Query 037314
Match_columns 566
No_of_seqs 561 out of 4844
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 4.3E-36 1.5E-40 330.3 35.1 346 8-363 47-460 (606)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-36 4.2E-41 343.2 20.9 271 11-289 240-525 (768)
3 4eco_A Uncharacterized protein 100.0 1E-35 3.5E-40 328.5 26.1 343 60-413 195-600 (636)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-35 4.5E-40 326.4 25.7 428 8-469 46-572 (606)
5 4eco_A Uncharacterized protein 100.0 5.7E-36 2E-40 330.5 21.9 335 38-384 197-599 (636)
6 3rgz_A Protein brassinosteroid 100.0 1.1E-35 3.7E-40 335.5 23.8 289 49-342 248-551 (768)
7 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-34 2.6E-38 316.7 35.7 137 8-150 39-181 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 2.9E-35 9.9E-40 321.1 18.6 423 8-469 42-546 (570)
9 4ecn_A Leucine-rich repeat pro 100.0 6.9E-34 2.4E-38 320.1 28.1 341 62-413 439-840 (876)
10 2z81_A CD282 antigen, TOLL-lik 100.0 6.8E-35 2.3E-39 316.8 18.4 414 18-470 26-526 (549)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-33 7.5E-38 308.7 29.2 386 8-414 70-559 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-33 5.9E-38 320.7 28.9 389 9-410 39-536 (844)
13 4ecn_A Leucine-rich repeat pro 100.0 4.3E-34 1.5E-38 321.8 23.6 334 39-384 440-839 (876)
14 3t6q_A CD180 antigen; protein- 100.0 1.6E-32 5.5E-37 301.8 31.9 409 7-438 70-555 (606)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-32 4.2E-37 297.1 24.9 345 8-370 35-461 (520)
16 2z63_A TOLL-like receptor 4, v 100.0 6E-32 2.1E-36 294.9 27.3 385 8-411 66-529 (570)
17 3v47_A TOLL-like receptor 5B a 100.0 1.5E-31 5.2E-36 283.6 26.3 314 46-363 28-406 (455)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-32 2.4E-36 294.1 23.6 344 9-370 67-490 (562)
19 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-30 4.9E-35 290.2 33.4 407 8-434 87-613 (680)
20 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-32 2.9E-36 292.5 20.9 382 8-413 40-510 (549)
21 4fmz_A Internalin; leucine ric 100.0 1.5E-30 5E-35 266.0 28.2 298 49-363 45-344 (347)
22 1o6v_A Internalin A; bacterial 100.0 1.8E-30 6.3E-35 276.2 29.7 339 15-382 43-385 (466)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-30 5.4E-35 296.3 29.7 334 16-363 22-437 (844)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-30 3.7E-35 281.9 26.8 366 21-413 3-481 (520)
25 1o6v_A Internalin A; bacterial 100.0 6.5E-30 2.2E-34 272.0 30.5 335 48-410 46-385 (466)
26 1jl5_A Outer protein YOPM; leu 100.0 1.5E-29 5.2E-34 267.5 29.4 322 11-374 27-378 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 5.1E-30 1.7E-34 271.8 25.3 351 50-411 12-406 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-29 5E-34 275.7 29.4 369 18-412 31-509 (562)
29 2id5_A Lingo-1, leucine rich r 100.0 1.4E-29 4.8E-34 270.2 27.3 291 47-363 31-331 (477)
30 4fmz_A Internalin; leucine ric 100.0 4.1E-29 1.4E-33 255.2 26.5 307 12-342 38-346 (347)
31 3o6n_A APL1; leucine-rich repe 100.0 4.8E-29 1.6E-33 259.0 24.4 148 49-197 46-199 (390)
32 3o6n_A APL1; leucine-rich repe 100.0 1.3E-28 4.5E-33 255.7 26.7 304 16-342 43-352 (390)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3E-28 1E-32 257.8 29.8 304 12-343 36-353 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 1.3E-28 4.6E-33 262.6 25.9 294 18-343 32-334 (477)
35 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-28 1.5E-32 256.5 27.5 305 42-370 37-356 (457)
36 4g8a_A TOLL-like receptor 4; l 100.0 7.7E-29 2.6E-33 273.4 21.7 108 41-149 70-182 (635)
37 1jl5_A Outer protein YOPM; leu 100.0 1.8E-27 6.2E-32 251.6 30.5 316 18-381 91-425 (454)
38 3oja_B Anopheles plasmodium-re 100.0 3.3E-28 1.1E-32 266.8 24.7 297 49-363 52-356 (597)
39 3oja_B Anopheles plasmodium-re 100.0 8.3E-28 2.8E-32 263.5 26.6 304 16-342 49-358 (597)
40 1xku_A Decorin; proteoglycan, 100.0 2.9E-26 1E-30 232.4 27.6 280 49-363 32-330 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-26 1.2E-30 232.2 26.1 278 49-363 34-331 (332)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-26 8.1E-31 233.4 23.7 287 18-340 33-331 (332)
43 1xku_A Decorin; proteoglycan, 99.9 1.3E-25 4.4E-30 227.7 27.6 262 71-364 32-305 (330)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-26 4.2E-31 233.4 15.4 249 70-369 50-308 (313)
45 4g8a_A TOLL-like receptor 4; l 99.9 7.4E-25 2.5E-29 241.5 26.9 362 8-382 66-577 (635)
46 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.7E-29 234.4 28.6 256 48-363 40-295 (622)
47 4fcg_A Uncharacterized protein 99.9 8.2E-25 2.8E-29 221.5 19.2 217 69-288 80-311 (328)
48 2z80_A TOLL-like receptor 2, v 99.9 5.1E-25 1.8E-29 225.5 16.3 268 50-363 33-312 (353)
49 4fcg_A Uncharacterized protein 99.9 2.6E-24 8.8E-29 217.9 18.8 225 18-271 81-317 (328)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5.3E-29 218.1 15.8 230 93-370 50-286 (313)
51 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-27 9.3E-32 251.2 -7.1 314 49-363 29-409 (461)
52 3o53_A Protein LRIM1, AGAP0063 99.9 4.6E-25 1.6E-29 222.4 9.4 264 71-369 11-279 (317)
53 2z66_A Variable lymphocyte rec 99.9 2.2E-23 7.6E-28 208.9 19.4 243 51-343 10-262 (306)
54 3zyi_A Leucine-rich repeat-con 99.9 8.8E-23 3E-27 216.0 24.8 238 49-289 55-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-22 4.9E-27 221.0 26.3 267 18-351 40-307 (622)
56 3zyj_A Leucine-rich repeat-con 99.9 1E-22 3.5E-27 214.8 23.8 238 49-289 44-290 (440)
57 3zyj_A Leucine-rich repeat-con 99.9 1.7E-22 5.9E-27 213.0 24.9 239 71-363 44-290 (440)
58 1z7x_W Ribonuclease inhibitor; 99.9 3.6E-26 1.2E-30 242.5 -4.4 344 13-363 23-438 (461)
59 3zyi_A Leucine-rich repeat-con 99.9 3.1E-22 1.1E-26 211.8 22.8 222 46-268 73-303 (452)
60 2z80_A TOLL-like receptor 2, v 99.9 8.3E-23 2.8E-27 209.0 16.8 251 68-370 29-294 (353)
61 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-23 3.2E-27 202.2 16.5 216 51-289 14-236 (285)
62 2z66_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 201.8 18.6 211 35-269 18-237 (306)
63 3oja_A Leucine-rich immune mol 99.9 4.2E-23 1.4E-27 220.2 11.7 235 94-363 35-273 (487)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-23 2E-27 207.0 9.5 237 94-365 11-250 (317)
65 1wwl_A Monocyte differentiatio 99.9 2.1E-23 7.2E-28 209.7 4.5 243 90-363 40-307 (312)
66 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-21 2.1E-25 189.1 22.1 208 36-268 23-238 (285)
67 3ogk_B Coronatine-insensitive 99.9 4E-24 1.4E-28 234.1 -5.0 249 11-263 66-350 (592)
68 3oja_A Leucine-rich immune mol 99.9 2.5E-21 8.6E-26 206.5 14.5 217 114-365 32-250 (487)
69 3ogk_B Coronatine-insensitive 99.9 1.4E-23 4.9E-28 229.7 -3.6 366 13-387 107-527 (592)
70 1wwl_A Monocyte differentiatio 99.8 5E-22 1.7E-26 199.6 5.7 243 48-320 43-310 (312)
71 1p9a_G Platelet glycoprotein I 99.8 2.7E-19 9.3E-24 177.6 21.7 200 89-363 6-206 (290)
72 2z62_A TOLL-like receptor 4, v 99.8 2.7E-19 9.3E-24 176.2 21.6 218 53-363 12-235 (276)
73 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.6E-24 185.7 17.2 234 51-316 12-256 (350)
74 2z62_A TOLL-like receptor 4, v 99.8 4.3E-19 1.5E-23 174.8 20.5 210 34-289 17-235 (276)
75 2p1m_B Transport inhibitor res 99.8 3.7E-22 1.3E-26 218.4 -3.5 392 10-412 58-518 (594)
76 1p9a_G Platelet glycoprotein I 99.8 6.5E-19 2.2E-23 174.8 19.7 155 185-370 32-189 (290)
77 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6.3E-23 169.8 22.1 122 49-172 17-142 (270)
78 2o6q_A Variable lymphocyte rec 99.8 1.9E-18 6.3E-23 169.8 22.2 175 185-363 38-216 (270)
79 2xwt_C Thyrotropin receptor; s 99.8 2.3E-19 7.8E-24 172.9 15.2 202 176-382 23-236 (239)
80 3rfs_A Internalin B, repeat mo 99.8 1.2E-19 4.1E-24 178.5 11.6 193 52-289 23-216 (272)
81 2p1m_B Transport inhibitor res 99.8 2E-21 6.7E-26 212.7 -1.5 362 13-384 100-518 (594)
82 2ast_B S-phase kinase-associat 99.8 1.2E-20 4.2E-25 191.3 4.3 201 69-289 46-258 (336)
83 2ast_B S-phase kinase-associat 99.8 2E-20 7E-25 189.7 3.2 220 49-288 48-282 (336)
84 3rfs_A Internalin B, repeat mo 99.8 3.1E-18 1.1E-22 168.4 18.5 202 44-276 38-244 (272)
85 2xwt_C Thyrotropin receptor; s 99.8 9.2E-19 3.2E-23 168.6 14.2 203 60-288 23-236 (239)
86 1h6u_A Internalin H; cell adhe 99.8 2E-18 6.9E-23 172.9 17.1 55 92-149 40-94 (308)
87 1h6u_A Internalin H; cell adhe 99.8 2.8E-18 9.7E-23 171.8 17.8 193 49-272 42-234 (308)
88 4ay9_X Follicle-stimulating ho 99.8 2.2E-18 7.5E-23 175.9 17.0 234 73-360 12-254 (350)
89 4glp_A Monocyte differentiatio 99.8 4.9E-18 1.7E-22 170.3 16.3 229 115-363 63-305 (310)
90 4glp_A Monocyte differentiatio 99.8 5.1E-18 1.7E-22 170.1 14.9 225 68-320 62-308 (310)
91 3m19_A Variable lymphocyte rec 99.8 2.2E-17 7.7E-22 160.2 18.6 173 185-363 15-190 (251)
92 2ca6_A RAN GTPase-activating p 99.8 5.8E-20 2E-24 190.2 -0.5 62 302-363 240-314 (386)
93 2ca6_A RAN GTPase-activating p 99.7 1.6E-19 5.5E-24 186.9 2.3 195 49-243 10-256 (386)
94 3goz_A Leucine-rich repeat-con 99.7 4.4E-19 1.5E-23 182.0 2.1 76 75-150 3-90 (362)
95 3m19_A Variable lymphocyte rec 99.7 1.9E-16 6.3E-21 153.7 19.5 173 49-244 15-192 (251)
96 3cvr_A Invasion plasmid antige 99.7 6.6E-17 2.3E-21 174.2 17.2 184 49-251 60-250 (571)
97 3cvr_A Invasion plasmid antige 99.7 1.1E-16 3.8E-21 172.4 16.5 197 11-232 47-255 (571)
98 1h6t_A Internalin B; cell adhe 99.7 2.1E-16 7.2E-21 156.8 17.2 165 185-363 47-211 (291)
99 3goz_A Leucine-rich repeat-con 99.7 6.8E-18 2.3E-22 173.1 4.4 213 53-266 3-264 (362)
100 4ezg_A Putative uncharacterize 99.6 7.1E-16 2.4E-20 143.8 12.8 149 184-341 44-193 (197)
101 1h6t_A Internalin B; cell adhe 99.6 1.8E-15 6.3E-20 150.0 16.0 145 189-346 73-217 (291)
102 2o6s_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 141.0 15.5 174 51-254 10-188 (208)
103 1m9s_A Internalin B; cell inva 99.6 2.3E-15 8E-20 163.8 16.8 164 186-363 45-208 (605)
104 3e6j_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 142.6 15.1 150 185-363 20-170 (229)
105 1xeu_A Internalin C; cellular 99.6 6E-16 2E-20 151.1 9.9 164 185-363 20-183 (263)
106 2o6s_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 139.3 15.7 172 187-370 10-183 (208)
107 2v9t_B SLIT homolog 2 protein 99.6 4.7E-15 1.6E-19 140.7 15.5 148 187-363 14-163 (220)
108 1m9s_A Internalin B; cell inva 99.6 6.3E-15 2.2E-19 160.4 16.4 125 44-174 40-164 (605)
109 2xot_A Amphoterin-induced prot 99.6 5.1E-15 1.7E-19 151.5 14.4 170 188-363 22-200 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.9E-19 137.4 15.7 148 187-363 14-164 (220)
111 4ezg_A Putative uncharacterize 99.6 2.3E-15 8E-20 140.2 10.0 108 49-157 45-153 (197)
112 1dce_A Protein (RAB geranylger 99.6 1E-17 3.5E-22 181.2 -9.1 202 112-359 345-567 (567)
113 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.4E-20 148.8 6.4 172 68-271 17-188 (263)
114 1dce_A Protein (RAB geranylger 99.6 4.7E-17 1.6E-21 176.1 -5.0 176 184-369 349-549 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 6.9E-14 2.3E-18 132.6 16.1 130 185-342 33-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.6 6.6E-14 2.3E-18 132.7 15.9 128 94-243 33-164 (220)
117 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 131.4 17.2 99 50-149 21-121 (229)
118 2xot_A Amphoterin-induced prot 99.5 4.8E-14 1.6E-18 144.3 14.7 104 51-156 21-127 (361)
119 2ell_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 128.9 8.9 127 207-363 24-158 (168)
120 2ell_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 126.9 10.5 122 255-383 24-158 (168)
121 2je0_A Acidic leucine-rich nuc 99.4 1.7E-13 5.7E-18 121.4 9.0 125 231-361 17-149 (149)
122 2wfh_A SLIT homolog 2 protein 99.4 2.2E-12 7.6E-17 119.5 14.0 123 50-174 12-137 (193)
123 4b8c_D Glucose-repressible alc 99.4 8E-14 2.7E-18 155.3 4.8 141 86-249 217-359 (727)
124 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.7E-18 152.8 7.1 141 222-369 215-358 (727)
125 2je0_A Acidic leucine-rich nuc 99.4 3.1E-13 1.1E-17 119.6 7.4 127 184-338 17-149 (149)
126 1w8a_A SLIT protein; signaling 99.4 3E-12 1E-16 118.5 13.8 128 186-342 10-139 (192)
127 3sb4_A Hypothetical leucine ri 99.4 1.5E-12 5.1E-17 131.3 12.5 99 254-358 225-327 (329)
128 1w8a_A SLIT protein; signaling 99.4 2.8E-12 9.5E-17 118.7 13.1 125 50-175 10-138 (192)
129 3sb4_A Hypothetical leucine ri 99.4 1.8E-12 6.2E-17 130.7 12.3 213 69-284 100-327 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.7E-17 119.0 8.9 101 256-363 43-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.6E-16 114.9 13.6 106 184-289 31-137 (193)
132 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 112.5 13.1 128 186-342 9-137 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 116.3 7.4 123 48-173 19-150 (176)
134 2o6r_A Variable lymphocyte rec 99.3 4.1E-11 1.4E-15 109.2 13.6 126 49-176 8-137 (177)
135 1ds9_A Outer arm dynein; leuci 99.3 3.3E-14 1.1E-18 132.4 -7.9 126 225-358 42-180 (198)
136 4fs7_A Uncharacterized protein 99.2 4.9E-10 1.7E-14 115.8 20.5 164 205-388 228-393 (394)
137 4fdw_A Leucine rich hypothetic 99.2 1.2E-09 4.1E-14 112.9 20.0 229 49-288 136-380 (401)
138 4fdw_A Leucine rich hypothetic 99.2 3.3E-09 1.1E-13 109.5 23.3 59 302-362 319-380 (401)
139 4fs7_A Uncharacterized protein 99.1 1.9E-09 6.5E-14 111.3 20.0 321 58-414 57-391 (394)
140 1ds9_A Outer arm dynein; leuci 99.1 3.6E-13 1.2E-17 125.4 -8.9 114 245-366 38-154 (198)
141 3g39_A Variable lymphocyte rec 99.1 3.9E-10 1.3E-14 102.0 11.4 100 50-150 11-112 (170)
142 2r9u_A Variable lymphocyte rec 99.1 7.7E-10 2.6E-14 100.4 11.5 99 51-150 15-115 (174)
143 3g39_A Variable lymphocyte rec 99.1 7.2E-10 2.5E-14 100.2 11.2 103 185-289 10-113 (170)
144 2r9u_A Variable lymphocyte rec 99.1 7.9E-10 2.7E-14 100.4 11.2 102 186-289 14-116 (174)
145 3un9_A NLR family member X1; l 98.8 1.7E-10 5.8E-15 118.1 -3.3 153 183-363 71-250 (372)
146 4gt6_A Cell surface protein; l 98.8 6.9E-07 2.4E-11 92.0 23.0 320 8-361 53-387 (394)
147 2ifg_A High affinity nerve gro 98.8 2.5E-08 8.4E-13 101.0 11.4 104 187-291 11-116 (347)
148 3un9_A NLR family member X1; l 98.7 1.6E-09 5.3E-14 110.9 -0.1 62 228-289 180-250 (372)
149 2ifg_A High affinity nerve gro 98.7 6.1E-08 2.1E-12 98.0 10.8 98 75-174 13-114 (347)
150 4gt6_A Cell surface protein; l 98.6 3.8E-06 1.3E-10 86.4 23.1 307 59-390 50-385 (394)
151 4h09_A Hypothetical leucine ri 98.6 1.4E-05 4.8E-10 81.6 26.5 291 49-369 47-348 (379)
152 2ra8_A Uncharacterized protein 98.6 3.2E-08 1.1E-12 100.5 4.8 159 202-363 134-318 (362)
153 4h09_A Hypothetical leucine ri 98.4 3.6E-05 1.2E-09 78.5 24.0 277 68-391 44-341 (379)
154 2ra8_A Uncharacterized protein 98.4 1.9E-07 6.5E-12 94.7 5.8 156 69-243 138-319 (362)
155 1io0_A Tropomodulin; LRR prote 98.1 4.7E-07 1.6E-11 82.7 -0.2 115 225-363 30-162 (185)
156 3e4g_A ATP synthase subunit S, 98.0 2.9E-06 9.8E-11 76.0 4.1 94 62-155 52-154 (176)
157 3e4g_A ATP synthase subunit S, 97.9 6.2E-06 2.1E-10 73.8 4.3 95 84-178 52-154 (176)
158 1io0_A Tropomodulin; LRR prote 97.9 9.3E-07 3.2E-11 80.8 -2.1 115 200-342 29-164 (185)
159 3rw6_A Nuclear RNA export fact 97.6 4.6E-05 1.6E-09 73.3 5.2 78 68-146 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.4 0.0001 3.5E-09 70.9 5.1 58 305-363 169-231 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0017 5.8E-08 59.1 1.2 60 303-362 95-167 (197)
162 3rfe_A Platelet glycoprotein I 95.9 0.012 4.1E-07 49.7 6.1 53 309-363 11-66 (130)
163 3rfe_A Platelet glycoprotein I 95.3 0.025 8.4E-07 47.8 5.8 52 52-104 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.7 0.0042 1.4E-07 56.4 -0.7 62 302-363 66-137 (197)
165 2lz0_A Uncharacterized protein 20.4 1.1E+02 0.0038 23.6 4.2 37 203-240 16-52 (100)
166 2lz0_A Uncharacterized protein 20.4 1.3E+02 0.0045 23.2 4.7 34 89-124 16-51 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-36 Score=330.26 Aligned_cols=346 Identities=20% Similarity=0.202 Sum_probs=248.5
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCC-CCC-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLP-SKN-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~l 85 (566)
.+.+.+|.++++||+|++++ +......|..+..++ +|++|++++|.++.++ ..+ .+++|++|++++|+++.+
T Consensus 47 ~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 47 TIQNTTFSRLINLTFLDLTR-----CQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp EECTTTSTTCTTCSEEECTT-----CCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred cCChhHhccCccceEEECCC-----CccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 45678999999999999998 455667788899986 8999999999998774 455 899999999999999987
Q ss_pred -cccCCCCCCCcEEecCCCCCCC-CCCCCCCCCCccEEEeeCCCCccccchhhhhcccCc--EEecCCCCCCCccCCcCC
Q 037314 86 -WNGVQNLAALKRLNLSYSKQLS-RIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLV--FLNLGHCISLKSLPTGIN 161 (566)
Q Consensus 86 -~~~~~~l~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~--~L~L~~c~~l~~lp~~~~ 161 (566)
+..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++++|......|..+.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 6778999999999999999776 457777799999999999988877788899999999 899998654433343334
Q ss_pred CCC----------------------------------------------------ccEEEecCCCCCCcCCc---ccCCC
Q 037314 162 LDS----------------------------------------------------LKVLYLGGCSNLKRFPE---ISCNI 186 (566)
Q Consensus 162 l~~----------------------------------------------------L~~L~L~~~~~l~~~~~---~~~~L 186 (566)
..+ |+.|++++|......+. ...+|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 444 44455555433222222 23478
Q ss_pred CEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccc-ccCCCCccceeccCCc
Q 037314 187 EHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPE-EIGNLESLEVMLANET 265 (566)
Q Consensus 187 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~-~l~~l~~L~~L~l~~n 265 (566)
++|++++|.+.++|..+..+++|++|++++|...+..|..+.++++|++|++++|.....+|. .+..+++|++|++++|
T Consensus 281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp SEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 888999999999998888899999999998887777777888888888888888877766554 4778888888888888
Q ss_pred ccccc---CcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-C-CCCCCCCCCCEEeccCCC
Q 037314 266 AISQV---PPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-P-ESLGRSPSLNYLNLAEND 340 (566)
Q Consensus 266 ~l~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p-~~l~~l~~L~~L~Ls~n~ 340 (566)
.+..+ +..+..+++|++|++++|..... ....+..+++|++|++++|.+... + ..+..+++|++|++++|.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSL----KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEE----CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcC----CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 87755 55677788888888887763211 011134444555555555554442 1 224444555555555554
Q ss_pred Ceec-CcchhcCCCCcEecccccc
Q 037314 341 FEKI-PSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 341 l~~l-p~~i~~l~~L~~L~L~~c~ 363 (566)
+... |..+..+++|++|++++|+
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cCCcCHHHHhCCCCCCEEECCCCC
Confidence 4432 3334444555555555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-36 Score=343.23 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=176.9
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCC-CCCCCC-C-CCCeEEEEcCCCCCc-ccc
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLK-SLPSKN-I-PEHLVSLEMPHSNIE-QLW 86 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~-~~~L~~L~L~~~~i~-~l~ 86 (566)
+.+|.++++|+.|+++++ .....+|.. .++ +|++|++++|.++ .+|..+ . +++|++|++++|+++ .+|
T Consensus 240 ~~~l~~l~~L~~L~Ls~n-----~l~~~~~~~--~l~-~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSN-----QFVGPIPPL--PLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp HHHTTTCSSCCEEECCSS-----CCEESCCCC--CCT-TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cHHHhcCCCCCEEECCCC-----cccCccCcc--ccC-CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 678999999999999983 444445543 454 8999999999887 778766 3 489999999999988 667
Q ss_pred ccCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEEeeCCCCccccchhhhhcc-cCcEEecCCCCCCCccCCcC-C-
Q 037314 87 NGVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLDLVGCASLIETHSSIQHLN-KLVFLNLGHCISLKSLPTGI-N- 161 (566)
Q Consensus 87 ~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~lp~~~-~- 161 (566)
..+..+++|++|++++|.+.+.+|. +..+++|++|++++|...+.+|..+..++ +|++|++++|.....+|..+ .
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 8888999999999999987767763 78889999999999887778888888876 78888887765444444444 2
Q ss_pred -CCCccEEEecCCCCCCcCCccc---CCCCEEecCCCCCc-ccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEE
Q 037314 162 -LDSLKVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIE-ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNL 236 (566)
Q Consensus 162 -l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 236 (566)
+++|++|++++|.....+|..+ .+|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 5556666666655444444332 24555555555554 344445555555555555555544555555555555555
Q ss_pred eccCCcCCcccccccCCCCccceeccCCcccc-ccCcccccCCCCCEEEccCCC
Q 037314 237 YLSGCLKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIACLNRVESLSFDRCK 289 (566)
Q Consensus 237 ~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~~~ 289 (566)
++++|...+.+|..+.++++|+.|++++|.+. .+|..++.+++|++|++++|.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 55555444444555555555555555555544 344444445555555555444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-35 Score=328.46 Aligned_cols=343 Identities=14% Similarity=0.142 Sum_probs=288.1
Q ss_pred CCCCCCCC-CCCCeEEEEcCCCCCcc------------------ccccCC--CCCCCcEEecCCCCCCCCCCC-CCCCCC
Q 037314 60 LKSLPSKN-IPEHLVSLEMPHSNIEQ------------------LWNGVQ--NLAALKRLNLSYSKQLSRIPD-ISLAFN 117 (566)
Q Consensus 60 l~~lp~~~-~~~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l~~ 117 (566)
++.+|..+ ++++|++|++++|+++. +|..+. ++++|++|+|++|.+.+.+|+ ++++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 33477666 88999999999999998 999998 999999999999998888886 899999
Q ss_pred ccEEEeeCCC-Ccc-ccchhhhhc------ccCcEEecCCCCCCCccCC--cC-CCCCccEEEecCCCCCCcCCccc---
Q 037314 118 IERLDLVGCA-SLI-ETHSSIQHL------NKLVFLNLGHCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFPEIS--- 183 (566)
Q Consensus 118 L~~L~L~~c~-~~~-~~~~~~~~l------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~~~~~--- 183 (566)
|++|++++|. ..+ .+|..++.+ ++|++|++++| .++.+|. .+ .+++|++|++++|...+.+| .+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 666 789988887 99999999995 5569998 55 89999999999987665777 33
Q ss_pred CCCCEEecCCCCCcccCccccCCCC-CcEEeccCCCCcccccccccCCC--CCcEEeccCCcCCcccccccC-------C
Q 037314 184 CNIEHLDLKETAIEELPSSIGNLSR-LVHLDLTNCSRLKSVSSSLCNLK--SLVNLYLSGCLKLEKLPEEIG-------N 253 (566)
Q Consensus 184 ~~L~~L~L~~~~i~~lp~~~~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~ls~~~~l~~~p~~l~-------~ 253 (566)
.+|++|++++|.+..+|..+..+++ |++|++++|... .+|..+..++ +|++|++++|...+..|..+. .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 4788999999999999999999999 999999998866 8888777655 899999999999998888888 8
Q ss_pred CCccceeccCCccccccCcccc-cCCCCCEEEccCCCCCCCCCCCCccc----ccCCCCCcEEecccCCCcccCCCCC--
Q 037314 254 LESLEVMLANETAISQVPPSIA-CLNRVESLSFDRCKGRPPLMSLKLPI----LFQLQNLEYLSLVDCGITELPESLG-- 326 (566)
Q Consensus 254 l~~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~----~~~l~~L~~L~L~~~~l~~lp~~l~-- 326 (566)
+++|+.|++++|.++.+|..+. .+++|+.|++++|... .++...+.. +.++++|++|++++|+++.+|..+.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 8899999999999999988654 5899999999999865 222211111 2234499999999999999998887
Q ss_pred CCCCCCEEeccCCCCeecCcchhcCCCCcEecccc------cccCCcCC----CCCCCCeEeecCCcCcccccCcchhcc
Q 037314 327 RSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRN------CKRLQSLP----ELPCGSTIFARHCTSLETLSSLSTLFT 396 (566)
Q Consensus 327 ~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~ 396 (566)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++ |+..+.+| .++.++.|++.++.- ..++..
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~----- 584 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK----- 584 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-----
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-----
Confidence 99999999999999999999999999999999954 55566666 477789999988764 777643
Q ss_pred cccccceeeEeeCCCCC
Q 037314 397 RSSELWQAFDFCNCFKL 413 (566)
Q Consensus 397 ~~~~~l~~l~~~~C~~L 413 (566)
..+.++.+++.+++-.
T Consensus 585 -~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 585 -ITPNISVLDIKDNPNI 600 (636)
T ss_dssp -CCTTCCEEECCSCTTC
T ss_pred -HhCcCCEEECcCCCCc
Confidence 1267888998887544
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-35 Score=326.39 Aligned_cols=428 Identities=18% Similarity=0.193 Sum_probs=273.2
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCC-CCCC-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~l 85 (566)
.+.+.+|+++++||.|++++ +......|..+..++ +||+|++++|.++.+ |..| .+++|++|++++|+++.+
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp EECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred EeChhhccCCccCcEEeCCC-----CcccccCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence 45566888999999999987 345555677788875 899999999998888 5555 888999999999999877
Q ss_pred c-ccCCCCCCCcEEecCCCCCCC-CCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCc----EEecCCCCCCCccCC
Q 037314 86 W-NGVQNLAALKRLNLSYSKQLS-RIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLV----FLNLGHCISLKSLPT 158 (566)
Q Consensus 86 ~-~~~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~----~L~L~~c~~l~~lp~ 158 (566)
+ ..+..+++|++|++++|.+.. .+|. ++++++|++|++++|...+..+..++.+++|+ +|++++| .++.+|.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~ 198 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQD 198 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECT
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-CcceeCc
Confidence 6 678899999999999998765 4555 88899999999999887777777777777665 7888884 4566665
Q ss_pred cC-CCCCccEEEecCCCCCC----------------------------------------------------------cC
Q 037314 159 GI-NLDSLKVLYLGGCSNLK----------------------------------------------------------RF 179 (566)
Q Consensus 159 ~~-~l~~L~~L~L~~~~~l~----------------------------------------------------------~~ 179 (566)
.. ...+|+.|++++|.... .+
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence 44 55578888888764320 00
Q ss_pred C--cccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccc--------------------cccCCCCCcEEe
Q 037314 180 P--EISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSS--------------------SLCNLKSLVNLY 237 (566)
Q Consensus 180 ~--~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--------------------~l~~l~~L~~L~ 237 (566)
| ....+++.|+++++.+..+| .+..+++|++|++++|.. +.+|. .+..+++|++|+
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 1 11235566666666666665 555566666666666554 44442 233444555555
Q ss_pred ccCCcCCcc--cccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEeccc
Q 037314 238 LSGCLKLEK--LPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVD 315 (566)
Q Consensus 238 ls~~~~l~~--~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~ 315 (566)
+++|...+. .|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|...... ....+..+++|++|++++
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT---EFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTT---TTTTTTTCTTCCEEECTT
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCcc---ChhhhhccccCCEEECcC
Confidence 555443332 245555666666666666666666666666666666666666532210 012356677777777777
Q ss_pred CCCcc-cCCCCCCCCCCCEEeccCCCCee--cCcchhcCCCCcEecccccccCCcCC----CCCCCCeEeecCCcCcccc
Q 037314 316 CGITE-LPESLGRSPSLNYLNLAENDFEK--IPSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGSTIFARHCTSLETL 388 (566)
Q Consensus 316 ~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~~L~~~~c~~L~~l 388 (566)
|.+.. .|..++.+++|++|++++|.++. +|..+..+++|++|++++|+.....| .++.++.|++.++. +..+
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 512 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFL 512 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCc
Confidence 77776 45667777777777777777764 57677777778888877776433333 35556777777763 3333
Q ss_pred cCcchhcccccccceeeEeeCCCCCChhhhhhhHHHHHHHHHHHhhhcccCCCccccCCCCCCCCceeecCCCCCCCccc
Q 037314 389 SSLSTLFTRSSELWQAFDFCNCFKLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFS 468 (566)
Q Consensus 389 ~~~~~~~~~~~~~l~~l~~~~C~~L~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~ 468 (566)
... .....+.++.+++.+|. +. .++.. +.. +. ..-...++.+|||.|+|-. .++.+|+.
T Consensus 513 ~~~---~~~~l~~L~~L~l~~N~-l~-----~~p~~-~~~---l~-------~~L~~l~l~~N~~~c~c~~-~~~~~~l~ 571 (606)
T 3vq2_A 513 DSS---HYNQLYSLSTLDCSFNR-IE-----TSKGI-LQH---FP-------KSLAFFNLTNNSVACICEH-QKFLQWVK 571 (606)
T ss_dssp EGG---GTTTCTTCCEEECTTSC-CC-----CEESC-GGG---SC-------TTCCEEECCSCCCCCSSTT-HHHHTTTT
T ss_pred CHH---HccCCCcCCEEECCCCc-Cc-----ccCHh-Hhh---hc-------ccCcEEEccCCCcccCCcc-HHHHHHHH
Confidence 111 11334556667766553 32 22211 100 00 0112345678999999854 23445654
Q ss_pred c
Q 037314 469 F 469 (566)
Q Consensus 469 ~ 469 (566)
.
T Consensus 572 ~ 572 (606)
T 3vq2_A 572 E 572 (606)
T ss_dssp T
T ss_pred c
Confidence 3
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.7e-36 Score=330.49 Aligned_cols=335 Identities=16% Similarity=0.118 Sum_probs=285.9
Q ss_pred EcCCCccCCCccceEEEeCCccCCC------------------CCCCC---CCCCeEEEEcCCCCCc-cccccCCCCCCC
Q 037314 38 RHSRYLESLFNELRYFYWDGYPLKS------------------LPSKN---IPEHLVSLEMPHSNIE-QLWNGVQNLAAL 95 (566)
Q Consensus 38 ~l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~i~-~l~~~~~~l~~L 95 (566)
.+|..+..++ +|++|++++|.++. +|..+ ++++|++|++++|++. .+|..+.++++|
T Consensus 197 ~ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 3888898986 89999999999998 99876 4999999999999976 789999999999
Q ss_pred cEEecCCCC-CCC-CCCC-CCCC------CCccEEEeeCCCCccccch--hhhhcccCcEEecCCCCCCCccCCcC-CCC
Q 037314 96 KRLNLSYSK-QLS-RIPD-ISLA------FNIERLDLVGCASLIETHS--SIQHLNKLVFLNLGHCISLKSLPTGI-NLD 163 (566)
Q Consensus 96 ~~L~Ls~~~-~l~-~~p~-l~~l------~~L~~L~L~~c~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~ 163 (566)
++|++++|. +.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|.....+| .+ .++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 555 5664 5554 99999999999877 8888 89999999999999965444999 55 899
Q ss_pred CccEEEecCCCCCCcCCccc---CC-CCEEecCCCCCcccCccccCCC--CCcEEeccCCCCccccccccc-------CC
Q 037314 164 SLKVLYLGGCSNLKRFPEIS---CN-IEHLDLKETAIEELPSSIGNLS--RLVHLDLTNCSRLKSVSSSLC-------NL 230 (566)
Q Consensus 164 ~L~~L~L~~~~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~~~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l 230 (566)
+|++|++++|... .+|..+ .+ |++|++++|.+..+|..+..++ +|++|++++|...+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 9999999998644 666544 36 9999999999999999887765 999999999999998888888 88
Q ss_pred CCCcEEeccCCcCCccccc-ccCCCCccceeccCCccccccCcccccC--------CCCCEEEccCCCCCCCCCCCCccc
Q 037314 231 KSLVNLYLSGCLKLEKLPE-EIGNLESLEVMLANETAISQVPPSIACL--------NRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 231 ~~L~~L~ls~~~~l~~~p~-~l~~l~~L~~L~l~~n~l~~l~~~l~~l--------~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
++|++|++++|... .+|. .+..+++|+.|++++|.++.+|..+... ++|+.|++++|.... +|.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------lp~ 505 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK------LSD 505 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB------CCG
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc------cCh
Confidence 89999999998776 5554 4567999999999999999988754432 299999999998552 444
Q ss_pred -cc--CCCCCcEEecccCCCcccCCCCCCCCCCCEEecc------CCCC-eecCcchhcCCCCcEecccccccCCcCCC-
Q 037314 302 -LF--QLQNLEYLSLVDCGITELPESLGRSPSLNYLNLA------ENDF-EKIPSSIKQLSKLLFLTLRNCKRLQSLPE- 370 (566)
Q Consensus 302 -~~--~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls------~n~l-~~lp~~i~~l~~L~~L~L~~c~~L~~lp~- 370 (566)
+. .+++|+.|++++|+++.+|..+..+++|+.|+|+ +|.+ ..+|..+..+++|++|+|++|+. +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 54 8999999999999999999999999999999995 4554 48899999999999999999985 88885
Q ss_pred -CCCCCeEeecCCcC
Q 037314 371 -LPCGSTIFARHCTS 384 (566)
Q Consensus 371 -lp~~~~L~~~~c~~ 384 (566)
.+.++.|++.+++-
T Consensus 585 ~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 585 ITPNISVLDIKDNPN 599 (636)
T ss_dssp CCTTCCEEECCSCTT
T ss_pred HhCcCCEEECcCCCC
Confidence 34459999998853
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-35 Score=335.52 Aligned_cols=289 Identities=21% Similarity=0.265 Sum_probs=177.9
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCc-cccccCCCC-CCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNGVQNL-AALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVG 125 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~~~~l-~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 125 (566)
+|++|++++|.+....+...+++|++|++++|+++ .+|..+..+ ++|++|++++|.+...+|. ++.+++|++|++++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 44444444444432222224444555555555444 444444332 5555555555554444443 45555555555555
Q ss_pred CCCccccchh-hhhcccCcEEecCCCCCCCccCCcC-CCC-CccEEEecCCCCCCcCCcc-----cCCCCEEecCCCCCc
Q 037314 126 CASLIETHSS-IQHLNKLVFLNLGHCISLKSLPTGI-NLD-SLKVLYLGGCSNLKRFPEI-----SCNIEHLDLKETAIE 197 (566)
Q Consensus 126 c~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~lp~~~-~l~-~L~~L~L~~~~~l~~~~~~-----~~~L~~L~L~~~~i~ 197 (566)
|...+.+|.. ++.+++|++|++++|.....+|..+ .++ +|++|++++|.....+|.. ..+|++|++++|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 5544444433 5555555555555543333444444 333 5666666655444333332 235777777777776
Q ss_pred -ccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc-ccCcccc
Q 037314 198 -ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIA 275 (566)
Q Consensus 198 -~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~ 275 (566)
.+|..++.+++|++|++++|...+.+|..+.++++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..+.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 56777888888888888888777778888888888888888888887788888888888888888888887 6677888
Q ss_pred cCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccCCCCe
Q 037314 276 CLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 276 ~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 342 (566)
.+++|+.|++++|..... +|. +..+++|++|++++|.+.. +|..++.+++|+.|+|++|.+.
