Query 037314
Match_columns 566
No_of_seqs 561 out of 4844
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.1E-51 4.5E-56 477.7 40.4 473 1-523 541-1030(1153)
2 PLN00113 leucine-rich repeat r 100.0 3E-34 6.6E-39 333.2 25.3 367 11-383 86-486 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.1E-33 2.3E-38 328.7 25.0 372 11-388 157-563 (968)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-31 3.9E-36 268.2 6.1 407 44-479 48-476 (873)
5 KOG4194 Membrane glycoprotein 99.9 1.2E-28 2.5E-33 248.1 4.9 341 12-363 70-427 (873)
6 PLN03210 Resistant to P. syrin 99.9 3.8E-25 8.3E-30 258.2 34.4 333 41-389 552-910 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 4.7E-30 1E-34 259.5 -5.8 341 14-369 28-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 2.3E-28 4.9E-33 247.4 -5.6 343 37-391 22-381 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 7.4E-29 1.6E-33 239.7 -8.8 266 10-289 37-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 1.4E-28 3E-33 237.8 -12.1 199 36-240 103-306 (565)
11 KOG0618 Serine/threonine phosp 99.9 1.1E-26 2.5E-31 245.5 -5.8 382 11-412 38-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.8 8E-20 1.7E-24 199.5 18.1 256 49-364 202-457 (788)
13 KOG0618 Serine/threonine phosp 99.8 4.6E-22 9.9E-27 210.9 -6.0 313 49-370 46-424 (1081)
14 KOG4237 Extracellular matrix p 99.8 1.9E-21 4E-26 188.4 -3.0 326 31-363 53-475 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1E-18 2.3E-23 190.9 16.4 258 18-342 201-458 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 5E-18 1.1E-22 186.6 13.4 245 48-342 178-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.4E-22 183.9 11.6 243 18-289 178-426 (754)
18 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.6E-20 154.8 0.7 270 74-363 2-318 (319)
19 cd00116 LRR_RI Leucine-rich re 99.5 1E-15 2.2E-20 155.3 -1.3 272 53-341 3-319 (319)
20 KOG0617 Ras suppressor protein 99.5 3E-16 6.4E-21 136.0 -5.0 154 185-369 34-189 (264)
21 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.6E-20 132.3 -3.7 167 154-350 24-194 (264)
22 KOG4237 Extracellular matrix p 99.4 4.2E-15 9.1E-20 144.7 -3.3 118 54-173 52-174 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3E-12 6.6E-17 143.4 7.8 124 48-172 523-651 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.3 3.9E-12 8.4E-17 142.6 6.5 206 58-268 511-730 (889)
25 KOG0532 Leucine-rich repeat (L 99.1 3.4E-12 7.3E-17 130.0 -5.1 208 144-363 54-271 (722)
26 COG4886 Leucine-rich repeat (L 99.1 2.2E-10 4.9E-15 119.8 7.7 177 185-369 117-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 9.1E-12 2E-16 126.9 -3.0 199 174-383 60-271 (722)
28 COG4886 Leucine-rich repeat (L 99.0 5.6E-10 1.2E-14 116.8 6.6 195 52-250 97-296 (394)
29 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.7E-15 115.4 1.4 84 90-173 118-207 (505)
30 KOG1259 Nischarin, modulator o 98.9 3.7E-10 7.9E-15 106.8 0.2 56 184-241 284-339 (490)
31 PF14580 LRR_9: Leucine-rich r 98.8 3.9E-09 8.5E-14 95.7 5.6 111 60-174 9-124 (175)
32 KOG3207 Beta-tubulin folding c 98.8 6.6E-10 1.4E-14 110.3 0.3 205 137-363 118-337 (505)
33 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.5E-14 103.5 1.0 103 254-363 283-385 (490)
34 PF14580 LRR_9: Leucine-rich r 98.8 4.8E-09 1E-13 95.1 4.1 101 256-363 20-124 (175)
35 KOG1909 Ran GTPase-activating 98.7 9.3E-10 2E-14 106.5 -2.2 91 273-363 208-309 (382)
36 KOG1909 Ran GTPase-activating 98.6 9.2E-10 2E-14 106.5 -6.1 230 112-342 26-311 (382)
37 KOG4341 F-box protein containi 98.6 1.5E-09 3.3E-14 107.3 -5.2 87 277-366 345-440 (483)
38 PRK15386 type III secretion pr 98.5 4.4E-07 9.6E-12 92.2 10.8 59 185-248 53-111 (426)
39 KOG4341 F-box protein containi 98.5 3.6E-09 7.7E-14 104.7 -4.4 83 94-176 139-229 (483)
40 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.7E-13 107.2 -2.0 240 69-343 71-319 (414)
41 PLN03150 hypothetical protein; 98.5 3.5E-07 7.6E-12 100.8 9.2 104 71-174 419-526 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 69.7 3.2 58 306-363 1-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.4 5.3E-09 1.1E-13 99.1 -7.3 150 94-243 186-350 (419)
44 KOG2120 SCF ubiquitin ligase, 98.4 4.6E-09 9.9E-14 99.5 -7.7 174 70-245 185-377 (419)
45 PLN03150 hypothetical protein; 98.4 7.1E-07 1.5E-11 98.4 7.5 105 209-318 420-527 (623)
46 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.5E-12 99.9 1.0 165 49-217 96-265 (414)
47 PF13855 LRR_8: Leucine rich r 98.3 6.5E-07 1.4E-11 66.5 3.7 56 71-126 2-59 (61)
48 PRK15386 type III secretion pr 98.2 6.5E-06 1.4E-10 83.9 9.4 69 48-125 52-121 (426)
49 KOG2982 Uncharacterized conser 98.2 5.9E-07 1.3E-11 85.4 1.1 102 49-150 46-156 (418)
50 PF12799 LRR_4: Leucine Rich r 97.9 6.9E-06 1.5E-10 56.2 2.5 38 307-344 2-39 (44)
51 PF12799 LRR_4: Leucine Rich r 97.9 8.1E-06 1.7E-10 55.9 2.8 42 329-371 1-42 (44)
52 KOG1859 Leucine-rich repeat pr 97.8 5.8E-07 1.3E-11 94.8 -6.8 124 209-342 166-292 (1096)
53 KOG1859 Leucine-rich repeat pr 97.6 4.6E-06 9.9E-11 88.3 -2.8 152 200-363 102-265 (1096)
54 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.4E-10 85.6 1.5 151 207-361 122-284 (699)
55 KOG2982 Uncharacterized conser 97.5 6.3E-05 1.4E-09 71.9 3.3 83 306-389 199-285 (418)
56 KOG3665 ZYG-1-like serine/thre 97.3 6.8E-05 1.5E-09 82.8 1.0 129 139-268 121-263 (699)
57 KOG4579 Leucine-rich repeat (L 97.3 1.8E-05 3.9E-10 67.1 -3.1 104 233-363 29-134 (177)
58 KOG1644 U2-associated snRNP A' 97.3 0.0006 1.3E-08 61.9 6.2 103 69-173 41-150 (233)
59 KOG1947 Leucine rich repeat pr 97.2 5.8E-05 1.2E-09 81.0 -1.1 106 139-244 187-308 (482)
60 COG5238 RNA1 Ran GTPase-activa 97.0 0.00016 3.6E-09 68.3 0.2 232 48-290 30-315 (388)
61 KOG4579 Leucine-rich repeat (L 97.0 4.7E-05 1E-09 64.6 -3.3 107 50-158 29-140 (177)
62 COG5238 RNA1 Ran GTPase-activa 97.0 0.00012 2.7E-09 69.1 -1.0 58 306-363 185-253 (388)
63 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.8E-08 59.9 4.9 105 46-150 40-150 (233)
64 KOG1947 Leucine rich repeat pr 96.7 0.00014 3.1E-09 77.9 -3.2 236 91-366 186-441 (482)
65 PF13306 LRR_5: Leucine rich r 96.4 0.013 2.8E-07 50.4 7.4 105 8-125 2-112 (129)
66 KOG2739 Leucine-rich acidic nu 96.2 0.0026 5.6E-08 60.3 2.4 80 71-151 44-127 (260)
67 KOG2739 Leucine-rich acidic nu 96.2 0.0033 7.1E-08 59.6 2.6 62 112-174 61-127 (260)
68 PF07725 LRR_3: Leucine Rich R 95.6 0.0083 1.8E-07 32.9 1.7 20 71-90 1-20 (20)
69 PF00560 LRR_1: Leucine Rich R 95.4 0.0056 1.2E-07 34.8 0.5 19 331-349 2-20 (22)
70 KOG2123 Uncharacterized conser 95.1 0.00046 9.9E-09 65.6 -7.2 99 16-122 17-123 (388)
71 PF13306 LRR_5: Leucine rich r 94.4 0.17 3.6E-06 43.3 7.4 52 70-124 12-66 (129)
72 KOG2123 Uncharacterized conser 94.2 0.0025 5.3E-08 60.8 -4.9 80 50-130 21-102 (388)
73 PF13504 LRR_7: Leucine rich r 94.1 0.029 6.2E-07 29.7 1.2 15 330-344 2-16 (17)
74 PF00560 LRR_1: Leucine Rich R 94.0 0.025 5.5E-07 32.1 0.9 18 72-89 2-19 (22)
75 PF13504 LRR_7: Leucine rich r 92.2 0.089 1.9E-06 27.8 1.3 17 306-322 1-17 (17)
76 KOG4308 LRR-containing protein 90.8 0.0014 3E-08 69.5 -12.7 163 202-364 110-302 (478)
77 smart00369 LRR_TYP Leucine-ric 89.5 0.29 6.3E-06 28.9 1.9 20 328-347 1-20 (26)
78 smart00370 LRR Leucine-rich re 89.5 0.29 6.3E-06 28.9 1.9 20 328-347 1-20 (26)
79 KOG3864 Uncharacterized conser 83.3 0.23 5E-06 45.5 -1.2 36 327-362 149-186 (221)
80 KOG4308 LRR-containing protein 82.9 0.0053 1.1E-07 65.2 -13.9 90 253-342 202-303 (478)
81 smart00370 LRR Leucine-rich re 82.3 0.84 1.8E-05 26.8 1.3 19 70-88 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 82.3 0.84 1.8E-05 26.8 1.3 19 70-88 2-20 (26)
83 KOG3864 Uncharacterized conser 81.9 0.81 1.8E-05 42.1 1.7 89 62-150 92-186 (221)
84 smart00364 LRR_BAC Leucine-ric 77.9 1.4 3E-05 26.1 1.2 17 330-346 3-19 (26)
85 KOG0473 Leucine-rich repeat pr 77.7 0.058 1.3E-06 50.4 -7.0 82 68-150 40-121 (326)
86 KOG0473 Leucine-rich repeat pr 75.9 0.07 1.5E-06 49.8 -7.0 63 302-364 61-123 (326)
87 smart00367 LRR_CC Leucine-rich 67.2 3.8 8.3E-05 24.0 1.5 16 351-366 1-16 (26)
88 smart00365 LRR_SD22 Leucine-ri 66.1 5.4 0.00012 23.7 1.9 16 329-344 2-17 (26)
89 PF13516 LRR_6: Leucine Rich r 61.5 3.3 7.2E-05 23.7 0.4 13 116-128 2-14 (24)
90 KOG3763 mRNA export factor TAP 51.6 8.6 0.00019 40.9 1.8 63 68-131 216-285 (585)
91 smart00368 LRR_RI Leucine rich 50.1 13 0.00028 22.3 1.7 14 329-342 2-15 (28)
92 PF05725 FNIP: FNIP Repeat; I 41.4 51 0.0011 22.1 3.8 35 45-79 9-43 (44)
93 KOG3763 mRNA export factor TAP 30.5 23 0.00049 37.9 0.9 61 306-367 218-285 (585)
94 KOG4242 Predicted myosin-I-bin 27.1 2.7E+02 0.0059 29.6 7.8 80 49-129 215-312 (553)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-51 Score=477.71 Aligned_cols=473 Identities=33% Similarity=0.531 Sum_probs=374.3
Q ss_pred CCCcceeecCHHHHhcCcCCcEEEEeecC-CCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCC
Q 037314 1 MSKVKEVCLNPNTFTKMHRLRFFKFYNIF-AGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPH 79 (566)
Q Consensus 1 ~s~~~~~~~~~~~f~~m~~Lr~L~l~~~~-~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~ 79 (566)
+++++++.++.+||++|++|++|++++.. ...+.....+|+++..+|++||+|+|.+|+++++|..|.+++|++|+|++
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~ 620 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG 620 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC
Confidence 45677889999999999999999998742 12245667899999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCc
Q 037314 80 SNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTG 159 (566)
Q Consensus 80 ~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~ 159 (566)
|+++.+|.+++.+++|+.|+|+++..++.+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|+.++.+|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCccc-------ccccccCCCC
Q 037314 160 INLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKS-------VSSSLCNLKS 232 (566)
Q Consensus 160 ~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~-------lp~~l~~l~~ 232 (566)
+++++|+.|++++|..++.+|....+|+.|++++|.++.+|..+ .+++|++|.+.++..... .+......++
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 89999999999999999999999899999999999999999876 688999999987543211 1112233568
Q ss_pred CcEEeccCCcCCcccccccCCCCccceeccCCc-cccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEE
Q 037314 233 LVNLYLSGCLKLEKLPEEIGNLESLEVMLANET-AISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYL 311 (566)
Q Consensus 233 L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L 311 (566)
|+.|++++|.....+|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|..... +|. ..++|+.|
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~--~~~nL~~L 851 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT-----FPD--ISTNISDL 851 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc-----ccc--cccccCEe
Confidence 889999998888888888888888888888775 466777655 677888888888765443 221 12567777
Q ss_pred ecccCCCcccCCCCCCCCCCCEEeccCCC-CeecCcchhcCCCCcEecccccccCCcCC--CCCCCCeEeecCCcCcccc
Q 037314 312 SLVDCGITELPESLGRSPSLNYLNLAEND-FEKIPSSIKQLSKLLFLTLRNCKRLQSLP--ELPCGSTIFARHCTSLETL 388 (566)
Q Consensus 312 ~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~i~~l~~L~~L~L~~c~~L~~lp--~lp~~~~L~~~~c~~L~~l 388 (566)
+|++|.+.++|..+..+++|+.|+|++|+ ++.+|..+..+++|+.|++++|..|+.++ ..|.. ...+.+.. .
T Consensus 852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~-~~~~~~n~-~--- 926 (1153)
T PLN03210 852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSE-VAMATDNI-H--- 926 (1153)
T ss_pred ECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchh-hhhhcccc-c---
Confidence 77777777777777777777777777755 66777667777777777777777666543 11111 00000000 0
Q ss_pred cCcchhcccccccceeeEeeCCCCCChhhhhhhHHHHHHHHHHHhhhcccCCCccccCCCCCCCCceeecCCCCCCCccc
Q 037314 389 SSLSTLFTRSSELWQAFDFCNCFKLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFS 468 (566)
Q Consensus 389 ~~~~~~~~~~~~~l~~l~~~~C~~L~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~ 468 (566)
...+....+.|.+|++|++.+. + +. + ..+..+++||.++|+||.
T Consensus 927 --------~~~p~~~~l~f~nC~~L~~~a~--l-----------~~------~---------~~~~~~~l~g~evp~~f~ 970 (1153)
T PLN03210 927 --------SKLPSTVCINFINCFNLDQEAL--L-----------QQ------Q---------SIFKQLILSGEEVPSYFT 970 (1153)
T ss_pred --------ccCCchhccccccccCCCchhh--h-----------cc------c---------ccceEEECCCccCchhcc
Confidence 1112234467899999987553 1 00 0 012468999999999999
Q ss_pred cCCCCceEE-EECCCCCCCCccceEEEEEEEeccCCC----ccceEEEEEEEeCCCCeEE
Q 037314 469 FQSMGSSVT-LELPPGWFNKNFVGFALCAIAPEYHGR----TRGLYVQCKVKTKDGDRHV 523 (566)
Q Consensus 469 ~~~~g~~~~-i~lp~~~~~~~~~g~~~c~v~~~~~~~----~~~~~~~c~~~~~~~~~~~ 523 (566)
||+.|++++ |.+|+.|+...|.||++|+|+++.... ...+.|.|+|++++|+.++
T Consensus 971 hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 1030 (1153)
T PLN03210 971 HRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD 1030 (1153)
T ss_pred CCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc
Confidence 999999998 999999998889999999999876522 2246777888888887654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-34 Score=333.24 Aligned_cols=367 Identities=19% Similarity=0.257 Sum_probs=272.5
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCcc-CCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCc-ccccc
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLE-SLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNG 88 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~ 88 (566)
+.+|.++++|+.|++++ +.....+|.++. .+ ++||+|++++|.+....+...+++|++|++++|.+. .+|..
