BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037314
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 20/210 (9%)
Query: 176 LKRFPEISCNIEHLD---LKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKS 232
L +FP+ + + HL + + ELP + + L L L + L+++ +S+ +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 233 LVNLYLSGCLKLEKLPEEIGNLES---------LEVMLANETAISQVPPSIACLNRVESL 283
L L + C +L +LPE + + ++ L+ + T I +P SIA L ++SL
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 284 SFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDC-GITELPESLGRSPSLNYLNLAE-NDF 341
PL +L P + L LE L L C + P G L L L + ++
Sbjct: 212 KIRNS----PLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 342 EKIPSSIKQLSKLLFLTLRNCKRLQSLPEL 371
+P I +L++L L LR C L LP L
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 303 FQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNC 362
F+L +L++ ++ G+ ELP++ + L L LA N +P+SI L++L L++R C
Sbjct: 101 FRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 363 KRLQSLPELPCGST 376
L LPE P ST
Sbjct: 161 PELTELPE-PLAST 173
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 244 LEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILF 303
L +LP+ LE + + +P SIA LNR+ LS C P L L P+
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC---PELTELPEPLAS 172
Query: 304 Q--------LQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLL 355
L NL+ L L GI LP S+ +L L + + + +I L KL
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 356 FLTLRNCKRLQSLPELPCGSTIFAR 380
L LR C L++ P + G R
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKR 257
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 20/216 (9%)
Query: 60 LKSLPSKNIPE------HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDIS 113
L+S+P P+ HL + + + +L + Q A L+ L L+ + + I+
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIA 147
Query: 114 LAFNIERLDLVGCASLIE-------THSSIQH--LNKLVFLNLGHCISLKSLPTGI-NLD 163
+ L + C L E T +S +H L L L L ++SLP I NL
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQ 206
Query: 164 SLKVLYLGGCSNLKRFPEIS--CNIEHLDLKE-TAIEELPSSIGNLSRLVHLDLTNCSRL 220
+LK L + P I +E LDL+ TA+ P G + L L L +CS L
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 221 KSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLES 256
++ + L L L L GC+ L +LP I L +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 141/350 (40%), Gaps = 52/350 (14%)
Query: 9 LNPNTFTKMHRLRFFKFYNIFAGVNKYKV---------RHSRYLESLFNELRYFYWDGYP 59
+ P F ++ RL N F +N K H L NE +D
Sbjct: 216 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274
Query: 60 LKSLPSKNIPE-HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNI 118
L+ L + I E L L+ I L+N + N+++ ++++ + R+ D S F
Sbjct: 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT----IERVKDFSYNFGW 330
Query: 119 ERLDLVGCASLIETHSSIQHLNKLVFLN--LGHCISLKSLPTGINLD-SLKVLYLGGCSN 175
+ L+LV C ++ L +L F + G+ S LP+ LD S L GC +
Sbjct: 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390
Query: 176 LKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVS--SSLCNLKSL 233
F IS +++LDL + + S+ L +L HLD + S LK +S S +L++L
Sbjct: 391 QSDFGTIS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNL 447
Query: 234 VNLYLSGCLKLEKLPEEIGNLESLEVM-LANETAISQVPPSIACLNRVESLSFDRCKGRP 292
+ L +S L SLEV+ +A + P I
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---------------- 491
Query: 293 PLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDF 341
+L+NL +L L C + +L P + SL LN++ N+F
Sbjct: 492 -----------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 141/350 (40%), Gaps = 52/350 (14%)
Query: 9 LNPNTFTKMHRLRFFKFYNIFAGVNKYKV---------RHSRYLESLFNELRYFYWDGYP 59
+ P F ++ RL N F +N K H L NE +D
Sbjct: 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 60 LKSLPSKNIPE-HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNI 118
L+ L + I E L L+ +I L+N + N+++ ++++ + R+ D S F