T Consensus 488 ~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGE-----IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCCCCEEEccCCccCCc-----CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 888888888888875533 333 5566666666666666664 5556666666666666666544
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.6e-34 Score=316.67 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=106.3
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l 85 (566)
.+.+.+|.++++|+.|++++ +......|..+..++ +|++|++++|.++.+|.. | .+++|++|++++|+++.+
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGF-----NTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCS-----SCCCCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CcCHHHHhCCCcCcEEECCC-----CccCccCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 35567899999999999987 344444566677775 899999999999998874 4 888999999999999887
Q ss_pred c-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhh--hcccCcEEecCCC
Q 037314 86 W-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQ--HLNKLVFLNLGHC 150 (566)
Q Consensus 86 ~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~--~l~~L~~L~L~~c 150 (566)
+ ..+..+++|++|++++|.+....|. ++.+++|++|++++|...+..+..+. .+++|+.|++++|
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 6 5688899999999999987766655 77888899999888876655555443 3467777777765
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=321.12 Aligned_cols=423 Identities=20% Similarity=0.240 Sum_probs=283.4
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l 85 (566)
.+.+.+|.++++||.|++++ +......+..+..++ +||+|++++|.++.+|. .| .+++|++|++++|+++.+
T Consensus 42 ~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 42 HLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp EECTTTTTTCSSCCEEECTT-----CCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred ccChhHhhCCCCceEEECCC-----CcCCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence 34566888889999999987 334444556677775 89999999998888774 44 788999999999988887
Q ss_pred cc-cCCCCCCCcEEecCCCCCCC-CCCC-CCCCCCccEEEeeCCCCccccchhhhhcccC----cEEecCCCCCCCccC-
Q 037314 86 WN-GVQNLAALKRLNLSYSKQLS-RIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKL----VFLNLGHCISLKSLP- 157 (566)
Q Consensus 86 ~~-~~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L----~~L~L~~c~~l~~lp- 157 (566)
+. .+..+++|++|++++|.+.. .+|+ ++++++|++|++++|......+..++.+++| +.|++++|. ++.++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~ 194 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP 194 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECT
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCH
Confidence 65 57888999999999887665 3454 8888899999999888777777778888888 788888854 44443
Q ss_pred CcCCCCCccEEEecCCCCC----------------------------------------------------------CcC
Q 037314 158 TGINLDSLKVLYLGGCSNL----------------------------------------------------------KRF 179 (566)
Q Consensus 158 ~~~~l~~L~~L~L~~~~~l----------------------------------------------------------~~~ 179 (566)
..+...+|+.|++++|... ...
T Consensus 195 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 274 (570)
T 2z63_A 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274 (570)
T ss_dssp TTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS
T ss_pred HHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc
Confidence 3335557888887775210 111
Q ss_pred Cc---ccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCc
Q 037314 180 PE---ISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLES 256 (566)
Q Consensus 180 ~~---~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~ 256 (566)
+. ...+|++|+++++.+.++|..+..+ +|++|++++|... .+|. ..+++|++|++++|......+. ..+++
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 348 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPS 348 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTT
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCC
Confidence 11 2357888899999888899888888 8999999887655 5554 4677788888877776555544 66777
Q ss_pred cceeccCCcccccc---CcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC--CCCCCCCCC
Q 037314 257 LEVMLANETAISQV---PPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP--ESLGRSPSL 331 (566)
Q Consensus 257 L~~L~l~~n~l~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L 331 (566)
|+.|++++|.++.+ +..+..+++|++|++++|..... .+.+..+++|++|++++|.+...+ ..+..+++|
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 88888877777754 45667777788888877763221 112666777777777777777643 356777777
Q ss_pred CEEeccCCCCee-cCcchhcCCCCcEecccccccC-CcCC----CCCCCCeEeecCCcCcccccCcchhcccccccceee
Q 037314 332 NYLNLAENDFEK-IPSSIKQLSKLLFLTLRNCKRL-QSLP----ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAF 405 (566)
Q Consensus 332 ~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~L-~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l 405 (566)
++|++++|.+.. .|..+..+++|++|++++|+.. ..+| .++.++.|++.+|. ++.+... .....+.++.+
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L 499 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVL 499 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEE
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChh---hhhcccCCCEE
Confidence 777777777764 4556677777777777777643 2343 45666777777763 3333111 01234556667
Q ss_pred EeeCCCCCChhhhhhhHHHHHHHHHHHhhhcccCCCccccCCCCCCCCceeecCCCCCCCcccc
Q 037314 406 DFCNCFKLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFSF 469 (566)
Q Consensus 406 ~~~~C~~L~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~ 469 (566)
++.+| ++.. +++..+..+..+ ...++.+|||.|.|-....++.|+..
T Consensus 500 ~l~~n-~l~~-----~~~~~~~~l~~L-----------~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 500 NMASN-QLKS-----VPDGIFDRLTSL-----------QKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp ECCSS-CCSC-----CCTTTTTTCTTC-----------CEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred eCCCC-cCCC-----CCHHHhhcccCC-----------cEEEecCCcccCCCcchHHHHHHHHh
Confidence 76665 2222 211111111111 22345678888877443334567654
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-34 Score=320.15 Aligned_cols=341 Identities=13% Similarity=0.131 Sum_probs=264.6
Q ss_pred CCCCCC-CCCCeEEEEcCCCCCcc------------------ccccCC--CCCCCcEEecCCCCCCCCCCC-CCCCCCcc
Q 037314 62 SLPSKN-IPEHLVSLEMPHSNIEQ------------------LWNGVQ--NLAALKRLNLSYSKQLSRIPD-ISLAFNIE 119 (566)
Q Consensus 62 ~lp~~~-~~~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~ 119 (566)
.+|..+ .+++|++|+|++|+++. +|..+. .+++|++|+|++|.+...+|. ++.+++|+
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 377666 78899999999999887 888877 899999999999988888875 88899999
Q ss_pred EEEeeCCC-Ccc-ccchhhhhcc-------cCcEEecCCCCCCCccCC--cC-CCCCccEEEecCCCCCCcCCcc--cCC
Q 037314 120 RLDLVGCA-SLI-ETHSSIQHLN-------KLVFLNLGHCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFPEI--SCN 185 (566)
Q Consensus 120 ~L~L~~c~-~~~-~~~~~~~~l~-------~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~~~~--~~~ 185 (566)
+|+|++|. ..+ .+|..++.++ +|++|++++| .+..+|. .+ .+++|++|++++|... .+|.. ..+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCc
Confidence 99999987 666 6888787776 8999999885 4558888 55 8889999999988755 77722 236
Q ss_pred CCEEecCCCCCcccCccccCCCC-CcEEeccCCCCcccccccccCCCC--CcEEeccCCcCCcccccc---cC--CCCcc
Q 037314 186 IEHLDLKETAIEELPSSIGNLSR-LVHLDLTNCSRLKSVSSSLCNLKS--LVNLYLSGCLKLEKLPEE---IG--NLESL 257 (566)
Q Consensus 186 L~~L~L~~~~i~~lp~~~~~l~~-L~~L~L~~~~~l~~lp~~l~~l~~--L~~L~ls~~~~l~~~p~~---l~--~l~~L 257 (566)
|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|...+.+|.. +. .+++|
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 77889999999999988888888 999999988755 77877776654 999999998877665532 22 34588
Q ss_pred ceeccCCccccccCcccc-cCCCCCEEEccCCCCCCCCCCCCcc----cccCCCCCcEEecccCCCcccCCCCC--CCCC
Q 037314 258 EVMLANETAISQVPPSIA-CLNRVESLSFDRCKGRPPLMSLKLP----ILFQLQNLEYLSLVDCGITELPESLG--RSPS 330 (566)
Q Consensus 258 ~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~----~~~~l~~L~~L~L~~~~l~~lp~~l~--~l~~ 330 (566)
+.|++++|.+..+|..+. .+++|+.|++++|... .++...+. ...++++|+.|+|++|+++.+|..+. .+++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 999999999998887654 7889999999988754 22211111 12334589999999999998888876 8899
Q ss_pred CCEEeccCCCCeecCcchhcCCCCcEecccc------cccCCcCC----CCCCCCeEeecCCcCcccccCcchhcccccc
Q 037314 331 LNYLNLAENDFEKIPSSIKQLSKLLFLTLRN------CKRLQSLP----ELPCGSTIFARHCTSLETLSSLSTLFTRSSE 400 (566)
Q Consensus 331 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~ 400 (566)
|+.|+|++|.++.+|..+..+++|+.|+|++ |...+.+| .++.++.|++.+|.- ..++.. ..+
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~------l~~ 827 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK------LTP 827 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC------CCS
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh------hcC
Confidence 9999999999988998888999999999976 44455666 367778888888754 777653 124
Q ss_pred cceeeEeeCCCCC
Q 037314 401 LWQAFDFCNCFKL 413 (566)
Q Consensus 401 ~l~~l~~~~C~~L 413 (566)
.++.+++++|+-.
T Consensus 828 ~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 828 QLYILDIADNPNI 840 (876)
T ss_dssp SSCEEECCSCTTC
T ss_pred CCCEEECCCCCCC
Confidence 6888888877643
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.8e-35 Score=316.84 Aligned_cols=414 Identities=16% Similarity=0.225 Sum_probs=248.7
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCcccccc-CCCCCC
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQNLAA 94 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~-~~~l~~ 94 (566)
++|+.|++++ +......|..+..++ +|++|++++|.++.++. .| .+++|++|++++|+++.++.. +..+++
T Consensus 26 ~~L~~L~Ls~-----n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSF-----NKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCS-----SCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcC-----CccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 4677777766 233444455666664 67777777777666653 33 666777777777777665543 666777
Q ss_pred CcEEecCCCCCCC-CCC-CCCCCCCccEEEeeCCCCccccc-hhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEe
Q 037314 95 LKRLNLSYSKQLS-RIP-DISLAFNIERLDLVGCASLIETH-SSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYL 170 (566)
Q Consensus 95 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 170 (566)
|++|++++|.+.. ..| .++.+++|++|++++|...+.++ ..+..+++|++|++++|......|..+ .+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 7777777766543 222 36666777777777766455444 456667777777776654433445444 5566666666
Q ss_pred cCCCCCCcCCc----ccCCCCEEecCCCCCcccC--------------------------------ccccCCCCCcEEec
Q 037314 171 GGCSNLKRFPE----ISCNIEHLDLKETAIEELP--------------------------------SSIGNLSRLVHLDL 214 (566)
Q Consensus 171 ~~~~~l~~~~~----~~~~L~~L~L~~~~i~~lp--------------------------------~~~~~l~~L~~L~L 214 (566)
+++.. ..+|. ...+|++|++++|.+..++ ..+..+++|+.|++
T Consensus 180 ~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 180 HLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp ECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred ccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 55442 22222 1345555555555555432 11223333444444
Q ss_pred cCCCCccc-----------------------------------ccccccCCCCCcEEeccCCcCCccccccc-CCCCccc
Q 037314 215 TNCSRLKS-----------------------------------VSSSLCNLKSLVNLYLSGCLKLEKLPEEI-GNLESLE 258 (566)
Q Consensus 215 ~~~~~l~~-----------------------------------lp~~l~~l~~L~~L~ls~~~~l~~~p~~l-~~l~~L~ 258 (566)
++|...+. ++..+...++|++|++++|. ++.+|..+ ..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCcccc
Confidence 43322110 00001123456666666654 34566554 4678888
Q ss_pred eeccCCccccc-cC---cccccCCCCCEEEccCCCCCCCCCCCCcc----cccCCCCCcEEecccCCCcccCCCCCCCCC
Q 037314 259 VMLANETAISQ-VP---PSIACLNRVESLSFDRCKGRPPLMSLKLP----ILFQLQNLEYLSLVDCGITELPESLGRSPS 330 (566)
Q Consensus 259 ~L~l~~n~l~~-l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~l~----~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~ 330 (566)
.|++++|.+.. +| ..++.+++|++|++++|.... ++ .+..+++|++|++++|+++.+|..++.+++
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC------HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccc------cccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 88888888774 32 236677888888888886432 22 267788888888888888888888888888
Q ss_pred CCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCCCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCC
Q 037314 331 LNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNC 410 (566)
Q Consensus 331 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C 410 (566)
|++|++++|.++.+|..+ .++|++|++++|+.-..++.+|.++.|++.++ .++.++.. ...+.++.+++.++
T Consensus 412 L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~-----~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA-----SLFPVLLVMKISRN 483 (549)
T ss_dssp CCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG-----GGCTTCCEEECCSS
T ss_pred ccEEECCCCCcccccchh--cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc-----ccCccCCEEecCCC
Confidence 888888888888877654 36888888888864443446777788888887 56666643 33456777887665
Q ss_pred CCCChhhhhhhHHHHHHHHHHHhhhcccCCCccccCCCCCCCCceeecCCCCCCCccccC
Q 037314 411 FKLNRNEVGEIVEGALKKIQIMATWWKQQDPITLYGDVPNSPWGCVCYPGSEIPEWFSFQ 470 (566)
Q Consensus 411 ~~L~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~ 470 (566)
++. .+++..+..+..+ ...++.+|||.|.|--...+..|...+
T Consensus 484 -~l~-----~~~~~~~~~l~~L-----------~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 484 -QLK-----SVPDGIFDRLTSL-----------QKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp -CCC-----CCCTTGGGGCTTC-----------CEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred -ccC-----CcCHHHHhcCccc-----------CEEEecCCCccCCCccHHHHHHHHHhc
Confidence 232 2222222211111 234567899999884333455676543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-33 Score=308.68 Aligned_cols=386 Identities=19% Similarity=0.184 Sum_probs=301.5
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCc--
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIE-- 83 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~-- 83 (566)
.+.+.+|.++++||+|++++ +......|+.+..++ +|++|++++|.++.++. .+ .+++|++|++++|+++
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~-----n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 143 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143 (606)
T ss_dssp EECTTTTTTCTTCCEEECTT-----CCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCHHHhhchhhcCEeECCC-----CcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce
Confidence 45677899999999999998 344455588899986 89999999999998883 44 8999999999999998
Q ss_pred cccccCCCCCCCcEEecCCCCCCCCCCC-CC---------------------------CCCCccEEEeeCCCCcc-----
Q 037314 84 QLWNGVQNLAALKRLNLSYSKQLSRIPD-IS---------------------------LAFNIERLDLVGCASLI----- 130 (566)
Q Consensus 84 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~---------------------------~l~~L~~L~L~~c~~~~----- 130 (566)
.+|..+.++++|++|++++|.+....|. ++ ...+|++|++++|...+
T Consensus 144 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHH
T ss_pred echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHH
Confidence 4789999999999999999986554332 22 22267777777775421
Q ss_pred -----------------------------------------------------ccchhhhhcccCcEEecCCCCCCCccC
Q 037314 131 -----------------------------------------------------ETHSSIQHLNKLVFLNLGHCISLKSLP 157 (566)
Q Consensus 131 -----------------------------------------------------~~~~~~~~l~~L~~L~L~~c~~l~~lp 157 (566)
.++. +..+++|+.|++++ +.++.+|
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~~~l~ 301 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG-VSIKYLE 301 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES-CCCCCCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecC-ccchhhh
Confidence 1122 56678889999988 4567888
Q ss_pred CcCCCCCccEEEecCCCCCCcCCcc-cCCCCEEecCCCCCc-ccCccccCCCCCcEEeccCCCCccc--ccccccCCCCC
Q 037314 158 TGINLDSLKVLYLGGCSNLKRFPEI-SCNIEHLDLKETAIE-ELPSSIGNLSRLVHLDLTNCSRLKS--VSSSLCNLKSL 233 (566)
Q Consensus 158 ~~~~l~~L~~L~L~~~~~l~~~~~~-~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L 233 (566)
....+++|++|++++|.. +.+|.. ..+|++|++++|... .+ .+..+++|++|++++|...+. .|..+..+++|
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 434899999999999887 777753 458999999998443 33 567899999999999876554 37788899999
Q ss_pred cEEeccCCcCCcccccccCCCCccceeccCCccccccCc--ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEE
Q 037314 234 VNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP--SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYL 311 (566)
Q Consensus 234 ~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L 311 (566)
++|++++|.. ..+|..+..+++|+.|++++|.+..++. .+..+++|++|++++|..... ....+..+++|++|
T Consensus 379 ~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 379 RHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTL 453 (606)
T ss_dssp CEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEE
T ss_pred cEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc----chhhhcCCCCCCEE
Confidence 9999999874 4567888999999999999999987654 788899999999999985432 11237788999999
Q ss_pred ecccCCCcc--cCCCCCCCCCCCEEeccCCCCeec-CcchhcCCCCcEecccccccCCcCC----CCCCCCeEeecCCcC
Q 037314 312 SLVDCGITE--LPESLGRSPSLNYLNLAENDFEKI-PSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGSTIFARHCTS 384 (566)
Q Consensus 312 ~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~~L~~~~c~~ 384 (566)
++++|.+.+ +|..++.+++|++|+|++|.++.+ |..+..+++|++|++++|+.....| .++.++.|++.++.
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR- 532 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-
Confidence 999999987 688899999999999999998866 5678999999999999997544434 46777999999885
Q ss_pred cccccCcchhccccc-ccceeeEeeCCCCCC
Q 037314 385 LETLSSLSTLFTRSS-ELWQAFDFCNCFKLN 414 (566)
Q Consensus 385 L~~l~~~~~~~~~~~-~~l~~l~~~~C~~L~ 414 (566)
++.++.. . ... ..++.+++.+++-..
T Consensus 533 l~~~p~~---~-~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 533 IETSKGI---L-QHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCCEESC---G-GGSCTTCCEEECCSCCCCC
T ss_pred CcccCHh---H-hhhcccCcEEEccCCCccc
Confidence 7777653 1 223 347888887765543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=320.72 Aligned_cols=389 Identities=19% Similarity=0.213 Sum_probs=266.2
Q ss_pred cCHHHHhcCcCCcEEEEeecCCCCccceEEc-CCCccCCCccceEEEeCCccCCCC-CCCC-CCCCeEEEEcCCCCCcc-
Q 037314 9 LNPNTFTKMHRLRFFKFYNIFAGVNKYKVRH-SRYLESLFNELRYFYWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQ- 84 (566)
Q Consensus 9 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~- 84 (566)
+.+.+|.++++||+|+++++ .....+ |+.+..++ +|++|++++|.++.+ |..| .+++|++|+|++|++..
T Consensus 39 i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 39 VTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp ECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred cChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 45567888888888888873 223344 66777775 788888888888876 4455 78888888888888875
Q ss_pred cccc--CCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeCCCCccccchhhhhc--ccCcEEecCCCCCCCccCC
Q 037314 85 LWNG--VQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVGCASLIETHSSIQHL--NKLVFLNLGHCISLKSLPT 158 (566)
Q Consensus 85 l~~~--~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~lp~ 158 (566)
++.. +..+++|++|+|++|.+....+ .|+++++|++|+|++|......+..+..+ ++|+.|++++|......|.
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 4443 7888888888888887766544 37888888888888887777777777776 7788888887655555554
Q ss_pred cC-CCC------CccEEEecCCCCCCcCCcc-----------------------------------------cCCCCEEe
Q 037314 159 GI-NLD------SLKVLYLGGCSNLKRFPEI-----------------------------------------SCNIEHLD 190 (566)
Q Consensus 159 ~~-~l~------~L~~L~L~~~~~l~~~~~~-----------------------------------------~~~L~~L~ 190 (566)
.+ .+. +|++|++++|......+.. ..+++.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 33 333 3888998887433222110 14688889
Q ss_pred cCCCCCccc-CccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccc
Q 037314 191 LKETAIEEL-PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQ 269 (566)
Q Consensus 191 L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~ 269 (566)
+++|.+..+ |..+..+++|+.|++++|...+..|..+.++++|++|++++|...+..|..+..+++|+.|++++|.+..
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 999888876 4568889999999999988888778888899999999999988777778888999999999999999887
Q ss_pred cCc-ccccCCCCCEEEccCCCCCCCCC-----C--------CCcc-----------------------cccCCCCCcEEe
Q 037314 270 VPP-SIACLNRVESLSFDRCKGRPPLM-----S--------LKLP-----------------------ILFQLQNLEYLS 312 (566)
Q Consensus 270 l~~-~l~~l~~L~~L~l~~~~~~~~~~-----~--------~~l~-----------------------~~~~l~~L~~L~ 312 (566)
++. .+..+++|+.|++++|....-.. . ..+| .+..+++|+.|+
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 765 57788899999988887432100 0 0000 022456666666
Q ss_pred cccCCCcccCC--CCCCCCCCCEEeccCCCCeec------CcchhcCCCCcEecccccccCCcCC-----CCCCCCeEee
Q 037314 313 LVDCGITELPE--SLGRSPSLNYLNLAENDFEKI------PSSIKQLSKLLFLTLRNCKRLQSLP-----ELPCGSTIFA 379 (566)
Q Consensus 313 L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~l------p~~i~~l~~L~~L~L~~c~~L~~lp-----~lp~~~~L~~ 379 (566)
+++|+++.++. .+..+++|+.|+|++|.++.+ +..+..+++|+.|+|++|. ++.+| .++.++.|++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeEC
Confidence 66666665432 244556666666666665422 2345667777777777775 33333 3455577777
Q ss_pred cCCcCcccccCcchhcccccccceeeEeeCC
Q 037314 380 RHCTSLETLSSLSTLFTRSSELWQAFDFCNC 410 (566)
Q Consensus 380 ~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C 410 (566)
.++ .++.++.. ...+.++.+++.++
T Consensus 512 s~N-~l~~l~~~-----~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 512 NSN-RLTVLSHN-----DLPANLEILDISRN 536 (844)
T ss_dssp ESC-CCSSCCCC-----CCCSCCCEEEEEEE
T ss_pred CCC-CCCccChh-----hhhccccEEECCCC
Confidence 665 45555432 11245566665543
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-34 Score=321.79 Aligned_cols=334 Identities=16% Similarity=0.146 Sum_probs=281.8
Q ss_pred cCCCccCCCccceEEEeCCccCCC------------------CCCCC---CCCCeEEEEcCCCCCc-cccccCCCCCCCc
Q 037314 39 HSRYLESLFNELRYFYWDGYPLKS------------------LPSKN---IPEHLVSLEMPHSNIE-QLWNGVQNLAALK 96 (566)
Q Consensus 39 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~ 96 (566)
+|..+..++ +|++|++++|.++. +|..+ .+++|++|+|++|++. .+|..+.++++|+
T Consensus 440 IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 888899986 89999999999998 99876 6999999999999865 7899999999999
Q ss_pred EEecCCCC-CCC-CCCC--------CCCCCCccEEEeeCCCCccccch--hhhhcccCcEEecCCCCCCCccCCcCCCCC
Q 037314 97 RLNLSYSK-QLS-RIPD--------ISLAFNIERLDLVGCASLIETHS--SIQHLNKLVFLNLGHCISLKSLPTGINLDS 164 (566)
Q Consensus 97 ~L~Ls~~~-~l~-~~p~--------l~~l~~L~~L~L~~c~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~ 164 (566)
.|+|++|. +.. .+|. +..+++|++|+|++|... .+|. .++.+++|+.|++++| .++.+|....+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCCc
Confidence 99999998 554 4553 345569999999999877 8888 8999999999999995 4669994338999
Q ss_pred ccEEEecCCCCCCcCCccc---CC-CCEEecCCCCCcccCccccCCCC--CcEEeccCCCCcccccc---ccc--CCCCC
Q 037314 165 LKVLYLGGCSNLKRFPEIS---CN-IEHLDLKETAIEELPSSIGNLSR--LVHLDLTNCSRLKSVSS---SLC--NLKSL 233 (566)
Q Consensus 165 L~~L~L~~~~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~~~~l~~--L~~L~L~~~~~l~~lp~---~l~--~l~~L 233 (566)
|+.|++++|... .+|..+ .+ |++|++++|.+..+|..+..++. |+.|++++|...+.+|. .+. .+++|
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999998755 777544 36 99999999999999998887765 99999999988776653 222 34589
Q ss_pred cEEeccCCcCCccccccc-CCCCccceeccCCccccccCcccccC--------CCCCEEEccCCCCCCCCCCCCccc-cc
Q 037314 234 VNLYLSGCLKLEKLPEEI-GNLESLEVMLANETAISQVPPSIACL--------NRVESLSFDRCKGRPPLMSLKLPI-LF 303 (566)
Q Consensus 234 ~~L~ls~~~~l~~~p~~l-~~l~~L~~L~l~~n~l~~l~~~l~~l--------~~L~~L~l~~~~~~~~~~~~~l~~-~~ 303 (566)
+.|++++|... .+|..+ ..+++|+.|++++|.++.+|..+... ++|+.|++++|.... +|. +.
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~------lp~~l~ 748 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS------LSDDFR 748 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC------CCGGGS
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc------chHHhh
Confidence 99999998776 566554 58999999999999999998865543 399999999997552 444 54
Q ss_pred --CCCCCcEEecccCCCcccCCCCCCCCCCCEEeccC------CCC-eecCcchhcCCCCcEecccccccCCcCCC-C-C
Q 037314 304 --QLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAE------NDF-EKIPSSIKQLSKLLFLTLRNCKRLQSLPE-L-P 372 (566)
Q Consensus 304 --~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~------n~l-~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l-p 372 (566)
.+++|+.|+|++|.+..+|..+..+++|+.|+|++ |.+ ..+|..+..+++|+.|+|++|+. +.||. + +
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~ 827 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP 827 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS
T ss_pred hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC
Confidence 89999999999999999999999999999999987 554 47899999999999999999985 88985 3 4
Q ss_pred CCCeEeecCCcC
Q 037314 373 CGSTIFARHCTS 384 (566)
Q Consensus 373 ~~~~L~~~~c~~ 384 (566)
.++.|++.+++-
T Consensus 828 ~L~~LdLs~N~l 839 (876)
T 4ecn_A 828 QLYILDIADNPN 839 (876)
T ss_dssp SSCEEECCSCTT
T ss_pred CCCEEECCCCCC
Confidence 449999999863
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-32 Score=301.80 Aligned_cols=409 Identities=18% Similarity=0.155 Sum_probs=298.4
Q ss_pred eecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCC-CCC-CCCCeEEEEcCCCCCcc
Q 037314 7 VCLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLP-SKN-IPEHLVSLEMPHSNIEQ 84 (566)
Q Consensus 7 ~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~ 84 (566)
..+.+++|.++++|+.|++++ +......|..+..++ +|++|++++|.++.++ ..+ .+++|++|++++|+++.
T Consensus 70 ~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 70 YWIHEDTFQSQHRLDTLVLTA-----NPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTT-----CCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred ceeChhhccCccccCeeeCCC-----CcccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 345678899999999999998 455566677888875 8999999999998874 444 88899999999999987
Q ss_pred cc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCcc--EEEeeCCCCccccchhhhh----------------------
Q 037314 85 LW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIE--RLDLVGCASLIETHSSIQH---------------------- 138 (566)
Q Consensus 85 l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~--~L~L~~c~~~~~~~~~~~~---------------------- 138 (566)
++ ..+..+++|++|++++|.+....|+ ++.+++|+ +|++++|...+..+..+..
T Consensus 144 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 223 (606)
T 3t6q_A 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223 (606)
T ss_dssp CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTT
T ss_pred cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhcc
Confidence 63 3344588999999998886655454 77777787 7888887766554433322
Q ss_pred ---------------------------cc--cCcEEecCCCCCCCccCCc-C-CCCCccEEEecCCCCCCcCCccc---C
Q 037314 139 ---------------------------LN--KLVFLNLGHCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFPEIS---C 184 (566)
Q Consensus 139 ---------------------------l~--~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~~---~ 184 (566)
+. +|+.|++++| .++.++.. + .+++|++|++++|. ++.+|..+ .
T Consensus 224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~ 301 (606)
T 3t6q_A 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLS 301 (606)
T ss_dssp TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCT
T ss_pred ccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccc
Confidence 11 5677777774 55566654 3 78999999999975 45676544 4
Q ss_pred CCCEEecCCCCCccc-CccccCCCCCcEEeccCCCCcccccc-cccCCCCCcEEeccCCcCCccc--ccccCCCCcccee
Q 037314 185 NIEHLDLKETAIEEL-PSSIGNLSRLVHLDLTNCSRLKSVSS-SLCNLKSLVNLYLSGCLKLEKL--PEEIGNLESLEVM 260 (566)
Q Consensus 185 ~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~ls~~~~l~~~--p~~l~~l~~L~~L 260 (566)
+|++|++++|.+..+ |..+..+++|++|++++|...+.+|. .+..+++|++|++++|...+.. +..+..+++|+.|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 788999999999877 45788999999999999887766664 4888999999999998876654 6778899999999
Q ss_pred ccCCcccccc-CcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEecc
Q 037314 261 LANETAISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLA 337 (566)
Q Consensus 261 ~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls 337 (566)
++++|.+..+ |..+..+++|++|++++|..... ..+. +..+++|++|++++|.+.. .|..++.+++|++|+++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK----DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC----TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc----ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 9999988865 55788899999999998874432 1222 6778899999999999887 46778889999999999
Q ss_pred CCCCee--c--CcchhcCCCCcEecccccccCCcCC----CCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeC
Q 037314 338 ENDFEK--I--PSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCN 409 (566)
Q Consensus 338 ~n~l~~--l--p~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~ 409 (566)
+|.++. + +..+..+++|++|++++|+.....| .++.++.|++.++. +..+... .....+.+ .+++.+
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIE---ALSHLKGI-YLNLAS 532 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCGGGGG---GGTTCCSC-EEECCS
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc-cCcCChh---HhCccccc-EEECcC
Confidence 998864 2 3568889999999999987443333 46667888888773 3332211 11223344 555444
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHhhhccc
Q 037314 410 CFKLNRNEVGEIVEGALKKIQIMATWWKQ 438 (566)
Q Consensus 410 C~~L~~~~~~~i~~~~~~~l~~l~~~~~~ 438 (566)
+ .+..+.+..+..+..++.....
T Consensus 533 N------~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 533 N------HISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp S------CCCCCCGGGHHHHHTSSEEECT
T ss_pred C------cccccCHhhcccCCCCCEEeCC
Confidence 4 3334445556666666554333
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=297.12 Aligned_cols=345 Identities=15% Similarity=0.199 Sum_probs=253.2
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcc--c
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ--L 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--l 85 (566)
.+.+.+|.++++||+|++++ +......|+.+..++ +|++|++++|.++.+|.. .+++|++|++++|+++. +
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISH-----NRIQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCS-----SCCCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCC
T ss_pred ccChhhccccccccEEecCC-----CccCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCccccccc
Confidence 45668899999999999988 455566677888886 899999999999998887 88999999999999986 5
Q ss_pred cccCCCCCCCcEEecCCCCCCCCCCCCCCCCCc--cEEEeeCCCC--ccccchhhhh-----------------------
Q 037314 86 WNGVQNLAALKRLNLSYSKQLSRIPDISLAFNI--ERLDLVGCAS--LIETHSSIQH----------------------- 138 (566)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--~~~~~~~~~~----------------------- 138 (566)
|..+..+++|++|++++|.+.. .++..+++| ++|++++|.. .+..|..+..
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred hhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 6788999999999999987654 346667777 8888888876 4455554444
Q ss_pred ---cccCcEEecCCCC-------C------CCccCC---------------------cCCCCCccEEEecCCCCCCcCCc
Q 037314 139 ---LNKLVFLNLGHCI-------S------LKSLPT---------------------GINLDSLKVLYLGGCSNLKRFPE 181 (566)
Q Consensus 139 ---l~~L~~L~L~~c~-------~------l~~lp~---------------------~~~l~~L~~L~L~~~~~l~~~~~ 181 (566)
+++|+.|++++|. . +..++. ....++|++|++++|...+.+|.
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred hhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 4455555555432 0 000000 00134677777777765556665
Q ss_pred cc-----C---CCCEEecCCCCCcccC-ccccCC---CCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccc
Q 037314 182 IS-----C---NIEHLDLKETAIEELP-SSIGNL---SRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPE 249 (566)
Q Consensus 182 ~~-----~---~L~~L~L~~~~i~~lp-~~~~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~ 249 (566)
.+ . +|+.++++++.+ .+| ..+..+ .+|+.|++++|...... ....+++|++|++++|...+.+|.
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred chhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh
Confidence 54 4 455568888888 777 344444 67899999887654322 125788899999999888887888
Q ss_pred ccCCCCccceeccCCccccc---cCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCC
Q 037314 250 EIGNLESLEVMLANETAISQ---VPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESL 325 (566)
Q Consensus 250 ~l~~l~~L~~L~l~~n~l~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l 325 (566)
.+..+++|+.|++++|.++. +|..+..+++|++|++++|.....++ ...+..+++|++|++++|.+++ +|..+
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG---GCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc---cchhccCccCCEEECcCCCCCcchhhhh
Confidence 88889999999999998884 44568888999999999887543211 1125677889999999998865 55554
Q ss_pred CCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCC
Q 037314 326 GRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 326 ~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
. ++|+.|+|++|.++.+|..+..+++|++|++++|+ ++.+|.
T Consensus 420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 3 78999999999999999888889999999999886 666664
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=294.86 Aligned_cols=385 Identities=20% Similarity=0.190 Sum_probs=268.1
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCcc-
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQ- 84 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~- 84 (566)
.+.+++|+++++||+|++++ +......|..+..++ +|++|++++|.++.+|.. + .+++|++|++++|.++.
T Consensus 66 ~i~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 139 (570)
T 2z63_A 66 TIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (570)
T ss_dssp EECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred ccCcccccCchhCCEEeCcC-----CcCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCCcccee
Confidence 45678899999999999998 344555567888886 899999999999999863 4 89999999999999985
Q ss_pred -ccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCc----cEEEeeCCCCccccchhhhhcccCcEEecCCCC-------
Q 037314 85 -LWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNI----ERLDLVGCASLIETHSSIQHLNKLVFLNLGHCI------- 151 (566)
Q Consensus 85 -l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L----~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~------- 151 (566)
+|..+.++++|++|++++|.+....+. ++.+++| +.|++++|......+..+..+ +|+.|++++|.
T Consensus 140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~ 218 (570)
T 2z63_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218 (570)
T ss_dssp CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHH
T ss_pred cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchh
Confidence 689999999999999999987655443 6666666 778888877665555555444 56666665531
Q ss_pred ---------------------------------------------------CCCccCCcC-CCCCccEEEecCCCCCCcC
Q 037314 152 ---------------------------------------------------SLKSLPTGI-NLDSLKVLYLGGCSNLKRF 179 (566)
Q Consensus 152 ---------------------------------------------------~l~~lp~~~-~l~~L~~L~L~~~~~l~~~ 179 (566)
....+|..+ .+++|++|++++|.. ..+
T Consensus 219 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l 297 (570)
T 2z63_A 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERV 297 (570)
T ss_dssp HHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSC
T ss_pred hhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhh
Confidence 011122323 567888888887653 345
Q ss_pred CcccC--CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccc--ccccCCCC
Q 037314 180 PEISC--NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKL--PEEIGNLE 255 (566)
Q Consensus 180 ~~~~~--~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~--p~~l~~l~ 255 (566)
|..+. +|++|++++|.+..+|. ..+++|+.|++++|......+. ..+++|++|++++|...... +..+..++
T Consensus 298 ~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 298 KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373 (570)
T ss_dssp CBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred hhhhccCCccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC
Confidence 54332 67788888888887776 4677788888887766555543 56777888888777654432 56677777
Q ss_pred ccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEE
Q 037314 256 SLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYL 334 (566)
Q Consensus 256 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L 334 (566)
+|+.|++++|.+..++..+..+++|++|++++|....... ...+..+++|++|++++|.+.. .|..+..+++|++|
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT---SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccc---hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 8888888887777776667777788888887776332100 1125667777888888777776 45667777778888
Q ss_pred eccCCCCe--ecCcchhcCCCCcEecccccccCCcCC----CCCCCCeEeecCCcCcccccCcchhcccccccceeeEee
Q 037314 335 NLAENDFE--KIPSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFC 408 (566)
Q Consensus 335 ~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~ 408 (566)
++++|.++ .+|..+..+++|++|++++|+.....| .++.++.|++.+| .++.++.. .....+.++.+++.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG---IFDRLTSLQKIWLH 526 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT---TTTTCTTCCEEECC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHH---HhhcccCCcEEEec
Confidence 88877765 577777777788888887776433323 3556677777776 34444321 11334556677766
Q ss_pred CCC
Q 037314 409 NCF 411 (566)
Q Consensus 409 ~C~ 411 (566)
+++
T Consensus 527 ~N~ 529 (570)
T 2z63_A 527 TNP 529 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-31 Score=283.57 Aligned_cols=314 Identities=19% Similarity=0.181 Sum_probs=172.5
Q ss_pred CCccceEEEeCCccCCCCC-CCC-CCCCeEEEEcCCCCCc-cc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccE
Q 037314 46 LFNELRYFYWDGYPLKSLP-SKN-IPEHLVSLEMPHSNIE-QL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIER 120 (566)
Q Consensus 46 l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~ 120 (566)
+|++|++|++++|.++.++ ..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|.+....|+ ++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 3456666666666666553 333 5666666666666664 33 34456666666666666665544443 666666666
Q ss_pred EEeeCCCCccccchh--hhhcccCcEEecCCCCCCCccCCc-C-CCCCccEEEecCCCCCCcCCccc-----CCCCEEec
Q 037314 121 LDLVGCASLIETHSS--IQHLNKLVFLNLGHCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFPEIS-----CNIEHLDL 191 (566)
Q Consensus 121 L~L~~c~~~~~~~~~--~~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~~-----~~L~~L~L 191 (566)
|++++|...+..+.. ++.+++|++|++++|......|.. + .+++|++|++++|......+..+ .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 666666555444333 566666666666664332222433 2 56666666666665444433322 24555566
Q ss_pred CCCCCcccCcc---------ccCCCCCcEEeccCCCCcccccccccC---------------------------------
Q 037314 192 KETAIEELPSS---------IGNLSRLVHLDLTNCSRLKSVSSSLCN--------------------------------- 229 (566)
Q Consensus 192 ~~~~i~~lp~~---------~~~l~~L~~L~L~~~~~l~~lp~~l~~--------------------------------- 229 (566)
+++.+..++.. +..+++|++|++++|...+..|..+..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 66665554432 224455666666666555444433322
Q ss_pred ------CCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCCCCCCCCCCCCcccc
Q 037314 230 ------LKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPIL 302 (566)
Q Consensus 230 ------l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 302 (566)
.++|++|++++|...+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.... .....+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~ 343 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS----IDSRMF 343 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGG
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC----cChhHh
Confidence 24556666666555555555566666666666666666544 3355556666666666654321 111124
Q ss_pred cCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccc
Q 037314 303 FQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 303 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
..+++|++|++++|++..+ |..+..+++|++|+|++|+++.+|.. +..+++|++|++++|+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 5556666666666666553 45555666666666666666555543 3556666666666655
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-32 Score=294.07 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=199.0
Q ss_pred cCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccc--
Q 037314 9 LNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-- 86 (566)
Q Consensus 9 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-- 86 (566)
+.+++|.++++||.|++++ +......|+.+..++ +|++|++++|.++.+|.. .+++|++|++++|+++.++
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p 139 (562)
T 3a79_B 67 LRMPDISFLSELRVLRLSH-----NRIRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVC 139 (562)
T ss_dssp CCGGGTTTCTTCCEEECCS-----CCCCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCC
T ss_pred cChhhhccCCCccEEECCC-----CCCCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCch
Confidence 4456677777777777766 344444456666664 677777777777777666 6677777777777776553
Q ss_pred ccCCCCCCCcEEecCCCCCCCCCCCCCCCCCc--cEEEeeCCCC--ccccchhhhh------------------------
Q 037314 87 NGVQNLAALKRLNLSYSKQLSRIPDISLAFNI--ERLDLVGCAS--LIETHSSIQH------------------------ 138 (566)
Q Consensus 87 ~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--~~~~~~~~~~------------------------ 138 (566)
..+.++++|++|++++|.+.. .++..+++| ++|++++|.. .+..|..+..
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 217 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE
T ss_pred HhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcc
Confidence 566677777777777766443 234444444 7777776655 3444433333
Q ss_pred --cccCcEEecCCCCC----C----------------------------CccCCcCCCCCccEEEecCCCCCCcCCccc-
Q 037314 139 --LNKLVFLNLGHCIS----L----------------------------KSLPTGINLDSLKVLYLGGCSNLKRFPEIS- 183 (566)
Q Consensus 139 --l~~L~~L~L~~c~~----l----------------------------~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~- 183 (566)
+++|+.|++++|.. + ..++......+|++|++++|...+.+|...
T Consensus 218 ~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 297 (562)
T 3a79_B 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297 (562)
T ss_dssp SSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC
T ss_pred cccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh
Confidence 22334444433210 0 000000011244444444443333333332
Q ss_pred ----CCCCEEecC---CCCCcccCc-ccc---CCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccC
Q 037314 184 ----CNIEHLDLK---ETAIEELPS-SIG---NLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIG 252 (566)
Q Consensus 184 ----~~L~~L~L~---~~~i~~lp~-~~~---~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~ 252 (566)
.+++.|.+. .+.+ .+|. .+. ...+|++|++++|...... ....+++|++|++++|...+..|..+.
T Consensus 298 ~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 298 TYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 233333221 1222 2221 010 1134666676666543211 115677788888888777777777777
Q ss_pred CCCccceeccCCccccccC---cccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCCCCC
Q 037314 253 NLESLEVMLANETAISQVP---PSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESLGRS 328 (566)
Q Consensus 253 ~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 328 (566)
++++|+.|++++|.++.++ ..+..+++|+.|++++|.....++ ...+..+++|++|++++|.+++ +|..+.