T Consensus 86 ~~~~~~l~~L~~L~Ls~-----n~~~~~ip~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 86 SSAIFRLPYIQTINLSN-----NQLSGPIPDDIFTTS-SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred ChHHhCCCCCCEEECCC-----CccCCcCChHHhccC-CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH
Confidence 46899999999999998 344456777655 55 589999999998874333446789999999999987 67888
Q ss_pred CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCcc
Q 037314 89 VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLK 166 (566)
Q Consensus 89 ~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~ 166 (566)
+..+++|++|+|++|.+...+|. ++++++|++|+|++|...+.+|..++.+++|++|++++|.....+|..+ .+++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 89999999999999988777775 8889999999999998888888889999999999999877666788766 789999
Q ss_pred EEEecCCCCCCcCCccc---CCCCEEecCCCCCc-ccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCc
Q 037314 167 VLYLGGCSNLKRFPEIS---CNIEHLDLKETAIE-ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCL 242 (566)
Q Consensus 167 ~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~ 242 (566)
+|++++|...+.+|..+ .+|++|++++|.+. .+|..+..+++|++|++++|...+.+|..+.++++|+.|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 99999887766777544 46788888888875 577788888888888888888888888888888888888888888
Q ss_pred CCcccccccCCCCccceeccCCcccc-ccCcccccCCCCCEEEccCCCCCCCCCC-------------------CCccc-
Q 037314 243 KLEKLPEEIGNLESLEVMLANETAIS-QVPPSIACLNRVESLSFDRCKGRPPLMS-------------------LKLPI- 301 (566)
Q Consensus 243 ~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~~l~~- 301 (566)
..+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+. ..+|.
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 88888888888888888888888887 6677788888888888888764322110 01222
Q ss_pred ccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCCC---CCCCCe
Q 037314 302 LFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLPE---LPCGST 376 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~~~ 376 (566)
+..+++|+.|++++|+++. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+..+.+|. .+.++.
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~ 479 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence 4445556666666665554 4555555666666666666654 3344455566666666666665555553 223355
Q ss_pred EeecCCc
Q 037314 377 IFARHCT 383 (566)
Q Consensus 377 L~~~~c~ 383 (566)
|++.+|.
T Consensus 480 L~ls~n~ 486 (968)
T PLN00113 480 LDLSRNQ 486 (968)
T ss_pred EECcCCc
Confidence 5555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=328.65 Aligned_cols=372 Identities=22% Similarity=0.288 Sum_probs=251.9
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCC-CCCCCC-CCCCeEEEEcCCCCCc-cccc
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLK-SLPSKN-IPEHLVSLEMPHSNIE-QLWN 87 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~l~~ 87 (566)
+..|..+++||.|++++ +.....+|..+..++ +|++|++++|.+. .+|..+ .+++|++|++++|++. .+|.
T Consensus 157 p~~~~~l~~L~~L~L~~-----n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGG-----NVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ChHHhcCCCCCEEECcc-----CcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 46788899999999988 344556788888875 8999999998876 566665 7889999999999887 6788
Q ss_pred cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCc
Q 037314 88 GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSL 165 (566)
Q Consensus 88 ~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L 165 (566)
.+..+++|++|++++|.+...+|. ++.+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..+ .+++|
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 888999999999999887777765 8888899999999888877888888888899999998876656677655 78888
Q ss_pred cEEEecCCCCCCcCCccc---CCCCEEecCCCCCc-ccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCC
Q 037314 166 KVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIE-ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGC 241 (566)
Q Consensus 166 ~~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~ 241 (566)
+.|++++|.....+|..+ .+|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 888888877666666443 46777788777776 56767777777777777777666666666666666666666665
Q ss_pred cCCcccccccCCCCccceeccCCcccc-ccCcccccCCCCCEEEccCCCCCCCCCC-------------------CCccc
Q 037314 242 LKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIACLNRVESLSFDRCKGRPPLMS-------------------LKLPI 301 (566)
Q Consensus 242 ~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~~l~~ 301 (566)
...+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|........ ..+|.
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 555555555555555555555555554 3444444455555555544432211100 01222
Q ss_pred ccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCC----CCCCCC
Q 037314 302 LFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGS 375 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~ 375 (566)
....++|+.|++++|++.. +|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.....+| .++.++
T Consensus 471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 2233556666666666654 4555666666666666666654 556666666666666666666554444 345556
Q ss_pred eEeecCCcCcccc
Q 037314 376 TIFARHCTSLETL 388 (566)
Q Consensus 376 ~L~~~~c~~L~~l 388 (566)
.|++.+|.-...+
T Consensus 551 ~L~Ls~N~l~~~~ 563 (968)
T PLN00113 551 QLDLSQNQLSGEI 563 (968)
T ss_pred EEECCCCcccccC
Confidence 6666655443333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-31 Score=268.24 Aligned_cols=407 Identities=21% Similarity=0.230 Sum_probs=323.6
Q ss_pred cCCCccceEEEeCCccCCCCCC----CCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCCCCCCC-C
Q 037314 44 ESLFNELRYFYWDGYPLKSLPS----KNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPDISLAF-N 117 (566)
Q Consensus 44 ~~l~~~Lr~L~l~~~~l~~lp~----~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~-~ 117 (566)
...|..-+.|+.++..+..+.. .+-+..-+.|++++|++..+ +.+|.++++|+.+++..|. ++.+|.++... +
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGH 126 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccc
Confidence 4446678899999998887642 34677889999999999976 5778999999999999987 78899987765 5
Q ss_pred ccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcC---CcccCCCCEEecC
Q 037314 118 IERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRF---PEISCNIEHLDLK 192 (566)
Q Consensus 118 L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~---~~~~~~L~~L~L~ 192 (566)
|+.|+|..|.+...-.+++..++.|+.|||+. +.+..+|... .-.++++|+|++|..-.-- -+.+.+|..|.|+
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 99999999988877778899999999999999 6777777644 5678999999998654321 2334488899999
Q ss_pred CCCCcccCcc-ccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccC
Q 037314 193 ETAIEELPSS-IGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVP 271 (566)
Q Consensus 193 ~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~ 271 (566)
.|+|+.+|.. |.++++|+.|+|..|+.-..-...|.+|++|+.|.+..|.....-...|..|.++++|++..|++..+.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 9999999975 666999999999998765555668999999999999998877766778999999999999999999885
Q ss_pred c-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCcc-h
Q 037314 272 P-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPSS-I 348 (566)
Q Consensus 272 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~-i 348 (566)
. ++.+++.|+.|+++.|... .+....+..+++|++|+|++|++++++ ..+..++.|++|+|++|.+..+.+. +
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~----rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQ----RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred cccccccchhhhhccchhhhh----eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 5 7889999999999999732 234445777899999999999999986 5688899999999999999988765 7
Q ss_pred hcCCCCcEecccccccCCcCC-------CCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCCCCCChhhhhhh
Q 037314 349 KQLSKLLFLTLRNCKRLQSLP-------ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNCFKLNRNEVGEI 421 (566)
Q Consensus 349 ~~l~~L~~L~L~~c~~L~~lp-------~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C~~L~~~~~~~i 421 (566)
..+++|+.|||++|..-..|. .+|+++.|.+.+ ..++.++.-. ..+.+.++.|+ |..|++.+|
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA---fsgl~~LE~Ld------L~~NaiaSI 431 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA---FSGLEALEHLD------LGDNAIASI 431 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhh---hccCcccceec------CCCCcceee
Confidence 889999999999998554443 477777777776 3566665321 13444555554 888899999
Q ss_pred HHHHHHHHHHHhhhcccCCCccccCCCCCCCCceeecCCCCCCCccccCCCCceEEEE
Q 037314 422 VEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFSFQSMGSSVTLE 479 (566)
Q Consensus 422 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~~~~i~ 479 (566)
.+.||..+ .+.++... ...+.|+|.- .+.+.|+..+.-.++|...
T Consensus 432 q~nAFe~m-~Lk~Lv~n-----------SssflCDCql-~Wl~qWl~~~~lq~sv~a~ 476 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMN-----------SSSFLCDCQL-KWLAQWLYRRKLQSSVIAK 476 (873)
T ss_pred cccccccc-hhhhhhhc-----------ccceEEeccH-HHHHHHHHhcccccceeee
Confidence 99999877 55552211 2234699876 5788888887777777653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-28 Score=248.14 Aligned_cols=341 Identities=21% Similarity=0.221 Sum_probs=226.2
Q ss_pred HHHhcCcCC--cEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCcccc-c
Q 037314 12 NTFTKMHRL--RFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLW-N 87 (566)
Q Consensus 12 ~~f~~m~~L--r~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~-~ 87 (566)
.++.++--. +.|++++ |.....-+.++..+| +|+.+.+..|.++.+|... ...+|+.|+|.+|.|..+. +
T Consensus 70 ~~l~g~lp~~t~~Ldlsn-----Nkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 70 SRLKGFLPSQTQTLDLSN-----NKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred cccCCcCccceeeeeccc-----cccccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHH
Confidence 444444333 4477777 233333345566666 7888888888888888665 4456888888888887664 4
Q ss_pred cCCCCCCCcEEecCCCCCCCC-CCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCC
Q 037314 88 GVQNLAALKRLNLSYSKQLSR-IPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDS 164 (566)
Q Consensus 88 ~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~ 164 (566)
.++.++.|+.||||.|.+... .|.|..-.++++|+|++|.+...--..|..+.+|..|.|+. +.++.+|... ++++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcch
Confidence 567778888888887764432 23466667788888888777666566777777888888877 5677777655 4778
Q ss_pred ccEEEecCCCCCCc-C--CcccCCCCEEecCCCCCcccCcc-ccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccC
Q 037314 165 LKVLYLGGCSNLKR-F--PEISCNIEHLDLKETAIEELPSS-IGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSG 240 (566)
Q Consensus 165 L~~L~L~~~~~l~~-~--~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~ 240 (566)
|+.|+|..|..-.. . -..+.+|+.|.|..|.|..+.+. |..+.++++|+|..|+....-..++.+|++|+.|++|.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 88888777643211 1 12334677777777777777654 56677777777777766665566677777777777777
Q ss_pred CcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCc
Q 037314 241 CLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGIT 319 (566)
Q Consensus 241 ~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~ 319 (566)
|.+...-++...-.++|++|+++.|+++.+++ ++..+..|++|.+++|.... ..--.+.++++|++|+|++|.+.
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~----l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH----LAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH----HHhhHHHHhhhhhhhcCcCCeEE
Confidence 76666666666667777777777777777754 56667777777777776322 01112556677777777777665
Q ss_pred c-cC---CCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccc
Q 037314 320 E-LP---ESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 320 ~-lp---~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
- +. ..+..+++|+.|++.||+++.+|.. +.++..|++|+|.+|.
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 4 22 3355677777777777777777653 6677777777777665
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=3.8e-25 Score=258.15 Aligned_cols=333 Identities=24% Similarity=0.362 Sum_probs=266.3
Q ss_pred CCccCCCccceEEEeCCccC-------CCCCCCC--CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC
Q 037314 41 RYLESLFNELRYFYWDGYPL-------KSLPSKN--IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD 111 (566)
Q Consensus 41 ~~l~~l~~~Lr~L~l~~~~l-------~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~ 111 (566)
..|..++ +|++|.+..... ..+|..+ -+.+|+.|++.++.++.+|..+ ...+|+.|++.+|.+......
T Consensus 552 ~aF~~m~-~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMR-NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCc-cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 4567774 899999865532 1466665 4568999999999999999888 578999999999985443344
Q ss_pred CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCcc--cCCCCE
Q 037314 112 ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEI--SCNIEH 188 (566)
Q Consensus 112 l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~--~~~L~~ 188 (566)
+..+++|++|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ ++++|+.|++++|..++.+|.. ..+|++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 88899999999999988888874 8889999999999999999999988 8999999999999999999874 458999
Q ss_pred EecCCCC-CcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcc-------cccccCCCCcccee
Q 037314 189 LDLKETA-IEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEK-------LPEEIGNLESLEVM 260 (566)
Q Consensus 189 L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~-------~p~~l~~l~~L~~L 260 (566)
|++++|. +..+|.. ..+|+.|+++++. ...+|..+ .+++|++|.+.++..... .+......++|+.|
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 9999874 4556643 4689999999876 46677655 688999999887543211 11122335789999
Q ss_pred ccCCcc-ccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccC
Q 037314 261 LANETA-ISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAE 338 (566)
Q Consensus 261 ~l~~n~-l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~ 338 (566)
++++|. +.++|.+++++++|+.|++++|..... +|....+++|+.|++++|.... +|.. .++|+.|+|++
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 999885 458999999999999999999987654 4554478999999999986543 5543 46899999999
Q ss_pred CCCeecCcchhcCCCCcEecccccccCCcCCC----CCCCCeEeecCCcCccccc
Q 037314 339 NDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPE----LPCGSTIFARHCTSLETLS 389 (566)
Q Consensus 339 n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~L~~~~c~~L~~l~ 389 (566)
|.++.+|.++..+++|+.|++++|+.++.+|. ++.++.+++.+|++|+.++
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999999999999999999999999874 4444667777777776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.7e-30 Score=259.48 Aligned_cols=341 Identities=24% Similarity=0.310 Sum_probs=288.5
Q ss_pred HhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCc--cccccCC
Q 037314 14 FTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIE--QLWNGVQ 90 (566)
Q Consensus 14 f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~--~l~~~~~ 90 (566)
...|+.++.|++.. .....+|+.+..+ .+|..|.+..|.+.++-... .++.|+.+++..|+++ .+|..+.
T Consensus 28 v~qMt~~~WLkLnr------t~L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR------TKLEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred HHHhhheeEEEech------hhhhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 34689999999976 2345677777777 48899999999888777555 7889999999999988 6899999
Q ss_pred CCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEE
Q 037314 91 NLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLY 169 (566)
Q Consensus 91 ~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 169 (566)
.+..|..||||+|++...+..+..++|+-.|+|++|++...-.+.+-+++.|-+|+|++ +.+..+|+-+ .+..|++|.
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhh
Confidence 99999999999998544444588999999999999876554445678899999999998 7889999888 899999999
Q ss_pred ecCCCCC----CcCCcccCCCCEEecCCCC--CcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcC
Q 037314 170 LGGCSNL----KRFPEISCNIEHLDLKETA--IEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLK 243 (566)
Q Consensus 170 L~~~~~l----~~~~~~~~~L~~L~L~~~~--i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~ 243 (566)
|++|... +.+|. ...|+.|.++++. +..+|.++..+.+|..+|++. +.+..+|..+.++++|+.|++|+|.
T Consensus 180 Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~- 256 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNK- 256 (1255)
T ss_pred cCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCc-
Confidence 9998743 34443 3467888888876 457999999999999999997 4677899999999999999999965
Q ss_pred CcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccC
Q 037314 244 LEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELP 322 (566)
Q Consensus 244 l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp 322 (566)
++.+.-..+...+|++|+++.|+++.+|..+..+++|+.|...+|+..- ..+|+ ++.+..|+.+..++|.+.-+|
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F----eGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF----EGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc----cCCccchhhhhhhHHHHhhccccccCc
Confidence 4555556677889999999999999999999999999999999988432 34677 899999999999999999999
Q ss_pred CCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCC
Q 037314 323 ESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 323 ~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
+.+..|..|+.|.|+.|.+.++|+.|.-++-|+.||+..|++|.--|
T Consensus 333 EglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999999999999999999999999999999999886444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.3e-28 Score=247.38 Aligned_cols=343 Identities=22% Similarity=0.320 Sum_probs=285.6
Q ss_pred EEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCC-CC-CCCC
Q 037314 37 VRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLS-RI-PDIS 113 (566)
Q Consensus 37 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~-~~-p~l~ 113 (566)
..+|.+...+. .+++|.+.+..+..+|... .+.+|.+|.+.+|++..+-..+..++.|+.+++.+|++.. .+ +++.
