fdw_A Leucine rich hypothetic 99.6 4E-13 1.4E-17 122.7 20.4 242 86-361 129-376 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.4E-19 116.4 10.2 124 225-362 17-147 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.8E-21 131.6 -4.8 132 148-288 15-153 (198)
138 3un9_A NLR family member X1; l 99.5 1.8E-15 6E-20 137.0 -2.4 111 178-288 101-224 (372)
139 2r9u_A Variable lymphocyte rec 99.4 6E-13 2.1E-17 107.2 10.9 106 204-321 14-119 (174)
140 3g39_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 106.2 11.2 108 203-322 10-117 (170)
141 3g39_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 106.0 9.7 106 180-289 11-116 (170)
142 4fdw_A Leucine rich hypothetic 99.4 2E-11 6.8E-16 111.5 19.0 242 70-344 136-383 (401)
143 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 6E-17 104.4 9.9 105 181-289 15-119 (174)
144 3un9_A NLR family member X1; l 99.4 3.1E-14 1E-18 128.9 -1.1 112 178-290 126-254 (372)
145 2ifg_A High affinity nerve gro 99.2 1E-10 3.4E-15 105.0 10.0 104 181-288 11-116 (347)
146 2ifg_A High affinity nerve gro 99.2 1.2E-10 4.1E-15 104.5 10.5 105 205-321 11-117 (347)
147 4fs7_A Uncharacterized protein 99.0 3.5E-08 1.2E-12 90.0 21.8 102 246-360 292-393 (394)
148 4fs7_A Uncharacterized protein 99.0 3E-08 1E-12 90.4 19.2 219 110-362 155-373 (394)
149 2ra8_A Uncharacterized protein 99.0 1E-10 3.6E-15 104.9 2.7 182 68-289 106-321 (362)
150 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.3E-14 97.9 7.0 167 174-351 135-327 (362)
151 4gt6_A Cell surface protein; l 98.9 3.1E-07 1.1E-11 83.7 20.7 103 247-361 261-363 (394)
152 4gt6_A Cell surface protein; l 98.8 4E-07 1.4E-11 82.9 18.3 127 220-361 258-384 (394)
153 4h09_A Hypothetical leucine ri 98.6 4.4E-06 1.5E-10 75.6 20.5 104 225-339 238-341 (379)
154 1io0_A Tropomodulin; LRR prote 98.6 9.4E-09 3.2E-13 83.3 2.2 91 250-344 64-164 (185)
155 3rw6_A Nuclear RNA export fact 98.6 3.3E-09 1.1E-13 90.5 -1.2 24 55-78 76-99 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 2.4E-08 8.1E-13 80.9 2.3 90 227-320 65-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.2E-07 4.2E-12 80.8 2.3 41 249-289 168-210 (267)
158 4h09_A Hypothetical leucine ri 98.3 7.5E-05 2.6E-09 67.4 20.0 140 178-331 217-356 (379)
159 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.7E-11 69.7 3.4 83 203-286 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 8.6E-07 2.9E-11 70.2 2.8 58 228-285 62-124 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1E-05 3.6E-10 65.2 2.5 11 201-211 40-50 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 4.3E-05 1.5E-09 61.6 3.2 117 224-344 38-170 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0072 2.5E-07 45.2 6.7 57 73-131 12-69 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0049 1.7E-07 46.2 5.6 57 254-320 11-68 (130)
165 2lz0_A Uncharacterized protein 45.2 42 0.0014 23.0 5.1 14 246-259 38-51 (100)
166 2lz0_A Uncharacterized protein 45.1 29 0.00099 23.9 4.2 46 239-285 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-42 Score=309.32 Aligned_cols=296 Identities=26% Similarity=0.410 Sum_probs=249.9
Q ss_pred CCchhHHHHHHHHHhcCCCCccchhcCCCCCCCCCcc--eeeeeecCCC--CcEEEEEcCCCCCcc--cCCccCCCCCCC
Q 037313 22 TSITTDQQALLALKGHVTDDLAKKLARNWDTSSFVCN--WTGITCDVRS--QRVTALNISGLNLTG--TIPSELGDLSSL 95 (362)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~c~~~~--~~l~~L~l~~~~l~~--~~~~~l~~l~~L 95 (362)
.|.++|..|+++||+++. ++. .. .+|..+.+||. |.||.|+... ++|++|+++++.+++ .+|..+.++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l-~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GG-TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cc-cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 366789999999999994 554 44 89988889998 9999998643 799999999999998 899999999999
Q ss_pred CEEeCCC-CcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccc
Q 037313 96 QTLDLSF-HWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRR 174 (362)
Q Consensus 96 ~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 174 (362)
++|++++ |.+.+.+|..++++++|++|++++|.+++. +|..+.++++|++|++++|.++ +.++..+
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~Ls~N~l~---~~~p~~~ 145 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----------IPDFLSQIKTLVTLDFSYNALS---GTLPPSI 145 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----------CCGGGGGCTTCCEEECCSSEEE---SCCCGGG
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc----------CCHHHhCCCCCCEEeCCCCccC---CcCChHH
Confidence 9999995 999999999999999999999999999876 7778888999999999999887 6777788
Q ss_pred cccCCCcEEecCCcccccccCccccCcC-CCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCC
Q 037313 175 FFWHEKKRVMAKNNFLTGTIPSSIFNLS-SLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHL 253 (362)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (362)
..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+. .++ |++|++++|.+++..|..+..+++|
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 8888899999999888888888888887 888999988888877777665 555 8888888888888888888888888
Q ss_pred CeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCC
Q 037313 254 QTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYF 333 (362)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 333 (362)
++|++++|.+++.++. +..+++|+.|++++|.+++ .+|..+. .+++|+.|++++|+++|.+|.. ..+++|
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-------~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-------TLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-------CCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-------cCChHHh-cCcCCCEEECcCCcccccCCCC-cccccc
Confidence 8888888888866554 6778888888888888753 4555443 3488888888888888888876 778888
Q ss_pred ceEEecccc-ccc
Q 037313 334 RILILGFND-FSG 345 (362)
Q Consensus 334 ~~L~l~~n~-l~~ 345 (362)
+.+++++|+ +.|
T Consensus 294 ~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 294 DVSAYANNKCLCG 306 (313)
T ss_dssp CGGGTCSSSEEES
T ss_pred ChHHhcCCCCccC
Confidence 888888886 554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-41 Score=338.22 Aligned_cols=315 Identities=30% Similarity=0.407 Sum_probs=190.9
Q ss_pred cCCCCchhHHHHHHHHHhcCCCCccchhcCCCCCCCCCcceeeeeecCCCCcEEEEEcCCCCCccc---CC---------
Q 037313 19 ANTTSITTDQQALLALKGHVTDDLAKKLARNWDTSSFVCNWTGITCDVRSQRVTALNISGLNLTGT---IP--------- 86 (362)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~---~~--------- 86 (362)
+++++.++|++|+++||+++. ||. .+ .+|..+.+||.|.||+|+ .++|++|+++++.+.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l-~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LL-PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SS-TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-cc-cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 344446789999999999995 665 55 899988899999999998 58999999999998876 44
Q ss_pred --------------ccCCCCCCCCEEeCCCCcccccCCc--cccCCCCCcEEEccCCCCcccCCccccccccCCcccCCC
Q 037313 87 --------------SELGDLSSLQTLDLSFHWFSGSIPA--SIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGAL 150 (362)
Q Consensus 87 --------------~~l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l 150 (362)
+.++++++|++|++++|.+++.+|. .++++++|++|++++|.+.+.+|..+ +.++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---------~~~l 150 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG---------GLKL 150 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS---------CCCC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH---------hccC
Confidence 4566667777777777777766666 67777777777777777665533211 1334
Q ss_pred CCCCCCCCCCccccccCCccccc---c----------------------cccCCCcEEecCCcccccccCccccCcCCCc
Q 037313 151 PRIPCPPQDTLWLRQKKKAIKLR---R----------------------FFWHEKKRVMAKNNFLTGTIPSSIFNLSSLS 205 (362)
Q Consensus 151 ~~L~~l~l~~~~~~~~~~~~~~~---~----------------------~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 205 (362)
++|++|++++|.++ +..+.. + ..+++|++|++++|.+++..|. +.++++|+
T Consensus 151 ~~L~~L~Ls~n~l~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 151 NSLEVLDLSANSIS---GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TTCSEEECCSSCCE---EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCEEECCCCccC---CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 44444444444433 111111 2 3445555555555555544444 55555555
Q ss_pred EEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCC-CCCCEEeCcC
Q 037313 206 NLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNL-TKLKSLYLSQ 284 (362)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~ 284 (362)
+|++++|.+.+.+|..+. .+++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..+... ++|+.|++++
T Consensus 227 ~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp EEECCSSCCCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred EEECcCCcCCCcccHHHh-cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 555555555544444333 5555555555555555444433 45555555555555555555555443 5566666666
Q ss_pred CcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCcc-ccCCCCCceEEecccccccccccccccCC-CCCeeeC
Q 037313 285 NSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD-LANCSYFRILILGFNDFSGAIPKEIGNMT-KLENLDL 362 (362)
Q Consensus 285 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 362 (362)
|.+++ .+|..+ ..+++|++|++++|+++|.+|.. +..+++|++|++++|.+++.+|..+.+++ +|+.|++
T Consensus 304 n~l~~-------~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 304 NHFYG-------AVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp SEEEE-------CCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CcCCC-------ccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 55532 333333 23366666666666666555544 56666666666666666666666666665 6666553
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-40 Score=322.73 Aligned_cols=321 Identities=19% Similarity=0.278 Sum_probs=251.3
Q ss_pred chhHHHHHHHHHhcCCCCccchh------cCCCCCCCCCcce---eeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCC
Q 037313 24 ITTDQQALLALKGHVTDDLAKKL------ARNWDTSSFVCNW---TGITCDVRSQRVTALNISGLNLTGTIPSELGDLSS 94 (362)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~------~~~w~~~~~~c~~---~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~ 94 (362)
...|+.|+.+++.++.++.+... ..+|..+.++|.| .||+|+. .++|+.|++++++++|.+|+.++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence 45799999999999865533211 1379988999999 9999987 489999999999999999999999999
Q ss_pred CCEEeCCCCc----------------------------------------------------------------------
Q 037313 95 LQTLDLSFHW---------------------------------------------------------------------- 104 (362)
Q Consensus 95 L~~L~l~~n~---------------------------------------------------------------------- 104 (362)
|++|++++|.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 9999999884
Q ss_pred --------ccccCCccccCCCCCcEEEccCCCCccc-CCccc------cccccCCcccC--CCCCCCCCCCCCccccccC
Q 037313 105 --------FSGSIPASIYNMSSLLSINFTNNTLFAE-LPPIF------FFYLKVPPTVG--ALPRIPCPPQDTLWLRQKK 167 (362)
Q Consensus 105 --------~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~------~~~~~~~~~~~--~l~~L~~l~l~~~~~~~~~ 167 (362)
+++ +|..++++++|++|++++|.+++. ++..+ .....+|..++ ++++|++|++++|.+.
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--- 262 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--- 262 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC---
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC---
Confidence 334 888999999999999999999883 22111 11112778888 8999999999999887
Q ss_pred CcccccccccCCCcEEecCCcc-ccc-ccCccccCc------CCCcEEEeecCcCcccCch--HHhhCCCCCcEEEcccC
Q 037313 168 KAIKLRRFFWHEKKRVMAKNNF-LTG-TIPSSIFNL------SSLSNLDLSYNNLKGELPA--NICNNLPFLEILLLDEN 237 (362)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n 237 (362)
+.+|..+..+++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+. .+++|++|++++|
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCC
Confidence 7888888889999999999998 888 788887776 89999999999988 7887 554 8889999999999
Q ss_pred cccccCCccccCCCCCCeEEccccccccccCccccCCCC-CCEEeCcCCcccCcccccccccChhhhcC-cCCCcEEecc
Q 037313 238 NFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK-LKSLYLSQNSLQGIVNRLSAELPANFYNN-IPFLEELYLS 315 (362)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-~~~L~~L~L~ 315 (362)
.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+... +++|+.|+++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--------~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--------SCCSCCCTTCSSCEEEEECC
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--------ccchhhhhcccCccCEEECc
Confidence 9887888 7888888999999999888 78888888888 999999988876 344332211 2367777777
Q ss_pred CCcccccCCcccc-------CCCCCceEEeccccccccccc-ccccCCCCCeeeC
Q 037313 316 KNMFYGDMPSDLA-------NCSYFRILILGFNDFSGAIPK-EIGNMTKLENLDL 362 (362)
Q Consensus 316 ~n~i~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l 362 (362)
+|++++..|..+. .+++|++|++++|.++ .+|. .+..+++|+.|++
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 7777766666666 5666777777777776 3443 3445666666654
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-38 Score=311.18 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=207.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCccchhcCCCCCC-----CCC--cce------------eeeeecCCCCcEEEEEcCCCCC
Q 037313 21 TTSITTDQQALLALKGHVTDDLAKKLARNWDTS-----SFV--CNW------------TGITCDVRSQRVTALNISGLNL 81 (362)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~-----~~~--c~~------------~g~~c~~~~~~l~~L~l~~~~l 81 (362)
++....|..||++|++++. +| +|..+ .++ |.| .||.|+. .++|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHcC-CC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 3445679999999999994 44 34332 245 999 9999987 68999999999999
Q ss_pred cccCCccCCCCCCCCEEeC-CCCccccc----------------------------------------------------
Q 037313 82 TGTIPSELGDLSSLQTLDL-SFHWFSGS---------------------------------------------------- 108 (362)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l-~~n~~~~~---------------------------------------------------- 108 (362)
.|.+|+.+++|++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77755433
Q ss_pred ------------------------CCccccCCCCCcEEEccCCCCcc-cCCccc------cccccCCcccC--CCCCCCC
Q 037313 109 ------------------------IPASIYNMSSLLSINFTNNTLFA-ELPPIF------FFYLKVPPTVG--ALPRIPC 155 (362)
Q Consensus 109 ------------------------~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~------~~~~~~~~~~~--~l~~L~~ 155 (362)
+|..++++++|++|++++|.+++ .+|..+ ...+.+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999988 232221 01113778877 8999999
Q ss_pred CCCCCccccccCCcccccccccCCCcEEecCCcc-ccc-ccCccccCcC-------CCcEEEeecCcCcccCch--HHhh
Q 037313 156 PPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNF-LTG-TIPSSIFNLS-------SLSNLDLSYNNLKGELPA--NICN 224 (362)
Q Consensus 156 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~ 224 (362)
|++++|.+. +.+|..+..+++|+.|++++|. +++ .+|..+..++ +|++|++++|.+. .+|. .+.
T Consensus 496 L~Ls~N~l~---~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~- 570 (876)
T 4ecn_A 496 VELYNCPNM---TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ- 570 (876)
T ss_dssp EEEESCTTC---CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-
T ss_pred EECcCCCCC---ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-
Confidence 999999887 7888888889999999999997 887 7777666555 8999999999998 8887 554
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCC-CCEEeCcCCccc
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK-LKSLYLSQNSLQ 288 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~ 288 (362)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 8889999999999887 777 7888899999999999988 78888888888 999999988876
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.1e-36 Score=297.12 Aligned_cols=282 Identities=32% Similarity=0.489 Sum_probs=143.7
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCC-CCCEEeCCCCcccccCCccccC--CCCCcEEEccCCCCcccCCccc--------
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLS-SLQTLDLSFHWFSGSIPASIYN--MSSLLSINFTNNTLFAELPPIF-------- 137 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~~~~~~p~~~-------- 137 (362)
.++++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 4455555555555555555554444 4555555555444444444433 4444444444444444322111
Q ss_pred ------cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeec
Q 037313 138 ------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSY 211 (362)
Q Consensus 138 ------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 211 (362)
.....+|..++.+++|++|++++|.+. +.++..+..+++|++|++++|.+++.+|..+.++++|++|++++
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE---GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCC---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCccc---CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 000114444444555555555555444 44444444455555555555555555555555555555555555
Q ss_pred CcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccc--------------------
Q 037313 212 NNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEI-------------------- 271 (362)
Q Consensus 212 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------------------- 271 (362)
|.+.+.+|..+. .+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+
T Consensus 500 N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 500 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 555544444443 44555555555555544555555555555555555555444443322
Q ss_pred --------------------------------------------------cCCCCCCEEeCcCCcccCcccccccccChh
Q 037313 272 --------------------------------------------------GNLTKLKSLYLSQNSLQGIVNRLSAELPAN 301 (362)
Q Consensus 272 --------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 301 (362)
+.+++|+.|++++|.+++ .+|..
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-------~ip~~ 651 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-------YIPKE 651 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-------CCCGG
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-------cCCHH
Confidence 112344455555554432 44544
Q ss_pred hhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 302 FYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 302 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
+.. ++.|+.|++++|+++|.+|..++.+++|+.|++++|+++|.+|..+.++++|+.|++
T Consensus 652 l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 652 IGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp GGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred Hhc-cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 433 366666666666666666666666666666666666666666666666666666654
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-34 Score=271.94 Aligned_cols=284 Identities=19% Similarity=0.156 Sum_probs=202.6
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccC-CccccCCCCCcEEEccCCCCcccCCcccc--------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSI-PASIYNMSSLLSINFTNNTLFAELPPIFF-------- 138 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-------- 138 (362)
..++++|++++|.+++..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..+.
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 367999999999999877888999999999999999887665 56688899999999999998776333220
Q ss_pred ------ccccCCcc--cCCCCCCCCCCCCCccccccCCccccc-ccccCCCcEEecCCcccccccCccccCc--------
Q 037313 139 ------FYLKVPPT--VGALPRIPCPPQDTLWLRQKKKAIKLR-RFFWHEKKRVMAKNNFLTGTIPSSIFNL-------- 201 (362)
Q Consensus 139 ------~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l-------- 201 (362)
....+|.. +..+++|++|++++|.+. +..+.. +..+++|++|++++|.+++..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC---SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccC---ccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 00001111 444455555555555444 332332 4455555666665555554444433322
Q ss_pred --------------------------CCCcEEEeecCcCcccCchHHhhC------------------------------
Q 037313 202 --------------------------SSLSNLDLSYNNLKGELPANICNN------------------------------ 225 (362)
Q Consensus 202 --------------------------~~L~~L~l~~n~l~~~~~~~~~~~------------------------------ 225 (362)
++|++|++++|.+.+..+..+...
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 345555555555544333332211
Q ss_pred --------CCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccc
Q 037313 226 --------LPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAE 297 (362)
Q Consensus 226 --------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 297 (362)
.++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~ 337 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--------S 337 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------E
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC--------C
Confidence 146777777777777777888888999999999999998888888888999999999999876 4
Q ss_pred cChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 298 LPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
++...+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 44455566689999999999999888999999999999999999999766667889999999875
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.2e-35 Score=264.26 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=217.8
Q ss_pred CCchhHHHHHHHHHhcCCCCccchhcCCC----CCCCCCcceeeeeecC--------CCCcEEEEEcCCCCCcccCCccC
Q 037313 22 TSITTDQQALLALKGHVTDDLAKKLARNW----DTSSFVCNWTGITCDV--------RSQRVTALNISGLNLTGTIPSEL 89 (362)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~c~~--------~~~~l~~L~l~~~~l~~~~~~~l 89 (362)
+...++..++++|+..+..++.++. ..| ....++|.|.|+.|.. ...+|+.|++++|+++ .+|+.+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~-~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHH-HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhh-hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3456789999999998866776666 788 4567889999999952 2578999999999998 889989
Q ss_pred CCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCc
Q 037313 90 GDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKA 169 (362)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 169 (362)
.++++|++|++++|.++ .+|..++++++|++|++++|.++ . +|..++.+++|++|++++|.+. +.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~----------lp~~l~~l~~L~~L~L~~n~~~---~~ 165 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-A----------LPASIASLNRLRELSIRACPEL---TE 165 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-C----------CCGGGGGCTTCCEEEEEEETTC---CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-c----------CcHHHhcCcCCCEEECCCCCCc---cc
Confidence 99999999999999999 89999999999999999999986 3 5556666666655555555443 33
Q ss_pred ccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccC
Q 037313 170 IKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSR 249 (362)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 249 (362)
++..+.. ......+.++++|++|++++|.++ .+|..+. .+++|++|++++|.+++ +|..+..
T Consensus 166 ~p~~~~~---------------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 166 LPEPLAS---------------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp CCSCSEE---------------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cChhHhh---------------ccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-Cchhhcc
Confidence 3322211 011122345888888888888888 7777664 78888888888888864 5666888
Q ss_pred CCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccC
Q 037313 250 CKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLAN 329 (362)
Q Consensus 250 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 329 (362)
+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+ .+|..+. .+++|+.|++++|.+.+.+|..+..
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-------~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-------TLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-------BCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-------hcchhhh-cCCCCCEEeCCCCCchhhccHHHhh
Confidence 8888888888888888888888888888888888887643 5665543 4588999999998888889999999
Q ss_pred CCCCceEEecccccc
Q 037313 330 CSYFRILILGFNDFS 344 (362)
Q Consensus 330 l~~L~~L~l~~n~l~ 344 (362)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999988876654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=264.84 Aligned_cols=272 Identities=19% Similarity=0.199 Sum_probs=211.6
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCc-c
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPP-T 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~-~ 146 (362)
..+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+.++++|++|++++|.+++ +|. .
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~ 99 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-----------IPLGV 99 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-----------CCTTS
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-----------cCccc
Confidence 4689999999999998778899999999999999999998889999999999999999999876 443 5
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCC
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNL 226 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (362)
+.++++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l 175 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175 (477)
T ss_dssp STTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTC
T ss_pred ccCCCCCCEEECCCCccc---cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhccc
Confidence 788999999999999987 556667788899999999999999888888999999999999999998 6676666688
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCc------------------------cccCCCCCCEEeC
Q 037313 227 PFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPK------------------------EIGNLTKLKSLYL 282 (362)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~L 282 (362)
++|++|++++|.+.+..+..+..+++|++|++++|...+.++. .+..+++|+.|++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 9999999999988777776777777777777776655444443 3445555555555
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
++|.++ .++...+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus 256 s~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 256 SYNPIS--------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CSSCCC--------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred CCCcCC--------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 555544 333333444566777777777776666667777777777777777777555556667777777654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-34 Score=252.54 Aligned_cols=245 Identities=24% Similarity=0.343 Sum_probs=224.1
Q ss_pred CCCCEEeCCCCcccc--cCCccccCCCCCcEEEccC-CCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCc
Q 037313 93 SSLQTLDLSFHWFSG--SIPASIYNMSSLLSINFTN-NTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKA 169 (362)
Q Consensus 93 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 169 (362)
.++++|++++|.+++ .+|..+.++++|++|++++ |.+.+. +|..++++++|++|++++|.++ +.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~----------~p~~l~~l~~L~~L~Ls~n~l~---~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----------IPPAIAKLTQLHYLYITHTNVS---GA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC----------CCGGGGGCTTCSEEEEEEECCE---EE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc----------CChhHhcCCCCCEEECcCCeeC---Cc
Confidence 589999999999999 8999999999999999995 888876 7888999999999999999998 78
Q ss_pred ccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC-CCcEEEcccCcccccCCcccc
Q 037313 170 IKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP-FLEILLLDENNFGRRIPSTLS 248 (362)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~ 248 (362)
++..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. .++ +|++|++++|++++..|..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHh
Confidence 888899999999999999999999999999999999999999999989998887 676 999999999999989999998
Q ss_pred CCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCcccc
Q 037313 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLA 328 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 328 (362)
.++ |++|++++|.+++..|..+..+++|+.|++++|.+++. ++. +..+++|++|++++|++++.+|..+.
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-------LGK--VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-------GGG--CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-------cCc--ccccCCCCEEECcCCcccCcCChHHh
Confidence 887 99999999999999999999999999999999998642 222 33458999999999999999999999
Q ss_pred CCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 329 NCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 329 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.+++|+.|++++|+++|.+|.. ..+++|+.+++
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 9999999999999999998886 78888888764
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9e-32 Score=260.85 Aligned_cols=280 Identities=20% Similarity=0.151 Sum_probs=165.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+.++++|++++|.+++..|..|+++++|++|++++|++++..|..|.++++|++|++++|.+++. .|..+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~ 101 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM----------AETAL 101 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE----------CTTTT
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc----------Chhhh
Confidence 46899999999999977788999999999999999999988889999999999999999998876 34455
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
+++++|++|++++|.++ ...+..+..+++|++|++++|.+++.....+..+++|++|++++|.+.+..+..+ ..++
T Consensus 102 ~~l~~L~~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 177 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQ 177 (606)
T ss_dssp SSCTTCCEEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTT
T ss_pred cccccccEeeccccCcc---cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhc
Confidence 55555555555555554 2223334444555555555555443222223334444444444444442212111 2333
Q ss_pred CCc--EEEcccC--------------------------------------------------------------------
Q 037313 228 FLE--ILLLDEN-------------------------------------------------------------------- 237 (362)
Q Consensus 228 ~L~--~L~l~~n-------------------------------------------------------------------- 237 (362)
+|+ +|++++|
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 333 3333333
Q ss_pred -------cccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccc-----------------c
Q 037313 238 -------NFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVN-----------------R 293 (362)
Q Consensus 238 -------~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------~ 293 (362)
.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++... .
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 332222333455566666666666665 555555566666666666665543311 1
Q ss_pred cccccChhhhcCcCCCcEEeccCCcccccC--CccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 294 LSAELPANFYNNIPFLEELYLSKNMFYGDM--PSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
+.+.++...+..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 122344443444566666666666665443 555666666666666666666555566666666666553
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.6e-32 Score=242.09 Aligned_cols=278 Identities=20% Similarity=0.216 Sum_probs=237.9
Q ss_pred CCcceeeeeecCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEcc
Q 037313 55 FVCNWTGITCDVR---------SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFT 125 (362)
Q Consensus 55 ~~c~~~g~~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 125 (362)
..|.|..+.|... ..+++.|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3478888888632 4589999999999997777899999999999999999998889999999999999999
Q ss_pred CCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCccccc--ccCccccCcCC
Q 037313 126 NNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTG--TIPSSIFNLSS 203 (362)
Q Consensus 126 ~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~ 203 (362)
+|.++. +|..+. ++|++|++++|.++ ...+..+..+++|++|++++|.++. ..+..+..+ +
T Consensus 111 ~n~l~~-----------l~~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLVE-----------IPPNLP--SSLVELRIHDNRIR---KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp SSCCCS-----------CCSSCC--TTCCEEECCSSCCC---CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred CCcCCc-----------cCcccc--ccCCEEECCCCccC---ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 999874 555555 79999999999987 4445567889999999999999863 567777777 9
Q ss_pred CcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCc
Q 037313 204 LSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLS 283 (362)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (362)
|++|++++|.++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 174 L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 174 LNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred cCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 999999999998 5776543 789999999999988888889999999999999999998777889999999999999
Q ss_pred CCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccC------CCCCceEEecccccc--cccccccccCC
Q 037313 284 QNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLAN------CSYFRILILGFNDFS--GAIPKEIGNMT 355 (362)
Q Consensus 284 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~ 355 (362)
+|.++ .+|..+. .+++|+.|++++|++++..+..|.. .++|+.+++++|++. +..|..|..++
T Consensus 250 ~N~l~--------~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 250 NNKLS--------RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp SSCCC--------BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCcCe--------ecChhhh-cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 99987 5676654 4599999999999998766666654 467999999999887 56778899999
Q ss_pred CCCeeeC
Q 037313 356 KLENLDL 362 (362)
Q Consensus 356 ~L~~L~l 362 (362)
+|+.+++
T Consensus 321 ~L~~l~l 327 (332)
T 2ft3_A 321 DRLAIQF 327 (332)
T ss_dssp CSTTEEC
T ss_pred hhhhhhc
Confidence 9999875
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.3e-31 Score=240.37 Aligned_cols=279 Identities=19% Similarity=0.207 Sum_probs=238.1
Q ss_pred CCcceeeeeecCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEcc
Q 037313 55 FVCNWTGITCDVR---------SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFT 125 (362)
Q Consensus 55 ~~c~~~g~~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 125 (362)
..|.|..+.|... ..+++.|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3477888888632 4578999999999997767789999999999999999998889999999999999999
Q ss_pred CCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCccccc--ccCccccCcCC
Q 037313 126 NNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTG--TIPSSIFNLSS 203 (362)
Q Consensus 126 ~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~ 203 (362)
+|.++. +|..+. ++|++|++++|.++ ...+..+..+++|++|++++|.++. ..+..+.++++
T Consensus 109 ~n~l~~-----------l~~~~~--~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 109 KNQLKE-----------LPEKMP--KTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp SSCCSB-----------CCSSCC--TTCCEEECCSSCCC---BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCcCCc-----------cChhhc--ccccEEECCCCccc---ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 999864 555544 78999999999987 5556667889999999999999864 67788899999
Q ss_pred CcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCc
Q 037313 204 LSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLS 283 (362)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (362)
|++|++++|.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 173 L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 173 LSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred cCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 999999999998 677654 3789999999999988888899999999999999999998778889999999999999
Q ss_pred CCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccC------CCCCceEEeccccccc--ccccccccCC
Q 037313 284 QNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLAN------CSYFRILILGFNDFSG--AIPKEIGNMT 355 (362)
Q Consensus 284 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~ 355 (362)
+|.++ .+|..+.. +++|++|++++|++++..+..|.. .+.++.+++++|.+.. ..|..|..+.