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC---hhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 8888888888888777554 456777888888888777443211 1125567778888888887765 444443
Q ss_pred CCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCC
Q 037314 329 PSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 329 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
++|+.|+|++|.++.+|..+..+++|++|++++|+ ++.+|.
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence 67888888888888888777778888888888776 555653
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=1.4e-30 Score=290.17 Aligned_cols=407 Identities=19% Similarity=0.157 Sum_probs=274.7
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l 85 (566)
.+...+|.++++|++|+++++ ......|..+..++ +|++|++++|.++.++.. + .+++|++|++++|+++.+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSN-----SIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-----CCCCCCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred ccChhhhccCCCCCEEECCCC-----ccCccChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 345567888888888888873 33333345666664 788888888877765533 3 677777777777777655
Q ss_pred ccc---CCCCCCCcEEecCCCCCCCCC---------------------------------------------------CC
Q 037314 86 WNG---VQNLAALKRLNLSYSKQLSRI---------------------------------------------------PD 111 (566)
Q Consensus 86 ~~~---~~~l~~L~~L~Ls~~~~l~~~---------------------------------------------------p~ 111 (566)
+.. ...+++|+.|++++|.+.... |.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 432 223455555555555433222 21
Q ss_pred -CCCCC--CccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCC-----cCCc-
Q 037314 112 -ISLAF--NIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLK-----RFPE- 181 (566)
Q Consensus 112 -l~~l~--~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~-----~~~~- 181 (566)
+..++ +|++|++++|...+..+..++.+++|++|++++|......|..+ .+++|++|++++|.... .+|.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 33333 38888888887776667778888888888888854444444444 67777777777653221 2221
Q ss_pred ------ccCCCCEEecCCCCCcccCc-cccCCCCCcEEecc----------------------------CCCCccccccc
Q 037314 182 ------ISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLT----------------------------NCSRLKSVSSS 226 (566)
Q Consensus 182 ------~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~----------------------------~~~~l~~lp~~ 226 (566)
...+|++|++++|.+..++. .+..+++|++|+++ +|...+..|..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 23467777777777766543 35555555555554 44444555778
Q ss_pred ccCCCCCcEEeccCCcCCcccc-cccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCCCCCCCCCCCCccc-cc
Q 037314 227 LCNLKSLVNLYLSGCLKLEKLP-EEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LF 303 (566)
Q Consensus 227 l~~l~~L~~L~ls~~~~l~~~p-~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~ 303 (566)
+..+++|++|++++|...+.+| ..+.++++|+.|++++|.+..+ +..+..+++|+.|++++|..... ...|. +.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~p~~~~ 477 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV---DSSPSPFQ 477 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT---TCSSCTTT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc---ccCCcccc
Confidence 8899999999999998877666 6889999999999999999866 45788899999999999874321 11333 78
Q ss_pred CCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc---------chhcCCCCcEecccccccCCcCC----
Q 037314 304 QLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS---------SIKQLSKLLFLTLRNCKRLQSLP---- 369 (566)
Q Consensus 304 ~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~---------~i~~l~~L~~L~L~~c~~L~~lp---- 369 (566)
.+++|+.|++++|+++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|+ ++.+|
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 8999999999999999976 458899999999999999886532 27889999999999986 55666
Q ss_pred -CCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCCCCCChhhhhhhHHHHHH-HHHHHhh
Q 037314 370 -ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNCFKLNRNEVGEIVEGALK-KIQIMAT 434 (566)
Q Consensus 370 -~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C~~L~~~~~~~i~~~~~~-~l~~l~~ 434 (566)
.++.++.|++.++ .++.++... ....+.++.+++.++ .+..+++.++. .+..++.
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~~~~---~~~l~~L~~L~L~~N------~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLPASV---FNNQVSLKSLNLQKN------LITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECTTS------CCCBCCHHHHHHHHTTCSE
T ss_pred ccccCcceeECCCC-CCCcCCHhH---hCCCCCCCEEECCCC------cCCccChhHhcccccccCE
Confidence 3556688888664 566655321 123456777776554 34445445444 3444444
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=8.4e-32 Score=292.49 Aligned_cols=382 Identities=18% Similarity=0.203 Sum_probs=255.0
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCcc-
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQ- 84 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~- 84 (566)
.+.+.+|.++++||+|++++ +......|+.+..++ +|++|++++|.++.+|.. + .+++|++|++++|+++.
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKS-----SRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp EECSSTTSSCTTCCEEECTT-----SCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred ccChhhhhcCCcccEEECCC-----CCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 34567899999999999998 455566677888886 899999999999999875 4 89999999999999995
Q ss_pred -ccccCCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-
Q 037314 85 -LWNGVQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI- 160 (566)
Q Consensus 85 -l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~- 160 (566)
++..+..+++|++|++++|.....+| .++.+++|++|++++|...+..|..++.+++|+.|+++++ ....+|..+
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~ 192 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFA 192 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHH
T ss_pred chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhH
Confidence 46789999999999999998666665 4899999999999999988888888888888888887764 334444433
Q ss_pred -CCCCccEEEecCCCCCCc------CCcccC----------------------------CCCEEecCCCCCcccC-----
Q 037314 161 -NLDSLKVLYLGGCSNLKR------FPEISC----------------------------NIEHLDLKETAIEELP----- 200 (566)
Q Consensus 161 -~l~~L~~L~L~~~~~l~~------~~~~~~----------------------------~L~~L~L~~~~i~~lp----- 200 (566)
.+++|++|++++|...+. +..... +++.++++++.+..++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 466677777766543321 001111 2233333332222111
Q ss_pred -------------------------------ccccCCCCCcEEeccCCCCcccccccc-cCCCCCcEEeccCCcCCcccc
Q 037314 201 -------------------------------SSIGNLSRLVHLDLTNCSRLKSVSSSL-CNLKSLVNLYLSGCLKLEKLP 248 (566)
Q Consensus 201 -------------------------------~~~~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~ls~~~~l~~~p 248 (566)
......++|+.|++++|. +..+|..+ .++++|++|++++|...+.+|
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccc
Confidence 001123456666666654 34556554 457777777777776665553
Q ss_pred c---ccCCCCccceeccCCccccccC---cccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCccc
Q 037314 249 E---EIGNLESLEVMLANETAISQVP---PSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITEL 321 (566)
Q Consensus 249 ~---~l~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~l 321 (566)
. .++.+++|+.|++++|.++.++ ..+..+++|++|++++|.... +|. +..+++|++|++++|++..+
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------lp~~~~~~~~L~~L~Ls~N~l~~l 425 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP------MPDSCQWPEKMRFLNLSSTGIRVV 425 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC------CCSCCCCCTTCCEEECTTSCCSCC
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc------CChhhcccccccEEECCCCCcccc
Confidence 2 3566777777777777776654 246667777777777775431 333 55667777777777777766
Q ss_pred CCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCC---CCCCCeEeecCCcCcccccCcchhcccc
Q 037314 322 PESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPE---LPCGSTIFARHCTSLETLSSLSTLFTRS 398 (566)
Q Consensus 322 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~~~L~~~~c~~L~~l~~~~~~~~~~ 398 (566)
|..+ .++|++|+|++|+++.++ ..+++|++|++++|+ ++.||. ++.++.|++.++ .++.++.. ....
T Consensus 426 ~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~ 495 (549)
T 2z81_A 426 KTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRN-QLKSVPDG---IFDR 495 (549)
T ss_dssp CTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSS-CCCCCCTT---GGGG
T ss_pred cchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCC-ccCCcCHH---HHhc
Confidence 6544 256777777777776654 356677777777774 556663 455567777665 34444321 1133
Q ss_pred cccceeeEeeCCCCC
Q 037314 399 SELWQAFDFCNCFKL 413 (566)
Q Consensus 399 ~~~l~~l~~~~C~~L 413 (566)
.+.++.+++.+++-.
T Consensus 496 l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 496 LTSLQKIWLHTNPWD 510 (549)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CcccCEEEecCCCcc
Confidence 455677777766643
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.5e-30 Score=265.95 Aligned_cols=298 Identities=20% Similarity=0.215 Sum_probs=228.7
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCAS 128 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 128 (566)
+|+.|++.++.++.+|....+++|++|++++|+++.++. +..+++|++|++++|.+ ..++.+..+++|++|++++|..
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCC
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCcc
Confidence 788888888888887764577888888888888887766 77888888888888864 4466788888888888888765
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCC-cccCCCCEEecCCCCCcccCccccCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFP-EISCNIEHLDLKETAIEELPSSIGNLS 207 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~~~~l~ 207 (566)
... +. +..+++|++|++++|..+..++....+++|++|++++|......+ ....+|++|++++|.+..++. +..++
T Consensus 123 ~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 199 (347)
T 4fmz_A 123 SDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLT 199 (347)
T ss_dssp CCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCT
T ss_pred cCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCC
Confidence 443 33 777888888888887777766664578888888888875433222 234578888888888888776 77888
Q ss_pred CCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccC
Q 037314 208 RLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDR 287 (566)
Q Consensus 208 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 287 (566)
+|+.|++++|......+ +..+++|++|++++|......+ +..+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS 274 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred ccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccC
Confidence 89999998876655443 7788889999998876654333 788888999999988888764 577888999999988
Q ss_pred CCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 288 CKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 288 ~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
|.... ++.+..+++|++|++++|.+.+. +..++.+++|++|+|++|.++.++. +..+++|++|++++|+
T Consensus 275 n~l~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 275 NQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCC------CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CccCC------ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 86433 35577888999999999988874 4667888899999999999888766 8888999999998886
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=1.8e-30 Score=276.19 Aligned_cols=339 Identities=19% Similarity=0.249 Sum_probs=260.2
Q ss_pred hcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCC
Q 037314 15 TKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAA 94 (566)
Q Consensus 15 ~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~ 94 (566)
..+++|+.|++.++ ....+| ++..++ +|++|++++|.++.+|....+++|++|++++|++..++. +..+++
T Consensus 43 ~~l~~l~~L~l~~~------~i~~l~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 43 TDLDQVTTLQADRL------GIKSID-GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHHTCCEEECCSS------CCCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred hHhccccEEecCCC------CCccCc-chhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCC
Confidence 34678888888773 122344 466765 899999999999988874488999999999999998876 889999
Q ss_pred CcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCC
Q 037314 95 LKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCS 174 (566)
Q Consensus 95 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~ 174 (566)
|++|++++|.+. .++.+..+++|++|++++|.... ++ .++.+++|+.|++++ .+..++....+++|++|++++|.
T Consensus 114 L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 114 LTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCC-CChHHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc
Confidence 999999998744 45558889999999999986544 33 488899999999863 44555554488999999999876
Q ss_pred CCCcCCc--ccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccC
Q 037314 175 NLKRFPE--ISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIG 252 (566)
Q Consensus 175 ~l~~~~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~ 252 (566)
. ..++. ...+|++|++++|.+..++. ++.+++|+.|++++|.... ++ .+..+++|++|++++|...+..+ +.
T Consensus 189 l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 189 V-SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp C-CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred C-CCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hh
Confidence 3 33432 34588999999998888766 7788899999999876544 33 57788899999999987665544 78
Q ss_pred CCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCC
Q 037314 253 NLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLN 332 (566)
Q Consensus 253 ~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 332 (566)
.+++|+.|++++|.+..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|++.+++. +..+++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 334 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQ 334 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC------CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCC
T ss_pred cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC------chhhcCCCCCCEEECcCCcCCCchh-hccCccCC
Confidence 88999999999998888776 7888999999999887543 3447788899999999998888655 67888999
Q ss_pred EEeccCCCCeecCcchhcCCCCcEecccccccCCcCC--CCCCCCeEeecCC
Q 037314 333 YLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLP--ELPCGSTIFARHC 382 (566)
Q Consensus 333 ~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp--~lp~~~~L~~~~c 382 (566)
+|++++|.++.++ .+..+++|+.|++++|+.....| .++.++.|++.+|
T Consensus 335 ~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 335 RLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred EeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 9999999888874 68888999999999887443333 3344455555444
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=296.31 Aligned_cols=334 Identities=18% Similarity=0.141 Sum_probs=261.5
Q ss_pred cCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCcc-CCCC-CCCC-CCCCeEEEEcCCCCCccc-cccCCC
Q 037314 16 KMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYP-LKSL-PSKN-IPEHLVSLEMPHSNIEQL-WNGVQN 91 (566)
Q Consensus 16 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~~~i~~l-~~~~~~ 91 (566)
-.++|+.|++++ +......+..+..++ +|++|++++|. ...+ |..| .+++|++|+|++|++..+ |..+..
T Consensus 22 lp~~l~~LdLs~-----N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSF-----NYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEES-----CCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCC-----CcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 457899999998 456667788899986 89999999994 5566 4555 899999999999999976 788999
Q ss_pred CCCCcEEecCCCCCCCCCCC---CCCCCCccEEEeeCCCCccccc-hhhhhcccCcEEecCCCCCCCccCCcC-CC--CC
Q 037314 92 LAALKRLNLSYSKQLSRIPD---ISLAFNIERLDLVGCASLIETH-SSIQHLNKLVFLNLGHCISLKSLPTGI-NL--DS 164 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l--~~ 164 (566)
+++|++|+|++|.+...+|. ++.+++|++|+|++|...+..+ ..++++++|++|++++|......|..+ .+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999999998775553 8999999999999998877644 679999999999999965444455544 34 89
Q ss_pred ccEEEecCCCCCCcCCcccC---------CCCEEecCCCCCcc-cCccc-------------------------------
Q 037314 165 LKVLYLGGCSNLKRFPEISC---------NIEHLDLKETAIEE-LPSSI------------------------------- 203 (566)
Q Consensus 165 L~~L~L~~~~~l~~~~~~~~---------~L~~L~L~~~~i~~-lp~~~------------------------------- 203 (566)
|+.|++++|......|..+. .|+.|++++|.+.. ++..+
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 99999999987766554322 38999999986642 22111
Q ss_pred -----cC--CCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-Ccccc
Q 037314 204 -----GN--LSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIA 275 (566)
Q Consensus 204 -----~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~ 275 (566)
.. .++|+.|++++|......|..+..+++|++|++++|...+..|..+.++++|+.|++++|.++.+ |..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 11 26899999999988888888899999999999999988888888999999999999999999876 66889
Q ss_pred cCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcc--------
Q 037314 276 CLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSS-------- 347 (566)
Q Consensus 276 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-------- 347 (566)
.+++|+.|++++|.... .....+..+++|+.|++++|.++.++. +++|+.|++++|.++.+|..
T Consensus 336 ~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAI----IQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIH 407 (844)
T ss_dssp SCTTCCEEECCSCCCCC----CCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCc----cChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceee
Confidence 99999999999997432 112236778888888888888876543 45555555555555544422
Q ss_pred --------------hhcCCCCcEecccccc
Q 037314 348 --------------IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 348 --------------i~~l~~L~~L~L~~c~ 363 (566)
+..+++|+.|++++|+
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCc
Confidence 3466777777777776
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=281.87 Aligned_cols=366 Identities=16% Similarity=0.114 Sum_probs=261.4
Q ss_pred cEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccc-cccCCCCCCCcE
Q 037314 21 RFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKR 97 (566)
Q Consensus 21 r~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~ 97 (566)
|.|+++++ ....+|..+ +++|++|++++|.++.++. .+ .+++|++|++++|+++.+ |..+..+++|++
T Consensus 3 ~~l~ls~n------~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKN------GLIHVPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTS------CCSSCCCSC---CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCC------Ccccccccc---cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 46677662 223567654 3699999999999999884 34 899999999999999987 678999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCccEEEeeCCCCcc-ccchhhhhcccCcEEecCCCCCCCccCCcCCCCCc--cEEEecCCC
Q 037314 98 LNLSYSKQLSRIPDISLAFNIERLDLVGCASLI-ETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSL--KVLYLGGCS 174 (566)
Q Consensus 98 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L~~~~ 174 (566)
|+|++|.+. .+|.. .+++|++|++++|...+ .+|..++.+++|++|++++|. ++.. ....+++| ++|++++|.
T Consensus 74 L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 74 LDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS-SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG-GGGGGTTSCEEEEEEEECT
T ss_pred EecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh-hccccccceeeEEEeeccc
Confidence 999999865 67766 89999999999998876 578899999999999999954 4431 11267777 999999987
Q ss_pred C--CCcCCcccCC-------------------------------------------------------------------
Q 037314 175 N--LKRFPEISCN------------------------------------------------------------------- 185 (566)
Q Consensus 175 ~--l~~~~~~~~~------------------------------------------------------------------- 185 (566)
. ....|..+..
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 6 3444433332
Q ss_pred -------------------CCEEecCCCCCc-ccCccc-----cCCCCCcEEeccCCCCccccc-ccccCC---CCCcEE
Q 037314 186 -------------------IEHLDLKETAIE-ELPSSI-----GNLSRLVHLDLTNCSRLKSVS-SSLCNL---KSLVNL 236 (566)
Q Consensus 186 -------------------L~~L~L~~~~i~-~lp~~~-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L 236 (566)
|++|++++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 223333333332 333333 3333333333333332 222 112221 345555
Q ss_pred eccCCcCCcccccccCCCCccceeccCCccccc-cCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecc
Q 037314 237 YLSGCLKLEKLPEEIGNLESLEVMLANETAISQ-VPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLV 314 (566)
Q Consensus 237 ~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~ 314 (566)
++++|...... ....+++|+.|++++|.++. +|..+..+++|++|++++|....- ..+|. +..+++|++|+++
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL---SKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH---HHHHHHHTTCTTCCEEECC
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc---ccchHHHhhCCCCCEEECC
Confidence 55554432211 12688999999999999996 788899999999999999985420 01233 7889999999999
Q ss_pred cCCCcc-cCCC-CCCCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCCC----CCCCCeEeecCCcCccc
Q 037314 315 DCGITE-LPES-LGRSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLPE----LPCGSTIFARHCTSLET 387 (566)
Q Consensus 315 ~~~l~~-lp~~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~L~~~~c~~L~~ 387 (566)
+|.+.. +|.. +..+++|++|++++|.++ .+|..+. ++|+.|++++|+ ++.+|. ++.++.|++.++ .++.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCc
Confidence 999998 8864 788999999999999985 5555543 799999999996 668874 777899999997 5777
Q ss_pred ccCcchhcccccccceeeEeeCCCCC
Q 037314 388 LSSLSTLFTRSSELWQAFDFCNCFKL 413 (566)
Q Consensus 388 l~~~~~~~~~~~~~l~~l~~~~C~~L 413 (566)
++.. .....+.++.+++.+++--
T Consensus 459 l~~~---~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 459 VPDG---IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCTT---TTTTCTTCCEEECCSSCBC
T ss_pred cCHH---HhccCCcccEEECcCCCCc
Confidence 6643 1234566788887776543
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.5e-30 Score=271.95 Aligned_cols=335 Identities=19% Similarity=0.258 Sum_probs=273.6
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 127 (566)
++++.|++.++.++++|....+++|++|++++|.++.++. +..+++|++|++++|.+....+ ++.+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 4899999999999999975689999999999999999877 9999999999999998665544 9999999999999997
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCC--cccCCCCEEecCCCCCcccCccccC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFP--EISCNIEHLDLKETAIEELPSSIGN 205 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~~~~ 205 (566)
.... +. +..+++|++|++++| .+..++....+++|+.|+++++ ...++ ....+|++|++++|.+..++. +..
T Consensus 124 l~~~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~ 197 (466)
T 1o6v_A 124 ITDI-DP-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDISV-LAK 197 (466)
T ss_dssp CCCC-GG-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCC-hH-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcCCCChh-hcc
Confidence 5554 33 899999999999995 5667776558999999999753 23333 334589999999999998864 889
Q ss_pred CCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEc
Q 037314 206 LSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSF 285 (566)
Q Consensus 206 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 285 (566)
+++|++|++++|...+..| +..+++|++|++++|...+ + ..+..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 9999999999988766555 7789999999999987554 3 367889999999999999998776 888999999999
Q ss_pred cCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccccC
Q 037314 286 DRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRL 365 (566)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L 365 (566)
++|.... ++.+..+++|++|++++|++.+++. ++.+++|+.|++++|.++.++. +..+++|++|++++|+ +
T Consensus 273 ~~n~l~~------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l 343 (466)
T 1o6v_A 273 GANQISN------ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-V 343 (466)
T ss_dssp CSSCCCC------CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-C
T ss_pred CCCccCc------cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-c
Confidence 9997543 3447889999999999999999765 7889999999999999988765 7899999999999996 5
Q ss_pred CcCC---CCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCC
Q 037314 366 QSLP---ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNC 410 (566)
Q Consensus 366 ~~lp---~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C 410 (566)
+.++ .++.++.|++.+|. +..+... ...+.++.+++.+|
T Consensus 344 ~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-----~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 344 SDVSSLANLTNINWLSAGHNQ-ISDLTPL-----ANLTRITQLGLNDQ 385 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSC-CCBCGGG-----TTCTTCCEEECCCE
T ss_pred CCchhhccCCCCCEEeCCCCc-cCccchh-----hcCCCCCEEeccCC
Confidence 5444 45666888888774 3333221 33445555655444
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.5e-29 Score=267.52 Aligned_cols=322 Identities=21% Similarity=0.248 Sum_probs=180.6
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCc------------cceEEEeCCccCCCCCCCCCCCCeEEEEcC
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFN------------ELRYFYWDGYPLKSLPSKNIPEHLVSLEMP 78 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~------------~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~ 78 (566)
+.+|.+|++|++|+++++ .....+|.++..+.. ++++|+++++.++.+|.. +++|++|+++
T Consensus 27 P~~i~~L~~L~~L~l~~n-----~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~ 99 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWS-----EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVAS 99 (454)
T ss_dssp -------CCHHHHHHHHH-----HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECC
T ss_pred ChhHhcccchhhhhccCC-----cccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEcc
Confidence 345677777777777763 223344544444321 124455555554444441 2444444444
Q ss_pred CCCCccccccC----------------CC-CCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhccc
Q 037314 79 HSNIEQLWNGV----------------QN-LAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNK 141 (566)
Q Consensus 79 ~~~i~~l~~~~----------------~~-l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~ 141 (566)
+|+++.+|..+ .. .++|++|++++|.+. .+|+++.+++|++|++++|...+ +|.. ..+
T Consensus 100 ~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-lp~~---~~~ 174 (454)
T 1jl5_A 100 CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK-LPDL---PPS 174 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcCcc-cCCC---ccc
Confidence 44444443221 00 145666666666543 35566666666666666665432 3332 236
Q ss_pred CcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcc
Q 037314 142 LVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLK 221 (566)
Q Consensus 142 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~ 221 (566)
|++|++++| .++.+|....+++|++|++++|. +..+|....+|++|++++|.+..+|. ++.+++|++|++++|...+
T Consensus 175 L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 175 LEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred ccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence 666666663 44556543366666666666654 33355555566777777766666663 6666677777776654432
Q ss_pred cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc
Q 037314 222 SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 222 ~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
+|. .+++|++|++++|...+ +|.. +++|+.|++++|.++.+|.. .++|+.|++++|....
T Consensus 252 -l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~--------- 311 (454)
T 1jl5_A 252 -LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS--------- 311 (454)
T ss_dssp -CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE---------
T ss_pred -ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCc---------
Confidence 443 23566677776665433 4432 35666777777766655432 2566777777665321
Q ss_pred ccCC-CCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccccCCcCCCCCCC
Q 037314 302 LFQL-QNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRLQSLPELPCG 374 (566)
Q Consensus 302 ~~~l-~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~ 374 (566)
+..+ ++|++|++++|++.++|.. +++|++|++++|.++.+|. .+++|++|++++|+ ++.+|.+|..
T Consensus 312 i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~ 378 (454)
T 1jl5_A 312 LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPES 378 (454)
T ss_dssp ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTT
T ss_pred ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHH
Confidence 2223 4778888888877777654 4678888888888777776 46778888888776 5555555543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=5.1e-30 Score=271.82 Aligned_cols=351 Identities=17% Similarity=0.120 Sum_probs=244.6
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVGC 126 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c 126 (566)
-+.++..+..++.+|. -+++|++|++++|+++.+ +..+..+++|++|++++|.+...++ .|.++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4567788888999998 558999999999999987 6789999999999999998775654 3899999999999999
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCc--C-CCCCccEEEecCCCCCCcCCcc----cCCCCEEecCCCCCccc
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTG--I-NLDSLKVLYLGGCSNLKRFPEI----SCNIEHLDLKETAIEEL 199 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~L~~~~~l~~~~~~----~~~L~~L~L~~~~i~~l 199 (566)
......|..++.+++|++|++++|.....+|.. + .+++|++|++++|......|.. ..+|++|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 988888999999999999999997544434433 3 7999999999999876665643 46899999999999876
Q ss_pred C-ccccCC--CCCcEEeccCCCCccccccc--------ccCCCCCcEEeccCCcCCcccccccCCC---CccceeccCCc
Q 037314 200 P-SSIGNL--SRLVHLDLTNCSRLKSVSSS--------LCNLKSLVNLYLSGCLKLEKLPEEIGNL---ESLEVMLANET 265 (566)
Q Consensus 200 p-~~~~~l--~~L~~L~L~~~~~l~~lp~~--------l~~l~~L~~L~ls~~~~l~~~p~~l~~l---~~L~~L~l~~n 265 (566)
+ ..+..+ .+|+.|++++|......+.. +..+++|++|++++|...+..|..+..+ ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 4 445554 78999999998766543322 3467899999999998877666655433 56666666665
Q ss_pred cccccC-----------cccc--cCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCccc-CCCCCCCCC
Q 037314 266 AISQVP-----------PSIA--CLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITEL-PESLGRSPS 330 (566)
Q Consensus 266 ~l~~l~-----------~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~ 330 (566)
...... ..+. ..++|+.|++++|..... .+. +..+++|++|++++|.+.++ |..++.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-----LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcccccc-----chhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 433110 0111 124666777766653321 122 55666677777777776664 456666677
Q ss_pred CCEEeccCCCCeec-CcchhcCCCCcEecccccccCCcCC----CCCCCCeEeecCCcCcccccCcchhcccccccceee
Q 037314 331 LNYLNLAENDFEKI-PSSIKQLSKLLFLTLRNCKRLQSLP----ELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAF 405 (566)
Q Consensus 331 L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l 405 (566)
|++|+|++|.++.+ |..+..+++|++|++++|+.....| .++.++.|++.++ .++.++.. .....+.++.+
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L 400 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG---IFDRLTSLQKI 400 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT---TTTTCTTCCEE
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHh---HhccCCcccEE
Confidence 77777777776655 3456666777777777665332222 3455566666664 34444321 01233456666
Q ss_pred EeeCCC
Q 037314 406 DFCNCF 411 (566)
Q Consensus 406 ~~~~C~ 411 (566)
++.+++
T Consensus 401 ~l~~N~ 406 (455)
T 3v47_A 401 WLHTNP 406 (455)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 665543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=275.70 Aligned_cols=369 Identities=15% Similarity=0.116 Sum_probs=256.1
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccc-cccCCCCCC
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAA 94 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~ 94 (566)
...+.++++++ ....+|.++ |++|+.|++++|.++.++. .| .+++|++|++++|+++.+ |..+..+++
T Consensus 31 ~~~~~l~ls~~------~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 31 ELESMVDYSNR------NLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp --CCEEECTTS------CCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCCcEEEcCCC------CCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 34467777762 223466544 4689999999999999884 44 889999999999999987 567899999
Q ss_pred CcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCcc-ccchhhhhcccCcEEecCCCCCCCccCCcCCCCCc--cEEEec
Q 037314 95 LKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLI-ETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSL--KVLYLG 171 (566)
Q Consensus 95 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L~ 171 (566)
|++|+|++|.+. .+|.. .+++|++|++++|.... .+|..++++++|++|++++| .++... ...+++| ++|+++
T Consensus 102 L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~-~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD-LLPVAHLHLSCILLD 177 (562)
T ss_dssp CCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT-TGGGTTSCEEEEEEE
T ss_pred CCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc-hhhhhhceeeEEEee
Confidence 999999999865 56655 89999999999998766 35688999999999999985 444321 1145555 999999
Q ss_pred CCCC--CCcCCcccCC-----------------------------CCEEecCCCCC------------------------
Q 037314 172 GCSN--LKRFPEISCN-----------------------------IEHLDLKETAI------------------------ 196 (566)
Q Consensus 172 ~~~~--l~~~~~~~~~-----------------------------L~~L~L~~~~i------------------------ 196 (566)
+|.. ....|..+.+ |+.+++++|..
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9876 4444433332 22333333210
Q ss_pred ---------cccCccccCCCCCcEEeccCCCCcccccccc-----cCC--------------------------CCCcEE
Q 037314 197 ---------EELPSSIGNLSRLVHLDLTNCSRLKSVSSSL-----CNL--------------------------KSLVNL 236 (566)
Q Consensus 197 ---------~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l-----~~l--------------------------~~L~~L 236 (566)
..++..+ ..++|++|++++|...+.+|..+ .++ .+|++|
T Consensus 258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 0000000 11245555555554444444433 222 235555
Q ss_pred eccCCcCCcccccccCCCCccceeccCCccccc-cCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecc
Q 037314 237 YLSGCLKLEKLPEEIGNLESLEVMLANETAISQ-VPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLV 314 (566)
Q Consensus 237 ~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~ 314 (566)
++++|...... ....+++|+.|++++|.++. +|..+..+++|+.|++++|....- ..+|. +..+++|++|+++
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF---FKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT---THHHHTTTTCTTCCEEECT
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc---ccchhhhcCCCCCCEEECC
Confidence 55555432211 12678999999999999996 678899999999999999975421 01222 7789999999999
Q ss_pred cCCCcc-cCCC-CCCCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCCC----CCCCCeEeecCCcCccc
Q 037314 315 DCGITE-LPES-LGRSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLPE----LPCGSTIFARHCTSLET 387 (566)
Q Consensus 315 ~~~l~~-lp~~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~L~~~~c~~L~~ 387 (566)
+|.+.. +|.. +..+++|++|++++|.++ .+|..+. ++|++|++++|+ ++.+|. ++.++.|++.++ .++.
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCC
Confidence 999998 8854 788999999999999986 4454433 799999999995 778874 677799999886 4666
Q ss_pred ccCcchhcccccccceeeEeeCCCC
Q 037314 388 LSSLSTLFTRSSELWQAFDFCNCFK 412 (566)
Q Consensus 388 l~~~~~~~~~~~~~l~~l~~~~C~~ 412 (566)
++.. .....+.++.+++.+++-
T Consensus 488 l~~~---~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 488 VPDG---VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCTT---STTTCTTCCCEECCSCCB
T ss_pred CCHH---HHhcCCCCCEEEecCCCc
Confidence 6643 113456677788766553
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=270.23 Aligned_cols=291 Identities=20% Similarity=0.214 Sum_probs=182.6
Q ss_pred CccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEE
Q 037314 47 FNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLD 122 (566)
Q Consensus 47 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 122 (566)
|.+++.|++++|.++.++. .| .+++|++|++++|+++.+ +..+.++++|++|+|++|.+....+. |.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3455555555555554432 22 455555555555555544 34455555555555555543322222 44555555555
Q ss_pred eeCCCCccccchhhhhcccCcEEecCCCCCCCccC-CcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccC
Q 037314 123 LVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLP-TGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 123 L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp 200 (566)
|++|......+..+..+++|++|++++| .+..++ ..+ .++ +|++|++++|.+..+|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLN---------------------SLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCT---------------------TCCEEEEESCCCSSCC
T ss_pred CCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCC---------------------CCCEEECCCCcCcccC
Confidence 5555544444444555555555555542 222222 122 344 4555555555566555
Q ss_pred c-cccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCC
Q 037314 201 S-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLN 278 (566)
Q Consensus 201 ~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~ 278 (566)
. .+..+++|+.|++++|......+..+..+++|++|++++|...+.+|.......+|+.|++++|.++.+|. .+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 4 36677777777777776666666667777777777777777777777666666677888888877777764 567778
Q ss_pred CCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcE
Q 037314 279 RVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLF 356 (566)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~ 356 (566)
+|+.|++++|.... .....+..+++|++|+|++|++..+ |..+..+++|+.|+|++|.++.+|.. +..+++|++
T Consensus 249 ~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 249 YLRFLNLSYNPIST----IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TCCEEECCSSCCCE----ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred ccCeeECCCCcCCc----cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 88888888776432 1112266788888889988888885 67788889999999999998888764 578888999
Q ss_pred ecccccc
Q 037314 357 LTLRNCK 363 (566)
Q Consensus 357 L~L~~c~ 363 (566)
|++++|+
T Consensus 325 L~l~~N~ 331 (477)
T 2id5_A 325 LILDSNP 331 (477)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9998887
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.1e-29 Score=255.21 Aligned_cols=307 Identities=18% Similarity=0.218 Sum_probs=255.2
Q ss_pred HHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCC
Q 037314 12 NTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQN 91 (566)
Q Consensus 12 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~ 91 (566)
..+..+++|+.|++.++ ....++ ++..++ +|++|++++|.++.+|....+++|++|++++|+++.++ .+..
T Consensus 38 ~~~~~l~~L~~L~l~~~------~i~~~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 38 VTQEELESITKLVVAGE------KVASIQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp ECHHHHTTCSEEECCSS------CCCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred ccchhcccccEEEEeCC------ccccch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcC
Confidence 35678999999999983 122344 477775 89999999999999998559999999999999999885 6899
Q ss_pred CCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEec
Q 037314 92 LAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLG 171 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~ 171 (566)
+++|++|++++|.+. .++.+..+++|++|++++|.....++. +..+++|++|++++| .+..++....+++|++|+++
T Consensus 109 l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 109 LTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp CTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECT
T ss_pred CCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEcc
Confidence 999999999999854 555699999999999999977766554 899999999999995 46666654489999999999
Q ss_pred CCCCCCcCC--cccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccc
Q 037314 172 GCSNLKRFP--EISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPE 249 (566)
Q Consensus 172 ~~~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~ 249 (566)
+|... .++ ....+|+.|++++|.+..++. +..+++|++|++++|......+ +..+++|++|++++|.... + .
T Consensus 186 ~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~ 259 (347)
T 4fmz_A 186 YNQIE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-N 259 (347)
T ss_dssp TSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-G
T ss_pred CCccc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-h
Confidence 98643 343 345689999999999998877 8899999999999987655433 8899999999999986654 3 4
Q ss_pred ccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCC
Q 037314 250 EIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSP 329 (566)
Q Consensus 250 ~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~ 329 (566)
.+..+++|+.|++++|.++.++ .+..+++|+.|++++|..... ....+..+++|++|++++|.+++++. +..++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~ 333 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNHITDIRP-LASLS 333 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCT
T ss_pred hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCccccccC-hhhhh
Confidence 6889999999999999999884 588999999999999985431 12237889999999999999999766 88899
Q ss_pred CCCEEeccCCCCe
Q 037314 330 SLNYLNLAENDFE 342 (566)
Q Consensus 330 ~L~~L~Ls~n~l~ 342 (566)
+|++|++++|.++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999876
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.8e-29 Score=259.05 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=74.4
Q ss_pred cceEEEeCCccCCCCCCCC--CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEee
Q 037314 49 ELRYFYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLV 124 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 124 (566)
++++|++.++.++.+|..+ .+++|++|++++|+++.++. .+..+++|++|+|++|.+....|+ ++.+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 5556666666555555542 45556666666666555543 455556666666666554444443 5555566666666
Q ss_pred CCCCccccchhhhhcccCcEEecCCCCCCCccCCc-C-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCc
Q 037314 125 GCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIE 197 (566)
Q Consensus 125 ~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~ 197 (566)
+|......+..++.+++|++|++++| .++.++.. + .+++|++|++++|.....-...+.+|++|++++|.+.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 55443222222455556666666553 23333322 2 4555555555554432222233334444444444443
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=255.69 Aligned_cols=304 Identities=17% Similarity=0.136 Sum_probs=231.9
Q ss_pred cCcCCcEEEEeecCCCCccceEEcCCC-ccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCcccc-ccCCC
Q 037314 16 KMHRLRFFKFYNIFAGVNKYKVRHSRY-LESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLW-NGVQN 91 (566)
Q Consensus 16 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~-~~~~~ 91 (566)
.+.+||.|++.++ ....+|.. +..++ +|++|++++|.++.++. .+ .+++|++|++++|+++.++ ..+..
T Consensus 43 ~l~~l~~l~l~~~------~l~~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNS------TMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESC------EESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCC------chhhCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 4689999999982 34456655 56675 89999999999998886 44 8999999999999999875 45799
Q ss_pred CCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEe
Q 037314 92 LAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYL 170 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 170 (566)
+++|++|++++|.+....+. ++.+++|++|++++|......+..++.+++|++|++++| .++.++. ..+++|+.|++
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~L~~L~l 193 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV 193 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCG-GGCTTCSEEEC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCcccc-ccccccceeec
Confidence 99999999999986644444 689999999999999887777788999999999999994 5666542 36899999999
Q ss_pred cCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccc
Q 037314 171 GGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEE 250 (566)
Q Consensus 171 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~ 250 (566)
++|.. ..++ ...++++|++++|.+..+|... .++|+.|++++|..... ..+..+++|++|++++|...+..|..
T Consensus 194 ~~n~l-~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 194 SYNLL-STLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSSCC-SEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccccc-cccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 99753 3322 3348999999999999887644 57899999999876553 46788999999999998887777888
Q ss_pred cCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCCCCCCCC
Q 037314 251 IGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPESLGRSP 329 (566)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~ 329 (566)
+..+++|+.|++++|.++.+|..+..+++|++|++++|.... +|. +..+++|++|++++|.++.++ +..++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~ 339 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH------VERNQPQFDRLENLYLDHNSIVTLK--LSTHH 339 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTC
T ss_pred ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee------cCccccccCcCCEEECCCCccceeC--chhhc
Confidence 888999999999998888877666666666666666665321 222 444555555555555555553 44455
Q ss_pred CCCEEeccCCCCe
Q 037314 330 SLNYLNLAENDFE 342 (566)
Q Consensus 330 ~L~~L~Ls~n~l~ 342 (566)
+|+.|++++|++.
T Consensus 340 ~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 340 TLKNLTLSHNDWD 352 (390)
T ss_dssp CCSEEECCSSCEE
T ss_pred cCCEEEcCCCCcc
Confidence 5555555555544
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3e-28 Score=257.78 Aligned_cols=304 Identities=16% Similarity=0.114 Sum_probs=181.1
Q ss_pred HHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCC
Q 037314 12 NTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQN 91 (566)
Q Consensus 12 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~ 91 (566)
.++.++++|+.|+++++ ... .+| ++..++ +|++|++++|.++.+| ...+++|++|++++|+++.++ +..
T Consensus 36 ~~~~~l~~L~~L~Ls~n-----~l~-~~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-----SIT-DMT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EEHHHHTTCCEEECCSS-----CCC-CCT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cChhHcCCCCEEEccCC-----Ccc-cCh-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCC
Confidence 35667788888888773 111 234 566664 7888888888877776 336778888888888877764 677
Q ss_pred CCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEec
Q 037314 92 LAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLG 171 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~ 171 (566)
+++|++|++++|.+.. +| ++.+++|++|++++|...+ + .++.+++|++|++++|..++.++ ...+++|++|+++
T Consensus 105 l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECC
Confidence 7888888888776443 44 7777788888888776554 2 26777778888887776666663 2367777777777
Q ss_pred CCCCCCcCC-cccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccc
Q 037314 172 GCSNLKRFP-EISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEE 250 (566)
Q Consensus 172 ~~~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~ 250 (566)
+|.... +| ....+|++|++++|.++.++ ++.+++|++|++++|...+ +| +..+++|++|++++|...+..
T Consensus 179 ~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 179 FNKITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp SSCCCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred CCccce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence 765333 33 23346777777777777763 6677777777777766554 45 667777777777776655432
Q ss_pred cCCCCccceeccCCccccccCc---------ccccCCCCCEEEccCCCCCCCCCC----CCcccccCCCCCcEEecccCC
Q 037314 251 IGNLESLEVMLANETAISQVPP---------SIACLNRVESLSFDRCKGRPPLMS----LKLPILFQLQNLEYLSLVDCG 317 (566)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~l~~---------~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~l~~L~~L~L~~~~ 317 (566)
++.+++|+.|+++.+.++.+.- .+..+++|+.|++++|.....++. ...-.+.++++|++|++++|+
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 2334444444443333221100 123455566666665553322110 000013334445555555555
Q ss_pred CcccCCCCCCCCCCCEEeccCCCCee
Q 037314 318 ITELPESLGRSPSLNYLNLAENDFEK 343 (566)
Q Consensus 318 l~~lp~~l~~l~~L~~L~Ls~n~l~~ 343 (566)
++.++ ++.+++|+.|++++|+++.