T Consensus 22 ~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 22 DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 56888888875 8999999999999999776 8899999999999999998888999999999999887543 34 4688
Q ss_pred CCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCccc---CCCCE
Q 037314 114 LAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEIS---CNIEH 188 (566)
Q Consensus 114 ~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~---~~L~~ 188 (566)
.+..|..|+|+.|+ +.++|..+..-+++-.|+|++ +++..+|..+ ++..|-.|||++| .++.+|... .+|++
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence 89999999999975 678898899999999999998 7788898866 8888999999985 456666543 47888
Q ss_pred EecCCCCCcccC-ccccCCCCCcEEeccCCCC-cccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcc
Q 037314 189 LDLKETAIEELP-SSIGNLSRLVHLDLTNCSR-LKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETA 266 (566)
Q Consensus 189 L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~-l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~ 266 (566)
|+|++|.+..+. ..+..++.|+.|++++.+. +..+|.++..+.+|..+++|.| .+..+|+.+.++++|+.|++++|.
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc
Confidence 899988765321 1122467788888887654 4578888999999999999874 567788999999999999999999
Q ss_pred ccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcc--cCCCCCCCCCCCEEeccCCCCee
Q 037314 267 ISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITE--LPESLGRSPSLNYLNLAENDFEK 343 (566)
Q Consensus 267 l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~ 343 (566)
++++....+.-.+|++|+++.|.... +|. +..+++|+.|.+.+|+++- ||+.++.+..|+.+..++|.++-
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~------LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTV------LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhcc------chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 99888888888899999999988654 666 8899999999999998764 99999999999999999999999
Q ss_pred cCcchhcCCCCcEecccccccCCcCCC----CCCCCeEeecCCcCcccccCc
Q 037314 344 IPSSIKQLSKLLFLTLRNCKRLQSLPE----LPCGSTIFARHCTSLETLSSL 391 (566)
Q Consensus 344 lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~L~~~~c~~L~~l~~~ 391 (566)
+|++++.+..|+.|.|++|+ |-.+|+ +|-++.|++...++|.--+.+
T Consensus 331 VPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred CchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99999999999999999887 666775 677789999999988766544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=7.4e-29 Score=239.65 Aligned_cols=266 Identities=24% Similarity=0.269 Sum_probs=222.4
Q ss_pred CHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCcccccc
Q 037314 10 NPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNG 88 (566)
Q Consensus 10 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~ 88 (566)
.+++.-.-..|+.|.+++ +...++.+++..++ .+..|..+.+.+..+|+.+ .+..++.|+.++|++.++|+.
T Consensus 37 e~e~wW~qv~l~~lils~------N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~ 109 (565)
T KOG0472|consen 37 EGENWWEQVDLQKLILSH------NDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ 109 (565)
T ss_pred chhhhhhhcchhhhhhcc------CchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH
Confidence 344455556677778877 34566777888886 7999999999999999877 888999999999999999999
Q ss_pred CCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccE
Q 037314 89 VQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKV 167 (566)
Q Consensus 89 ~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 167 (566)
+..+..|+.++.++|......++++.+..|+.++..+|. ...+|..++++.+|..|++.+ ++++.+|... +++.|++
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKH 187 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHh
Confidence 999999999999999977777789999999999988765 556788899999999999999 6677777655 8999999
Q ss_pred EEecCCCCCCcCCcccCCCC---EEecCCCCCcccCccccCCCCCcEEeccCCCCccccccccc-CCCCCcEEeccCCcC
Q 037314 168 LYLGGCSNLKRFPEISCNIE---HLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLC-NLKSLVNLYLSGCLK 243 (566)
Q Consensus 168 L~L~~~~~l~~~~~~~~~L~---~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~ls~~~~ 243 (566)
|+...| .++.+|+..+.|+ .|+|..|+|..+| .|..+..|++|+++.| ..+.+|..+. +++++..||+.+| +
T Consensus 188 ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 188 LDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred cccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-c
Confidence 998773 5778887776554 4588999999999 6899999999999875 4566676554 8999999999984 6
Q ss_pred CcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCC
Q 037314 244 LEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCK 289 (566)
Q Consensus 244 l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~ 289 (566)
++.+|+.+.-+++|+.||+++|.++.+|.+++++ .|+.|.+.||+
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 7888999999999999999999999999999999 89999888885
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-28 Score=237.80 Aligned_cols=199 Identities=26% Similarity=0.280 Sum_probs=112.0
Q ss_pred eEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCC
Q 037314 36 KVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISL 114 (566)
Q Consensus 36 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~ 114 (566)
...+|+.+..++ +++.|+++.+.++.+|+.+ .+..|..|+..+|++..+|+++..+.+|..+++.+|......|+.-.
T Consensus 103 ls~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 103 LSELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred HhhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 345666666665 6777777777777777655 66677777777777777777777777777777777765555555444
Q ss_pred CCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCccc----CCCCEEe
Q 037314 115 AFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEIS----CNIEHLD 190 (566)
Q Consensus 115 l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~----~~L~~L~ 190 (566)
++.|++|+...| .++.+|+.++.+.+|+.|+++. +++..+|+.-.+..|++|+++.|. ++.+|... ..+..|+
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccH-HHhhHHHHhcccccceeee
Confidence 666777766554 3556677777777777777766 556666643344444444444422 22233211 1333344
Q ss_pred cCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccC
Q 037314 191 LKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSG 240 (566)
Q Consensus 191 L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~ 240 (566)
|.+|+++++|..+..+++|.+||+++|. ...+|.+++++ .|+.|.+.|
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcC
Confidence 4444444444444444444444444422 23334344444 344443333
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-26 Score=245.45 Aligned_cols=382 Identities=21% Similarity=0.242 Sum_probs=283.3
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCccccccC
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGV 89 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~ 89 (566)
-++..+.-+|+.|++++ +....+|..+..++ +|+.|.++.|-+.++|... ++.+|++|.|..|.+..+|.++
T Consensus 38 l~~~~~~v~L~~l~lsn------n~~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSN------NQISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred hHHhhheeeeEEeeccc------cccccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH
Confidence 44555555699999998 34567888888886 8999999999999999665 9999999999999999999999
Q ss_pred CCCCCCcEEecCCCCCCCCCCCCCCCCC-------------------ccEEEeeCCCCccccchhhhhcccCcEEecCCC
Q 037314 90 QNLAALKRLNLSYSKQLSRIPDISLAFN-------------------IERLDLVGCASLIETHSSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 90 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~-------------------L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c 150 (566)
..+++|++||+++|.+...++-+..++. .+.+++..+...+.++..+..+.. .|+|++|
T Consensus 111 ~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 9999999999999986544332333333 445555555555555555555555 5777664
Q ss_pred CCC----------CccCC--------cCCCCCccEEEecCCCCCCcCCc-ccCCCCEEecCCCCCcccCccccCCCCCcE
Q 037314 151 ISL----------KSLPT--------GINLDSLKVLYLGGCSNLKRFPE-ISCNIEHLDLKETAIEELPSSIGNLSRLVH 211 (566)
Q Consensus 151 ~~l----------~~lp~--------~~~l~~L~~L~L~~~~~l~~~~~-~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 211 (566)
... +.+-. .+..++|+.|+.+.|...+..+. ...+|++++++.+.+..+|++++.+.+|+.
T Consensus 189 ~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 189 EMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceE
Confidence 433 11100 01345566666666665544333 234899999999999999999999999999
Q ss_pred EeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccc----------------
Q 037314 212 LDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIA---------------- 275 (566)
Q Consensus 212 L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~---------------- 275 (566)
+++..|.. ..+|..+....+|+.|.+..| .++.+|...+.+++|++|++..|.+..+|+.+.
T Consensus 269 l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 99999766 778888888888888888775 456677778888889999998888887776322
Q ss_pred ----------cCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCCCCCCCCEEeccCCCCeec
Q 037314 276 ----------CLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 276 ----------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 344 (566)
..+.|+.|++.+|... +..+|.+.++.+|+.|+|++|++..+|+ .+..++.|++|+||||.++++
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Lt----d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLT----DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCccc----ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 1233445555555533 3457788999999999999999999995 578999999999999999999
Q ss_pred CcchhcCCCCcEecccccccCCcCCC---CCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCCCC
Q 037314 345 PSSIKQLSKLLFLTLRNCKRLQSLPE---LPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNCFK 412 (566)
Q Consensus 345 p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C~~ 412 (566)
|..+..+++|++|...+|. +.++|+ +|.++.+++ .|..|..+-...... .+.+++|++++=..
T Consensus 423 p~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p---~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALP---SPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec-ccchhhhhhhhhhCC---CcccceeeccCCcc
Confidence 9999999999999998876 777886 455577776 456666655443221 16788888776543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8e-20 Score=199.55 Aligned_cols=256 Identities=19% Similarity=0.214 Sum_probs=147.8
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCAS 128 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 128 (566)
.-..|+++.+.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.+. .+|.+ .++|+.|++.+|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCch
Confidence 45567777777777776553 4777778877777777653 467777777777543 45542 35677777777653
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSR 208 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 208 (566)
..+|.. ..+|+.|++++ +.++.+|. ..++|+.|++++| .+..+|....+|+.|++++|.+..+|.. ..+
T Consensus 275 -~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~ 343 (788)
T PRK15387 275 -THLPAL---PSGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSG 343 (788)
T ss_pred -hhhhhc---hhhcCEEECcC-Cccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccc
Confidence 333332 24566777776 35666665 2456777777665 3444555555666666666666666541 135
Q ss_pred CcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCC
Q 037314 209 LVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRC 288 (566)
Q Consensus 209 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~ 288 (566)
|+.|++++|... .+|.. ..+|+.|++++|.. ..+|.. ..+|+.|++++|.++.+|..
T Consensus 344 Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~Lt~LP~l--------------- 400 (788)
T PRK15387 344 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLTSLPVL--------------- 400 (788)
T ss_pred cceEecCCCccC-CCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCcccCCCCc---------------
Confidence 556666554332 23321 12344444444332 223322 12344444444444443321
Q ss_pred CCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEeccccccc
Q 037314 289 KGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKR 364 (566)
Q Consensus 289 ~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 364 (566)
.++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|+.
T Consensus 401 ----------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 401 ----------------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ----------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 23566667777766666643 2356667777777777777777777777777777663
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=4.6e-22 Score=210.89 Aligned_cols=313 Identities=22% Similarity=0.204 Sum_probs=218.6
Q ss_pred cceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 127 (566)
+|+.|+++.|.+.+.|..+ .+.+|+.|+++.|.|..+|....++.+|+++.|.+|.....+..++.+.+|++|++++|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 4888888888888888766 778888888888888888888888888888888887644333348888888888888875
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCE-EecCCCC-----------
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEH-LDLKETA----------- 195 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~-L~L~~~~----------- 195 (566)
+ +.+|.-+..+..++.+..++|-++..++... ++.+++..+.....++....++++ |+|..|+
T Consensus 126 f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 126 F-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred c-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccc
Confidence 4 4456556666666666666542332222211 222233222222222222222222 2222222
Q ss_pred ------------------------------CcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCc
Q 037314 196 ------------------------------IEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLE 245 (566)
Q Consensus 196 ------------------------------i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~ 245 (566)
+..+-. .....+|++++++.+ .+..+|.++..+.+|+.++..+|.. .
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~ 277 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-V 277 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchh-hhhcchHHHHhcccceEecccchhH-H
Confidence 221100 122357778888774 3456678888888999998888665 7
Q ss_pred ccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCC-------------------CCCcccc--cC
Q 037314 246 KLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLM-------------------SLKLPIL--FQ 304 (566)
Q Consensus 246 ~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-------------------~~~l~~~--~~ 304 (566)
.+|..+..+.+|+.|.+..|.+..+|+....++.|++|++..|....-.. -...|.. ..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 77888888889999999999999999988999999999999887432110 0011221 23
Q ss_pred CCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccccCCcCCC
Q 037314 305 LQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
++.|+.|.+.+|.+++ .-+.+.+..+|+.|+|++|.+.++|++ +.++..|++|+|++|+ |+.||+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~ 424 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD 424 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH
Confidence 4678889999999998 445678889999999999999999986 7899999999999998 888884
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.9e-21 Score=188.44 Aligned_cols=326 Identities=20% Similarity=0.203 Sum_probs=235.4
Q ss_pred CCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC--CCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCC
Q 037314 31 GVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLS 107 (566)
Q Consensus 31 ~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~ 107 (566)
|.......+|. .+|.+...+.++.|.+++||+.. .+++|++|||++|+|+.| |++|++++.|..|.+.++..++
T Consensus 53 Cr~~GL~eVP~---~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPA---NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCcc---cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34455556664 45889999999999999999654 999999999999999977 7889999999999998865677
Q ss_pred CCCC--CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCC------
Q 037314 108 RIPD--ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLK------ 177 (566)
Q Consensus 108 ~~p~--l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~------ 177 (566)
.+|. |.++..|+.|.+.-|.........+..+++|..|.+.+ +.++.++... .+..++++++..+..+-
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccch
Confidence 7775 99999999999999888777788999999999999999 7788888854 78899999888765221
Q ss_pred ------cCCcccC-------------------------CCCEE--ecC--CCCCcccCc-cccCCCCCcEEeccCCCCcc
Q 037314 178 ------RFPEISC-------------------------NIEHL--DLK--ETAIEELPS-SIGNLSRLVHLDLTNCSRLK 221 (566)
Q Consensus 178 ------~~~~~~~-------------------------~L~~L--~L~--~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~ 221 (566)
..|...+ .++.+ .++ .......|. .|..+++|+.|++++|+...
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 1111111 11111 111 111122232 27889999999999999998
Q ss_pred cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCCCCCCCCC-----
Q 037314 222 SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRCKGRPPLM----- 295 (566)
Q Consensus 222 ~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~----- 295 (566)
.-+.+|.++..+++|.|..|+.-..-...|.++..|++|++.+|+|+.+ |..+..+..|.+|.+-.|....+-.
