BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037315
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 194 bits (494), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 187/665 (28%), Positives = 294/665 (44%), Gaps = 87/665 (13%)
Query: 14 LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH--SRLK 71
L + + L+ L+VSSN L S L S+E L LS N + + + LK
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 178
Query: 72 IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
N I+ + S + ++S + S+ FL L+ + S +
Sbjct: 179 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNK 231
Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
++G+F + + T+L+ L++ ++ GP +P + L+ L ++ N F G IP +
Sbjct: 232 LSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 192 ILPRLISFNISMNALDGSIPSSFG-------------------------NMNLLQILDLS 226
L ++S N G++P FG M L++LDLS
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-----NLRWLQLEGNHFVG 281
N+ +GE+PE L +L L LS+N+ G + NL L+ L L+ N F G
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTG 405
Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
+IP +LS CS L L+L+ N LSG IP LG+L+ L + + N LEG IP E ++ +L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
+ L + N+++G +PS NC++L + LS N L G
Sbjct: 466 ETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLSNNRLTG 501
Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCF--DNTK 459
IP WI L L+ L L NN+ G +P +G IP + K
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 460 LHES--------YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI-AYIFQGKV 510
+ + Y + ++ ++ QG +++ NI + ++ G
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 511 LSLLSG------LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
LD+S N L G+IP ++G++ + LNL HN+++G IP +L+ +
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
LDLS NKL+G+IP + L L ++ NNLSG IPE QF TF + N LCG
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 740
Query: 625 PLPIC 629
PLP C
Sbjct: 741 PLPRC 745
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 215/480 (44%), Gaps = 65/480 (13%)
Query: 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
++ N +P+ L + ++L+ LD+S N+L+G S + + T ++ L++S+N F PI
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIP 261
Query: 61 LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF----- 115
PL L+ N +I L+ L L LS ++ G P F
Sbjct: 262 PLPL---KSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 116 -------------------LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDS 156
L L+ + S + +GE P L + L L L +++
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 157 LAGPF--RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF 214
+GP L + L+ L + NN F G IP + + L+S ++S N L G+IPSS
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL 435
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G+++ L+ L L N L GEIP+ L M LE L L N L G + S N NL W+ L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334
N GEIP+ + + +L L L+NNS SG IP LG+ LI + + N G IP
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 335 FCHLYSLQILDISDNNISGSLPSCFHPLSIT-QVHLSKNMLHGQ---------------- 377
Q I+ N I+G + + H + N+L Q
Sbjct: 555 MFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 378 -----LKGG----TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
+ GG TF N S++ LD+SYN+L+G IP I + L L LG+N++ G +P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 150/499 (30%), Positives = 219/499 (43%), Gaps = 68/499 (13%)
Query: 153 VNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV--EIGDILPRLISFNISMNALDGSI 210
+N S++G L LD+S N+ G + +G L N+S N LD
Sbjct: 86 INGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPG 139
Query: 211 PSSFG-NMNLLQILDLSNNQLTGE--IPEHLAMGCVNLEFLALSNNSLKGHM-FSRNFNL 266
S G +N L++LDLS N ++G + L+ GC L+ LA+S N + G + SR
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---C 196
Query: 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326
+NL +L + N+F IP L CS+L+ L ++ N LSG R + T L + + N
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
GPIP L SLQ L +++N +G +P + L G C
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIP---------------DFLSGA--------C 290
Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXX 446
+L LDLS N G++P + S L L L +NN GE+P+
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 447 X-HGLIPPCFDNTK-----LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
G +P N L S NN S P IL ++ + + +QE +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNP---KNTLQELYLQNNG 402
Query: 501 NIAYIFQGKV------LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
F GK+ S L L LS N L G IP +G+L++++ L L N L G IP
Sbjct: 403 -----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 555 TFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614
+K +E+L L +N L G+IP L L S++ N L+GEIP+W +
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 615 YEGNTFLCGLP--LPICRS 631
N+F +P L CRS
Sbjct: 518 LSNNSFSGNIPAELGDCRS 536