T Consensus 249 ~N~l~--------~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 249 NNKLV--------KVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp SSCCS--------SCCTTTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCcCc--------cCChhhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 99987 56665544 599999999999998766666653 3788999999998863 5667888889
Q ss_pred CCCeeeC
Q 037313 356 KLENLDL 362 (362)
Q Consensus 356 ~L~~L~l 362 (362)
+++.+++
T Consensus 320 ~l~~l~L 326 (330)
T 1xku_A 320 VRAAVQL 326 (330)
T ss_dssp CGGGEEC
T ss_pred ceeEEEe
Confidence 9988875
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=258.35 Aligned_cols=266 Identities=16% Similarity=0.102 Sum_probs=198.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 5688999999999987778889999999999999998886555667889999999999998876533221
Q ss_pred ----cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCc
Q 037313 138 ----FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNN 213 (362)
Q Consensus 138 ----~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 213 (362)
......+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS---SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc---ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 000112334455555555555555554 3333334556666666666666666555566677777777777776
Q ss_pred CcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccc
Q 037313 214 LKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNR 293 (362)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (362)
..+.++...+ ...+|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 212 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 286 (477)
T 2id5_A 212 YLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV---- 286 (477)
T ss_dssp TCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE----
T ss_pred cccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce----
Confidence 6666666555 44578888888888865444568899999999999999998888889999999999999999873
Q ss_pred cccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 294 LSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
++...+..+++|+.|++++|++++..+..|..+++|+.|++++|++..
T Consensus 287 ----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 287 ----VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ----ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ----ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 333444556999999999999997777788999999999999999874
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-33 Score=269.58 Aligned_cols=287 Identities=17% Similarity=0.198 Sum_probs=214.0
Q ss_pred CCcEEEEEcCCCCCccc-----------------CCccCC--CCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCC
Q 037313 68 SQRVTALNISGLNLTGT-----------------IPSELG--DLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNT 128 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 128 (362)
..++++|++++|.+++. +|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56899999999999985 999999 99999999999999999999999999999999999998
Q ss_pred -Ccc-cCCcccc-------------------ccccCCc--ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEec
Q 037313 129 -LFA-ELPPIFF-------------------FYLKVPP--TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMA 185 (362)
Q Consensus 129 -~~~-~~p~~~~-------------------~~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 185 (362)
+++ .+|..+. ....+|. .++++++|++|++++|.++ +.++ .+..+++|++|++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~---g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---GKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE---EECC-CCEEEEEESEEEC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc---cchh-hhCCCCCCCEEEC
Confidence 887 6664321 1126787 8899999999999999887 6677 7778888888888
Q ss_pred CCcccccccCccccCcCC-CcEEEeecCcCcccCchHHhh-CCCCCcEEEcccCcccccCCcccc-------CCCCCCeE
Q 037313 186 KNNFLTGTIPSSIFNLSS-LSNLDLSYNNLKGELPANICN-NLPFLEILLLDENNFGRRIPSTLS-------RCKHLQTL 256 (362)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~-------~l~~L~~L 256 (362)
++|.++ .+|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|.+++..|..+. .+++|++|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 888888 77888888888 889999888888 77765431 134788888888888777777776 66778888
Q ss_pred EccccccccccCc-cccCCCCCCEEeCcCCcccCcccccc-----------------------cccChhhh-cCcCCCcE
Q 037313 257 SLSVNGFSGAIPK-EIGNLTKLKSLYLSQNSLQGIVNRLS-----------------------AELPANFY-NNIPFLEE 311 (362)
Q Consensus 257 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~~~~~~-~~~~~L~~ 311 (362)
++++|.++ .+|. .+..+++|+.|++++|.++....... ..+|..++ ..+++|+.
T Consensus 439 ~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 439 NLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp ECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred ECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence 88888777 4443 34456777777777776653211110 03444443 24466677
Q ss_pred EeccCCcccccCCccccCCCCCceEEe------cccccccccccccccCCCCCeeeC
Q 037313 312 LYLSKNMFYGDMPSDLANCSYFRILIL------GFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 312 L~L~~n~i~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.++++|+.|++
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 7777776665 6666666677777766 345566666667777777776664
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-32 Score=262.58 Aligned_cols=280 Identities=18% Similarity=0.176 Sum_probs=192.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc------------
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF------------ 137 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~------------ 137 (362)
+++.|++++|.+++..+..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 6777777777777655666777777777777777776 677777777777777777777765433221
Q ss_pred --cccccCCc-ccCCCCCCCCCCCCCccccccCCcc--cccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecC
Q 037313 138 --FFYLKVPP-TVGALPRIPCPPQDTLWLRQKKKAI--KLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYN 212 (362)
Q Consensus 138 --~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 212 (362)
.....+|. .+..+++|++|++++|.+. +.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIE---TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCC---EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccc---cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 00112333 3666777777777777665 222 445666777777777777777666777777777777777777
Q ss_pred cCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccc---cCccccCCCCCCEEeCcCCcccC
Q 037313 213 NLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGA---IPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
.+.+..+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~- 489 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS- 489 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-
Confidence 776555544444677777777777777666677777777777777777777652 2245667777777777777765
Q ss_pred cccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 290 IVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.++...+..+++|++|++++|++++..|..+..+++| .|++++|++++..|..+..+++|+.|++
T Consensus 490 -------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 490 -------SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred -------ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 2333333445778888888888877777778888888 7888888888777777777777877764
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=6.8e-31 Score=245.98 Aligned_cols=265 Identities=20% Similarity=0.163 Sum_probs=179.2
Q ss_pred EEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCC
Q 037313 74 LNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRI 153 (362)
Q Consensus 74 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L 153 (362)
++.++++++ .+|. +. ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++ +..+.++++|
T Consensus 15 ~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~---------~~~~~~l~~L 81 (455)
T 3v47_A 15 AICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR---------NNTFRGLSSL 81 (455)
T ss_dssp EECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC---------TTTTTTCTTC
T ss_pred cCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC---------cccccccccC
Confidence 344555565 5666 32 789999999999998889999999999999999999876532 2345556666
Q ss_pred CCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCcc--ccCcCCCcEEEeecCcCcccCchHHhhCCCCCcE
Q 037313 154 PCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSS--IFNLSSLSNLDLSYNNLKGELPANICNNLPFLEI 231 (362)
Q Consensus 154 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 231 (362)
++|++++|.++ +..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|..++..+++|++
T Consensus 82 ~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 82 IILKLDYNQFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp CEEECTTCTTC---EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred CEEeCCCCccC---ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 66666666554 334444555555555555555555433332 5555555555555555554334433335555555
Q ss_pred EEcccCcccccCCccccC--------------------------------------------------------------
Q 037313 232 LLLDENNFGRRIPSTLSR-------------------------------------------------------------- 249 (362)
Q Consensus 232 L~l~~n~~~~~~~~~l~~-------------------------------------------------------------- 249 (362)
|++++|.+++..+..+..
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 555555554433332221
Q ss_pred -----------------------------------CCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccccc
Q 037313 250 -----------------------------------CKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRL 294 (362)
Q Consensus 250 -----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 294 (362)
.++|++|++++|.+++..|..++.+++|+.|++++|.++
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------ 312 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN------ 312 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc------
Confidence 135666666666666666777777888888888888776
Q ss_pred ccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 295 SAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++
T Consensus 313 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 313 --KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp --EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred --ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 333334445688999999999988777888889999999999999998877888999999998875
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2e-31 Score=257.62 Aligned_cols=286 Identities=18% Similarity=0.150 Sum_probs=182.3
Q ss_pred CCCCCCCCCcc----eeeeeecCC----------------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccc
Q 037313 48 RNWDTSSFVCN----WTGITCDVR----------------SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSG 107 (362)
Q Consensus 48 ~~w~~~~~~c~----~~g~~c~~~----------------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 107 (362)
.+|..+.+||. |..+.|+.. ..+++.++++++.+....+..+.++++|++|++++|.+++
T Consensus 10 ~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~ 89 (597)
T 3oja_B 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89 (597)
T ss_dssp -CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE
T ss_pred cCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC
Confidence 77877666664 555444310 2456677777777764444456677777777777777776
Q ss_pred cCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCC
Q 037313 108 SIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKN 187 (362)
Q Consensus 108 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 187 (362)
..|..++.+++|++|++++|.+++. .|..++++++|++|++++|.++ ...+..+..+++|++|++++
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIRYL----------PPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCC----------CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS
T ss_pred CChHHhcCCCCCCEEECCCCcCCCC----------CHHHHcCCCCCCEEEeeCCCCC---CCCHHHhccCCCCCEEEeeC
Confidence 6666777777777777777777664 3445667777777777777665 33333346667777777777
Q ss_pred cccccccCccccCcCCCcEEEeecCcCcccCchHHhh-------------------------------------CCCCCc
Q 037313 188 NFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICN-------------------------------------NLPFLE 230 (362)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------~l~~L~ 230 (362)
|.+++..+..+..+++|++|++++|.+.+ ++...+. ..++|+
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 77776666667777777777777776663 2211110 112344
Q ss_pred EEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCc
Q 037313 231 ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLE 310 (362)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 310 (362)
+|++++|.+++ +..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++ +|... ..+++|+
T Consensus 236 ~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~-~~l~~L~ 304 (597)
T 3oja_B 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--------LNLYG-QPIPTLK 304 (597)
T ss_dssp EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--------EECSS-SCCTTCC
T ss_pred EEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--------CCccc-ccCCCCc
Confidence 45555554433 3456667777777777777777777777777777777777777653 22222 2346777
Q ss_pred EEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 311 ELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 311 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.|++++|.++ .+|..+..+++|++|++++|.+++. + +..+++|+.|++
T Consensus 305 ~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred EEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 7777777776 5666677777777777777777643 2 456667776654
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.4e-30 Score=250.90 Aligned_cols=124 Identities=15% Similarity=0.054 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4577888888888876666678888888888888888877667777788888888888887776544332
Q ss_pred ---cccccC-CcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccc
Q 037313 138 ---FFYLKV-PPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGT 193 (362)
Q Consensus 138 ---~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 193 (362)
.....+ +..++++++|++|++++|.+.. ..+|..+..+++|++|++++|.+++.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC--CCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccc--eechHhHhhcCCCCEEEccCCcceec
Confidence 000112 2456677777777777776651 24566777788888888877766544
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.4e-31 Score=243.09 Aligned_cols=265 Identities=19% Similarity=0.153 Sum_probs=165.5
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+++.++++++.++...+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++. .|..++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----------PPHVFQ 114 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----------CTTTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC----------CHHHhc
Confidence 4567777777776633333456777777777777777766666777777777777777777653 344566
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhh----
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICN---- 224 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---- 224 (362)
++++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++.....
T Consensus 115 ~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~ 190 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFH 190 (390)
T ss_dssp TCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSE
T ss_pred CCCCCCEEECCCCccC---cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccce
Confidence 6666777777766664 2222224556666777777666666555566666666666666666652 2211100
Q ss_pred ---------------------------------CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccc
Q 037313 225 ---------------------------------NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEI 271 (362)
Q Consensus 225 ---------------------------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 271 (362)
..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 112344555555554332 345667777777777777776667777
Q ss_pred cCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccccccccc
Q 037313 272 GNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEI 351 (362)
Q Consensus 272 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 351 (362)
..+++|+.|++++|.+++ ++... ..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. + +
T Consensus 269 ~~l~~L~~L~L~~n~l~~--------~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~ 335 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA--------LNLYG-QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--L 335 (390)
T ss_dssp TTCSSCCEEECCSSCCCE--------EECSS-SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--C
T ss_pred cccccCCEEECCCCcCcc--------cCccc-CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--c
Confidence 777777777777777653 22222 23467777777777776 5566666777777777777777643 2 5
Q ss_pred ccCCCCCeeeC
Q 037313 352 GNMTKLENLDL 362 (362)
Q Consensus 352 ~~l~~L~~L~l 362 (362)
..+++|+.|++
T Consensus 336 ~~~~~L~~L~l 346 (390)
T 3o6n_A 336 STHHTLKNLTL 346 (390)
T ss_dssp CTTCCCSEEEC
T ss_pred hhhccCCEEEc
Confidence 56677777664
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=264.11 Aligned_cols=282 Identities=20% Similarity=0.165 Sum_probs=207.9
Q ss_pred cceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccC-CccccCCCCCcEEEccCCCCcccCCc
Q 037313 57 CNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSI-PASIYNMSSLLSINFTNNTLFAELPP 135 (362)
Q Consensus 57 c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~ 135 (362)
|+|..|.+ .+.++++|++++|.+++..|..+.++++|++|++++|...+.+ |..+.++++|++|++++|.+.+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~--- 88 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL--- 88 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE---
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc---
Confidence 45666665 3689999999999999888889999999999999999776666 78899999999999999999875
Q ss_pred cccccccCCcccCCCCCCCCCCCCCccccccCCccccc--ccccCCCcEEecCCcccccccC-ccccCcCCCcEEEeecC
Q 037313 136 IFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLR--RFFWHEKKRVMAKNNFLTGTIP-SSIFNLSSLSNLDLSYN 212 (362)
Q Consensus 136 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n 212 (362)
.|..+.++++|++|++++|.+. +..+.. +..+++|++|++++|.+++..+ ..+.++++|++|++++|
T Consensus 89 -------~p~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 89 -------HPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp -------CTTSSCSCSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred -------CHhHccCCcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 5778888999999999998886 444433 6788889999999988876644 56888888999999888
Q ss_pred cCcccCchHHhhCC--CC------------------------------CcEEEcccCcccccCCccccC-----------
Q 037313 213 NLKGELPANICNNL--PF------------------------------LEILLLDENNFGRRIPSTLSR----------- 249 (362)
Q Consensus 213 ~l~~~~~~~~~~~l--~~------------------------------L~~L~l~~n~~~~~~~~~l~~----------- 249 (362)
.+.+..+..+. .+ ++ |++|++++|.+++..+..+..
T Consensus 159 ~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 88755554432 22 34 455555555443322221110
Q ss_pred ---------------------------CCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhh
Q 037313 250 ---------------------------CKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANF 302 (362)
Q Consensus 250 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 302 (362)
.++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++...
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~ 309 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN--------KIADEA 309 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC--------EECTTT
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC--------CCChHH
Confidence 145666666666666666666667777777777777665 333334
Q ss_pred hcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 303 YNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 303 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
+..+++|+.|++++|++++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 445578888888888887777778888888888888888887666667888888888764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=251.80 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=91.6
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEcccccccc--ccCccccCCCCCCEEeCcCCcccC-ccc---------
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSG--AIPKEIGNLTKLKSLYLSQNSLQG-IVN--------- 292 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-~~~--------- 292 (362)
.+++|++|++++|++++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++ ...
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 56778888888888877777777788888888888888875 455667777888888888887765 211
Q ss_pred --------ccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccc-cccCCCCCeeeC
Q 037313 293 --------RLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKE-IGNMTKLENLDL 362 (362)
Q Consensus 293 --------~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 362 (362)
.+.+.+|..+ .++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 1111222211 146777777777776 66766667788888888888887 45554 777778877764
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.2e-30 Score=252.88 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++++|.+++..|..+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 3456666666666665555566666666666666666665556666666666666666666554332221
Q ss_pred ----cc-cccCCcccCCCCCCCCCCCCCcccc
Q 037313 138 ----FF-YLKVPPTVGALPRIPCPPQDTLWLR 164 (362)
Q Consensus 138 ----~~-~~~~~~~~~~l~~L~~l~l~~~~~~ 164 (362)
.. ...+|..++++++|++|++++|.++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 00 1135667777777777777776554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.2e-30 Score=250.57 Aligned_cols=282 Identities=20% Similarity=0.197 Sum_probs=169.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|.++. +|...
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~l~~L~~L~Ls 129 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCCPMASLRHLDLS 129 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSCCCTTCSEEECC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCccccccCCEEECC
Confidence 3678888888888886666788888888888888888887778888888888888888888763 33210
Q ss_pred -cc--cccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCC--cEEecCCccc--ccccCccccCcC--------
Q 037313 138 -FF--YLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEK--KRVMAKNNFL--TGTIPSSIFNLS-------- 202 (362)
Q Consensus 138 -~~--~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~l~~l~-------- 202 (362)
+. ...+|..++++++|++|++++|.+.. ..+..++.| ++|++++|.+ ++..+..+..+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc------CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 00 01123445555555555555554431 011111222 3333333333 222222222111
Q ss_pred -------------------------------------------------------------------------CCcEEEe
Q 037313 203 -------------------------------------------------------------------------SLSNLDL 209 (362)
Q Consensus 203 -------------------------------------------------------------------------~L~~L~l 209 (362)
+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 4444555
Q ss_pred ecCcCcccCchHHh----------------------------------------------------hCCCCCcEEEcccC
Q 037313 210 SYNNLKGELPANIC----------------------------------------------------NNLPFLEILLLDEN 237 (362)
Q Consensus 210 ~~n~l~~~~~~~~~----------------------------------------------------~~l~~L~~L~l~~n 237 (362)
++|.+.|.+|..++ ..+++|++|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 55554444443220 24566777777777
Q ss_pred cccccCCccccCCCCCCeEEcccccccc--ccCccccCCCCCCEEeCcCCcccC-ccc-----------------ccccc
Q 037313 238 NFGRRIPSTLSRCKHLQTLSLSVNGFSG--AIPKEIGNLTKLKSLYLSQNSLQG-IVN-----------------RLSAE 297 (362)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-~~~-----------------~~~~~ 297 (362)
.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++ ... .+.+.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 7766666666777777777777777764 234456666777777777776654 111 01112
Q ss_pred cChhhhcCc-CCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccc-cccCCCCCeeeC
Q 037313 298 LPANFYNNI-PFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKE-IGNMTKLENLDL 362 (362)
Q Consensus 298 ~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 362 (362)
++ ..+ ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++
T Consensus 444 ~~----~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 444 VF----RCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp GG----SSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred hh----hhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 22 222 46788888888776 66666668888888888888888 45555 788888888765
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=6.8e-30 Score=250.91 Aligned_cols=273 Identities=19% Similarity=0.176 Sum_probs=173.9
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCc-c
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPP-T 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~-~ 146 (362)
+.++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++ +|. .
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------l~~~~ 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-----------LSDKT 92 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-----------CCTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-----------cChhh
Confidence 4689999999999986666678999999999999999988888888899999999999998875 444 4
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHh-hC
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANIC-NN 225 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~ 225 (362)
++++++|++|++++|.+. +..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. ..
T Consensus 93 ~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTCTTCSEEECCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hccCCCCCEEECCCCccC---ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 777888888888888775 44445667777888888888877777777777777888888877777643333221 13
Q ss_pred CCCCcEEEcccCcccccCCccc---------------------------------------------------cCCC--C
Q 037313 226 LPFLEILLLDENNFGRRIPSTL---------------------------------------------------SRCK--H 252 (362)
Q Consensus 226 l~~L~~L~l~~n~~~~~~~~~l---------------------------------------------------~~l~--~ 252 (362)
.++|++|++++|.+++..|..+ ..++ +
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 4667777777666655444333 2222 2
Q ss_pred CCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc-----cCCc--
Q 037313 253 LQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG-----DMPS-- 325 (362)
Q Consensus 253 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-----~~~~-- 325 (362)
|++|++++|.+++..+..++.+++|+.|++++|.+++. +...+..+++|+.|++++|...+ .+|.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL--------FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE--------CTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc--------ChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 55555555555544445555555555555555554421 11111222334444443332211 1111
Q ss_pred --cccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 326 --DLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 326 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.|..+++|++|++++|.+++..+..|.++++|+.|++
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 3445556666666666666555556666666666553
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.9e-31 Score=261.00 Aligned_cols=285 Identities=18% Similarity=0.234 Sum_probs=199.5
Q ss_pred CCcEEEEEcCCCCCcc-----------------cCCccCC--CCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCC
Q 037313 68 SQRVTALNISGLNLTG-----------------TIPSELG--DLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNT 128 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 128 (362)
..+++.|++++|.+++ .+|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5689999999999998 4899888 99999999999999999999999999999999999998
Q ss_pred -Ccc-cCCccc--------------------cccccCCc--ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEe
Q 037313 129 -LFA-ELPPIF--------------------FFYLKVPP--TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVM 184 (362)
Q Consensus 129 -~~~-~~p~~~--------------------~~~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 184 (362)
+++ .+|..+ +....+|. .++++++|+.|++++|.++ .+| .+..+++|+.|+
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~----~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR----HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC----BCC-CCCTTSEESEEE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc----cch-hhcCCCcceEEE
Confidence 887 666432 11125777 7888888888888888775 344 677788888888
Q ss_pred cCCcccccccCccccCcCC-CcEEEeecCcCcccCchHHhhCC--CCCcEEEcccCcccccCCccc---c--CCCCCCeE
Q 037313 185 AKNNFLTGTIPSSIFNLSS-LSNLDLSYNNLKGELPANICNNL--PFLEILLLDENNFGRRIPSTL---S--RCKHLQTL 256 (362)
Q Consensus 185 l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l---~--~l~~L~~L 256 (362)
+++|.++ .+|..+..+++ |++|++++|.+. .+|..+. .. ++|++|++++|++++.+|... . .+++|++|
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 8888888 77877888888 888888888887 7775443 33 348888888888876554321 1 23466677
Q ss_pred EccccccccccCccc-cCCCCCCEEeCcCCcccCcccccc-----------------------cccChhhh-cCcCCCcE
Q 037313 257 SLSVNGFSGAIPKEI-GNLTKLKSLYLSQNSLQGIVNRLS-----------------------AELPANFY-NNIPFLEE 311 (362)
Q Consensus 257 ~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~~~~~~-~~~~~L~~ 311 (362)
++++|.++ .+|..+ ..+++|+.|++++|.++....... ..+|..+. ..+++|+.
T Consensus 679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757 (876)
T ss_dssp ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred EccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence 77777666 444443 356666666666666552211100 03444433 23466666
Q ss_pred EeccCCcccccCCccccCCCCCceEEecc------cccccccccccccCCCCCeeeC
Q 037313 312 LYLSKNMFYGDMPSDLANCSYFRILILGF------NDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 312 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l 362 (362)
|++++|++++ +|..+..+++|+.|++++ |.+.+.+|..+.++++|+.|+|
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 6666666664 566666666666666654 5555566666666666666654
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.9e-30 Score=226.71 Aligned_cols=243 Identities=23% Similarity=0.296 Sum_probs=120.1
Q ss_pred CCcceeeeeecCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccc--cCCccccCCCCCcEEE
Q 037313 55 FVCNWTGITCDVR---------SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSG--SIPASIYNMSSLLSIN 123 (362)
Q Consensus 55 ~~c~~~g~~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~ 123 (362)
..|.|.++.|... ..++++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3478888888642 2355566666665552222234556666666666655542 2244444555666666
Q ss_pred ccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccC-ccccCcC
Q 037313 124 FTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIP-SSIFNLS 202 (362)
Q Consensus 124 l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~ 202 (362)
+++|.++. +|..+..+++| ++|++++|.+++..+ ..+..++
T Consensus 85 Ls~n~i~~-----------l~~~~~~l~~L---------------------------~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 85 LSFNGVIT-----------MSSNFLGLEQL---------------------------EHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp CCSCSEEE-----------EEEEEETCTTC---------------------------CEEECTTSEEESSTTTTTTTTCT
T ss_pred CCCCcccc-----------ChhhcCCCCCC---------------------------CEEECCCCcccccccchhhhhcc
Confidence 66555532 33344444444 455555444443322 3344455
Q ss_pred CCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccc-cCCccccCCCCCCeEEccccccccccCccccCCCCCCEEe
Q 037313 203 SLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGR-RIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLY 281 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (362)
+|++|++++|.+.+..+..+ ..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 55555555555442222222 244555555555555443 3444455555555555555555544444555555555555
Q ss_pred CcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCC-CCceEEecccccc
Q 037313 282 LSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCS-YFRILILGFNDFS 344 (362)
Q Consensus 282 L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~ 344 (362)
+++|.++ .++...+..+++|+.|++++|++++..|..+..++ +|++|++++|.++
T Consensus 206 L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 206 MSHNNFF--------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCS--------BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCccC--------ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5555544 22222223334555555555555544455555442 5555555555554
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.4e-31 Score=251.94 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..++++|++++|.+++..|..+.++++|++|++++|++++..|..+.++++|++|++++|.+++. .|..+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL----------SSSWF 94 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC----------CHHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc----------CHHHh
Confidence 35799999999999988888899999999999999999988888899999999999999998774 23346
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccC-ccccCcCCCcEEEeecCcCcccC--------
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIP-SSIFNLSSLSNLDLSYNNLKGEL-------- 218 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~-------- 218 (362)
+++++|++|++++|.++. ...+..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|.+.+..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp TTCTTCCEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred ccCCCCcEEECCCCcccc--cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 667777777777776652 1233445555666666666655322332 34555555555555555555433
Q ss_pred ---------------chHHhhCCCCCcEEEcccCcccc
Q 037313 219 ---------------PANICNNLPFLEILLLDENNFGR 241 (362)
Q Consensus 219 ---------------~~~~~~~l~~L~~L~l~~n~~~~ 241 (362)
+......+++|++|++++|++++
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 33333456778888888877755
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.2e-29 Score=246.11 Aligned_cols=290 Identities=19% Similarity=0.184 Sum_probs=157.2
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccC-----Ccc----c----
Q 037313 71 VTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAEL-----PPI----F---- 137 (362)
Q Consensus 71 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-----p~~----~---- 137 (362)
+++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|...+.+ |.. +
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 666666666666555566666666666666666666666656666666666666554333211 100 0
Q ss_pred ----------cccccCCcccCCCCCCCCCCCCCccccccCCcccc-ccc--ccCCCcEEecCCcccccccCccccCcCCC
Q 037313 138 ----------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKL-RRF--FWHEKKRVMAKNNFLTGTIPSSIFNLSSL 204 (362)
Q Consensus 138 ----------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 204 (362)
......+..+..+++|+++++++|.+.. ..++. .+. ..+.|+.|++++|.+++..+..+..+++|
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL--RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC--CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh--hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 0001122334445555555554443210 00000 000 11345555555555655556666666677
Q ss_pred cEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccc--------------------------cCCccccCCCCCCeEEc
Q 037313 205 SNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGR--------------------------RIPSTLSRCKHLQTLSL 258 (362)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------------~~~~~l~~l~~L~~L~l 258 (362)
++|++++|.+.+.++...+..+++|++|++++|++++ ..|..+..+++|++|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 7777777666655554444456666666666665433 34555666677777777
Q ss_pred cccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEe
Q 037313 259 SVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILIL 338 (362)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 338 (362)
++|.+++..+..+..+++|+.|++++|.+++.........+...+..+++|+.|++++|+++...+..|..+++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 77777755556666777777777777766543111000001112334466666666666666333345666666666666
Q ss_pred cccccccccccccccCCCCCeeeC
Q 037313 339 GFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 339 ~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
++|++++..+..|..+++|+.|++
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEEC
Confidence 666666544445566666666654
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-29 Score=223.18 Aligned_cols=262 Identities=21% Similarity=0.269 Sum_probs=218.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++. .|..+..
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----------SPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----------CTTTTTT
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----------CHHHhcC
Confidence 5678999999988 6776554 6899999999999977777899999999999999999874 5788999
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc-cCchHHhhCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG-ELPANICNNLPF 228 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~ 228 (362)
+++|++|++++|.++. ++..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+++
T Consensus 99 l~~L~~L~Ls~n~l~~----l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE----LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CTTCCEEECCSSCCSB----CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCCCCEEECCCCcCCc----cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 9999999999999863 333332 799999999999998777788999999999999999863 133334458999
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++ ++...+..+++
T Consensus 173 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~ 241 (330)
T 1xku_A 173 LSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------VDNGSLANTPH 241 (330)
T ss_dssp CCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------ECTTTGGGSTT
T ss_pred cCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--------eChhhccCCCC
Confidence 9999999999864 555443 899999999999998888999999999999999999873 44434455689
Q ss_pred CcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccC------CCCCeeeC
Q 037313 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNM------TKLENLDL 362 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l 362 (362)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|... +.++.+++
T Consensus 242 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 999999999998 888899999999999999999997666666433 56666653
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7.1e-30 Score=256.06 Aligned_cols=278 Identities=17% Similarity=0.104 Sum_probs=192.6
Q ss_pred CCcEEEEEcCCCCCcccC-CccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCcc--c-------
Q 037313 68 SQRVTALNISGLNLTGTI-PSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPI--F------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--~------- 137 (362)
..+++.|++++|...+.+ |..+.++++|++|+|++|.+.+..|..+.++++|++|++++|.+++.+|.. +
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 456777777777555455 556777777777777777777667777777777777777777776643221 0
Q ss_pred ------c-c-cccCCcccCCCCCCCCCCCCCccccccCCccccccccc--CCCcEEecCCcccccccCccccCcCC----
Q 037313 138 ------F-F-YLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFW--HEKKRVMAKNNFLTGTIPSSIFNLSS---- 203 (362)
Q Consensus 138 ------~-~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~l~~---- 203 (362)
+ . ....+..++++++|++|++++|.++ +..+..+..+ ++|+.|++++|.+.+..+..+..+++
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~---~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF---LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC---CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCC---eeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 0 0 0001123444445555555444443 2233333333 45555555555555545554444444
Q ss_pred --CcEEEeecCcCcccCchHHhhC-------------------------------------CCCCcEEEcccCcccccCC
Q 037313 204 --LSNLDLSYNNLKGELPANICNN-------------------------------------LPFLEILLLDENNFGRRIP 244 (362)
Q Consensus 204 --L~~L~l~~n~l~~~~~~~~~~~-------------------------------------l~~L~~L~l~~n~~~~~~~ 244 (362)
|++|++++|.+.+.++..+... .++|++|++++|.+++..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 8888888887665544333211 2679999999999988888
Q ss_pred ccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCC
Q 037313 245 STLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMP 324 (362)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 324 (362)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++.+..+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--------LYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--------CCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--------cCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 999999999999999999998888999999999999999999863 333344556899999999999987777
Q ss_pred ccccCCCCCceEEecccccccccccccccCCCCCeee
Q 037313 325 SDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 325 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
..|..+++|++|++++|.+++ ++ .+++|+.|+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~ 387 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIF 387 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEE
T ss_pred hhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhc
Confidence 889999999999999999984 33 255666554
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=232.87 Aligned_cols=261 Identities=15% Similarity=0.126 Sum_probs=191.6
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcc-
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPT- 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~- 146 (362)
..++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++ +|..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~ 119 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-----------LSSSW 119 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-----------CCHHH
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-----------CCHhH
Confidence 3478888888888886555578888888888888888887777788888888888888888865 4444
Q ss_pred cCCCCCCCCCCCCCccccccCCccc-ccccccCCCcEEecCCc-ccccccCccccCcCCCcEEEeecCcCcccCchHHhh
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIK-LRRFFWHEKKRVMAKNN-FLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICN 224 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (362)
+.++++|++|++++|.++ .... ..+..+++|++|++++| .++...+..+.++++|++|++++|.+.+..|..+.