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH
Confidence 8899999999999999999876555556788999999999999999966 6688888999999887765321100
Q ss_pred -------CCCcccccCCCCCcEEecccCCCcc----cCCC------------------CCC-------------CCCCCE
Q 037314 296 -------SLKLPILFQLQNLEYLSLVDCGITE----LPES------------------LGR-------------SPSLNY 333 (566)
Q Consensus 296 -------~~~l~~~~~l~~L~~L~L~~~~l~~----lp~~------------------l~~-------------l~~L~~ 333 (566)
....|.-+....++.+.+++..+.+ -|+. ... ...-.+
T Consensus 369 ~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~te 448 (498)
T KOG4237|consen 369 EWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTE 448 (498)
T ss_pred HHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHH
Confidence 1112222223345555555433221 1110 000 113467
Q ss_pred EeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 334 LNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 334 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
|.+.+|.++.+|.. .+.+| .+++++|+
T Consensus 449 lyl~gn~~~~vp~~--~~~~l-~~dls~n~ 475 (498)
T KOG4237|consen 449 LYLDGNAITSVPDE--LLRSL-LLDLSNNR 475 (498)
T ss_pred HhcccchhcccCHH--HHhhh-hcccccCc
Confidence 78889999999877 66777 88888877
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1e-18 Score=190.89 Aligned_cols=258 Identities=21% Similarity=0.206 Sum_probs=202.0
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcE
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 97 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 97 (566)
.+-..|++++. ....+|..+ |.+|+.|.+.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~------~LtsLP~~l---~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGES------GLTTLPDCL---PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCC------CCCcCCcch---hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccce
Confidence 44667888772 223567654 45899999999999999963 68999999999999999854 468999
Q ss_pred EecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCC
Q 037314 98 LNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLK 177 (566)
Q Consensus 98 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~ 177 (566)
|++++|.+ ..+|.+ ..+|+.|++++|.. ..+|. .+++|+.|++++ +.++.+|.. ..+|+.|++++|. ++
T Consensus 267 L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~-N~L~~Lp~l--p~~L~~L~Ls~N~-L~ 335 (788)
T PRK15387 267 LSIFSNPL-THLPAL--PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSD-NQLASLPAL--PSELCKLWAYNNQ-LT 335 (788)
T ss_pred eeccCCch-hhhhhc--hhhcCEEECcCCcc-ccccc---cccccceeECCC-CccccCCCC--cccccccccccCc-cc
Confidence 99999974 455542 36799999999865 45554 347899999999 477788763 3568889999865 45
Q ss_pred cCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCcc
Q 037314 178 RFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESL 257 (566)
Q Consensus 178 ~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L 257 (566)
.+|....+|++|+|++|.++.+|.. .++|+.|++++|... .+|.. ..+|+.|++++|... .+|.. .++|
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred cccccccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCC
Confidence 6887777999999999999999974 357888999987654 56753 357999999998654 56653 3678
Q ss_pred ceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEecc
Q 037314 258 EVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLA 337 (566)
Q Consensus 258 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls 337 (566)
+.|++++|.++.+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|+
T Consensus 405 ~~LdLS~N~LssIP~l-------------------------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 405 KELMVSGNRLTSLPML-------------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred CEEEccCCcCCCCCcc-------------------------------hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 8999999998877642 135677888889999999989999999999999
Q ss_pred CCCCe
Q 037314 338 ENDFE 342 (566)
Q Consensus 338 ~n~l~ 342 (566)
+|+++
T Consensus 454 ~N~Ls 458 (788)
T PRK15387 454 GNPLS 458 (788)
T ss_pred CCCCC
Confidence 99987
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5e-18 Score=186.63 Aligned_cols=245 Identities=22% Similarity=0.340 Sum_probs=136.2
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 127 (566)
++...|+++++.++++|..+ +++|+.|++++|+++.+|..+. .+|+.|++++|.+. .+|. +-..+|+.|+|++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCc
Confidence 45667777777777777654 4577788888888877776553 47788888777643 4553 112467777777776
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCccc-CCCCEEecCCCCCcccCccccCC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEIS-CNIEHLDLKETAIEELPSSIGNL 206 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~-~~L~~L~L~~~~i~~lp~~~~~l 206 (566)
.. .+|..+. .+|+.|++++ +.++.+|..+ .++|+.|++++|. ++.+|..+ .+|++|++++|.+..+|..+.
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~-- 324 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFH-NKISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLP-- 324 (754)
T ss_pred cC-cCChhHh--CCCCEEECcC-CccCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcccc--
Confidence 43 5565543 4677777775 4666666544 2466666666653 33444322 245666666666665554332
Q ss_pred CCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEcc
Q 037314 207 SRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFD 286 (566)
Q Consensus 207 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~ 286 (566)
++|+.|++++|... .+|..+. ++| +.|++++|.++.+|..+. ++|+.|+++
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL------------------------~~L~Ls~N~L~~LP~~lp--~~L~~LdLs 375 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP--PEL------------------------QVLDVSKNQITVLPETLP--PTITTLDVS 375 (754)
T ss_pred ccceeccccCCccc-cCChhhc--Ccc------------------------cEEECCCCCCCcCChhhc--CCcCEEECC
Confidence 45555555554322 2333221 344 444444444444443221 334444444
Q ss_pred CCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCCCC----CCCCCCCEEeccCCCCe
Q 037314 287 RCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPESL----GRSPSLNYLNLAENDFE 342 (566)
Q Consensus 287 ~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~ 342 (566)
+|.... +|. +. .+|+.|++++|++..+|..+ +.++.+..|++.+|++.
T Consensus 376 ~N~Lt~------LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 376 RNALTN------LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCCC------CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 443211 111 11 24666666666666655433 33456667777777664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.1e-17 Score=183.90 Aligned_cols=243 Identities=17% Similarity=0.272 Sum_probs=188.5
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcE
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 97 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 97 (566)
.+...|++++. ....+|.. +|+.|+.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~------~LtsLP~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKIL------GLTTIPAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCC------CcCcCCcc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccE
Confidence 46778888772 22345543 46789999999999999997664 699999999999999988664 47999
Q ss_pred EecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCC
Q 037314 98 LNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNL 176 (566)
Q Consensus 98 L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l 176 (566)
|+|++|.+. .+|. +. .+|+.|++++|... .+|..+. ++|+.|++++| .++.+|..+ .++|+.|++++|..
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~L- 316 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNSL- 316 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCcc-
Confidence 999999855 5664 33 58999999987654 6776554 58999999995 778888654 35799999999764
Q ss_pred CcCCc-ccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCC
Q 037314 177 KRFPE-ISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLE 255 (566)
Q Consensus 177 ~~~~~-~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~ 255 (566)
..+|. ...+|+.|++++|.+..+|..+. ++|+.|++++|.. ..+|..+ .++|++|++++|... .+|..+. .
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred ccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 45554 45689999999999999998764 7999999999865 4577655 368999999998654 6676554 3
Q ss_pred ccceeccCCccccccCccccc----CCCCCEEEccCCC
Q 037314 256 SLEVMLANETAISQVPPSIAC----LNRVESLSFDRCK 289 (566)
Q Consensus 256 ~L~~L~l~~n~l~~l~~~l~~----l~~L~~L~l~~~~ 289 (566)
.|+.|++++|.+..+|..+.. ++.+..|++.+|.
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 789999999999988875543 3666777777766
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=1.2e-15 Score=154.81 Aligned_cols=270 Identities=20% Similarity=0.130 Sum_probs=144.1
Q ss_pred EEEcCCCCCc-c-ccccCCCCCCCcEEecCCCCCCCC----CCC-CCCCCCccEEEeeCCCCc------cccchhhhhcc
Q 037314 74 SLEMPHSNIE-Q-LWNGVQNLAALKRLNLSYSKQLSR----IPD-ISLAFNIERLDLVGCASL------IETHSSIQHLN 140 (566)
Q Consensus 74 ~L~L~~~~i~-~-l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~l~~L~~L~L~~c~~~------~~~~~~~~~l~ 140 (566)
.|+|..+.++ . ....+..+.+|+.|+++++.+... ++. +...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 2 223345666788888888775322 222 556667888888776544 12334566677
Q ss_pred cCcEEecCCCCCCCccCCcC-CC---CCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCC-CCCcEEecc
Q 037314 141 KLVFLNLGHCISLKSLPTGI-NL---DSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNL-SRLVHLDLT 215 (566)
Q Consensus 141 ~L~~L~L~~c~~l~~lp~~~-~l---~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l-~~L~~L~L~ 215 (566)
+|+.|++++|......+..+ .+ ++|++|++++|...... ...+...+..+ ++|+.|+++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~----------------~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG----------------LRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH----------------HHHHHHHHHhCCCCceEEEcC
Confidence 77777777755433332222 12 33666666665432100 00112223333 555566665
Q ss_pred CCCCcc----cccccccCCCCCcEEeccCCcCCc----ccccccCCCCccceeccCCcccc-----ccCcccccCCCCCE
Q 037314 216 NCSRLK----SVSSSLCNLKSLVNLYLSGCLKLE----KLPEEIGNLESLEVMLANETAIS-----QVPPSIACLNRVES 282 (566)
Q Consensus 216 ~~~~l~----~lp~~l~~l~~L~~L~ls~~~~l~----~~p~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~ 282 (566)
+|.... .++..+..+++|++|++++|...+ .++..+..+++|+.|++++|.+. .+...+..+++|++
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 555442 223334445556666666654432 12223334456666666665554 23334455666777
Q ss_pred EEccCCCCCCCCCCCCcccc-----cCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEeccCCCCeec-----Ccc
Q 037314 283 LSFDRCKGRPPLMSLKLPIL-----FQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNLAENDFEKI-----PSS 347 (566)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~-----~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~ 347 (566)
|++++|.... ..+..+ ...+.|++|++++|.+++ +...+..+++|+++++++|.+..- ...
T Consensus 226 L~ls~n~l~~----~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 226 LNLGDNNLTD----AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred EecCCCcCch----HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 7776665221 001111 123678888888887762 334455557788888888887632 233
Q ss_pred hhcC-CCCcEecccccc
Q 037314 348 IKQL-SKLLFLTLRNCK 363 (566)
Q Consensus 348 i~~l-~~L~~L~L~~c~ 363 (566)
+... +.|++|++.+++
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3444 677777776653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=1e-15 Score=155.32 Aligned_cols=272 Identities=21% Similarity=0.176 Sum_probs=161.9
Q ss_pred EEeCCccCC--CCCCCC-CCCCeEEEEcCCCCCc-----cccccCCCCCCCcEEecCCCCCCC------CCC-CCCCCCC
Q 037314 53 FYWDGYPLK--SLPSKN-IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYSKQLS------RIP-DISLAFN 117 (566)
Q Consensus 53 L~l~~~~l~--~lp~~~-~~~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~------~~p-~l~~l~~ 117 (566)
|++.++.++ .++..+ ...+|++|+++++.++ .++..+...++|++++++++.... .++ .+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555543 233333 5667999999999984 466677888999999999987542 111 2667889
Q ss_pred ccEEEeeCCCCccccchhhhhccc---CcEEecCCCCCCC----ccCCcC-CC-CCccEEEecCCCCCCcCCcccCCCCE
Q 037314 118 IERLDLVGCASLIETHSSIQHLNK---LVFLNLGHCISLK----SLPTGI-NL-DSLKVLYLGGCSNLKRFPEISCNIEH 188 (566)
Q Consensus 118 L~~L~L~~c~~~~~~~~~~~~l~~---L~~L~L~~c~~l~----~lp~~~-~l-~~L~~L~L~~~~~l~~~~~~~~~L~~ 188 (566)
|++|++++|......+..+..+.+ |++|++++|.... .+...+ .+ ++|+.|++++|.......
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------- 154 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-------- 154 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--------
Confidence 999999999887666666766666 9999999975331 111111 34 677788877775432110
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCcc----cccccccCCCCCcEEeccCCcCCc----ccccccCCCCcccee
Q 037314 189 LDLKETAIEELPSSIGNLSRLVHLDLTNCSRLK----SVSSSLCNLKSLVNLYLSGCLKLE----KLPEEIGNLESLEVM 260 (566)
Q Consensus 189 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~ls~~~~l~----~~p~~l~~l~~L~~L 260 (566)
..++..+..+++|++|++++|...+ .++..+..+++|++|++++|...+ .+...+..+++|+.|
T Consensus 155 --------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 155 --------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred --------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 0122234444555555555554432 122233344556666666554332 223344455666666
Q ss_pred ccCCcccccc-Cccc-c----cCCCCCEEEccCCCCCCCCCCCCc-ccccCCCCCcEEecccCCCcc-----cCCCCCCC
Q 037314 261 LANETAISQV-PPSI-A----CLNRVESLSFDRCKGRPPLMSLKL-PILFQLQNLEYLSLVDCGITE-----LPESLGRS 328 (566)
Q Consensus 261 ~l~~n~l~~l-~~~l-~----~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l 328 (566)
++++|.++.. ...+ . ..+.|++|++++|....... ..+ ..+..+++|+++++++|.+.+ +...+...
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA-KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH-HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 6666655521 1111 1 23677777877776331100 011 124556788999999998885 33444445
Q ss_pred -CCCCEEeccCCCC
Q 037314 329 -PSLNYLNLAENDF 341 (566)
Q Consensus 329 -~~L~~L~Ls~n~l 341 (566)
+.|++|++.+|.+
T Consensus 306 ~~~~~~~~~~~~~~ 319 (319)
T cd00116 306 GNELESLWVKDDSF 319 (319)
T ss_pred CCchhhcccCCCCC
Confidence 6889999888764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3e-16 Score=136.02 Aligned_cols=154 Identities=29% Similarity=0.479 Sum_probs=98.9
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
+++.|.|++|++..+|..+..+.+|+.|++++| ..+.+|..++.+++|+.|++.- +.+..+|..|+.++.|++|++..
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 445555666666666666666666666666653 3445555555566666555554 23444555555556666665555
Q ss_pred cccc--ccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCe
Q 037314 265 TAIS--QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 265 n~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 342 (566)
|.+. .+|.. |-.++.|+-|++++|.+.-+|..++.+++|+.|.+.+|++-
T Consensus 112 nnl~e~~lpgn----------------------------ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 112 NNLNENSLPGN----------------------------FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred cccccccCCcc----------------------------hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 5554 23332 33445566666666767677778888888888888888888
Q ss_pred ecCcchhcCCCCcEecccccccCCcCC
Q 037314 343 KIPSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 343 ~lp~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
++|..++.+++|++|.+.+|+ ++.+|
T Consensus 164 ~lpkeig~lt~lrelhiqgnr-l~vlp 189 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNR-LTVLP 189 (264)
T ss_pred hCcHHHHHHHHHHHHhcccce-eeecC
Confidence 888888888888888888876 66665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-15 Score=132.31 Aligned_cols=167 Identities=28% Similarity=0.413 Sum_probs=130.1
Q ss_pred CccCCcCCCCCccEEEecCCCCCCcCCcc---cCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCC
Q 037314 154 KSLPTGINLDSLKVLYLGGCSNLKRFPEI---SCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNL 230 (566)
Q Consensus 154 ~~lp~~~~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l 230 (566)
..+|..+++..++.|.++++. +..+|.. ..+|+.|++.+|.|+++|.+++.+++|+.|+++- ..+..+|..|+.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 344555566666666666643 3333322 2366667777889999999999999999999986 4567899999999
Q ss_pred CCCcEEeccCCcCCc-ccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCc
Q 037314 231 KSLVNLYLSGCLKLE-KLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLE 309 (566)
Q Consensus 231 ~~L~~L~ls~~~~l~-~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~ 309 (566)
+.|+.|++..|+..+ .+|..|-.|+.|+.|++++|.+.-+|..++.++ +|+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt----------------------------~lq 153 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT----------------------------NLQ 153 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc----------------------------cee
Confidence 999999999987665 689999999999999999999988887666555 455
Q ss_pred EEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhc
Q 037314 310 YLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQ 350 (566)
Q Consensus 310 ~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~ 350 (566)
.|.+.+|.+.++|..++.++.|++|.+.+|.++.+|..+++
T Consensus 154 il~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 154 ILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred EEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 55555666677888888899999999999999999876654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=4.2e-15 Score=144.71 Aligned_cols=118 Identities=22% Similarity=0.260 Sum_probs=83.6
Q ss_pred EeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccc
Q 037314 54 YWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIE 131 (566)
Q Consensus 54 ~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~ 131 (566)
+.++-.++++|.+. ++.-+++.|..|+|+.+|+ +|+.+++|++||||+|.+...-|+ |.++++|-.|-+.++..+..
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 44455677777654 4577889999999998875 478889999999998886655565 88888888887777555566
Q ss_pred cc-hhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCC
Q 037314 132 TH-SSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGC 173 (566)
Q Consensus 132 ~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~ 173 (566)
+| ..|+.|..|+.|.+.- +.+..++... .+++|..|.+..+
T Consensus 131 l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred hhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccch
Confidence 65 4577888888887766 3455554433 5666666666553
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=3e-12 Score=143.43 Aligned_cols=124 Identities=26% Similarity=0.373 Sum_probs=94.8
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCC--Ccccccc-CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEe
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSN--IEQLWNG-VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDL 123 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 123 (566)
...|...+.++.+..++.....++|++|-+.++. +..++.+ |..++.|++|||++|....++|+ ++.+.+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4678888888888888887777788888888876 5555443 67788888888888887778876 777888888888
Q ss_pred eCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecC
Q 037314 124 VGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGG 172 (566)
Q Consensus 124 ~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~ 172 (566)
+++. ...+|.++++|++|.+|++..+..+..+|... .+.+|++|.+..