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDFSYNFGW 306
Query: 119 ERLDLVGCASLIETHSSIQHLNKLVFLN--LGHCISLKSLPTGINLD-SLKVLYLGGCSN 175
+ L+LV C ++ L +L F + G+ S LP+ LD S L GC +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 176 LKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVS--SSLCNLKSL 233
F S +++LDL + + S+ L +L HLD + S LK +S S +L++L
Sbjct: 367 QSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNL 423
Query: 234 VNLYLSGCLKLEKLPEEIGNLESLEVM-LANETAISQVPPSIACLNRVESLSFDRCKGRP 292
+ L +S L SLEV+ +A + P I
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---------------- 467
Query: 293 PLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDF 341
+L+NL +L L C + +L P + SL LN++ N+F
Sbjct: 468 -----------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 189 LDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKL 247
LDL+ I E+ NL L L L N K + L L LYLS +L++L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKEL 115
Query: 248 PEEIGNLESLEVMLANETAISQVPPSI-ACLNRVESLSFDRCKGRPPLMSLKLP-ILFQ- 304
PE++ ++L+ + +E I++V S+ LN++ + G PL S + FQ
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL----GTNPLKSSGIENGAFQG 169
Query: 305 LQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI-PSSIKQLSKLLFLTL 359
++ L Y+ + D IT +P+ G PSL L+L N K+ +S+K L+ L L L
Sbjct: 170 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 189 LDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKL 247
LDL+ I E+ NL L L L N K + L L LYLS +L++L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKEL 115
Query: 248 PEEIGNLESLEVMLANETAISQVPPSI-ACLNRVESLSFDRCKGRPPLMSLKLP-ILFQ- 304
PE++ ++L+ + +E I++V S+ LN++ + G PL S + FQ
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL----GTNPLKSSGIENGAFQG 169
Query: 305 LQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI-PSSIKQLSKLLFLTL 359
++ L Y+ + D IT +P+ G PSL L+L N K+ +S+K L+ L L L
Sbjct: 170 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 44/201 (21%)
Query: 273 SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSL 331
I+ L + +L++ G L SL + +L NL+ L LV+ + LP+ + + +L
Sbjct: 77 DISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 332 NYLNLAENDFEKIPSSI-KQLSKLLFLTLRNCKRLQSLPELPCGSTIFARHCXXXXXXXX 390
YLNLA N + +P + +L+ L L L + +LQSLPE +F +
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPE-----GVFDKLTQLKD---- 185
Query: 391 XXXXXXXXXXXWQAFDFCNCFKLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPN 450
+L +N++ + +G ++ + W + +
Sbjct: 186 --------------------LRLYQNQLKSVPDGVFDRLTSLQYIW-----------LHD 214
Query: 451 SPWGCVCYPGSEIPEWFSFQS 471
+PW C C + EW + S
Sbjct: 215 NPWDCTCPGIRYLSEWINKHS 235
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 50/201 (24%)
Query: 273 SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSL 331
I+ L + +L++ G L SL + +L NL+ L LV+ + LP+ + + +L
Sbjct: 77 DISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 332 NYLNLAENDFEKIPSSI-KQLSKLLFLTLRNCKRLQSLPELPCGSTIFARHCXXXXXXXX 390
YL L N + +P + +L+ L L L N +LQSLPE
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN-NQLQSLPE-------------------- 174
Query: 391 XXXXXXXXXXXWQAFDFCNCFK---LNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGD 447
FD K LN N++ + +G ++ + W
Sbjct: 175 ------------GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIW----------- 211
Query: 448 VPNSPWGCVCYPGSEIPEWFS 468
+ N+PW C C + W S
Sbjct: 212 LLNNPWDCACSDILYLSRWIS 232
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 206 LSRLVH-LDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264
L R H L+L N L S+ +L+SLV + C L +LPE +L+SL V N
Sbjct: 69 LDRQAHELELNNLG-LSSLPELPPHLESLV----ASCNSLTELPELPQSLKSLLVDNNNL 123
Query: 265 TAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPES 324
A+S +PP + L +S ++ + KLP +LQN +L ++D L +
Sbjct: 124 KALSDLPPLLEYL----GVSNNQLE--------KLP---ELQNSSFLKIIDVDNNSLKKL 168