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 157/610 (25%), Positives = 245/610 (40%), Gaps = 132/610 (21%)
Query: 25 VSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS-LEPLFNHSRLKIFYADNNPINAK 83
+S++ + GS+S S+ L LS N P++ L L + S LK +N ++
Sbjct: 81 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 84 ITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLEN 143
S L ++ LS +S G V W+L +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVV--------------------------GWVLSD 172
Query: 144 NT-KLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNIS 202
+L+ L++ + ++G + + +L LDVS+NNF IP
Sbjct: 173 GCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPF--------------- 215
Query: 203 MNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSR 262
G+ + LQ LD+S N+L+G+ ++ C L+ L +S+N G +
Sbjct: 216 -----------LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPI--P 261
Query: 263 NFNLINLRWLQLEGNHFVGEIPQSLS-KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII 321
L +L++L L N F GEIP LS C +L GL L+ N G +P + G+ + L +
Sbjct: 262 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 322 MPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
+ N+ G +P++ + L++LD+S N SG LP LS
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS----------------- 364
Query: 381 GTFFNCSSLVTLDLSYNLLNGSI-PDWIDG-LSQLSHLILGNNNLEGEVPVXXXXXXXXX 438
+SL+TLDLS N +G I P+ + L L L NN G++P
Sbjct: 365 ------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-------- 410
Query: 439 XXXXXXXXXHGLIPPCFDNTKLHESYNNSS----SPDEQFKILFSIKGHQGHVEKKI-QE 493
+ C + LH S+N S S L +K +E +I QE
Sbjct: 411 ------------LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 494 FFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP 553
T L L L N L G IP + N T + ++LS+N LTG IP
Sbjct: 459 LMYVKT--------------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 554 STFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNEN 613
L+ + L LS N +G IP +L + + L + N +G IP A F ++
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-----AMFKQS 559
Query: 614 SYEGNTFLCG 623
F+ G
Sbjct: 560 GKIAANFIAG 569
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 179/401 (44%), Gaps = 34/401 (8%)
Query: 4 NELRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
N G LP L M L++LD+S N+ +G + S S+ L LS+N+F PI L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 383
Query: 63 PLFNHSR--LKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
L + + L+ Y NN KI + + + +L SL LS +Y G T P L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSG-TIPSSLGSLS 439
Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
L D+ + GE P L+ T L L L + L G + + +L + +SNN
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL-- 238
G IP IG L L +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 499 LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 239 AMGCVNLEFLA------LSNNSLKGHMFSRNFNLINLRWLQLE--------------GNH 278
G + F+A + N+ +K NL+ + ++ E
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAG-NLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHL 338
+ G + S+ L ++ N LSG IP+ +G++ +L + + N + G IP E L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 339 YSLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQL 378
L ILD+S N + G +P L+ +T++ LS N L G +
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 125/311 (40%), Gaps = 69/311 (22%)
Query: 4 NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP 63
N+L G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F I E
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAE- 530
Query: 64 LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD-- 121
L + L + N N I + + K + + +++Y ++D
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----------ANFIAGKRYVYIKNDGM 580
Query: 122 LEDVHFSRIQMNGEFPNWLLE--NNTKLRQLSLVNDSLAGPFRLP-IHSHRHLRLLDVSN 178
++ H + + EF E N R + + G P ++ + LD+S
Sbjct: 581 KKECHGAGNLL--EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
N G+IP EIG +P L N+ N + GSIP G++ L ILDLS+
Sbjct: 639 NMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS----------- 686
Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
N L G IPQ++S + L + L
Sbjct: 687 --------------NKLDGR------------------------IPQAMSALTMLTEIDL 708
Query: 299 NNNSLSGKIPR 309
+NN+LSG IP
Sbjct: 709 SNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 187/665 (28%), Positives = 294/665 (44%), Gaps = 87/665 (13%)
Query: 14 LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH--SRLK 71
L + + L+ L+VSSN L S L S+E L LS N + + + LK
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 72 IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
N I+ + S + ++S + S+ FL L+ + S +
Sbjct: 182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNK 234
Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
++G+F + + T+L+ L++ ++ GP +P + L+ L ++ N F G IP +
Sbjct: 235 LSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 192 ILPRLISFNISMNALDGSIPSSFG-------------------------NMNLLQILDLS 226