T Consensus 120 ~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~- 195 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK- 195 (353)
T ss_dssp HTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-
T ss_pred hCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-
Confidence 778888888888888875 2222 35667888888888887 46655567788888888888888888855555554
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCcccc---CCCCCCEEeCcCCcccCcccccccccChh
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIG---NLTKLKSLYLSQNSLQGIVNRLSAELPAN 301 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 301 (362)
.+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ....++.++++++.+.+.. ...+|..
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~---l~~l~~~ 272 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES---LFQVMKL 272 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH---HHHHHHH
T ss_pred ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc---hhhhHHH
Confidence 778888888888887543333344578888888888888765444332 3567778888887765321 1134444
Q ss_pred hhcCcCCCcEEeccCCcccccCCcc-ccCCCCCceEEecccccccccc
Q 037313 302 FYNNIPFLEELYLSKNMFYGDMPSD-LANCSYFRILILGFNDFSGAIP 348 (362)
Q Consensus 302 ~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 348 (362)
+ ..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 273 l-~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 L-NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp H-HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred H-hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 3 34588999999999998 55554 5889999999999999886543
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=240.84 Aligned_cols=145 Identities=16% Similarity=0.065 Sum_probs=79.9
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCcccc---------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFF--------- 138 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~--------- 138 (362)
..+++.|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|++++|.+++..|..+.
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34677777777777766666777777777777777777766666677777777777777776654111110
Q ss_pred ----ccccCCc-ccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCC----cEEEe
Q 037313 139 ----FYLKVPP-TVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSL----SNLDL 209 (362)
Q Consensus 139 ----~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l 209 (362)
....++. .++++++|++|++++|.+.. ..+|..+..+++|++|++++|.+++..+..+..+++| +.|++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccce--ecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 0000111 24444555555555554431 1234444455555555555555554444444444444 45555
Q ss_pred ecCcC
Q 037313 210 SYNNL 214 (362)
Q Consensus 210 ~~n~l 214 (362)
++|.+
T Consensus 185 ~~n~l 189 (570)
T 2z63_A 185 SLNPM 189 (570)
T ss_dssp TTCCC
T ss_pred CCCCc
Confidence 54443
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-29 Score=223.87 Aligned_cols=261 Identities=18% Similarity=0.225 Sum_probs=217.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.+++++++++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++. .|..+.+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI----------HEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------CGGGSTT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc----------CHhHhhC
Confidence 5688999999998 7787664 6999999999999977788999999999999999999874 5778999
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc-cCchHHhhCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG-ELPANICNNLPF 228 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~ 228 (362)
+++|++|++++|.++ .++.... ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+.+..+..+ +
T Consensus 101 l~~L~~L~L~~n~l~----~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV----EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp CTTCCEEECCSSCCC----SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred cCCCCEEECCCCcCC----ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 999999999999986 3333333 799999999999997767778999999999999999963 2333333355 8
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++ ++...+..+++
T Consensus 174 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~ 242 (332)
T 2ft3_A 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--------IENGSLSFLPT 242 (332)
T ss_dssp CSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC--------CCTTGGGGCTT
T ss_pred cCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc--------CChhHhhCCCC
Confidence 9999999999965 555543 799999999999998878899999999999999999873 44444455689
Q ss_pred CcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccC------CCCCeeeC
Q 037313 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNM------TKLENLDL 362 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l 362 (362)
|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|... .+|+.|++
T Consensus 243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 999999999998 888899999999999999999997666666543 45666653
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.7e-29 Score=232.65 Aligned_cols=228 Identities=20% Similarity=0.197 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.|++++|++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 137 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV------------------ 137 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB------------------
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc------------------
Confidence 45555555555554445555555555555555555554444555555555555555555543
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
..+..+..+++|++|++++|.++...+..+.++++|++|++++|...+.++...+..+++|
T Consensus 138 -------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 138 -------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp -------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred -------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 2222334455555555555555544444555566666666655433335554444455666
Q ss_pred cEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCC
Q 037313 230 EILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFL 309 (362)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L 309 (362)
++|++++|++++ +| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.++ .++...+..+++|
T Consensus 199 ~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L 268 (452)
T 3zyi_A 199 KYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--------LIERNAFDGLASL 268 (452)
T ss_dssp CEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC--------EECTTTTTTCTTC
T ss_pred CEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc--------eECHHHhcCCCCC
Confidence 666666665543 22 3455566666666666666555555666666666666666554 2222333334556
Q ss_pred cEEeccCCcccccCCccccCCCCCceEEecccccc
Q 037313 310 EELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 310 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
+.|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666666665444455555666666666666543
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.1e-29 Score=231.22 Aligned_cols=228 Identities=20% Similarity=0.209 Sum_probs=115.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
..++.|++++|.+++..+..|.++++|++|+|++|.+++..+..+.++++|++|++++|.++.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----------------- 126 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT----------------- 126 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-----------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-----------------
Confidence 345555555555554444555555555555555555554444555555555555555555543
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
..+..+..+++|++|++++|.++...+..+.++++|++|++++|+..+.++...+..+++
T Consensus 127 --------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 127 --------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp --------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred --------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 222233444555555555555554444445555555555555533333444444445555
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.++ .++...+..+++
T Consensus 187 L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~ 256 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--------VIERNAFDNLQS 256 (440)
T ss_dssp CCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--------EECTTSSTTCTT
T ss_pred cCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee--------EEChhhhcCCCC
Confidence 555555555553 223 2445555555555555555444555555555555555555554 222233333455
Q ss_pred CcEEeccCCcccccCCccccCCCCCceEEeccccc
Q 037313 309 LEELYLSKNMFYGDMPSDLANCSYFRILILGFNDF 343 (362)
Q Consensus 309 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 343 (362)
|+.|+|++|++++..+..|..+++|+.|++++|.+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 55555555555544444455555555555555554
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=237.14 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=69.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++..+..++++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 4567788888887776666677778888888888887776666777777777777777777654322111
Q ss_pred ---c--ccccCCcccCCCCCCCCCCCCCcccc
Q 037313 138 ---F--FYLKVPPTVGALPRIPCPPQDTLWLR 164 (362)
Q Consensus 138 ---~--~~~~~~~~~~~l~~L~~l~l~~~~~~ 164 (362)
+ ....+|..++++++|++|++++|.++
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 0 11236889999999999999998765
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=236.76 Aligned_cols=269 Identities=19% Similarity=0.154 Sum_probs=203.0
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..++++|++++|.+++..|..+.++++|++|++++|++++..|..+.++++|++|++++|.++. +|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------lp~~- 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-----------ISCH- 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-----------EECC-
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-----------cCcc-
Confidence 3689999999999997777789999999999999999998889999999999999999999974 5555
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCC--cEEEeecCcC--cccCchHHh
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSL--SNLDLSYNNL--KGELPANIC 223 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~ 223 (362)
.+++|++|++++|.++. ..+|..+..+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~--~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDA--LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp -CCCCCSEEECCSSCCSS--CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred -ccCCccEEeccCCcccc--ccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 79999999999999872 2567888999999999999999886 456777888 9999999988 444443322
Q ss_pred h-------------------------------------------------------C-----------------------
Q 037313 224 N-------------------------------------------------------N----------------------- 225 (362)
Q Consensus 224 ~-------------------------------------------------------~----------------------- 225 (362)
. .
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 1 0
Q ss_pred ----CCCCcEEEcccCcccccCCccc-----------------------------------------------------c
Q 037313 226 ----LPFLEILLLDENNFGRRIPSTL-----------------------------------------------------S 248 (362)
Q Consensus 226 ----l~~L~~L~l~~n~~~~~~~~~l-----------------------------------------------------~ 248 (362)
.++|++|++++|.+++.+|..+ .
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 2267788888887776666655 4
Q ss_pred CCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCc-cc
Q 037313 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPS-DL 327 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~ 327 (362)
.+++|++|++++|.+++..|..++.+++|+.|++++|.+++. +.+|.. +..+++|++|++++|++++.+|. .+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-----SKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-----HHHHHH-HTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-----ccchHH-HhhCCCCCEEECCCCcCCcccccchh
Confidence 556777777777777766677777777777777777776531 122222 33457788888888877764554 36
Q ss_pred cCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 328 ANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 328 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
..+++|+.|++++|++++..|..+. ++|+.|++
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 6777788888888877766666553 56777664
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.8e-28 Score=237.29 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=83.9
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
+..+++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|++++..+..+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4589999999999996667789999999999999999997777889999999999999999876422221
Q ss_pred ---cccccCC-cccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccc
Q 037313 138 ---FFYLKVP-PTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLT 191 (362)
Q Consensus 138 ---~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 191 (362)
+....+| ..++++++|++|++++|.+.. ...+..+..++.|++|++++|.++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCcccc--CCCchhhccchhhhhhcccCcccc
Confidence 0011122 234555555555555555541 223444555566666666655443
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.6e-29 Score=223.23 Aligned_cols=222 Identities=20% Similarity=0.240 Sum_probs=189.2
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcc
Q 037313 91 DLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAI 170 (362)
Q Consensus 91 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 170 (362)
..+++++|++++|.++ .+|..+.++++|++|++++|.++ . +|.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~----------lp~------------------------- 121 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E----------LPD------------------------- 121 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-C----------CCS-------------------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-c----------hhH-------------------------
Confidence 4578999999999998 88988999999999999999985 3 333
Q ss_pred cccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHh--------hCCCCCcEEEcccCccccc
Q 037313 171 KLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANIC--------NNLPFLEILLLDENNFGRR 242 (362)
Q Consensus 171 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--------~~l~~L~~L~l~~n~~~~~ 242 (362)
.+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+. ..+++|++|++++|+++ .
T Consensus 122 --~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~ 197 (328)
T 4fcg_A 122 --TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197 (328)
T ss_dssp --CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C
T ss_pred --HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c
Confidence 3445566677777777777 6777888888888888888877777776553 24899999999999997 7
Q ss_pred CCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 243 IPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ .+|..+ ..+++|+.|++++|.+.+.
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~-------~~p~~~-~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-------NYPPIF-GGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC-------BCCCCT-TCCCCCCEEECTTCTTCCB
T ss_pred chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh-------hhHHHh-cCCCCCCEEECCCCCchhh
Confidence 8888999999999999999999 577789999999999999998764 455544 3458999999999999999
Q ss_pred CCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 323 MPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 323 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
+|..+..+++|+.|++++|.+.+.+|+.++++++|+.+++
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 9999999999999999999999999999999999998864
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=5.5e-29 Score=239.07 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=123.2
Q ss_pred cccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCch--HHhhCCCCCcEEEcccCcccccCCc-cccCCC
Q 037313 175 FFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPA--NICNNLPFLEILLLDENNFGRRIPS-TLSRCK 251 (362)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~ 251 (362)
..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++. ..+..+++|++|++++|.+++.+|. .+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 45567888888888888777777788888888888888877 3332 2234778888888888888764444 467778
Q ss_pred CCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCcc-ccCC
Q 037313 252 HLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD-LANC 330 (362)
Q Consensus 252 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l 330 (362)
+|++|++++|.+++..|..+. ++|+.|++++|.++ .+|..++ .+++|++|++++|+++ .+|.. +..+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--------~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--------SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--------CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--------ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 888888888888766665543 68888888888876 6787777 5699999999999998 56655 9999
Q ss_pred CCCceEEeccccccccc
Q 037313 331 SYFRILILGFNDFSGAI 347 (362)
Q Consensus 331 ~~L~~L~l~~n~l~~~~ 347 (362)
++|+.|++++|++.+..
T Consensus 497 ~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTCCCEECCSCCBCCCH
T ss_pred CCCCEEEecCCCcCCCc
Confidence 99999999999998643
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.5e-29 Score=240.84 Aligned_cols=255 Identities=21% Similarity=0.179 Sum_probs=170.7
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..++++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++. ..|..+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL---------GVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS---------CSSCSC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc---------chhhhh
Confidence 57899999999999988888999999999999999999977777799999999999999998752 145567
Q ss_pred CCCCCCCCCCCCCccccccCCccc-ccccccCCCcEEecCCcccccccCcccc------------------------CcC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIK-LRRFFWHEKKRVMAKNNFLTGTIPSSIF------------------------NLS 202 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~------------------------~l~ 202 (362)
+++++|++|++++|.+. +.++ ..+..+++|++|++++|.+++..|..+. .++
T Consensus 120 ~~l~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETF---SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp TTCTTCCEEEEEESSSC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred hccCCccEEECCCCccc---cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 77778888888777633 3333 4566677777777777777766555543 367
Q ss_pred CCcEEEeecCcCcccC--chHHhh----------------------------CCC-------------------------
Q 037313 203 SLSNLDLSYNNLKGEL--PANICN----------------------------NLP------------------------- 227 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~--~~~~~~----------------------------~l~------------------------- 227 (362)
+|++|++++|.+.+.. +..+.. .++
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 8888888888877421 101100 112
Q ss_pred ----------------------------------CCcEEEcccCcccccCCccc-cCCCCCCeEEccccccccccCc---
Q 037313 228 ----------------------------------FLEILLLDENNFGRRIPSTL-SRCKHLQTLSLSVNGFSGAIPK--- 269 (362)
Q Consensus 228 ----------------------------------~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~--- 269 (362)
+|++|++++|.++ .+|..+ ..+++|++|++++|.+++.+|.
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 2333333333332 233333 3466777777777777655432
Q ss_pred cccCCCCCCEEeCcCCcccCcccccccccCh--hhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccc
Q 037313 270 EIGNLTKLKSLYLSQNSLQGIVNRLSAELPA--NFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
.++.+++|+.|++++|.+++ ++. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRS--------MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCC--------HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred hhhccccCcEEEccCCcccc--------cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 25566777777777776653 221 22344577777777777776 56666666777777777777665
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.5e-28 Score=216.59 Aligned_cols=243 Identities=21% Similarity=0.261 Sum_probs=201.6
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 72 TALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 72 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
+.++.++++++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 46788888887 6776543 6899999999998844444578899999999999887542
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCch-HHhhCCCCCc
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPA-NICNNLPFLE 230 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~ 230 (362)
+..+..+..+++|++|++++|.++ .++..+..+++|++|++++|.+. .++. ..+..+++|+
T Consensus 68 ----------------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 68 ----------------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 129 (306)
T ss_dssp ----------------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCC
T ss_pred ----------------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCC
Confidence 223344455778888999988887 46777889999999999999998 4443 4455899999
Q ss_pred EEEcccCcccccCCccccCCCCCCeEEcccccccc-ccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCC
Q 037313 231 ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSG-AIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFL 309 (362)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L 309 (362)
+|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.++ .++...+..+++|
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L 201 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSL 201 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--------EECTTTTTTCTTC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC--------CcCHHHhcCCCCC
Confidence 99999999988888889999999999999999986 57889999999999999999987 3433444556899
Q ss_pred cEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCC-CCCeeeC
Q 037313 310 EELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMT-KLENLDL 362 (362)
Q Consensus 310 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 362 (362)
++|++++|++++..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 9999999999977777899999999999999999998999999985 8999875
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.8e-28 Score=217.63 Aligned_cols=265 Identities=18% Similarity=0.276 Sum_probs=189.3
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCcc-------c---
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPI-------F--- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-------~--- 137 (362)
..++++|++++|.+++ ++. +.++++|++|++++|.+++ + +.+.++++|++|++++|.+.+..+.. +
T Consensus 65 ~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECT
T ss_pred cCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECC
Confidence 4678888888888873 444 8888888888888888874 3 35788888888888888876531100 0
Q ss_pred -cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc
Q 037313 138 -FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG 216 (362)
Q Consensus 138 -~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (362)
......+..+..+++|++|++++|.+. ...+ +..+++|++|++++|.+++.. . +..+++|+.|++++|.+.
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~- 212 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVK---DVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQIT- 212 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCC---CCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCC-
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcC---Cchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCC-
Confidence 001112233555666666666666554 1111 556677777777777766432 2 667777777887777776
Q ss_pred cCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccccccc
Q 037313 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSA 296 (362)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (362)
.++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~------- 279 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD------- 279 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-------
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-------
Confidence 3333 3377888888888888765433 77888888888888888743 467788889999998888763
Q ss_pred ccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 297 ELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
++ .+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|+.|++
T Consensus 280 -~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 280 -IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp -CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred -Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 22 23445889999999999988888889999999999999999986555 888999998875
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1e-27 Score=216.40 Aligned_cols=249 Identities=23% Similarity=0.282 Sum_probs=195.9
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc--------cc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF--------FF 139 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~--------~~ 139 (362)
..++++|++++|.+++ + +.+.++++|++|++++|.+++ ++. +.++++|++|++++|.....++... ..
T Consensus 87 l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162 (347)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred CCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence 5789999999999884 3 468899999999999998874 333 7788888888888886555444311 00
Q ss_pred ---cccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc
Q 037313 140 ---YLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG 216 (362)
Q Consensus 140 ---~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (362)
...-...+..+++|++|++++|.+.. ++. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.
T Consensus 163 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~- 234 (347)
T 4fmz_A 163 TESKVKDVTPIANLTDLYSLSLNYNQIED----ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT- 234 (347)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECTTSCCCC----CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-
T ss_pred cCCCcCCchhhccCCCCCEEEccCCcccc----ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-
Confidence 00111227789999999999998862 222 7788999999999999886543 889999999999999998
Q ss_pred cCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccccccc
Q 037313 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSA 296 (362)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (362)
.++. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~------- 301 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN------- 301 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-------
T ss_pred CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-------
Confidence 5555 34899999999999998653 4688999999999999999854 468889999999999998863
Q ss_pred ccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccc
Q 037313 297 ELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
.+...+..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus 302 -~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 -EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 333444556999999999999986655 889999999999999886
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.5e-28 Score=220.86 Aligned_cols=249 Identities=22% Similarity=0.183 Sum_probs=189.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcc-
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPT- 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~- 146 (362)
..++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++. +|..
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------l~~~~ 136 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-----------LPRGI 136 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-----------CCHHH
Confidence 3678899999999887667788999999999999999887777888889999999999998864 4433
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccc----------------------------
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSI---------------------------- 198 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---------------------------- 198 (362)
+.++++|++|++++|.+. +..+..+..+++|++|++++|.+++.....+
T Consensus 137 ~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp TTTCTTCCEEECCSSCCC---BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred hcCCCCCcEEECCCCccC---ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECC
Confidence 356666666666666665 3334445555666666666665543211111
Q ss_pred ---------cCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCc
Q 037313 199 ---------FNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPK 269 (362)
Q Consensus 199 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 269 (362)
...++|++|++++|.+++ . ..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++.
T Consensus 214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~-~-~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 289 (390)
T 3o6n_A 214 HNSINVVRGPVNVELTILKLQHNNLTD-T-AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL 289 (390)
T ss_dssp SSCCCEEECCCCSSCCEEECCSSCCCC-C-GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EEC
T ss_pred CCeeeeccccccccccEEECCCCCCcc-c-HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCc
Confidence 112467777777777773 3 234 488999999999999998889999999999999999999984 566
Q ss_pred cccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccc
Q 037313 270 EIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGA 346 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (362)
.+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|++++. + +..+++|+.|++++|++...
T Consensus 290 ~~~~l~~L~~L~L~~n~l~--------~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL--------HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC--------CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCCCCEEECCCCcce--------ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 6678999999999999987 4555443 358999999999999743 3 77889999999999999863
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.1e-28 Score=213.77 Aligned_cols=255 Identities=19% Similarity=0.171 Sum_probs=166.8
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 72 TALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 72 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
++++.++++++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++. .|..+..++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----------DAAAFTGLA 80 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------CTTTTTTCT
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----------CHhhcCCcc
Confidence 45556666665 445433 34667777777776655555666677777777777666553 355566666
Q ss_pred CCCCCCCCCcc-ccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCc
Q 037313 152 RIPCPPQDTLW-LRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLE 230 (362)
Q Consensus 152 ~L~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (362)
+|++|++++|. +. ...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|+
T Consensus 81 ~L~~L~l~~n~~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 81 LLEQLDLSDNAQLR---SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156 (285)
T ss_dssp TCCEEECCSCTTCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCCEEeCCCCCCcc---ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCcc
Confidence 77777777665 43 333455666777777777777777666777777788888888888777 55554444677788
Q ss_pred EEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCc
Q 037313 231 ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLE 310 (362)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 310 (362)
+|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .++...+..+++|+
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--------ALPTEALAPLRALQ 228 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--------CCCHHHHTTCTTCC
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC--------cCCHHHcccCcccC
Confidence 8888888776666666777788888888888887777777777788888888888776 34555455567788
Q ss_pred EEeccCCcccccCCccccCCCCCceEEecccccccccccccc
Q 037313 311 ELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIG 352 (362)
Q Consensus 311 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 352 (362)
.|++++|.+....+.. .-...++.+....+.+....|+.+.
T Consensus 229 ~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 8888888776433221 0011233444555666656666553
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.8e-31 Score=234.70 Aligned_cols=267 Identities=20% Similarity=0.162 Sum_probs=212.0
Q ss_pred CCCCCCCCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCccc-ccCCcccc-------CCCCC
Q 037313 48 RNWDTSSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFS-GSIPASIY-------NMSSL 119 (362)
Q Consensus 48 ~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~-------~l~~L 119 (362)
..|.....|+.+..+.......+++.+++++|.+ .+|..+... |++|++++|.++ ..+|..+. ++++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 3454444444444433222245788889999999 678766554 899999999994 56777666 79999
Q ss_pred cEEEccCCCCcccCCccccccccCCccc--CCCCCCCCCCCCCccccccCCccccccccc-----CCCcEEecCCccccc
Q 037313 120 LSINFTNNTLFAELPPIFFFYLKVPPTV--GALPRIPCPPQDTLWLRQKKKAIKLRRFFW-----HEKKRVMAKNNFLTG 192 (362)
Q Consensus 120 ~~L~l~~n~~~~~~p~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~ 192 (362)
++|++++|.+++. +|..+ ..+++|++|++++|.++ +. +..+..+ ++|++|++++|.+++
T Consensus 98 ~~L~L~~n~l~~~----------~~~~~~~~~l~~L~~L~Ls~N~l~---~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 98 QELTLENLEVTGT----------APPPLLEATGPDLNILNLRNVSWA---TR-DAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp CEEEEEEEBCBSC----------CCCCSSSCCSCCCSEEEEESCBCS---SS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred cEEEccCCcccch----------hHHHHHHhcCCCccEEEccCCCCc---ch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 9999999999887 66665 88999999999999997 43 5555555 899999999999998
Q ss_pred ccCccccCcCCCcEEEeecCcCcccC--chHH-hhCCCCCcEEEcccCcccc--cCC-ccccCCCCCCeEEccccccccc
Q 037313 193 TIPSSIFNLSSLSNLDLSYNNLKGEL--PANI-CNNLPFLEILLLDENNFGR--RIP-STLSRCKHLQTLSLSVNGFSGA 266 (362)
Q Consensus 193 ~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~-~~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~l~~~ 266 (362)
..+..+.++++|++|++++|.+.+.+ +..+ +..+++|++|++++|++++ ..+ ..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 88899999999999999999987653 3333 2488999999999999873 222 3346789999999999999977
Q ss_pred cC-ccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 267 IP-KEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 267 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
.| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~--------~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK--------QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS--------SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccC--------hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 64 45667899999999999987 5666554 6799999999999865 65 8999999999999999985
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.9e-28 Score=215.21 Aligned_cols=249 Identities=19% Similarity=0.160 Sum_probs=206.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCC-CcccCCccccccccCCcc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNT-LFAELPPIFFFYLKVPPT 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~~~~ 146 (362)
..++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|. +... .|..
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~----------~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV----------DPAT 100 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC----------CTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc----------CHHH
Confidence 5689999999999997777789999999999999999998889999999999999999997 6543 3677
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCC
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNL 226 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (362)
+..+++|++|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+
T Consensus 101 ~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l 176 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176 (285)
T ss_dssp TTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTC
T ss_pred hcCCcCCCEEECCCCcCC---EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCc
Confidence 899999999999999997 555677888999999999999999777777899999999999999998 6666555589
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccCh-hhhcC
Q 037313 227 PFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPA-NFYNN 305 (362)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~~ 305 (362)
++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+... .+. .+.
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-------~~~~~~~-- 247 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-------CRARPLW-- 247 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-------GGGHHHH--
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC-------CCcHHHH--
Confidence 9999999999999988899999999999999999999976667789999999999999988632 111 111
Q ss_pred cCCCcEEeccCCcccccCCccccC--CCCCceEEecc
Q 037313 306 IPFLEELYLSKNMFYGDMPSDLAN--CSYFRILILGF 340 (362)
Q Consensus 306 ~~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~ 340 (362)
..++.+..+.+.+....|..+.+ +..++..++.+
T Consensus 248 -~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 248 -AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp -HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred -HHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence 23555667777777777777654 33344334433
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-27 Score=230.68 Aligned_cols=249 Identities=22% Similarity=0.189 Sum_probs=196.3
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcc-
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPT- 146 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~- 146 (362)
..+++.|++++|.+++..|..++.+++|++|++++|.+++..|..++++++|++|++++|.+++ +|..
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------l~~~~ 142 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-----------LPRGI 142 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----------CCHHH
Confidence 3679999999999997777789999999999999999998778888999999999999999875 4443
Q ss_pred cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccC--------------------------
Q 037313 147 VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFN-------------------------- 200 (362)
Q Consensus 147 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-------------------------- 200 (362)
++++++|++|++++|.+. +..+..+..+++|++|++++|.+++.....+.+
T Consensus 143 ~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTCTTCCEEECCSSCCC---BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred hccCCCCCEEEeeCCcCC---CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 467777777777777765 445555666677777777777665432111111
Q ss_pred -----------cCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCc
Q 037313 201 -----------LSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPK 269 (362)
Q Consensus 201 -----------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 269 (362)
.++|+.|++++|.+++ +..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|.
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~ 295 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD--TAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL 295 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC--CGGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EEC
T ss_pred CCcccccccccCCCCCEEECCCCCCCC--Chhh-ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCc
Confidence 1356677777777764 2334 389999999999999999999999999999999999999995 566
Q ss_pred cccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccc
Q 037313 270 EIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGA 346 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (362)
.+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~--------~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL--------HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC--------CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccccCCCCcEEECCCCCCC--------ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 7778999999999999987 4565553 458999999999999744 3 67889999999999999763
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.8e-27 Score=221.16 Aligned_cols=240 Identities=18% Similarity=0.163 Sum_probs=199.3
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 72 TALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 72 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
..++.++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++.