Query: 325 LGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTL--RNCKRLQSLPELPCG 374
PSL ++ N E++P +L L FLT + L+ LP+LP
Sbjct: 169 PDLPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKKLPDLPLS 216
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 134/332 (40%), Gaps = 77/332 (23%)
Query: 60 LKSLPSKNIPEHLVSL-----------EMPHSNIEQLWNGVQNLAALKRLN--LSY---- 102
L SLP +P HL SL E+P S ++ L NL AL L L Y
Sbjct: 83 LSSLPE--LPPHLESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 103 SKQLSRIPDI--SLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI 160
+ QL ++P++ S I +D L + S++ F+ G+ L+ LP
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE------FIAAGNN-QLEELPELQ 192
Query: 161 NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRL 220
NL L +Y S LK+ P++ ++E + +EELP
Sbjct: 193 NLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-------------------- 231
Query: 221 KSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRV 280
L NL L +Y L L+ LP+ +LE+L V T + ++P S+ L+
Sbjct: 232 -----ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 281 ESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAEND 340
E++ F PP NL YL+ I L PSL LN++ N
Sbjct: 286 ENI-FSGLSELPP-------------NLYYLNASSNEIRSL---CDLPPSLEELNVSNNK 328
Query: 341 FEKIPSSIKQLSKLLFLTLRNCKRLQSLPELP 372
++P+ +L +L + + L +PELP
Sbjct: 329 LIELPALPPRLERL----IASFNHLAEVPELP 356
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 161 NLDSLKVLYLGGCSNL--KRFPEIS--CNIEHLDLKETAIE-ELPSSIGNLSRLVHLDLT 215
NL L LY+GG +NL P I+ + +L + T + +P + + LV LD +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 216 NCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESL--EVMLANETAISQVPPS 273
+ ++ S+ +L +LV + G +P+ G+ L + ++ ++PP+
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 274 IACLN 278
A LN
Sbjct: 194 FANLN 198
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 174 SNLKRFPEISCNIEHLD------LKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSL 227
SNL+ F IS NI D L ++ ELP+ I NLS L LDL++ +RL S+ + L
Sbjct: 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAEL 289
Query: 228 CNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVM 260
+ L Y + + LP E GNL +L+ +
Sbjct: 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 198 ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESL 257
++P ++ N S LV L L+ ++ SSL +L L +L L + ++P+E+ +++L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 258 EVMLANETAIS-QVPPSIACLNRVE--SLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLV 314
E ++ + ++ ++P ++ + SLS +R G P + +L+NL L L
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------KWIGRLENLAILKLS 519
Query: 315 DCGIT-ELPESLGRSPSLNYLNLAENDFE-KIPSSI-KQLSKL 354
+ + +P LG SL +L+L N F IP+++ KQ K+
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 198 ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESL 257
++P ++ N S LV L L+ ++ SSL +L L +L L + ++P+E+ +++L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 258 EVMLANETAIS-QVPPSIACLNRVE--SLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLV 314
E ++ + ++ ++P ++ + SLS +R G P + +L+NL L L
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------KWIGRLENLAILKLS 522
Query: 315 DCGIT-ELPESLGRSPSLNYLNLAENDFE-KIPSSI-KQLSKL 354
+ + +P LG SL +L+L N F IP+++ KQ K+
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 70 EHLVSLEMPHSNIE-------QLWNGVQNLAALKRLNLSYSKQLSRIPDISLAF--NIER 120
E+L L++ HS+IE QL +NL L+ LNLSY++ L + D + +E
Sbjct: 349 ENLQKLDLSHSDIEASDCCNLQL----KNLRHLQYLNLSYNEPLG-LEDQAFKECPQLEL 403
Query: 121 LDLVGCASLIET-HSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRF 179
LD+ ++ HS Q+L+ L LNL HC+ LD+ L G +L+
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL----------LDTSNQHLLAGLQDLR-- 451
Query: 180 PEISCNIEHLDLKETAIEELPSSIGNLSRLVH----LDLTNCSRLKSVSSSLCNLKSLVN 235
HL+L+ + ++ S NL ++V L L++C+ L + L+++ +