L ++S N G++P FG M L++LDLS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-----NLRWLQLEGNHFVG 281
N+ +GE+PE L +L L LS+N+ G + NL L+ L L+ N F G
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTG 408
Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
+IP +LS CS L L+L+ N LSG IP LG+L+ L + + N LEG IP E ++ +L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
+ L + N+++G +PS NC++L + LS N L G
Sbjct: 469 ETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLSNNRLTG 504
Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCF--DNTK 459
IP WI L L+ L L NN+ G +P +G IP + K
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 460 LHES--------YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI-AYIFQGKV 510
+ + Y + ++ ++ QG +++ NI + ++ G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 511 LSLLSG------LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
LD+S N L G+IP ++G++ + LNL HN+++G IP +L+ +
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
LDLS NKL+G+IP + L L ++ NNLSG IPE QF TF + N LCG
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743
Query: 625 PLPIC 629
PLP C
Sbjct: 744 PLPRC 748
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 215/480 (44%), Gaps = 65/480 (13%)
Query: 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
++ N +P+ L + ++L+ LD+S N+L+G S + + T ++ L++S+N F PI
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIP 264
Query: 61 LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF----- 115
PL L+ N +I L+ L L LS ++ G P F
Sbjct: 265 PLPL---KSLQYLSLAENKFTGEIP--DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 116 -------------------LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDS 156
L L+ + S + +GE P L + L L L +++
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 157 LAGPF--RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF 214
+GP L + L+ L + NN F G IP + + L+S ++S N L G+IPSS
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL 438
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G+++ L+ L L N L GEIP+ L M LE L L N L G + S N NL W+ L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334
N GEIP+ + + +L L L+NNS SG IP LG+ LI + + N G IP
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 335 FCHLYSLQILDISDNNISGSLPSCFHPLSIT-QVHLSKNMLHGQ---------------- 377
Q I+ N I+G + + H + N+L Q
Sbjct: 558 MFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 378 -----LKGG----TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
+ GG TF N S++ LD+SYN+L+G IP I + L L LG+N++ G +P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 150/499 (30%), Positives = 219/499 (43%), Gaps = 68/499 (13%)
Query: 153 VNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV--EIGDILPRLISFNISMNALDGSI 210
+N S++G L LD+S N+ G + +G L N+S N LD
Sbjct: 89 INGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPG 142
Query: 211 PSSFG-NMNLLQILDLSNNQLTGE--IPEHLAMGCVNLEFLALSNNSLKGHM-FSRNFNL 266
S G +N L++LDLS N ++G + L+ GC L+ LA+S N + G + SR
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---C 199
Query: 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326
+NL +L + N+F IP L CS+L+ L ++ N LSG R + T L + + N
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
GPIP L SLQ L +++N +G +P + L G C
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIP---------------DFLSGA--------C 293
Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXX 446
+L LDLS N G++P + S L L L +NN GE+P+
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 447 X-HGLIPPCFDNTK-----LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
G +P N L S NN S P IL ++ + + +QE +
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNP---KNTLQELYLQNNG 405
Query: 501 NIAYIFQGKVLSLLS------GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
F GK+ LS L LS N L G IP +G+L++++ L L N L G IP
Sbjct: 406 -----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 555 TFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614
+K +E+L L +N L G+IP L L S++ N L+GEIP+W +
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 615 YEGNTFLCGLP--LPICRS 631
N+F +P L CRS
Sbjct: 521 LSNNSFSGNIPAELGDCRS 539
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 179/401 (44%), Gaps = 34/401 (8%)
Query: 4 NELRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
N G LP L M L++LD+S N+ +G + S S+ L LS+N+F PI L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 386
Query: 63 PLFNHSR--LKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
L + + L+ Y NN KI + + + +L SL LS +Y G T P L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSG-TIPSSLGSLS 442
Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
L D+ + GE P L+ T L L L + L G + + +L + +SNN
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL-- 238
G IP IG L L +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 502 LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 239 AMGCVNLEFLA------LSNNSLKGHMFSRNFNLINLRWLQLE--------------GNH 278