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------------- 114 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI------------------- 114 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------------
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-------------------
Confidence 34556666666 5676554 5889999999999887888888999999999998887542
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcE
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEI 231 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 231 (362)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 115 ------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 115 ------------------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175 (452)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred ------------------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccE
Confidence 2233456678899999999999777777899999999999999998 777766679999999
Q ss_pred EEcccC-cccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCc
Q 037313 232 LLLDEN-NFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLE 310 (362)
Q Consensus 232 L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 310 (362)
|++++| .+....+..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .++...+..+++|+
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP--------EIRPGSFHGLSSLK 245 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS--------EECGGGGTTCTTCC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc--------ccCcccccCccCCC
Confidence 999995 4544445568899999999999999984 44 5788999999999999987 44445556679999
Q ss_pred EEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 311 ELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 311 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 9999999999888999999999999999999999777778899999999875
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=221.67 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=221.6
Q ss_pred CCCCCCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCC
Q 037313 50 WDTSSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTL 129 (362)
Q Consensus 50 w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 129 (362)
|......|.|.++ | +.++++++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 3444566888765 4 45677777 6777654 5899999999999976667899999999999999999
Q ss_pred cccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccC-ccccCcCCCcEEE
Q 037313 130 FAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIP-SSIFNLSSLSNLD 208 (362)
Q Consensus 130 ~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~ 208 (362)
++. .|..+.++++|++|++++|.++ ...+..+..+++|++|++++|.+++..+ ..+.++++|++|+
T Consensus 89 ~~~----------~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 89 NTI----------EEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp CEE----------CTTTTTTCTTCCEEECCSSCCS---SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred Ccc----------CHhhcCCCCCCCEEECCCCcCC---cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 874 4667899999999999999987 4444447889999999999999985433 4788999999999
Q ss_pred eecCc-CcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcc
Q 037313 209 LSYNN-LKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSL 287 (362)
Q Consensus 209 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (362)
+++|. +. .+++..+..+++|++|++++|.+++..|..+..+++|++|++++|.++......+..+++|+.|++++|.+
T Consensus 156 l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 156 VGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred CCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 99995 55 66555555899999999999999988899999999999999999999744333455689999999999998
Q ss_pred cCcccccccccChhhhcCcCCCcEEeccCCcccc----cCCccccCCCCCceEEecccccccccccc-cccCCCCCeeeC
Q 037313 288 QGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG----DMPSDLANCSYFRILILGFNDFSGAIPKE-IGNMTKLENLDL 362 (362)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 362 (362)
++.... .++ .......++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. ++++++|+.|++
T Consensus 235 ~~~~~~---~l~--~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 235 DTFHFS---ELS--TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp TTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cccccc---ccc--cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 754211 111 11223678899999998875 46788999999999999999999 56665 589999999975
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.8e-29 Score=222.93 Aligned_cols=245 Identities=20% Similarity=0.155 Sum_probs=150.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.++++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++ ++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----------l~---- 96 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----------LL---- 96 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----------EE----
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----------cc----
Confidence 356777777777765555567777777777777777665443 6667777777777776644 11
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
..++|++|++++|.++ +..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+...+++
T Consensus 97 ~~~~L~~L~l~~n~l~---~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 VGPSIETLHAANNNIS---RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ECTTCCEEECCSSCCS---EEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CCCCcCEEECCCCccC---CcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 2266677777777665 2211 124567777777777766555566666777777777777664444444445667
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|.+++. + ....+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+ ..+++
T Consensus 171 L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~--------~l~~~~-~~l~~ 238 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV--------LIEKAL-RFSQN 238 (317)
T ss_dssp CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC--------EECTTC-CCCTT
T ss_pred CCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc--------chhhHh-hcCCC
Confidence 77777777766543 2 2234667777777777776 34444666677777777777665 344433 23366
Q ss_pred CcEEeccCCccc-ccCCccccCCCCCceEEeccc-ccccccc
Q 037313 309 LEELYLSKNMFY-GDMPSDLANCSYFRILILGFN-DFSGAIP 348 (362)
Q Consensus 309 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 348 (362)
|+.|++++|.+. +.++..+..+++|+.++++++ .+.+..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 777777777666 555666666666776666643 4444333
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.3e-27 Score=217.63 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=201.6
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 72 TALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 72 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
..++.++.+++ .+|..+. +++++|+|++|++++..+..+.++++|++|++++|.+.+.
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i------------------- 103 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI------------------- 103 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-------------------
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-------------------
Confidence 34555666676 6777664 6899999999999988888999999999999999988542
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcE
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEI 231 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 231 (362)
.+..+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 104 ------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 104 ------------------EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164 (440)
T ss_dssp ------------------CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred ------------------ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCE
Confidence 1233556788899999999999777778999999999999999998 677666668999999
Q ss_pred EEcccCc-ccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCc
Q 037313 232 LLLDENN-FGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLE 310 (362)
Q Consensus 232 L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 310 (362)
|++++|. +....+..+..+++|++|++++|.++ .+| .+..+++|+.|++++|.++ .++...+..+++|+
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS--------AIRPGSFQGLMHLQ 234 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC--------EECTTTTTTCTTCC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC--------ccChhhhccCccCC
Confidence 9999954 44445557899999999999999998 555 4788999999999999987 44444555679999
Q ss_pred EEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 311 ELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 311 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 9999999999888999999999999999999999777778899999999875
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7.7e-27 Score=219.05 Aligned_cols=263 Identities=23% Similarity=0.260 Sum_probs=158.3
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++. ++ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++..+-.-
T Consensus 67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence 46788888888888743 33 7788888888888887775433 7778888888888777755311000
Q ss_pred -ccc--------------------ccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCc
Q 037313 138 -FFY--------------------LKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPS 196 (362)
Q Consensus 138 -~~~--------------------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 196 (362)
... ......+.++++|++|++++|.+.. + ..+..+++|++|++++|.+++..+
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD----I-SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC----C-hhhccCCCCCEEEecCCccccccc-
Confidence 000 0000113444445555555554431 1 124445555555555555554332
Q ss_pred cccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCC
Q 037313 197 SIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK 276 (362)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 276 (362)
+..+++|++|++++|.+. .++ .+ ..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp -GGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred -ccccCCCCEEECCCCCcc-cch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 445556666666666555 232 22 255666666666666654333 5566667777777776664322 566677
Q ss_pred CCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCC
Q 037313 277 LKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTK 356 (362)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 356 (362)
|+.|++++|.+++. +. +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++
T Consensus 289 L~~L~L~~n~l~~~--------~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 289 LTNLELNENQLEDI--------SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp CSEEECCSSCCSCC--------GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cCeEEcCCCcccCc--------hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 77777777766532 21 3345778888888888776544 67788888888888888753 46778888
Q ss_pred CCeeeC
Q 037313 357 LENLDL 362 (362)
Q Consensus 357 L~~L~l 362 (362)
|+.|++
T Consensus 355 L~~L~l 360 (466)
T 1o6v_A 355 INWLSA 360 (466)
T ss_dssp CCEEEC
T ss_pred CCEEeC
Confidence 888764
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=219.63 Aligned_cols=257 Identities=18% Similarity=0.147 Sum_probs=212.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+++..+++.+.+...+...+..+++|++|++++|++++..|..+.++++|++|++++|.+++. ++ +.
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~-~~ 77 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----------LD-LE 77 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------EE-ET
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------hh-hh
Confidence 4677788888888755555667788999999999999987778999999999999999999763 22 88
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
.+++|++|++++|.++. . ...++|++|++++|.+++..+. .+++|++|++++|.+++ +++..+..+++
T Consensus 78 ~l~~L~~L~Ls~n~l~~---l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-~~~~~~~~l~~ 145 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQE---L-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSR 145 (317)
T ss_dssp TCTTCCEEECCSSEEEE---E-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-GGGBCTGGGSS
T ss_pred hcCCCCEEECcCCcccc---c-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-ccchhhhccCC
Confidence 99999999999999862 1 1338999999999999865443 46889999999999994 54444447899
Q ss_pred CcEEEcccCcccccCCccc-cCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcC
Q 037313 229 LEILLLDENNFGRRIPSTL-SRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIP 307 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 307 (362)
|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|.++ .++..+ ..++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~--------~l~~~~-~~l~ 214 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA--------FMGPEF-QSAA 214 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC--------EECGGG-GGGT
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC--------cchhhh-cccC
Confidence 9999999999988777666 4789999999999999855 3 2335899999999999987 455553 4459
Q ss_pred CCcEEeccCCcccccCCccccCCCCCceEEecccccc-cccccccccCCCCCeee
Q 037313 308 FLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFS-GAIPKEIGNMTKLENLD 361 (362)
Q Consensus 308 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 361 (362)
+|+.|++++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 9999999999998 67888999999999999999998 67888888887776654
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.7e-26 Score=215.46 Aligned_cols=252 Identities=19% Similarity=0.139 Sum_probs=121.2
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc-----------
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF----------- 137 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~----------- 137 (362)
.++++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++++++|++|++++|.+++. |-.-
T Consensus 42 ~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCC
Confidence 345555555555553 23 34555555555555555543 22 44555555555555554431 0000
Q ss_pred cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCccc
Q 037313 138 FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGE 217 (362)
Q Consensus 138 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 217 (362)
+....+| ++.+++|++|++++|.++. + .+..+++|++|++++|...+.+ .+..+++|++|++++|.++ .
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~----l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~ 184 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTE----I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-E 184 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSC----C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-C
T ss_pred CcCCeec--CCCCCcCCEEECCCCccce----e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-e
Confidence 0000021 4445555555555555441 1 1344455555555555333232 3445556666666666665 2
Q ss_pred CchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccc
Q 037313 218 LPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAE 297 (362)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 297 (362)
+| + ..+++|++|++++|++++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++........
T Consensus 185 l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 43 2 2555666666666665443 25556666666666666664 34 555666666666666665321000000
Q ss_pred cChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccccccc
Q 037313 298 LPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPK 349 (362)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 349 (362)
+..-... ..+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 256 L~~L~l~-~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 256 LTTLHCI-QTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCEEECT-TCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCEEecc-CCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 0000000 0134445555555444444 34566777777777766555553
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-26 Score=201.83 Aligned_cols=216 Identities=23% Similarity=0.268 Sum_probs=150.3
Q ss_pred CCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccC
Q 037313 54 SFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAEL 133 (362)
Q Consensus 54 ~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 133 (362)
.+.|.|.|+.|.. ..+++.+++++++++ .+|..+. +++++|++++|++++..+..+.++++|++|++++|.++.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 75 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-- 75 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--
Confidence 4679999999875 456788999999998 6777554 689999999999997767789999999999999999865
Q ss_pred CccccccccCCcc-cCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecC
Q 037313 134 PPIFFFYLKVPPT-VGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYN 212 (362)
Q Consensus 134 p~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 212 (362)
+|.. +..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 76 ---------i~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 76 ---------LPAGIFKELKNLETLWVTDNKLQ---ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp ---------CCTTTTSSCTTCCEEECCSSCCC---CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ---------eChhhhcCCCCCCEEECCCCcCC---cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 3333 466777777777777665 333334455666666777666666555555666666666666666
Q ss_pred cCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 213 NLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 144 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 666 455444445666666666666665555555666666666666666666444445556666666666666543
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.9e-26 Score=215.16 Aligned_cols=262 Identities=21% Similarity=0.277 Sum_probs=206.0
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCc------------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPP------------ 135 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~------------ 135 (362)
..++++|++++|.+++.. + +.++++|++|++++|.+++. +. +.++++|++|++++|.+.+. |.
T Consensus 89 l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeec
Confidence 467888899888887443 3 88888888888888887753 32 67777777777777765431 11
Q ss_pred --------cc------------cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccC
Q 037313 136 --------IF------------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIP 195 (362)
Q Consensus 136 --------~~------------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 195 (362)
.+ .....-...+..+++|++|++++|.+. +..+ +..+++|++|++++|.+++.
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS---DITP--LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---CCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc---cccc--ccccCCCCEEECCCCCcccc--
Confidence 00 000111234788999999999999887 3333 66789999999999998853
Q ss_pred ccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCC
Q 037313 196 SSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLT 275 (362)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 275 (362)
..+..+++|++|++++|.+.+ +++ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 468899999999999999984 443 3489999999999999976544 7889999999999999986443 78899
Q ss_pred CCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCC
Q 037313 276 KLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMT 355 (362)
Q Consensus 276 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 355 (362)
+|+.|++++|.+++. +. ...+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..++
T Consensus 310 ~L~~L~L~~n~l~~~--------~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 375 (466)
T 1o6v_A 310 NLTYLTLYFNNISDI--------SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT 375 (466)
T ss_dssp TCSEEECCSSCCSCC--------GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred CCCEEECcCCcCCCc--------hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence 999999999998753 11 34568999999999999864 578899999999999999998766 88999
Q ss_pred CCCeeeC
Q 037313 356 KLENLDL 362 (362)
Q Consensus 356 ~L~~L~l 362 (362)
+|+.|++
T Consensus 376 ~L~~L~l 382 (466)
T 1o6v_A 376 RITQLGL 382 (466)
T ss_dssp TCCEEEC
T ss_pred CCCEEec
Confidence 9999875
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=6.8e-26 Score=211.45 Aligned_cols=262 Identities=19% Similarity=0.135 Sum_probs=190.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---------- 137 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---------- 137 (362)
..++++|++++|.+++ +| ++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +|...
T Consensus 63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECC
Confidence 4567777777777764 33 66667777777777766642 2 5666666666666666654 22100
Q ss_pred -cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc
Q 037313 138 -FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG 216 (362)
Q Consensus 138 -~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (362)
+....+ .++.+++|++|++++|... +.+ .+..+++|++|++++|.+++ ++ +..+++|+.|++++|.+++
T Consensus 136 ~N~l~~l--~l~~l~~L~~L~l~~n~~~---~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 136 RNTLTEI--DVSHNTQLTELDCHLNKKI---TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp TSCCSCC--CCTTCTTCCEEECTTCSCC---CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCcccee--ccccCCcCCEEECCCCCcc---ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 000112 3788999999999999544 333 46778999999999999987 44 8899999999999999984
Q ss_pred cCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcc---cc
Q 037313 217 ELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIV---NR 293 (362)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~ 293 (362)
++ + ..+++|++|++++|++++ +| +..+++|++|++++|.+++..+ +.+++|+.|++++|.++... +.
T Consensus 206 -~~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 206 -LD--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp -CC--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred -ec--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCc
Confidence 43 3 478999999999999977 55 7889999999999999996543 45666776666666654431 22
Q ss_pred cccccChhhhcCcCCCcEEeccCCcccccCCc--------cccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 294 LSAELPANFYNNIPFLEELYLSKNMFYGDMPS--------DLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
..+.+|. ..+++|+.|++++|...+.+|. .+..+++|+.|++++|++++ ++ ++++++|+.|++
T Consensus 276 ~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 276 QLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSC 346 (457)
T ss_dssp TCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEEC
T ss_pred cCCcccc---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEEC
Confidence 2344542 3458899999999987766554 35677899999999999997 33 889999999975
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=224.20 Aligned_cols=236 Identities=20% Similarity=0.150 Sum_probs=163.9
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+++.|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++ +|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----------l~---- 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----------LL---- 96 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----------EE----
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----------CC----
Confidence 378888888888886666778888888888888888876554 7788888888888887754 22
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
..++|++|++++|.++ +..+ ..++.|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+...+++
T Consensus 97 ~~~~L~~L~L~~N~l~---~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 VGPSIETLHAANNNIS---RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ECTTCCEEECCSSCCC---CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CCCCcCEEECcCCcCC---CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 2267777777777775 2222 234677777777777777767777777777777777777776556555546777
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|.+++..+ ...+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+ ..+++
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~l-~~l~~ 238 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--------LIEKAL-RFSQN 238 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--------EECTTC-CCCTT
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc--------ccchhh-ccCCC
Confidence 7777777777765422 3357777777777777774 4445667777777777777765 344443 23467
Q ss_pred CcEEeccCCccc-ccCCccccCCCCCceEEec
Q 037313 309 LEELYLSKNMFY-GDMPSDLANCSYFRILILG 339 (362)
Q Consensus 309 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~ 339 (362)
|+.|++++|.+. +.+|..+..++.|+.+++.
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777777777776 5566666677777766665
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-27 Score=222.02 Aligned_cols=236 Identities=18% Similarity=0.137 Sum_probs=196.7
Q ss_pred CCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCC
Q 037313 89 LGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKK 168 (362)
Q Consensus 89 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 168 (362)
...+++|++|++++|.+++..|..+.++++|++|++++|.+++. .| +..+++|++|++++|.++.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~--l~~l~~L~~L~Ls~N~l~~--- 94 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----------LD--LESLSTLRTLDLNNNYVQE--- 94 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE----------EE--CTTCTTCCEEECCSSEEEE---
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC----------cc--cccCCCCCEEEecCCcCCC---
Confidence 34556899999999999988888999999999999999999774 22 8899999999999999862
Q ss_pred cccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCcccc
Q 037313 169 AIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLS 248 (362)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 248 (362)
. + ..+.|++|++++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|++|++++|.+++..|..+.
T Consensus 95 l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 95 L-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp E-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGG
T ss_pred C-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHh
Confidence 2 1 238999999999999876543 468999999999999965555554 789999999999999988888775
Q ss_pred -CCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccc
Q 037313 249 -RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDL 327 (362)
Q Consensus 249 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 327 (362)
.+++|++|++++|.+++..+ ...+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+++ +|..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~--------~~~~~~-~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA--------FMGPEF-QSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC--------EECGGG-GGGTTCSEEECTTSCCCE-ECTTC
T ss_pred hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCC--------CCCHhH-cCCCCccEEEecCCcCcc-cchhh
Confidence 79999999999999996633 335899999999999987 455554 345999999999999984 78889
Q ss_pred cCCCCCceEEecccccc-cccccccccCCCCCee
Q 037313 328 ANCSYFRILILGFNDFS-GAIPKEIGNMTKLENL 360 (362)
Q Consensus 328 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 360 (362)
..+++|+.|++++|.+. +.+|..+..+++|+.+
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 99999999999999998 6677777766655543
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.7e-25 Score=216.24 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=89.5
Q ss_pred EcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCC
Q 037313 75 NISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIP 154 (362)
Q Consensus 75 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~ 154 (362)
+=++.+++ .+|+.+. +++++|+|++|++++..+.+|.++++|++|++++|.+++. .|..|.++++|+
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i----------~~~~f~~L~~L~ 103 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----------EDGAYQSLSHLS 103 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE----------CTTTTTTCTTCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc----------ChhHhcCCCCCC
Confidence 44445566 6776553 3799999999999977778899999999999999999764 233455666666
Q ss_pred CCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCccc-CchHHhhCCCCCcEEE
Q 037313 155 CPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGE-LPANICNNLPFLEILL 233 (362)
Q Consensus 155 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~ 233 (362)
+|++++|.++ ...+..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+. .|..+ ..+++|++|+
T Consensus 104 ~L~Ls~N~l~---~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~ 179 (635)
T 4g8a_A 104 TLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLD 179 (635)
T ss_dssp EEECTTCCCC---EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEE
T ss_pred EEEccCCcCC---CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-ccchhhhhhc
Confidence 6666666554 22233344555555555555555544444455555555555555554421 22222 2444555554
Q ss_pred cccCc
Q 037313 234 LDENN 238 (362)
Q Consensus 234 l~~n~ 238 (362)
+++|+
T Consensus 180 L~~N~ 184 (635)
T 4g8a_A 180 LSSNK 184 (635)
T ss_dssp CCSSC
T ss_pred ccCcc
Confidence 44443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.3e-26 Score=218.03 Aligned_cols=257 Identities=22% Similarity=0.248 Sum_probs=141.7
Q ss_pred CCCCCCCCCcceeeeee------cCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcE
Q 037313 48 RNWDTSSFVCNWTGITC------DVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLS 121 (362)
Q Consensus 48 ~~w~~~~~~c~~~g~~c------~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 121 (362)
..|....++|.|.+..+ .....+++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~ 85 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRT 85 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCE
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCE
Confidence 66777777888865421 111235778888888887 6676554 67888888888777 4555 5677888
Q ss_pred EEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccC----------------CcccccccccCCCcEEec
Q 037313 122 INFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKK----------------KAIKLRRFFWHEKKRVMA 185 (362)
Q Consensus 122 L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~l 185 (362)
|++++|.+++ +|. .+++|++|++++|.++... ..++. .+++|++|++
T Consensus 86 L~Ls~N~l~~-----------lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~L 148 (622)
T 3g06_A 86 LEVSGNQLTS-----------LPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSV 148 (622)
T ss_dssp EEECSCCCSC-----------CCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred EEcCCCcCCc-----------CCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEEC
Confidence 8888887754 333 3445555555555443110 01111 1245555555
Q ss_pred CCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEcccccccc
Q 037313 186 KNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSG 265 (362)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 265 (362)
++|.+++ +|. .+++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|.. .++|+.|++++|.++
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT- 214 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-
Confidence 5555543 222 2244555555555555 344 134666666666666643 2321 245555555555554
Q ss_pred ccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 266 AIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
.+|.. +++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++
T Consensus 215 ~l~~~---~~~L~~L~Ls~N~L~~--------lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 215 SLPAL---PSGLKELIVSGNRLTS--------LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp SCCCC---CTTCCEEECCSSCCSC--------CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred ccCCC---CCCCCEEEccCCccCc--------CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence 23321 2556666666665542 22 12255666666666655 3343 3455666666666666
Q ss_pred ccccccccCCCCCeeeC
Q 037313 346 AIPKEIGNMTKLENLDL 362 (362)
Q Consensus 346 ~~~~~~~~l~~L~~L~l 362 (362)
.+|..+.++++|+.|++
T Consensus 275 ~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 275 RLPESLIHLSSETTVNL 291 (622)
T ss_dssp SCCGGGGGSCTTCEEEC
T ss_pred cCCHHHhhccccCEEEe
Confidence 45556666666666553
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=6.6e-25 Score=204.61 Aligned_cols=244 Identities=28% Similarity=0.366 Sum_probs=140.8
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------c
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF----------F 138 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~----------~ 138 (362)
.+++.|++++|.+++ +|.. .++|++|++++|++++ +| .++++++|++|++++|.+++ +|... +
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCC
Confidence 345555555555542 2211 1467777777777764 55 46777777777777777654 33221 1
Q ss_pred ccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccC
Q 037313 139 FYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGEL 218 (362)
Q Consensus 139 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 218 (362)
....+| .++.+++|++|++++|.++. ++.. .++|++|++++|.++ .+| .+..+++|++|++++|.+. .+
T Consensus 184 ~l~~l~-~~~~l~~L~~L~l~~N~l~~----l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l 252 (454)
T 1jl5_A 184 QLEELP-ELQNLPFLTAIYADNNSLKK----LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TL 252 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSS----CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SC
T ss_pred cCCcCc-cccCCCCCCEEECCCCcCCc----CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cc
Confidence 111244 57777888888888887752 2211 246777777777776 455 3677777888888777776 34
Q ss_pred chHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEcccccccc--ccCccc-------------cCC-CCCCEEeC
Q 037313 219 PANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSG--AIPKEI-------------GNL-TKLKSLYL 282 (362)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~-------------~~l-~~L~~L~L 282 (362)
|. ..++|++|++++|++++ +|.. .++|++|++++|.+++ .+|..+ ... ++|+.|++
T Consensus 253 ~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~L 324 (454)
T 1jl5_A 253 PD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 324 (454)
T ss_dssp CS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEEC
T ss_pred cc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEEC
Confidence 43 23567777777776654 3332 2556666666666554 121111 111 35555555
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccc--ccccccccC
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG--AIPKEIGNM 354 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l 354 (362)
++|.+++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.++.++
T Consensus 325 s~N~l~~--------lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 325 SNNKLIE--------LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CSSCCSC--------CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CCCcccc--------cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 5555442 2221 256777777777666 3444 35667777777777776 566666665
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.9e-27 Score=209.40 Aligned_cols=225 Identities=21% Similarity=0.248 Sum_probs=187.3
Q ss_pred cEEEEEcCCCCCc-ccCCccCC-------CCCCCCEEeCCCCcccccCCccc--cCCCCCcEEEccCCCCcccCCccccc
Q 037313 70 RVTALNISGLNLT-GTIPSELG-------DLSSLQTLDLSFHWFSGSIPASI--YNMSSLLSINFTNNTLFAELPPIFFF 139 (362)
Q Consensus 70 ~l~~L~l~~~~l~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~p~~~~~ 139 (362)
.++.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..+ ..+++|++|++++|.+++
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------- 135 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-------- 135 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--------
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--------
Confidence 3788899999884 45666655 78999999999999999999887 899999999999999987
Q ss_pred cccCCcccCCC-----CCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccc--cCccc--cCcCCCcEEEee
Q 037313 140 YLKVPPTVGAL-----PRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGT--IPSSI--FNLSSLSNLDLS 210 (362)
Q Consensus 140 ~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~ 210 (362)
+|..++.+ ++|++|++++|.+. +..+..+..+++|++|++++|.+.+. .+..+ ..+++|++|+++
T Consensus 136 ---~~~~~~~l~~~~~~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 136 ---RDAWLAELQQWLKPGLKVLSIAQAHSL---NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp ---SSSHHHHHHTTCCTTCCEEEEESCSCC---CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred ---hhHHHHHHHHhhcCCCcEEEeeCCCCc---cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 34444444 89999999999997 66667888999999999999998765 33444 789999999999
Q ss_pred cCcCcc--cCchHHhhCCCCCcEEEcccCcccccCC-ccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcc
Q 037313 211 YNNLKG--ELPANICNNLPFLEILLLDENNFGRRIP-STLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSL 287 (362)
Q Consensus 211 ~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (362)
+|.+.+ .++..++..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++
T Consensus 210 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp TSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred CCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 999983 4455666688999999999999988664 45667899999999999999 7887776 8999999999999
Q ss_pred cCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 288 QGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
++ +|. +..+++|++|++++|++++
T Consensus 287 ~~--------~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 287 DR--------NPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CS--------CCC--TTTSCEEEEEECTTCTTTC
T ss_pred CC--------Chh--HhhCCCCCEEeccCCCCCC
Confidence 74 344 3456899999999999875
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.3e-25 Score=191.37 Aligned_cols=212 Identities=21% Similarity=0.240 Sum_probs=109.1
Q ss_pred cCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccc
Q 037313 84 TIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWL 163 (362)
Q Consensus 84 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 163 (362)
.+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----------EDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE----------CTTTTTTCTTCCEEECTTCCC
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc----------CHHHccCCcCCCEEECCCCcc
Confidence 4555443 3677777777777755555677777777777777766542 222344444444444444444
Q ss_pred cccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcc-cCchHHhhCCCCCcEEEcccCccccc
Q 037313 164 RQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKG-ELPANICNNLPFLEILLLDENNFGRR 242 (362)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~ 242 (362)
+ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++.
T Consensus 89 ~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 89 Q---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp C---EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEE
T ss_pred C---ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcC
Confidence 3 2222334445556666666666555444455555666666666655552 1333332 455555555555555544
Q ss_pred CCccccCCCCCC----eEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCc
Q 037313 243 IPSTLSRCKHLQ----TLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM 318 (362)
Q Consensus 243 ~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 318 (362)
.+..+..+++|+ +|++++|.+++..+..+ ...+|+.|++++|.++ .++...+..+++|+.|++++|.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS--------CCCTTTTTTCCSCCEEECCSSC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCcee--------ecCHhHhcccccccEEEccCCc
Confidence 444444333333 45555555553322222 2234555555555544 2333333334555555555555
Q ss_pred cc
Q 037313 319 FY 320 (362)
Q Consensus 319 i~ 320 (362)
++
T Consensus 236 ~~ 237 (276)
T 2z62_A 236 WD 237 (276)
T ss_dssp BC
T ss_pred cc
Confidence 54
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.2e-27 Score=224.25 Aligned_cols=280 Identities=20% Similarity=0.162 Sum_probs=155.1
Q ss_pred cEEEEEcCCCCCcc----cCCccCCCCCCCCEEeCCCCcccccCCcccc-----CCCCCcEEEccCCCCcccCCcccccc
Q 037313 70 RVTALNISGLNLTG----TIPSELGDLSSLQTLDLSFHWFSGSIPASIY-----NMSSLLSINFTNNTLFAELPPIFFFY 140 (362)
Q Consensus 70 ~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~p~~~~~~ 140 (362)
++++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------ 159 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC------ 159 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH------
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH------
Confidence 57777777777763 3466677777777777777776543333222 24567777777776654311
Q ss_pred ccCCcccCCCCCCCCCCCCCccccccCCccccccc-----ccCCCcEEecCCcccccc----cCccccCcCCCcEEEeec
Q 037313 141 LKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRF-----FWHEKKRVMAKNNFLTGT----IPSSIFNLSSLSNLDLSY 211 (362)
Q Consensus 141 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~ 211 (362)
..++..+..+++|++|++++|.++. .....+. ..++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 0134445566777777777776652 1111111 244677777777776653 345555667777777777
Q ss_pred CcCcccCc----hHHhhCCCCCcEEEcccCccccc----CCccccCCCCCCeEEccccccccccCccccC-----CCCCC
Q 037313 212 NNLKGELP----ANICNNLPFLEILLLDENNFGRR----IPSTLSRCKHLQTLSLSVNGFSGAIPKEIGN-----LTKLK 278 (362)
Q Consensus 212 n~l~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~ 278 (362)
|.+.+... ..+...+++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 76653221 22222456677777777766543 4445555667777777777665443333321 24666
Q ss_pred EEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccC-----CCCCceEEeccccccc----cccc
Q 037313 279 SLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLAN-----CSYFRILILGFNDFSG----AIPK 349 (362)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~ 349 (362)
.|++++|.+++.. ...++..+.. +++|++|++++|++++..+..+.. .++|++|++++|.+++ .+|.
T Consensus 317 ~L~L~~n~l~~~~---~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 317 SLWVKSCSFTAAC---CSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp EEECTTSCCBGGG---HHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred eeEcCCCCCchHH---HHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 6666666654321 0012222222 255666666666655433332221 4566666666666654 4555
Q ss_pred ccccCCCCCeeeC
Q 037313 350 EIGNMTKLENLDL 362 (362)
Q Consensus 350 ~~~~l~~L~~L~l 362 (362)
.+..+++|+.|++
T Consensus 393 ~l~~~~~L~~L~l 405 (461)
T 1z7x_W 393 TLLANHSLRELDL 405 (461)
T ss_dssp HHHHCCCCCEEEC
T ss_pred HHHhCCCccEEEC
Confidence 5555666666553
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.9e-25 Score=208.21 Aligned_cols=253 Identities=23% Similarity=0.287 Sum_probs=140.5
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCC-------------cEEEccCCCCcc--c
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSL-------------LSINFTNNTLFA--E 132 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~~~~--~ 132 (362)
..++++|++++|.+ +.+|+.++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ .
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 35788899999988 6888889999999999999998888888888887754 888888888766 2
Q ss_pred CCccc-------cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCc
Q 037313 133 LPPIF-------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLS 205 (362)
Q Consensus 133 ~p~~~-------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 205 (362)
+|..+ +....+|.. .++|++|++++|.++.. +. ..++|++|++++|.+++ +| .+.++++|+
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l----~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL----SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC----CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc----cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 11111 000012221 24555556666555421 11 11467777777777664 55 466777777
Q ss_pred EEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCC
Q 037313 206 NLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (362)
+|++++|.++ .+|. ..++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|... ++|+.|++++|
T Consensus 157 ~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n 225 (454)
T 1jl5_A 157 IIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN 225 (454)
T ss_dssp EEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred EEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence 7777777766 3443 23467777777777654 44 46677777777777777763 33322 46777777777
Q ss_pred cccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 286 SLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
.++ .+|. +..+++|++|++++|++++ +|.. .++|+.|++++|.+++ +|... ++|+.|++
T Consensus 226 ~l~--------~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l 284 (454)
T 1jl5_A 226 ILE--------ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSLTFLDV 284 (454)
T ss_dssp CCS--------SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred cCC--------cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcCCEEEC
Confidence 665 3442 3345778888888887764 4432 3677777787777774 44432 45555543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.4e-24 Score=187.10 Aligned_cols=207 Identities=19% Similarity=0.161 Sum_probs=175.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..++++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++. .+..+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~ 96 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL----------ALGAF 96 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE----------CTTTT
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc----------Chhhh
Confidence 45799999999999977777899999999999999999977777899999999999999999774 45678
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccc-cCccccCcCCCcEEEeecCcCcccCchHHhhCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGT-IPSSIFNLSSLSNLDLSYNNLKGELPANICNNL 226 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (362)
.++++|++|++++|.+. ...+..+..+++|++|++++|.+++. +|..+.++++|++|++++|.+++..+..+ ..+
T Consensus 97 ~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l 172 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVL 172 (276)
T ss_dssp TTCTTCCEEECTTSCCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHH
T ss_pred cCCccccEEECCCCCcc---ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh-hhh
Confidence 99999999999999987 45555688899999999999999874 68899999999999999999984433333 355
Q ss_pred CCCc----EEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 227 PFLE----ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 227 ~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
++|+ +|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 5555 899999999766555444 4589999999999996666677899999999999998864
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.7e-24 Score=187.26 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=94.1
Q ss_pred ccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCC
Q 037313 174 RFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHL 253 (362)
Q Consensus 174 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (362)
+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|++++|++++..+..+..+++|
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 445566777777777777655555677777777777777776 4554444466777777777777766555556667777
Q ss_pred CeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCC
Q 037313 254 QTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSY 332 (362)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 332 (362)
++|++++|.+++..+..+..+++|+.|++++|.+.+ . +++++.++++.|.++|.+|..++.++.
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~--------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T--------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------C--------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------c--------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777777777776555556667777777777775532 1 245666666777777777766665543
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.1e-24 Score=203.80 Aligned_cols=238 Identities=26% Similarity=0.271 Sum_probs=180.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc----------c
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF----------F 138 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~----------~ 138 (362)
.+++.|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++. |... +
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CCCCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CCCCCCcCEEECCCC
Confidence 56788888888877 5555 4677888888888776 4554 567777777777776542 2210 0
Q ss_pred ccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccC
Q 037313 139 FYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGEL 218 (362)
Q Consensus 139 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 218 (362)
....+|.. +++|++|++++|.++. ++. ...+|+.|++++|.+++ +| ..+++|+.|++++|.++ .+
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~----l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l 196 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLAS----LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SL 196 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSC----CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCC----cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CC
Confidence 01113332 3788999999998862 222 35789999999999985 55 55789999999999998 56
Q ss_pred chHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccccccccc
Q 037313 219 PANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAEL 298 (362)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 298 (362)
|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +| ..+++|+.|++++|.++ .+
T Consensus 197 ~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~--------~l 256 (622)
T 3g06_A 197 PT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT--------SL 256 (622)
T ss_dssp CC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS--------CC
T ss_pred CC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC--------cC
Confidence 64 4578999999999986 4443 35889999999999984 56 45689999999999987 45
Q ss_pred ChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCC
Q 037313 299 PANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMT 355 (362)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 355 (362)
|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 257 p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 257 PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 54 3478999999999998 7899999999999999999999988877665443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.8e-23 Score=181.90 Aligned_cols=203 Identities=21% Similarity=0.225 Sum_probs=128.8
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccc
Q 037313 93 SSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKL 172 (362)
Q Consensus 93 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 172 (362)
...+++++++++++ .+|..+. +++++|++++|.+++. .+..+..+++|++|++++|.++ ...+.
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~---~i~~~ 79 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL----------PSKAFHRLTKLRLLYLNDNKLQ---TLPAG 79 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCC----------CTTSSSSCTTCCEEECCSSCCS---CCCTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCee----------CHHHhcCCCCCCEEECCCCccC---eeChh
Confidence 35789999999988 5776554 6899999999988653 2345677777777777777665 22233
Q ss_pred cccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCC
Q 037313 173 RRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKH 252 (362)
Q Consensus 173 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 252 (362)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+++..+..+..+++
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 3455666666666666666554555566666666666666666 444444446666666666666665544444566666
Q ss_pred CCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccc
Q 037313 253 LQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 253 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
|++|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC--------cCCHHHhccccCCCEEEecCCCee
Confidence 666666666666544445666666666666666655 334444444466666666666654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.8e-23 Score=183.56 Aligned_cols=204 Identities=22% Similarity=0.295 Sum_probs=153.2
Q ss_pred cCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccC
Q 037313 88 ELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKK 167 (362)
Q Consensus 88 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 167 (362)
.+.++++++++++++++++ .+|..+. +++++|++++|.+++. .+..+..+++|++|++++|.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~-- 69 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTF----------SLATLMPYTRLTQLNLDRAELTK-- 69 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEE----------EGGGGTTCTTCCEEECTTSCCCE--
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCcc----------CHHHhhcCCCCCEEECCCCccCc--
Confidence 4678899999999999988 6776664 6899999999998764 45677888888888888888762
Q ss_pred CcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccc
Q 037313 168 KAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTL 247 (362)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 247 (362)
++.. ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+++..+..+++|++|++++|++++..+..+
T Consensus 70 --~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 70 --LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp --EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred --ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 2222 56778888888888877 56777777888888888888887 5555544577788888888888776666666
Q ss_pred cCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccc
Q 037313 248 SRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 248 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
..+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|..++.. ++|+.+++++|.+.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--------~ip~~~~~~-~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--------TIPKGFFGS-HLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTT-CCCSEEECCSCCBC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--------ccChhhccc-ccCCeEEeCCCCcc
Confidence 77788888888888887554555667788888888888776 566666554 67888888887765
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9.1e-24 Score=183.95 Aligned_cols=224 Identities=21% Similarity=0.272 Sum_probs=159.2
Q ss_pred EEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCC
Q 037313 74 LNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRI 153 (362)
Q Consensus 74 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L 153 (362)
+++..+.+.+.. .+..+++|++|++++|.++. + +.+..+++|++|++++|.+++.
T Consensus 24 l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--------------------- 78 (272)
T 3rfs_A 24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--------------------- 78 (272)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC---------------------
T ss_pred HHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc---------------------
Confidence 344444444222 24556677777777776652 2 3466777777777777766431
Q ss_pred CCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEE
Q 037313 154 PCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILL 233 (362)
Q Consensus 154 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 233 (362)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|+
T Consensus 79 ------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 79 ------------------SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp ------------------GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ------------------hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEE
Confidence 12334556677777777777666666788888888888888888 55555545788888888
Q ss_pred cccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEe
Q 037313 234 LDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELY 313 (362)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 313 (362)
+++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.++ .++...+..+++|+.|+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEE
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC--------ccCHHHHhCCcCCCEEE
Confidence 8888887766666788888888888888888666666788888888888888876 34444455568888888
Q ss_pred ccCCcccccCCccccCCCCCceEEecccccccccccccccCCC
Q 037313 314 LSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTK 356 (362)
Q Consensus 314 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 356 (362)
+++|.+.+ .+++|++++++.|.++|.+|.+++.++.
T Consensus 212 l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 212 LHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 88887764 3556888888888888888887776543
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=5.6e-26 Score=204.12 Aligned_cols=269 Identities=17% Similarity=0.216 Sum_probs=203.4
Q ss_pred CCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCC--CCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcc
Q 037313 54 SFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDL--SSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFA 131 (362)
Q Consensus 54 ~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 131 (362)
..|..|.++.++ ...++.++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 344568888775 356888999998876 4455666 7899999999998876554 5678999999999998754
Q ss_pred cCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCc-ccccc-cCccccCcCCCcEEEe
Q 037313 132 ELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNN-FLTGT-IPSSIFNLSSLSNLDL 209 (362)
Q Consensus 132 ~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l 209 (362)
. .++..+..+++|++|++++|.++ +..+..+..+++|++|++++| .+++. ++..+.++++|++|++
T Consensus 108 ~---------~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 108 S---------TLHGILSQCSKLQNLSLEGLRLS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp H---------HHHHHHTTBCCCSEEECTTCBCC---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred H---------HHHHHHhhCCCCCEEeCcCcccC---HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 2 14556788899999999999876 556666778899999999999 67753 5666788999999999
Q ss_pred ecC-cCccc-CchHHhhCCC-CCcEEEcccC--ccc-ccCCccccCCCCCCeEEccccc-cccccCccccCCCCCCEEeC
Q 037313 210 SYN-NLKGE-LPANICNNLP-FLEILLLDEN--NFG-RRIPSTLSRCKHLQTLSLSVNG-FSGAIPKEIGNLTKLKSLYL 282 (362)
Q Consensus 210 ~~n-~l~~~-~~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 282 (362)
++| .+++. ++..+ ..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.++++|+.|++
T Consensus 176 ~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 176 SWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 999 88754 34434 4788 9999999999 454 3456667789999999999999 77777888889999999999
Q ss_pred cCCc-ccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCC-CCCceEEeccccccccccccccc
Q 037313 283 SQNS-LQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANC-SYFRILILGFNDFSGAIPKEIGN 353 (362)
Q Consensus 283 ~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 353 (362)
++|. +.. ..... +..+++|+.|++++| ++. ..+..+ ..++.|++++|.+++..|..++.
T Consensus 255 ~~~~~~~~-------~~~~~-l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 255 SRCYDIIP-------ETLLE-LGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCTTCCG-------GGGGG-GGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCH-------HHHHH-HhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 9985 221 11112 234589999999999 442 233333 23667778999999888877654
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.6e-26 Score=216.68 Aligned_cols=284 Identities=18% Similarity=0.157 Sum_probs=181.3
Q ss_pred CcEEEEEcCCCCCcccCCccC-CCCC----CCCEEeCCCCcccc----cCCccccCCCCCcEEEccCCCCcccCCccccc
Q 037313 69 QRVTALNISGLNLTGTIPSEL-GDLS----SLQTLDLSFHWFSG----SIPASIYNMSSLLSINFTNNTLFAELPPIFFF 139 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l-~~l~----~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 139 (362)
.++++|++++|.+++..+..+ ..++ +|++|++++|.++. .++..+.++++|++|++++|.+++..+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--- 132 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL--- 132 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH---
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH---
Confidence 567777777777764333222 2233 57777777777763 45666777777777777777765431110
Q ss_pred cccCCcc-cCCCCCCCCCCCCCccccccC-CcccccccccCCCcEEecCCcccccccCcccc-----CcCCCcEEEeecC
Q 037313 140 YLKVPPT-VGALPRIPCPPQDTLWLRQKK-KAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIF-----NLSSLSNLDLSYN 212 (362)
Q Consensus 140 ~~~~~~~-~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n 212 (362)
+... ....++|++|++++|.++... ..++..+..+++|++|++++|.+++..+..+. ..++|++|++++|
T Consensus 133 ---l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 133 ---LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp ---HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred ---HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 1111 123456777777777765211 12344445567888888888877655444443 2557888888888
Q ss_pred cCccc----CchHHhhCCCCCcEEEcccCcccccC-----CccccCCCCCCeEEccccccccc----cCccccCCCCCCE
Q 037313 213 NLKGE----LPANICNNLPFLEILLLDENNFGRRI-----PSTLSRCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKS 279 (362)
Q Consensus 213 ~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~ 279 (362)
.+++. ++..+. .+++|++|++++|.++... +.....+++|++|++++|.+++. ++..+..+++|+.
T Consensus 210 ~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp CCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 77742 343333 6788888888888775432 22233577888888888888754 5666667888888
Q ss_pred EeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc----CCccccCCCCCceEEeccccccccccccccc--
Q 037313 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD----MPSDLANCSYFRILILGFNDFSGAIPKEIGN-- 353 (362)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 353 (362)
|++++|.+++... ..+...+....++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+..
T Consensus 289 L~Ls~n~i~~~~~---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 289 LSLAGNELGDEGA---RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp EECTTCCCHHHHH---HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred EECCCCCCchHHH---HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 8888887753211 112222222335899999999988754 4566777889999999999988765554443
Q ss_pred ---CCCCCeeeC
Q 037313 354 ---MTKLENLDL 362 (362)
Q Consensus 354 ---l~~L~~L~l 362 (362)
.++|+.|++
T Consensus 366 ~~~~~~L~~L~L 377 (461)
T 1z7x_W 366 GQPGSVLRVLWL 377 (461)
T ss_dssp TSTTCCCCEEEC
T ss_pred cCCCCceEEEEC
Confidence 668888875
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.9e-23 Score=181.46 Aligned_cols=200 Identities=25% Similarity=0.230 Sum_probs=175.7
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++++++++++++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++ ++..
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-----------LQVD- 73 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-----------EECC-
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-----------ccCC-
Confidence 467899999999998 6777664 689999999999998888899999999999999999876 3332
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
+.+++|++|++++|.++ .++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..++
T Consensus 74 ~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 148 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148 (290)
T ss_dssp SCCTTCCEEECCSSCCS----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCT
T ss_pred CCCCcCCEEECCCCcCC----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhccccc
Confidence 78899999999999985 55667788999999999999999877788999999999999999998 67777766899
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
+|++|++++|+++...+..+..+++|++|++++|.++ .+|..+...++|+.+++++|.+.
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999999999998766667788999999999999999 78888888899999999999875
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.3e-25 Score=205.66 Aligned_cols=259 Identities=17% Similarity=0.129 Sum_probs=186.3
Q ss_pred cCCccCCCCCCCCEEeCCCCccccc----CCccccCCCCCcEEEccCCC---CcccCCccccccccCCcccCCCCCCCCC
Q 037313 84 TIPSELGDLSSLQTLDLSFHWFSGS----IPASIYNMSSLLSINFTNNT---LFAELPPIFFFYLKVPPTVGALPRIPCP 156 (362)
Q Consensus 84 ~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~---~~~~~p~~~~~~~~~~~~~~~l~~L~~l 156 (362)
.++..+..+++|++|++++|.+++. ++..+.++++|++|++++|. +++.+|..+. .+...+..+++|++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~---~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR---LLLQALLKCPKLHTV 99 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH---HHHHHHTTCTTCCEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH---HHHHHHhhCCcccEE
Confidence 3566677788888888888888765 33446678888888888864 3333222110 122234678888888
Q ss_pred CCCCccccccCC-cccccccccCCCcEEecCCcccccccCcccc----Cc---------CCCcEEEeecCcCcc-cCch-
Q 037313 157 PQDTLWLRQKKK-AIKLRRFFWHEKKRVMAKNNFLTGTIPSSIF----NL---------SSLSNLDLSYNNLKG-ELPA- 220 (362)
Q Consensus 157 ~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~----~l---------~~L~~L~l~~n~l~~-~~~~- 220 (362)
++++|.++..+. .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.+.+ .++.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 888888763211 3566677889999999999998755444443 33 899999999999873 3332
Q ss_pred -HHhhCCCCCcEEEcccCcccc-----cCCccccCCCCCCeEEccccccc----cccCccccCCCCCCEEeCcCCcccCc
Q 037313 221 -NICNNLPFLEILLLDENNFGR-----RIPSTLSRCKHLQTLSLSVNGFS----GAIPKEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 221 -~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ ..+|..+..+++|+.|++++|.+++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 223478899999999998863 34447788999999999999996 56788888999999999999988642
Q ss_pred ccccccccChhhh-cCcCCCcEEeccCCcccc----cCCccc-cCCCCCceEEecccccccccc
Q 037313 291 VNRLSAELPANFY-NNIPFLEELYLSKNMFYG----DMPSDL-ANCSYFRILILGFNDFSGAIP 348 (362)
Q Consensus 291 ~~~~~~~~~~~~~-~~~~~L~~L~L~~n~i~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 348 (362)
. ...++..+. ..+++|+.|++++|.+++ .+|..+ ..+++|++|++++|.+++..+
T Consensus 260 ~---~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 260 G---AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp H---HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred h---HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 1 011333332 125889999999999987 477777 568999999999999987653
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.8e-23 Score=177.85 Aligned_cols=191 Identities=25% Similarity=0.273 Sum_probs=145.1
Q ss_pred CCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCC
Q 037313 55 FVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELP 134 (362)
Q Consensus 55 ~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 134 (362)
+|+.|.|..|.. ..+++++++++++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++.
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 74 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-- 74 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc--
Confidence 567899999953 4567899999998 7777665 6899999999999988888899999999999999998653
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcC
Q 037313 135 PIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNL 214 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 214 (362)
.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 75 --------~~~~~~---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 75 --------SAGVFD---------------------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp --------CTTTTT---------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------CHhHhc---------------------------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 222233 345556666666666655556667777888888888877
Q ss_pred cccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 215 KGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
+ .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 120 ~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 120 K-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred C-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7 5665555577788888888888776666667778888888888888886666677778888888888887754
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.7e-25 Score=200.77 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=169.4
Q ss_pred EEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCC----ccccCCC-CCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 74 LNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIP----ASIYNMS-SLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 74 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+++.+++++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++. .+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------~~~~l~ 72 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----------NSDELV 72 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS----------CHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH----------HHHHHH
Confidence 4677777777777766666668888888888776555 5666777 788888888887664 223333
Q ss_pred CC-----CCCCCCCCCCccccccCCccccc----cccc-CCCcEEecCCcccccccCcccc----C-cCCCcEEEeecCc
Q 037313 149 AL-----PRIPCPPQDTLWLRQKKKAIKLR----RFFW-HEKKRVMAKNNFLTGTIPSSIF----N-LSSLSNLDLSYNN 213 (362)
Q Consensus 149 ~l-----~~L~~l~l~~~~~~~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~l~----~-l~~L~~L~l~~n~ 213 (362)
.+ ++|++|++++|.++ ...+.. +... ++|++|++++|.+++..+..+. . .++|++|++++|.
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHhccCCCccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 32 77888888888776 222222 3333 7888888888888766554443 3 3588888888888
Q ss_pred CcccCchHHh---hCCC-CCcEEEcccCcccccCCccc----cCC-CCCCeEEccccccccc----cCccccC-CCCCCE
Q 037313 214 LKGELPANIC---NNLP-FLEILLLDENNFGRRIPSTL----SRC-KHLQTLSLSVNGFSGA----IPKEIGN-LTKLKS 279 (362)
Q Consensus 214 l~~~~~~~~~---~~l~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~ 279 (362)
+.+.....+. ...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 8754333221 2344 88888888888876655433 344 5888888888888753 4444544 358888
Q ss_pred EeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc-------cCCccccCCCCCceEEecccccccc
Q 037313 280 LYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG-------DMPSDLANCSYFRILILGFNDFSGA 346 (362)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (362)
|++++|.+++.... .+. ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.+.
T Consensus 230 L~Ls~N~l~~~~~~---~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLE---NLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHH---HHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHH---HHH-HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 88888887653211 111 223345778888888887432 2334566777888888888888754
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=189.26 Aligned_cols=230 Identities=18% Similarity=0.181 Sum_probs=177.0
Q ss_pred CCCCEEeCCCCcccccC-Cc--cccCCCCCcEEEccCCCCcccCCccccccccCCccc--CCCCCCCCCCCCCccccccC
Q 037313 93 SSLQTLDLSFHWFSGSI-PA--SIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV--GALPRIPCPPQDTLWLRQKK 167 (362)
Q Consensus 93 ~~L~~L~l~~n~~~~~~-~~--~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~ 167 (362)
..++.+.+.++.++... .. .+..+++|++|++++|.+++. .|..+ ..+++|++|++++|.++...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT----------MPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC----------CCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc----------hhhhhhhccCCCCCEEEeecccccchh
Confidence 35788888887765321 11 122356799999999999876 56666 88999999999999887321
Q ss_pred Cccc-ccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCccc--CchHH-hhCCCCCcEEEcccCccccc-
Q 037313 168 KAIK-LRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGE--LPANI-CNNLPFLEILLLDENNFGRR- 242 (362)
Q Consensus 168 ~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~-~~~l~~L~~L~l~~n~~~~~- 242 (362)
...+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++... ...+++|++|++++|+++..
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 1111 3345788999999999999988888999999999999999998643 22222 24788999999999998532
Q ss_pred -CCc-cccCCCCCCeEEccccccccccCccccCC---CCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCC
Q 037313 243 -IPS-TLSRCKHLQTLSLSVNGFSGAIPKEIGNL---TKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKN 317 (362)
Q Consensus 243 -~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 317 (362)
.+. .+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.++ .+|..+. ++|+.|++++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------~lp~~~~---~~L~~L~Ls~N 282 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------QVPKGLP---AKLRVLDLSSN 282 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--------SCCSCCC---SCCSCEECCSC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--------chhhhhc---CCCCEEECCCC
Confidence 112 24678999999999999998778777776 69999999999987 4565553 68999999999
Q ss_pred cccccCCccccCCCCCceEEeccccccc
Q 037313 318 MFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 318 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
++++. |. +..+++|+.|++++|++++
T Consensus 283 ~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99853 43 6788999999999999974
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.1e-24 Score=195.89 Aligned_cols=254 Identities=17% Similarity=0.151 Sum_probs=189.5
Q ss_pred EEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC-CCCCCCCCCccccccCCccccccc
Q 037313 97 TLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP-RIPCPPQDTLWLRQKKKAIKLRRF 175 (362)
Q Consensus 97 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~ 175 (362)
++++++|.+++.+|..+...++|++|++++|.+++..+.. +...+..++ +|++|++++|.++ ...+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~------l~~~l~~~~~~L~~L~Ls~N~l~---~~~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE------LIQAFANTPASVTSLNLSGNSLG---FKNSDELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH------HHHHHHTCCTTCCEEECCSSCGG---GSCHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH------HHHHHHhCCCceeEEECcCCCCC---HHHHHHHH
Confidence 4688999999999888888888999999999987641100 115677888 8999999999997 43343444
Q ss_pred cc-----CCCcEEecCCcccccccCcccc----Cc-CCCcEEEeecCcCcccCchHHhh---C-CCCCcEEEcccCcccc
Q 037313 176 FW-----HEKKRVMAKNNFLTGTIPSSIF----NL-SSLSNLDLSYNNLKGELPANICN---N-LPFLEILLLDENNFGR 241 (362)
Q Consensus 176 ~~-----~~L~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~~---~-l~~L~~L~l~~n~~~~ 241 (362)
.. +.|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. . .++|++|++++|.++.
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 33 8999999999999977666544 44 89999999999998554444432 2 3699999999999975
Q ss_pred cC----CccccCCC-CCCeEEccccccccccCccc----cCC-CCCCEEeCcCCcccCcccccccccChhhhcCcCCCcE
Q 037313 242 RI----PSTLSRCK-HLQTLSLSVNGFSGAIPKEI----GNL-TKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEE 311 (362)
Q Consensus 242 ~~----~~~l~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 311 (362)
.. +..+...+ +|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++.. ...++..+....++|++
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---YAELAYIFSSIPNHVVS 229 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHHSCTTCCE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---HHHHHHHHhcCCCCceE
Confidence 43 33445555 99999999999987665444 445 59999999999987532 12355555554468999
Q ss_pred EeccCCcccccCC----ccccCCCCCceEEeccccccc-------ccccccccCCCCCeeeC
Q 037313 312 LYLSKNMFYGDMP----SDLANCSYFRILILGFNDFSG-------AIPKEIGNMTKLENLDL 362 (362)
Q Consensus 312 L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l 362 (362)
|++++|++++..+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.||+
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 9999999975433 456788999999999999543 23445667777877765
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.4e-23 Score=175.57 Aligned_cols=196 Identities=19% Similarity=0.186 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCc-ccccCCccccCCCCCcEEEccC-CCCcccCCccccccccCCccc
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHW-FSGSIPASIYNMSSLLSINFTN-NTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~~~~~ 147 (362)
+++.|++++|++++..+..+.++++|++|++++|+ +++..+..+.++++|++|++++ |.+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----------------
Confidence 45555555555553333345555555555555554 4433333445555555555554 44432
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCc---EEEeecC-cCcccCchHHh
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLS---NLDLSYN-NLKGELPANIC 223 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~ 223 (362)
..+..+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+. .++...+
T Consensus 96 ---------------------i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~ 151 (239)
T 2xwt_C 96 ---------------------IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAF 151 (239)
T ss_dssp ---------------------ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTT
T ss_pred ---------------------cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccc
Confidence 223345556677777777777765 454 66777777 8888888 776 5665555
Q ss_pred hCCCCCc-EEEcccCcccccCCccccCCCCCCeEEccccc-cccccCccccCC-CCCCEEeCcCCcccCcccccccccCh
Q 037313 224 NNLPFLE-ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNG-FSGAIPKEIGNL-TKLKSLYLSQNSLQGIVNRLSAELPA 300 (362)
Q Consensus 224 ~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~ 300 (362)
..+++|+ +|++++|+++...+..+.. ++|++|++++|. +++..+..+..+ ++|+.|++++|.++ .+|.
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--------~l~~ 222 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--------ALPS 222 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC--------CCCC
T ss_pred cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc--------cCCh
Confidence 5778888 8888888876333333333 788888888884 775556677777 88888888888876 3444
Q ss_pred hhhcCcCCCcEEeccCC
Q 037313 301 NFYNNIPFLEELYLSKN 317 (362)
Q Consensus 301 ~~~~~~~~L~~L~L~~n 317 (362)
. .+++|+.|+++++
T Consensus 223 ~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K---GLEHLKELIARNT 236 (239)
T ss_dssp T---TCTTCSEEECTTC
T ss_pred h---HhccCceeeccCc
Confidence 3 2467888888776
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=198.36 Aligned_cols=245 Identities=19% Similarity=0.224 Sum_probs=189.6
Q ss_pred cCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccc-------cccCCC
Q 037313 108 SIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRR-------FFWHEK 180 (362)
Q Consensus 108 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-------~~~~~L 180 (362)
.++..+.++++|++|++++|.++...+. .++..+..+++|++|++++|.+....+.+|..+ ..+++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~------~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAAR------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHH------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHH------HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 4777888899999999999998764211 133457789999999999986654334445444 678999
Q ss_pred cEEecCCccccc----ccCccccCcCCCcEEEeecCcCcccCchHHhh---CC---------CCCcEEEcccCccc-ccC
Q 037313 181 KRVMAKNNFLTG----TIPSSIFNLSSLSNLDLSYNNLKGELPANICN---NL---------PFLEILLLDENNFG-RRI 243 (362)
Q Consensus 181 ~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~~~-~~~ 243 (362)
++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ ...
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999999987 46778889999999999999997443333321 23 89999999999987 334
Q ss_pred C---ccccCCCCCCeEEcccccccc-----ccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEecc
Q 037313 244 P---STLSRCKHLQTLSLSVNGFSG-----AIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLS 315 (362)
Q Consensus 244 ~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 315 (362)
+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+++.. .+.++..+. .+++|+.|+++
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~-~~~~L~~L~L~ 252 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALK-SWPNLRELGLN 252 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGG-GCTTCCEEECT
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHc-cCCCcCEEECC
Confidence 4 456788999999999999973 23447888999999999999885311 124555444 44899999999
Q ss_pred CCccccc----CCcccc--CCCCCceEEeccccccc----cccccc-ccCCCCCeeeC
Q 037313 316 KNMFYGD----MPSDLA--NCSYFRILILGFNDFSG----AIPKEI-GNMTKLENLDL 362 (362)
Q Consensus 316 ~n~i~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l 362 (362)
+|++++. ++..+. .+++|+.|++++|.+++ .+|..+ .++++|+.|++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 9999865 566664 48999999999999997 488877 66899999975
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.7e-24 Score=189.49 Aligned_cols=236 Identities=17% Similarity=0.093 Sum_probs=190.5
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCccccc-CCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGS-IPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
.+++.|+++++.+.+..+. +.++++|++|++++|.+++. ++..+.++++|++|++++|.+++. .+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----------~~~~l 138 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----------IVNTL 138 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH----------HHHHH
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH----------HHHHH
Confidence 6899999999999876655 66899999999999999876 888889999999999999998765 66778
Q ss_pred CCCCCCCCCCCCCc-cccccCCcccccccccCCCcEEecCCc-ccccc-cCccccCcC-CCcEEEeecC--cCc-ccCch
Q 037313 148 GALPRIPCPPQDTL-WLRQKKKAIKLRRFFWHEKKRVMAKNN-FLTGT-IPSSIFNLS-SLSNLDLSYN--NLK-GELPA 220 (362)
Q Consensus 148 ~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~ 220 (362)
+.+++|++|++++| .++. ..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++.