T Consensus 603 ~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 603 SDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 8754 45778888888888888888777666665555 477888877765
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3.9e-12 Score=142.60 Aligned_cols=206 Identities=27% Similarity=0.352 Sum_probs=138.0
Q ss_pred ccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCC-CCCCCC--CCCCCCccEEEeeCCCCccccch
Q 037314 58 YPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQ-LSRIPD--ISLAFNIERLDLVGCASLIETHS 134 (566)
Q Consensus 58 ~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~c~~~~~~~~ 134 (566)
......|...+....+...+-++.+..++....+ ++|+.|-+.+|.. ...++. |..++.|++|||++|...+.+|.
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 4455567666778889999999999888666543 4799998888863 455554 88899999999999999999999
Q ss_pred hhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCccc---CCCCEEecCCCCCcc---cCccccCCC
Q 037314 135 SIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIEE---LPSSIGNLS 207 (566)
Q Consensus 135 ~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~~---lp~~~~~l~ 207 (566)
+++.|-+|++|++++ +.++.+|.++ +++.|.+|++..+..+..+|... .+|++|.+....... .-..+..+.
T Consensus 590 ~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 999999999999998 7888999988 89999999999888777776543 478888776654221 112245555
Q ss_pred CCcEEeccCCCCcccccccccCCCCCc----EEeccCCcCCcccccccCCCCccceeccCCcccc
Q 037314 208 RLVHLDLTNCSRLKSVSSSLCNLKSLV----NLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS 268 (566)
Q Consensus 208 ~L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~ 268 (566)
.|+.+.+..... .+-..+..+..|. .+.+.+ ......+..+..+.+|+.|.+.++.+.
T Consensus 669 ~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 669 HLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred chhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCc
Confidence 666665544322 1111122222222 222222 122233344555666666666555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=3.4e-12 Score=130.01 Aligned_cols=208 Identities=29% Similarity=0.432 Sum_probs=134.3
Q ss_pred EEecCCCCCCCccCCcC---CCCCccEEEecCCCCCCcCCccc---CCCCEEecCCCCCcccCccccCCCCCcEEeccCC
Q 037314 144 FLNLGHCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNC 217 (566)
Q Consensus 144 ~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~ 217 (566)
.|.|++ ..++.+|... .+.--...+++.|. ...+|+.. ..|+.+.|..|.+..+|..++++..|+.|+++.|
T Consensus 54 ~l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSG-RRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccc-chhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 345555 6677777654 34444556666643 34445433 3567777777888888888888888888888775
Q ss_pred CCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCC
Q 037314 218 SRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSL 297 (566)
Q Consensus 218 ~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 297 (566)
. +..+|..++.|+ |+.|.++. ++++.+|+.++.+..|..|+.+.|.+..+|..++.+.+|+.|.++.|....
T Consensus 132 q-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~----- 203 (722)
T KOG0532|consen 132 Q-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED----- 203 (722)
T ss_pred h-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-----
Confidence 3 455666666665 67776665 456677777777777777777777777777777777777777776665432
Q ss_pred Cccc-ccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcch---hcCCCCcEecccccc
Q 037314 298 KLPI-LFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSI---KQLSKLLFLTLRNCK 363 (566)
Q Consensus 298 ~l~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c~ 363 (566)
+|. +.. -.|..||+++|++..||-.+..|+.|++|-|.+|.+++-|..| +...-.++|+..-|+
T Consensus 204 -lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 204 -LPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -CCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 333 332 2366677777777777777777777777777777776666554 233445566666663
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.2e-10 Score=119.82 Aligned_cols=177 Identities=34% Similarity=0.461 Sum_probs=136.5
Q ss_pred CCCEEecCCCCCcccCccccCCC-CCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLS-RLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
.++.|++.++.+.++|....... +|+.|+++++. ...+|..+..+++|+.|++++|.. ..+|.....++.|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheecc
Confidence 57777777788888887777774 88888888754 344555677888888888888543 4455555577888888888
Q ss_pred CccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCee
Q 037314 264 ETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEK 343 (566)
Q Consensus 264 ~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 343 (566)
+|.+..+|..+..+..|++|.+++|..... ...+..+..+..+.+.++++..++..++.+++++.|++++|.++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIEL-----LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceec-----chhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 888888888777777788888888852221 223667778888888888888888888899999999999999998
Q ss_pred cCcchhcCCCCcEecccccccCCcCC
Q 037314 344 IPSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 344 lp~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
++. +..+.+|+.|+++++.....+|
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccc-ccccCccCEEeccCccccccch
Confidence 887 8889999999999987665555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=9.1e-12 Score=126.93 Aligned_cols=199 Identities=26% Similarity=0.413 Sum_probs=165.6
Q ss_pred CCCCcCCcccC-----CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccc
Q 037314 174 SNLKRFPEISC-----NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLP 248 (566)
Q Consensus 174 ~~l~~~~~~~~-----~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p 248 (566)
..++.||-.-. .....+++.|++.++|..++.+..|+.+.+..| -...+|..++++..|+.|+|+.| .+..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCC
Confidence 44556663322 234458999999999999999999999999875 35678889999999999999985 456677
Q ss_pred cccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCCCCCC
Q 037314 249 EEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPESLGR 327 (566)
Q Consensus 249 ~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~~l~~ 327 (566)
..+..++ |+.|-+++|+++.+|..++.+..|..|+.+.|.... +|+ ++++.+|+.|.+..|++..+|..+..
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s------lpsql~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS------LPSQLGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh------chHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 7777775 899999999999999999999999999999998654 455 88999999999999999999998884
Q ss_pred CCCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCCC------CCC-CeEeecCCc
Q 037314 328 SPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPEL------PCG-STIFARHCT 383 (566)
Q Consensus 328 l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l------p~~-~~L~~~~c~ 383 (566)
+ .|..||++.|++..||.+|..++.|++|-|.+|+ |++=|.- -.. ++|++..|.
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 4 6999999999999999999999999999999998 8876631 111 778877774
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=5.6e-10 Score=116.84 Aligned_cols=195 Identities=30% Similarity=0.307 Sum_probs=128.6
Q ss_pred EEEeCCccC-CCCCCCCCCCCeEEEEcCCCCCccccccCCCCC-CCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCc
Q 037314 52 YFYWDGYPL-KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLA-ALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASL 129 (566)
Q Consensus 52 ~L~l~~~~l-~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~ 129 (566)
.+....+.+ ..+........+..|++.++.+.+++.....+. +|+.|++++|.+......+..+++|+.|++++|. +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 355555555 333333355677777787777777777766664 7788888777644333356777778888877765 3
Q ss_pred cccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCC--cccCCCCEEecCCCCCcccCccccCC
Q 037314 130 IETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFP--EISCNIEHLDLKETAIEELPSSIGNL 206 (566)
Q Consensus 130 ~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~~~~l 206 (566)
..++...+.++.|+.|++++ +.+..+|..+ ....|++|.++++....... ....++..+.+.++.+..++..++.+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 44455555777777788877 6677777765 44457777777765333222 22335556667777777777788888
Q ss_pred CCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccc
Q 037314 207 SRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEE 250 (566)
Q Consensus 207 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~ 250 (566)
+.++.|++++|.... ++. +..+.+++.|+++++......+..
T Consensus 255 ~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 255 SNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 888888888765443 333 777888888888887766555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-10 Score=115.41 Aligned_cols=84 Identities=23% Similarity=0.174 Sum_probs=50.5
Q ss_pred CCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeCCCCcc--ccchhhhhcccCcEEecCCCCCCCccCCcC--CCC
Q 037314 90 QNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVGCASLI--ETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLD 163 (566)
Q Consensus 90 ~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~ 163 (566)
.++++|+.+.|.++..-.... ....+++++.|+|++|-... .+..-...|++|+.|+++.|.......... .++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 678888888888776332221 35678888888888875443 233445678888888888743222221111 344
Q ss_pred CccEEEecCC
Q 037314 164 SLKVLYLGGC 173 (566)
Q Consensus 164 ~L~~L~L~~~ 173 (566)
+|+.|.+++|
T Consensus 198 ~lK~L~l~~C 207 (505)
T KOG3207|consen 198 HLKQLVLNSC 207 (505)
T ss_pred hhheEEeccC
Confidence 5555555544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=3.7e-10 Score=106.82 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCC
Q 037314 184 CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGC 241 (566)
Q Consensus 184 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~ 241 (566)
..|+.++|++|.|+.+..++.-.|+++.|+++.|.....- .+..+++|+.||+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccc
Confidence 3577778888888888777777777777777776544321 2555666666666664
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.9e-09 Score=95.70 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCccccccCC-CCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhh-h
Q 037314 60 LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQ-NLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSI-Q 137 (566)
Q Consensus 60 l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~-~ 137 (566)
++..|...++.++++|+|.+++|+.+. .+. .+.+|+.|+|++|. +..++.+..+++|+.|++++|.... +...+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S--CHHHHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCc-cccchHH
Confidence 444555556777888888888888773 444 57788888888887 4456677788888888888876554 33334 4
Q ss_pred hcccCcEEecCCCCCCCccCCcC---CCCCccEEEecCCC
Q 037314 138 HLNKLVFLNLGHCISLKSLPTGI---NLDSLKVLYLGGCS 174 (566)
Q Consensus 138 ~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~~~ 174 (566)
.+++|+.|++++ +.+..+.... .+++|++|++.+|+
T Consensus 86 ~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 86 NLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp H-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 678888888877 4555543311 45556666555543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.6e-10 Score=110.32 Aligned_cols=205 Identities=21% Similarity=0.180 Sum_probs=112.5
Q ss_pred hhcccCcEEecCCCCCCCccCC--cC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEe
Q 037314 137 QHLNKLVFLNLGHCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLD 213 (566)
Q Consensus 137 ~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~ 213 (566)
.++.+|+...|.++ .+...+. .. .+++++.|+|++|-...- ..+-.....+++|+.|+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw------------------~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW------------------FPVLKIAEQLPSLENLN 178 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH------------------HHHHHHHHhcccchhcc
Confidence 45777888888763 3444332 11 566666666666422111 11222244556666666
Q ss_pred ccCCCCcccccc-cccCCCCCcEEeccCCcCCc-ccccccCCCCccceeccCCcc-ccccCcccccCCCCCEEEccCCCC
Q 037314 214 LTNCSRLKSVSS-SLCNLKSLVNLYLSGCLKLE-KLPEEIGNLESLEVMLANETA-ISQVPPSIACLNRVESLSFDRCKG 290 (566)
Q Consensus 214 L~~~~~l~~lp~-~l~~l~~L~~L~ls~~~~l~-~~p~~l~~l~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~~~~ 290 (566)
++.|+...-... .-..+++|+.|.+++|.... .+......+++|+.|++..|. +..-..+..-+..|++|+|++|..
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 665544321111 11235566666666665542 222334455666666666663 222222333456666677766664
Q ss_pred CCCCCCCCcccccCCCCCcEEecccCCCcc--cCCC-----CCCCCCCCEEeccCCCCeecCc--chhcCCCCcEecccc
Q 037314 291 RPPLMSLKLPILFQLQNLEYLSLVDCGITE--LPES-----LGRSPSLNYLNLAENDFEKIPS--SIKQLSKLLFLTLRN 361 (566)
Q Consensus 291 ~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~ 361 (566)
... ..++..+.++.|..|+++.|.+.+ +|+. ...+++|++|+++.|++...+. .+..+++|+.|.+..
T Consensus 259 i~~---~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 259 IDF---DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccc---ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 331 112335667777777777777776 3443 4567788888888888765543 456667777776655
Q ss_pred cc
Q 037314 362 CK 363 (566)
Q Consensus 362 c~ 363 (566)
+.
T Consensus 336 n~ 337 (505)
T KOG3207|consen 336 NY 337 (505)
T ss_pred cc
Confidence 54
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.2e-09 Score=103.46 Aligned_cols=103 Identities=20% Similarity=0.255 Sum_probs=47.0
Q ss_pred CCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCE
Q 037314 254 LESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNY 333 (566)
Q Consensus 254 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 333 (566)
+..|+++|+++|.|+++..++.-.+.++.|+++.|.... +..+..+++|+.|||++|.++++..+-..+-+++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 344445555555555554444445555555555544322 12233444555555555544444333333344444
Q ss_pred EeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 334 LNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 334 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
|.|++|.++++. +++.+.+|..||+++|+
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 444444444443 34444444444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.8e-09 Score=95.11 Aligned_cols=101 Identities=25% Similarity=0.336 Sum_probs=29.8
Q ss_pred ccceeccCCccccccCcccc-cCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCC-CCCCCCCE
Q 037314 256 SLEVMLANETAISQVPPSIA-CLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSLNY 333 (566)
Q Consensus 256 ~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~ 333 (566)
++++|++++|.|+.+.. ++ .+.+|+.|++++|.... ++.+..++.|++|++++|+++++.+.+ ..+++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~------l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK------LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc------ccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34444555554444422 22 34455555555554322 223445667777777777777765443 34677777
Q ss_pred EeccCCCCeecC--cchhcCCCCcEecccccc
Q 037314 334 LNLAENDFEKIP--SSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 334 L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 363 (566)
|++++|+|..+. ..+..+++|+.|++.+|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 777777766443 245667777777777776
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=9.3e-10 Score=106.48 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=54.6
Q ss_pred ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-----cCCCC-CCCCCCCEEeccCCCCe----
Q 037314 273 SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-----LPESL-GRSPSLNYLNLAENDFE---- 342 (566)
Q Consensus 273 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~---- 342 (566)
.+..+++|+.|++++|.....-.......++.+++|+.|++++|.+.. +-+.+ ...|+|+.|++.+|.++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 344555555555555543221000001114556677888888887765 22222 34678888888888876
Q ss_pred -ecCcchhcCCCCcEecccccc
Q 037314 343 -KIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 343 -~lp~~i~~l~~L~~L~L~~c~ 363 (566)
.+..++...+.|+.|+|++|+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccc
Confidence 344456668888888888887
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=9.2e-10 Score=106.51 Aligned_cols=230 Identities=17% Similarity=0.160 Sum_probs=139.8
Q ss_pred CCCCCCccEEEeeCCCCccc----cchhhhhcccCcEEecCCCCCCC----ccCCcC--------CCCCccEEEecCCCC
Q 037314 112 ISLAFNIERLDLVGCASLIE----THSSIQHLNKLVFLNLGHCISLK----SLPTGI--------NLDSLKVLYLGGCSN 175 (566)
Q Consensus 112 l~~l~~L~~L~L~~c~~~~~----~~~~~~~l~~L~~L~L~~c~~l~----~lp~~~--------~l~~L~~L~L~~~~~ 175 (566)
+-....+++|+|+||++... +...+.+.++|+..++++- ... .+|..+ .+++|++|+||.|-.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 55667899999999987764 3345666788888888772 221 333322 567888888888765
Q ss_pred CCcCCc-------ccCCCCEEecCCCCCccc--------------CccccCCCCCcEEeccCCCCcc----cccccccCC
Q 037314 176 LKRFPE-------ISCNIEHLDLKETAIEEL--------------PSSIGNLSRLVHLDLTNCSRLK----SVSSSLCNL 230 (566)
Q Consensus 176 l~~~~~-------~~~~L~~L~L~~~~i~~l--------------p~~~~~l~~L~~L~L~~~~~l~----~lp~~l~~l 230 (566)
-...+. ....|++|+|.+|.+... -.-+..-++|+++...+|+.-. .+...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 443332 234677777777776532 1224455677777777765432 222345556
Q ss_pred CCCcEEeccCCcCCc----ccccccCCCCccceeccCCcccc-----ccCcccccCCCCCEEEccCCCCCCCCCCCCccc
Q 037314 231 KSLVNLYLSGCLKLE----KLPEEIGNLESLEVMLANETAIS-----QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 231 ~~L~~L~ls~~~~l~----~~p~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
+.|+.+.++.|.+.. .+...+..+++|++|++..|.++ .+...+..++.|+.|++++|.....-.......