Sbjct: 452 --------HLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 236 LYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSI 274
L LS + + +L+ L + +A+ I +PP +
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGLYLNMASNN-IRIIPPHL 541
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 43/202 (21%)
Query: 153 LKSLPTGI--NLDSLKVLYLG-------GCSNLKRFPEISCNIEHLDLKETAIEELPSSI 203
L+SLP G+ L L L L GC + F S +++LDL + + S+
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNF 97
Query: 204 GNLSRLVHLDLTNCSRLKSVS--SSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVM- 260
L +L HLD + S LK +S S +L++L+ L +S L SLEV+
Sbjct: 98 LGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 261 LANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE 320
+A + P I +L+NL +L L C + +
Sbjct: 157 MAGNSFQENFLPD---------------------------IFTELRNLTFLDLSQCQLEQ 189
Query: 321 L-PESLGRSPSLNYLNLAENDF 341
L P + SL LN++ N+F
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 131/337 (38%), Gaps = 70/337 (20%)
Query: 9 LNPNTFTKMHRLRFFKFYNIFAGVNKYKV---------RHSRYLESLFNELRYFYWDGYP 59
+ P F ++ RL N F +N K H L NE +D
Sbjct: 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 60 LKSLPSKNIPE-HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNI 118
L+ L + I E L L+ +I L+N + N+++ ++++ + R+ D S F
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDFSYNFGW 306
Query: 119 ERLDLVGCASLIETHSSIQHLNKLVFLN--LGHCISLKSLPTGINLD-SLKVLYLGGCSN 175
+ L+LV C ++ L +L F + G+ S LP+ LD S L GC +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 176 LKRFPEISC---------------------NIEHLDLKETAIEELP--SSIGNLSRLVHL 212
F S +EHLD + + ++++ S +L L++L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 213 D----------------LTNCSRLKSVSSSL---------CNLKSLVNLYLSGCLKLEKL 247
D L++ LK +S L++L L LS C +LE+L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQL 485
Query: 248 -PEEIGNLESLEVMLANETAISQVPPSIACLNRVESL 283
P +L SL+V+ + VP I +R+ SL
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGI--FDRLTSL 520
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 32/176 (18%)
Query: 181 EISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLK-SVSSSLCNLKSLVNLYLS 239
+ SC+ +D + +P+ I +++++L ++L+ V SL NLK LYL
Sbjct: 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLK---ELYL- 71
Query: 240 GCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKL 299
G +L LP +G +SL + + +Q L + S FDR
Sbjct: 72 GSNQLGALP--VGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDR------------ 110
Query: 300 PILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIP-SSIKQLSKL 354
L +L+ L + +TELP + R L +L L +N + IP + +LS L
Sbjct: 111 -----LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 43/180 (23%)
Query: 294 LMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSLNYLNLAENDFEKIPSSI-KQL 351
L SL + +L +L L L + LP + + SL YLNL+ N + +P+ + +L
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 352 SKLLFLTLRNCKRLQSLPELPCGSTIFARHCXXXXXXXXXXXXXXXXXXXWQAFDFCNCF 411
++L L L N +LQSLP+ +F + Q D
Sbjct: 100 TQLKELAL-NTNQLQSLPD-----GVFDK--------------------LTQLKD----L 129
Query: 412 KLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFSFQS 471
+L +N++ + +G ++ + W + ++PW C C + EW + S
Sbjct: 130 RLYQNQLKSVPDGVFDRLTSLQYIW-----------LHDNPWDCTCPGIRYLSEWINKHS 178
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 151 ISLKSLPTGINLDSLKVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIEELPSSI-GNL 206
I L S+P GI D + L+L K P + N++ L + +P+ + L
Sbjct: 22 IRLASVPAGIPTDKQR-LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 207 SRLVHLDLTNCSRLKSV-SSSLCNLKSLVNLYL 238
++L LDL N + LKS+ + NLKSL ++YL
Sbjct: 81 TQLTQLDL-NDNHLKSIPRGAFDNLKSLTHIYL 112
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 178 RFPEIS-------CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNL 230
RF +IS ++ LDL T ++ LPS + L+ L L L+ + S N