T Consensus 139 ~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 88999999999999 5652 135566778899999999999 88865 567788899 9999999999 555 34554
Q ss_pred HHhhCCCCCcEEEcccCc-ccccCCccccCCCCCCeEEccccc-cccccCccccCCCCCCEEeCcCCcccCccccccccc
Q 037313 221 NICNNLPFLEILLLDENN-FGRRIPSTLSRCKHLQTLSLSVNG-FSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAEL 298 (362)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 298 (362)
.+ ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +.+. .
T Consensus 217 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~-------~ 287 (336)
T 2ast_B 217 LV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG-------T 287 (336)
T ss_dssp HH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT-------C
T ss_pred HH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH-------H
Confidence 44 479999999999998 777777788999999999999995 44333346788999999999998 4321 1
Q ss_pred ChhhhcCcCCCcEEeccCCcccccCCccccC
Q 037313 299 PANFYNNIPFLEELYLSKNMFYGDMPSDLAN 329 (362)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 329 (362)
-..+. ..++.|++++|++++..|..++.
T Consensus 288 ~~~l~---~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 288 LQLLK---EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HHHHH---HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHH---hhCcceEEecccCccccCCcccc
Confidence 11222 33667779999999988887765
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=183.01 Aligned_cols=229 Identities=19% Similarity=0.204 Sum_probs=180.5
Q ss_pred CcEEEEEcCCCCCccc-CCc--cCCCCCCCCEEeCCCCcccccCCccc--cCCCCCcEEEccCCCCcccCCccccccccC
Q 037313 69 QRVTALNISGLNLTGT-IPS--ELGDLSSLQTLDLSFHWFSGSIPASI--YNMSSLLSINFTNNTLFAELPPIFFFYLKV 143 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~-~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~ 143 (362)
.+++.+.+.++.++.. +.. ....+++|++|++++|.+++..|..+ .++++|++|++++|.+++..|. +
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------L 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-------H
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-------h
Confidence 3567788888777532 111 12234679999999999999999888 8899999999999999875321 1
Q ss_pred C-cccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccc--c--CccccCcCCCcEEEeecCcCcccC
Q 037313 144 P-PTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGT--I--PSSIFNLSSLSNLDLSYNNLKGEL 218 (362)
Q Consensus 144 ~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~ 218 (362)
+ ..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .+
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 212 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSP---AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP 212 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSC---CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred HHHHhhhccCCCEEEeeCCCcc---hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence 1 34557899999999999997 66677788999999999999997653 2 233468999999999999997 44
Q ss_pred ch---HHhhCCCCCcEEEcccCcccccCCccccCC---CCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCccc
Q 037313 219 PA---NICNNLPFLEILLLDENNFGRRIPSTLSRC---KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVN 292 (362)
Q Consensus 219 ~~---~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (362)
+. .++..+++|++|++++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|.+++.
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-- 287 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-- 287 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC--
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC--
Confidence 43 344578999999999999988878777766 79999999999999 7787764 7999999999999742
Q ss_pred ccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 293 RLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
|. ...+++|+.|++++|+++.
T Consensus 288 ------~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 ------PQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ------CC--TTSCCCCSCEECSSTTTSC
T ss_pred ------ch--hhhCCCccEEECcCCCCCC
Confidence 22 2345899999999999863
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.8e-22 Score=174.44 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=134.7
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.++++|+++++.++ .++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~----------------- 99 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN----------------- 99 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-----------------
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-----------------
Confidence 35666666666665 233 455666666666666666532 22 5566666666666665532
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
+ ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+. .++. + ..+++
T Consensus 100 ---------------------~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~ 152 (308)
T 1h6u_A 100 ---------------------V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP-L-AGLTN 152 (308)
T ss_dssp ---------------------C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTT
T ss_pred ---------------------c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc-c-cCCCC
Confidence 1 1355678889999999998863 3 3888899999999999888 4554 3 47889
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCC
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPF 308 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 308 (362)
|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +..+++
T Consensus 153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~--------~~--l~~l~~ 218 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--------SP--LANTSN 218 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC--------GG--GTTCTT
T ss_pred ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc--------cc--ccCCCC
Confidence 9999999998865433 7888999999999998884433 77888999999999988742 22 344588
Q ss_pred CcEEeccCCcccc
Q 037313 309 LEELYLSKNMFYG 321 (362)
Q Consensus 309 L~~L~L~~n~i~~ 321 (362)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999998864
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.6e-22 Score=171.32 Aligned_cols=199 Identities=18% Similarity=0.259 Sum_probs=129.7
Q ss_pred cCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCC
Q 037313 108 SIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKN 187 (362)
Q Consensus 108 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 187 (362)
.+|. +. ++|++|++++|.+++. .+..+. .+++|++|++++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i----------~~~~~~---------------------------~l~~L~~L~l~~ 64 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTI----------PSHAFS---------------------------NLPNISRIYVSI 64 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEE----------CTTTTT---------------------------TCTTCCEEEEEC
T ss_pred ccCC-CC--CcccEEEEeCCcceEE----------CHHHcc---------------------------CCCCCcEEeCCC
Confidence 5665 33 3788999988888552 111333 445556666666
Q ss_pred cc-cccccCccccCcCCCcEEEeec-CcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCC---eEEcccc-
Q 037313 188 NF-LTGTIPSSIFNLSSLSNLDLSY-NNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQ---TLSLSVN- 261 (362)
Q Consensus 188 n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n- 261 (362)
|. ++...+..+.++++|++|++++ |.++ .++...+..+++|++|++++|++++ +|. +..+++|+ +|++++|
T Consensus 65 n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 65 DVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNP 141 (239)
T ss_dssp CSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCT
T ss_pred CCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCc
Confidence 64 5544445666777777777776 6776 5555444467777777777777754 454 66666776 7777777
Q ss_pred ccccccCccccCCCCCC-EEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCc-ccccCCccccCC-CCCceEEe
Q 037313 262 GFSGAIPKEIGNLTKLK-SLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNM-FYGDMPSDLANC-SYFRILIL 338 (362)
Q Consensus 262 ~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~l 338 (362)
.+++..+..|..+++|+ .|++++|.++ .+|...+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~--------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT--------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC--------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc--------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 77655555677777777 7777777765 455555555 677778887774 765556667777 77888888
Q ss_pred cccccccccccccccCCCCCeee
Q 037313 339 GFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 339 ~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
++|++++ +|.. .+++|+.|+
T Consensus 213 ~~N~l~~-l~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 213 SQTSVTA-LPSK--GLEHLKELI 232 (239)
T ss_dssp TTCCCCC-CCCT--TCTTCSEEE
T ss_pred CCCcccc-CChh--HhccCceee
Confidence 8777774 3432 445566554
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.6e-22 Score=190.71 Aligned_cols=153 Identities=24% Similarity=0.314 Sum_probs=95.4
Q ss_pred CCCCCCCCCc-----ceeee-eecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcE
Q 037313 48 RNWDTSSFVC-----NWTGI-TCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLS 121 (362)
Q Consensus 48 ~~w~~~~~~c-----~~~g~-~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 121 (362)
.+|.....+| .|.++ .|.. .+++.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 5676666677 68888 6764 589999999999985 78766 379999999999998 677 45799999
Q ss_pred EEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCc
Q 037313 122 INFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNL 201 (362)
Q Consensus 122 L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 201 (362)
|++++|.+++ +|. +.. +|++|++++|.++ + ++. .+++|+.|++++|.+++ +|. .+
T Consensus 105 L~Ls~N~l~~-----------ip~-l~~--~L~~L~Ls~N~l~---~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l 159 (571)
T 3cvr_A 105 LDACDNRLST-----------LPE-LPA--SLKHLDVDNNQLT---M-LPE---LPALLEYINADNNQLTM-LPE---LP 159 (571)
T ss_dssp EECCSSCCSC-----------CCC-CCT--TCCEEECCSSCCS---C-CCC---CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred EEccCCCCCC-----------cch-hhc--CCCEEECCCCcCC---C-CCC---cCccccEEeCCCCccCc-CCC---cC
Confidence 9999999876 333 322 5555555555554 1 222 33444444444444443 222 23
Q ss_pred CCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcc
Q 037313 202 SSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNF 239 (362)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 239 (362)
++|++|++++|.++ .+|. + . ++|++|++++|++
T Consensus 160 ~~L~~L~Ls~N~L~-~lp~-l--~-~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 160 TSLEVLSVRNNQLT-FLPE-L--P-ESLEALDVSTNLL 192 (571)
T ss_dssp TTCCEEECCSSCCS-CCCC-C--C-TTCCEEECCSSCC
T ss_pred CCcCEEECCCCCCC-Ccch-h--h-CCCCEEECcCCCC
Confidence 44444444444444 2333 1 1 4444444444444
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.9e-21 Score=166.07 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=112.2
Q ss_pred CCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCcc
Q 037313 118 SLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSS 197 (362)
Q Consensus 118 ~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 197 (362)
..++++++++.++. +|..+. ++++.|++++|.+. +..+..+..+++|++|++++|.+++..+..
T Consensus 15 ~~~~l~~~~~~l~~-----------~p~~~~--~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-----------VPSGIP--ADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCCSS-----------CCSCCC--TTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCeEEecCCCCccc-----------cCCCCC--CCCCEEEccCCCcC---ccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 46678888887754 555443 46666777777665 444445566666777777776666655556
Q ss_pred ccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCC
Q 037313 198 IFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKL 277 (362)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (362)
+..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 666666777777666666 4554444466666666666666665555555666666666666666664444456666666
Q ss_pred CEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 278 KSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
+.|++++|.++ .++...+..+++|+.|++++|.+.+.
T Consensus 158 ~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQ--------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCC--------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666666665 33333344446666666666666543
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=172.49 Aligned_cols=169 Identities=17% Similarity=0.237 Sum_probs=120.4
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++.|++++|.+++ ++. +.++++|++|++++|.+++ + +.+.++++|++|++++|.+++ ++ .+
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-----------~~-~l 125 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-----------VT-PL 125 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-----------CG-GG
T ss_pred cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-----------ch-hh
Confidence 5789999999999984 444 9999999999999999985 3 368899999999999999865 32 26
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
..+++|++|++++|.++ +..+ +..+++|++|++++|.+++.. . +..+++|++|++++|.+. .++. + ..++
T Consensus 126 ~~l~~L~~L~l~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~ 195 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQIT---NISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKIS-DISP-L-ASLP 195 (308)
T ss_dssp TTCTTCCEEECCSSCCC---CCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CCGG-G-GGCT
T ss_pred cCCCCCCEEECCCCccC---cCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccC-cChh-h-cCCC
Confidence 77777777777777765 2211 556667777777777666432 2 666677777777777666 3443 2 3566
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccc
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFS 264 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 264 (362)
+|++|++++|++++.. .+..+++|++|++++|.++
T Consensus 196 ~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 6777777777665433 2566666777777776665
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.1e-21 Score=161.00 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=126.3
Q ss_pred CCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCC
Q 037313 55 FVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELP 134 (362)
Q Consensus 55 ~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 134 (362)
..|.|.++.|.. ++++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.+++.
T Consensus 5 C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 67 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-- 67 (208)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--
T ss_pred CEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc--
Confidence 347888888864 2222 233322 23566666666666544444455666666666666665432
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcC
Q 037313 135 PIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNL 214 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 214 (362)
.+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 68 --------~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 68 --------PNGVFNKLTSLTYLNLSTNQLQ---SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------ChhhcCCCCCcCEEECCCCcCC---ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 1223455666666666666554 33333456778888888888888876666678899999999999998
Q ss_pred cccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCC
Q 037313 215 KGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTK 276 (362)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 276 (362)
+ .++...+..+++|++|++++|.+. +.+++|+.|+++.|.++|.+|.+++.++.
T Consensus 137 ~-~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 137 K-SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp S-CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred c-eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 8 566665557899999999999664 34678899999999999999988877654
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=9.1e-21 Score=180.17 Aligned_cols=186 Identities=20% Similarity=0.265 Sum_probs=117.7
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCccccc
Q 037313 94 SLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLR 173 (362)
Q Consensus 94 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 173 (362)
+|++|++++|.+++ +|..+. ++|++|++++|.++. +| ..+++|++|++++|.++ + ++.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-----------ip---~~l~~L~~L~Ls~N~l~---~-ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-----------LP---ELPASLEYLDACDNRLS---T-LPE- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-----------CC---CCCTTCCEEECCSSCCS---C-CCC-
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-----------cc---cccCCCCEEEccCCCCC---C-cch-
Confidence 89999999999986 777663 789999999999864 45 34567777777777665 2 333
Q ss_pred ccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCC
Q 037313 174 RFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHL 253 (362)
Q Consensus 174 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (362)
+.. +|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCC
Confidence 222 66777777776665 444 4566677777766666 3554 35566666666666654 444 43 666
Q ss_pred CeEEccccccccccCccccCCCCC-------CEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCcc
Q 037313 254 QTLSLSVNGFSGAIPKEIGNLTKL-------KSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD 326 (362)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 326 (362)
++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..++. +++|+.|++++|.+++.+|..
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--------~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT--------HIPENILS-LDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC--------CCCGGGGG-SCTTEEEECCSSSCCHHHHHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce--------ecCHHHhc-CCCCCEEEeeCCcCCCcCHHH
Confidence 66666666666 4454 432 45 66666666655 45555544 466666666666666555555
Q ss_pred ccC
Q 037313 327 LAN 329 (362)
Q Consensus 327 ~~~ 329 (362)
+..
T Consensus 250 l~~ 252 (571)
T 3cvr_A 250 LSQ 252 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.7e-23 Score=199.79 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=96.6
Q ss_pred ccccccccCCCcEEecCCcccccccC-ccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEccc-----------C
Q 037313 170 IKLRRFFWHEKKRVMAKNNFLTGTIP-SSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDE-----------N 237 (362)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-----------n 237 (362)
++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 34444556667777777666543322 223455556666555 2232222223333455555555552 2
Q ss_pred cccccC-CccccCCCCCCeEEccccccccccCccccC-CCCCCEEeCc----CCcccCc---------------------
Q 037313 238 NFGRRI-PSTLSRCKHLQTLSLSVNGFSGAIPKEIGN-LTKLKSLYLS----QNSLQGI--------------------- 290 (362)
Q Consensus 238 ~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~--------------------- 290 (362)
.++... +.....+++|++|+++.|.+++..+..++. +++|+.|+++ .|.+++.
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 332211 111223445555555444444433333332 4444444443 2233321
Q ss_pred ---ccccccccChhhhcCcCCCcEEeccCCcccc-cCCccccCCCCCceEEecccccccc-cccccccCCCCCeeeC
Q 037313 291 ---VNRLSAELPANFYNNIPFLEELYLSKNMFYG-DMPSDLANCSYFRILILGFNDFSGA-IPKEIGNMTKLENLDL 362 (362)
Q Consensus 291 ---~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 362 (362)
...+.+.....+...+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 0001122233333445778888888887765 3445556778888888888887654 3444556778877764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.2e-20 Score=170.16 Aligned_cols=242 Identities=17% Similarity=0.149 Sum_probs=120.5
Q ss_pred cceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCcc
Q 037313 57 CNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPI 136 (362)
Q Consensus 57 c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 136 (362)
|.|..|.|.. ++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|++++|.+.+.
T Consensus 9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~---- 69 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---- 69 (350)
T ss_dssp EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE----
T ss_pred eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc----
Confidence 6676677753 3333 344433 23555556655555533333455555566666655555443
Q ss_pred ccccccCCc-ccCCCCCCCC-CCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecC-c
Q 037313 137 FFFYLKVPP-TVGALPRIPC-PPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYN-N 213 (362)
Q Consensus 137 ~~~~~~~~~-~~~~l~~L~~-l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~ 213 (362)
+|. .+.+++++.+ +.+..|.+. ...+..+..+++|++|++++|.++...+..+....++..+++.++ .
T Consensus 70 ------i~~~~f~~L~~l~~~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 70 ------IEADVFSNLPKLHEIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp ------ECTTSBCSCTTCCEEEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred ------cChhHhhcchhhhhhhcccCCccc---ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccc
Confidence 221 2344444332 223334443 222334455566666666666665444444445555566666543 3
Q ss_pred CcccCchHHhhCC-CCCcEEEcccCcccccCCccccCCCCCCeEEccc-cccccccC-ccccCCCCCCEEeCcCCcccCc
Q 037313 214 LKGELPANICNNL-PFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV-NGFSGAIP-KEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 214 l~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
+. .++...+..+ ..+++|++++|+++.. +.......+|+++++++ |.++ .+| ..|..+++|+.|++++|+++
T Consensus 141 i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-- 215 (350)
T 4ay9_X 141 IH-TIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-- 215 (350)
T ss_dssp CC-EECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC--
T ss_pred cc-cccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC--
Confidence 33 4444333233 2456666666666432 33333345566666654 3344 333 34566666666666666665
Q ss_pred ccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccc
Q 037313 291 VNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFN 341 (362)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 341 (362)
.+|...+ .+|+.|...++.--..+| .+..+++|+.+++.++
T Consensus 216 ------~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 ------SLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ------CCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ------ccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4444332 345555554443323444 3556666666666543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.3e-20 Score=154.80 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=92.3
Q ss_pred CCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEE
Q 037313 178 HEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLS 257 (362)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 257 (362)
+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34556666666655444444556666666666666665 44444444556666666666666544444455666666666
Q ss_pred ccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEE
Q 037313 258 LSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILI 337 (362)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 337 (362)
+++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.+ .+++|++|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~ 171 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS 171 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccc--------eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence 6666666444444556666666666666554 2333333444566666666665442 334566666
Q ss_pred ecccccccccccccccCC
Q 037313 338 LGFNDFSGAIPKEIGNMT 355 (362)
Q Consensus 338 l~~n~l~~~~~~~~~~l~ 355 (362)
++.|+++|.+|+.++.++
T Consensus 172 ~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 172 EWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHCTTTBBCTTSSBC
T ss_pred HHHHhCCceeeccCcccc
Confidence 666666666666555544
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=6.6e-20 Score=165.39 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=178.3
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCc-ccCCCCCCCCCCCCCccccccCCcccc-c
Q 037313 96 QTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPP-TVGALPRIPCPPQDTLWLRQKKKAIKL-R 173 (362)
Q Consensus 96 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~-~ 173 (362)
++++.++++++ .+|..+ .+++++|++++|+++. +|. .+.++++|++|++++|.+. +.++. .
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~Ls~N~i~---~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVL---EVIEADV 74 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSE-----------ECTTSSTTCTTCCEEEEECCTTC---CEECTTS
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCC-----------cCHHHHcCCCCCCEEECcCCCCC---CccChhH
Confidence 67888888888 678766 3689999999999976 665 5899999999999999876 44443 4
Q ss_pred ccccCCCcE-EecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEccc-CcccccCCccccCC-
Q 037313 174 RFFWHEKKR-VMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDE-NNFGRRIPSTLSRC- 250 (362)
Q Consensus 174 ~~~~~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l- 250 (362)
+..++++.+ +.+..|.++...+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 566777665 566778898877888999999999999999998 56654444666788888876 45655555556665
Q ss_pred CCCCeEEccccccccccCccccCCCCCCEEeCcC-CcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccC
Q 037313 251 KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ-NSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLAN 329 (362)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 329 (362)
..+++|++++|.++ .++.......+++.+++.+ |.++ .+|...+..+++|++||+++|+++...+..
T Consensus 154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~--------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE--------ELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC--------CCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc--------CCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 46899999999999 4555444567899999986 5555 788888888899999999999998443333
Q ss_pred CCCCceEEecccccccccccccccCCCCCeeeC
Q 037313 330 CSYFRILILGFNDFSGAIPKEIGNMTKLENLDL 362 (362)
Q Consensus 330 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 362 (362)
+.+|+.|.+.++.-...+| .+.++++|+.+++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 4456666655553333666 4778888888764
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.5e-18 Score=146.78 Aligned_cols=163 Identities=22% Similarity=0.187 Sum_probs=101.7
Q ss_pred CCCCCCCCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCC
Q 037313 48 RNWDTSSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNN 127 (362)
Q Consensus 48 ~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 127 (362)
..|..+...|.|.++.|.. ++++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 4555667889999888864 3343 5666443 78999999999999888888889999999999988
Q ss_pred CCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEE
Q 037313 128 TLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNL 207 (362)
Q Consensus 128 ~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 207 (362)
.+.. +|. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 75 ~l~~-----------i~~--------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 75 QLGA-----------LPV--------------------------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCCC-----------CCT--------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCC-----------cCh--------------------------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 8743 111 112234445555555555554444445556666666
Q ss_pred EeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccc
Q 037313 208 DLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFS 264 (362)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 264 (362)
++++|.+. .+|..+. .+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 118 ~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666665 5554443 5555666666555555444444555555555555555554
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2.1e-21 Score=187.51 Aligned_cols=279 Identities=14% Similarity=0.083 Sum_probs=156.8
Q ss_pred CcEEEEEcCCCCCccc----CCccCCCCCCCCEEeCCCCccc----ccCCccccCCCCCcEEEccCCCCcccCCc-----
Q 037313 69 QRVTALNISGLNLTGT----IPSELGDLSSLQTLDLSFHWFS----GSIPASIYNMSSLLSINFTNNTLFAELPP----- 135 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~~p~----- 135 (362)
+++++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 4667777777765543 2223345566666666666654 2333344456666666666655432 110
Q ss_pred ----------------------cc-------------cccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCC-
Q 037313 136 ----------------------IF-------------FFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHE- 179 (362)
Q Consensus 136 ----------------------~~-------------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~- 179 (362)
.+ .....+|..+..+++|++|++++|.++. ......+..+++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L 320 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET--EDHCTLIQKCPNL 320 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH--HHHHHHHTTCTTC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH--HHHHHHHHhCcCC
Confidence 00 1122345566778888888888887542 111122233444
Q ss_pred -----------------------CcEEecCC-----------cccccccCcc-ccCcCCCcEEEeecCcCcccCchHHhh
Q 037313 180 -----------------------KKRVMAKN-----------NFLTGTIPSS-IFNLSSLSNLDLSYNNLKGELPANICN 224 (362)
Q Consensus 180 -----------------------L~~L~l~~-----------n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (362)
|++|++.+ +.+++..... ...+++|++|+++.+.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 55555541 2333221111 223566666666666665554445544
Q ss_pred CCCCCcEEEcc----cCccccc-----CCccccCCCCCCeEEccccc--cccccCcccc-CCCCCCEEeCcCCcccCccc
Q 037313 225 NLPFLEILLLD----ENNFGRR-----IPSTLSRCKHLQTLSLSVNG--FSGAIPKEIG-NLTKLKSLYLSQNSLQGIVN 292 (362)
Q Consensus 225 ~l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 292 (362)
.+++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-- 478 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-- 478 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH--
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH--
Confidence 46666666664 3344331 22224456777777776433 4544444443 378888888888876531
Q ss_pred ccccccChhhhcCcCCCcEEeccCCccccc-CCccccCCCCCceEEeccccccccccccc-ccCCCC
Q 037313 293 RLSAELPANFYNNIPFLEELYLSKNMFYGD-MPSDLANCSYFRILILGFNDFSGAIPKEI-GNMTKL 357 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 357 (362)
.++ .+...+++|++|++++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+
T Consensus 479 ----~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 479 ----GLM-EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp ----HHH-HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred ----HHH-HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence 222 3344568999999999998754 44555688999999999999986533333 234443
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8e-19 Score=154.04 Aligned_cols=188 Identities=26% Similarity=0.300 Sum_probs=121.6
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCccccccc
Q 037313 96 QTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRF 175 (362)
Q Consensus 96 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 175 (362)
..+.+..+.+++.. .+.++++|++|++++|.+.. ++ .+..+++|++|++++|.++ +..+ +.
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-----------~~-~~~~l~~L~~L~L~~n~l~---~~~~--l~ 87 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-----------VQ-GIQYLPNVTKLFLNGNKLT---DIKP--LA 87 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-----------CT-TGGGCTTCCEEECCSSCCC---CCGG--GT
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCccc-----------Ch-hHhcCCCCCEEEccCCccC---CCcc--cc
Confidence 33445555554322 24567888999999888754 32 3667777777777777775 2222 66
Q ss_pred ccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCe
Q 037313 176 FWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQT 255 (362)
Q Consensus 176 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 255 (362)
.+++|++|++++|.+++ + ..+..+++|++|++++|.+. .++ .+ ..+++|++|++++|++++. ..+..+++|++
T Consensus 88 ~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 67777777777777764 2 33677777777777777776 343 23 2667777777777777543 45667777777
Q ss_pred EEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 256 LSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|+++.
T Consensus 161 L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~--------l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--------LRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--------CGG--GTTCTTCSEEEEEEEEEEC
T ss_pred EEccCCccccchh--hcCCCccCEEECCCCcCCC--------Chh--hccCCCCCEEECcCCcccC
Confidence 7777777764433 6667777777777777653 222 2334677777777777653
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=146.06 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=83.0
Q ss_pred EEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEcccc
Q 037313 182 RVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVN 261 (362)
Q Consensus 182 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (362)
.+++++|.++. +|..+. +.+++|++++|.+++..+...+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555542 344332 234566666666553333333345566666666666665555555566666666666666
Q ss_pred ccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccc
Q 037313 262 GFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFN 341 (362)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 341 (362)
.+++..+..|..+++|+.|++++|.+++ ++...+..+++|+.|++++|++++..|..|..+++|+.|++++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITC--------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCC--------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCe--------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 6655444555556666666666665542 22222333455666666666665555556666666666666666
Q ss_pred ccc
Q 037313 342 DFS 344 (362)
Q Consensus 342 ~l~ 344 (362)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=146.47 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=130.8
Q ss_pred cEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccc
Q 037313 181 KRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV 260 (362)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (362)
+.++++++.++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 67888888887 4666554 68999999999998 56665556899999999999999988899999999999999999
Q ss_pred cccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecc
Q 037313 261 NGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGF 340 (362)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 340 (362)
|.++...+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|++++..+..|..+++|+.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKIN--------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCC--------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 9999655666788999999999999987 44445555668999999999999977777899999999999999
Q ss_pred ccccc
Q 037313 341 NDFSG 345 (362)
Q Consensus 341 n~l~~ 345 (362)
|.+..
T Consensus 162 N~~~c 166 (220)
T 2v9t_B 162 NPFIC 166 (220)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 99863
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.4e-18 Score=150.97 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccC
Q 037313 69 QRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVG 148 (362)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~ 148 (362)
.+++.|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ + +.+.
T Consensus 46 ~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------~-~~l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-----------L-SSLK 109 (291)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------G-GGGT
T ss_pred CcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-----------C-hhhc
Confidence 46788888888887 334 47778888888888888875433 7788888888888888754 2 2366
Q ss_pred CCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCC
Q 037313 149 ALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPF 228 (362)
Q Consensus 149 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (362)
.+++|++|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+. .+++ + ..+++
T Consensus 110 ~l~~L~~L~L~~n~i~~----~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~ 179 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISD----I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTK 179 (291)
T ss_dssp TCTTCCEEECTTSCCCC----C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-G-TTCTT
T ss_pred cCCCCCEEECCCCcCCC----C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-h-cCCCc
Confidence 66667766666666652 1 2345556666666666666543 44556666666666666665 3333 2 35566
Q ss_pred CcEEEcccCcccccCCccccCCCCCCeEEccccccc
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFS 264 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 264 (362)
|++|++++|.++. ++ .+..+++|+.|++++|.++
T Consensus 180 L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 180 LQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred cCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 6666666666543 22 2555666666666666655
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.9e-18 Score=145.30 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=126.7
Q ss_pred CCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEE
Q 037313 154 PCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILL 233 (362)
Q Consensus 154 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 233 (362)
+.++++++.++ .+|..+ .+.++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+ ..+++|++|+
T Consensus 14 ~~v~c~~~~l~----~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLT----EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCS----SCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEE
T ss_pred CEEEcCCCCcC----cCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEE
Confidence 34566666664 333333 2689999999999998777789999999999999999994444444 5899999999
Q ss_pred cccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEe
Q 037313 234 LDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELY 313 (362)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 313 (362)
+++|+++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++ .++...+..+++|+.|+
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--------TIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC--------EECHHHHhCCCCCCEEE
Confidence 9999998766666789999999999999999888899999999999999999987 45555556678999999
Q ss_pred ccCCcccc
Q 037313 314 LSKNMFYG 321 (362)
Q Consensus 314 L~~n~i~~ 321 (362)
+++|.+..