G + F+A + N+ +K NL+ + ++ E
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAG-NLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHL 338
+ G + S+ L ++ N LSG IP+ +G++ +L + + N + G IP E L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 339 YSLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQL 378
L ILD+S N + G +P L+ +T++ LS N L G +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 125/311 (40%), Gaps = 69/311 (22%)
Query: 4 NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP 63
N+L G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F I E
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAE- 533
Query: 64 LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD-- 121
L + L + N N I + + K + + +++Y ++D
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----------ANFIAGKRYVYIKNDGM 583
Query: 122 LEDVHFSRIQMNGEFPNWLLE--NNTKLRQLSLVNDSLAGPFRLP-IHSHRHLRLLDVSN 178
++ H + + EF E N R + + G P ++ + LD+S
Sbjct: 584 KKECHGAGNLL--EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
N G+IP EIG +P L N+ N + GSIP G++ L ILDLS+
Sbjct: 642 NMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS----------- 689
Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
N L G IPQ++S + L + L
Sbjct: 690 --------------NKLDGR------------------------IPQAMSALTMLTEIDL 711
Query: 299 NNNSLSGKIPR 309
+NN+LSG IP
Sbjct: 712 SNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 138/340 (40%), Gaps = 87/340 (25%)
Query: 298 LNNNSLSG-------KIPRWLGNLTWLIHI-IMPKNHLEGPIPVEFCHLYSLQILDISDN 349
+NN LSG IP L NL +L + I N+L GPIP L L L I+
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 350 NISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDG 409
N+SG++P Q+K +LVTLD SYN L+G++P I
Sbjct: 112 NVSGAIPDFLS----------------QIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 410 LSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSS 469
L L + N + G IP +SY + S
Sbjct: 148 LPNLVGITFDGNRIS------------------------GAIP---------DSYGSFS- 173
Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529
K+ S+ + + KI F N+A++ DLS N L G
Sbjct: 174 -----KLFTSMTISRNRLTGKIPP--TFANLNLAFV------------DLSRNMLEGDAS 214
Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
G+ Q ++L+ N+L + K + LDL N++ G +P L +LK L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC 629
+V++NNL GEIP+ F+ ++Y N LCG PLP C
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 210 IPSSFGNMNLLQILDLSN-NQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN 268
IPSS N+ L L + N L G IP +A L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 269 LRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328
L +L + + G IP LS+ +L L + N+LSG +P + +L L+ I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 329 GPIPVEFCHLYSL-QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ---------- 377
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 378 ------LKGGTFFN------CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG 425
K F+ +L LDL N + G++P + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 426 EVP 428
E+P
Sbjct: 283 EIP 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 5/203 (2%)
Query: 112 FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHL 171
P + L ++ + ++G P++L + T L L ++L+G I S +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
+ N G IP G S IS N L G IP +F N+N L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 232 GEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCS 291
G+ L N + + L+ NSL + + NL L L N G +PQ L++
Sbjct: 211 GDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 292 SLEGLYLNNNSLSGKIPRWLGNL 314
L L ++ N+L G+IP+ GNL
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNL 290
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 536 TRIQTLNLSHNNLTGL-------IPSTFSNLKQIESLDLS-YNKLNGKIPHQLVELKELA 587
T QT +++ +L+GL IPS+ +NL + L + N L G IP + +L +L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 588 VFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSP 632
+ + N+SG IP++ +Q T + N LP I P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
RLLD+ N + E P L ++ N + P +F N+ L+ L L +N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 232 GEIPEHLAMGCVNLEFLALSNNS---LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
IP + G NL L +S N L +MF +L NL+ L++ N V ++ S
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRAFS 149
Query: 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
+SLE L L +L+ L +L LI + + ++ F LY L++L+IS
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 349 -NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT---LDLSYN 397
+ P+C + L++T + ++ H L + LV L+LSYN
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
L L+L+ N + P NL ++TL L N L + F+ L + LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 574 GKIPHQLVELKELAVFSVAYNNL 596
+ + +L L V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