Sbjct: 262 RFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANF 321
Query: 231 KSLVNLYLSGCLKLEKLP----EEIGNLESLEV 259
SL +LY+ G +K L E++GNL++L++
Sbjct: 322 PSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDL 354
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 151 ISLKSLPTGINLDSLKVLYLGGCSN-LKRFPEISCNIEHLDLKETAIEELPSSIGNLSRL 209
ISL LP + YL C N L PE+ +++HLD+ + LP + L
Sbjct: 93 ISLPELPASLE-------YLDACDNRLSTLPELPASLKHLDVDNNQLTXLP-ELPALLEY 144
Query: 210 VHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQ 269
++ D + L + +SL L N +L LPE +LE+L+V T + +
Sbjct: 145 INADNNQLTXLPELPTSLEVLSVRNN-------QLTFLPELPESLEALDV----STNLLE 193
Query: 270 VPPSIACLNR--VESLSFDRCK 289
P++ N E+ F RC+
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCR 215
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 186 IEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLE 245
++ LDL T + ELPS + LS L L L+ S N SL +L + G K
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-- 337
Query: 246 KLPEEIGNLESLEVMLANETAISQVPPSIAC------LNRVES----------------- 282
+L G LE+LE + + + + S C L+ ++S
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 283 ---------LSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNY 333
L+F R K + + L ++ NL + SL+D +L + L P+L +
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGL---PALQH 453
Query: 334 LNLAENDFEK----IPSSIKQLSKLLFLTLRNC 362
LNL N F K +S++ L +L L L C
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 305 LQNLEYLSLVDCGITELPESL-GRSPSLNYLNLAENDFEKIPSSI 348
L+NLE + + ++P + G+ P L LNLA N + +P I
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 103 SKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINL 162
K L +P + + E+LDL + ++ + L KL +LNL + L++L G+
Sbjct: 23 GKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFD 80
Query: 163 DSLKVLYLGGCSN------LKRFPEISCNIEHLDLKETAIEELPSSI-GNLSRLVHLDLT 215
D ++ LG +N L F ++ ++ L L ++ LPS + L++L L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRL- 138
Query: 216 NCSRLKSV-SSSLCNLKSLVNLYLSGCLKLEKLP----EEIGNLESLEV 259
N ++L+S+ + + L +L L LS +L+ +P + +G L+++ +
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITL 186
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 103 SKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINL 162
K L +P + + E+LDL + ++ + L KL +LNL + L++L G+
Sbjct: 23 GKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFD 80
Query: 163 DSLKVLYLGGCSN------LKRFPEISCNIEHLDLKETAIEELPSSI-GNLSRLVHLDLT 215
D ++ LG +N L F ++ ++ L L ++ LPS + L++L L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRL- 138
Query: 216 NCSRLKSV-SSSLCNLKSLVNLYLSGCLKLEKLP----EEIGNLESLEV 259
N ++L+S+ + + L +L L LS +L+ +P + +G L+++ +
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITL 186
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 321 LPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPELPCGSTI 377
LPE +G++P +N + D E K ++ + + K+L ELPC I
Sbjct: 46 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQI 102
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 321 LPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPELPCGSTI 377
LPE +G++P +N + D E K ++ + + K+L ELPC I
Sbjct: 45 LPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQI 101
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 10/185 (5%)
Query: 175 NLKRFPE-ISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSL 233
NL+ P+ IS N L+L E I+ + + + L HL++ SR + + L
Sbjct: 54 NLREVPDGISTNTRLLNLHENQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 234 VNLYLSGCL--KLEKLPE-EIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKG 290
NL +L +P L L+ + I +P NR+ SL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGE 169
Query: 291 RPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI-PSSIK 349
L + L NL YL+L C + E+P +L L+ L+L+ N I P S +
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 350 QLSKL 354