T Consensus 159 L~~N~~~c 166 (220)
T 2v9t_B 159 LAQNPFIC 166 (220)
T ss_dssp CCSSCEEC
T ss_pred eCCCCcCC
Confidence 99999864
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2e-18 Score=165.76 Aligned_cols=171 Identities=16% Similarity=0.201 Sum_probs=119.8
Q ss_pred CCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCccc
Q 037313 68 SQRVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTV 147 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~ 147 (362)
..+++.|++++|.+. .++ .+..+++|++|+|++|.+++..| +..+++|++|++++|.+.+ +| .+
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----------l~-~l 105 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-----------LS-SL 105 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-----------CT-TS
T ss_pred CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-----------Ch-hh
Confidence 456888888888887 344 57888888888888888875443 7888888888888888754 22 56
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCC
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLP 227 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 227 (362)
..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+ +++ + ..++
T Consensus 106 ~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l-~~l~ 175 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD----I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-L-AGLT 175 (605)
T ss_dssp TTCTTCCEEECTTSCCCC----C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-G-TTCT
T ss_pred ccCCCCCEEEecCCCCCC----C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-h-ccCC
Confidence 777777777777777752 1 3356667777777777777653 556677777777777777763 333 3 3667
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccccccc
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGA 266 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 266 (362)
+|++|++++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 176 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 777777777776543 2466677777777777777643
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.2e-18 Score=165.50 Aligned_cols=190 Identities=18% Similarity=0.247 Sum_probs=146.2
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCC
Q 037313 71 VTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGAL 150 (362)
Q Consensus 71 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l 150 (362)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-----------~~~-l~~l 86 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-----------IKP-LTNL 86 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-----------CGG-GGGC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-----------Chh-hccC
Confidence 4445566666664433 5678899999999999873 44 68899999999999999876 333 7888
Q ss_pred CCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCc
Q 037313 151 PRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLE 230 (362)
Q Consensus 151 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (362)
++|+.|++++|.+.. + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+ ..+++|+
T Consensus 87 ~~L~~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l-~~l~~L~ 156 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD----L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVL-SRLTKLD 156 (605)
T ss_dssp TTCCEEECCSSCCCC----C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGG-GSCTTCS
T ss_pred CCCCEEECcCCCCCC----C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhh-cccCCCC
Confidence 899999999988863 2 2567788888888888888752 457788888888888888873 4 333 3788888
Q ss_pred EEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCc
Q 037313 231 ILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
.|++++|.+++..| +..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+.+.
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 88888888876555 7788888888888888874 3 4577888888888888887643
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=157.08 Aligned_cols=152 Identities=24% Similarity=0.197 Sum_probs=77.4
Q ss_pred cEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCccccccc-ccCCCcEEecCCcccccccCccc
Q 037313 120 LSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRF-FWHEKKRVMAKNNFLTGTIPSSI 198 (362)
Q Consensus 120 ~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l 198 (362)
++++++++.++. +|..+. +.++.|++++|.++ ...+..+. .+++|++|++++|.+++..+..+
T Consensus 21 ~~l~c~~~~l~~-----------iP~~~~--~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLPN-----------VPQSLP--SYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TEEECCSSCCSS-----------CCSSCC--TTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CEEEeCCCCcCc-----------cCccCC--CCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 577777777654 444332 23555555555554 22222233 45555555555555554444455
Q ss_pred cCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccc---cCCC
Q 037313 199 FNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEI---GNLT 275 (362)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~ 275 (362)
.++++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..++
T Consensus 85 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163 (361)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred cCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence 55555555555555555 3343333355555555555555554445555555555555555555553222222 3355
Q ss_pred CCCEEeCcCCccc
Q 037313 276 KLKSLYLSQNSLQ 288 (362)
Q Consensus 276 ~L~~L~L~~n~l~ 288 (362)
+|+.|++++|.++
T Consensus 164 ~L~~L~L~~N~l~ 176 (361)
T 2xot_A 164 KLMLLDLSSNKLK 176 (361)
T ss_dssp TCCEEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 5555555555554
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=3.7e-20 Score=181.91 Aligned_cols=221 Identities=14% Similarity=0.087 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHhcCCCCccchhcCCCCC-CCCCcceeeeeecCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEeCC--
Q 037313 25 TTDQQALLALKGHVTDDLAKKLARNWDT-SSFVCNWTGITCDVRSQRVTALNISGLNLTGTIPSELGDLSSLQTLDLS-- 101 (362)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~-~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-- 101 (362)
..+++++..+...+........ ..|.. ....+.|.++.+.. .+++.|++.++.+.. .+..+.....|+.+.|.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKK-QQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCccc-CCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCc
Confidence 4566788888877643333322 44533 33456788877764 789999999999874 44444333334443333
Q ss_pred ---CCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccC
Q 037313 102 ---FHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWH 178 (362)
Q Consensus 102 ---~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 178 (362)
.|.+. ..+..+..+++|++|++++|.+.. +|..+..+++|++|++++|.++ .+|..+..++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-----------l~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~ 270 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-----------ISANIFKYDFLTRLYLNGNSLT----ELPAEIKNLS 270 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSC-----------CCGGGGGCCSCSCCBCTTSCCS----CCCGGGGGGT
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCC-----------CChhhcCCCCCCEEEeeCCcCc----ccChhhhCCC
Confidence 33333 456778889999999999998863 5666666777777777776663 3444455556
Q ss_pred CCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCC-CCCeEE
Q 037313 179 EKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCK-HLQTLS 257 (362)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~ 257 (362)
+|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++|++++|.+++.+|..+.... .+..++
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT-SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh-cCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 6666666666655 45555555666666666665554 5554432 555555555555555554444443221 112244
Q ss_pred ccccccccccC
Q 037313 258 LSVNGFSGAIP 268 (362)
Q Consensus 258 l~~n~l~~~~~ 268 (362)
+++|.+++.+|
T Consensus 348 l~~N~l~~~~p 358 (727)
T 4b8c_D 348 LRDNRPEIPLP 358 (727)
T ss_dssp HHHCCCCCCCC
T ss_pred hccCcccCcCc
Confidence 55555554444
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.2e-18 Score=142.38 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=128.4
Q ss_pred ccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCC
Q 037313 174 RFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHL 253 (362)
Q Consensus 174 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (362)
...+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 356788999999999988 455 6889999999999999776 443 443 78999999999999988788889999999
Q ss_pred CeEEccccccccccCccccCCCCCCEEeCcCCc-ccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCC
Q 037313 254 QTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNS-LQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSY 332 (362)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 332 (362)
++|++++|.+++..+..++.+++|+.|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~ 182 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------DIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPK 182 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------CCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSS
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------ccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCC
Confidence 999999999998788889999999999999997 65 333 23446899999999999975 44 7889999
Q ss_pred CceEEeccccccc
Q 037313 333 FRILILGFNDFSG 345 (362)
Q Consensus 333 L~~L~l~~n~l~~ 345 (362)
|+.|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999999864
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=8.4e-18 Score=141.32 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=95.4
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 73 ALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIP-ASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 73 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
.++++++.++ .+|..+. +.+++|++++|.+++..+ ..+.++++|++|++++|.+++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-------------------- 71 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-------------------- 71 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--------------------
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--------------------
Confidence 5677777777 5676553 356788888888876544 346677777777777766633
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcE
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEI 231 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 231 (362)
..+..+..+++|++|++++|.++ .+++..+..+++|++
T Consensus 72 -----------------------------------------i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 72 -----------------------------------------IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKT 109 (220)
T ss_dssp -----------------------------------------ECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCE
T ss_pred -----------------------------------------ECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCE
Confidence 22334455555666666666665 344443345666666
Q ss_pred EEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 232 LLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 232 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666666666555666666666666666666666555666666666666666666654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.7e-18 Score=141.04 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCc
Q 037313 90 GDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKA 169 (362)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 169 (362)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-------------------------------------- 80 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-------------------------------------- 80 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--------------------------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--------------------------------------
Confidence 44556666666666655 344 45556666666666554321
Q ss_pred ccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccC
Q 037313 170 IKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSR 249 (362)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 249 (362)
...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|...+.++ .+..
T Consensus 81 -~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~l~~ 157 (197)
T 4ezg_A 81 -YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM-PLKT 157 (197)
T ss_dssp -CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG-GGGG
T ss_pred -chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH-hhcC
Confidence 01223344455555555555544555556666666666666666544444343 55666666666665212333 3555
Q ss_pred CCCCCeEEccccccccccCccccCCCCCCEEeCcCCcc
Q 037313 250 CKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSL 287 (362)
Q Consensus 250 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (362)
+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus 158 l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 5566666666665552 22 444555555555555554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.3e-18 Score=154.87 Aligned_cols=175 Identities=21% Similarity=0.193 Sum_probs=120.3
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCcccc-CCCCCcEEEccCCCCcccCCccccccccCCcccCCCC
Q 037313 73 ALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIY-NMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALP 151 (362)
Q Consensus 73 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~ 151 (362)
.+++++++++ .+|..+. +.+++|+|++|++++..+..+. ++++|++|++++|.+++. .+..+..++
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----------~~~~~~~l~ 88 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----------SSEAFVPVP 88 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE----------CTTTTTTCT
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc----------ChhhccCCC
Confidence 4566667766 4666543 3577888888888766666666 788888888888887653 334567777
Q ss_pred CCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHh---hCCCC
Q 037313 152 RIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANIC---NNLPF 228 (362)
Q Consensus 152 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~ 228 (362)
+|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..++ ..+++
T Consensus 89 ~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 89 NLRYLDLSSNHLH---TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPK 164 (361)
T ss_dssp TCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTT
T ss_pred CCCEEECCCCcCC---cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCc
Confidence 7777777777765 333445666777788888888777766777777788888888888777 5666554 35677
Q ss_pred CcEEEcccCcccccCCccccCCCC--CCeEEccccccc
Q 037313 229 LEILLLDENNFGRRIPSTLSRCKH--LQTLSLSVNGFS 264 (362)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~ 264 (362)
|++|++++|+++...+..+..++. ++.|++++|.+.
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 777777777776544455555655 367777777764
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.6e-17 Score=140.56 Aligned_cols=134 Identities=27% Similarity=0.388 Sum_probs=81.9
Q ss_pred CCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEE
Q 037313 178 HEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLS 257 (362)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 257 (362)
++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 56666666666666655666666666666666666665 55555444566666666666666555555556666666666
Q ss_pred ccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 258 LSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
+++|.++ .+|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLK--------SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCC--------ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6666666 55656666666666666666655 3333444444666666666666553
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=3.3e-20 Score=179.12 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=34.8
Q ss_pred cCCCcEEeccCCcccccCCccc-cCCCCCceEEeccccccccccc-ccccCCCCCeeeC
Q 037313 306 IPFLEELYLSKNMFYGDMPSDL-ANCSYFRILILGFNDFSGAIPK-EIGNMTKLENLDL 362 (362)
Q Consensus 306 ~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l 362 (362)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 4667777777777654433333 5567777777777777543332 3445667776653
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.1e-19 Score=173.34 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=150.2
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcc-------------cccccCccccCcCCCcEEE-eecCc
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNF-------------LTGTIPSSIFNLSSLSNLD-LSYNN 213 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~ 213 (362)
...++|+.|++++|.+ ..+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhH----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 4566666777777666 3456666667777777765553 4455667777888888888 55554
Q ss_pred CcccCch------HHh-hCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCc
Q 037313 214 LKGELPA------NIC-NNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNS 286 (362)
Q Consensus 214 l~~~~~~------~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (362)
+. .++. .+. -....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.
T Consensus 422 ~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 422 LD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred cc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 33 2221 010 012369999999999976 676 999999999999999999 889999999999999999999
Q ss_pred ccCcccccccccChhhhcCcCCCcEEeccCCcccccC-CccccCCCCCceEEeccccccccccc---ccccCCCCCeeeC
Q 037313 287 LQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDM-PSDLANCSYFRILILGFNDFSGAIPK---EIGNMTKLENLDL 362 (362)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l 362 (362)
+++ +| . +..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 498 l~~--------lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LEN--------VD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCC--------CG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC--------Cc-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 873 45 3 445699999999999999776 99999999999999999999976443 2445899999875
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=5.5e-20 Score=177.62 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCCCCeEEccccccccccCcccc-CCCCCCEEeCc--C----CcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 250 CKHLQTLSLSVNGFSGAIPKEIG-NLTKLKSLYLS--Q----NSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 250 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
+++|++|.++.|.+++..+..+. .+++|+.|+++ + +.+++.. ....++ .+...+++|+.|++++ .+++.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~~-~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP--LDIGFG-AIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC--THHHHH-HHHHHCTTCCEEECCS-SCCHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc--hhhHHH-HHHhhCCCccEEeecC-cccHH
Confidence 45566665555555544444443 36677777776 2 2332100 000111 1233447788888866 55544
Q ss_pred CCccccC-CCCCceEEeccccccccccccc-ccCCCCCeeeC
Q 037313 323 MPSDLAN-CSYFRILILGFNDFSGAIPKEI-GNMTKLENLDL 362 (362)
Q Consensus 323 ~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 362 (362)
.+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 4444444 7889999999998876555555 67888888874
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.7e-20 Score=176.65 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccc---cccccCCcccCCCCCCCCCC-CCCccccc
Q 037313 90 GDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIF---FFYLKVPPTVGALPRIPCPP-QDTLWLRQ 165 (362)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---~~~~~~~~~~~~l~~L~~l~-l~~~~~~~ 165 (362)
..+++|+.|++++|+++ .+|+.++++++|+.|++++|.....+|... ......|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788888889888886 788888888888888886654211111100 11122444455555555554 3333221
Q ss_pred cCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCc
Q 037313 166 KKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPS 245 (362)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 245 (362)
.|+.+.+.+|.++.. + ...|+.|++++|.++ .+|. + ..+++|++|++++|.++ .+|.
T Consensus 424 -------------~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 424 -------------DLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp -------------HHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCG
T ss_pred -------------hhhhhhhhccccccc-C-----ccCceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccch
Confidence 112222222222211 0 123666666666666 3554 3 35666666666666665 5566
Q ss_pred cccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCc
Q 037313 246 TLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPS 325 (362)
Q Consensus 246 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 325 (362)
.++.+++|++|++++|.+++ +| .++.+++|+.|++++|.+++.. .|..+. .+++|+.|++++|++++..|.
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~------~p~~l~-~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA------AIQPLV-SCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS------TTGGGG-GCTTCCEEECTTSGGGGSSSC
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC------CcHHHh-cCCCCCEEEecCCcCCCCccH
Confidence 66666666666666666664 44 5666666666666666665210 033332 336666666666666644332
Q ss_pred c---ccCCCCCceEE
Q 037313 326 D---LANCSYFRILI 337 (362)
Q Consensus 326 ~---~~~l~~L~~L~ 337 (362)
. +..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 1 23456666664
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.1e-18 Score=146.64 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=114.2
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.++++++.+++. + .+..+++|++|++++|+++ .++ .+..+++|++|++++|.+++ ++. +..
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-----------~~~-l~~ 83 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-----------LSP-LKD 83 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-----------CGG-GTT
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-----------Chh-hcc
Confidence 455566677766632 2 4667777888888877776 344 57777788888888777765 333 666
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
+++|++|++++|.++. ++.. .. ++|++|++++|.+++. ..+..+++|++|++++|.++ .++ .+ ..+++|
T Consensus 84 l~~L~~L~L~~N~l~~----l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~l-~~l~~L 152 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKN----LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-ML-GFLSKL 152 (263)
T ss_dssp CSSCCEEECCSSCCSC----CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-GG-GGCTTC
T ss_pred CCCCCEEECCCCccCC----cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-HH-ccCCCC
Confidence 7777777777776652 1211 12 7778888888877753 35777888888888888877 444 33 367788
Q ss_pred cEEEcccCcccccCCccccCCCCCCeEEccccccccc
Q 037313 230 EILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGA 266 (362)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 266 (362)
++|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888888877655 5577778888888888877644
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=144.03 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred ccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCe
Q 037313 176 FWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQT 255 (362)
Q Consensus 176 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 255 (362)
.+++|+.|++++|.++. ++ .+..+++|++|++++|.+. .+++ + ..+++|++|++++|++++ ++. +.. ++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l-~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-L-KDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-h-ccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence 34444555555554442 22 3444555555555555554 3333 2 245555555555555433 221 111 45555
Q ss_pred EEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCce
Q 037313 256 LSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRI 335 (362)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 335 (362)
|++++|.+++ + ..+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++. ..+..+++|+.
T Consensus 111 L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~--------~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 111 LFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS--------IV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp EECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB--------CG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred EEccCCccCC-C-hhhcCcccccEEECCCCcCCC--------Ch--HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 5555555543 1 234455555555555555442 11 112234555555555555433 34445555555
Q ss_pred EEecccccc
Q 037313 336 LILGFNDFS 344 (362)
Q Consensus 336 L~l~~n~l~ 344 (362)
|++++|+++
T Consensus 177 L~l~~N~~~ 185 (263)
T 1xeu_A 177 IDLTGQKCV 185 (263)
T ss_dssp EEEEEEEEE
T ss_pred EeCCCCccc
Confidence 555555554
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.9e-16 Score=130.13 Aligned_cols=133 Identities=25% Similarity=0.268 Sum_probs=97.9
Q ss_pred cEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccc
Q 037313 181 KRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV 260 (362)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (362)
+.++++++.++ .+|..+.. ++++|++++|.+.+..+...+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888875 56665543 7888888888887333333345788888888888888877788888888888888888
Q ss_pred cccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCC
Q 037313 261 NGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMP 324 (362)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 324 (362)
|.+++..+..+..+++|+.|++++|.+++ ++...+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISC--------VMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCe--------eCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888888888888763 222333445778888888888775543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.3e-16 Score=128.24 Aligned_cols=131 Identities=21% Similarity=0.134 Sum_probs=69.4
Q ss_pred CCcEEEeecCcCc-ccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEe
Q 037313 203 SLSNLDLSYNNLK-GELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLY 281 (362)
Q Consensus 203 ~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (362)
+|++|++++|.+. +.+|..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4444444444443 3333322 1344444455544444333 3455556666666666666544555555566666666
Q ss_pred CcCCcccCcccccccccCh-hhhcCcCCCcEEeccCCcccccCC---ccccCCCCCceEEecccccc
Q 037313 282 LSQNSLQGIVNRLSAELPA-NFYNNIPFLEELYLSKNMFYGDMP---SDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 282 L~~n~l~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~ 344 (362)
+++|.+++ ++. ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~--------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKD--------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCS--------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCc--------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666553 111 222334666666776666664333 35666677777777776665
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.8e-16 Score=124.83 Aligned_cols=91 Identities=24% Similarity=0.198 Sum_probs=51.2
Q ss_pred cccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCccccc-CCccccCCCCCCeEEccccccccccC---cccc
Q 037313 197 SIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRR-IPSTLSRCKHLQTLSLSVNGFSGAIP---KEIG 272 (362)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~ 272 (362)
.+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+.
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred hhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 34455555666666665553333332 2456666666666665442 12455666666666666666664333 3556
Q ss_pred CCCCCCEEeCcCCccc
Q 037313 273 NLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 273 ~l~~L~~L~L~~n~l~ 288 (362)
.+++|+.|++++|.+.
T Consensus 145 ~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 145 LLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCSSCCEETTEETTSC
T ss_pred hCccCcEecCCCCChh
Confidence 6667777777666554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=4.3e-16 Score=122.48 Aligned_cols=126 Identities=23% Similarity=0.215 Sum_probs=85.9
Q ss_pred CCCcEEEcccCccc-ccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcC
Q 037313 227 PFLEILLLDENNFG-RRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNN 305 (362)
Q Consensus 227 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 305 (362)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|+.|++++|.+++ .+| ..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~-------~~~-~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG-------GLE-VLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS-------CTH-HHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc-------hHH-HHhhh
Confidence 55777777777765 46666667777777777777777644 566677777777777777653 133 23333
Q ss_pred cCCCcEEeccCCccccc-CCccccCCCCCceEEecccccccccc---cccccCCCCCeeeC
Q 037313 306 IPFLEELYLSKNMFYGD-MPSDLANCSYFRILILGFNDFSGAIP---KEIGNMTKLENLDL 362 (362)
Q Consensus 306 ~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 362 (362)
+++|++|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 47778888888777652 34667777888888888888775544 46777788887764
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=4.7e-17 Score=159.88 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=120.6
Q ss_pred cCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccc
Q 037313 84 TIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWL 163 (362)
Q Consensus 84 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 163 (362)
..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ . +|..++++++|++|++++|.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~----------lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-E----------LPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-C----------CCGGGGGGTTCCEEECTTSCC
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-c----------cChhhhCCCCCCEEeCcCCcC
Confidence 34678899999999999999998 78888889999999999999997 3 888899999999999999998
Q ss_pred cccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccC
Q 037313 164 RQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRI 243 (362)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 243 (362)
+ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.+|..+.........+++++|.+++.+
T Consensus 283 ~----~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 283 T----SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp S----SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred C----ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 5 55788899999999999999997 788889999999999999999997777665421122234678889888777
Q ss_pred CccccCCCCCCeEEcccc--------ccccccCccccCCCCCCEEeCcCCccc
Q 037313 244 PSTLSRCKHLQTLSLSVN--------GFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
|.. |+.|+++.| .+.+..+..+..+..++...++.|.+.
T Consensus 358 p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 358 PHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC-----------------------------------------------CCC
T ss_pred ccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 754 455666666 233333334444555566666666553
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=6.6e-16 Score=137.95 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=89.7
Q ss_pred CCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCc-EEeccCCcccccCCcccc
Q 037313 250 CKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLE-ELYLSKNMFYGDMPSDLA 328 (362)
Q Consensus 250 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~ 328 (362)
+++|+++++++|.++.....+|..+.+|+.+++.+| ++ .++...|..+++|+ .+++.+ .++..-+.+|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--------eehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 789999999999998666778999999999999997 55 67888888889999 999988 67656678999
Q ss_pred CCCCCceEEecccccccccccccccCCCCCeee
Q 037313 329 NCSYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 329 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
.+++|+.+++++|.++...+..|.++++|+.+.
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 999999999999999977777999999999875
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.9e-15 Score=124.13 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=106.2
Q ss_pred CCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCc-cccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEE
Q 037313 154 PCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPS-SIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEIL 232 (362)
Q Consensus 154 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (362)
+.++++++.++ .+|..+. ..+++|++++|.+++..+. .+..+++|++|++++|.+++..|..+ ..+++|++|
T Consensus 11 ~~l~~s~~~l~----~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK----EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS----SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred CEEEcCCCCcC----cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEE
Confidence 56778888774 3443332 3889999999999866554 47899999999999999985445444 488999999
Q ss_pred EcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 233 LLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999988888888999999999999999998888899999999999999998864
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.6e-15 Score=121.66 Aligned_cols=130 Identities=25% Similarity=0.386 Sum_probs=76.3
Q ss_pred cEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccc
Q 037313 181 KRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV 260 (362)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (362)
+.++++++.++. +|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~-~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSS-CCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCcc-CCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 556666666552 333222 46666666666666 44444444566666666666666554445556666666666666
Q ss_pred cccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 261 NGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
|.+++..+..+..+++|+.|++++|.++ .++...+..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce--------EeCHHHhcCCcccCEEEecCCCeecc
Confidence 6666544445566666666666666654 34444444446666666666666543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6e-16 Score=121.65 Aligned_cols=128 Identities=20% Similarity=0.135 Sum_probs=66.5
Q ss_pred CCCcEEEeecCcCc-ccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEE
Q 037313 202 SSLSNLDLSYNNLK-GELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSL 280 (362)
Q Consensus 202 ~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (362)
++|+.|++++|.+. +.+|..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34444444444444 3343322 2445555555555554433 345555666666666666664455555556666666
Q ss_pred eCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCC---ccccCCCCCceEEec
Q 037313 281 YLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMP---SDLANCSYFRILILG 339 (362)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~ 339 (362)
++++|.+++. ..+. .+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~------~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDL------STIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSH------HHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCCh------HHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665421 0111 22334666666666666664433 356666666666654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=122.71 Aligned_cols=128 Identities=25% Similarity=0.365 Sum_probs=104.9
Q ss_pred cEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccc
Q 037313 181 KRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV 260 (362)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (362)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67888888887 5665543 58999999999988 787554 4889999999999999887777888899999999999
Q ss_pred cccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 261 NGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
|.+++..+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS--------VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC--------BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC--------eeChhhhhcCccccEEEeCCCCeec
Confidence 9998777778888999999999999887 5666666667889999999988764
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=119.54 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=99.0
Q ss_pred CCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEE
Q 037313 154 PCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILL 233 (362)
Q Consensus 154 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 233 (362)
+.++++++.++ .+|..+ .+.+++|++++|.++ .+|..+.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 13 ~~l~~~~~~l~----~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK----VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS----SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC----cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEE
Confidence 45666777664 333322 357888999988887 66788888889999999999888 56655555888899999
Q ss_pred cccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCccc
Q 037313 234 LDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
+++|++++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999888777778888889999999999888555556888888999999988765
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=7.6e-15 Score=131.05 Aligned_cols=246 Identities=13% Similarity=0.037 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCCCCc--c-----------------cCC-ccCCC--------CCCCCEEeCCCCcccccCCccccCCCCC
Q 037313 68 SQRVTALNISGLNLT--G-----------------TIP-SELGD--------LSSLQTLDLSFHWFSGSIPASIYNMSSL 119 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~--~-----------------~~~-~~l~~--------l~~L~~L~l~~n~~~~~~~~~l~~l~~L 119 (362)
..+++.|||++|.+. . .+| .+|.+ +++|++++|.+ .++..-+.+|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 357888999888876 1 112 24455 67777777766 5654444556677777
Q ss_pred cEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCcccccc-CCcccccccccCCCc-EEecCCcccccccCcc
Q 037313 120 LSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQK-KKAIKLRRFFWHEKK-RVMAKNNFLTGTIPSS 197 (362)
Q Consensus 120 ~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~ 197 (362)
+++++.+|.+... .+..+..+.++..+.......... .......+.....|+ .+.+.... .++..
T Consensus 127 ~~l~l~~n~i~~i----------~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~ 193 (329)
T 3sb4_A 127 KICQIRKKTAPNL----------LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDE 193 (329)
T ss_dssp CEEEBCCSSCCEE----------CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHH
T ss_pred ceEEcCCCCcccc----------chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHH
Confidence 7777777665432 122333343443333332111000 000011122222333 22222111 11111
Q ss_pred c----cCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccC
Q 037313 198 I----FNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGN 273 (362)
Q Consensus 198 l----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 273 (362)
+ ....+++.+.+.++-.. .-...+...+++|+++++++|+++......|..+++|+++++.+| ++...+.+|..
T Consensus 194 ~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp HHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence 1 12345566666554222 222233334789999999999998777788999999999999998 77666788999
Q ss_pred CCCCC-EEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEe
Q 037313 274 LTKLK-SLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILIL 338 (362)
Q Consensus 274 l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 338 (362)
+++|+ .+++.+ .++ .++...|..+++|+.+++++|+++..-+.+|.++++|+.++.
T Consensus 272 ~~~L~~~l~l~~-~l~--------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVT--------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCC--------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cce--------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999 999998 555 677777888899999999999998777789999999998864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1e-14 Score=118.12 Aligned_cols=129 Identities=24% Similarity=0.306 Sum_probs=61.8
Q ss_pred cEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcC
Q 037313 205 SNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQ 284 (362)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (362)
+.++++++.+. .+|..+ .+++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44455555544 344322 23455555555555444344445555555555555555533333444555555555555
Q ss_pred CcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccc
Q 037313 285 NSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSG 345 (362)
Q Consensus 285 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 345 (362)
|.++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQ--------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcc--------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5544 2333333333555555555555543333334455555555555555543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=9.9e-15 Score=118.06 Aligned_cols=135 Identities=18% Similarity=0.154 Sum_probs=93.6
Q ss_pred ccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCC
Q 037313 198 IFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKL 277 (362)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (362)
+.++++|++|++++|.+. .++. +....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455667777777777776 4543 332344788888888877654 467778888888888888875444445778888
Q ss_pred CEEeCcCCcccCcccccccccCh-hhhcCcCCCcEEeccCCcccccCCcc----ccCCCCCceEEeccccccc
Q 037313 278 KSLYLSQNSLQGIVNRLSAELPA-NFYNNIPFLEELYLSKNMFYGDMPSD----LANCSYFRILILGFNDFSG 345 (362)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~ 345 (362)
+.|++++|.++ .+|. ..+..+++|+.|++++|.++ .+|.. +..+++|++|++++|....
T Consensus 91 ~~L~L~~N~i~--------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV--------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC--------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC--------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888775 3333 12334577888888888886 44553 7788888888888887653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.7e-17 Score=133.17 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=94.8
Q ss_pred cccCCCcEEecCCcccccccCc------cccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCcccc
Q 037313 175 FFWHEKKRVMAKNNFLTGTIPS------SIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLS 248 (362)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 248 (362)
.....++.++++.+.+++..|. .+..+++|++|++++|.+. .+| .+. .+++|++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhh
Confidence 3445666667777777666555 6667777777777777776 355 333 6677777777777765 4555555
Q ss_pred CCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccCh-hhhcCcCCCcEEeccCCcccccCCcc-
Q 037313 249 RCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPA-NFYNNIPFLEELYLSKNMFYGDMPSD- 326 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~- 326 (362)
.+++|++|++++|.+++ +| .+..+++|+.|++++|.+++ ++. ..+..+++|+.|++++|.+.+..|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~--------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN--------WGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC--------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc--------hhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 56677777777777764 33 45666677777777776652 221 22333466777777777666554432
Q ss_pred ---------ccCCCCCceEEecccccc
Q 037313 327 ---------LANCSYFRILILGFNDFS 344 (362)
Q Consensus 327 ---------~~~l~~L~~L~l~~n~l~ 344 (362)
+..+++|+.|| ++.++
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred chHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55666666665 44444
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=4e-13 Score=122.73 Aligned_cols=242 Identities=11% Similarity=0.084 Sum_probs=167.6
Q ss_pred CccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccc
Q 037313 86 PSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQ 165 (362)
Q Consensus 86 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 165 (362)
..+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..- -+..+.++++|+.+++..|.++
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I----------~~~aF~~c~~L~~l~l~~n~l~- 193 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL----------KEDIFYYCYNLKKADLSKTKIT- 193 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE----------CSSTTTTCTTCCEEECTTSCCS-
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe----------hHHHhhCcccCCeeecCCCcce-
Confidence 3466664 6888888765 553444556664 688888875 33221 2345778888888888887764
Q ss_pred cCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCc
Q 037313 166 KKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPS 245 (362)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 245 (362)
.++........|+.+.+..+ ++......|.++++|+.+++..+ +. .++...|.. .+|+.+.+. +.++.....