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred ccccc--cccCCcCcEEECCCCCCCC
Confidence 44442 4444455555555554443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=262.62 Aligned_cols=294 Identities=20% Similarity=0.219 Sum_probs=241.6
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCC-CCCC-CCCCeEEEEcCCCCCcccccc-CCCCCC
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQLWNG-VQNLAA 94 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~l~~~-~~~l~~ 94 (566)
.+|+.|++++ +......+..+..++ +|++|++++|.++.+ |..| .+++|++|++++|+++.++.. +..+++
T Consensus 32 ~~l~~L~L~~-----n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGK-----NRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCS-----SCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCC-----CccceECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 5899999998 455566677888886 899999999999988 4555 899999999999999999865 689999
Q ss_pred CcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEec
Q 037314 95 LKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLG 171 (566)
Q Consensus 95 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~ 171 (566)
|++|+|++|.+....+. +..+++|++|++++|......+..+..+++|+.|++++| .++.+|... .+++|+.|+++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCC
Confidence 99999999998776664 899999999999999888888888999999999999995 566666532 67777777777
Q ss_pred CCCCCCcCCcccCCCCEEecCCCCCcccC-ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccc
Q 037314 172 GCSNLKRFPEISCNIEHLDLKETAIEELP-SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEE 250 (566)
Q Consensus 172 ~~~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~ 250 (566)
+|. +..++ ..+..+++|++|++++|...+.+|..+....+|++|++++|...+..+..
T Consensus 185 ~n~---------------------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 185 HLN---------------------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp SCC---------------------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CCc---------------------CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 653 33333 34778889999999998888888877777779999999998765444467
Q ss_pred cCCCCccceeccCCccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCCCC
Q 037314 251 IGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLGRS 328 (566)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l 328 (566)
+..+++|+.|++++|.++.++. .+..+++|+.|++++|.... .....+..+++|+.|+|++|.++.++. .+..+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV----VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE----ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce----ECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 8889999999999999987754 67889999999999987433 112237789999999999999999875 56889
Q ss_pred CCCCEEeccCCCCee
Q 037314 329 PSLNYLNLAENDFEK 343 (566)
Q Consensus 329 ~~L~~L~Ls~n~l~~ 343 (566)
++|+.|+|++|.+..
T Consensus 320 ~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 320 GNLETLILDSNPLAC 334 (477)
T ss_dssp GGCCEEECCSSCEEC
T ss_pred cccCEEEccCCCccC
Confidence 999999999999873
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.5e-28 Score=256.49 Aligned_cols=305 Identities=16% Similarity=0.137 Sum_probs=246.7
Q ss_pred CccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEE
Q 037314 42 YLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERL 121 (566)
Q Consensus 42 ~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 121 (566)
.+..++ +|++|+++++.++.+|....+++|++|++++|+++.++ +..+++|++|++++|.+.. ++ ++.+++|++|
T Consensus 37 ~~~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYL 111 (457)
T ss_dssp EHHHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEE
T ss_pred ChhHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEE
Confidence 344554 89999999999999985458999999999999999985 8899999999999998554 44 8999999999
Q ss_pred EeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCC-cccCCCCEEecCCCCCcccC
Q 037314 122 DLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFP-EISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 122 ~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~-~~~~~L~~L~L~~~~i~~lp 200 (566)
++++|...+ ++ ++.+++|++|++++| .++.++ ...+++|++|++++|..++.++ ....+|++|++++|.++.+|
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 999997665 44 899999999999994 566665 3389999999999997777664 34568999999999999998
Q ss_pred ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCC
Q 037314 201 SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRV 280 (566)
Q Consensus 201 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L 280 (566)
++.+++|+.|++++|...+. .+..+++|++|++++|...+ +| +..+++|+.|++++|.++.+| +..+++|
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L 256 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKL 256 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred --cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCC
Confidence 88999999999999876654 38899999999999987766 66 889999999999999999876 4556666
Q ss_pred CEEEccCCCCCCC-CC----CCCcccccCCCCCcEEecccCCCcc-cCC--------CCCCCCCCCEEeccCCCCeecCc
Q 037314 281 ESLSFDRCKGRPP-LM----SLKLPILFQLQNLEYLSLVDCGITE-LPE--------SLGRSPSLNYLNLAENDFEKIPS 346 (566)
Q Consensus 281 ~~L~l~~~~~~~~-~~----~~~l~~~~~l~~L~~L~L~~~~l~~-lp~--------~l~~l~~L~~L~Ls~n~l~~lp~ 346 (566)
+.|+++++....- +. ...+| ...+++|+.|++++|...+ +|. .+..+++|++|++++|+++.++
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~- 334 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD- 334 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-
T ss_pred CEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-
Confidence 6666655542110 00 01122 5678999999999997544 332 3677789999999999999885
Q ss_pred chhcCCCCcEecccccccCCcCCC
Q 037314 347 SIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 347 ~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
+..+++|+.|++++|+ ++.++.
T Consensus 335 -l~~l~~L~~L~l~~N~-l~~l~~ 356 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAH-IQDFSS 356 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CCBCTT
T ss_pred -cccCCcCcEEECCCCC-CCCccc
Confidence 8899999999999987 444443
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.7e-29 Score=273.36 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=51.1
Q ss_pred CCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCC
Q 037314 41 RYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAF 116 (566)
Q Consensus 41 ~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~ 116 (566)
..|..++ +|++|++++|.++.+|.. | .+++|++|+|++|+|+.++. .+.++++|++|+|++|.+....+. |+.++
T Consensus 70 ~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 70 YSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 3444443 455555555555554432 2 44555555555555554443 244555555555555543332222 44555
Q ss_pred CccEEEeeCCCCcc-ccchhhhhcccCcEEecCC
Q 037314 117 NIERLDLVGCASLI-ETHSSIQHLNKLVFLNLGH 149 (566)
Q Consensus 117 ~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~ 149 (566)
+|++|++++|.... ..|..++.+++|++|++++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 55555555544332 2344444555555555544
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.8e-27 Score=251.63 Aligned_cols=316 Identities=21% Similarity=0.209 Sum_probs=225.4
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcE
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 97 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 97 (566)
++|+.|+++++ ... .+|.. +.+|++|++++|.++.+|.. +++|++|++++|+++.+| .+..+++|++
T Consensus 91 ~~L~~L~l~~n-----~l~-~lp~~----~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCN-----SLT-ELPEL----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSS-----CCS-SCCCC----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEEccCC-----cCC-ccccc----cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 46777777662 111 14432 35788888888888887753 379999999999999998 6999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCC
Q 037314 98 LNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLK 177 (566)
Q Consensus 98 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~ 177 (566)
|++++|.+. .+|+. .++|++|++++|...+ +| .++.+++|++|++++| .++.+|.. .++|++|++++|.. .
T Consensus 158 L~l~~N~l~-~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N-~l~~l~~~--~~~L~~L~l~~n~l-~ 228 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN-SLKKLPDL--PLSLESIVAGNNIL-E 228 (454)
T ss_dssp EECCSSCCS-CCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS-CCSSCCCC--CTTCCEEECCSSCC-S
T ss_pred EECCCCcCc-ccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC-cCCcCCCC--cCcccEEECcCCcC-C
Confidence 999999855 46653 3699999999997665 56 6899999999999995 56667764 36999999999854 4
Q ss_pred cCCc--ccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCC
Q 037314 178 RFPE--ISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLE 255 (566)
Q Consensus 178 ~~~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~ 255 (566)
.+|+ ...+|++|++++|.+..+|.. +++|++|++++|...+ +|.. +++|++|++++|...+ +|.. .+
T Consensus 229 ~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~ 297 (454)
T 1jl5_A 229 ELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PP 297 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CT
T ss_pred cccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CC
Confidence 7775 234799999999999999874 4899999999987554 6653 4789999999987554 3321 26
Q ss_pred ccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEe
Q 037314 256 SLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLN 335 (566)
Q Consensus 256 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 335 (566)
+|+.|++++|.++.++.. .++|++|++++|.... +|. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 298 ~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~------lp~--~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE------LPA--LPPRLERLIASFNHLAEVPE---LPQNLKQLH 363 (454)
T ss_dssp TCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC------CCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred cCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc------ccc--cCCcCCEEECCCCccccccc---hhhhccEEE
Confidence 899999999999876632 2589999999997543 332 25899999999999999988 578999999
Q ss_pred ccCCCCee---cCcchhcC-------------CCCcEecccccccCCcCCCCCCC-CeEeecC
Q 037314 336 LAENDFEK---IPSSIKQL-------------SKLLFLTLRNCKRLQSLPELPCG-STIFARH 381 (566)
Q Consensus 336 Ls~n~l~~---lp~~i~~l-------------~~L~~L~L~~c~~L~~lp~lp~~-~~L~~~~ 381 (566)
+++|.++. +|.++..+ ++|+.|++++|+ ++.+|.+|.. +.|.+.+
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L~~~~ 425 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDLRMNS 425 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhheeCcC
Confidence 99999876 66777766 778888888876 4445555544 4444433
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-28 Score=266.76 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=142.5
Q ss_pred cceEEEeCCccCCCCCCCC--CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEee
Q 037314 49 ELRYFYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLV 124 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 124 (566)
.++.|++.++.+..+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. |+.+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 4555555555555555443 45555666665555555443 455555566666655554444443 4555556666665
Q ss_pred CCCCccccchhhhhcccCcEEecCCCCCCCccCC-cC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCcc
Q 037314 125 GCASLIETHSSIQHLNKLVFLNLGHCISLKSLPT-GI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSS 202 (566)
Q Consensus 125 ~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~ 202 (566)
+|......+..++.+++|++|++++|. +..++. .+ .+++|++|++++|.....-+..+.+|++|++++|.+..++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-- 208 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-- 208 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE--
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc--
Confidence 554433222334555555666555532 333322 22 4555555555555433322233445555555555544332
Q ss_pred ccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCC
Q 037314 203 IGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVE 281 (566)
Q Consensus 203 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~ 281 (566)
..++|+.|++++|.... ++..+ .++|+.|++++|...+ +..+..+++|+.|++++|.+..+ |..+..+++|+
T Consensus 209 --~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 209 --IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp --CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred --CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 23345555555543322 22111 1345555555544333 23444455555555555555433 33444444444
Q ss_pred EEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEeccc
Q 037314 282 SLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLR 360 (566)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 360 (566)
.|++++|.... +|. +..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+| +..+++|+.|+++
T Consensus 282 ~L~Ls~N~l~~------l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 282 RLYISNNRLVA------LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp EEECTTSCCCE------EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECC
T ss_pred EEECCCCCCCC------CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEee
Confidence 44444443221 111 23344555555555555555544444555555555555554443 3444555555555
Q ss_pred ccc
Q 037314 361 NCK 363 (566)
Q Consensus 361 ~c~ 363 (566)
+|+
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.3e-28 Score=263.55 Aligned_cols=304 Identities=17% Similarity=0.134 Sum_probs=258.0
Q ss_pred cCcCCcEEEEeecCCCCccceEEcCCC-ccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccccc-cCCC
Q 037314 16 KMHRLRFFKFYNIFAGVNKYKVRHSRY-LESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWN-GVQN 91 (566)
Q Consensus 16 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~-~~~~ 91 (566)
.+.+++.|+++++ ....+|.. +..++ +|++|++++|.++.++. .| .+++|++|+|++|.++.++. .+..
T Consensus 49 ~l~~l~~l~l~~~------~l~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNS------TMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSC------EESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCC------CCCCcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 4678999999872 33445654 55665 89999999999998885 44 89999999999999998865 4699
Q ss_pred CCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEe
Q 037314 92 LAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYL 170 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 170 (566)
+++|++|+|++|.+....+. |+.+++|++|+|++|...+..|..++.+++|++|++++| .++.++. ..+++|+.|++
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~l 199 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV 199 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCG-GGCTTCSEEEC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcCh-hhhhhhhhhhc
Confidence 99999999999987655555 689999999999999888888888999999999999995 5666652 36899999999
Q ss_pred cCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccc
Q 037314 171 GGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEE 250 (566)
Q Consensus 171 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~ 250 (566)
++|.. ..++ ...+|++|++++|.+..+|..+ .++|+.|++++|...+ +..+..+++|++|++++|...+..|..
T Consensus 200 ~~n~l-~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 200 SYNLL-STLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSSCC-SEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccCcc-cccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 99754 3322 3358999999999999888755 3789999999987765 367889999999999999988888999
Q ss_pred cCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCCCCCCCC
Q 037314 251 IGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPESLGRSP 329 (566)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~ 329 (566)
+..+++|+.|++++|.++.+|..+..+++|+.|++++|.... +|. +..+++|+.|++++|.+..++ +..++
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~ 345 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH------VERNQPQFDRLENLYLDHNSIVTLK--LSTHH 345 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTC
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc------cCcccccCCCCCEEECCCCCCCCcC--hhhcC
Confidence 999999999999999999999888889999999999998653 443 778899999999999999886 77889
Q ss_pred CCCEEeccCCCCe
Q 037314 330 SLNYLNLAENDFE 342 (566)
Q Consensus 330 ~L~~L~Ls~n~l~ 342 (566)
+|+.|+|++|++.
T Consensus 346 ~L~~L~l~~N~~~ 358 (597)
T 3oja_B 346 TLKNLTLSHNDWD 358 (597)
T ss_dssp CCSEEECCSSCEE
T ss_pred CCCEEEeeCCCCC
Confidence 9999999999986
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.9e-26 Score=232.44 Aligned_cols=280 Identities=20% Similarity=0.221 Sum_probs=171.5
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
+++.++++++.++.+|..+ +++|+.|++++|+++.++. .+..+++|++|+|++|.+....|+ ++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 6788888888888888655 3678888888888887765 577888888888888876655454 777888888888877
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCC--cCCc---ccCCCCEEecCCCCCccc
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLK--RFPE---ISCNIEHLDLKETAIEEL 199 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~--~~~~---~~~~L~~L~L~~~~i~~l 199 (566)
... .+|..+. ++|++|++++| .++.++... .+++|++|++++|.... ..+. ...+|++|++++|.+..+
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cCC-ccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 643 4554443 67777777773 455555432 67777777777765421 1121 123555555555555555
Q ss_pred CccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCC
Q 037314 200 PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNR 279 (566)
Q Consensus 200 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~ 279 (566)
|..+. ++|++|++++|...+..|..+..+++|++|++++|...+..+..+..+++|+.|++++|.++.+|..
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~------ 258 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG------ 258 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT------
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh------
Confidence 55433 4555555555554444444555555555555555544443334444445555555555544444443
Q ss_pred CCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCC------CCCCCCEEeccCCCCee--c-Ccchh
Q 037314 280 VESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLG------RSPSLNYLNLAENDFEK--I-PSSIK 349 (566)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~------~l~~L~~L~Ls~n~l~~--l-p~~i~ 349 (566)
+..+++|++|++++|.++.++. .+. ..+.|+.|++++|.+.. + |..+.
T Consensus 259 ----------------------l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 259 ----------------------LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp ----------------------TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred ----------------------hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 4455666666666666666542 222 24678889999988762 3 45678
Q ss_pred cCCCCcEecccccc
Q 037314 350 QLSKLLFLTLRNCK 363 (566)
Q Consensus 350 ~l~~L~~L~L~~c~ 363 (566)
.+.+|+.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 88889999988874
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.4e-26 Score=232.22 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=156.2
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
+++.++++++.++.+|..+ +++|++|++++|+++.++ ..+..+++|++|++++|.+....|+ ++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5777777777777777655 357777777777777664 4577777777777777765554443 677777777777776
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCC--cCCcccC--CCCEEecCCCCCcccC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLK--RFPEISC--NIEHLDLKETAIEELP 200 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~--~~~~~~~--~L~~L~L~~~~i~~lp 200 (566)
... .+|..+. ++|++|++++ +.++.+|... .+++|++|++++|.... ..+..+. +|++|++++|.+..+|
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cCC-ccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 543 4444443 6677777766 3455555432 56666666666654321 2222211 4555555555555555
Q ss_pred ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCC
Q 037314 201 SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNR 279 (566)
Q Consensus 201 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~ 279 (566)
..+. ++|++|++++|...+.. +..+..+++|+.|++++|.++.++. .+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~------------------------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIE------------------------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCC------------------------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCccC------------------------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 4332 34444444444433333 3344444444444444444443332 3444444
Q ss_pred CCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCC-CCCC------CCCCCEEeccCCCCe--ec-Ccch
Q 037314 280 VESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPE-SLGR------SPSLNYLNLAENDFE--KI-PSSI 348 (566)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~-~l~~------l~~L~~L~Ls~n~l~--~l-p~~i 348 (566)
|+.|++++|.... +|. +..+++|++|++++|.++.++. .+.. .++|+.|++++|.+. .+ |..+
T Consensus 243 L~~L~L~~N~l~~------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 243 LRELHLDNNKLSR------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp CCEEECCSSCCCB------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCEEECCCCcCee------cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 4444444443221 222 4455666666666666666542 2222 356788888888765 33 4557
Q ss_pred hcCCCCcEecccccc
Q 037314 349 KQLSKLLFLTLRNCK 363 (566)
Q Consensus 349 ~~l~~L~~L~L~~c~ 363 (566)
..+++|+.|++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 778888888888775
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.4e-26 Score=233.37 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=218.2
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccc-cccCCCCCC
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAA 94 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~ 94 (566)
.+|+.++++++ ....+|..+ +++|++|++++|.++.++. .+ .+++|++|++++|+++.+ +..+..+++
T Consensus 33 c~l~~l~~~~~------~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDL------GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSS------CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred ccCCEEECCCC------CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 47888888772 223456544 4689999999999998875 44 899999999999999987 778999999
Q ss_pred CcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCC--CccCCcCCCCCccEEEec
Q 037314 95 LKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISL--KSLPTGINLDSLKVLYLG 171 (566)
Q Consensus 95 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l--~~lp~~~~l~~L~~L~L~ 171 (566)
|++|++++|.+. .+|. +. ++|++|++++|......+..+..+++|++|++++|... ...|..+...+|++|+++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 999999999865 5554 43 89999999999877666667999999999999996442 134444432399999999
Q ss_pred CCCCCCcCCc-ccCCCCEEecCCCCCcccC-ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccc
Q 037314 172 GCSNLKRFPE-ISCNIEHLDLKETAIEELP-SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPE 249 (566)
Q Consensus 172 ~~~~l~~~~~-~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~ 249 (566)
+|... .+|. ...+|++|++++|.+..++ ..+..+++|++|++++|...+..+..+..+++|++|++++|... .+|.
T Consensus 181 ~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 181 EAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp SSBCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CCCCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 98744 4554 4468999999999999887 57899999999999998877777778888899999999987554 7777
Q ss_pred ccCCCCccceeccCCccccccCcc-cccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCc--c-cCCCC
Q 037314 250 EIGNLESLEVMLANETAISQVPPS-IACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGIT--E-LPESL 325 (566)
Q Consensus 250 ~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~--~-lp~~l 325 (566)
.+..+++|+.|++++|.++.++.. +... ........|+.|++++|.+. + .|..+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPV----------------------GFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCS----------------------SCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred hhhcCccCCEEECCCCCCCccChhHcccc----------------------ccccccccccceEeecCcccccccCcccc
Confidence 788888888888888888876542 2111 00112356777777777776 3 34567
Q ss_pred CCCCCCCEEeccCCC
Q 037314 326 GRSPSLNYLNLAEND 340 (566)
Q Consensus 326 ~~l~~L~~L~Ls~n~ 340 (566)
..+++|+.|++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 778888888888774
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.3e-25 Score=227.71 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=203.1
Q ss_pred CeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCC
Q 037314 71 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGH 149 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~ 149 (566)
+++.++++++.++.+|..+. ++|++|++++|.+....+ .++.+++|++|++++|......|..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 78899999999999987664 689999999998766555 488999999999999887777788899999999999988
Q ss_pred CCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc-cccCCCCCcEEeccCCCCcc--ccccc
Q 037314 150 CISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLK--SVSSS 226 (566)
Q Consensus 150 c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~--~lp~~ 226 (566)
+.++.+|..+. + +|++|++++|.+..++. .+..+++|++|++++|.... ..+..
T Consensus 110 -n~l~~l~~~~~-~---------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 110 -NQLKELPEKMP-K---------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp -SCCSBCCSSCC-T---------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred -CcCCccChhhc-c---------------------cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 45667765432 3 45555555556665554 36778888888888876643 55667
Q ss_pred ccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCCCCCCCCCCCCcccccCC
Q 037314 227 LCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQL 305 (566)
Q Consensus 227 l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l 305 (566)
+.++++|++|++++|... .+|..+. ++|+.|++++|.++.+ +..+..+++|+.|++++|..... ....+..+
T Consensus 167 ~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l 239 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV----DNGSLANT 239 (330)
T ss_dssp GGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE----CTTTGGGS
T ss_pred ccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee----ChhhccCC
Confidence 778888888888887543 4555443 7888888888888866 55788888888888888874321 11237788
Q ss_pred CCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcc-hh------cCCCCcEeccccccc
Q 037314 306 QNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSS-IK------QLSKLLFLTLRNCKR 364 (566)
Q Consensus 306 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~------~l~~L~~L~L~~c~~ 364 (566)
++|++|++++|.+..+|..+..+++|++|++++|.++.+|.. +. ..+.|+.|++++|+.
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 999999999999999999999999999999999999988754 32 347899999999984
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-26 Score=233.42 Aligned_cols=249 Identities=20% Similarity=0.233 Sum_probs=175.5
Q ss_pred CCeEEEEcCCCCCc---cccccCCCCCCCcEEecCC-CCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcE
Q 037314 70 EHLVSLEMPHSNIE---QLWNGVQNLAALKRLNLSY-SKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVF 144 (566)
Q Consensus 70 ~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~ 144 (566)
.++++|++++++++ .+|..+..+++|++|++++ |.+...+|. ++.+++|++|++++|...+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999999888 4788888899999999984 776666664 888888888888888877788888888888888
Q ss_pred EecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCc-ccCccccCCC-CCcEEeccCCCCcc
Q 037314 145 LNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIE-ELPSSIGNLS-RLVHLDLTNCSRLK 221 (566)
Q Consensus 145 L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~-~L~~L~L~~~~~l~ 221 (566)
|++++|.....+|..+ .+++|++|++++| .+. .+|..+..++ +|++|++++|...+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N---------------------~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN---------------------RISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS---------------------CCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC---------------------cccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 8888854333555444 4444444444443 333 3455555555 66666666665555
Q ss_pred cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc
Q 037314 222 SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 222 ~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
.+|..+..++ |++|++++|...+..|..+..+++|+.|++++|.++.. .+.
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------------~~~ 239 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----------------------------LGK 239 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----------------------------GGG
T ss_pred cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----------------------------cCc
Confidence 5565555555 66666666655555555555555555555555555432 223
Q ss_pred ccCCCCCcEEecccCCCcc-cCCCCCCCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCC
Q 037314 302 LFQLQNLEYLSLVDCGITE-LPESLGRSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
+..+++|++|++++|.+++ +|..+..+++|++|+|++|.++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 4556788888888888884 7888899999999999999987 67765 889999999999998665544
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7.4e-25 Score=241.47 Aligned_cols=362 Identities=23% Similarity=0.247 Sum_probs=271.7
Q ss_pred ecCHHHHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccc
Q 037314 8 CLNPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 8 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l 85 (566)
.+.+.+|.++++||+|++++ +......++.|..++ +|++|++++|.++.+|.. | .+++|++|++++|+++.+
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~-----N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp EECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred CCCHHHHhCCCCCCEEECCC-----CcCCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 46778999999999999998 344454566788886 899999999999999964 4 899999999999999998
Q ss_pred cc-cCCCCCCCcEEecCCCCCCC-CCCC-CCCCCCccEEEeeCCCCccccchhhhhc-----------------------
Q 037314 86 WN-GVQNLAALKRLNLSYSKQLS-RIPD-ISLAFNIERLDLVGCASLIETHSSIQHL----------------------- 139 (566)
Q Consensus 86 ~~-~~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l----------------------- 139 (566)
+. .++++++|++|+|++|.+.. .+|. ++.+++|++|++++|...+..+..+..+
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 76 48999999999999998654 3454 7889999999999886544332222111
Q ss_pred --------------------------------------------------------------------------------
Q 037314 140 -------------------------------------------------------------------------------- 139 (566)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (566)
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence
Q ss_pred ----------------------------ccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCC-cccCCCCEEe
Q 037314 140 ----------------------------NKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFP-EISCNIEHLD 190 (566)
Q Consensus 140 ----------------------------~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~-~~~~~L~~L~ 190 (566)
..|+.|++.+| .+..++. ..+..|+.+++.++.....+. ....+++.|+
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC-EESSCCC-CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccc-cccCcCc-ccchhhhhcccccccCCCCcccccccccccch
Confidence 12233333332 2222222 257889999998876544333 2356899999
Q ss_pred cCCCCCcc---cCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccc-cccCCCCccceeccCCcc
Q 037314 191 LKETAIEE---LPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLP-EEIGNLESLEVMLANETA 266 (566)
Q Consensus 191 L~~~~i~~---lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p-~~l~~l~~L~~L~l~~n~ 266 (566)
++.|.+.. .+.....+.+|+.|++..+... ..+..+..+++|+.++++++......+ ..+..+++++.++++.|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 99998864 4556778889999999886544 455667889999999999887766554 467889999999999999
Q ss_pred cccc-CcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCee
Q 037314 267 ISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEK 343 (566)
Q Consensus 267 l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~ 343 (566)
+..+ +..+..++.|+.|++++|..... ..|. +..+++|++|+|++|+++++ |..++.+++|++|+|++|+++.
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQEN----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccchhhhhhhhhhcccccc----cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 9855 55677889999999999864321 1222 77889999999999999995 6778999999999999999998
Q ss_pred cCc-chhcCCCCcEecccccccCCcCCC----CC-CCCeEeecCC
Q 037314 344 IPS-SIKQLSKLLFLTLRNCKRLQSLPE----LP-CGSTIFARHC 382 (566)
Q Consensus 344 lp~-~i~~l~~L~~L~L~~c~~L~~lp~----lp-~~~~L~~~~c 382 (566)
++. .+..+++|++|+|++|+.....|+ +| .++.|++.+.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 864 588999999999999984444442 32 2355555543
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.8e-24 Score=234.36 Aligned_cols=256 Identities=20% Similarity=0.216 Sum_probs=166.7
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 127 (566)
..++.|+++++.++.+|..+. ++|++|++++|+++.+|. .+++|++|+|++|.+ ..+|. .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCCc
Confidence 357888888888888887654 788888888888888776 567888888888874 45555 67788888888875
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLS 207 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~ 207 (566)
... +|. .+++|+.|++++ +.++.+|.. +++|++|++++| .+..+|..+.+|+.|++++|.+..+| ..++
T Consensus 113 l~~-l~~---~l~~L~~L~L~~-N~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~ 181 (622)
T 3g06_A 113 LTH-LPA---LPSGLCKLWIFG-NQLTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPS 181 (622)
T ss_dssp CCC-CCC---CCTTCCEEECCS-SCCSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCT
T ss_pred CCC-CCC---CCCCcCEEECCC-CCCCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCC
Confidence 443 443 567788888887 456677763 478888888886 34556666777888888888888777 4467
Q ss_pred CCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccC
Q 037314 208 RLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDR 287 (566)
Q Consensus 208 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 287 (566)
+|+.|++++|... .+|. .+++|+.|++++|... .+|.. +++|+.|++++|.++.+| .
T Consensus 182 ~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~------------ 238 (622)
T 3g06_A 182 GLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---V------------ 238 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---C------------
T ss_pred CCcEEECCCCCCC-CCCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---C------------
Confidence 7777777776543 3443 2356666666665432 33322 345555666655555544 2
Q ss_pred CCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 288 CKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 288 ~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
.+++|+.|++++|+++.+|. .+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 239 ----------------~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 ----------------LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ----------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ----------------CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 23455555555555555554 3455555555555555555555555555555555555
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.2e-25 Score=221.51 Aligned_cols=217 Identities=24% Similarity=0.323 Sum_probs=153.1
Q ss_pred CCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEec
Q 037314 69 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNL 147 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L 147 (566)
..++++|++++++++.+|..+..+++|++|+|++|.+. .+|+ ++.+++|++|+|++|... .+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 46888888888888888888888888888888888866 5654 888888888888888765 77888888888888888
Q ss_pred CCCCCCCccCCcCC----------CCCccEEEecCCCCCCcCCccc---CCCCEEecCCCCCcccCccccCCCCCcEEec
Q 037314 148 GHCISLKSLPTGIN----------LDSLKVLYLGGCSNLKRFPEIS---CNIEHLDLKETAIEELPSSIGNLSRLVHLDL 214 (566)
Q Consensus 148 ~~c~~l~~lp~~~~----------l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 214 (566)
++|+.++.+|..+. +++|++|++++|... .+|..+ .+|++|++++|.+..+|..++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 88888888887652 667777777765432 454432 3566666666666666666666666666666
Q ss_pred cCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc-ccCcccccCCCCCEEEccCC
Q 037314 215 TNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIACLNRVESLSFDRC 288 (566)
Q Consensus 215 ~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~~ 288 (566)
++|...+.+|..+..+++|++|++++|...+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.+.+..+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 666666666666666666666666666666666666666666666666665443 55666666666666555543
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=225.45 Aligned_cols=268 Identities=21% Similarity=0.204 Sum_probs=176.7
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCA 127 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 127 (566)
....+.+++.++++|..+. ++|++|++++|+++.++. .+..+++|++|++++|.+....|+ ++.+++|++|++++|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4457888888999987654 589999999999998876 688899999999999986665554 8888999999999887
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccCC--cC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCcccc
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIG 204 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~ 204 (566)
.....+..++.+++|++|++++ +.++.+|. .+ .+++|++|++++|..++.++ +..+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~ 171 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------RKDFA 171 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------TTTTT
T ss_pred CCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccC-------------------HHHcc
Confidence 6654445588889999999988 45667766 23 67777777777764333221 22344
Q ss_pred CCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccc-ccCCCCccceeccCCccccccCcccccCCCCCEE
Q 037314 205 NLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPE-EIGNLESLEVMLANETAISQVPPSIACLNRVESL 283 (566)
Q Consensus 205 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~-~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 283 (566)
.+++|++|++++|...+..|..+..+++|++|++++|.. +.+|. .+..+++|+.|++++|.++.++..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---------- 240 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS---------- 240 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccc----------
Confidence 555555555555555444455555555555555555543 22222 223345555555555555433210
Q ss_pred EccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEeccCCCCeecCcch-hcCCCCcEe
Q 037314 284 SFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNLAENDFEKIPSSI-KQLSKLLFL 357 (566)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L 357 (566)
.++.......++.++++++.+.+ +|..+..+++|++|+|++|.++.+|..+ ..+++|++|
T Consensus 241 --------------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 241 --------------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp --------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred --------------ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence 11112234456666666666554 6667777888888888888888888774 778888888
Q ss_pred cccccc
Q 037314 358 TLRNCK 363 (566)
Q Consensus 358 ~L~~c~ 363 (566)
++++|+
T Consensus 307 ~L~~N~ 312 (353)
T 2z80_A 307 WLHTNP 312 (353)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 888886
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.6e-24 Score=217.86 Aligned_cols=225 Identities=24% Similarity=0.342 Sum_probs=145.3
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCccccccCCCCCCCc
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALK 96 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~ 96 (566)
.+++.|+++++ .. ..+|..+..++ +|++|++++|.++.+|..+ .+++|++|++++|+++.+|..+..+++|+
T Consensus 81 ~~l~~L~L~~n-----~l-~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSV-----PL-PQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESS-----CC-SSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cceeEEEccCC-----Cc-hhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 55666666552 11 24555555543 5666666666665555544 55566666666666665555556666666
Q ss_pred EEecCCCCCCCCCCC-CC---------CCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCc
Q 037314 97 RLNLSYSKQLSRIPD-IS---------LAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSL 165 (566)
Q Consensus 97 ~L~Ls~~~~l~~~p~-l~---------~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L 165 (566)
+|++++|...+.+|. +. ++++|++|++++|... .+|..++.+++|++|++++| .++.+|..+ .+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCC
Confidence 666666555555543 22 2555555555555433 45555555555555555552 333444433 44555
Q ss_pred cEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCc
Q 037314 166 KVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLE 245 (566)
Q Consensus 166 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~ 245 (566)
++|++++|... ..+|..++.+++|++|++++|...+.+|..+.++++|++|++++|...+
T Consensus 232 ~~L~Ls~n~~~--------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 232 EELDLRGCTAL--------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CEEECTTCTTC--------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CEEECcCCcch--------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 55555544332 3466778889999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccceeccCCccccccC
Q 037314 246 KLPEEIGNLESLEVMLANETAISQVP 271 (566)
Q Consensus 246 ~~p~~l~~l~~L~~L~l~~n~l~~l~ 271 (566)
.+|..++++++|+.+++..+.+..+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hccHHHhhccCceEEeCCHHHHHHHh
Confidence 99999999999999998877665443
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.5e-24 Score=218.08 Aligned_cols=230 Identities=20% Similarity=0.266 Sum_probs=136.1
Q ss_pred CCCcEEecCCCCCCC--CCCC-CCCCCCccEEEeeC-CCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEE
Q 037314 93 AALKRLNLSYSKQLS--RIPD-ISLAFNIERLDLVG-CASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVL 168 (566)
Q Consensus 93 ~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~-c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 168 (566)
.+++.|+|+++.+.. .+|. ++.+++|++|++++ |...+.+|..++.+++|++|++++|.....+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence 355666666665544 3332 55555555555553 444445555555555555555555322223333
Q ss_pred EecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccc
Q 037314 169 YLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLP 248 (566)
Q Consensus 169 ~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p 248 (566)
.+..+++|++|++++|...+.+|..+..+++|++|++++|...+.+|
T Consensus 120 ---------------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 120 ---------------------------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp ---------------------------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred ---------------------------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 33344444444444444433444444444444444444444444444
Q ss_pred cccCCCC-ccceeccCCcccc-ccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCC
Q 037314 249 EEIGNLE-SLEVMLANETAIS-QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLG 326 (566)
Q Consensus 249 ~~l~~l~-~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~ 326 (566)
..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|..... ....+..+++|+.|++++|.++..+..+.
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 241 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGGCC
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCccc
Confidence 4444444 4444444444444 3444444444 55555555542211 11226677889999999999987666688
Q ss_pred CCCCCCEEeccCCCCe-ecCcchhcCCCCcEecccccccCCcCCC
Q 037314 327 RSPSLNYLNLAENDFE-KIPSSIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 327 ~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
.+++|++|+|++|.++ .+|..+..+++|++|++++|+....+|.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9999999999999998 7899999999999999999987767886
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.7e-27 Score=251.17 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=188.2
Q ss_pred cceEEEeCCccCC-----CCCCCC-CCCCeEEEEcCCCCCccc-cc-cCCCCC----CCcEEecCCCCCCC----CCCC-
Q 037314 49 ELRYFYWDGYPLK-----SLPSKN-IPEHLVSLEMPHSNIEQL-WN-GVQNLA----ALKRLNLSYSKQLS----RIPD- 111 (566)
Q Consensus 49 ~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~l-~~-~~~~l~----~L~~L~Ls~~~~l~----~~p~- 111 (566)
+|++|++++|.++ .++..+ .+++|++|++++|++... +. -...++ +|++|+|++|.+.. .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 5666666666655 223322 456666666666666531 11 112232 56666666665442 1222
Q ss_pred CCCCCCccEEEeeCCCCccccchhhhh-----cccCcEEecCCCCCCC----ccCCcC-CCCCccEEEecCCCCCCcCC-
Q 037314 112 ISLAFNIERLDLVGCASLIETHSSIQH-----LNKLVFLNLGHCISLK----SLPTGI-NLDSLKVLYLGGCSNLKRFP- 180 (566)
Q Consensus 112 l~~l~~L~~L~L~~c~~~~~~~~~~~~-----l~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~L~~~~~l~~~~- 180 (566)
+..+++|++|++++|......+..+.. .++|++|++++|.... .++..+ .+++|++|++++|......+
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 566666666666666543332222222 3456666666653221 112222 45666666666665322111
Q ss_pred ---c----ccCCCCEEecCCCCCcc-----cCccccCCCCCcEEeccCCCCcccc-----cccccCCCCCcEEeccCCcC
Q 037314 181 ---E----ISCNIEHLDLKETAIEE-----LPSSIGNLSRLVHLDLTNCSRLKSV-----SSSLCNLKSLVNLYLSGCLK 243 (566)
Q Consensus 181 ---~----~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~l~~l-----p~~l~~l~~L~~L~ls~~~~ 243 (566)
. ...+|++|++++|.+.. ++..+..+++|++|++++|...... +..+..+++|++|++++|..
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 1 12367777777777765 5666777888888888887644321 22223577888888888865
Q ss_pred Ccc----cccccCCCCccceeccCCcccccc-----Ccccc-cCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEe
Q 037314 244 LEK----LPEEIGNLESLEVMLANETAISQV-----PPSIA-CLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLS 312 (566)
Q Consensus 244 l~~----~p~~l~~l~~L~~L~l~~n~l~~l-----~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~ 312 (566)
... ++..+..+++|+.|++++|.++.. ...+. ..++|++|++++|....... ..++. +..+++|++|+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-SHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HHHHHHHHHCSSCCEEE
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-HHHHHHHhhCCCccEEE
Confidence 443 566677788888888888877632 22222 23688888888887332100 01222 56678899999
Q ss_pred cccCCCccc-C----CCCC-CCCCCCEEeccCCCCe-----ecCcchhcCCCCcEecccccc
Q 037314 313 LVDCGITEL-P----ESLG-RSPSLNYLNLAENDFE-----KIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 313 L~~~~l~~l-p----~~l~-~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 363 (566)
+++|.+.+. + ..+. ..++|++|+|++|.++ .+|..+..+++|++|++++|+
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999988762 2 2222 2678999999999987 678888889999999999886
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.6e-25 Score=222.37 Aligned_cols=264 Identities=15% Similarity=0.072 Sum_probs=165.8
Q ss_pred CeEEEEcCCCCCcccccc-CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecC
Q 037314 71 HLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLG 148 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~ 148 (566)
.+..++++.+.+.+.+.. +..+++|++|+|++|.+....|+ +..+++|++|+|++|...+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455556666666644433 35566777777777775554443 6777777777777776554433 6777777777777
Q ss_pred CCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCccccccccc
Q 037314 149 HCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLC 228 (566)
Q Consensus 149 ~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 228 (566)
+| .++.++. .++|++|++++|......+.. +++|++|++++|......+..+.
T Consensus 89 ~n-~l~~l~~---~~~L~~L~l~~n~l~~~~~~~-----------------------~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 89 NN-YVQELLV---GPSIETLHAANNNISRVSCSR-----------------------GQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp SS-EEEEEEE---CTTCCEEECCSSCCSEEEECC-----------------------CSSCEEEECCSSCCCSGGGBCTG
T ss_pred CC-ccccccC---CCCcCEEECCCCccCCcCccc-----------------------cCCCCEEECCCCCCCCccchhhh
Confidence 74 3444442 255555555554433322233 34444555544444443344444
Q ss_pred CCCCCcEEeccCCcCCccccccc-CCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCC
Q 037314 229 NLKSLVNLYLSGCLKLEKLPEEI-GNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQN 307 (566)
Q Consensus 229 ~l~~L~~L~ls~~~~l~~~p~~l-~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~ 307 (566)
.+++|++|++++|...+..+..+ ..+++|++|++++|.++.++.. ..+++|++|++++|....- .+.+..+++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~ 215 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM-----GPEFQSAAG 215 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE-----CGGGGGGTT
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc-----hhhhcccCc
Confidence 55555555555554444333333 2455555555555555555332 2356666666666653320 122567788
Q ss_pred CcEEecccCCCcccCCCCCCCCCCCEEeccCCCCe--ecCcchhcCCCCcEecccccccCCcCC
Q 037314 308 LEYLSLVDCGITELPESLGRSPSLNYLNLAENDFE--KIPSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 308 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
|++|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++.+|+.++...