L L
Sbjct: 229 GLMHL 233
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 13/194 (6%)
Query: 176 LKRFPE-ISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSL 233
L + P+ I + +++DL ++ L S S N S L LDL+ C + L L
Sbjct: 23 LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 234 VNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRP 292
NL L+G P L SLE ++A ET ++ + I L ++ L+
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV----AHN 138
Query: 293 PLMSLKLPILF-QLQNLEYLSLVDCGITELP----ESLGRSPSLNY-LNLAENDFEKIPS 346
+ S KLP F L NL ++ L I + + L +P +N L+++ N + I
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 347 SIKQLSKLLFLTLR 360
Q KL LTLR
Sbjct: 199 QAFQGIKLHELTLR 212
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 181 EISCNIEHLDL--KETAIEELPSSIGNLSRLVHLD-----------LTNCSRLKSVSSSL 227
E+S HL++ + + LP + + ++HL L +RL ++
Sbjct: 5 EVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 228 CNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDR 287
C L L + G L + +G L+ L + + Q P++ L+ +SF+R
Sbjct: 65 C---ELTKLQVDGTLPV------LGTLDLSHNQLQSLPLLGQTLPALTVLD----VSFNR 111
Query: 288 CKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSLNYLNLAENDFEKIPS 346
L SL L L L L+ L L + LP L +P L L+LA ND ++P+
Sbjct: 112 ------LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPA 165
Query: 347 SI 348
+
Sbjct: 166 GL 167
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 13/194 (6%)
Query: 176 LKRFPE-ISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSL 233
L + P+ I + +++DL ++ L S S N S L LDL+ C + L L
Sbjct: 18 LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 234 VNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRP 292
NL L+G P L SLE ++A ET ++ + I L ++ L+
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV----AHN 133
Query: 293 PLMSLKLPILF-QLQNLEYLSLVDCGITELP----ESLGRSPSLNY-LNLAENDFEKIPS 346
+ S KLP F L NL ++ L I + + L +P +N L+++ N + I
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 193
Query: 347 SIKQLSKLLFLTLR 360
Q KL LTLR
Sbjct: 194 QAFQGIKLHELTLR 207
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 133/333 (39%), Gaps = 81/333 (24%)
Query: 60 LKSLPSKNIPEH--LVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYSKQLSRIPDISLAF 116
L+ LP N + L L+ ++I +L + Q L LK LNL ++ +LS+I D + F
Sbjct: 37 LRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHN-ELSQISDQTFVF 95
Query: 117 --NIERLDLVGCASLIETHSSIQHLNKLVFLNLGH-CISLKSLPTGIN------------ 161
N+ LDL+ + + ++ L+ L+L H +S L TG+
Sbjct: 96 CTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKN 155
Query: 162 ----LDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEEL-PSSIGNLSRLVHLDLTN 216
L S ++ +LG S + LDL ++E P + +L L L N
Sbjct: 156 KILALRSEELEFLGNSS-----------LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 217 CSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIAC 276
+N +L+ EKL E+ N + LAN ++ + +
Sbjct: 205 AQ---------------LNPHLT-----EKLCWELSNTSIQNLSLANNQLLATSESTFS- 243
Query: 277 LNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNL 336
LK L QL +L Y +L D G S PSL YL+L
Sbjct: 244 -------------------GLKWTNLTQL-DLSYNNLHDVG----NGSFSYLPSLRYLSL 279
Query: 337 AENDFEKI-PSSIKQLSKLLFLTLRNCKRLQSL 368
N+ +++ P S LS L +L+L+ QS+
Sbjct: 280 EYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 280 VESLSFDRCKGRPPLMSLKLPILFQLQ-----------NLEYLSLVDCGITELPESLGRS 328
+ S +F+R P LM L L L +L+ NL+YL+L C I ++P +L
Sbjct: 162 IPSYAFNRV---PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPL 217
Query: 329 PSLNYLNLAENDFEKI-PSSIKQLSKLLFLTLRNCK 363
L L ++ N F +I P S LS L L + N +
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,280,039
Number of Sequences: 62578
Number of extensions: 654658
Number of successful extensions: 1533
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 99
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)