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 777777777765432 23345667777777777777766 234455666777777777776332111000111
Q ss_pred -ccCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEeccCCCCe
Q 037314 302 -LFQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 302 -~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 342 (566)
-...++|+.|.+.+|.++. +...+...+.|+.|+|++|.+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1235677777777777764 3334455677777777777773
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.5e-09 Score=107.27 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=48.5
Q ss_pred CCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcc------cCCCCCCCCCCCEEeccCCCCe--ecCcc
Q 037314 277 LNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITE------LPESLGRSPSLNYLNLAENDFE--KIPSS 347 (566)
Q Consensus 277 l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~--~lp~~ 347 (566)
++.|+.+++.+|....+. .+.. -.+++.|+.|.+++|.... +...-..+..|+.+.|+++... ..-+.
T Consensus 345 ~~~Le~l~~e~~~~~~d~---tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDG---TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred Chhhhhhcccccceehhh---hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 455555555555533221 1111 3456667777776664322 1233355667777777777743 33344
Q ss_pred hhcCCCCcEecccccccCC
Q 037314 348 IKQLSKLLFLTLRNCKRLQ 366 (566)
Q Consensus 348 i~~l~~L~~L~L~~c~~L~ 366 (566)
+..+++|+.+++-.|....
T Consensus 422 l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVT 440 (483)
T ss_pred HhhCcccceeeeechhhhh
Confidence 5667777777777777554
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=4.4e-07 Score=92.22 Aligned_cols=59 Identities=27% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccc
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLP 248 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p 248 (566)
++++|+++++.++.+|. -..+|++|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 34444444445555551 22356667777666666666544 2467777777765555554
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.6e-09 Score=104.67 Aligned_cols=83 Identities=30% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCcEEecCCCCCCCCCCC---CCCCCCccEEEeeCCCCccccc--hhhhhcccCcEEecCCCCCCCccCCc-C--CCCCc
Q 037314 94 ALKRLNLSYSKQLSRIPD---ISLAFNIERLDLVGCASLIETH--SSIQHLNKLVFLNLGHCISLKSLPTG-I--NLDSL 165 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~~~~~~--~~~~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~L 165 (566)
.||.|.++++.-...-+- ...++|+++|.+.+|..+.... ..-..+++|++|++..|..++...-. + .+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 355555555543222211 2345555555555555333211 11223455555555555555433221 1 45555
Q ss_pred cEEEecCCCCC
Q 037314 166 KVLYLGGCSNL 176 (566)
Q Consensus 166 ~~L~L~~~~~l 176 (566)
++|++++|..+
T Consensus 219 ~~lNlSwc~qi 229 (483)
T KOG4341|consen 219 KYLNLSWCPQI 229 (483)
T ss_pred HHhhhccCchh
Confidence 55555555443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=1.2e-08 Score=107.16 Aligned_cols=240 Identities=25% Similarity=0.239 Sum_probs=119.0
Q ss_pred CCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEec
Q 037314 69 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNL 147 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L 147 (566)
+..+..+.+..+.|+++-..+..+++|+.|++.+|. +..+.. +..+++|++|++++|.+.... .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 344445555555555543445555555555555554 233333 455555555555555433321 2334444555555
Q ss_pred CCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCcc-ccCCCCCcEEeccCCCCccccccc
Q 037314 148 GHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSS-IGNLSRLVHLDLTNCSRLKSVSSS 226 (566)
Q Consensus 148 ~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~ 226 (566)
.+ +.+..++..-.++.|+.++++ +|.+..+... ...+.+++.+.+.+|.......
T Consensus 148 ~~-N~i~~~~~~~~l~~L~~l~l~---------------------~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-- 203 (414)
T KOG0531|consen 148 SG-NLISDISGLESLKSLKLLDLS---------------------YNRIVDIENDELSELISLEELDLGGNSIREIEG-- 203 (414)
T ss_pred cc-CcchhccCCccchhhhcccCC---------------------cchhhhhhhhhhhhccchHHHhccCCchhcccc--
Confidence 55 334444332234444444444 4444444332 3445555555555543322111
Q ss_pred ccCCCCCcEEeccCCcCCcccccccCCCC--ccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccC
Q 037314 227 LCNLKSLVNLYLSGCLKLEKLPEEIGNLE--SLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQ 304 (566)
Q Consensus 227 l~~l~~L~~L~ls~~~~l~~~p~~l~~l~--~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (566)
+..+..+..+++..+.....- .+..+. +|+.+++++|.+..++..+..+..+..|++.++.... ...+..
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~------~~~~~~ 275 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN------LEGLER 275 (414)
T ss_pred hHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhccccc------cccccc
Confidence 111222222233333222211 111122 3677777777777766666677777777777666322 112334
Q ss_pred CCCCcEEecccCCCcc----cCC-CCCCCCCCCEEeccCCCCee
Q 037314 305 LQNLEYLSLVDCGITE----LPE-SLGRSPSLNYLNLAENDFEK 343 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~----lp~-~l~~l~~L~~L~Ls~n~l~~ 343 (566)
.+.+..+....+.+.. ... .....+.++...+..|.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 4556666666666553 222 25667788888888888653
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3.5e-07 Score=100.75 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=73.7
Q ss_pred CeEEEEcCCCCCc-cccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecC
Q 037314 71 HLVSLEMPHSNIE-QLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLG 148 (566)
Q Consensus 71 ~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~ 148 (566)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|...+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677777777776 5677777777788888877777666664 7777777888887777777777777777777777777
Q ss_pred CCCCCCccCCcC--CCCCccEEEecCCC
Q 037314 149 HCISLKSLPTGI--NLDSLKVLYLGGCS 174 (566)
Q Consensus 149 ~c~~l~~lp~~~--~l~~L~~L~L~~~~ 174 (566)
+|.....+|..+ ...++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 766555677655 22345556666554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.7e-07 Score=69.69 Aligned_cols=58 Identities=36% Similarity=0.634 Sum_probs=52.0
Q ss_pred CCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chhcCCCCcEecccccc
Q 037314 306 QNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 363 (566)
++|++|++++|++..+| ..+..+++|++|++++|.++.++. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999987 577999999999999999998865 68999999999999986
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.3e-09 Score=99.09 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=89.2
Q ss_pred CCcEEecCCCCCCCCC-C-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC---CCCCccEE
Q 037314 94 ALKRLNLSYSKQLSRI-P-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI---NLDSLKVL 168 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~-p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L 168 (566)
.|++|||+...+.... - -++.+.+|+.|.|+|+.....+...+..-.+|+.|+++.|+.++...... +++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777665433211 1 14556667777777766655555566666677777777776665433222 66777777
Q ss_pred EecCCCCCCcC-----CcccCCCCEEecCCCC----CcccCccccCCCCCcEEeccCCCCccc-ccccccCCCCCcEEec
Q 037314 169 YLGGCSNLKRF-----PEISCNIEHLDLKETA----IEELPSSIGNLSRLVHLDLTNCSRLKS-VSSSLCNLKSLVNLYL 238 (566)
Q Consensus 169 ~L~~~~~l~~~-----~~~~~~L~~L~L~~~~----i~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~l 238 (566)
++++|...... ..+..+++.|+++|+. ...+..-...+++|.+||+++|..++. .-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777654432 1233466667666643 122323345778888888888766543 2234567777888888
Q ss_pred cCCcC
Q 037314 239 SGCLK 243 (566)
Q Consensus 239 s~~~~ 243 (566)
+.|..
T Consensus 346 sRCY~ 350 (419)
T KOG2120|consen 346 SRCYD 350 (419)
T ss_pred hhhcC
Confidence 77753
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.6e-09 Score=99.49 Aligned_cols=174 Identities=25% Similarity=0.334 Sum_probs=129.7
Q ss_pred CCeEEEEcCCCCCc--cccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCcccc--chhhhhcccCcE
Q 037314 70 EHLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIET--HSSIQHLNKLVF 144 (566)
Q Consensus 70 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~--~~~~~~l~~L~~ 144 (566)
..|+.|||+...|+ .+-..++.+.+||.|.|.++++...+.. +..-.+|++|+|++|.....- .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35999999999998 4555568899999999999886655543 777889999999999877653 345788999999
Q ss_pred EecCCCCCCCccCCcC---CCCCccEEEecCCCCCC------cCCcccCCCCEEecCCCCC-c-ccCccccCCCCCcEEe
Q 037314 145 LNLGHCISLKSLPTGI---NLDSLKVLYLGGCSNLK------RFPEISCNIEHLDLKETAI-E-ELPSSIGNLSRLVHLD 213 (566)
Q Consensus 145 L~L~~c~~l~~lp~~~---~l~~L~~L~L~~~~~l~------~~~~~~~~L~~L~L~~~~i-~-~lp~~~~~l~~L~~L~ 213 (566)
|+++.|-..+..-..+ --+.|+.|+++||...- .+.....++.+|+|+++.. + ++-..+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999986655432222 46789999999985432 2234456899999998643 2 3344577899999999
Q ss_pred ccCCCCcccccc---cccCCCCCcEEeccCCcCCc
Q 037314 214 LTNCSRLKSVSS---SLCNLKSLVNLYLSGCLKLE 245 (566)
Q Consensus 214 L~~~~~l~~lp~---~l~~l~~L~~L~ls~~~~l~ 245 (566)
++.|..+ .|. .+...|+|.+|++.||-.-+
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccccCch
Confidence 9999754 333 35677899999999975443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.1e-07 Score=98.35 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=74.8
Q ss_pred CcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc-ccCcccccCCCCCEEEccC
Q 037314 209 LVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIACLNRVESLSFDR 287 (566)
Q Consensus 209 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~ 287 (566)
++.|+|++|...+.+|..+.++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777777777777777788888888887777777777777888888888887777 5677777788888888877
Q ss_pred CCCCCCCCCCCccc-ccC-CCCCcEEecccCCC
Q 037314 288 CKGRPPLMSLKLPI-LFQ-LQNLEYLSLVDCGI 318 (566)
Q Consensus 288 ~~~~~~~~~~~l~~-~~~-l~~L~~L~L~~~~l 318 (566)
|..... +|. +.. ..++..+++.+|..
T Consensus 500 N~l~g~-----iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGR-----VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred Cccccc-----CChHHhhccccCceEEecCCcc
Confidence 765433 333 222 23556777777643
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=1.1e-07 Score=99.85 Aligned_cols=165 Identities=24% Similarity=0.255 Sum_probs=74.4
Q ss_pred cceEEEeCCccCCCCCC-CCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCC
Q 037314 49 ELRYFYWDGYPLKSLPS-KNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 127 (566)
+|..|++.++.++.+.. .-.+.+|++|++++|+|+++ .++..++.|+.|++++|. +..++.+..+++|+.+++++|.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence 45555555555555554 33455555555555555555 334444455555555554 3344444445555555555554
Q ss_pred Cccccc-hhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCc--CCcccC-CCCEEecCCCCCcccCccc
Q 037314 128 SLIETH-SSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKR--FPEISC-NIEHLDLKETAIEELPSSI 203 (566)
Q Consensus 128 ~~~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~--~~~~~~-~L~~L~L~~~~i~~lp~~~ 203 (566)
+...-+ . ...+.+++.+.+.+ +.+..+...-.+..+..+++..+..... ++.... .|+.++++++.+..++..+
T Consensus 174 i~~ie~~~-~~~~~~l~~l~l~~-n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~ 251 (414)
T KOG0531|consen 174 IVDIENDE-LSELISLEELDLGG-NSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGL 251 (414)
T ss_pred hhhhhhhh-hhhccchHHHhccC-CchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccc
Confidence 433322 1 34455555555554 2333222211222222233333221111 010000 1455555555555554444
Q ss_pred cCCCCCcEEeccCC
Q 037314 204 GNLSRLVHLDLTNC 217 (566)
Q Consensus 204 ~~l~~L~~L~L~~~ 217 (566)
..+..+..|++.++
T Consensus 252 ~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 252 ENLKNLPVLDLSSN 265 (414)
T ss_pred cccccccccchhhc
Confidence 44555555555443
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=6.5e-07 Score=66.52 Aligned_cols=56 Identities=30% Similarity=0.377 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 71 HLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
+|++|++++|+++.++. .+..+++|++|++++|.+....|+ |.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44445555555554442 334455555555554443322222 444445555554444
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=6.5e-06 Score=83.87 Aligned_cols=69 Identities=20% Similarity=0.447 Sum_probs=43.5
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCC-CCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPH-SNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVG 125 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~-~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 125 (566)
++++.|++++|.++++|. -+.+|++|.+++ ++++.+|..+ .++|++|++++|..+..+| .+|+.|++.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCC
Confidence 467788888888887772 455677777766 3455565544 2467777777765444444 2466666654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.9e-07 Score=85.42 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=72.2
Q ss_pred cceEEEeCCccCCCCCCCC----CCCCeEEEEcCCCCCcc---ccccCCCCCCCcEEecCCCCCCCCCCCC-CCCCCccE
Q 037314 49 ELRYFYWDGYPLKSLPSKN----IPEHLVSLEMPHSNIEQ---LWNGVQNLAALKRLNLSYSKQLSRIPDI-SLAFNIER 120 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~ 120 (566)
.+..|.+.++.+.+..... .+.++++|||.+|.|.. +..-..+||.|++|+|+.|++...+..+ ....||+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4446667777665544321 67899999999999983 4444689999999999999877666554 35678999
Q ss_pred EEeeCCCCccc-cchhhhhcccCcEEecCCC
Q 037314 121 LDLVGCASLIE-THSSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 121 L~L~~c~~~~~-~~~~~~~l~~L~~L~L~~c 150 (566)
|.|.|....-. ...++..+++++.|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 99988654332 3345666777777777763
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=6.9e-06 Score=56.20 Aligned_cols=38 Identities=45% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeec
Q 037314 307 NLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 307 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 344 (566)
+|++|++++|+++++|..++.+++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444444444444444444444444433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=8.1e-06 Score=55.87 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=35.5
Q ss_pred CCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCCC
Q 037314 329 PSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPEL 371 (566)
Q Consensus 329 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 371 (566)
++|++|++++|+|+.+|..+.++++|+.|++++|+ +++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 47999999999999999889999999999999996 6666653
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=5.8e-07 Score=94.85 Aligned_cols=124 Identities=23% Similarity=0.157 Sum_probs=76.8
Q ss_pred CcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEEEccC
Q 037314 209 LVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDR 287 (566)
Q Consensus 209 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~ 287 (566)
|...+.++ +.+..+..++.-++.|+.|+|++|.....- .+..+++|++||++.|.+..+|. +..++. |+.|.+++
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 33344443 233444555666667777777776544332 56667777777888777777765 333444 77777777
Q ss_pred CCCCCCCCCCCcccccCCCCCcEEecccCCCcccC--CCCCCCCCCCEEeccCCCCe
Q 037314 288 CKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP--ESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 288 ~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 342 (566)
|.... +..+.++.+|+.||+++|-+.+.. ..+..+..|+.|.|.||.+-
T Consensus 242 N~l~t------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 76332 333566777778888887766632 33455667777788877654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=4.6e-06 Score=88.28 Aligned_cols=152 Identities=24% Similarity=0.261 Sum_probs=84.1
Q ss_pred CccccCCCCCcEEeccCCCCcccccccccCC-CCCcEEeccCCcCCccccc-------ccC---CCCccceeccCCcccc
Q 037314 200 PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNL-KSLVNLYLSGCLKLEKLPE-------EIG---NLESLEVMLANETAIS 268 (566)
Q Consensus 200 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l-~~L~~L~ls~~~~l~~~p~-------~l~---~l~~L~~L~l~~n~l~ 268 (566)
|-.|..+..|++|.+.+|..... ..+..+ ..|++|.-.. + +..+.+ .+. ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-S-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-c-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 55677788999999998865431 011111 1233332111 0 000000 011 1234555566667776
Q ss_pred ccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCC-CCCCCCCEEeccCCCCeecCcc
Q 037314 269 QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL-GRSPSLNYLNLAENDFEKIPSS 347 (566)
Q Consensus 269 ~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~~ 347 (566)
.+..++.-++.|+.|++++|+... ...+..+++|+.|||++|.+..+|..- ..+ .|+.|.|++|.++++- .