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 99999999999999999999999999999999998 778889999999999999888766543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.2e-23 Score=208.85 Aligned_cols=243 Identities=22% Similarity=0.261 Sum_probs=137.0
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccccc-CCCCCCCcEEecCCCCCCCC---CCCCCCCCCccEEEeeCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYSKQLSR---IPDISLAFNIERLDLVGC 126 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~---~p~l~~l~~L~~L~L~~c 126 (566)
+.++++++.++++|..+. ++|++|++++|+++.++.. +..+++|++|+|++|.+... .+.+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 355666666666665442 5666666666666666554 45666666666666653321 112333445555555544
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc--ccc
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS--SIG 204 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~--~~~ 204 (566)
... .++..+..+++|++|++++ |.+..++. .+.
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~--------------------------------------------n~l~~~~~~~~~~ 123 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQH--------------------------------------------SNLKQMSEFSVFL 123 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTT--------------------------------------------SEEESSTTTTTTT
T ss_pred ccc-cChhhcCCCCCCCEEECCC--------------------------------------------Ccccccccchhhh
Confidence 322 2333344444444444444 22222221 344
Q ss_pred CCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCc-ccccccCCCCccceeccCCcccccc-CcccccCCCCCE
Q 037314 205 NLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLE-KLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVES 282 (566)
Q Consensus 205 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~-~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~ 282 (566)
.+++|++|++++|...+..+..+..+++|++|++++|...+ .+|..+..+++|+.|++++|.++.+ |..+..+++|++
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 45555555555555444445555555566666666555443 3455555666666666666666544 345555666666
Q ss_pred EEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCCCCCC-CCCEEeccCCCCee
Q 037314 283 LSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESLGRSP-SLNYLNLAENDFEK 343 (566)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~-~L~~L~Ls~n~l~~ 343 (566)
|++++|.... .....+..+++|+.|++++|.+.+ .|..+..++ +|++|+|++|.++.
T Consensus 204 L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 204 LNMSHNNFFS----LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTSCCSB----CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EECCCCccCc----cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6666665322 111125667888888888888887 456777774 89999999998763
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=8.8e-23 Score=216.04 Aligned_cols=238 Identities=19% Similarity=0.199 Sum_probs=186.6
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
..+.++..+..++.+|..+ ++++++|++++|+|+.+ +..+..+++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567788888888888765 36899999999999877 56788999999999999987665544 888999999999998
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCc----ccCCCCEEecCCCCCcccC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPE----ISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~~~i~~lp 200 (566)
......+..+..+++|++|++++ +.++.+|... .+++|++|++++|..++.++. ...+|++|++++|.+..+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 87666566688899999999988 4567777643 789999999998887777664 2357888888888888886
Q ss_pred ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCC
Q 037314 201 SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNR 279 (566)
Q Consensus 201 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~ 279 (566)
. +..+++|+.|++++|...+..|..+.++++|++|++++|...+..+..+..+++|+.|++++|.++.+|. .+..+++
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 4 7778888888888888777777888888888888888887777777778888888888888888877664 3455666
Q ss_pred CCEEEccCCC
Q 037314 280 VESLSFDRCK 289 (566)
Q Consensus 280 L~~L~l~~~~ 289 (566)
|+.|++++|.
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 6666666665
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.4e-22 Score=220.95 Aligned_cols=267 Identities=21% Similarity=0.214 Sum_probs=215.0
Q ss_pred cCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcE
Q 037314 18 HRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 97 (566)
Q Consensus 18 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 97 (566)
.+++.|+++++ ....+|..+ +++|++|++++|.++.+|. .+++|++|++++|+++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n------~L~~lp~~l---~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGES------GLTTLPDCL---PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSS------CCSCCCSCC---CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCcEEEecCC------CcCccChhh---CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 47999999883 223566654 4699999999999999998 67899999999999999987 7899999
Q ss_pred EecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCC
Q 037314 98 LNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLK 177 (566)
Q Consensus 98 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~ 177 (566)
|++++|.+. .+|. .+++|++|++++|... .+|.. +++|++|++++| .++.+|. .+.+|+.|++++|. ++
T Consensus 106 L~Ls~N~l~-~l~~--~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~-l~ 174 (622)
T 3g06_A 106 LSIFSNPLT-HLPA--LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNNQ-LT 174 (622)
T ss_dssp EEECSCCCC-CCCC--CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CS
T ss_pred EECcCCcCC-CCCC--CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCCC-CC
Confidence 999999754 4555 6789999999998754 45653 589999999995 6777776 46889999999975 55
Q ss_pred cCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCcc
Q 037314 178 RFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESL 257 (566)
Q Consensus 178 ~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L 257 (566)
.+|....+|+.|++++|.+..+|.. +++|+.|++++|... .+|. .+++|++|++++|... .+| ..+++|
T Consensus 175 ~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L 243 (622)
T 3g06_A 175 SLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSEL 243 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTC
T ss_pred CCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcC
Confidence 6888888999999999999999874 478999999997654 5554 3588999999998554 466 556889
Q ss_pred ceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEecc
Q 037314 258 EVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLA 337 (566)
Q Consensus 258 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls 337 (566)
+.|++++|.++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|+
T Consensus 244 ~~L~Ls~N~L~~lp~-------------------------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 244 KELMVSGNRLTSLPM-------------------------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CEEECCSSCCSCCCC-------------------------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred cEEECCCCCCCcCCc-------------------------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 999999998887764 2356778888888888888888889999999999
Q ss_pred CCCCee-cCcchhcC
Q 037314 338 ENDFEK-IPSSIKQL 351 (566)
Q Consensus 338 ~n~l~~-lp~~i~~l 351 (566)
+|.++. .|..+..+
T Consensus 293 ~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 293 GNPLSERTLQALREI 307 (622)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhc
Confidence 999873 44444443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=214.75 Aligned_cols=238 Identities=20% Similarity=0.210 Sum_probs=179.4
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
..+.++..+..++.+|..+. ++++.|++++|+++.++ ..+..+++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45677888888888887654 68888999999888775 5678888999999988876554443 888888999999888
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCc----ccCCCCEEecCCCCCcccC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPE----ISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~~~i~~lp 200 (566)
......+..+..+++|++|++++ +.++.+|... .+++|++|++++|..+..++. ...+|++|++++|.++.+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 76655556788888899999988 4566666533 788888888888777766654 2347777888888888777
Q ss_pred ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCC
Q 037314 201 SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNR 279 (566)
Q Consensus 201 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~ 279 (566)
. +..+++|+.|++++|...+..|..+.++++|++|++++|......+..+.++++|+.|++++|.++.++. .+..+++
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4 6777888888888877766667777888888888888877766667777777888888888877776654 3455666
Q ss_pred CCEEEccCCC
Q 037314 280 VESLSFDRCK 289 (566)
Q Consensus 280 L~~L~l~~~~ 289 (566)
|+.|++++|.
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 6666666655
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=213.02 Aligned_cols=239 Identities=23% Similarity=0.311 Sum_probs=157.1
Q ss_pred CeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCC
Q 037314 71 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGH 149 (566)
Q Consensus 71 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~ 149 (566)
....++..+.+++.+|.++. ++++.|+|++|.+....+ .|..+++|++|+|++|......+..|..+++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45688889999999998775 689999999998666554 488899999999999887776677888899999999988
Q ss_pred CCCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc-cccCCCCCcEEeccCCCCcccccc-
Q 037314 150 CISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSS- 225 (566)
Q Consensus 150 c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~- 225 (566)
| .++.+|... .+++|++|++++ |.+..+|. .+..+++|++|++++|..++.++.
T Consensus 122 n-~l~~~~~~~~~~l~~L~~L~L~~---------------------N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 122 N-RLTTIPNGAFVYLSKLKELWLRN---------------------NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp S-CCSSCCTTTSCSCSSCCEEECCS---------------------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred C-cCCeeCHhHhhccccCceeeCCC---------------------CcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 4 566666532 455555555544 44455544 466777888888877766666554
Q ss_pred cccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCCCCCCCCCCCCcccccC
Q 037314 226 SLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQ 304 (566)
Q Consensus 226 ~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (566)
.+.++++|++|++++|... .+| .+..+++|+.|++++|.++.+ |..+..+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------- 230 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL--------------------------- 230 (440)
T ss_dssp TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC---------------------------
T ss_pred hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC---------------------------
Confidence 5667777777777776443 444 355666666666666666654 3344444
Q ss_pred CCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccc
Q 037314 305 LQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
++|++|++++|++..+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 231 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 231 -MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 4555555555555553 34455555555555555555555433 3455555555555554
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3.6e-26 Score=242.52 Aligned_cols=344 Identities=17% Similarity=0.131 Sum_probs=248.6
Q ss_pred HHhcCcCCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCC--CCC-CCC----CeEEEEcCCCCCc--
Q 037314 13 TFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLP--SKN-IPE----HLVSLEMPHSNIE-- 83 (566)
Q Consensus 13 ~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp--~~~-~~~----~L~~L~L~~~~i~-- 83 (566)
.|..+++|+.|+++++. ........++..+..++ +|++|++++|.+.... ..+ .++ +|++|++++|+++
T Consensus 23 ~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 48899999999999841 00001113456667775 8999999999876421 111 233 7999999999998
Q ss_pred ---cccccCCCCCCCcEEecCCCCCCCCCCC------CCCCCCccEEEeeCCCCccc----cchhhhhcccCcEEecCCC
Q 037314 84 ---QLWNGVQNLAALKRLNLSYSKQLSRIPD------ISLAFNIERLDLVGCASLIE----THSSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 84 ---~l~~~~~~l~~L~~L~Ls~~~~l~~~p~------l~~l~~L~~L~L~~c~~~~~----~~~~~~~l~~L~~L~L~~c 150 (566)
.++..+..+++|++|++++|.+....+. ....++|++|++++|..... ++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4578899999999999999985432221 23456899999999987663 4566788899999999996
Q ss_pred CCCCcc-----CCcC--CCCCccEEEecCCCCCCc----CCc---ccCCCCEEecCCCCCccc------CccccCCCCCc
Q 037314 151 ISLKSL-----PTGI--NLDSLKVLYLGGCSNLKR----FPE---ISCNIEHLDLKETAIEEL------PSSIGNLSRLV 210 (566)
Q Consensus 151 ~~l~~l-----p~~~--~l~~L~~L~L~~~~~l~~----~~~---~~~~L~~L~L~~~~i~~l------p~~~~~l~~L~ 210 (566)
. ++.. ...+ ..++|++|++++|..... ++. ...+|++|++++|.+... +.....+++|+
T Consensus 181 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 181 D-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp B-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred C-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 5 4432 1111 366999999999865442 343 246899999999998753 23344689999
Q ss_pred EEeccCCCCccc----ccccccCCCCCcEEeccCCcCCcccccccC-----CCCccceeccCCccccc-----cCccccc
Q 037314 211 HLDLTNCSRLKS----VSSSLCNLKSLVNLYLSGCLKLEKLPEEIG-----NLESLEVMLANETAISQ-----VPPSIAC 276 (566)
Q Consensus 211 ~L~L~~~~~l~~----lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~-----~l~~L~~L~l~~n~l~~-----l~~~l~~ 276 (566)
+|++++|..... ++..+..+++|++|++++|......+..+. ..++|+.|++++|.++. ++..+..
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 999999966553 677788899999999999976543333332 33699999999999884 4667788
Q ss_pred CCCCCEEEccCCCCCCCCCCCCccccc-----CCCCCcEEecccCCCc-----ccCCCCCCCCCCCEEeccCCCCeec--
Q 037314 277 LNRVESLSFDRCKGRPPLMSLKLPILF-----QLQNLEYLSLVDCGIT-----ELPESLGRSPSLNYLNLAENDFEKI-- 344 (566)
Q Consensus 277 l~~L~~L~l~~~~~~~~~~~~~l~~~~-----~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~l-- 344 (566)
+++|++|++++|.... .....+. ..++|++|++++|.++ .+|..+..+++|++|+|++|+++..
T Consensus 340 ~~~L~~L~Ls~n~i~~----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 340 NRFLLELQISNNRLED----AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp CSSCCEEECCSSBCHH----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred CCCccEEEccCCcccc----ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 8999999999996321 1111122 2679999999999999 4788888899999999999998732
Q ss_pred ---Ccchh-cCCCCcEecccccc
Q 037314 345 ---PSSIK-QLSKLLFLTLRNCK 363 (566)
Q Consensus 345 ---p~~i~-~l~~L~~L~L~~c~ 363 (566)
...+. ...+|+.|++.++.
T Consensus 416 ~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 416 LQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhccCCcchhheeecccc
Confidence 11221 23456666665543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.1e-22 Score=211.83 Aligned_cols=222 Identities=21% Similarity=0.224 Sum_probs=195.0
Q ss_pred CCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEE
Q 037314 46 LFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERL 121 (566)
Q Consensus 46 l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L 121 (566)
+|.++++|++++|.++.++. .| .+++|++|++++|+++.++ ..+..+++|++|+|++|.+....++ |..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 45689999999999998864 44 8999999999999999875 6789999999999999986655555 8899999999
Q ss_pred EeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcc--cCCCCEEecCCCCCc
Q 037314 122 DLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEI--SCNIEHLDLKETAIE 197 (566)
Q Consensus 122 ~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~--~~~L~~L~L~~~~i~ 197 (566)
+|++|......+..+..+++|++|++++|+.++.++... .+++|++|++++|. +..+|.. ..+|++|++++|.+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCc
Confidence 999998776666789999999999999999999998754 89999999999985 4455643 358999999999999
Q ss_pred cc-CccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc
Q 037314 198 EL-PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS 268 (566)
Q Consensus 198 ~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~ 268 (566)
.+ |..+..+++|+.|++++|......+..+.++++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 87 567999999999999999988888889999999999999999877666677899999999999999876
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=209.01 Aligned_cols=251 Identities=18% Similarity=0.215 Sum_probs=177.0
Q ss_pred CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEe
Q 037314 68 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLN 146 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~ 146 (566)
.++.....++++++++.+|.++. ++|++|++++|.+....+ .+..+++|++|++++|......+..+..+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 34444558889999999988765 489999999998665444 488889999999998877766667788888888888
Q ss_pred cCCCCCCCccCCc-C-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc--cccCCCCCcEEeccCCCCccc
Q 037314 147 LGHCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS--SIGNLSRLVHLDLTNCSRLKS 222 (566)
Q Consensus 147 L~~c~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~ 222 (566)
+++ +.++.+|.. + .+++|++|++++ |.+..+|. .+..+++|++|++++|...+.
T Consensus 107 Ls~-n~l~~~~~~~~~~l~~L~~L~L~~---------------------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 107 LSY-NYLSNLSSSWFKPLSSLTFLNLLG---------------------NPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCS-SCCSSCCHHHHTTCTTCSEEECTT---------------------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCC-CcCCcCCHhHhCCCccCCEEECCC---------------------CCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 887 455555543 2 455555554444 45555655 567778888888887754444
Q ss_pred c-cccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc
Q 037314 223 V-SSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 223 l-p~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
+ +..+.++++|++|++++|...+..|..+..+++|+.|++++|.++.+|..+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------------------------- 217 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF--------------------------- 217 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH---------------------------
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh---------------------------
Confidence 4 456777777777777777666666666777777777777666665554322
Q ss_pred ccCCCCCcEEecccCCCcccC-C---CCCCCCCCCEEeccCCCCe-----ecCcchhcCCCCcEecccccccCCcCCC
Q 037314 302 LFQLQNLEYLSLVDCGITELP-E---SLGRSPSLNYLNLAENDFE-----KIPSSIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~lp-~---~l~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
+..+++|++|++++|.+..++ . .....+.++.++++++.+. .+|..+..+++|++|++++|+ ++.+|.
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~ 294 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD 294 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH
Confidence 234567777777777777643 1 2345678899999998876 578889999999999999996 566664
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=9.2e-23 Score=202.19 Aligned_cols=216 Identities=22% Similarity=0.237 Sum_probs=132.8
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCAS 128 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 128 (566)
+.+++++..++.+|..+ +++|++|++++|+++.++ ..+..+++|++|++++|.+....|. +..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 66778888888888654 568888888888888776 4577888888888888876555443 77778888888887763
Q ss_pred ccc-cchhhhhcccCcEEecCCCCCCCcc-CCcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCcc-cc
Q 037314 129 LIE-THSSIQHLNKLVFLNLGHCISLKSL-PTGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSS-IG 204 (566)
Q Consensus 129 ~~~-~~~~~~~l~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-~~ 204 (566)
... .+..+..+++|++|++++|. ++.+ |..+ .+++|++|++++ |.+..++.. +.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~~ 150 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD---------------------NALQALPDDTFR 150 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCC---------------------CcccccCHhHhc
Confidence 333 35667777777777777743 3333 3222 455555555544 344444432 55
Q ss_pred CCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEE
Q 037314 205 NLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESL 283 (566)
Q Consensus 205 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L 283 (566)
.+++|++|++++|......+..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 56666666666654443333445566666666666665555555555555556666655555555443 24444444444
Q ss_pred EccCCC
Q 037314 284 SFDRCK 289 (566)
Q Consensus 284 ~l~~~~ 289 (566)
++++|.
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 444443
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2e-22 Score=201.82 Aligned_cols=211 Identities=21% Similarity=0.210 Sum_probs=144.5
Q ss_pred ceEEcCCCccCCCccceEEEeCCccCCCCCCCC--CCCCeEEEEcCCCCCccc---cccCCCCCCCcEEecCCCCCCCCC
Q 037314 35 YKVRHSRYLESLFNELRYFYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQL---WNGVQNLAALKRLNLSYSKQLSRI 109 (566)
Q Consensus 35 ~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~Ls~~~~l~~~ 109 (566)
....+|.+ +|.+|++|++++|.++.+|..+ .+++|++|++++|+++.+ +..+..+++|++|++++|.+....
T Consensus 18 ~l~~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 18 GLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CCSSCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred CcccCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 34455554 3568999999999999999763 899999999999999865 566778999999999999865443
Q ss_pred CCCCCCCCccEEEeeCCCCccccc-hhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCcccCCCC
Q 037314 110 PDISLAFNIERLDLVGCASLIETH-SSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEISCNIE 187 (566)
Q Consensus 110 p~l~~l~~L~~L~L~~c~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~ 187 (566)
+.+..+++|++|++++|......+ ..+..+++|++|++++|......+..+ .+++|++|++++|
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------- 160 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-------------- 160 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--------------
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--------------
Confidence 458899999999999987655443 568888888888888854333333333 4555555555554
Q ss_pred EEecCCCCCcc--cCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 188 HLDLKETAIEE--LPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 188 ~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
.+.+ +|..+..+++|++|++++|...+..|..+..+++|++|++++|...+..+..+..+++|+.|++++|
T Consensus 161 -------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 161 -------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp -------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred -------ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 3332 4555556666666666666555554555566666666666665554444444555555555555555
Q ss_pred cccc
Q 037314 266 AISQ 269 (566)
Q Consensus 266 ~l~~ 269 (566)
.+..
T Consensus 234 ~l~~ 237 (306)
T 2z66_A 234 HIMT 237 (306)
T ss_dssp CCCB
T ss_pred CCcc
Confidence 5553
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.2e-23 Score=220.24 Aligned_cols=235 Identities=15% Similarity=0.074 Sum_probs=136.2
Q ss_pred CCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecC
Q 037314 94 ALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGG 172 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 172 (566)
+|++|+|++|.+....| .|+.+++|++|+|++|...+..+ ++.+++|++|++++| .++.+|. .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC---CCCcCEEECcC
Confidence 55555655555444333 25555556666665555443333 555566666666553 3333332 24444444444
Q ss_pred CCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccC
Q 037314 173 CSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIG 252 (566)
Q Consensus 173 ~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~ 252 (566)
|......+.. +++|+.|++++|...+..|..+..+++|++|++++|...+..|..+.
T Consensus 109 N~l~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 109 NNISRVSCSR-----------------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp SCCCCEEECC-----------------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CcCCCCCccc-----------------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 4332222222 33444444444444444444444455555555555544444444443
Q ss_pred -CCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCC
Q 037314 253 -NLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSL 331 (566)
Q Consensus 253 -~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L 331 (566)
.+++|+.|++++|.++.++. ...+++|+.|++++|..... .+.+..+++|+.|++++|.++.+|..++.+++|
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 45555555555555554433 22355666666666553321 122566788888999999999999999999999
Q ss_pred CEEeccCCCCe--ecCcchhcCCCCcEecccccc
Q 037314 332 NYLNLAENDFE--KIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 332 ~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~ 363 (566)
+.|++++|.+. .+|..+..++.|+.|++..+.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 99999999987 778888889999998887444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=5.7e-23 Score=207.00 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=179.8
Q ss_pred CCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecC
Q 037314 94 ALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGG 172 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 172 (566)
.++..+++.+.+...++. +..+++|++|+|++|......+..+..+++|++|++++| .+..++....+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcC
Confidence 345556665543322222 455678888888888776666677888888888888874 344333322455555555554
Q ss_pred CCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccC
Q 037314 173 CSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIG 252 (566)
Q Consensus 173 ~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~ 252 (566)
|.+.+++. .++|++|++++|...+..+. .+++|++|++++|...+..+..+.
T Consensus 90 ---------------------n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 90 ---------------------NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp ---------------------SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred ---------------------CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh
Confidence 45555442 37899999998876655443 368899999999988887788899
Q ss_pred CCCccceeccCCccccccC-ccc-ccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCC
Q 037314 253 NLESLEVMLANETAISQVP-PSI-ACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPS 330 (566)
Q Consensus 253 ~l~~L~~L~l~~n~l~~l~-~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~ 330 (566)
.+++|+.|++++|.++.++ ..+ ..+++|++|++++|.... ++....+++|++|++++|+++.+|..+..+++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------EECCCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc------cccccccccCCEEECCCCcCCcchhhhcccCc
Confidence 9999999999999999764 444 478999999999998543 34455689999999999999999888999999
Q ss_pred CCEEeccCCCCeecCcchhcCCCCcEecccccccC
Q 037314 331 LNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCKRL 365 (566)
Q Consensus 331 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L 365 (566)
|++|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 99999999999999999999999999999999844
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.1e-23 Score=209.69 Aligned_cols=243 Identities=19% Similarity=0.182 Sum_probs=157.3
Q ss_pred CCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCc-cccchhhh-------hcccCcEEecCCCCCCCccCCcC
Q 037314 90 QNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASL-IETHSSIQ-------HLNKLVFLNLGHCISLKSLPTGI 160 (566)
Q Consensus 90 ~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~-~~~~~~~~-------~l~~L~~L~L~~c~~l~~lp~~~ 160 (566)
...++|+.|++++|.+ .+|. +... |++|+|++|... ..++..+. .+++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4556677777777775 4443 3322 677777776652 34454444 56777777777754444555542
Q ss_pred ---CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCC-----CCCcEEeccCCCCcccccccccCCCC
Q 037314 161 ---NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNL-----SRLVHLDLTNCSRLKSVSSSLCNLKS 232 (566)
Q Consensus 161 ---~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~ 232 (566)
.+++|++|++++| .+..+|..++.+ ++|++|++++|...+..|..+.++++
T Consensus 116 ~~~~l~~L~~L~Ls~N---------------------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 116 LEATGPDLNILNLRNV---------------------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SSCCSCCCSEEEEESC---------------------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHhcCCCccEEEccCC---------------------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 4555666555554 444444444433 56666666666555555556666666
Q ss_pred CcEEeccCCcCCcc--ccccc--CCCCccceeccCCccccccC---c-ccccCCCCCEEEccCCCCCCCCCCCCcccccC
Q 037314 233 LVNLYLSGCLKLEK--LPEEI--GNLESLEVMLANETAISQVP---P-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQ 304 (566)
Q Consensus 233 L~~L~ls~~~~l~~--~p~~l--~~l~~L~~L~l~~n~l~~l~---~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (566)
|++|++++|...+. ++..+ ..+++|+.|++++|.++.++ . .+..+++|++|++++|...... ..+.+..
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~ 251 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSCDW 251 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---chhhhhh
Confidence 66666666655443 22233 56667777777777666332 2 2345677777777777644321 1233556
Q ss_pred CCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 305 LQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
+++|++|++++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|++|++++|+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 7899999999999999988777 899999999999998887 8899999999999987
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=6.1e-21 Score=189.06 Aligned_cols=208 Identities=21% Similarity=0.251 Sum_probs=160.0
Q ss_pred eEEcCCCccCCCccceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCC-CC
Q 037314 36 KVRHSRYLESLFNELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRI-PD 111 (566)
Q Consensus 36 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p~ 111 (566)
...+|.+ +|++|+.|+++++.++.++.. + .+++|++|++++|+++.+ +..+..+++|++|++++|.....+ |.
T Consensus 23 l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 3445543 356999999999999999854 4 889999999999999987 678999999999999999845444 43
Q ss_pred -CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCc-C-CCCCccEEEecCCCCCCcCCcccCCCCE
Q 037314 112 -ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFPEISCNIEH 188 (566)
Q Consensus 112 -l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~ 188 (566)
+..+++|++|++++|......+..+..+++|++|++++| .++.++.. + .+++|++|++++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--------------- 163 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN--------------- 163 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS---------------
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC---------------
Confidence 899999999999999988777888999999999999995 56666653 3 5666666666664
Q ss_pred EecCCCCCcccCc-cccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccc
Q 037314 189 LDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAI 267 (566)
Q Consensus 189 L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l 267 (566)
.++.+|. .+..+++|++|++++|...+..|..+.++++|++|++++|...+..+..+..+++|+.|++++|.+
T Consensus 164 ------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 164 ------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ------cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 4444444 366677777777777766666677777777777777777766555555677777777777777776
Q ss_pred c
Q 037314 268 S 268 (566)
Q Consensus 268 ~ 268 (566)
.
T Consensus 238 ~ 238 (285)
T 1ozn_A 238 V 238 (285)
T ss_dssp E
T ss_pred c
Confidence 5
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=4e-24 Score=234.12 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=120.7
Q ss_pred HHHHhcCcCCcEEEEeecCCCCccceEEcCCCcc------------CCCccceEEEeCCccCCCCC-CCC-C-C-CCeEE
Q 037314 11 PNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLE------------SLFNELRYFYWDGYPLKSLP-SKN-I-P-EHLVS 74 (566)
Q Consensus 11 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~------------~l~~~Lr~L~l~~~~l~~lp-~~~-~-~-~~L~~ 74 (566)
+..+.++++|+.|++++++.... ...+|..+. .++ +|++|+++++.+.... ..+ . + .+|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAM--FNLIPENWGGYVTPWVTEISNNLR-QLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGG--GTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred HHHHHhCCCCeEEEecCCcchhh--cccccccccccchHHHHHHHhhCC-CCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 56677788888888876421000 011222211 343 6777777776544211 111 1 1 23777
Q ss_pred EEcCCCC-Cc--cccccCCCCCCCcEEecCCCCCCCC----CCC-CCCCCCccEEEeeCCCCc----cccchhhhhcccC
Q 037314 75 LEMPHSN-IE--QLWNGVQNLAALKRLNLSYSKQLSR----IPD-ISLAFNIERLDLVGCASL----IETHSSIQHLNKL 142 (566)
Q Consensus 75 L~L~~~~-i~--~l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~l~~L~~L~L~~c~~~----~~~~~~~~~l~~L 142 (566)
|++++|. +. .++.....+++|++|+|++|.+... ++. +..+++|++|++++|... ..++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 7776665 21 1222334566777777776654322 111 234566666666666554 2334445566666
Q ss_pred cEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCc---CC---cccCCCCEEecCCCCCcccCccccCCCCCcEEecc
Q 037314 143 VFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKR---FP---EISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLT 215 (566)
Q Consensus 143 ~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~---~~---~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 215 (566)
+.|++++| .+..+|..+ .+++|+.|+++++..... .+ ....+|+.|.++++....+|..+..+++|++|+++
T Consensus 223 ~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 223 VSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred cEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 66666664 233344333 556666666654222110 01 11234555555555445555555555556666665
Q ss_pred CCCCccc-ccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 216 NCSRLKS-VSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 216 ~~~~l~~-lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
+|..... ++..+..+++|++|+++++.....++.....+++|+.|+++
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 5552221 11223455555555555322222223333344555555555
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.5e-21 Score=206.46 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=174.7
Q ss_pred CCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCC
Q 037314 114 LAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKE 193 (566)
Q Consensus 114 ~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~ 193 (566)
.+++|++|+|++|......|..++.+++|++|+|++|. ++..+....+++|++|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~--------------------- 89 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN--------------------- 89 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCS---------------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecC---------------------
Confidence 45588888888887777667788888888888888854 44333322555555555555
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-Cc
Q 037314 194 TAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PP 272 (566)
Q Consensus 194 ~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~ 272 (566)
|.+..+|. .++|++|++++|...+..+. .+++|++|++++|...+..|..++.+++|+.|++++|.++.+ |.
T Consensus 90 N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 44555543 27889999998877665543 468999999999998888888999999999999999999964 55
Q ss_pred ccc-cCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcchhcC
Q 037314 273 SIA-CLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSSIKQL 351 (566)
Q Consensus 273 ~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l 351 (566)
.+. .+++|+.|++++|.... ++....+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCE------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred HHhhhCCcccEEecCCCcccc------ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 665 79999999999998543 34455689999999999999999888999999999999999999999999999
Q ss_pred CCCcEecccccccC
Q 037314 352 SKLLFLTLRNCKRL 365 (566)
Q Consensus 352 ~~L~~L~L~~c~~L 365 (566)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 99999999999844
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.4e-23 Score=229.68 Aligned_cols=366 Identities=15% Similarity=0.086 Sum_probs=252.2
Q ss_pred HHhcCcCCcEEEEeecCCCCccceEEcCCCccC-CCccceEEEeCCccC-C--CCCCCC-CCCCeEEEEcCCCCCcc---
Q 037314 13 TFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLES-LFNELRYFYWDGYPL-K--SLPSKN-IPEHLVSLEMPHSNIEQ--- 84 (566)
Q Consensus 13 ~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~-l~~~Lr~L~l~~~~l-~--~lp~~~-~~~~L~~L~L~~~~i~~--- 84 (566)
.+..+++|+.|+++++ ......+..+.. .|++|++|++++|.. . .++... .+++|++|++++|.+..
T Consensus 107 l~~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HHhhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 4458999999999983 111111222222 344599999998862 1 122222 67899999999998763
Q ss_pred --ccccCCCCCCCcEEecCCCCCCC----CCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCC---
Q 037314 85 --LWNGVQNLAALKRLNLSYSKQLS----RIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLK--- 154 (566)
Q Consensus 85 --l~~~~~~l~~L~~L~Ls~~~~l~----~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~--- 154 (566)
++.....+++|+.|++++|.+.. .++. +..+++|++|++++|...+ ++..+..+++|+.|+++.+....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH
Confidence 33345678999999999998652 2222 4678999999999987554 77889999999999998643331
Q ss_pred ccCCcC-CCCCccEEEecCCCCCCcCCc---ccCCCCEEecCCCCCcc--cCccccCCCCCcEEeccCCCCccccccccc
Q 037314 155 SLPTGI-NLDSLKVLYLGGCSNLKRFPE---ISCNIEHLDLKETAIEE--LPSSIGNLSRLVHLDLTNCSRLKSVSSSLC 228 (566)
Q Consensus 155 ~lp~~~-~l~~L~~L~L~~~~~l~~~~~---~~~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 228 (566)
..+..+ .+++|+.|+++++ ....+|. ...+|++|++++|.+.. ++..+..+++|++|+++++.....++..+.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 222223 7889999999885 3334443 34589999999998753 334468899999999995444445555567
Q ss_pred CCCCCcEEeccC----------CcCCcc--cccccCCCCccceeccCCcccc-ccCccccc-CCCCCEEEccCCCCCCCC
Q 037314 229 NLKSLVNLYLSG----------CLKLEK--LPEEIGNLESLEVMLANETAIS-QVPPSIAC-LNRVESLSFDRCKGRPPL 294 (566)
Q Consensus 229 ~l~~L~~L~ls~----------~~~l~~--~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~-l~~L~~L~l~~~~~~~~~ 294 (566)
.+++|++|++++ |...+. ++.....+++|+.|++..+.++ ..+..+.. +++|++|++.++.....+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 789999999994 655542 3333456889999999877777 33344444 889999999754311111
Q ss_pred CCC----Cccc-ccCCCCCcEEecccCC--Ccc-cCCC-CCCCCCCCEEeccCCCCe--ecCcchhcCCCCcEecccccc
Q 037314 295 MSL----KLPI-LFQLQNLEYLSLVDCG--ITE-LPES-LGRSPSLNYLNLAENDFE--KIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 295 ~~~----~l~~-~~~l~~L~~L~L~~~~--l~~-lp~~-l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~ 363 (566)
.+. .++. +.++++|++|++++|. +++ .+.. ...+++|++|+|++|.++ .++..+..+++|++|+|++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 111 1222 5668999999998664 444 2222 244788999999999986 456667888999999999998
Q ss_pred cCCc--CC----CCCCCCeEeecCCcCccc
Q 037314 364 RLQS--LP----ELPCGSTIFARHCTSLET 387 (566)
Q Consensus 364 ~L~~--lp----~lp~~~~L~~~~c~~L~~ 387 (566)
++. ++ .+|.++.|++.+|. +..
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 432 22 47778999999987 443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=5e-22 Score=199.63 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=148.1
Q ss_pred ccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcc--ccccCC-------CCCCCcEEecCCCCCCCCCCC-C--CCC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ--LWNGVQ-------NLAALKRLNLSYSKQLSRIPD-I--SLA 115 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-l--~~l 115 (566)
.+|++|++.++.+ .+|..+. ..|+.|++++|+++. ++..+. .+++|++|+|++|.+...+|. + +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3678888888888 7776442 228888898888864 455444 788999999999988777765 4 889
Q ss_pred CCccEEEeeCCCCccccchhhhhc-----ccCcEEecCCCCCCCccC-CcC-CCCCccEEEecCCCCCCcCCcccCCCCE
Q 037314 116 FNIERLDLVGCASLIETHSSIQHL-----NKLVFLNLGHCISLKSLP-TGI-NLDSLKVLYLGGCSNLKRFPEISCNIEH 188 (566)
Q Consensus 116 ~~L~~L~L~~c~~~~~~~~~~~~l-----~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~ 188 (566)
++|++|++++|...+. |..++.+ ++|++|++++| .++.++ ..+ .+++|++|++++|...+..+
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 190 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG-------- 190 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence 9999999999887666 7778777 88999999885 455555 444 78888888888876443211
Q ss_pred EecCCCCCcccCccc--cCCCCCcEEeccCCCCcc--ccc-ccccCCCCCcEEeccCCcCCcccc-cccCCCCccceecc
Q 037314 189 LDLKETAIEELPSSI--GNLSRLVHLDLTNCSRLK--SVS-SSLCNLKSLVNLYLSGCLKLEKLP-EEIGNLESLEVMLA 262 (566)
Q Consensus 189 L~L~~~~i~~lp~~~--~~l~~L~~L~L~~~~~l~--~lp-~~l~~l~~L~~L~ls~~~~l~~~p-~~l~~l~~L~~L~l 262 (566)
+|..+ +.+++|++|++++|.... .++ ..+.++++|++|++++|...+..| ..+..+++|+.|++
T Consensus 191 ----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 191 ----------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp ----------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred ----------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 11111 344444444444443321 111 122344555555555544444332 23334455555555
Q ss_pred CCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc
Q 037314 263 NETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE 320 (566)
Q Consensus 263 ~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~ 320 (566)
++|.++.+|..+. ++|++|++++|.... +|.+..+++|++|++++|.+++
T Consensus 261 s~N~l~~ip~~~~--~~L~~L~Ls~N~l~~------~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 261 SFTGLKQVPKGLP--AKLSVLDLSYNRLDR------NPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCCSSCCSSCC--SEEEEEECCSSCCCS------CCCTTTSCEEEEEECTTCTTTC
T ss_pred CCCccChhhhhcc--CCceEEECCCCCCCC------ChhHhhCCCCCEEeccCCCCCC
Confidence 5555555555444 555555555554322 2334556666666666666553
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.7e-19 Score=177.57 Aligned_cols=200 Identities=26% Similarity=0.258 Sum_probs=111.9
Q ss_pred CCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEE
Q 037314 89 VQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVL 168 (566)
Q Consensus 89 ~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 168 (566)
+.++++++.++++++.+....+++. +++++|+|++|......+..+..+++|++|++++ +.++.++....+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~---- 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPV---- 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTT----
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCCCCCCc----
Confidence 4556667777777665433222332 5677777777776666666777788888888877 34555544323333
Q ss_pred EecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccc
Q 037314 169 YLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLP 248 (566)
Q Consensus 169 ~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p 248 (566)
|++|++++|.+..+|..+..+++|++|++++|......+..+.++++|++|++++|...+..+
T Consensus 79 -----------------L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 79 -----------------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp -----------------CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred -----------------CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 444444445555666666666666666666665544444455555555555555554333222
Q ss_pred cccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCC-CCC
Q 037314 249 EEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPES-LGR 327 (566)
Q Consensus 249 ~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~-l~~ 327 (566)
..+..+ ++|+.|++++|+++.+|.. +..
T Consensus 142 ~~~~~l---------------------------------------------------~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 142 GLLTPT---------------------------------------------------PKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp TTTTTC---------------------------------------------------TTCCEEECTTSCCSCCCTTTTTT
T ss_pred hhcccc---------------------------------------------------cCCCEEECCCCcCCccCHHHhcC
Confidence 223333 3444444444444444432 344
Q ss_pred CCCCCEEeccCCCCeecCcchhcCCCCcEecccccc
Q 037314 328 SPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 328 l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 171 l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 555555555555555555555555556666665554
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.7e-19 Score=176.24 Aligned_cols=218 Identities=18% Similarity=0.178 Sum_probs=113.1
Q ss_pred EEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCcc
Q 037314 53 FYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLI 130 (566)
Q Consensus 53 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~ 130 (566)
.+..+..++.+|..+ +++|++|++++|+++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344555566666544 2466677777776666544 55666666666666665443333 25555555555555554443
Q ss_pred ccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc-cccCCCCC
Q 037314 131 ETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS-SIGNLSRL 209 (566)
Q Consensus 131 ~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L 209 (566)
..+..+..+++|++|++++| .+..++. .++.+++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET--------------------------------------------NLASLENFPIGHLKTL 126 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS--------------------------------------------CCCCSTTCCCTTCTTC
T ss_pred cChhhhcCCccccEEECCCC--------------------------------------------CccccCchhcccCCCC
Confidence 33334444444444444332 1122211 24445555
Q ss_pred cEEeccCCCCcc-cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCC
Q 037314 210 VHLDLTNCSRLK-SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRC 288 (566)
Q Consensus 210 ~~L~L~~~~~l~-~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~ 288 (566)
++|++++|.... .+|..+.++++|++|++++|...+..+..+..++
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------- 173 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--------------------------------- 173 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH---------------------------------
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh---------------------------------
Confidence 555555554433 2344455555555555555433322222222222
Q ss_pred CCCCCCCCCCcccccCCCCCc-EEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccc
Q 037314 289 KGRPPLMSLKLPILFQLQNLE-YLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 289 ~~~~~~~~~~l~~~~~l~~L~-~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
.++.|. +|++++|.+..++.......+|++|+|++|.++.+|.. +..+++|++|++++|+
T Consensus 174 ---------------~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 ---------------QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ---------------TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ---------------hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 222222 56666666666655544445677777777777766654 4667777777777766
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=185.69 Aligned_cols=234 Identities=19% Similarity=0.217 Sum_probs=157.9
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEE-eeCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLD-LVGC 126 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~-L~~c 126 (566)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|. .+.++++|++|+|++|.+.+.+|. |.++++++++. +.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56788888999999876 5799999999999999986 479999999999999998777764 78899988754 4555
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcc-----cCCCCEEecCCCCCccc
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEI-----SCNIEHLDLKETAIEEL 199 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~-----~~~L~~L~L~~~~i~~l 199 (566)
......+..|..+++|++|++++ +.++.+|... ...++..|++.++..+..++.. ...++.|++++|.|+++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 55555567789999999999998 5677777644 5667778888877666655532 12455566666666666
Q ss_pred CccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCC
Q 037314 200 PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNR 279 (566)
Q Consensus 200 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~ 279 (566)
|..+....+|+.|++.++..++.+|. +.|..+++|++|++++|.++.+|.. .+.+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~-----------------------~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~ 224 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPN-----------------------DVFHGASGPVILDISRTRIHSLPSY--GLEN 224 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCT-----------------------TTTTTEECCSEEECTTSCCCCCCSS--SCTT
T ss_pred ChhhccccchhHHhhccCCcccCCCH-----------------------HHhccCcccchhhcCCCCcCccChh--hhcc
Confidence 55544444455555544444444432 2345555555555555555555542 2445
Q ss_pred CCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccC
Q 037314 280 VESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDC 316 (566)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~ 316 (566)
|+.|.+.++..... +|.+..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~-----lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKK-----LPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCC-----CCCTTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCc-----CCCchhCcChhhCcCCCC
Confidence 55555555544332 555667777888877653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=4.3e-19 Score=174.84 Aligned_cols=210 Identities=21% Similarity=0.172 Sum_probs=137.5
Q ss_pred cceEEcCCCccCCCccceEEEeCCccCCCCCC-CC-CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCC
Q 037314 34 KYKVRHSRYLESLFNELRYFYWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIP 110 (566)
Q Consensus 34 ~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p 110 (566)
.....+|.. +|.+|++|++++|.++.++. .+ .+++|++|++++|+++.++. .+..+++|++|++++|.+....+
T Consensus 17 ~~l~~ip~~---l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 17 LNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SCCSSCCSS---SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccccCCC---CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 334456654 46689999999999999886 44 89999999999999998865 68999999999999999776665
Q ss_pred C-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEE
Q 037314 111 D-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHL 189 (566)
Q Consensus 111 ~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L 189 (566)
+ +..+++|++|++++|......+..++.+++|++|++++| .++.+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--------------------------------- 139 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSF--------------------------------- 139 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCC---------------------------------
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-cccee---------------------------------
Confidence 4 899999999999999876655556777777777777764 23221
Q ss_pred ecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCc----EEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 190 DLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLV----NLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 190 ~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
.+|..+..+++|++|++++|...+..+..+..+++|+ +|++++|...+..+..+ ...+|+.|++++|
T Consensus 140 --------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n 210 (276)
T 2z62_A 140 --------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN 210 (276)
T ss_dssp --------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSS
T ss_pred --------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCC
Confidence 1233344445555555555544443344444444444 56666654433222222 2335666666666
Q ss_pred cccccCcc-cccCCCCCEEEccCCC
Q 037314 266 AISQVPPS-IACLNRVESLSFDRCK 289 (566)
Q Consensus 266 ~l~~l~~~-l~~l~~L~~L~l~~~~ 289 (566)
.++.+|.. +..+++|+.|++++|.