T Consensus 194 ---~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~ 265 (401)
T 4fdw_A 194 ---KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASR 265 (401)
T ss_dssp ---EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred ---EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChh
Confidence 23333333578888888754 65556677888888999988764 54 666666645 788888884 446556677
Q ss_pred cccCCCCCCeEEccccccc-----cccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccc
Q 037313 246 TLSRCKHLQTLSLSVNGFS-----GAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 246 ~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
.|..+++|+.+.+.++.+. .....+|..+++|+.+++.++ ++ .++...|..+.+|+.+++..+ ++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~--------~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR--------ILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC--------EECTTTTTTCCSCCEEEECTT-CC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE--------EEhhhhhcCCCCccEEEECcc-cc
Confidence 7888889999988887664 344567888889999988843 44 566677777788888888655 55
Q ss_pred ccCCccccCCCCCceEEecccccccccccccccCC-CCCeee
Q 037313 321 GDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMT-KLENLD 361 (362)
Q Consensus 321 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 361 (362)
..-..+|..+ +|+.+++.+|......+..|.+++ ++..|.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 4556778888 899999888877755556676664 455543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.9e-14 Score=116.42 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=104.4
Q ss_pred CCCCCcEEEcccCcccccCCccccCC-CCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhh
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRC-KHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFY 303 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 303 (362)
..++|++|++++|+++. ++. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|.++ .+|..++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~--------~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC--------RIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC--------EECSCHH
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc--------ccCcchh
Confidence 67889999999999974 454 4444 4999999999999964 67889999999999999987 5666665
Q ss_pred cCcCCCcEEeccCCcccccCCc--cccCCCCCceEEeccccccccccc----ccccCCCCCeeeC
Q 037313 304 NNIPFLEELYLSKNMFYGDMPS--DLANCSYFRILILGFNDFSGAIPK----EIGNMTKLENLDL 362 (362)
Q Consensus 304 ~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l 362 (362)
..+++|+.|++++|++. .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.||+
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 66799999999999996 5565 7889999999999999998 5566 4899999999875
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.4e-16 Score=131.58 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCccccccCCcccc------cccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchH
Q 037313 148 GALPRIPCPPQDTLWLRQKKKAIKL------RRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPAN 221 (362)
Q Consensus 148 ~~l~~L~~l~l~~~~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (362)
.....++.+++..+.+. +..+. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..
T Consensus 15 ~~~~~l~~l~l~~~~l~---~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 15 EERKSVVATEAEKVELH---GMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHTTCCCCTTCSEEECC---BCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HhcccccCcchheeEec---cccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch
Confidence 34455566666666555 33332 45556666666666666654 44 5556666666666666665 45543
Q ss_pred HhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccC-ccccCCCCCCEEeCcCCccc
Q 037313 222 ICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIP-KEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 222 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 288 (362)
+. .+++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 89 ~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 89 DA-VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HH-HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred hh-cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 32 44566666666666644 23 35556666666666666653211 34556666666666666554
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=1.8e-15 Score=137.01 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCcEEecCCcccccccCcccc-CcCCCcEEEeecCcCcccCchHHh----hCCCCCcEEEcccCccccc----CCcccc
Q 037313 178 HEKKRVMAKNNFLTGTIPSSIF-NLSSLSNLDLSYNNLKGELPANIC----NNLPFLEILLLDENNFGRR----IPSTLS 248 (362)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~~~~~----~~~~l~ 248 (362)
+.|++|++++|.++......+. .+++|++|++++|.+++.....+. ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555554432222222 234455555555554422221111 1234455555555544321 222223
Q ss_pred CCCCCCeEEccccccccc----cCccccCCCCCCEEeCcCCccc
Q 037313 249 RCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
..++|++|++++|.+++. ++..+...++|+.|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 444455555555554422 1233334444555555555443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6e-13 Score=107.19 Aligned_cols=106 Identities=24% Similarity=0.332 Sum_probs=82.1
Q ss_pred CcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCc
Q 037313 204 LSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLS 283 (362)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (362)
-+.+++++|.+. .+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888886 7776542 678888888888887778788888888888888888886555556788888888888
Q ss_pred CCcccCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 284 QNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 284 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
+|.++ .++...+..+++|+.|++++|.+..
T Consensus 90 ~N~l~--------~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLK--------SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCC--------CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccc--------eeCHHHhccccCCCEEEeCCCCccc
Confidence 88876 4555555566888888888888763
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=7.6e-13 Score=106.19 Aligned_cols=108 Identities=25% Similarity=0.366 Sum_probs=83.0
Q ss_pred CCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeC
Q 037313 203 SLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYL 282 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 282 (362)
..+.+++++|.++ .+|..+ .+++++|++++|++++..|..+..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578888888887 677644 367888888888888777777888888888888888888666666778888888888
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCccccc
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGD 322 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 322 (362)
++|.++ .++...+..+++|+.|++++|.+...
T Consensus 86 ~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLK--------SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCC--------CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccC--------EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888876 45555555667888888888877644
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=8.2e-13 Score=106.01 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=88.2
Q ss_pred CcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEcc
Q 037313 180 KKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLS 259 (362)
Q Consensus 180 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 259 (362)
.+.+++++|.++. +|..+. ++|++|++++|.++ .+++..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4789999998874 666553 78999999999998 5554444588999999999999987777778899999999999
Q ss_pred ccccccccCccccCCCCCCEEeCcCCcccC
Q 037313 260 VNGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
+|.+++..+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999996666678899999999999998763
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=2e-11 Score=111.48 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=182.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcccCCccccccccCCcccCC
Q 037313 70 RVTALNISGLNLTGTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGA 149 (362)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~ 149 (362)
+++.+.+..+ ++..-..+|.+. +|+.+.+.. .++..-+.+|.+|++|+.+++.+|.++. ++.....
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-----------I~~~aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-----------LPASTFV 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-----------ECTTTTT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-----------echhhEe
Confidence 5677777665 553444567774 799999985 5665556788899999999999988765 5555444
Q ss_pred CCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCC
Q 037313 150 LPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFL 229 (362)
Q Consensus 150 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (362)
..+|+.+.+..+ +. ..-...+..+++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+. .++...|..+++|
T Consensus 202 ~~~L~~l~lp~~-l~---~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L 273 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LK---EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPEL 273 (401)
T ss_dssp TCCCSEEECCTT-CC---EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTC
T ss_pred ecccCEEEeCCc-hh---eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCC
Confidence 678888888644 32 223344667889999999875 45444555656 789999994 5566 7777888899999
Q ss_pred cEEEcccCccc-----ccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhc
Q 037313 230 EILLLDENNFG-----RRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYN 304 (362)
Q Consensus 230 ~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 304 (362)
+++.+.++.+. ......|..+++|+.+.+.+ .++.....+|..+.+|+.+++..+ ++ .+....|.
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~--------~I~~~aF~ 343 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT--------QINFSAFN 343 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC--------EECTTSSS
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc--------EEcHHhCC
Confidence 99999988664 35667789999999999994 477566788999999999999765 44 66677777
Q ss_pred CcCCCcEEeccCCcccccCCccccCCC-CCceEEecccccc
Q 037313 305 NIPFLEELYLSKNMFYGDMPSDLANCS-YFRILILGFNDFS 344 (362)
Q Consensus 305 ~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~ 344 (362)
.+ +|+.+++++|.........|..++ .++.+++..+.+.
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 76 999999999988756667788774 7889998877654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.7e-12 Score=104.45 Aligned_cols=105 Identities=22% Similarity=0.300 Sum_probs=88.0
Q ss_pred cEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccc
Q 037313 181 KRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSV 260 (362)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (362)
+.+++++|.++ .+|..+. ++|++|++++|.+. .+++..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 78999999886 5677664 78999999999998 55544445899999999999999876666678999999999999
Q ss_pred cccccccCccccCCCCCCEEeCcCCcccC
Q 037313 261 NGFSGAIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
|.+++..+..+..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996555668899999999999998763
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=3.1e-14 Score=128.88 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=68.3
Q ss_pred CCCcEEecCCcccccccCccc-----cCcCCCcEEEeecCcCccc----CchHHhhCCCCCcEEEcccCccccc----CC
Q 037313 178 HEKKRVMAKNNFLTGTIPSSI-----FNLSSLSNLDLSYNNLKGE----LPANICNNLPFLEILLLDENNFGRR----IP 244 (362)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~ 244 (362)
++|++|++++|.++......+ ...++|++|++++|.+++. ++..+ ...++|++|++++|.++.. ++
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 345666666666654333333 2346677777777776532 22222 2566777777777776542 24
Q ss_pred ccccCCCCCCeEEccccccccc----cCccccCCCCCCEEeCcCCcccCc
Q 037313 245 STLSRCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYLSQNSLQGI 290 (362)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 290 (362)
..+...++|++|++++|.+++. ++..+...++|+.|++++|.+++.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 4455667788888888887643 333444567788888888877643
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1e-10 Score=104.99 Aligned_cols=104 Identities=21% Similarity=0.247 Sum_probs=85.2
Q ss_pred cEEecCCc-ccccccCccccCcCCCcEEEeec-CcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEc
Q 037313 181 KRVMAKNN-FLTGTIPSSIFNLSSLSNLDLSY-NNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSL 258 (362)
Q Consensus 181 ~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 258 (362)
..++++++ .++ .+|. +..+++|++|+|++ |.+. .+++..+..+++|++|++++|++++..|..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45678877 777 4777 88999999999996 8888 566555568999999999999998888888899999999999
Q ss_pred cccccccccCccccCCCCCCEEeCcCCccc
Q 037313 259 SVNGFSGAIPKEIGNLTKLKSLYLSQNSLQ 288 (362)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (362)
++|.+++..+..+..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999855555555554 999999999876
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.2e-10 Score=104.47 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=88.9
Q ss_pred cEEEeecC-cCcccCchHHhhCCCCCcEEEccc-CcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeC
Q 037313 205 SNLDLSYN-NLKGELPANICNNLPFLEILLLDE-NNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYL 282 (362)
Q Consensus 205 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 282 (362)
..++++++ .++ .+|. + ..+++|++|++++ |.+++..+..+..+++|++|+|++|.+++..|..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688887 787 7887 5 4888999999996 9998877788999999999999999999888888999999999999
Q ss_pred cCCcccCcccccccccChhhhcCcCCCcEEeccCCcccc
Q 037313 283 SQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYG 321 (362)
Q Consensus 283 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 321 (362)
++|.++ .+|...+..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~--------~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALE--------SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCS--------CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccc--------eeCHHHcccCC-ceEEEeeCCCccC
Confidence 999987 56666666544 9999999998864
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=3.5e-08 Score=89.98 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred cccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCc
Q 037313 246 TLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPS 325 (362)
Q Consensus 246 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 325 (362)
.+..+.+|+.+.+.++ ++.....+|..+.+|+.+++..+ ++ .+....|..+.+|+.+++..+ ++..-..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~--------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE--------EIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc--------EEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 3455667777776554 44344556777778888877654 33 555666666677888888765 5434456
Q ss_pred cccCCCCCceEEecccccccccccccccCCCCCee
Q 037313 326 DLANCSYFRILILGFNDFSGAIPKEIGNMTKLENL 360 (362)
Q Consensus 326 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 360 (362)
+|..+++|+.+++..+ +. .+...|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7888888888888654 22 234567777777765
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=3e-08 Score=90.44 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=141.1
Q ss_pred CccccCCCCCcEEEccCCCCcccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcc
Q 037313 110 PASIYNMSSLLSINFTNNTLFAELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNF 189 (362)
Q Consensus 110 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 189 (362)
..+|.++++|+.+.+.++... + -...+.++.+|+.+.+..+ +. ......+.....|+.+.+..+.
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~--I---------~~~~F~~c~~L~~i~l~~~-~~---~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET--L---------HNGLFSGCGKLKSIKLPRN-LK---IIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE--E---------CTTTTTTCTTCCBCCCCTT-CC---EECTTTTTTCTTCCBCCCCTTC
T ss_pred hhhhcccCCCcEEecCCccce--e---------ccccccCCCCceEEEcCCC-ce---EeCchhhccccccceeecCCCc
Confidence 456778889999888654321 0 2234667788888877655 21 1112334556677777766554
Q ss_pred cccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCc
Q 037313 190 LTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPK 269 (362)
Q Consensus 190 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 269 (362)
.. +.........|+.+.+... +. .+....+.....++.+.+..+.. ......+..+..++.+....+.+. ..
T Consensus 220 ~~--i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 220 YY--LGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp CE--ECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred eE--eehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cc
Confidence 32 2333445567888877543 33 44445555777888888876633 345556777888888877665432 34
Q ss_pred cccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEeccccccccccc
Q 037313 270 EIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPK 349 (362)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 349 (362)
.+..+.+|+.+.+..+ ++ .+....|..+.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++.....
T Consensus 292 ~F~~~~~L~~i~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK--------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred cccccccccccccccc-cc--------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 5667888888888765 33 556666666688888888654 54344567888888888888766 5545566
Q ss_pred ccccCCCCCeeeC
Q 037313 350 EIGNMTKLENLDL 362 (362)
Q Consensus 350 ~~~~l~~L~~L~l 362 (362)
+|.+|++|+.+++
T Consensus 361 aF~~C~~L~~i~l 373 (394)
T 4fs7_A 361 AFQGCINLKKVEL 373 (394)
T ss_dssp TBTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 7888888888753
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1e-10 Score=104.92 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=103.1
Q ss_pred CCcEEEEEcCCCCCcc-c-------CCccCCCCCCCCEEeCCCCccc---------ccCCccccCCCCCcEEEccCCCCc
Q 037313 68 SQRVTALNISGLNLTG-T-------IPSELGDLSSLQTLDLSFHWFS---------GSIPASIYNMSSLLSINFTNNTLF 130 (362)
Q Consensus 68 ~~~l~~L~l~~~~l~~-~-------~~~~l~~l~~L~~L~l~~n~~~---------~~~~~~l~~l~~L~~L~l~~n~~~ 130 (362)
..+|+.|.+......+ . +..++.++++|+.|.+...... +.+...+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567788777665442 1 1233456778888887654321 123333455667777777655210
Q ss_pred ccCCccccccccCCcccCCCCCCCCCCCCCccccccCCcccccccccCCCcEEecCCcccccccCcccc--CcCCCcEEE
Q 037313 131 AELPPIFFFYLKVPPTVGALPRIPCPPQDTLWLRQKKKAIKLRRFFWHEKKRVMAKNNFLTGTIPSSIF--NLSSLSNLD 208 (362)
Q Consensus 131 ~~~p~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~ 208 (362)
. ++. + ..++|++|++..+.++......+. .+|+|+.|+
T Consensus 186 -~----------l~~----------------------------~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 186 -S----------IGK----------------------------K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225 (362)
T ss_dssp -B----------CCS----------------------------C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEE
T ss_pred -e----------ecc----------------------------c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEE
Confidence 0 111 1 245667777766665543333333 567777777
Q ss_pred eec--CcCccc-----CchHHh-hCCCCCcEEEcccCcccccCCccc---cCCCCCCeEEccccccccc----cCccccC
Q 037313 209 LSY--NNLKGE-----LPANIC-NNLPFLEILLLDENNFGRRIPSTL---SRCKHLQTLSLSVNGFSGA----IPKEIGN 273 (362)
Q Consensus 209 l~~--n~l~~~-----~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~----~~~~~~~ 273 (362)
++. +...+. +...+. ..+|+|++|++.+|.+....+..+ ..+++|++|+++.|.+.+. ++..+..
T Consensus 226 L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305 (362)
T ss_dssp EECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred EeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence 753 111111 111111 246788888888877654322222 2467888888888888754 2333445
Q ss_pred CCCCCEEeCcCCcccC
Q 037313 274 LTKLKSLYLSQNSLQG 289 (362)
Q Consensus 274 l~~L~~L~L~~n~l~~ 289 (362)
+++|+.|++++|.+++
T Consensus 306 l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 306 IKHLKFINMKYNYLSD 321 (362)
T ss_dssp HTTCSEEECCSBBCCH
T ss_pred CCcceEEECCCCcCCH
Confidence 7888999998887653
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=1.2e-09 Score=97.91 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=105.3
Q ss_pred ccccCCCcEEecCCcccc---------cccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCC
Q 037313 174 RFFWHEKKRVMAKNNFLT---------GTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIP 244 (362)
Q Consensus 174 ~~~~~~L~~L~l~~n~~~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 244 (362)
...+++|+.|.+...... +.+...+..+|+|+.|.+++|.-. .++. + .+++|++|++..|.++....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHH
Confidence 445788999988654321 123344567789999999877322 3333 2 47889999998887754433
Q ss_pred cccc--CCCCCCeEEccc--cccccc-----cCccc--cCCCCCCEEeCcCCcccCcccccccccChhhh--cCcCCCcE
Q 037313 245 STLS--RCKHLQTLSLSV--NGFSGA-----IPKEI--GNLTKLKSLYLSQNSLQGIVNRLSAELPANFY--NNIPFLEE 311 (362)
Q Consensus 245 ~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~--~~~~~L~~ 311 (362)
..+. .+++|++|+|+. +...+. +...+ ..+++|+.|++.+|.+.+. ....++ ..+++|++
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-------~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-------VVEMFLESDILPQLET 283 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-------HHHHHHHCSSGGGCSE
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-------HHHHHHhCccCCCCCE
Confidence 3343 678899998853 221111 11122 2478999999988877532 112222 13578999
Q ss_pred EeccCCccccc----CCccccCCCCCceEEeccccccccccccc
Q 037313 312 LYLSKNMFYGD----MPSDLANCSYFRILILGFNDFSGAIPKEI 351 (362)
Q Consensus 312 L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 351 (362)
|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 99999988653 34445677889999999998876443333
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.86 E-value=3.1e-07 Score=83.67 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=47.2
Q ss_pred ccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCcc
Q 037313 247 LSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSD 326 (362)
Q Consensus 247 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 326 (362)
+..+.+|+.+.+.++... ....+|.++++|+.+.+... ++ .++...|..+.+|+.+++..+ ++..-..+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT--------ELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCCc-cc--------ccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 344555555555433222 22334444555555555422 21 344444444455555555443 33222345
Q ss_pred ccCCCCCceEEecccccccccccccccCCCCCeee
Q 037313 327 LANCSYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 327 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
|..+.+|+.+.+..+ ++.....+|.+|++|+.++
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 555555555555432 3323334555555555543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.77 E-value=4e-07 Score=82.93 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=88.5
Q ss_pred hHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccC
Q 037313 220 ANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELP 299 (362)
Q Consensus 220 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 299 (362)
...|..+..|+.+.+..+.. ......+..+++|+.+.+. +.++.....+|..+.+|+.+++..+ ++ .+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~--------~I~ 326 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT--------QIL 326 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC--------EEC
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc--------Eeh
Confidence 44455677888888866532 4455667888999999986 3455455677888999999999865 33 566
Q ss_pred hhhhcCcCCCcEEeccCCcccccCCccccCCCCCceEEecccccccccccccccCCCCCeee
Q 037313 300 ANFYNNIPFLEELYLSKNMFYGDMPSDLANCSYFRILILGFNDFSGAIPKEIGNMTKLENLD 361 (362)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 361 (362)
...|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.++.... ..+..+.+|+.+.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 677777788999999655 553445678999999999998875442 3566677777664
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=4.4e-06 Score=75.56 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhc
Q 037313 225 NLPFLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYN 304 (362)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 304 (362)
....|+.+.+..+ ++......+..+.+|+.+.+..+ +......+|..+.+|+.+.+.++.++ .+....|.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--------~I~~~aF~ 307 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--------TLEPRVFM 307 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--------EECTTTTT
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc--------eehhhhhc
Confidence 4444555544433 22333334444555555555432 22223334555555665555555443 34444444
Q ss_pred CcCCCcEEeccCCcccccCCccccCCCCCceEEec
Q 037313 305 NIPFLEELYLSKNMFYGDMPSDLANCSYFRILILG 339 (362)
Q Consensus 305 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 339 (362)
.+.+|+.+++..+ ++..-..+|.++.+|+.+.+.
T Consensus 308 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 4455666665433 332223455555556555554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=9.4e-09 Score=83.32 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=41.9
Q ss_pred CCCCCeEEccccccccc----cCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEec--cCCccccc-
Q 037313 250 CKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYL--SKNMFYGD- 322 (362)
Q Consensus 250 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n~i~~~- 322 (362)
.++|++|+|++|.+... +...+...++|++|+|++|.+++.+. ..+...+..+ +.|++|++ ++|.+...
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~---~~l~~~L~~n-~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI---LALVEALQSN-TSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH---HHHHHGGGGC-SSCCEEECCCCSSCCCHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH---HHHHHHHHhC-CCceEEEecCCCCCCCHHH
Confidence 34455555555554422 22233334555555555555543210 0111222222 45666666 55655432
Q ss_pred ---CCccccCCCCCceEEecccccc
Q 037313 323 ---MPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 323 ---~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
+...+...++|+.|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334445566666666666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=3.3e-09 Score=90.50 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=16.4
Q ss_pred CCcceeeeeecCCCCcEEEEEcCC
Q 037313 55 FVCNWTGITCDVRSQRVTALNISG 78 (362)
Q Consensus 55 ~~c~~~g~~c~~~~~~l~~L~l~~ 78 (362)
..|.|.|+.|+....+|..+...+
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHHhcCcEEECCCCCEEEEEEecC
Confidence 357899999987555665554433
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=2.4e-08 Score=80.94 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCCcEEEcccCccccc----CCccccCCCCCCeEEccccccccc----cCccccCCCCCCEEeC--cCCcccCccccccc
Q 037313 227 PFLEILLLDENNFGRR----IPSTLSRCKHLQTLSLSVNGFSGA----IPKEIGNLTKLKSLYL--SQNSLQGIVNRLSA 296 (362)
Q Consensus 227 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~ 296 (362)
++|++|++++|.+... +...+...++|++|+|++|.+.+. +...+...++|+.|++ ++|.+++... .
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~---~ 141 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE---M 141 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH---H
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH---H
Confidence 4455555555544321 122233345566666666665532 2344455566666666 5565543211 0
Q ss_pred ccChhhhcCcCCCcEEeccCCccc
Q 037313 297 ELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
.+...+..+ +.|++|++++|.+.
T Consensus 142 ~l~~~L~~n-~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKN-TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHC-SSCCEEECCCSSHH
T ss_pred HHHHHHHhC-CCcCEEeccCCCCC
Confidence 122222222 56777777776654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.2e-07 Score=80.78 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCCCCCeEEcccccccc--ccCccccCCCCCCEEeCcCCcccC
Q 037313 249 RCKHLQTLSLSVNGFSG--AIPKEIGNLTKLKSLYLSQNSLQG 289 (362)
Q Consensus 249 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 289 (362)
.+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 35566666666666654 334444555666666666665543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=7.5e-05 Score=67.36 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=79.6
Q ss_pred CCCcEEecCCcccccccCccccCcCCCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCcccccCCccccCCCCCCeEE
Q 037313 178 HEKKRVMAKNNFLTGTIPSSIFNLSSLSNLDLSYNNLKGELPANICNNLPFLEILLLDENNFGRRIPSTLSRCKHLQTLS 257 (362)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 257 (362)
..++.+.+..+ +.......+.++..|+.+.+..+ ++ .+....+....+|+.+.+..+ ++......+..+++|+.+.
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 34444444332 22223344556667777766544 43 455555556667777776543 3334445566777777777
Q ss_pred ccccccccccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCcccccCCccccCCC
Q 037313 258 LSVNGFSGAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFYGDMPSDLANCS 331 (362)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 331 (362)
+.++.++.....+|.++.+|+.+.+..+ ++ .+....|..+.+|+.+.+..+ ++..-..+|.+++
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~--------~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LK--------TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-cc--------EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7776666455566777777777777654 33 455555555567777776544 3322244555553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.1e-06 Score=69.65 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCcEEEeecCcCcccCchHHhhCCCCCcEEEcccCc-ccccCCccccCC----CCCCeEEccccc-cccccCccccCCCC
Q 037313 203 SLSNLDLSYNNLKGELPANICNNLPFLEILLLDENN-FGRRIPSTLSRC----KHLQTLSLSVNG-FSGAIPKEIGNLTK 276 (362)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~ 276 (362)
.|++||++++.+++.--..+. .+++|++|++++|. ++...-..++.+ ++|++|++++|. +++.....+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 466666666665543333342 56666666666663 444333334433 357777777764 66554455666777
Q ss_pred CCEEeCcCCc
Q 037313 277 LKSLYLSQNS 286 (362)
Q Consensus 277 L~~L~L~~n~ 286 (362)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8.6e-07 Score=70.22 Aligned_cols=58 Identities=3% Similarity=0.004 Sum_probs=29.7
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCeEEccccc-cccccCccccCC----CCCCEEeCcCC
Q 037313 228 FLEILLLDENNFGRRIPSTLSRCKHLQTLSLSVNG-FSGAIPKEIGNL----TKLKSLYLSQN 285 (362)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n 285 (362)
.|++|++++|.++...-..+..+++|++|+|++|. +++.....++.+ ++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 45555555555554444445555556666665553 443333334332 24555565555
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.75 E-value=1e-05 Score=65.23 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=5.3
Q ss_pred cCCCcEEEeec
Q 037313 201 LSSLSNLDLSY 211 (362)
Q Consensus 201 l~~L~~L~l~~ 211 (362)
-+.|++|++++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=4.3e-05 Score=61.59 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=82.4
Q ss_pred hCCCCCcEEEcccC-cccc----cCCccccCCCCCCeEEcccccccccc----CccccCCCCCCEEeCcCCcccCccccc
Q 037313 224 NNLPFLEILLLDEN-NFGR----RIPSTLSRCKHLQTLSLSVNGFSGAI----PKEIGNLTKLKSLYLSQNSLQGIVNRL 294 (362)
Q Consensus 224 ~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 294 (362)
..-+.|++|++++| ++.. .+.+.+..-+.|+.|+|++|.+.+.. .+.+.....|++|+|++|.+.+.+-
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga-- 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL-- 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--
Confidence 35678999999985 7643 23445667789999999999997543 3445567899999999999875421
Q ss_pred ccccChhhhcCcCCCcEEeccCC---cccc----cCCccccCCCCCceEEecccccc
Q 037313 295 SAELPANFYNNIPFLEELYLSKN---MFYG----DMPSDLANCSYFRILILGFNDFS 344 (362)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~L~~n---~i~~----~~~~~~~~l~~L~~L~l~~n~l~ 344 (362)
..+-..+..+ ..|++|+|++| .+.. .+...+...+.|+.|+++.|.+.
T Consensus 116 -~ala~aL~~N-~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 -ARLLRSTLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp -HHHHHHTTTT-CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred -HHHHHHHhhC-CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1222333344 67999999865 3332 24456778889999999887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0072 Score=45.19 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=43.8
Q ss_pred EEEcCCCCCc-ccCCccCCCCCCCCEEeCCCCcccccCCccccCCCCCcEEEccCCCCcc
Q 037313 73 ALNISGLNLT-GTIPSELGDLSSLQTLDLSFHWFSGSIPASIYNMSSLLSINFTNNTLFA 131 (362)
Q Consensus 73 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 131 (362)
.++-++++++ ..+|..+. ++|++|+|++|+++..-+..|..+++|++|+|++|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5677777775 35675443 369999999999986555667889999999999998743
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0049 Score=46.16 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=41.4
Q ss_pred CeEEccccccc-cccCccccCCCCCCEEeCcCCcccCcccccccccChhhhcCcCCCcEEeccCCccc
Q 037313 254 QTLSLSVNGFS-GAIPKEIGNLTKLKSLYLSQNSLQGIVNRLSAELPANFYNNIPFLEELYLSKNMFY 320 (362)
Q Consensus 254 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 320 (362)
..++-+++.++ ..+|..+ .++++.|+|++|.++ .++...+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~--------~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT--------ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS--------SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC--------ccChhhhhhccccCEEEecCCCee
Confidence 46777777775 3456443 246888888888887 677777777788888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.16 E-value=42 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=6.2
Q ss_pred cccCCCCCCeEEcc
Q 037313 246 TLSRCKHLQTLSLS 259 (362)
Q Consensus 246 ~l~~l~~L~~L~l~ 259 (362)
.|..|.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 34444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.14 E-value=29 Score=23.90 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=28.9
Q ss_pred ccccCCccccCCCCCCeEEccccccccccCccccCCCCCCEEeCcCC
Q 037313 239 FGRRIPSTLSRCKHLQTLSLSVNGFSGAIPKEIGNLTKLKSLYLSQN 285 (362)
Q Consensus 239 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (362)
++......|..+.+|+.+.|-.+ ++.....+|..+.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33444556677777777777654 33344566777777877777653
Done!