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-g 249 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR-G 249 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-h
Confidence 666667777777777777776432 223556677777777777777666322 222 2677777777666664 4
Q ss_pred hhcCCCCcEecccccc
Q 037314 348 IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 348 i~~l~~L~~L~L~~c~ 363 (566)
+.+|.+|+.||+++|-
T Consensus 250 ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHhhhhhhccchhHhh
Confidence 6666666666666653
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3e-05 Score=85.62 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=88.1
Q ss_pred CCCcEEeccCCCCcc-cccccc-cCCCCCcEEeccCCcCC-cccccccCCCCccceeccCCccccccCcccccCCCCCEE
Q 037314 207 SRLVHLDLTNCSRLK-SVSSSL-CNLKSLVNLYLSGCLKL-EKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESL 283 (566)
Q Consensus 207 ~~L~~L~L~~~~~l~-~lp~~l-~~l~~L~~L~ls~~~~l-~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 283 (566)
.+|++|++++..... .-|..+ ..||+|+.|.++|-... +++.....++++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 355555555533221 111122 34677777777663332 22344456677777788888777766 567778888888
Q ss_pred EccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-------CCCCCCCCCCEEeccCCCCe--ecCcchhcCCCC
Q 037314 284 SFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-------ESLGRSPSLNYLNLAENDFE--KIPSSIKQLSKL 354 (566)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-------~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L 354 (566)
.+.+-..... ..+-.+-++++|+.||+|.......+ +.-..+|.|+.||.|++.+. .+...+..-++|
T Consensus 201 ~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 201 SMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred hccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 7776553221 12333566788888888876544322 33345889999999988865 222233444555
Q ss_pred cEecccc
Q 037314 355 LFLTLRN 361 (566)
Q Consensus 355 ~~L~L~~ 361 (566)
+.+.+-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 5555443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=6.3e-05 Score=71.95 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCCcEEecccCCCcccC--CCCCCCCCCCEEeccCCCCeecC--cchhcCCCCcEecccccccCCcCCCCCCCCeEeecC
Q 037314 306 QNLEYLSLVDCGITELP--ESLGRSPSLNYLNLAENDFEKIP--SSIKQLSKLLFLTLRNCKRLQSLPELPCGSTIFARH 381 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~L~~~~ 381 (566)
+++..+-+..|.+.+.. .....++.+-.|+|+.+++.+.. +.+..++.|..|.+++++....+.. ...+.+-+..
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~-~err~llIaR 277 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG-GERRFLLIAR 277 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC-CcceEEEEee
Confidence 44444555555444422 33445566667777777776443 2466777788888877776555442 1113444555
Q ss_pred CcCccccc
Q 037314 382 CTSLETLS 389 (566)
Q Consensus 382 c~~L~~l~ 389 (566)
.+.++.+.
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 55555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=6.8e-05 Score=82.81 Aligned_cols=129 Identities=26% Similarity=0.205 Sum_probs=87.1
Q ss_pred cccCcEEecCCCCCCC-ccCCcC--CCCCccEEEecCCCCCC----cCCcccCCCCEEecCCCCCcccCccccCCCCCcE
Q 037314 139 LNKLVFLNLGHCISLK-SLPTGI--NLDSLKVLYLGGCSNLK----RFPEISCNIEHLDLKETAIEELPSSIGNLSRLVH 211 (566)
Q Consensus 139 l~~L~~L~L~~c~~l~-~lp~~~--~l~~L~~L~L~~~~~l~----~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 211 (566)
-.+|++|++++...+. .-|..+ .+|+|+.|.+.|-.... .+-..+++|..||+++++++.+ ..++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3567777777733321 111112 68888888888733221 2334567899999999999988 67899999999
Q ss_pred EeccCCCCcc-cccccccCCCCCcEEeccCCcCCccc------ccccCCCCccceeccCCcccc
Q 037314 212 LDLTNCSRLK-SVSSSLCNLKSLVNLYLSGCLKLEKL------PEEIGNLESLEVMLANETAIS 268 (566)
Q Consensus 212 L~L~~~~~l~-~lp~~l~~l~~L~~L~ls~~~~l~~~------p~~l~~l~~L~~L~l~~n~l~ 268 (566)
|.+.+-.... ..-..+.+|++|+.||+|.-...... -+.-..+++|+.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988743332 11235678999999999986554322 122345889999999988776
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=1.8e-05 Score=67.10 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=72.1
Q ss_pred CcEEeccCCcCC--cccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcE
Q 037314 233 LVNLYLSGCLKL--EKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEY 310 (566)
Q Consensus 233 L~~L~ls~~~~l--~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~ 310 (566)
+..++|+.|... ...+..+.....|+..++++|.++.+|+.+. ..++.++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft---------------------------~kf~t~t~ 81 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT---------------------------IKFPTATT 81 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh---------------------------hccchhhh
Confidence 445556665432 1222333344455555666666665554332 23457888
Q ss_pred EecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 311 LSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 311 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
|++++|.++++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..++.
T Consensus 82 lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 82 LNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 89999999999988999999999999999999888888778888888887765
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.0006 Score=61.95 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCC-CCCCccEEEeeCCCCcccc-chhhhhcccCcEEe
Q 037314 69 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDIS-LAFNIERLDLVGCASLIET-HSSIQHLNKLVFLN 146 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~-~l~~L~~L~L~~c~~~~~~-~~~~~~l~~L~~L~ 146 (566)
..+...+||++|.+..+ ..+..++.|.+|.|.+|.+...-|++. .+++|..|.|.+|...... -..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34555556666655554 334555556666666655544444433 2445666666655432210 12244455666666
Q ss_pred cCCCCCCCccCC---c-C-CCCCccEEEecCC
Q 037314 147 LGHCISLKSLPT---G-I-NLDSLKVLYLGGC 173 (566)
Q Consensus 147 L~~c~~l~~lp~---~-~-~l~~L~~L~L~~~ 173 (566)
+-+|. ...... . + .+++|++||+++-
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 55532 221111 0 1 5777777777663
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=5.8e-05 Score=81.01 Aligned_cols=106 Identities=27% Similarity=0.371 Sum_probs=58.2
Q ss_pred cccCcEEecCCCCCCCcc---CCcCCCCCccEEEecCC-CCCCcC-------CcccCCCCEEecCCCC-Cccc--Ccccc
Q 037314 139 LNKLVFLNLGHCISLKSL---PTGINLDSLKVLYLGGC-SNLKRF-------PEISCNIEHLDLKETA-IEEL--PSSIG 204 (566)
Q Consensus 139 l~~L~~L~L~~c~~l~~l---p~~~~l~~L~~L~L~~~-~~l~~~-------~~~~~~L~~L~L~~~~-i~~l--p~~~~ 204 (566)
++.|+.|.+.+|..+... +....++.|+.|++++| ...... .....+++.|+++.+. +.+. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666666555542 22225666666666662 222211 1223455666666554 3321 11123
Q ss_pred CCCCCcEEeccCCCCcc--cccccccCCCCCcEEeccCCcCC
Q 037314 205 NLSRLVHLDLTNCSRLK--SVSSSLCNLKSLVNLYLSGCLKL 244 (566)
Q Consensus 205 ~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~ls~~~~l 244 (566)
.+++|+.|.+.+|..+. .+-.....+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 37788888877776432 23334456777888888888765
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.02 E-value=0.00016 Score=68.30 Aligned_cols=232 Identities=16% Similarity=0.133 Sum_probs=119.9
Q ss_pred ccceEEEeCCccCCC-----CCCCC-CCCCeEEEEcCCCCCc----ccc-------ccCCCCCCCcEEecCCCCCCCCCC
Q 037314 48 NELRYFYWDGYPLKS-----LPSKN-IPEHLVSLEMPHSNIE----QLW-------NGVQNLAALKRLNLSYSKQLSRIP 110 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~i~----~l~-------~~~~~l~~L~~L~Ls~~~~l~~~p 110 (566)
+.+..++++||.+.. +...+ +-++|+..+++.-... +++ +.+-++++|+.++||.|.+-...|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 456666666665431 21111 4567777777654322 222 345678888888888888776665
Q ss_pred C-----CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCc----
Q 037314 111 D-----ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPE---- 181 (566)
Q Consensus 111 ~-----l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~---- 181 (566)
. ++..++|++|.+++|..-..-...++. .|.+ |..+++.. +-+.|++.+...|.. ...+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nKKaa------~kp~Le~vicgrNRl-engs~~~~a 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNKKAA------DKPKLEVVICGRNRL-ENGSKELSA 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHhhhc------cCCCceEEEeccchh-ccCcHHHHH
Confidence 3 677888888888887543222222221 0000 00111111 233445554444321 11111
Q ss_pred ----ccCCCCEEecCCCCCcc--c----CccccCCCCCcEEeccCCCCcc----cccccccCCCCCcEEeccCCcCCccc
Q 037314 182 ----ISCNIEHLDLKETAIEE--L----PSSIGNLSRLVHLDLTNCSRLK----SVSSSLCNLKSLVNLYLSGCLKLEKL 247 (566)
Q Consensus 182 ----~~~~L~~L~L~~~~i~~--l----p~~~~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~ls~~~~l~~~ 247 (566)
.-.+|+.+.+..|.|+. + --.+..+++|+.||+.+|.... .+...++..+.|++|.+.+|-....-
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 11255566666665542 1 1124566778888887776543 23344556666788888777554321
Q ss_pred ----ccccC--CCCccceeccCCcccc--c-----cCcc-cccCCCCCEEEccCCCC
Q 037314 248 ----PEEIG--NLESLEVMLANETAIS--Q-----VPPS-IACLNRVESLSFDRCKG 290 (566)
Q Consensus 248 ----p~~l~--~l~~L~~L~l~~n~l~--~-----l~~~-l~~l~~L~~L~l~~~~~ 290 (566)
-..+. ..++|..|...+|.+. . ++.. -..++-|..|.+.+|..
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 11111 2456677766666554 1 1111 12356666677776663
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=4.7e-05 Score=64.65 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=51.4
Q ss_pred ceEEEeCCccCCCCCCCC----CCCCeEEEEcCCCCCccccccC-CCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEee
Q 037314 50 LRYFYWDGYPLKSLPSKN----IPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLV 124 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~ 124 (566)
+-.++++.|++..++... ...+|...++++|.++++|+.+ ...+.++.|+|++|++...+.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344455555555444322 3345555555555555555444 33345555555555533222235555555555555
Q ss_pred CCCCccccchhhhhcccCcEEecCCCCCCCccCC
Q 037314 125 GCASLIETHSSIQHLNKLVFLNLGHCISLKSLPT 158 (566)
Q Consensus 125 ~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~ 158 (566)
.|.... .|..+..+.+|..|+.-+ +....+|.
T Consensus 109 ~N~l~~-~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 109 FNPLNA-EPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred cCcccc-chHHHHHHHhHHHhcCCC-CccccCcH
Confidence 554332 233334455555555544 33334443
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.98 E-value=0.00012 Score=69.08 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCCcEEecccCCCcc------cCCCCCCCCCCCEEeccCCCCeecC-----cchhcCCCCcEecccccc
Q 037314 306 QNLEYLSLVDCGITE------LPESLGRSPSLNYLNLAENDFEKIP-----SSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L~L~~c~ 363 (566)
..|+.+.+..|.|.. +-..+..+.+|+.|||.+|-|+..- ..+..-+.|+.|.+..|-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 456666666665543 1123455666777777777665221 122223446666666663
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0013 Score=59.86 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=83.0
Q ss_pred CCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccC-CCCCCCcEEecCCCCCCC--CCCCCCCCCCccEEE
Q 037314 46 LFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYSKQLS--RIPDISLAFNIERLD 122 (566)
Q Consensus 46 l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~--~~p~l~~l~~L~~L~ 122 (566)
.-+....++++.|.+..++-.-.+++|.+|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+.. ++..+..+|.|++|.
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 33567788999999888887669999999999999999997766 567889999999997542 344478899999999
Q ss_pred eeCCCCccccc---hhhhhcccCcEEecCCC
Q 037314 123 LVGCASLIETH---SSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 123 L~~c~~~~~~~---~~~~~l~~L~~L~L~~c 150 (566)
+-+|.....-. -.+..+++|++||...-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99987654321 23567899999999763
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=0.00014 Score=77.91 Aligned_cols=236 Identities=26% Similarity=0.260 Sum_probs=111.0
Q ss_pred CCCCCcEEecCCCCCCCCC---CCCCCCCCccEEEeeCC-CCccccc----hhhhhcccCcEEecCCCCCCCccCCcC--
Q 037314 91 NLAALKRLNLSYSKQLSRI---PDISLAFNIERLDLVGC-ASLIETH----SSIQHLNKLVFLNLGHCISLKSLPTGI-- 160 (566)
Q Consensus 91 ~l~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~c-~~~~~~~----~~~~~l~~L~~L~L~~c~~l~~lp~~~-- 160 (566)
..+.|+.+.+..+...... +....+++|+.|++++| ......+ .....+++|+.|+++.|..++..--..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677777777776655541 33556777777777763 2222211 234456777777777766543221111
Q ss_pred -CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCccc--ccccccCCCCCcEEe
Q 037314 161 -NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKS--VSSSLCNLKSLVNLY 237 (566)
Q Consensus 161 -~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~ 237 (566)
.+++|++|.+.+|..++. . .+-.....++.|++|++++|..... +.....++++|+.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~---------------~---gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD---------------E---GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hhCCCcceEccCCCCccch---------------h---HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 367777777777654221 0 1111233455566666666655421 222233344444444
Q ss_pred ccCCcCCcccccccCCCCccceeccCCccc----cccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEec
Q 037314 238 LSGCLKLEKLPEEIGNLESLEVMLANETAI----SQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSL 313 (566)
Q Consensus 238 ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l----~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L 313 (566)
+..+.. +..++.+.+.+... ......+..+++++.+.+..+. ...... .-.+.+++.|. ..+
T Consensus 328 ~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~--~~~l~gc~~l~-~~l 393 (482)
T KOG1947|consen 328 LLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL--ELSLRGCPNLT-ESL 393 (482)
T ss_pred hhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--HHHhcCCcccc-hHH
Confidence 333221 12222222221111 0111134456666666666655 221000 01123333331 111
Q ss_pred ccCCCcccCCCCCCCCCCCEEeccCCCCeecCc--chhc-CCCCcEecccccccCC
Q 037314 314 VDCGITELPESLGRSPSLNYLNLAENDFEKIPS--SIKQ-LSKLLFLTLRNCKRLQ 366 (566)
Q Consensus 314 ~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~-l~~L~~L~L~~c~~L~ 366 (566)
.. ......+++.|+++.+...+.-. .... +..++.+++.+|+.+.
T Consensus 394 ~~--------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 394 EL--------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HH--------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 11 11122237888888887543321 1111 6778888888877543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.38 E-value=0.013 Score=50.41 Aligned_cols=105 Identities=17% Similarity=0.312 Sum_probs=53.4
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcC-CCccCCCccceEEEeCCccCCCCCCCC--CCCCeEEEEcCCCCCcc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHS-RYLESLFNELRYFYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQ 84 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~ 84 (566)
.+...+|.++++|+.+.+... . ..++ ..+... .+|+.+.+... ++.++... .++.|+.+.++. .+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~------~-~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNT------I-KKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST---------EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred EECHHHHhCCCCCCEEEECCC------e-eEeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 366788999999999888651 2 2343 344454 36888888764 77766433 565778887765 5554
Q ss_pred ccc-cCCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeC
Q 037314 85 LWN-GVQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVG 125 (566)
Q Consensus 85 l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~ 125 (566)
+.. .+..+++|+.+++..+ ...++ .|.+. +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 543 4566777777777553 23332 25565 677666654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0026 Score=60.28 Aligned_cols=80 Identities=25% Similarity=0.284 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCCccccccCCCCCCCcEEecCCC--CCCCCCCC-CCCCCCccEEEeeCCCCcc-ccchhhhhcccCcEEe
Q 037314 71 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYS--KQLSRIPD-ISLAFNIERLDLVGCASLI-ETHSSIQHLNKLVFLN 146 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~ 146 (566)
.|+.|++.+..++.+ ..+-.|++||.|+++.| .....++. ...+|+|++|++++|++.. .-...+..+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 344444444444333 23334445555555555 22222222 2233555555555554321 1111233344445555
Q ss_pred cCCCC
Q 037314 147 LGHCI 151 (566)
Q Consensus 147 L~~c~ 151 (566)
+.+|.