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ceeecCHhHhcccccccEEEccCCc
Confidence 66655542 3445555555555444
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.7e-22 Score=218.45 Aligned_cols=392 Identities=14% Similarity=0.081 Sum_probs=216.8
Q ss_pred CHHHHhcCcCCcEEEEeecCCCCccceEEcCCC------------ccCCCccceEEEeCCccCCCCC-CCC--CCCCeEE
Q 037314 10 NPNTFTKMHRLRFFKFYNIFAGVNKYKVRHSRY------------LESLFNELRYFYWDGYPLKSLP-SKN--IPEHLVS 74 (566)
Q Consensus 10 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~------------l~~l~~~Lr~L~l~~~~l~~lp-~~~--~~~~L~~ 74 (566)
....+.++++|+.|++++++... . ....|.. ...++ +|+.|+++++.+.... ..+ .+++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~-~-~~l~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFA-D-FNLVPDGWGGYVYPWIEAMSSSYT-WLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGG-G-GTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred HHHHHhhCCCceEEeccCCCchh-h-cccccccccchhhHHHHHHHHhCC-CCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 45788999999999999842110 0 0111111 23444 8999999998765321 122 5789999
Q ss_pred EEcCCC-CCcc--ccccCCCCCCCcEEecCCCCCCCCC----CC-CCCCCCccEEEeeCCC--Cc-cccchhhhhcccCc
Q 037314 75 LEMPHS-NIEQ--LWNGVQNLAALKRLNLSYSKQLSRI----PD-ISLAFNIERLDLVGCA--SL-IETHSSIQHLNKLV 143 (566)
Q Consensus 75 L~L~~~-~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~----p~-l~~l~~L~~L~L~~c~--~~-~~~~~~~~~l~~L~ 143 (566)
|++++| .++. ++.....+++|++|+|++|.+.... +. ...+++|++|++++|. .. ..+...+..+++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999998 5654 5555568999999999999844322 22 2367899999999986 11 11223345679999
Q ss_pred EEecCCCCCCCccCCcC-CCCCccEEEecCCCCC------CcCC---cccCCCCEE-ecCCCCCcccCccccCCCCCcEE
Q 037314 144 FLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNL------KRFP---EISCNIEHL-DLKETAIEELPSSIGNLSRLVHL 212 (566)
Q Consensus 144 ~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l------~~~~---~~~~~L~~L-~L~~~~i~~lp~~~~~l~~L~~L 212 (566)
+|++++|..++.+|..+ .+++|+.|+++.+... ..++ ....+|+.| .+.......++..+..+++|++|
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE
Confidence 99999987777766655 7889999987765420 0111 112345555 33333334455545556666777
Q ss_pred eccCCCCccc-ccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC---------Cccccc--cCcccccCCCC
Q 037314 213 DLTNCSRLKS-VSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN---------ETAISQ--VPPSIACLNRV 280 (566)
Q Consensus 213 ~L~~~~~l~~-lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~---------~n~l~~--l~~~l~~l~~L 280 (566)
++++|..... ++..+..+++|++|++++|.....++.....+++|+.|++. .+.++. +......+++|
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 7766653221 22234456666666666652211222223345666666652 223321 11112235666
Q ss_pred CEEEccCCCCCCCCCCCCcccc-cCCCCCcEEecc--c----CCCcccCC------CCCCCCCCCEEeccCCCCe-ecCc
Q 037314 281 ESLSFDRCKGRPPLMSLKLPIL-FQLQNLEYLSLV--D----CGITELPE------SLGRSPSLNYLNLAENDFE-KIPS 346 (566)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~-~~l~~L~~L~L~--~----~~l~~lp~------~l~~l~~L~~L~Ls~n~l~-~lp~ 346 (566)
+.|.+..+.... ..+..+ ..+++|+.|+++ + +.+++.|. .+..+++|+.|+|++ .++ ..+.
T Consensus 375 ~~L~~~~~~l~~----~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 375 ESVLYFCRQMTN----AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CEEEEEESCCCH----HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred HHHHHhcCCcCH----HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 666554443211 111112 245666666666 2 33442221 134556666777655 333 2222
Q ss_pred chhc-CCCCcEecccccccCCc-C----CCCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCCCC
Q 037314 347 SIKQ-LSKLLFLTLRNCKRLQS-L----PELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNCFK 412 (566)
Q Consensus 347 ~i~~-l~~L~~L~L~~c~~L~~-l----p~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C~~ 412 (566)
.+.. +++|+.|+|++|..... + ..+|.++.|++.+|+- .... ... .....+.++.+++.+|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~-~~~-~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKA-LLA-NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHH-HHH-TGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHH-HHH-HHHhCCCCCEEeeeCCCC
Confidence 3333 66667777766652111 1 1245566666666653 1111 000 112345678888888865
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=6.5e-19 Score=174.83 Aligned_cols=155 Identities=26% Similarity=0.341 Sum_probs=119.9
Q ss_pred CCCEEecCCCCCcccC-ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 185 NIEHLDLKETAIEELP-SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
+++.|++++|.+..++ ..+..+++|++|++++|.... ++.. ..+++|++|++++|.. +.+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECC
Confidence 4555666666666553 457788888888888876544 3332 6788899999988754 4778888889999999999
Q ss_pred CccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCCCCCCCCEEeccCCCCe
Q 037314 264 ETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 264 ~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 342 (566)
+|.++.++.. .+..+++|++|++++|++..+|. .+..+++|+.|+|++|+++
T Consensus 109 ~N~l~~l~~~---------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 109 FNRLTSLPLG---------------------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SSCCCCCCSS---------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCcccCHH---------------------------HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9988877531 14456678888888888888764 4688999999999999999
Q ss_pred ecCcc-hhcCCCCcEecccccccCCcCCC
Q 037314 343 KIPSS-IKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 343 ~lp~~-i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
.+|.. +..+++|++|++++|+ ++.+|.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~-l~~ip~ 189 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENS-LYTIPK 189 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred ccCHHHhcCcCCCCEEECCCCc-CCccCh
Confidence 99876 5789999999999987 677774
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-18 Score=169.78 Aligned_cols=122 Identities=22% Similarity=0.208 Sum_probs=81.6
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
..+.++++++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|++++|.+....+. |..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 56778888888888886553 678888888888887764 577888888888888875543333 567788888888877
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGG 172 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~ 172 (566)
......+..+..+++|++|++++| .++.++... .+++|++|++++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC
Confidence 655544455667777777777763 344444322 344444444444
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.9e-18 Score=169.76 Aligned_cols=175 Identities=22% Similarity=0.339 Sum_probs=125.7
Q ss_pred CCCEEecCCCCCcccCc-cccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 185 NIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
++++|++++|.+..++. .+..+++|++|++++|......+..+.++++|++|++++|...+..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45666666666666664 56777777777777766554444455677777788777776655555566777778888888
Q ss_pred CccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCCCCCCCCEEeccCCCC
Q 037314 264 ETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLGRSPSLNYLNLAENDF 341 (566)
Q Consensus 264 ~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l 341 (566)
+|.++.++. .+..+++|++|++++|.... .....+..+++|++|++++|.+..++. .+..+++|++|+|++|.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS----LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCc----cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 877776654 45677788888887776432 111126677888888888888888764 478888899999999888
Q ss_pred eecCcc-hhcCCCCcEecccccc
Q 037314 342 EKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 342 ~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
+.+|.. +..+++|+.|++++|+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCHHHhccccCCCEEEecCCC
Confidence 888764 6778888888888886
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2.3e-19 Score=172.91 Aligned_cols=202 Identities=18% Similarity=0.250 Sum_probs=131.8
Q ss_pred CCcCCcccCCCCEEecCCCCCcccCc-cccCCCCCcEEeccCCCCccccc-ccccCCCCCcEEeccC-CcCCcccccccC
Q 037314 176 LKRFPEISCNIEHLDLKETAIEELPS-SIGNLSRLVHLDLTNCSRLKSVS-SSLCNLKSLVNLYLSG-CLKLEKLPEEIG 252 (566)
Q Consensus 176 l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~ls~-~~~l~~~p~~l~ 252 (566)
++.+|....++++|++++|.++.+|. .+..+++|++|++++|..++.++ ..+.++++|++|++++ |...+..+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 44444433356666666677777665 57777888888888776444444 4677778888888877 443333345677
Q ss_pred CCCccceeccCCccccccCcccccCCCCC---EEEccCCCCCCCCCCCCcccccCCCCCc-EEecccCCCcccCCCCCCC
Q 037314 253 NLESLEVMLANETAISQVPPSIACLNRVE---SLSFDRCKGRPPLMSLKLPILFQLQNLE-YLSLVDCGITELPESLGRS 328 (566)
Q Consensus 253 ~l~~L~~L~l~~n~l~~l~~~l~~l~~L~---~L~l~~~~~~~~~~~~~l~~~~~l~~L~-~L~L~~~~l~~lp~~l~~l 328 (566)
++++|+.|++++|.++.+|. +..+++|+ .|++++|.....+ ....+.++++|+ +|++++|++..+|......
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i---~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSI---PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEE---CTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhc---CcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 77888888888888777776 66677776 8888777222211 111266777888 8888888888777654444
Q ss_pred CCCCEEeccCCC-CeecCc-chhcC-CCCcEecccccccCCcCCC--CCCCCeEeecCC
Q 037314 329 PSLNYLNLAEND-FEKIPS-SIKQL-SKLLFLTLRNCKRLQSLPE--LPCGSTIFARHC 382 (566)
Q Consensus 329 ~~L~~L~Ls~n~-l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp~--lp~~~~L~~~~c 382 (566)
++|+.|++++|. ++.+|. .+..+ ++|+.|++++|+ ++.+|. ++.++.|.+.++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence 778888888884 777754 46777 788888888765 555653 333344444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.2e-19 Score=178.50 Aligned_cols=193 Identities=19% Similarity=0.170 Sum_probs=89.8
Q ss_pred EEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccc
Q 037314 52 YFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIE 131 (566)
Q Consensus 52 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~ 131 (566)
.+.+.++.+..+.....+++|+.|+++++.++.++ ++..+++|++|++++|.+. .++.++.+++|++|++++|.....
T Consensus 23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCC
T ss_pred HHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCcc
Confidence 33444444333333334555555555555555442 3455555555555555432 234455555555555555544333
Q ss_pred cchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcE
Q 037314 132 THSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVH 211 (566)
Q Consensus 132 ~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 211 (566)
.+..++.+++|++|++++| .++.+|.. .++.+++|++
T Consensus 101 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~------------------------------------------~~~~l~~L~~ 137 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN-QLQSLPDG------------------------------------------VFDKLTNLTY 137 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCCCTT------------------------------------------TTTTCTTCCE
T ss_pred ChhHhcCCcCCCEEECCCC-cCCccCHH------------------------------------------HhccCCCCCE
Confidence 3333444455555555442 22222221 1233344444
Q ss_pred EeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEEEccCCC
Q 037314 212 LDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCK 289 (566)
Q Consensus 212 L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~~~ 289 (566)
|++++|...+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 4444443332223334445555555555554443333444555555555555555554443 23445555555555543
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2e-21 Score=212.72 Aligned_cols=362 Identities=15% Similarity=0.149 Sum_probs=234.9
Q ss_pred HHhcCcCCcEEEEeecCCCCccceEEcCCCcc-CCCccceEEEeCCc-cCCC--CCCCC-CCCCeEEEEcCCCCCcc---
Q 037314 13 TFTKMHRLRFFKFYNIFAGVNKYKVRHSRYLE-SLFNELRYFYWDGY-PLKS--LPSKN-IPEHLVSLEMPHSNIEQ--- 84 (566)
Q Consensus 13 ~f~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~i~~--- 84 (566)
.+..+++|+.|+++++ ......+..+. .+| +|+.|++.+| .++. ++..+ .+++|++|++++|.++.
T Consensus 100 l~~~~~~L~~L~L~~~-----~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRM-----VVTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHHHCTTCCEEEEESC-----BCCHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HHHhCCCCCeEEeeCc-----EEcHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 3567889999999883 11111122222 354 8999999988 4443 44433 67899999999998664
Q ss_pred --ccccCCCCCCCcEEecCCCCCCCCCC-----C-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCC----
Q 037314 85 --LWNGVQNLAALKRLNLSYSKQLSRIP-----D-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCIS---- 152 (566)
Q Consensus 85 --l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~---- 152 (566)
++.....+++|+.|++++|. ..+. . +..+++|++|++++|.....++..+..+++|+.|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred HHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 33444578899999999886 2222 1 24468999999999976667888888999999999876542
Q ss_pred --CCccCCcC-CCCCccEE-EecCCCCCCcCCc---ccCCCCEEecCCCCCcc--cCccccCCCCCcEEeccCCCCcccc
Q 037314 153 --LKSLPTGI-NLDSLKVL-YLGGCSNLKRFPE---ISCNIEHLDLKETAIEE--LPSSIGNLSRLVHLDLTNCSRLKSV 223 (566)
Q Consensus 153 --l~~lp~~~-~l~~L~~L-~L~~~~~l~~~~~---~~~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~l 223 (566)
+..++..+ ++++|+.| .+.+.. ...++. ...+|++|++++|.+.. ++..+..+++|++|++++|.....+
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence 12233333 77888888 333321 123333 35689999999988663 3444678899999999987322233
Q ss_pred cccccCCCCCcEEeccCC--------cCCcc--cccccCCCCccceeccCCcccccc-Cccc-ccCCCCCEEEcc-----
Q 037314 224 SSSLCNLKSLVNLYLSGC--------LKLEK--LPEEIGNLESLEVMLANETAISQV-PPSI-ACLNRVESLSFD----- 286 (566)
Q Consensus 224 p~~l~~l~~L~~L~ls~~--------~~l~~--~p~~l~~l~~L~~L~l~~n~l~~l-~~~l-~~l~~L~~L~l~----- 286 (566)
+.....+++|++|++++| ..++. +......+++|+.|.+..+.++.. ...+ ..+++|+.|++.
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 333456889999999543 22221 111223478888888877777632 2233 358899999998
Q ss_pred CCCCCCCCC-CCCccc-ccCCCCCcEEecccCCCcc-cCCCCC-CCCCCCEEeccCCCCee-cCcch-hcCCCCcEeccc
Q 037314 287 RCKGRPPLM-SLKLPI-LFQLQNLEYLSLVDCGITE-LPESLG-RSPSLNYLNLAENDFEK-IPSSI-KQLSKLLFLTLR 360 (566)
Q Consensus 287 ~~~~~~~~~-~~~l~~-~~~l~~L~~L~L~~~~l~~-lp~~l~-~l~~L~~L~Ls~n~l~~-lp~~i-~~l~~L~~L~L~ 360 (566)
+|......+ ...++. +..+++|+.|++++ .+++ .+..++ .+++|+.|+|++|.++. .+..+ ..+++|++|+|+
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 343333211 011222 56788999999977 5554 222333 37889999999998752 22233 678999999999
Q ss_pred ccccCCc-----CCCCCCCCeEeecCCcC
Q 037314 361 NCKRLQS-----LPELPCGSTIFARHCTS 384 (566)
Q Consensus 361 ~c~~L~~-----lp~lp~~~~L~~~~c~~ 384 (566)
+|+.... +..+|.++.|++.+|+.
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9985211 12367778999999865
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.2e-20 Score=191.28 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=114.9
Q ss_pred CCCeEEEEcCCCCCccccccCCCC--CCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccc-cchhhhhcccCcEE
Q 037314 69 PEHLVSLEMPHSNIEQLWNGVQNL--AALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIE-THSSIQHLNKLVFL 145 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~-~~~~~~~l~~L~~L 145 (566)
+..++.++++++++. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 345778888887776 3445555 788888888888777777777788888888888875544 66777888888888
Q ss_pred ecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCC-CCccc-
Q 037314 146 NLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNC-SRLKS- 222 (566)
Q Consensus 146 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~-~~l~~- 222 (566)
++++|......+..+ .+++|++|++++|..++. ..++..+..+++|++|++++| .....
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------FALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------------------HHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH------------------HHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 888864322333333 466666666666533221 012333444555555555555 32221
Q ss_pred ccccccCCC-CCcEEeccCCc--CC-cccccccCCCCccceeccCCcc-cc-ccCcccccCCCCCEEEccCCC
Q 037314 223 VSSSLCNLK-SLVNLYLSGCL--KL-EKLPEEIGNLESLEVMLANETA-IS-QVPPSIACLNRVESLSFDRCK 289 (566)
Q Consensus 223 lp~~l~~l~-~L~~L~ls~~~--~l-~~~p~~l~~l~~L~~L~l~~n~-l~-~l~~~l~~l~~L~~L~l~~~~ 289 (566)
++..+..++ +|++|++++|. .. +.++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|.
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 344455555 55666655553 11 2233344444445555554444 22 233334444444444444443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2e-20 Score=189.65 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=114.7
Q ss_pred cceEEEeCCccCCCCCCCC-CC--CCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCC-CCC-CCCCCCccEEEe
Q 037314 49 ELRYFYWDGYPLKSLPSKN-IP--EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSR-IPD-ISLAFNIERLDL 123 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~-~~--~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L 123 (566)
.++.++++++.+. |..+ .+ .+++.|+++++.+...+..+..+++|++|++++|.+... ++. +..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3556666655443 1111 22 566666666666665555555666677777766654332 333 556667777777
Q ss_pred eCCCCccccchhhhhcccCcEEecCCCCCCCc--cCCcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccC
Q 037314 124 VGCASLIETHSSIQHLNKLVFLNLGHCISLKS--LPTGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 124 ~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp 200 (566)
++|......+..++.+++|++|++++|..++. ++..+ .+++|++|++++|..++.. .++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------~~~ 187 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------HVQ 187 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------HHH
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------HHH
Confidence 76665555566666677777777776644442 44333 5566666666665322210 122
Q ss_pred ccccCCC-CCcEEeccCCC--Cc-ccccccccCCCCCcEEeccCCc-CCcccccccCCCCccceeccCCcc-cc-ccCcc
Q 037314 201 SSIGNLS-RLVHLDLTNCS--RL-KSVSSSLCNLKSLVNLYLSGCL-KLEKLPEEIGNLESLEVMLANETA-IS-QVPPS 273 (566)
Q Consensus 201 ~~~~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~~L~~L~ls~~~-~l~~~p~~l~~l~~L~~L~l~~n~-l~-~l~~~ 273 (566)
..+..++ +|++|++++|. .. ..+|..+.++++|++|++++|. .....+..+..+++|+.|++++|. +. .....
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 2233444 55555555542 11 2334444455555555555555 223344445555555555555553 11 11113
Q ss_pred cccCCCCCEEEccCC
Q 037314 274 IACLNRVESLSFDRC 288 (566)
Q Consensus 274 l~~l~~L~~L~l~~~ 288 (566)
+..+++|+.|++++|
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 445566666666655
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3.1e-18 Score=168.36 Aligned_cols=202 Identities=21% Similarity=0.204 Sum_probs=140.4
Q ss_pred cCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEE
Q 037314 44 ESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLD 122 (566)
Q Consensus 44 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 122 (566)
..+ ++|+.|++.++.++.++....+++|++|++++|+++.++ .+..+++|++|++++|.+....+. ++.+++|++|+
T Consensus 38 ~~l-~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NEL-NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHH-TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccc-cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 344 479999999999988887668899999999999998864 788899999999999986655554 78899999999
Q ss_pred eeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccC
Q 037314 123 LVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 123 L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp 200 (566)
+++|......+..++.+++|++|++++| .++.+|... .+++|++|++++|.. ..+|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l---------------------~~~~ 173 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL---------------------QSLP 173 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC---------------------CCCC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc---------------------CccC
Confidence 9999877666667888999999999885 566666543 677777777776543 3333
Q ss_pred cc-ccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc-ccCccccc
Q 037314 201 SS-IGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS-QVPPSIAC 276 (566)
Q Consensus 201 ~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~-~l~~~l~~ 276 (566)
.. ++.+++|++|++++|...+..+..+..+++|++|++++|.... .+++|+.+++..|.+. .+|..++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 22 3455556666666555554444445556666666666654332 2345555665555554 44554443
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=9.2e-19 Score=168.63 Aligned_cols=203 Identities=17% Similarity=0.268 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeC-CCCccccchh
Q 037314 60 LKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVG-CASLIETHSS 135 (566)
Q Consensus 60 l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~-c~~~~~~~~~ 135 (566)
++++|. -+.+|++|++++|+++.++. .+..+++|++|++++|..++.++ .|..+++|++|++++ |......+..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 777887 45588899999999888876 67888889999998886344443 377888888888887 5544444456
Q ss_pred hhhcccCcEEecCCCCCCCccCCcCCCCCcc---EEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc-cccCCCCCc-
Q 037314 136 IQHLNKLVFLNLGHCISLKSLPTGINLDSLK---VLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS-SIGNLSRLV- 210 (566)
Q Consensus 136 ~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~- 210 (566)
+..+++|++|++++| .++.+|....+++|+ +|++++|. .++.+|. .+..+++|+
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~--------------------~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNP--------------------YMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCT--------------------TCCEECTTTTTTTBSSEE
T ss_pred hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCc--------------------chhhcCcccccchhccee
Confidence 778888888888874 466677633555555 66666552 3334443 255666666
Q ss_pred EEeccCCCCcccccccccCCCCCcEEeccCCcCCccc-ccccCCC-CccceeccCCccccccCcccccCCCCCEEEccCC
Q 037314 211 HLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKL-PEEIGNL-ESLEVMLANETAISQVPPSIACLNRVESLSFDRC 288 (566)
Q Consensus 211 ~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~-p~~l~~l-~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~ 288 (566)
.|++++|... .+|......++|++|++++|..++.+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++
T Consensus 160 ~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 6666665544 44433333366777777776433333 4556666 7777777777777776654 4566666666554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2e-18 Score=172.89 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCC
Q 037314 92 LAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGH 149 (566)
Q Consensus 92 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~ 149 (566)
+++|+.|++++|.+ ..+|.+..+++|++|++++|.... ++. +..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSG 94 (308)
T ss_dssp HHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCS
T ss_pred cCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccC
Confidence 44445555544432 223344444445555554443322 222 44445555555544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.8e-18 Score=171.82 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=117.6
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCAS 128 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 128 (566)
+|+.|++.++.++++|....+++|++|++++|+++.++. +..+++|++|++++|. +..++.+..+++|++|++++|..
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCC
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCC
Confidence 677777777777777644467777777777777777665 6777777777777776 33455666777777777777654
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSR 208 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 208 (566)
.. ++ .+..+++|++|++++| .++.++....+++|++| ++++|.+..++. +..+++
T Consensus 120 ~~-~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L---------------------~l~~n~l~~~~~-l~~l~~ 174 (308)
T 1h6u_A 120 TD-VT-PLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYL---------------------SIGNAQVSDLTP-LANLSK 174 (308)
T ss_dssp CC-CG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEE---------------------ECCSSCCCCCGG-GTTCTT
T ss_pred CC-ch-hhcCCCCCCEEECCCC-ccCcCccccCCCCccEE---------------------EccCCcCCCChh-hcCCCC
Confidence 43 22 2666666666666663 34444432234444444 444444454444 566666
Q ss_pred CcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc
Q 037314 209 LVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP 272 (566)
Q Consensus 209 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~ 272 (566)
|+.|++++|..... +. +..+++|++|++++|...+.. .+..+++|+.|++++|.++..|.
T Consensus 175 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 175 LTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 77777766654332 22 566666777777666544332 25666666677766666665544
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.2e-18 Score=175.87 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=121.8
Q ss_pred EEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCCccccch-hhhhcccCcEEecCCC
Q 037314 73 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCASLIETHS-SIQHLNKLVFLNLGHC 150 (566)
Q Consensus 73 ~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~-~~~~l~~L~~L~L~~c 150 (566)
++++.++++++++|.++ .+++++|+|++|.+....++ |+++++|++|+|++|...+.++. .|.++++|+.+...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 35677778888888766 35788888888875433333 77788888888888776665543 4566666665544444
Q ss_pred CCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCccccccccc
Q 037314 151 ISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLC 228 (566)
Q Consensus 151 ~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 228 (566)
+.++.++... .+++|++|++++| ......+..+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~ 125 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNT--------------------------------------------GIKHLPDVHKI 125 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEE--------------------------------------------CCSSCCCCTTC
T ss_pred CcccccCchhhhhcccccccccccc--------------------------------------------ccccCCchhhc
Confidence 5565554332 4444554444443 22222222233
Q ss_pred CCCCCcEEeccCCcCCccccc-ccCCC-CccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc--ccC
Q 037314 229 NLKSLVNLYLSGCLKLEKLPE-EIGNL-ESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI--LFQ 304 (566)
Q Consensus 229 ~l~~L~~L~ls~~~~l~~~p~-~l~~l-~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~--~~~ 304 (566)
...++..|++.++..+..++. .+..+ ..++.|++++|.++.++.......+|++|.+.++..... +|. +.+
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~-----i~~~~f~~ 200 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-----LPNDVFHG 200 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC-----CCTTTTTT
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccC-----CCHHHhcc
Confidence 334455555555444444432 33333 346677777777777766554444455554443332222 111 333
Q ss_pred CCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCC-CeecCcchhcCCCCcEeccc
Q 037314 305 LQNLEYLSLVDCGITELPESLGRSPSLNYLNLAEND-FEKIPSSIKQLSKLLFLTLR 360 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~i~~l~~L~~L~L~ 360 (566)
+++|++|++++|+++.+|.. .+.+|+.|.+.++. ++.+| .+..+++|+.+++.
T Consensus 201 l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred CcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 44444444444444444431 13344444433332 34444 24444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=4.9e-18 Score=170.28 Aligned_cols=229 Identities=17% Similarity=0.134 Sum_probs=139.2
Q ss_pred CCCccEEEeeCCCCccccc---hhhhhcccCcEEecCCCCCCCccCCc---CCCCCccEEEecCCCCCCcCCcccCCCCE
Q 037314 115 AFNIERLDLVGCASLIETH---SSIQHLNKLVFLNLGHCISLKSLPTG---INLDSLKVLYLGGCSNLKRFPEISCNIEH 188 (566)
Q Consensus 115 l~~L~~L~L~~c~~~~~~~---~~~~~l~~L~~L~L~~c~~l~~lp~~---~~l~~L~~L~L~~~~~l~~~~~~~~~L~~ 188 (566)
...++.+.+.++......- ..+..+++|++|++++|......|.. ..+++|++|++++|......+...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----- 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----- 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-----
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-----
Confidence 3456777777765433211 11233466888888776555555554 246666666666655433222100
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcc--c--ccccCCCCccceeccCC
Q 037314 189 LDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEK--L--PEEIGNLESLEVMLANE 264 (566)
Q Consensus 189 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~--~--p~~l~~l~~L~~L~l~~ 264 (566)
...+..+++|++|++++|......+..+.++++|++|++++|...+. + +..+..+++|++|++++
T Consensus 138 -----------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 138 -----------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp -----------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred -----------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 01123455666666666655555555566666666666666654432 1 12235566677777777
Q ss_pred ccccccCcc----cccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCC
Q 037314 265 TAISQVPPS----IACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAEND 340 (566)
Q Consensus 265 n~l~~l~~~----l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~ 340 (566)
|.++.++.. +..+++|++|++++|......+ ..+..+..+++|++|++++|+++.+|..+. ++|++|+|++|+
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc
Confidence 766655442 3556777777777776433211 001112233689999999999998888774 799999999999
Q ss_pred CeecCcchhcCCCCcEecccccc
Q 037314 341 FEKIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 341 l~~lp~~i~~l~~L~~L~L~~c~ 363 (566)
++.+|. +..+++|+.|++++|+
T Consensus 284 l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 284 LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCCch-hhhCCCccEEECcCCC
Confidence 998875 6788999999999887
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=170.14 Aligned_cols=225 Identities=14% Similarity=0.103 Sum_probs=135.0
Q ss_pred CCCCeEEEEcCCCCCcc--ccc--cCCCCCCCcEEecCCCCCCCCCCC-C--CCCCCccEEEeeCCCCccccc----hhh
Q 037314 68 IPEHLVSLEMPHSNIEQ--LWN--GVQNLAALKRLNLSYSKQLSRIPD-I--SLAFNIERLDLVGCASLIETH----SSI 136 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~c~~~~~~~----~~~ 136 (566)
....++.|.+.++.+.. +.. ....+++|++|++++|.+....|. + ..+++|++|+|++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34457778888777652 211 122446688889988887766665 4 788888888888887766443 334
Q ss_pred hhcccCcEEecCCCCCCCccC-CcC-CCCCccEEEecCCCCCCc--CCcccCCCCEEecCCCCCcccCccccCCCCCcEE
Q 037314 137 QHLNKLVFLNLGHCISLKSLP-TGI-NLDSLKVLYLGGCSNLKR--FPEISCNIEHLDLKETAIEELPSSIGNLSRLVHL 212 (566)
Q Consensus 137 ~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~--~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 212 (566)
..+++|++|++++|. +..++ ..+ .+++|++|++++|...+. ++ .+..++.+++|++|
T Consensus 142 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------~~~~~~~l~~L~~L 202 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLM------------------AALCPHKFPAIQNL 202 (310)
T ss_dssp TBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH------------------TTSCTTSSCCCCSC
T ss_pred hhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhh------------------HHHhhhcCCCCCEE
Confidence 568888888888854 44444 333 677777777777654321 10 01112344555555
Q ss_pred eccCCCCcccccc----cccCCCCCcEEeccCCcCCcccccccCCC---CccceeccCCccccccCcccccCCCCCEEEc
Q 037314 213 DLTNCSRLKSVSS----SLCNLKSLVNLYLSGCLKLEKLPEEIGNL---ESLEVMLANETAISQVPPSIACLNRVESLSF 285 (566)
Q Consensus 213 ~L~~~~~l~~lp~----~l~~l~~L~~L~ls~~~~l~~~p~~l~~l---~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 285 (566)
++++|... .++. .+..+++|++|++++|...+..|..+..+ ++|+.|++++|.++.+|..+. ++|++|++
T Consensus 203 ~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL 279 (310)
T ss_dssp BCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred ECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence 55555432 2221 13455666666666665555545555444 466666666666666666553 56677777
Q ss_pred cCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc
Q 037314 286 DRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE 320 (566)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~ 320 (566)
++|.... +|.+..+++|+.|++++|.+++
T Consensus 280 s~N~l~~------~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR------APQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS------CCCTTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC------CchhhhCCCccEEECcCCCCCC
Confidence 6666432 2334566777777777777653
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.2e-17 Score=160.16 Aligned_cols=173 Identities=18% Similarity=0.259 Sum_probs=129.4
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
+.++++++++.+.++|..+. +.++.|++++|...+..+..+.++++|++|++++|...+..+..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34566777777777776554 5777777777776666666677777777777777776666666677777788888887
Q ss_pred ccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC-CCCCCCCCCEEeccCCCCe
Q 037314 265 TAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE-SLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 265 n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 342 (566)
|.++.++. .+..+++|++|++++|....- ....+..+++|++|++++|++..+|. .++.+++|++|+|++|.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 77776654 456777888888877764321 11125678889999999999998775 6888999999999999998
Q ss_pred ecCc-chhcCCCCcEecccccc
Q 037314 343 KIPS-SIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 343 ~lp~-~i~~l~~L~~L~L~~c~ 363 (566)
.+|. .+..+++|+.|++++|+
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 8775 57888999999999887
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=5.8e-20 Score=190.19 Aligned_cols=62 Identities=29% Similarity=0.448 Sum_probs=43.5
Q ss_pred ccCCCCCcEEecccCCCcc-----cCCCC--CCCCCCCEEeccCCCCee-----cCcch-hcCCCCcEecccccc
Q 037314 302 LFQLQNLEYLSLVDCGITE-----LPESL--GRSPSLNYLNLAENDFEK-----IPSSI-KQLSKLLFLTLRNCK 363 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~-----lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c~ 363 (566)
+..+++|++|+|++|.++. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|+
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4556667777777776665 34444 347788888888888776 77776 557888888888876
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.6e-19 Score=186.85 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=103.9
Q ss_pred cceEEEeCCccCCCCCCCC-CCCCeEEEEcCCCCCcc-----ccccCCCCCCCcEEecCCCCCC---CCCCC--------
Q 037314 49 ELRYFYWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQ-----LWNGVQNLAALKRLNLSYSKQL---SRIPD-------- 111 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~l---~~~p~-------- 111 (566)
.|++..+....++.++..+ .+++|++|++++|++.. +...+..+++|++|+|++|... ..+|.
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444455555444 56677788888777763 3445677778888888776422 22331
Q ss_pred CCCCCCccEEEeeCCCCcc----ccchhhhhcccCcEEecCCCCCCC----ccCCcC-CC---------CCccEEEecCC
Q 037314 112 ISLAFNIERLDLVGCASLI----ETHSSIQHLNKLVFLNLGHCISLK----SLPTGI-NL---------DSLKVLYLGGC 173 (566)
Q Consensus 112 l~~l~~L~~L~L~~c~~~~----~~~~~~~~l~~L~~L~L~~c~~l~----~lp~~~-~l---------~~L~~L~L~~~ 173 (566)
+..+++|++|+|++|.... .++..+..+++|++|+|++|.... .++..+ .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 2567777888887776655 356667777788888887754311 111111 12 56666666665
Q ss_pred CCC-CcCCc------ccCCCCEEecCCCCCc------ccCccccCCCCCcEEeccCCCCc----ccccccccCCCCCcEE
Q 037314 174 SNL-KRFPE------ISCNIEHLDLKETAIE------ELPSSIGNLSRLVHLDLTNCSRL----KSVSSSLCNLKSLVNL 236 (566)
Q Consensus 174 ~~l-~~~~~------~~~~L~~L~L~~~~i~------~lp~~~~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L 236 (566)
... ..++. ...+|++|++++|.+. -+|..+..+++|++|++++|... ..+|..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 433 12221 1224444444444444 12224444555555555554432 3344444445555555
Q ss_pred eccCCcC
Q 037314 237 YLSGCLK 243 (566)
Q Consensus 237 ~ls~~~~ 243 (566)
++++|..
T Consensus 250 ~L~~n~i 256 (386)
T 2ca6_A 250 GLNDCLL 256 (386)
T ss_dssp ECTTCCC
T ss_pred ECCCCCC
Confidence 5555443
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=4.4e-19 Score=181.95 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=37.9
Q ss_pred EEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCC-----CCCCCC-CccEEEeeCCCCccccchhhhhc-----ccC
Q 037314 75 LEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIP-----DISLAF-NIERLDLVGCASLIETHSSIQHL-----NKL 142 (566)
Q Consensus 75 L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~-~L~~L~L~~c~~~~~~~~~~~~l-----~~L 142 (566)
++++++++... |..+...++|++|+|++|.+....+ .+..++ +|++|+|++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44555555533 3333334446666666655433332 144445 56666666655544444444443 556
Q ss_pred cEEecCCC
Q 037314 143 VFLNLGHC 150 (566)
Q Consensus 143 ~~L~L~~c 150 (566)
++|++++|
T Consensus 83 ~~L~Ls~n 90 (362)
T 3goz_A 83 TSLNLSGN 90 (362)
T ss_dssp CEEECCSS
T ss_pred cEEECcCC
Confidence 66666553
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.9e-16 Score=153.66 Aligned_cols=173 Identities=24% Similarity=0.289 Sum_probs=112.4
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
..+.++++++.++++|..+. ++++.|++++|+++.++. .+..+++|++|+|++|.+....+. +..+++|++|+|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 56778888888888887654 678888888888887654 577888888888888876655554 677778888888777
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCc-cc
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPS-SI 203 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~ 203 (566)
......+..+..+++|++|++++| .++.+|... .+++|++| ++++|.+..+|. .+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L---------------------~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKEL---------------------RLNTNQLQSIPAGAF 151 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE---------------------ECCSSCCCCCCTTTT
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEE---------------------ECcCCcCCccCHHHc
Confidence 766555556677777777777763 455555432 33333333 333344445544 35
Q ss_pred cCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCC
Q 037314 204 GNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKL 244 (566)
Q Consensus 204 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l 244 (566)
+.+++|++|++++|......+..+..+++|++|++++|...
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 66666666666666555444445566666666666665543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.6e-17 Score=174.19 Aligned_cols=184 Identities=19% Similarity=0.286 Sum_probs=78.7
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCAS 128 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 128 (566)
+++.|+++++.++.+|..+ +++|++|++++|+|+.+| ..+++|++|+|++|.+.. +|.+.. +|++|+|++|..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence 3444444444444444433 244444444444444444 224444444444444332 333222 444444444433
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSR 208 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 208 (566)
.+ +|. .+++|+.|++++ +.++.+|. .+++|++|++++|.. +.+|....+|++|+|++|.|+.+|. +.. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~L-~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp SC-CCC---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCC-CC----
T ss_pred CC-CCC---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCCCC-CCcchhhCCCCEEECcCCCCCchhh-HHH--h
Confidence 32 332 344444444444 23333443 344444444444432 2233322344555555555555444 322 3
Q ss_pred C-------cEEeccCCCCcccccccccCCCCCcEEeccCCcCCccccccc
Q 037314 209 L-------VHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEI 251 (566)
Q Consensus 209 L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l 251 (566)
| +.|++++|... .+|..+..+++|+.|++++|...+.+|..+
T Consensus 202 L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 4 55555544322 344444445555555555554444444433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.1e-16 Score=172.45 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=163.9
Q ss_pred HHHHhcCc-----CCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc
Q 037314 11 PNTFTKMH-----RLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL 85 (566)
Q Consensus 11 ~~~f~~m~-----~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l 85 (566)
..+|.+++ +|+.|+++++ .. ..+|..+ +++|++|++++|.++.+| ..+++|++|++++|+|+.+
T Consensus 47 ~~~~~~l~~C~~~~L~~L~Ls~n-----~L-~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~i 115 (571)
T 3cvr_A 47 NEAVSLLKECLINQFSELQLNRL-----NL-SSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTL 115 (571)
T ss_dssp HHHHHHHHHHHHTTCSEEECCSS-----CC-SCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCC
T ss_pred cchhhhccccccCCccEEEeCCC-----CC-CccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCc
Confidence 34788887 9999999983 22 2366654 358999999999999999 4578999999999999999
Q ss_pred cccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCc
Q 037314 86 WNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSL 165 (566)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L 165 (566)
|. +.. +|++|+|++|.+.. +|. .+++|++|++++|...+ +|. .+++|++|++++| .++.+|. +. ++|
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L 182 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESL 182 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCCC-CC-TTC
T ss_pred ch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC-CCCCcch-hh-CCC
Confidence 88 655 99999999998655 777 78999999999998665 665 6789999999995 6777998 65 999
Q ss_pred cEEEecCCCCCCcCCcccCCC-------CEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCC
Q 037314 166 KVLYLGGCSNLKRFPEISCNI-------EHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKS 232 (566)
Q Consensus 166 ~~L~L~~~~~l~~~~~~~~~L-------~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 232 (566)
+.|++++|. ++.+|....+| +.|+|++|.|+.+|..+..+++|+.|++++|...+..|..+..+++
T Consensus 183 ~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 183 EALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CEEECCSSC-CSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CEEECcCCC-CCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999999985 55777744578 9999999999999999999999999999999999988887766543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.1e-16 Score=156.80 Aligned_cols=165 Identities=24% Similarity=0.321 Sum_probs=125.2
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
++++|+++++.+..++. +..+++|++|++++|...+..+ +.++++|++|++++|...+ ++ .+..+++|+.|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 44555555555555543 6667777777777765544333 6777777777777765433 33 377788888888888
Q ss_pred ccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeec
Q 037314 265 TAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 265 n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 344 (566)
|.++.++ .+..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.+
T Consensus 122 n~i~~~~-~l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 122 NGISDIN-GLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp SCCCCCG-GGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CcCCCCh-hhcCCCCCCEEEccCCcCCc------chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 8887763 57778888888888887443 3557888999999999999998776 88999999999999999998
Q ss_pred CcchhcCCCCcEecccccc
Q 037314 345 PSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 345 p~~i~~l~~L~~L~L~~c~ 363 (566)
|. +..+++|+.|++++|+
T Consensus 194 ~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCc
Confidence 75 8899999999999987
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=6.8e-18 Score=173.08 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=104.6
Q ss_pred EEeCCccCCCCCCCC--CCCCeEEEEcCCCCCcccc-----ccCCCCC-CCcEEecCCCCCCCCCCC-CCCC-----CCc
Q 037314 53 FYWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLW-----NGVQNLA-ALKRLNLSYSKQLSRIPD-ISLA-----FNI 118 (566)
Q Consensus 53 L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~-l~~l-----~~L 118 (566)
++++.+.+....+.+ .+++|++|++++|+++..+ ..+..++ +|++|+|++|.+....+. +..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344445444333222 3444677777777666543 4556666 677777777765444332 3332 677
Q ss_pred cEEEeeCCCCccccchhhhh----c-ccCcEEecCCCCCCCccCCcC------C-CCCccEEEecCCCCCCcCC----cc
Q 037314 119 ERLDLVGCASLIETHSSIQH----L-NKLVFLNLGHCISLKSLPTGI------N-LDSLKVLYLGGCSNLKRFP----EI 182 (566)
Q Consensus 119 ~~L~L~~c~~~~~~~~~~~~----l-~~L~~L~L~~c~~l~~lp~~~------~-l~~L~~L~L~~~~~l~~~~----~~ 182 (566)
++|+|++|......+..+.. + ++|++|++++|. ++..+... . .++|++|++++|......+ ..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 77777777655444443333 3 677777777643 44333211 1 2466666666654332111 10
Q ss_pred ----cCCCCEEecCCCCCcccCc-----cccCC-CCCcEEeccCCCCcc----cccccccC-CCCCcEEeccCCcCCccc
Q 037314 183 ----SCNIEHLDLKETAIEELPS-----SIGNL-SRLVHLDLTNCSRLK----SVSSSLCN-LKSLVNLYLSGCLKLEKL 247 (566)
Q Consensus 183 ----~~~L~~L~L~~~~i~~lp~-----~~~~l-~~L~~L~L~~~~~l~----~lp~~l~~-l~~L~~L~ls~~~~l~~~ 247 (566)
..+|++|++++|.+..... .+..+ ++|++|++++|.... .++..+.. .++|++|++++|.....-
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 1245555555555543332 23333 355666665554332 13333333 235555555555443321
Q ss_pred c----cccCCCCccceeccCCcc
Q 037314 248 P----EEIGNLESLEVMLANETA 266 (566)
Q Consensus 248 p----~~l~~l~~L~~L~l~~n~ 266 (566)
+ ..+..+++|+.|++++|.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCC
Confidence 1 223444455555555554
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=7.1e-16 Score=143.75 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=91.0
Q ss_pred CCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 184 CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 184 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
.++++|+++++.+..+| .+..+++|++|++++| ....++ .+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 35566666666677777 5777788888888877 333333 57777888888888877666667777777777777777
Q ss_pred Cccccc-cCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCC
Q 037314 264 ETAISQ-VPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDF 341 (566)
Q Consensus 264 ~n~l~~-l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l 341 (566)
+|.++. .+..+..+++|++|++++|..... ++.+..+++|++|++++|.+.+++ .+..+++|+.|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-----IMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----CGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-----cHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 777764 445555566666666655542222 233445555555555555555544 444455555555555544
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.8e-15 Score=149.98 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=97.1
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccc
Q 037314 189 LDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAIS 268 (566)
Q Consensus 189 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~ 268 (566)
|++++|.+..++. +..+++|++|++++|.... ++ .+..+++|++|++++|...+ + ..+..+++|+.|++++|.++
T Consensus 73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC
T ss_pred EEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC
Confidence 3333344444444 5555666666666554332 33 25666666666666665433 2 34566677777777777777
Q ss_pred ccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecCc
Q 037314 269 QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIPS 346 (566)
Q Consensus 269 ~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 346 (566)
.+ ..+..+++|+.|++++|.... ++.+..+++|+.|++++|.+++++. +..+++|+.|++++|.+...|.
T Consensus 148 ~~-~~l~~l~~L~~L~L~~N~l~~------~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 148 DI-TVLSRLTKLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCC------CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred cc-hhhccCCCCCEEEccCCcccc------chhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 66 457777888888888776433 2337788899999999999998865 8889999999999999887663
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.7e-15 Score=141.01 Aligned_cols=174 Identities=21% Similarity=0.213 Sum_probs=101.7
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccccc-CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCAS 128 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 128 (566)
+.++..++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|++|++++|..
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45566666677777544 45777777777777766543 56777777777777765533333 56677777777777765
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCcc-ccC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSS-IGN 205 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~ 205 (566)
....+..+..+++|++|++++| .++.+|... .+++|++|++++ |.+..+|.. +..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~---------------------N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ---------------------NQLKSVPDGVFDR 146 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---------------------SCCSCCCTTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC---------------------CccceeCHHHhcc
Confidence 5444444566777777777663 444444422 344444444443 334444433 455
Q ss_pred CCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCC
Q 037314 206 LSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNL 254 (566)
Q Consensus 206 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l 254 (566)
+++|++|++++|... +.+++|+.|++++|...+.+|..++.+
T Consensus 147 l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 666666666665332 234456666666665555555554444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2.3e-15 Score=163.78 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=91.9
Q ss_pred CCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 186 IEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 186 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
|+.|+++++.+..+| .+..+++|+.|+|++|......| +..+++|+.|+|++|.... ++ .+..+++|+.|++++|
T Consensus 45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTS
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCC
Confidence 344444444444444 25555566666665554433222 5555666666666554322 22 4555666666666666
Q ss_pred cccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeecC
Q 037314 266 AISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKIP 345 (566)
Q Consensus 266 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 345 (566)
.+..++ .+..+++|+.|++++|.... ++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++.+|
T Consensus 120 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 120 GISDIN-GLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CCCCCG-GGGGCTTCSEEECCSSCCCC------CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCc-cccCCCccCEEECCCCccCC------chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 665543 35556666666666665322 2345566666666666666666544 666666666666666666654
Q ss_pred cchhcCCCCcEecccccc
Q 037314 346 SSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 346 ~~i~~l~~L~~L~L~~c~ 363 (566)
.+..+++|+.|+|++|+
T Consensus 192 -~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGTTCTTCSEEECCSEE
T ss_pred -HHccCCCCCEEEccCCc
Confidence 45666666666666665
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=3.5e-15 Score=142.57 Aligned_cols=150 Identities=22% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
..+.++.+++.+..+|..+. ++|++|++++|...+..|..+.++++|++|++++|......+..+..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45667777778888887554 6777777777776666666677777777777777665333334456666666666666
Q ss_pred ccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeec
Q 037314 265 TAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 265 n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 344 (566)
|.++.++... +..+++|++|++++|++..+|..+..+++|+.|+|++|.++.+
T Consensus 98 N~l~~l~~~~---------------------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 98 NQLTVLPSAV---------------------------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SCCCCCCTTT---------------------------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCccChhH---------------------------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc
Confidence 6666554321 3455667777777777777777777777777777777777777
Q ss_pred Cc-chhcCCCCcEecccccc
Q 037314 345 PS-SIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 345 p~-~i~~l~~L~~L~L~~c~ 363 (566)
|. .+..+++|+.|++++|+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred CHHHHhCCCCCCEEEeeCCC
Confidence 64 36777777777777776
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=6e-16 Score=151.15 Aligned_cols=164 Identities=23% Similarity=0.289 Sum_probs=126.3
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
++..++++++.+++++ .+..+++|++|++++|.. ..++ .+..+++|++|++++|...+ ++. +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 4555667777777776 567778888888888743 4455 57778888888888876544 333 78888888888888
Q ss_pred ccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCeec
Q 037314 265 TAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 265 n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 344 (566)
|.++.+|.... ++|+.|++++|.... ++.+..+++|+.|++++|++++++ .++.+++|+.|++++|.++.+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRD------TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSB------SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CccCCcCcccc--CcccEEEccCCccCC------ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 88887776433 888888888886433 355778889999999999988886 678889999999999998887
Q ss_pred CcchhcCCCCcEecccccc
Q 037314 345 PSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 345 p~~i~~l~~L~~L~L~~c~ 363 (566)
..+..+++|+.|++++|+
T Consensus 166 -~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCc
Confidence 568888999999999887
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=4.8e-15 Score=139.29 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=117.4
Q ss_pred CEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcc
Q 037314 187 EHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETA 266 (566)
Q Consensus 187 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~ 266 (566)
+.++.+++.+.++|..+ .++|++|++++|...+..+..+..+++|++|++++|...+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666666666544 3467777777766554444556677777777777765554444556777777777777777
Q ss_pred ccccCcc-cccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCC-CCCCCCCCEEeccCCCCeec
Q 037314 267 ISQVPPS-IACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPES-LGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 267 l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 344 (566)
++.++.. +..+++|++|++++|..... ....+..+++|++|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 7766553 56677777777777764321 111256778888888888888887654 678888899999888654
Q ss_pred CcchhcCCCCcEecccccccCCcCCC
Q 037314 345 PSSIKQLSKLLFLTLRNCKRLQSLPE 370 (566)
Q Consensus 345 p~~i~~l~~L~~L~L~~c~~L~~lp~ 370 (566)
..+++|++|+++.|+....+|+
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ----cCCCCHHHHHHHHHhCCceeec
Confidence 3456788888888887777774
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.7e-15 Score=140.73 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=99.5
Q ss_pred CEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcc
Q 037314 187 EHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETA 266 (566)
Q Consensus 187 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~ 266 (566)
+.++++++.++++|..+. ++|+.|++++|......+..+..+++|++|++++|...+..|..+.++++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 466777777777777654 677888888776665555567777888888888877666667777777777777777777
Q ss_pred ccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeecC
Q 037314 267 ISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKIP 345 (566)
Q Consensus 267 l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp 345 (566)
++.+|..+ +.++++|++|+|++|.+..+ |..+..+++|+.|+|++|.++.++
T Consensus 92 l~~l~~~~---------------------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 92 ITELPKSL---------------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCCTTT---------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCHhH---------------------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 77665432 23445555666666666654 345666666666666666666665
Q ss_pred cc-hhcCCCCcEecccccc
Q 037314 346 SS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 346 ~~-i~~l~~L~~L~L~~c~ 363 (566)
.. +..+++|++|++++|+
T Consensus 145 ~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 145 KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHHhCCCCCCEEEeCCCC
Confidence 43 5666666666666665
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=6.3e-15 Score=160.37 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=89.0
Q ss_pred cCCCccceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEe
Q 037314 44 ESLFNELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDL 123 (566)
Q Consensus 44 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L 123 (566)
..++ +|+.|+++++.++++|....+++|+.|+|++|++..++. +..+++|+.|+|++|.+ ..+|.+..+++|++|+|
T Consensus 40 ~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEEC
T ss_pred hcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEe
Confidence 3443 788888888888888765578888888888888887765 77888888888888864 45667888888888888
Q ss_pred eCCCCccccchhhhhcccCcEEecCCCCCCCccCCcCCCCCccEEEecCCC
Q 037314 124 VGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGINLDSLKVLYLGGCS 174 (566)
Q Consensus 124 ~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~ 174 (566)
++|.... + +.+..+++|+.|+|++| .+..++....+++|+.|+|++|.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc
Confidence 8876554 2 45777788888888774 45555332256666666665553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=5.1e-15 Score=151.55 Aligned_cols=170 Identities=20% Similarity=0.193 Sum_probs=102.1
Q ss_pred EEecCCCCCcccCccccCCCCCcEEeccCCCCccccccccc-CCCCCcEEeccCCcCCcccccccCCCCccceeccCCcc
Q 037314 188 HLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLC-NLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETA 266 (566)
Q Consensus 188 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~ 266 (566)
.++++++.+..+|..+. +.++.|++++|...+..+..+. ++++|++|++++|...+..+..+.++++|+.|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 44455555555554332 2355555555544433333344 55555555555555444444455555666666666666
Q ss_pred ccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCCC----CCCCCCCEEeccCCCC
Q 037314 267 ISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPESL----GRSPSLNYLNLAENDF 341 (566)
Q Consensus 267 l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l 341 (566)
++.++. .+..+++|+.|++++|.... .....+..+++|+.|+|++|.+..+|..+ ..+++|+.|+|++|.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVV----VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccE----ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 555543 35556666666666665321 11112667788888888888888877553 5688999999999999
Q ss_pred eecCc-chhcCCC--CcEecccccc
Q 037314 342 EKIPS-SIKQLSK--LLFLTLRNCK 363 (566)
Q Consensus 342 ~~lp~-~i~~l~~--L~~L~L~~c~ 363 (566)
+.+|. .+..++. |+.|+|++|+
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CccCHHHhhhccHhhcceEEecCCC
Confidence 88874 4677776 4788888876
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=137.37 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred CEEecCCCCCcccCccccCCCCCcEEeccCCCCccccc-ccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 187 EHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVS-SSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 187 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
+.++++++.++++|..+. +.+++|++++|...+..+ ..+..+++|++|++++|...+..+..+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 466777777777776543 345677777765544433 34566667777777666555444455666666666666666
Q ss_pred cccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCeec
Q 037314 266 AISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFEKI 344 (566)
Q Consensus 266 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l 344 (566)
.++.++.. .+..+++|++|+|++|++..+ |..+..+++|+.|+|++|.++.+
T Consensus 92 ~l~~~~~~---------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 92 RLENVQHK---------------------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CCCCCCGG---------------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred ccCccCHh---------------------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 66555432 134455666666666666664 45566667777777777776665
Q ss_pred -CcchhcCCCCcEecccccc
Q 037314 345 -PSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 345 -p~~i~~l~~L~~L~L~~c~ 363 (566)
|..+..+++|+.|++++|+
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHhcCCCCCCEEEecCcC
Confidence 4556667777777777665
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.3e-15 Score=140.21 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=55.0
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCC-CCCCCCCCCccEEEeeCCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSR-IPDISLAFNIERLDLVGCA 127 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~ 127 (566)
+|++|+++++.++++|....+++|++|++++|.++.++ .+..+++|++|++++|.+... ++.++.+++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 45555555555555553225555555555555544432 445555555555555554432 2235555555555555555
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCccC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSLP 157 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp 157 (566)
.....+..++.+++|++|++++|..++.+|
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 444444555555555555555543344443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1e-17 Score=181.24 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=119.0
Q ss_pred CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccC-------------CcC-CCCCccEEE-ecCCCCC
Q 037314 112 ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLP-------------TGI-NLDSLKVLY-LGGCSNL 176 (566)
Q Consensus 112 l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-------------~~~-~l~~L~~L~-L~~~~~l 176 (566)
+...++|+.|+|++|. +..+|..++.+++|+.|++++|..+..+| ..+ .+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH--
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc--
Confidence 4567788888888875 45788889999999998886643222221 111 222222222 11100
Q ss_pred CcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCc
Q 037314 177 KRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLES 256 (566)
Q Consensus 177 ~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~ 256 (566)
+.+|+.+.+.+|.+..+|. ..|+.|++++|... .+|. ++.+++
T Consensus 422 ------~~~L~~l~l~~n~i~~l~~-----------------------------~~L~~L~Ls~n~l~-~lp~-~~~l~~ 464 (567)
T 1dce_A 422 ------LDDLRSKFLLENSVLKMEY-----------------------------ADVRVLHLAHKDLT-VLCH-LEQLLL 464 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH-----------------------------TTCSEEECTTSCCS-SCCC-GGGGTT
T ss_pred ------cchhhhhhhhcccccccCc-----------------------------cCceEEEecCCCCC-CCcC-cccccc
Confidence 0011111222222222221 13555666655333 3454 566666
Q ss_pred cceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc--CCCCCCCCCCCEE
Q 037314 257 LEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL--PESLGRSPSLNYL 334 (566)
Q Consensus 257 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L 334 (566)
|+.|++++|.++.+|..++.+++|+.|++++|.... +|.+..+++|+.|+|++|+++.+ |..++.+++|+.|
T Consensus 465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC------CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred CcEeecCcccccccchhhhcCCCCCEEECCCCCCCC------CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 666666666666666666666666666666665332 34566777888888888888876 7788888888888
Q ss_pred eccCCCCeecCcch----hcCCCCcEecc
Q 037314 335 NLAENDFEKIPSSI----KQLSKLLFLTL 359 (566)
Q Consensus 335 ~Ls~n~l~~lp~~i----~~l~~L~~L~L 359 (566)
+|++|.++.+|..+ ..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888887776543 34677777753
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-15 Score=148.76 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=101.7
Q ss_pred CCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEec
Q 037314 68 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNL 147 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L 147 (566)
.+.+++.++++++.++.++ .+..+++|++|++++|. +..++.+..+++|++|++++|..... +. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 3445556666666666665 45666677777777665 33455666667777777776654433 33 667777777777
Q ss_pred CCCCCCCccCCcCCCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccc
Q 037314 148 GHCISLKSLPTGINLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSL 227 (566)
Q Consensus 148 ~~c~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l 227 (566)
++ +.++.+|.... ++ |++|++++|.++.++ .+..+++|+.|++++|...+ ++ .+
T Consensus 93 ~~-N~l~~l~~~~~-~~---------------------L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l 146 (263)
T 1xeu_A 93 NR-NRLKNLNGIPS-AC---------------------LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-ML 146 (263)
T ss_dssp CS-SCCSCCTTCCC-SS---------------------CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GG
T ss_pred CC-CccCCcCcccc-Cc---------------------ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HH
Confidence 76 34555544222 33 444444444555543 36666777777777665433 33 46
Q ss_pred cCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccC
Q 037314 228 CNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVP 271 (566)
Q Consensus 228 ~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~ 271 (566)
..+++|++|++++|...+. ..+..+++|+.|++++|.+...|
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 6667777777777655443 45566666666666666665444
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=4.7e-17 Score=176.05 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=143.4
Q ss_pred CCCCEEecCCCCCcccCccccCCCCCcEEeccCCC-------------CcccccccccCCCCCcEEe-ccCCcCCccccc
Q 037314 184 CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCS-------------RLKSVSSSLCNLKSLVNLY-LSGCLKLEKLPE 249 (566)
Q Consensus 184 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-------------~l~~lp~~l~~l~~L~~L~-ls~~~~l~~~p~ 249 (566)
.+|+.|+|++|.++.+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.+. ...++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhh
Confidence 47788899999999999999999999999997764 4556677788888888888 44432 111111
Q ss_pred ------ccCC--CCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcc
Q 037314 250 ------EIGN--LESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITE 320 (566)
Q Consensus 250 ------~l~~--l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~ 320 (566)
.+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.... +|. ++.+++|+.|+|++|.++.
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~------lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA------LPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC------CCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc------cchhhhcCCCCCEEECCCCCCCC
Confidence 1111 1258899999999999987 9999999999999998552 454 8899999999999999999
Q ss_pred cCCCCCCCCCCCEEeccCCCCeec--CcchhcCCCCcEecccccccCCcCC
Q 037314 321 LPESLGRSPSLNYLNLAENDFEKI--PSSIKQLSKLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 321 lp~~l~~l~~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~lp 369 (566)
+| .++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ ++.+|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 98 899999999999999999988 8899999999999999998 44444
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=6.9e-14 Score=132.64 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=107.4
Q ss_pred CCCEEecCCCCCcccCc--cccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceecc
Q 037314 185 NIEHLDLKETAIEELPS--SIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLA 262 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l 262 (566)
.+++|++++|.+..++. .+..+++|++|++++|...+..+..+.++++|++|++++|...+..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 56777888888887743 3788999999999998877776778999999999999999887777778999999999999
Q ss_pred CCccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCC
Q 037314 263 NETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAEND 340 (566)
Q Consensus 263 ~~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~ 340 (566)
++|.++.+++ . +..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|.
T Consensus 113 s~N~l~~~~~~~----------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDS----------------------------FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTS----------------------------STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhH----------------------------cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999887632 2 34566788888888888886 6788899999999999998
Q ss_pred Ce
Q 037314 341 FE 342 (566)
Q Consensus 341 l~ 342 (566)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 76
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=6.6e-14 Score=132.74 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCcEEecCCCCCCCCCC-CCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEe
Q 037314 94 ALKRLNLSYSKQLSRIP-DISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYL 170 (566)
Q Consensus 94 ~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L 170 (566)
+|+.|++++|.+....+ .|..+++|++|+|++|......|..|..+++|++|+|++ +.++.+|... .+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEEC
Confidence 34444444443332222 244444455555554444444445555555555555555 3344444322 2333333333
Q ss_pred cCCCCCCcCCcccCCCCEEecCCCCCccc-CccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcC
Q 037314 171 GGCSNLKRFPEISCNIEHLDLKETAIEEL-PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLK 243 (566)
Q Consensus 171 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~ 243 (566)
++ |.+..+ |..+..+++|++|++++|...+..+..+..+++|++|++++|..
T Consensus 112 ~~---------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NA---------------------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CS---------------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC---------------------CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 33 233333 23355566666666666655554445556666666666666543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.4e-13 Score=131.39 Aligned_cols=99 Identities=16% Similarity=0.025 Sum_probs=55.2
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCA 127 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 127 (566)
.+.++.+++.++.+|..+. ++|++|++++|+++.+ +..+..+++|++|+|++|.+....+. |..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4456666666666665442 5666666666666655 34456666666666666654322222 4556666666666554
Q ss_pred CccccchhhhhcccCcEEecCC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGH 149 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~ 149 (566)
.....+..+..+++|++|++++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccChhHhCcchhhCeEeccC
Confidence 4433333344555555555544
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=4.8e-14 Score=144.28 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=71.2
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccccc-CC-CCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQ-NLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCA 127 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~-~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 127 (566)
+.++++++.++.+|..+ +..++.|+|++|+|+.++.. +. .+++|++|+|++|.+....++ |..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 56777778888887654 34677888888888877654 34 777888888887775554443 7777777777777776
Q ss_pred CccccchhhhhcccCcEEecCCCCCCCcc
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHCISLKSL 156 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 156 (566)
.....+..|..+++|++|+|++| .+..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~ 127 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVV 127 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEE
Confidence 55554555677777777777663 34433
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3e-14 Score=128.92 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCCcEEeccCCCCc-ccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccc-cCcccccCCCCCEEE
Q 037314 207 SRLVHLDLTNCSRL-KSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQ-VPPSIACLNRVESLS 284 (566)
Q Consensus 207 ~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~ 284 (566)
++|++|++++|... +.+|..+..+++|++|++++|...+. ..+..+++|+.|++++|.+.. +|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------- 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------- 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC-------
Confidence 44555555554433 34444455555555555555543322 455556666666666665554 33333223
Q ss_pred ccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC--CCCCCCCCCCEEeccCCCCeecCc----chhcCCCCcEec
Q 037314 285 FDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP--ESLGRSPSLNYLNLAENDFEKIPS----SIKQLSKLLFLT 358 (566)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~ 358 (566)
++|++|++++|.+++++ ..+..+++|+.|++++|.++.+|. .+..+++|++|+
T Consensus 95 ---------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 95 ---------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp ---------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred ---------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 33444444444444433 344455555555555555555544 455555555555
Q ss_pred ccccc
Q 037314 359 LRNCK 363 (566)
Q Consensus 359 L~~c~ 363 (566)
+++|+
T Consensus 154 l~~n~ 158 (168)
T 2ell_A 154 GYDRE 158 (168)
T ss_dssp TEETT
T ss_pred CCCCC
Confidence 55554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=6.2e-14 Score=126.87 Aligned_cols=122 Identities=23% Similarity=0.256 Sum_probs=88.8
Q ss_pred CccceeccCCcccc--ccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-cCCCCCCCCCC
Q 037314 255 ESLEVMLANETAIS--QVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE-LPESLGRSPSL 331 (566)
Q Consensus 255 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L 331 (566)
++|+.|++++|.++ .+|..+..+++|+.|++++|.... ++.+..+++|++|++++|.+.. +|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 44455555555554 455555556666666666665322 1346678899999999999998 67667779999
Q ss_pred CEEeccCCCCeecC--cchhcCCCCcEecccccccCCcCCC--------CCCCCeEeecCCc
Q 037314 332 NYLNLAENDFEKIP--SSIKQLSKLLFLTLRNCKRLQSLPE--------LPCGSTIFARHCT 383 (566)
Q Consensus 332 ~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~--------lp~~~~L~~~~c~ 383 (566)
+.|++++|.++.+| ..+..+++|++|++++|+ +..+|. +|.++.|++.+|.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999999887 678999999999999997 445543 6666777777664
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.7e-13 Score=121.37 Aligned_cols=125 Identities=21% Similarity=0.284 Sum_probs=84.9
Q ss_pred CCCcEEeccCCcCC-cccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCC
Q 037314 231 KSLVNLYLSGCLKL-EKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNL 308 (566)
Q Consensus 231 ~~L~~L~ls~~~~l-~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L 308 (566)
++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|..... +|. +..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-----LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-----THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-----HHHHhhhCCCC
Confidence 44555555555444 34555555555566666666655555 4555666666666666654321 333 4457888
Q ss_pred cEEecccCCCcccC--CCCCCCCCCCEEeccCCCCeecCc----chhcCCCCcEecccc
Q 037314 309 EYLSLVDCGITELP--ESLGRSPSLNYLNLAENDFEKIPS----SIKQLSKLLFLTLRN 361 (566)
Q Consensus 309 ~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~ 361 (566)
++|++++|.+++++ ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888888854 778888999999999999888876 578899999998863
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.2e-12 Score=119.49 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=106.5
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCAS 128 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 128 (566)
-+.++++++.++.+|..+ +++|++|++++|+|+.+|..+..+++|++|+|++|.+....++ |.++++|++|+|++|..
T Consensus 12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 367899999999999765 4799999999999999999999999999999999997766554 89999999999999988
Q ss_pred ccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCS 174 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~ 174 (566)
....+..|..+++|++|+|++ +.++.+|... .+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 777777899999999999999 5677887753 68888888888864
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=8e-14 Score=155.35 Aligned_cols=141 Identities=23% Similarity=0.223 Sum_probs=71.9
Q ss_pred cccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCC
Q 037314 86 WNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDS 164 (566)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 164 (566)
+..+..+++|+.|+|++|.+....+.+..+++|++|+|++|... .+|..|+.+++|++|+|++| .++.+|..+ .++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~- 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF- 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT-
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC-
Confidence 33444445555555555443321122334444555555544333 44444444555555555442 233444333 233
Q ss_pred ccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCC-CcEEeccCCcC
Q 037314 165 LKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKS-LVNLYLSGCLK 243 (566)
Q Consensus 165 L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~-L~~L~ls~~~~ 243 (566)
+|++|+|++|.++.+|..++.+++|+.|+|++|...+.+|..+..+.. +..|++++|..
T Consensus 294 --------------------~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 294 --------------------QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp --------------------TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 455555555666677777777888888888887777777665544321 12356666666
Q ss_pred Cccccc
Q 037314 244 LEKLPE 249 (566)
Q Consensus 244 l~~~p~ 249 (566)
.+.+|.
T Consensus 354 ~~~~p~ 359 (727)
T 4b8c_D 354 EIPLPH 359 (727)
T ss_dssp CCCCCC
T ss_pred cCcCcc
Confidence 655554
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.7e-13 Score=152.79 Aligned_cols=141 Identities=23% Similarity=0.293 Sum_probs=95.4
Q ss_pred cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc
Q 037314 222 SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI 301 (566)
Q Consensus 222 ~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 301 (566)
..+..+..+++|+.|+|++|... .+|..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|.... +|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~------lp~ 287 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------LPA 287 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS------CCS
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc------cCh
Confidence 44566777777777777776644 66666667778888888888887777777788888888888877441 344
Q ss_pred -ccCCCCCcEEecccCCCcccCCCCCCCCCCCEEeccCCCCee-cCcchhcCC-CCcEecccccccCCcCC
Q 037314 302 -LFQLQNLEYLSLVDCGITELPESLGRSPSLNYLNLAENDFEK-IPSSIKQLS-KLLFLTLRNCKRLQSLP 369 (566)
Q Consensus 302 -~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L~L~~c~~L~~lp 369 (566)
+..+++|++|+|++|.+..+|..++.+++|+.|+|++|.++. +|..+..+. .+..|++++|.....+|
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 677888888888888888888888889999999999998874 454443321 11235566655443333
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3.1e-13 Score=119.62 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCCEEecCCCCCc--ccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceec
Q 037314 184 CNIEHLDLKETAIE--ELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVML 261 (566)
Q Consensus 184 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~ 261 (566)
.++++|++++|.+. .+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 35566666666665 5666666666666666666644333 4455666666666666655544555555555555555
Q ss_pred cCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCC----CCCCCCCCCEEecc
Q 037314 262 ANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPE----SLGRSPSLNYLNLA 337 (566)
Q Consensus 262 l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~Ls 337 (566)
+++|.++.++. ...+..+++|++|++++|.+++++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~--------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLST--------------------------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHH--------------------------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHH--------------------------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555554320 1224556666777777777666654 46667777777765
Q ss_pred C
Q 037314 338 E 338 (566)
Q Consensus 338 ~ 338 (566)
+
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=3e-12 Score=118.46 Aligned_cols=128 Identities=24% Similarity=0.287 Sum_probs=78.0
Q ss_pred CCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccc-cccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 186 IEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSS-SLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 186 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
-++++++++.++++|..+.. +|++|++++|...+..+. .+..+++|++|++++|...+..|..+.++++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 36777888888888876543 777777777655444332 366777777777777666555566666666666666666
Q ss_pred ccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCccc-CCCCCCCCCCCEEeccCCCCe
Q 037314 265 TAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITEL-PESLGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 265 n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 342 (566)
|.++.++.. .+.++++|++|++++|+++.+ |..+..+++|++|+|++|.+.
T Consensus 88 N~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNK---------------------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSS---------------------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHH---------------------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 655544321 133445555555555555553 455566666666666666654
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=1.5e-12 Score=131.34 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCccceeccCCccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCc-EEecccCCCcccC-CCCCCCCC
Q 037314 254 LESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLE-YLSLVDCGITELP-ESLGRSPS 330 (566)
Q Consensus 254 l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~-~L~L~~~~l~~lp-~~l~~l~~ 330 (566)
+++|+.+++.+|.++.++. .+.++++|+.+++.++ ... ..-..|.++++|+ .+++.+ +++.++ ..+..|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~---I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKT---IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCE---ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cce---ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 5666677777666666655 4666666777766664 111 1112266777777 777777 677765 66788888
Q ss_pred CCEEeccCCCCeecCc-chhcCCCCcEec
Q 037314 331 LNYLNLAENDFEKIPS-SIKQLSKLLFLT 358 (566)
Q Consensus 331 L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~ 358 (566)
|+.+++++|.++.++. .|.++++|+.++
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8888888888887765 477777777765
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2.8e-12 Score=118.73 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=101.0
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccccc--CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
-+.++++++.++.+|..+. .+|++|++++|+++.++.. +..+++|++|+|++|.+....|+ |..+++|++|+|++|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3688899999999997653 3899999999999988753 78999999999999987776665 889999999999999
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSN 175 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~ 175 (566)
...+..+..+..+++|++|++++|......|..+ .+++|++|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8877777778899999999999854333445555 678888888887653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=1.8e-12 Score=130.71 Aligned_cols=213 Identities=13% Similarity=0.112 Sum_probs=117.4
Q ss_pred CCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCC----ccccchhhhhcccC
Q 037314 69 PEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCAS----LIETHSSIQHLNKL 142 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~----~~~~~~~~~~l~~L 142 (566)
+.+|++|++++ +++.+++ +|.++++|+.|++++|.+....+. |..+.++..+.+..... .......+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666666 5665543 356666666666666554322222 55544444444332100 00011123333333
Q ss_pred c-EEecCCCCCCCcc--CCcCCCCCccEEEecCCCCCCc---CCcccCCCCEEecCCCCCcccCcc-ccCCCCCcEEecc
Q 037314 143 V-FLNLGHCISLKSL--PTGINLDSLKVLYLGGCSNLKR---FPEISCNIEHLDLKETAIEELPSS-IGNLSRLVHLDLT 215 (566)
Q Consensus 143 ~-~L~L~~c~~l~~l--p~~~~l~~L~~L~L~~~~~l~~---~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~ 215 (566)
+ .+.+.....+... ...+...+++.+.+.+.-.... +.....+|+.+++++|.+..+|.. |.++++|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3 3333221111100 0011355556666655321111 112246788888888888888764 7788888888888
Q ss_pred CCCCcccccccccCCCCCc-EEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEEE
Q 037314 216 NCSRLKSVSSSLCNLKSLV-NLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLS 284 (566)
Q Consensus 216 ~~~~l~~lp~~l~~l~~L~-~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~ 284 (566)
++ ....-+.+|.++++|+ .+++.+ .....-+..|.++++|+.++++.+.++.++. .+.++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 75 3333345678888888 888877 3333334678888888888888888887765 566666666664
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.4e-12 Score=118.97 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=67.0
Q ss_pred ccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc--ccCCCCCcEEecccCCCcccCC--CCCCCCCC
Q 037314 256 SLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI--LFQLQNLEYLSLVDCGITELPE--SLGRSPSL 331 (566)
Q Consensus 256 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~--~~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L 331 (566)
+|+.|++++|.++.+ ..+..+++|+.|++++|.... +|. +..+++|++|++++|.+.++|. .+..+++|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc------cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 444444444444444 334444555555555544221 121 3566778888888888877776 77888889
Q ss_pred CEEeccCCCCeecCcc----hhcCCCCcEecccccc
Q 037314 332 NYLNLAENDFEKIPSS----IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 332 ~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~ 363 (566)
+.|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 116 ~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 116 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999988888875 7888899999888876
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=114.91 Aligned_cols=106 Identities=23% Similarity=0.279 Sum_probs=74.8
Q ss_pred CCCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccC
Q 037314 184 CNIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLAN 263 (566)
Q Consensus 184 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~ 263 (566)
.++++|++++|.++.+|..+..+++|++|++++|......+..|.++++|++|++++|......+..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35666777777777777777777788888887777666666677777777788777777666666677777777777777
Q ss_pred CccccccCc-ccccCCCCCEEEccCCC
Q 037314 264 ETAISQVPP-SIACLNRVESLSFDRCK 289 (566)
Q Consensus 264 ~n~l~~l~~-~l~~l~~L~~L~l~~~~ 289 (566)
+|.++.+|. .+..+++|+.|++++|.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 777776665 35555555555555554
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-11 Score=112.51 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=65.9
Q ss_pred CCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 186 IEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 186 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
.+.++++++.+..+|..+. ++|++|++++|...+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567777777777775442 56677777766544433344555666666666655443332233344444444444444
Q ss_pred cccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccCCC-CCCCCCCCEEeccCCCCe
Q 037314 266 AISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELPES-LGRSPSLNYLNLAENDFE 342 (566)
Q Consensus 266 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 342 (566)
.++.++.. .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~---------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNG---------------------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTT---------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHH---------------------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44333221 123344555555555555554433 345555555555555544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=3.5e-12 Score=116.28 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=76.6
Q ss_pred ccceEEEeCCccCCCCCCCCCCC-CeEEEEcCCCCCccccccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeC
Q 037314 48 NELRYFYWDGYPLKSLPSKNIPE-HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVG 125 (566)
Q Consensus 48 ~~Lr~L~l~~~~l~~lp~~~~~~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 125 (566)
.+|+.|++++|.++.+|...... +|+.|++++|+++.+ ..+..+++|++|++++|.+....+. +..+++|++|++++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 36777777777777665544333 777777777777766 5666777777777777765543334 36667777777777
Q ss_pred CCCccccch--hhhhcccCcEEecCCCCCCCccCCc----C-CCCCccEEEecCC
Q 037314 126 CASLIETHS--SIQHLNKLVFLNLGHCISLKSLPTG----I-NLDSLKVLYLGGC 173 (566)
Q Consensus 126 c~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L~~~ 173 (566)
|.. +.+|. .+..+++|+.|++++| .+..+|.. + .+++|++|++++|
T Consensus 98 N~i-~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 98 NSL-VELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCC-CCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcC-CcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 654 33443 5666777777777663 44555553 2 5666666666554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=4.1e-11 Score=109.16 Aligned_cols=126 Identities=24% Similarity=0.245 Sum_probs=98.3
Q ss_pred cceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCcccccc-CCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCC
Q 037314 49 ELRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGC 126 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 126 (566)
+.+.++++++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|++|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567888888888888654 46899999999999887654 58889999999999886654444 688899999999998
Q ss_pred CCccccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCC
Q 037314 127 ASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNL 176 (566)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l 176 (566)
......+..+..+++|++|++++| .++.+|... .+++|++|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 776665566788899999999884 667777654 5788888888887543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=3.3e-14 Score=132.44 Aligned_cols=126 Identities=24% Similarity=0.218 Sum_probs=81.9
Q ss_pred ccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCcccccC
Q 037314 225 SSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQ 304 (566)
Q Consensus 225 ~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (566)
..+..+++|++|++++|...+ +| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.... +|.+..
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------l~~~~~ 113 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------LSGIEK 113 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC------HHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc------CCcccc
Confidence 356666666666666654433 55 5666666777777777776666666666666777766665332 344666
Q ss_pred CCCCcEEecccCCCcccCC--CCCCCCCCCEEeccCCCCeecCc-----------chhcCCCCcEec
Q 037314 305 LQNLEYLSLVDCGITELPE--SLGRSPSLNYLNLAENDFEKIPS-----------SIKQLSKLLFLT 358 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~-----------~i~~l~~L~~L~ 358 (566)
+++|+.|++++|.+..++. .+..+++|++|++++|.+...+. .+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6777777777777777553 56777788888888887754322 156677777776
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=4.9e-10 Score=115.77 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=97.1
Q ss_pred CCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEE
Q 037314 205 NLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLS 284 (566)
Q Consensus 205 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 284 (566)
...+|+.+.+... ....-...+.++..|+.+.+..+ ....-...+..+..++.+....+.+. ...+..+.+|+.+.