T Consensus 123 l~n~~ 127 (260)
T KOG2739|consen 123 LFNCS 127 (260)
T ss_pred cccCC
Confidence 55543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0033 Score=59.59 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCCCCccEEEeeCC--CCccccchhhhhcccCcEEecCCCCCCC---ccCCcCCCCCccEEEecCCC
Q 037314 112 ISLAFNIERLDLVGC--ASLIETHSSIQHLNKLVFLNLGHCISLK---SLPTGINLDSLKVLYLGGCS 174 (566)
Q Consensus 112 l~~l~~L~~L~L~~c--~~~~~~~~~~~~l~~L~~L~L~~c~~l~---~lp~~~~l~~L~~L~L~~~~ 174 (566)
+..+++|++|.++.| .....++.....+++|++|++++| +++ +++..-.+++|..|++..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 344455555555554 223333333334455555555552 222 22222244455555555543
No 68
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=95.63 E-value=0.0083 Score=32.92 Aligned_cols=20 Identities=55% Similarity=1.081 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCCccccccCC
Q 037314 71 HLVSLEMPHSNIEQLWNGVQ 90 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~~~~ 90 (566)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999864
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0056 Score=34.85 Aligned_cols=19 Identities=47% Similarity=0.847 Sum_probs=10.5
Q ss_pred CCEEeccCCCCeecCcchh
Q 037314 331 LNYLNLAENDFEKIPSSIK 349 (566)
Q Consensus 331 L~~L~Ls~n~l~~lp~~i~ 349 (566)
|++|+|++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555666665555555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.00046 Score=65.60 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=63.7
Q ss_pred cCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc--cCCCCC
Q 037314 16 KMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN--GVQNLA 93 (566)
Q Consensus 16 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~--~~~~l~ 93 (566)
.+.+.+.|++.++. -..+.+ ...+| .|+.|.++-|.++++.+...+++|++|.|..|.|..+-+ -+++++
T Consensus 17 dl~~vkKLNcwg~~----L~DIsi---c~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG----LDDISI---CEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCC----ccHHHH---HHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 35566777777741 001111 23344 678888888888888777788888888888888876643 357788
Q ss_pred CCcEEecCCCCCCCCCCC------CCCCCCccEEE
Q 037314 94 ALKRLNLSYSKQLSRIPD------ISLAFNIERLD 122 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~p~------l~~l~~L~~L~ 122 (566)
+|+.|-|..|...+.-+. +.-+|||++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888877775554432 44456666654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.37 E-value=0.17 Score=43.29 Aligned_cols=52 Identities=25% Similarity=0.423 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEEee
Q 037314 70 EHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLDLV 124 (566)
Q Consensus 70 ~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~ 124 (566)
.+|+.+.+.. .++.+.+ .+..+.+|+.+++..+ ...+++ |..+++|+.+.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 3444444442 3333332 2344444444444432 222222 4444444444443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.0025 Score=60.78 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=38.8
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCC--CCCCCCCCCCccEEEeeCCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLS--RIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~--~~p~l~~l~~L~~L~L~~c~ 127 (566)
.+-|+.-||.+.++.---.++.|+.|.|+-|+|+.+ +.+..+.+|+.|.|..|.+.. ++.-+.++|+|+.|.|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 444555555555544333555555555555555555 334555555555555543211 11114445555555555444
Q ss_pred Ccc
Q 037314 128 SLI 130 (566)
Q Consensus 128 ~~~ 130 (566)
-.+
T Consensus 100 Cc~ 102 (388)
T KOG2123|consen 100 CCG 102 (388)
T ss_pred ccc
Confidence 333
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.12 E-value=0.029 Score=29.65 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=5.2
Q ss_pred CCCEEeccCCCCeec
Q 037314 330 SLNYLNLAENDFEKI 344 (566)
Q Consensus 330 ~L~~L~Ls~n~l~~l 344 (566)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.97 E-value=0.025 Score=32.10 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=8.9
Q ss_pred eEEEEcCCCCCccccccC
Q 037314 72 LVSLEMPHSNIEQLWNGV 89 (566)
Q Consensus 72 L~~L~L~~~~i~~l~~~~ 89 (566)
|++|++++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555544443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.089 Score=27.76 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=9.6
Q ss_pred CCCcEEecccCCCcccC
Q 037314 306 QNLEYLSLVDCGITELP 322 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~lp 322 (566)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36788888888877665
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.80 E-value=0.0014 Score=69.46 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=92.2
Q ss_pred cccCCCCCcEEeccCCCCccc----ccccccCC-CCCcEEeccCCcCCc----ccccccCCCCccceeccCCcccc----
Q 037314 202 SIGNLSRLVHLDLTNCSRLKS----VSSSLCNL-KSLVNLYLSGCLKLE----KLPEEIGNLESLEVMLANETAIS---- 268 (566)
Q Consensus 202 ~~~~l~~L~~L~L~~~~~l~~----lp~~l~~l-~~L~~L~ls~~~~l~----~~p~~l~~l~~L~~L~l~~n~l~---- 268 (566)
.+...+.|+.|++++|..... +-..+... ..|++|++..|.... .+.+.+.....++.+++..|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 344555566666666544321 11112222 445566666665443 23445555667777777777664
Q ss_pred -ccCcccc----cCCCCCEEEccCCCCCCCCCCCCcccccCCCC-CcEEecccCCCcc-----cCCCCCCC-CCCCEEec
Q 037314 269 -QVPPSIA----CLNRVESLSFDRCKGRPPLMSLKLPILFQLQN-LEYLSLVDCGITE-----LPESLGRS-PSLNYLNL 336 (566)
Q Consensus 269 -~l~~~l~----~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~-L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~L 336 (566)
.++..+. ...++++|.+.+|..........-..+...++ +..|++.+|.+.+ +...+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1222333 35677777777776442211000011333444 6668888887765 33455555 67888888
Q ss_pred cCCCCe-----ecCcchhcCCCCcEeccccccc
Q 037314 337 AENDFE-----KIPSSIKQLSKLLFLTLRNCKR 364 (566)
Q Consensus 337 s~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 364 (566)
+.|.|+ .+...+..++.++.|.+++|+.
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 888876 3455667777888888888763
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.51 E-value=0.29 Score=28.88 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=14.2
Q ss_pred CCCCCEEeccCCCCeecCcc
Q 037314 328 SPSLNYLNLAENDFEKIPSS 347 (566)
Q Consensus 328 l~~L~~L~Ls~n~l~~lp~~ 347 (566)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777765
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.51 E-value=0.29 Score=28.88 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=14.2
Q ss_pred CCCCCEEeccCCCCeecCcc
Q 037314 328 SPSLNYLNLAENDFEKIPSS 347 (566)
Q Consensus 328 l~~L~~L~Ls~n~l~~lp~~ 347 (566)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777765
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=0.23 Score=45.54 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=24.5
Q ss_pred CCCCCCEEeccCCC-Cee-cCcchhcCCCCcEeccccc
Q 037314 327 RSPSLNYLNLAEND-FEK-IPSSIKQLSKLLFLTLRNC 362 (566)
Q Consensus 327 ~l~~L~~L~Ls~n~-l~~-lp~~i~~l~~L~~L~L~~c 362 (566)
..++|+.|+|++|. |++ --.++..+++|+.|.+.+-
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 35678888888876 653 2346777778887777653
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.85 E-value=0.0053 Score=65.16 Aligned_cols=90 Identities=27% Similarity=0.281 Sum_probs=52.6
Q ss_pred CCCccceeccCCccccc-----cCcccccCCC-CCEEEccCCCCCCCCCCCCcccccCC-CCCcEEecccCCCcc-----
Q 037314 253 NLESLEVMLANETAISQ-----VPPSIACLNR-VESLSFDRCKGRPPLMSLKLPILFQL-QNLEYLSLVDCGITE----- 320 (566)
Q Consensus 253 ~l~~L~~L~l~~n~l~~-----l~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~~~~l-~~L~~L~L~~~~l~~----- 320 (566)
...++++|.+.++.++. +-..+...+. +..|++..|...........|.+..+ ..++.++++.|.+++
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 35566666666665541 1112333344 55566666653322111112234445 677888888888876
Q ss_pred cCCCCCCCCCCCEEeccCCCCe
Q 037314 321 LPESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 321 lp~~l~~l~~L~~L~Ls~n~l~ 342 (566)
+...+..++.+++|.++.|.+.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccc
Confidence 4556677788888888888865
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.29 E-value=0.84 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=10.3
Q ss_pred CCeEEEEcCCCCCcccccc
Q 037314 70 EHLVSLEMPHSNIEQLWNG 88 (566)
Q Consensus 70 ~~L~~L~L~~~~i~~l~~~ 88 (566)
.+|+.|+|.+|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.29 E-value=0.84 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=10.3
Q ss_pred CCeEEEEcCCCCCcccccc
Q 037314 70 EHLVSLEMPHSNIEQLWNG 88 (566)
Q Consensus 70 ~~L~~L~L~~~~i~~l~~~ 88 (566)
.+|+.|+|.+|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=0.81 Score=42.10 Aligned_cols=89 Identities=25% Similarity=0.367 Sum_probs=58.2
Q ss_pred CCCCCC-CCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCC--CCCC-CCCCccEEEeeCCCCccccc-hh
Q 037314 62 SLPSKN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRI--PDIS-LAFNIERLDLVGCASLIETH-SS 135 (566)
Q Consensus 62 ~lp~~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~--p~l~-~l~~L~~L~L~~c~~~~~~~-~~ 135 (566)
++|... .-..++.++.+++.|... -+-+.+++.++.|.+.+|.....- .-++ -+++|+.|+|++|...+.-. ..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 556443 344788888888888733 245677777888888877755431 1122 46788888888887766432 34
Q ss_pred hhhcccCcEEecCCC
Q 037314 136 IQHLNKLVFLNLGHC 150 (566)
Q Consensus 136 ~~~l~~L~~L~L~~c 150 (566)
+..+++|+.|.+.+-
T Consensus 172 L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHhhhhHHHHhcCc
Confidence 666777777777663
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.95 E-value=1.4 Score=26.06 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=11.1
Q ss_pred CCCEEeccCCCCeecCc
Q 037314 330 SLNYLNLAENDFEKIPS 346 (566)
Q Consensus 330 ~L~~L~Ls~n~l~~lp~ 346 (566)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666664
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.69 E-value=0.058 Score=50.37 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=42.9
Q ss_pred CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEec
Q 037314 68 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNL 147 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L 147 (566)
..++.+.||++.+++..+-..++.+..|..||++.|++-....|++....++.+++..| .....|.+++..+.++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhh
Confidence 44455555555555555555555555555555555543333334554444555554443 23445555555666665555
Q ss_pred CCC
Q 037314 148 GHC 150 (566)
Q Consensus 148 ~~c 150 (566)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 553
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.91 E-value=0.07 Score=49.84 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=48.9
Q ss_pred ccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEeccccccc
Q 037314 302 LFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKR 364 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 364 (566)
++.++.|..|+++.+.+.-+|..++....+..+++..|+.+..|.+.+..+.++++++.+++.
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 344556777777777777788888888888888888888888888888888888888877763
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.25 E-value=3.8 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=10.5
Q ss_pred CCCCcEecccccccCC
Q 037314 351 LSKLLFLTLRNCKRLQ 366 (566)
Q Consensus 351 l~~L~~L~L~~c~~L~ 366 (566)
+++|++|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3567777777776554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.09 E-value=5.4 Score=23.66 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=9.6
Q ss_pred CCCCEEeccCCCCeec
Q 037314 329 PSLNYLNLAENDFEKI 344 (566)
Q Consensus 329 ~~L~~L~Ls~n~l~~l 344 (566)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.46 E-value=3.3 Score=23.68 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=6.2
Q ss_pred CCccEEEeeCCCC
Q 037314 116 FNIERLDLVGCAS 128 (566)
Q Consensus 116 ~~L~~L~L~~c~~ 128 (566)
++|++|+|++|..
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4556666666553
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.65 E-value=8.6 Score=40.91 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCCCCcccc---ccCCCCCCCcEEecCCCCCCC----CCCCCCCCCCccEEEeeCCCCccc
Q 037314 68 IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYSKQLS----RIPDISLAFNIERLDLVGCASLIE 131 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~Ls~~~~l~----~~p~l~~l~~L~~L~L~~c~~~~~ 131 (566)
+.+.+..++|++|++..+- .-.+.-|+|+.|+|++|.... +++.+++ ..|++|-+.||.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 5567777888888777652 223566788888888872211 1222333 3477888888776543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.13 E-value=13 Score=22.29 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=10.0
Q ss_pred CCCCEEeccCCCCe
Q 037314 329 PSLNYLNLAENDFE 342 (566)
Q Consensus 329 ~~L~~L~Ls~n~l~ 342 (566)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777764
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=41.36 E-value=51 Score=22.08 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=20.0
Q ss_pred CCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCC
Q 037314 45 SLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPH 79 (566)
Q Consensus 45 ~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~ 79 (566)
.+|+++++|.+.+.--+.+....-+.+|++|.+.+
T Consensus 9 ~iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 9 SIPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred eeCCCCeEEEECCccCccCCCCccCCCceEEEeeC
Confidence 45667777777443333444444556677766643
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.52 E-value=23 Score=37.90 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCCcEEecccCCCcccC---CCCCCCCCCCEEeccCC--CCeecCcchh--cCCCCcEecccccccCCc
Q 037314 306 QNLEYLSLVDCGITELP---ESLGRSPSLNYLNLAEN--DFEKIPSSIK--QLSKLLFLTLRNCKRLQS 367 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~lp---~~l~~l~~L~~L~Ls~n--~l~~lp~~i~--~l~~L~~L~L~~c~~L~~ 367 (566)
+.+..++|++|++..+. .--...|.|+.|+|++| .+...+ ++. +...|++|.+.+|+..+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 44555556665554422 22234456666666666 232222 121 223456666666664433
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.10 E-value=2.7e+02 Score=29.57 Aligned_cols=80 Identities=15% Similarity=-0.056 Sum_probs=40.3
Q ss_pred cceEEEeCCccCC-CCCCCC----CCCCeEEEEcCCCCCc--cccccC--CCCCCCcEEecCCCCCC----CCCCC----
Q 037314 49 ELRYFYWDGYPLK-SLPSKN----IPEHLVSLEMPHSNIE--QLWNGV--QNLAALKRLNLSYSKQL----SRIPD---- 111 (566)
Q Consensus 49 ~Lr~L~l~~~~l~-~lp~~~----~~~~L~~L~L~~~~i~--~l~~~~--~~l~~L~~L~Ls~~~~l----~~~p~---- 111 (566)
.+.+++++.++.+ .+|... ..--++.++.+...+. .+|..+ +.-.+|...+++.|... .+.++
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 4566666666655 344322 2234455555555444 444432 44556666666665422 12221
Q ss_pred -CCCCCCccEEEeeCCCCc
Q 037314 112 -ISLAFNIERLDLVGCASL 129 (566)
Q Consensus 112 -l~~l~~L~~L~L~~c~~~ 129 (566)
++.-+++ +|++.+|..-
T Consensus 295 ~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred ccCcCccc-ccccccccCc
Confidence 4555666 6666665443
Done!