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVK 303 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEE
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--cccccccccccccc
Confidence 3445555555432 11122234556666666666543 22223345555666666555443322 12455677777777
Q ss_pred ccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chhcCCCCcEeccccc
Q 037314 285 FDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIKQLSKLLFLTLRNC 362 (566)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 362 (566)
+..+- . ...-..+.++.+|+.++|.. .++.+. ..+.+|++|+.+++..+ ++.+.. .+.++++|+.+++..+
T Consensus 304 l~~~i--~---~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 304 LLDSV--K---FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTC--C---EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccc--c---eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 75431 1 11122367788888888864 366665 56788899999999766 777754 5888899999988653
Q ss_pred ccCCcCCCCCCCCeEeecCCcCcccc
Q 037314 363 KRLQSLPELPCGSTIFARHCTSLETL 388 (566)
Q Consensus 363 ~~L~~lp~lp~~~~L~~~~c~~L~~l 388 (566)
++.+.. .+.+|++|+.+
T Consensus 377 --~~~~~~-------~F~~c~~L~~I 393 (394)
T 4fs7_A 377 --LEQYRY-------DFEDTTKFKWI 393 (394)
T ss_dssp --GGGGGG-------GBCTTCEEEEE
T ss_pred --CEEhhh-------eecCCCCCcEE
Confidence 333321 46788888765
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=1.2e-09 Score=112.87 Aligned_cols=229 Identities=11% Similarity=0.071 Sum_probs=121.3
Q ss_pred cceEEEeCCccCCCCCCC-CCCCCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeC
Q 037314 49 ELRYFYWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVG 125 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 125 (566)
+|+.+.+..+ ++.++.. |.-.+|+.+.++. .++.+. .++.++.+|+.+++.+|.+...... |. ..+|+.+.|..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 3555555433 4444432 2223455555553 444443 2345555555555555442222122 33 35555555543
Q ss_pred CCCccccchhhhhcccCcEEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCc----ccCCCCEEecCCCCCc---
Q 037314 126 CASLIETHSSIQHLNKLVFLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPE----ISCNIEHLDLKETAIE--- 197 (566)
Q Consensus 126 c~~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~~~i~--- 197 (566)
+ ....-...|.++++|+.+.+.. .++.++... .-.+|+.+.+.. .++.++. ...+|+.+.+.++.+.
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred c-hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 2 2222223455555555555543 234444333 224555555532 1222221 1235555555554443
Q ss_pred --ccC-ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-c
Q 037314 198 --ELP-SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-S 273 (566)
Q Consensus 198 --~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~ 273 (566)
.++ ..+.++++|+.+.+.+ .....-..+|.++++|+.+.+..+ ....-...|.++ +|+.+++.+|.+..++. .
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 344 3477888888888874 233333457788888888888653 222334577888 88888888887776654 4
Q ss_pred cccC-CCCCEEEccCC
Q 037314 274 IACL-NRVESLSFDRC 288 (566)
Q Consensus 274 l~~l-~~L~~L~l~~~ 288 (566)
+..+ .+++.|.+..+
T Consensus 365 F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCCSCTTCCEEEECGG
T ss_pred ccCCCCCccEEEeCHH
Confidence 5555 36778877654
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=3.3e-09 Score=109.52 Aligned_cols=59 Identities=5% Similarity=0.118 Sum_probs=34.2
Q ss_pred ccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCcc-hhcC-CCCcEeccccc
Q 037314 302 LFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPSS-IKQL-SKLLFLTLRNC 362 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l-~~L~~L~L~~c 362 (566)
|.++++|+.+.|.. +++.+. ..+..+ +|+.+++.+|....++.. +.++ ..++.|++..+
T Consensus 319 F~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 45556666666633 355543 456666 777777777766655433 4445 35666666543
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.9e-09 Score=111.32 Aligned_cols=321 Identities=12% Similarity=0.125 Sum_probs=195.7
Q ss_pred ccCCCCCCC-C-CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEEeeCCCCcccc
Q 037314 58 YPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLDLVGCASLIET 132 (566)
Q Consensus 58 ~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~~~~~ 132 (566)
|.+++++.. | .+.+|+.+.++. .++.+.+ +|.++.+|+.+++..+ +..+++ |.++.+|+.+.+..+ ....-
T Consensus 57 y~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 57 YDVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eeEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence 456677744 4 788999999984 5887754 6889999999999765 444443 888888888776543 22222
Q ss_pred chhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCc----ccCCCCEEecCCCCCcccCc-cccC
Q 037314 133 HSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPE----ISCNIEHLDLKETAIEELPS-SIGN 205 (566)
Q Consensus 133 ~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~~~i~~lp~-~~~~ 205 (566)
...|.++..++...... ...+.... ++++|+.+.+... ...++. ...+|+.+.+..+ ++.++. .+.+
T Consensus 133 ~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp TTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred ceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 33455554433333222 22333222 6777888877642 222222 2235666666544 444433 3666
Q ss_pred CCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCcccccCCCCCEEEc
Q 037314 206 LSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSF 285 (566)
Q Consensus 206 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 285 (566)
+..|+.+.+..+. ..+........+|+.+.+... ....-...+.++..|+.+.+..+...--...+..+..++.+..
T Consensus 207 ~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 207 CILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp CTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred ccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 7777777665432 223333444567777777542 1222234566777888887766544433446667777777766
Q ss_pred cCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chhcCCCCcEecccccc
Q 037314 286 DRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 363 (566)
..... .-..+..+.+|+.+.+..+ +..++ ..+..+++|+.++|..+ ++.+.. .+.++++|+.+.+..+
T Consensus 284 ~~~~i-------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 284 GSVIV-------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp CSSEE-------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred Cceee-------ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 54321 0112667888999888654 66665 56788999999999644 777754 5888899999988654
Q ss_pred cCCcCCCCCCCCeEeecCCcCcccccCcchhcccccccceeeEeeCCCCCC
Q 037314 364 RLQSLPELPCGSTIFARHCTSLETLSSLSTLFTRSSELWQAFDFCNCFKLN 414 (566)
Q Consensus 364 ~L~~lp~lp~~~~L~~~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~C~~L~ 414 (566)
++.|++- .+.+|.+|+.+..+..+. .. ...|.+|.+|.
T Consensus 354 -l~~I~~~------aF~~C~~L~~i~lp~~~~-----~~-~~~F~~c~~L~ 391 (394)
T 4fs7_A 354 -LRKIGAN------AFQGCINLKKVELPKRLE-----QY-RYDFEDTTKFK 391 (394)
T ss_dssp -CCEECTT------TBTTCTTCCEEEEEGGGG-----GG-GGGBCTTCEEE
T ss_pred -ccEehHH------HhhCCCCCCEEEECCCCE-----Eh-hheecCCCCCc
Confidence 6666541 367888888876443221 12 23577887775
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=3.6e-13 Score=125.43 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=96.3
Q ss_pred cccccccCCCCccceeccCCccccccCcccccCCCCCEEEccCCCCCCCCCCCCccc-ccCCCCCcEEecccCCCcccCC
Q 037314 245 EKLPEEIGNLESLEVMLANETAISQVPPSIACLNRVESLSFDRCKGRPPLMSLKLPI-LFQLQNLEYLSLVDCGITELPE 323 (566)
Q Consensus 245 ~~~p~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~l~~lp~ 323 (566)
+.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.... +|. +..+++|++|++++|+++.+|
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~------l~~~~~~~~~L~~L~L~~N~l~~l~- 109 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK------IENLDAVADTLEELWISYNQIASLS- 109 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS------CSSHHHHHHHCSEEEEEEEECCCHH-
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc------ccchhhcCCcCCEEECcCCcCCcCC-
Confidence 444558899999999999999999988 88999999999999997442 444 556689999999999999887
Q ss_pred CCCCCCCCCEEeccCCCCeecCc--chhcCCCCcEecccccccCC
Q 037314 324 SLGRSPSLNYLNLAENDFEKIPS--SIKQLSKLLFLTLRNCKRLQ 366 (566)
Q Consensus 324 ~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~L~ 366 (566)
.+..+++|+.|++++|.++.++. .+..+++|++|++++|+...
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 57788999999999999998765 68899999999999997433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=3.9e-10 Score=101.97 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=66.0
Q ss_pred ceEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 037314 50 LRYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCA 127 (566)
Q Consensus 50 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 127 (566)
.+.++++++.++.+|..+ +++|++|+|++|+|+.+ +..+..+++|++|+|++|.+....++ |..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456777777777777655 36777777777777766 44567777777777777765544443 5667777777777766
Q ss_pred CccccchhhhhcccCcEEecCCC
Q 037314 128 SLIETHSSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~c 150 (566)
.....+..+..+++|++|+|++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 55444445666666666666664
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=7.7e-10 Score=100.44 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=62.2
Q ss_pred eEEEeCCccCCCCCCCCCCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCCCC-CCCCCCccEEEeeCCCC
Q 037314 51 RYFYWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRIPD-ISLAFNIERLDLVGCAS 128 (566)
Q Consensus 51 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 128 (566)
+.++++++.++++|..+. ++|++|+|++|+|+.+ +..+..+++|++|+|++|.+....+. |..+++|++|+|++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 566777777777776543 6777777777777766 34566777777777777764443333 46666677777766655
Q ss_pred ccccchhhhhcccCcEEecCCC
Q 037314 129 LIETHSSIQHLNKLVFLNLGHC 150 (566)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~L~~c 150 (566)
....+..+..+++|++|++++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 4433334666666666666663
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=7.2e-10 Score=100.20 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=74.3
Q ss_pred CCCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 185 NIEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 185 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
..+.++++++.++++|..+. ++|++|++++|...+..|..+.++++|++|++++|...+..+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35677888888888887663 7788888888777766677778888888888888766655555667788888888888
Q ss_pred ccccccCc-ccccCCCCCEEEccCCC
Q 037314 265 TAISQVPP-SIACLNRVESLSFDRCK 289 (566)
Q Consensus 265 n~l~~l~~-~l~~l~~L~~L~l~~~~ 289 (566)
|.++.++. .+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88777765 35555666665555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=7.9e-10 Score=100.35 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCEEecCCCCCcccCccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCc
Q 037314 186 IEHLDLKETAIEELPSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANET 265 (566)
Q Consensus 186 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n 265 (566)
-+.++++++.+.++|..+. ++|++|++++|...+..|..+.++++|++|++++|...+..+..+..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3567778888888887664 77888888887776666777777888888888887555444445677777777777777
Q ss_pred cccccCcc-cccCCCCCEEEccCCC
Q 037314 266 AISQVPPS-IACLNRVESLSFDRCK 289 (566)
Q Consensus 266 ~l~~l~~~-l~~l~~L~~L~l~~~~ 289 (566)
.++.+|.. +..+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 77776653 5555555555555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=1.7e-10 Score=118.06 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred cCCCCEEecCCCCCcccC-----cccc-CCCCCcEEeccCCCCcccccccc-cCCCCCcEEeccCCcCCccccccc----
Q 037314 183 SCNIEHLDLKETAIEELP-----SSIG-NLSRLVHLDLTNCSRLKSVSSSL-CNLKSLVNLYLSGCLKLEKLPEEI---- 251 (566)
Q Consensus 183 ~~~L~~L~L~~~~i~~lp-----~~~~-~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~ls~~~~l~~~p~~l---- 251 (566)
...+++|++++|.+.... ..+. ..++|++|++++|.....-...+ ..+++|++|++++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 346777777777665421 2222 22566666666665433222111 234456666666654432211111
Q ss_pred -CCCCccceeccCCccccc-----cCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcc-----
Q 037314 252 -GNLESLEVMLANETAISQ-----VPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITE----- 320 (566)
Q Consensus 252 -~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~----- 320 (566)
...++|+.|++++|.++. ++..+ ..+++|++|+|++|.+.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----------------------------~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGL----------------------------AGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHH----------------------------HTCSSCCEEECTTSSCHHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHH----------------------------hcCCCcCEEeCCCCCCCcHHHHH
Confidence 123445555555555432 22222 344555555555555543
Q ss_pred cCCCCCCCCCCCEEeccCCCCee-----cCcchhcCCCCcEecccccc
Q 037314 321 LPESLGRSPSLNYLNLAENDFEK-----IPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 321 lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 363 (566)
++..+...++|++|+|++|.++. ++..+...++|++|+|++|+
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 23344445566666666666542 33334455666666666654
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.79 E-value=6.9e-07 Score=91.99 Aligned_cols=320 Identities=10% Similarity=0.115 Sum_probs=149.0
Q ss_pred ecCHHHHhcCc-CCcEEEEeecCCCCccceEEcCCCccCCCccceEEEeCCcc---CCCCCCC-C-CCCCeEEEEcCCCC
Q 037314 8 CLNPNTFTKMH-RLRFFKFYNIFAGVNKYKVRHSRYLESLFNELRYFYWDGYP---LKSLPSK-N-IPEHLVSLEMPHSN 81 (566)
Q Consensus 8 ~~~~~~f~~m~-~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~~L~L~~~~ 81 (566)
.|...||.+++ .|+...|... ....=...|.... +|+.+.+..+. ++.++.. | .+.+|+.+.++.+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~-~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT------VTEIGSNAFYNCT-SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT------CCEECTTTTTTCT-TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred EcCHhhccCCCCcCEEEEECCC------eeEEhHHHhhCCc-cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 45667777774 4777777651 1122233455543 67777766542 4555432 3 5566666665543
Q ss_pred Ccccc-ccCCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEeeCCCCccccch-hhhhcccCcEEecCCCCCCCccC
Q 037314 82 IEQLW-NGVQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLVGCASLIETHS-SIQHLNKLVFLNLGHCISLKSLP 157 (566)
Q Consensus 82 i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~lp 157 (566)
++.+. ..+..+.+|+.+.+..+ ...++ .|..+.+|+.+.+..+ +..+.. .|. ..+|+.+.+.. .++.+.
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~--~~~~i~ 197 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA--KVTRIG 197 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT--TCCEEC
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC--cccccc
Confidence 44443 34566677777777543 22333 2666666777666543 222222 232 34566665543 122222
Q ss_pred CcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCccc-CccccCCCCCcEEeccCCCCcccccccccCCCCCc
Q 037314 158 TGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEEL-PSSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLV 234 (566)
Q Consensus 158 ~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 234 (566)
... .+.+++.......... ...... ...+..... .........+..+.+.. .....-..+|.++.+|+
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYP-AIDNVL-------YEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLA 268 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSC-BSSSCE-------EEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred cchhhhccccceecccccccc-ccccee-------ecccccccccccccccccccceEEcCC-cceEcccceeeeccccc
Confidence 211 4555555544332110 000000 000000000 00001111222222221 01111123455556666
Q ss_pred EEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEec
Q 037314 235 NLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSL 313 (566)
Q Consensus 235 ~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L 313 (566)
.+.+... ....-...+.+++.|+.+.+. +.++.++. .+.++.+|+.+.+..+- . ...--.|.+|.+|+.+.|
T Consensus 269 ~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v--~---~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 269 SVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGI--T---QILDDAFAGCEQLERIAI 341 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTC--C---EECTTTTTTCTTCCEEEE
T ss_pred EEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcc--c---EehHhHhhCCCCCCEEEE
Confidence 6655432 112222345556666666654 33444543 55667777777775431 1 111223677788888888
Q ss_pred ccCCCcccC-CCCCCCCCCCEEeccCCCCeecCcchhcCCCCcEecccc
Q 037314 314 VDCGITELP-ESLGRSPSLNYLNLAENDFEKIPSSIKQLSKLLFLTLRN 361 (566)
Q Consensus 314 ~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 361 (566)
.. +++.+. ..+.+|++|+.+++.++.... ..+..+..|+.+.+..
T Consensus 342 p~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 342 PS-SVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CT-TCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC-------
T ss_pred Cc-ccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCC
Confidence 54 366665 567888888888888765321 2345556666666543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2.5e-08 Score=100.97 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=83.0
Q ss_pred CEEecCCC-CCcccCccccCCCCCcEEeccC-CCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCC
Q 037314 187 EHLDLKET-AIEELPSSIGNLSRLVHLDLTN-CSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANE 264 (566)
Q Consensus 187 ~~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~ 264 (566)
..++++++ .+..+|. +..+++|+.|+|++ |...+..+..|.++++|+.|+|++|...+..|..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45677777 8888998 88899999999986 666555557888999999999999887777778889999999999999
Q ss_pred ccccccCcccccCCCCCEEEccCCCCC
Q 037314 265 TAISQVPPSIACLNRVESLSFDRCKGR 291 (566)
Q Consensus 265 n~l~~l~~~l~~l~~L~~L~l~~~~~~ 291 (566)
|.++.+|..+.....|+.|++.+|...
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999988775444334888888877644
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=1.6e-09 Score=110.87 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=29.9
Q ss_pred cCCCCCcEEeccCCcCCc----ccccccCCCCccceeccCCccccc-----cCcccccCCCCCEEEccCCC
Q 037314 228 CNLKSLVNLYLSGCLKLE----KLPEEIGNLESLEVMLANETAISQ-----VPPSIACLNRVESLSFDRCK 289 (566)
Q Consensus 228 ~~l~~L~~L~ls~~~~l~----~~p~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~~~ 289 (566)
...++|++|++++|.... .+.+.+...++|+.|++++|.++. +...+...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 344445555555544321 123334444455555555555542 23334445666666666665
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=6.1e-08 Score=98.02 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=60.8
Q ss_pred EEcCCC-CCccccccCCCCCCCcEEecCC-CCCCCCCCC-CCCCCCccEEEeeCCCCccccchhhhhcccCcEEecCCCC
Q 037314 75 LEMPHS-NIEQLWNGVQNLAALKRLNLSY-SKQLSRIPD-ISLAFNIERLDLVGCASLIETHSSIQHLNKLVFLNLGHCI 151 (566)
Q Consensus 75 L~L~~~-~i~~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~c~ 151 (566)
++++++ +++.+|. +..+.+|+.|+|++ |.+....++ |+++++|++|+|++|...+..|..|.++++|++|+|++ +
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence 455555 6666666 66666677777764 554433333 66677777777777766555566677777777777776 4
Q ss_pred CCCccCCcC-CCCCccEEEecCCC
Q 037314 152 SLKSLPTGI-NLDSLKVLYLGGCS 174 (566)
Q Consensus 152 ~l~~lp~~~-~l~~L~~L~L~~~~ 174 (566)
.++.+|... ....|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 566666543 32236666666654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.64 E-value=3.8e-06 Score=86.39 Aligned_cols=307 Identities=11% Similarity=0.161 Sum_probs=183.1
Q ss_pred cCCCCCCC-C-CC-CCeEEEEcCCCCCcccc-ccCCCCCCCcEEecCCCC--CCCCCCC--CCCCCCccEEEeeCCCCcc
Q 037314 59 PLKSLPSK-N-IP-EHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYSK--QLSRIPD--ISLAFNIERLDLVGCASLI 130 (566)
Q Consensus 59 ~l~~lp~~-~-~~-~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~--~l~~~p~--l~~l~~L~~L~L~~c~~~~ 130 (566)
++++++.. | ++ ..|+.+.++.+ ++.+. .+|.++.+|+.+.+..+. .++.+.+ |..+.+|+.+.+..+ ...
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 45556543 3 44 35888888754 66664 467888888888887652 2334433 777778887776543 222
Q ss_pred ccchhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcc---cCCCCEEecCCCCCcccCccccC
Q 037314 131 ETHSSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEI---SCNIEHLDLKETAIEELPSSIGN 205 (566)
Q Consensus 131 ~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~~~i~~lp~~~~~ 205 (566)
.-...+..+.+|+.+.+.. .+..++... .+.+|+.+.+... +..+... ...|+.+.+..+...--...+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTT
T ss_pred ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhh
Confidence 2234577788888888854 345555444 6778888877642 2222211 13566666654433323344667
Q ss_pred CCCCcEEeccCCCCccccccc--------------ccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccC
Q 037314 206 LSRLVHLDLTNCSRLKSVSSS--------------LCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVP 271 (566)
Q Consensus 206 l~~L~~L~L~~~~~l~~lp~~--------------l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~ 271 (566)
+..++.......... ..... +.....+..+.+.. .....-...|.++..|+.+.+..+...--.
T Consensus 204 c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~ 281 (394)
T 4gt6_A 204 CFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVSIGT 281 (394)
T ss_dssp CTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCEECT
T ss_pred ccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccceecC
Confidence 777777765543221 11111 11122333443322 111112346788899999988765443334
Q ss_pred cccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chh
Q 037314 272 PSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIK 349 (566)
Q Consensus 272 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~ 349 (566)
..+.++++|+.+.+...- . ...-..|.++.+|+.++|..+ ++.|. ..+..|++|+.+.|..+ ++.+.. .+.
T Consensus 282 ~aF~~c~~L~~i~l~~~i--~---~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSRI--T---ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--C---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred cccccccccccccCCCcc--c---ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 467889999999986432 1 111223888999999999754 67765 67899999999999654 777865 589
Q ss_pred cCCCCcEecccccccCCcCCCCCCCCeEeecCCcCcccccC
Q 037314 350 QLSKLLFLTLRNCKRLQSLPELPCGSTIFARHCTSLETLSS 390 (566)
Q Consensus 350 ~l~~L~~L~L~~c~~L~~lp~lp~~~~L~~~~c~~L~~l~~ 390 (566)
++++|+.+++.++... +. .+..|.+|+.+..
T Consensus 355 ~C~~L~~i~~~~~~~~--~~--------~~~~~~~L~~i~i 385 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQ--WN--------AISTDSGLQNLPV 385 (394)
T ss_dssp TCTTCCEEEESSCHHH--HH--------TCBCCCCC-----
T ss_pred CCCCCCEEEECCceee--hh--------hhhccCCCCEEEe
Confidence 9999999999876421 11 2456777777653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.62 E-value=1.4e-05 Score=81.56 Aligned_cols=291 Identities=8% Similarity=0.090 Sum_probs=145.1
Q ss_pred cceEEEeCCccCCCCCCC-C-CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEEe
Q 037314 49 ELRYFYWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLDL 123 (566)
Q Consensus 49 ~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L 123 (566)
+|+.+.+.. .+++++.. | .+.+|+.++++.+ ++.+.. ++.++ +|+.+.+..+ +..+++ |.. .+|+.+.+
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCSEEEC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCcccccC
Confidence 456665542 35556543 3 6777888877643 666643 34554 5666666543 333433 444 36777777
Q ss_pred eCCCCccccc-hhhhhcccCcEEecCCCCCCCccCCcC--CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccC
Q 037314 124 VGCASLIETH-SSIQHLNKLVFLNLGHCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELP 200 (566)
Q Consensus 124 ~~c~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp 200 (566)
.++ ...+. ..+.+. +|+.+.+.. .++.+.... .+..++...+............. ..+......
T Consensus 121 p~~--~~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 187 (379)
T 4h09_A 121 PGA--TTEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV--------LYNKNKTIL 187 (379)
T ss_dssp CTT--CCEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE--------EEETTSSEE
T ss_pred CCc--cccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeecccce--------eccccccee
Confidence 653 22222 223333 455554432 233333322 56666666665432211100000 000000111
Q ss_pred ccccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccccCc-ccccCCC
Q 037314 201 SSIGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQVPP-SIACLNR 279 (566)
Q Consensus 201 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~ 279 (566)
..+.....+..+.+... ........+....+|+.+.+... ....-...+.++..|+.+.+..+ ++.+.. .+..+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 11222333333333321 11112223344455555555432 11111234455555665555443 333332 4555666
Q ss_pred CCEEEccCCCCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chhcCCCCcEe
Q 037314 280 VESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIKQLSKLLFL 357 (566)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L 357 (566)
|+.+.+...-. ...-..+.++.+|+.+.+.++.+..++ ..+..|++|+.+.|..+ ++.|.. .+.++++|+.+
T Consensus 265 l~~i~l~~~i~-----~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 265 LKTLNFYAKVK-----TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CCEEEECCCCS-----EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred hccccccccce-----eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 77766643211 111223667788888888888888775 56788888888888644 677754 47778888877
Q ss_pred cccccccCCcCC
Q 037314 358 TLRNCKRLQSLP 369 (566)
Q Consensus 358 ~L~~c~~L~~lp 369 (566)
.+..+ ++.|.
T Consensus 339 ~ip~~--v~~I~ 348 (379)
T 4h09_A 339 SYPKS--ITLIE 348 (379)
T ss_dssp CCCTT--CCEEC
T ss_pred EECCc--cCEEc
Confidence 77532 45554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=3.2e-08 Score=100.46 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=93.7
Q ss_pred cccCCCCCcEEeccCCCC---------cccccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCccccc-cC
Q 037314 202 SIGNLSRLVHLDLTNCSR---------LKSVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQ-VP 271 (566)
Q Consensus 202 ~~~~l~~L~~L~L~~~~~---------l~~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~-l~ 271 (566)
++..+++|+.|.+..... ...+...+..+|+|+.|.+++|.... ++. + .+++|+.|++..+.+.. ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344556666666644211 11234445667778888887763222 222 2 26777888777666541 11
Q ss_pred ccc--ccCCCCCEEEccCCCC--CCCCCCCCc-ccc--cCCCCCcEEecccCCCcc-cCC---CCCCCCCCCEEeccCCC
Q 037314 272 PSI--ACLNRVESLSFDRCKG--RPPLMSLKL-PIL--FQLQNLEYLSLVDCGITE-LPE---SLGRSPSLNYLNLAEND 340 (566)
Q Consensus 272 ~~l--~~l~~L~~L~l~~~~~--~~~~~~~~l-~~~--~~l~~L~~L~L~~~~l~~-lp~---~l~~l~~L~~L~Ls~n~ 340 (566)
..+ ..+++|+.|+|..+.. ........+ +.+ ..+++|+.|+|.+|.+.+ .+. ....+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 222 2578888888753211 000000001 112 357899999999988874 111 11357899999999998
Q ss_pred Cee-----cCcchhcCCCCcEecccccc
Q 037314 341 FEK-----IPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 341 l~~-----lp~~i~~l~~L~~L~L~~c~ 363 (566)
++. ++..+..+++|+.|+|++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 873 55666778899999998875
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=3.6e-05 Score=78.53 Aligned_cols=277 Identities=10% Similarity=0.132 Sum_probs=160.3
Q ss_pred CCCCeEEEEcCCCCCccccc-cCCCCCCCcEEecCCCCCCCCCCC--CCCCCCccEEEeeCCCCccccch-hhhhcccCc
Q 037314 68 IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYSKQLSRIPD--ISLAFNIERLDLVGCASLIETHS-SIQHLNKLV 143 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~~~~~~~-~~~~l~~L~ 143 (566)
...+|+.+.++ ..++.+.+ +|.++.+|+.++|..+ ++.+++ |.++ +|+.+.+..+ +..+.. .|.. .+|+
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCS
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCcc
Confidence 45677777776 35776654 5788888888888654 444443 6665 5666666432 333332 3333 3677
Q ss_pred EEecCCCCCCCccCCcC-CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccC-ccccCCCCCcEEeccCCCCcc
Q 037314 144 FLNLGHCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELP-SSIGNLSRLVHLDLTNCSRLK 221 (566)
Q Consensus 144 ~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~ 221 (566)
.+.+.+ .+..+.... ...+|+.+.+... +..+. ..+..+.+++...+.......
T Consensus 117 ~i~lp~--~~~~i~~~~F~~~~l~~~~~~~~----------------------v~~i~~~~f~~~~~l~~~~~~~~~~~~ 172 (379)
T 4h09_A 117 DFEFPG--ATTEIGNYIFYNSSVKRIVIPKS----------------------VTTIKDGIGYKAENLEKIEVSSNNKNY 172 (379)
T ss_dssp EEECCT--TCCEECTTTTTTCCCCEEEECTT----------------------CCEECSCTTTTCTTCCEEEECTTCSSE
T ss_pred cccCCC--ccccccccccccceeeeeeccce----------------------eeccccchhccccccccccccccccee
Confidence 776654 233333322 2223443333221 11111 124455556655554432211
Q ss_pred ------------cccccccCCCCCcEEeccCCcCCcccccccCCCCccceeccCCcccccc-CcccccCCCCCEEEccCC
Q 037314 222 ------------SVSSSLCNLKSLVNLYLSGCLKLEKLPEEIGNLESLEVMLANETAISQV-PPSIACLNRVESLSFDRC 288 (566)
Q Consensus 222 ------------~lp~~l~~l~~L~~L~ls~~~~l~~~p~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~~ 288 (566)
.....+.....+..+.+... ........+....+|+.+.+..+ +..+ ...+..+..|+.+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 173 VAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp EEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred ecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence 11222334445555554432 11222345556677777776544 3333 335677888998888654
Q ss_pred CCCCCCCCCCcccccCCCCCcEEecccCCCcccC-CCCCCCCCCCEEeccCCCCeecCc-chhcCCCCcEecccccccCC
Q 037314 289 KGRPPLMSLKLPILFQLQNLEYLSLVDCGITELP-ESLGRSPSLNYLNLAENDFEKIPS-SIKQLSKLLFLTLRNCKRLQ 366 (566)
Q Consensus 289 ~~~~~~~~~~l~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~ 366 (566)
- . ...-..+.++.+|+.+.+.. ++..++ ..+..+++|+.+.+.++.++.++. .+.++.+|+.+.|... ++
T Consensus 251 v--~---~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~ 322 (379)
T 4h09_A 251 V--T---SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LK 322 (379)
T ss_dssp C--C---EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC
T ss_pred c--c---EeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--cc
Confidence 2 1 11122367788899998864 466665 567889999999999999998865 4889999999998642 66
Q ss_pred cCCCCCCCCeEeecCCcCcccccCc
Q 037314 367 SLPELPCGSTIFARHCTSLETLSSL 391 (566)
Q Consensus 367 ~lp~lp~~~~L~~~~c~~L~~l~~~ 391 (566)
.|++- .+.+|.+|+.+.-+
T Consensus 323 ~I~~~------aF~~C~~L~~i~ip 341 (379)
T 4h09_A 323 TIQVY------AFKNCKALSTISYP 341 (379)
T ss_dssp EECTT------TTTTCTTCCCCCCC
T ss_pred EEHHH------HhhCCCCCCEEEEC
Confidence 66541 35688888877644
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=1.9e-07 Score=94.71 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCc----------cccccCCCCCCCcEEecCCCCCCCCCCCCCCCCCccEEEeeCCCCccccchhhh-
Q 037314 69 PEHLVSLEMPHSNIE----------QLWNGVQNLAALKRLNLSYSKQLSRIPDISLAFNIERLDLVGCASLIETHSSIQ- 137 (566)
Q Consensus 69 ~~~L~~L~L~~~~i~----------~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~~~~~~~~~~- 137 (566)
+++|+.|.+.....+ .+...+..+|+|+.|+|+++... .++.+ .+++|++|+|..|.........+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 456666666443221 12333466788888888877422 23334 377888888887765443333443
Q ss_pred -hcccCcEEecCCCCC-------CCccCCcC---CCCCccEEEecCCCCCCcCCcccCCCCEEecCCCCCcccCccccCC
Q 037314 138 -HLNKLVFLNLGHCIS-------LKSLPTGI---NLDSLKVLYLGGCSNLKRFPEISCNIEHLDLKETAIEELPSSIGNL 206 (566)
Q Consensus 138 -~l~~L~~L~L~~c~~-------l~~lp~~~---~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l 206 (566)
.+++|+.|+|+.+.. +..+...+ .+++|++|++.+|......+.. +.. ...+
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~----------------la~-a~~~ 278 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM----------------FLE-SDIL 278 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH----------------HHH-CSSG
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH----------------HHh-CccC
Confidence 578888888753111 11111111 3566777777665432211100 000 1234
Q ss_pred CCCcEEeccCCCCccc----ccccccCCCCCcEEeccCCcC
Q 037314 207 SRLVHLDLTNCSRLKS----VSSSLCNLKSLVNLYLSGCLK 243 (566)
Q Consensus 207 ~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~ls~~~~ 243 (566)
++|++|+|+.|..... ++..+..+++|+.|++++|..
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 5566666655543321 233334556666666666543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.06 E-value=4.7e-07 Score=82.73 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=69.0
Q ss_pred ccccCCCCCcEEeccCC-cCCc----ccccccCCCCccceeccCCccccccC-cccccCCCCCEEEccCCCCCCCCCCCC
Q 037314 225 SSLCNLKSLVNLYLSGC-LKLE----KLPEEIGNLESLEVMLANETAISQVP-PSIACLNRVESLSFDRCKGRPPLMSLK 298 (566)
Q Consensus 225 ~~l~~l~~L~~L~ls~~-~~l~----~~p~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~ 298 (566)
..+...++|++|++++| .... .+...+...++|++|++++|.+..-. ..+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l------------------------ 85 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL------------------------ 85 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH------------------------
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH------------------------
Confidence 34556677777777776 3322 12333444455555555555544110 000
Q ss_pred cccccCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEec--cCCCCee-----cCcchhcCCCCcEecccccc
Q 037314 299 LPILFQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNL--AENDFEK-----IPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 299 l~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 363 (566)
...+...++|++|+|++|.+.+ +...+...++|++|+| ++|.+.. +...+...++|++|+|++|.
T Consensus 86 ~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0113344667777777777765 4566677778888888 7788762 45566777888888888775
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2.9e-06 Score=76.01 Aligned_cols=94 Identities=14% Similarity=0.309 Sum_probs=53.6
Q ss_pred CCCCCC-CCCCeEEEEcCCCCCccc-cccCCCCCCCcEEecCCCCCCCCC--CCCCCC----CCccEEEeeCCCCccc-c
Q 037314 62 SLPSKN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYSKQLSRI--PDISLA----FNIERLDLVGCASLIE-T 132 (566)
Q Consensus 62 ~lp~~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~--p~l~~l----~~L~~L~L~~c~~~~~-~ 132 (566)
.+|..+ ...+|++||++++.|+.. ...+..+++|+.|+|++|...+.- ..++.+ ++|++|+|++|..++. -
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 455543 445788888888887632 234566777777777777544321 123332 3566777777654432 1
Q ss_pred chhhhhcccCcEEecCCCCCCCc
Q 037314 133 HSSIQHLNKLVFLNLGHCISLKS 155 (566)
Q Consensus 133 ~~~~~~l~~L~~L~L~~c~~l~~ 155 (566)
-..+..+++|++|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 23345566666666666655543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=6.2e-06 Score=73.83 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=68.7
Q ss_pred cccccCCCCCCCcEEecCCCCCCCC-CCCCCCCCCccEEEeeCCCCccc-cchhhhhc----ccCcEEecCCCCCCCc--
Q 037314 84 QLWNGVQNLAALKRLNLSYSKQLSR-IPDISLAFNIERLDLVGCASLIE-THSSIQHL----NKLVFLNLGHCISLKS-- 155 (566)
Q Consensus 84 ~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~~~~~-~~~~~~~l----~~L~~L~L~~c~~l~~-- 155 (566)
.+|.....-.+|+.||+++|.+... +..+.++++|++|+|++|..++. --..+..+ ++|++|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4555444445799999999985432 34578899999999999986553 22334443 4799999999988874
Q ss_pred cCCcCCCCCccEEEecCCCCCCc
Q 037314 156 LPTGINLDSLKVLYLGGCSNLKR 178 (566)
Q Consensus 156 lp~~~~l~~L~~L~L~~~~~l~~ 178 (566)
+.....+++|+.|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 22222689999999999987764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=9.3e-07 Score=80.75 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=76.0
Q ss_pred CccccCCCCCcEEeccCC-CCcc----cccccccCCCCCcEEeccCCcCCcc----cccccCCCCccceeccCCccccc-
Q 037314 200 PSSIGNLSRLVHLDLTNC-SRLK----SVSSSLCNLKSLVNLYLSGCLKLEK----LPEEIGNLESLEVMLANETAISQ- 269 (566)
Q Consensus 200 p~~~~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~ls~~~~l~~----~p~~l~~l~~L~~L~l~~n~l~~- 269 (566)
...+...+.|++|++++| .... .+...+...++|++|+|++|..... +.+.+...++|++|++++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344677899999999998 5432 3455667789999999999976432 33445555677777777777763
Q ss_pred ----cCcccccCCCCCEEEccCCCCCCCCCCCCcccccCCCCCcEEec--ccCCCcc-----cCCCCCCCCCCCEEeccC
Q 037314 270 ----VPPSIACLNRVESLSFDRCKGRPPLMSLKLPILFQLQNLEYLSL--VDCGITE-----LPESLGRSPSLNYLNLAE 338 (566)
Q Consensus 270 ----l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~l~~L~~L~L--~~~~l~~-----lp~~l~~l~~L~~L~Ls~ 338 (566)
+...+. ..++|++|+| ++|.+.+ +...+...++|++|+|++
T Consensus 109 g~~~l~~~L~----------------------------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 109 GILALVEALQ----------------------------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHGGG----------------------------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHH----------------------------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 223333 3445666666 5565554 334445566788888888
Q ss_pred CCCe
Q 037314 339 NDFE 342 (566)
Q Consensus 339 n~l~ 342 (566)
|.+.
T Consensus 161 n~i~ 164 (185)
T 1io0_A 161 TQQG 164 (185)
T ss_dssp SSHH
T ss_pred CCCC
Confidence 8764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=4.6e-05 Score=73.33 Aligned_cols=78 Identities=26% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCCCeEEEEcCCCCCcccc---ccCCCCCCCcEEecCCCCCCCCCCCCCCCC--CccEEEeeCCCCccccc-------hh
Q 037314 68 IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYSKQLSRIPDISLAF--NIERLDLVGCASLIETH-------SS 135 (566)
Q Consensus 68 ~~~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~--~L~~L~L~~c~~~~~~~-------~~ 135 (566)
++++|++|+|++|+|..++ ..+..+++|+.|+|++|.+... .++..+. +|++|+|++|......| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3556666666666666543 3345666666666666664432 2222222 66666666666554333 23
Q ss_pred hhhcccCcEEe
Q 037314 136 IQHLNKLVFLN 146 (566)
Q Consensus 136 ~~~l~~L~~L~ 146 (566)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=0.0001 Score=70.87 Aligned_cols=58 Identities=24% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCCCcEEecccCCCccc---CCCCCCCCCCCEEeccCCCCeecCcchhcCC--CCcEecccccc
Q 037314 305 LQNLEYLSLVDCGITEL---PESLGRSPSLNYLNLAENDFEKIPSSIKQLS--KLLFLTLRNCK 363 (566)
Q Consensus 305 l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~c~ 363 (566)
+++|+.|+|++|++..+ |..+..+++|+.|+|++|.++.+. .+..+. +|++|+|++|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 34445555555544442 233344555555555555555442 222222 55555555555
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.99 E-value=0.0017 Score=59.06 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=37.9
Q ss_pred cCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEeccCC---CCe-----ecCcchhcCCCCcEeccccc
Q 037314 303 FQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNLAEN---DFE-----KIPSSIKQLSKLLFLTLRNC 362 (566)
Q Consensus 303 ~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n---~l~-----~lp~~i~~l~~L~~L~L~~c 362 (566)
..-+.|++|+|++|.|.+ +-+.+..-+.|++|+|++| .+. .+...+..-+.|+.|+++.+
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344667777777777765 4455666667888888765 333 23444555667777777654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.91 E-value=0.012 Score=49.75 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.3
Q ss_pred cEEecccCCCc--ccCCCCCCCCCCCEEeccCCCCeecCcc-hhcCCCCcEecccccc
Q 037314 309 EYLSLVDCGIT--ELPESLGRSPSLNYLNLAENDFEKIPSS-IKQLSKLLFLTLRNCK 363 (566)
Q Consensus 309 ~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 363 (566)
..++.++.+++ .+|..+ .++|+.|+|++|.|+.+|.. +..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36677777777 677543 24688888888888888765 6778888888888876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.31 E-value=0.025 Score=47.75 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=32.7
Q ss_pred EEEeCCccCC--CCCCCCCCCCeEEEEcCCCCCcccccc-CCCCCCCcEEecCCCC
Q 037314 52 YFYWDGYPLK--SLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYSK 104 (566)
Q Consensus 52 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~ 104 (566)
.++.++..++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4566666666 666543 34567777777777766544 4566666666666665
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.73 E-value=0.0042 Score=56.44 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=47.1
Q ss_pred ccCCCCCcEEecccCCCcc-----cCCCCCCCCCCCEEeccCCCCe-----ecCcchhcCCCCcEecccccc
Q 037314 302 LFQLQNLEYLSLVDCGITE-----LPESLGRSPSLNYLNLAENDFE-----KIPSSIKQLSKLLFLTLRNCK 363 (566)
Q Consensus 302 ~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 363 (566)
+..-..|+.|+|++|.+.+ +.+.+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 4445788899999998876 3455556678999999999987 445566667789999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.42 E-value=1.1e+02 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=21.1
Q ss_pred ccCCCCCcEEeccCCCCcccccccccCCCCCcEEeccC
Q 037314 203 IGNLSRLVHLDLTNCSRLKSVSSSLCNLKSLVNLYLSG 240 (566)
Q Consensus 203 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ls~ 240 (566)
|.++.+|+.+.|-.. ....-..+|.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 566677777766542 2222234566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.42 E-value=1.3e+02 Score=23.17 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=14.2
Q ss_pred CCCCCCCcEEecCCCCCCCCCC--CCCCCCCccEEEee
Q 037314 89 VQNLAALKRLNLSYSKQLSRIP--DISLAFNIERLDLV 124 (566)
Q Consensus 89 ~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~ 124 (566)
|.++.+|+.+.|-.+ ++.+. .|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEc
Confidence 344444444444433 22222 24444444444443
Done!