+F G LS L+ LD+S NK++ + +L +++L + N+L + FS L +E
Sbjct: 99 VFTG--LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598
L L L L L L V + + N++
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELA 587
+P ++ N + ++LS+N ++ L +FSN+ Q+ +L LSYN+L P LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 588 VFSVAYNNLSGEIPE 602
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
L L+GN F +P+ LS L + L+NN +S + N+T L+ +I+ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 332 PVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
P F L SL++L + N+IS F+ LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
L+ +DLS N++ N+T++ TL LS+N L + P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 574 GKIPHQLVELKELAVFSVAYNNL 596
+L L+ ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
+T + LS N + L +F N + L+TL LSYN L P DGL L L L N++
Sbjct: 56 LTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 192 ILPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
+LP+ I +++ LDG+ +P N L ++DLSNN+++ + L
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLT 82
Query: 248 LALSNNSLKGHMFSRNFN-LINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLYLNNNSLSG 305
L LS N L+ + R F+ L +LR L L GN + +P+ + + S+L L + N L
Sbjct: 83 LILSYNRLRC-IPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYC 140
Query: 306 KIPRWLGNLTWL 317
N+ WL
Sbjct: 141 DC-----NMQWL 147
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 165 IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILD 224
+ +++HL L+D+SNN + + +L++ +S N L P +F + L++L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 225 LSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272
L N ++ +PE L LA+ N L + N++WL
Sbjct: 109 LHGNDIS-VVPEGAFNDLSALSHLAIGANPL--------YCDCNMQWL 147
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 514 LSGLDLSCNKLIGH--IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
L LDLS N + Q+ NL+ +QTLNLSHN GL F Q+E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 572 LNGKIPHQLVE-LKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG 623
L+ P + L L V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS-ITQVHL 369
L LT L ++I+ N L+ F L +L+ L + +N + F L+ +T ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLE 424
+ N L L G F ++L LDLSYN L S+P+ + D L+QL L L N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG---KIPHQLVELKELAVF 589
LT + LNL+HN L L F L + LDLSYN+L + +L +LK+L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ 229
+L+ L + N Q +P + D L L N++ N L F + L LDLS NQ
Sbjct: 110 NLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 230 LTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGNHFVGEIP 284
L +PE + L+ L L N LK +F R L +L+++ L N + P
Sbjct: 169 LQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR---LTSLQYIWLHDNPWDCTCP 222
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 11/196 (5%)
Query: 160 PFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNAL--DGSIPSSFGNM 217
P +P + R L++ +N Q +P + D L +L ++S N L G S
Sbjct: 23 PTGIPSSATR----LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNFNLINLRWLQLEG 276
L+ LDLS N + L G LE L +++LK FS +L NL +L +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTWLIHIIMPKNHLEGPIPVEF 335
H + SSLE L + NS +P L L + + + LE P F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 336 CHLYSLQILDISDNNI 351
L SLQ+L++S NN
Sbjct: 196 NSLSSLQVLNMSHNNF 211
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 574 GKIPHQLVEL-KELAVFSVAYNNLS 597
+L LA ++ N+ +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 31/236 (13%)
Query: 214 FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWL 272
F + L++L+L+ N++ +I + G NL+ L LS N L G ++S NF L + ++
Sbjct: 286 FETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYI 343
Query: 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG-----KIPRWL-----------GNLTW 316
L+ NH Q+ L+ L L +N+L+ IP NLT
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 317 -LIHIIMPKNHLEGPIPVEF-CHLYSLQILDISDNNI---SGSLPSCFHPLSITQVHLSK 371
LIH + +N LE + F + LQIL ++ N SG +P S+ Q+ L +
Sbjct: 404 NLIH--LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGE 460
Query: 372 NMLH----GQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
NML +L F S L L L++N LN P L+ L L L +N L
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
+ ++ L+LSH + L F LK ++ L+L+YNK+N L L V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 596 LSGEI 600
L GE+
Sbjct: 325 LLGEL 329
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 534 NLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL--KELAVFS 590
NL + L+LS N + L + +F L ++S+D S N++ H+L L K L+ FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 591 VAYNNLSGEIP-EW 603
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
L+ +Q L L+HN L L P FS+L + L L+ N+L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL----EGPIPVEFCHLYSLQILDI 346
S L+ LYLN+N L+ P +LT L + + N L +P +L+ILDI
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDI 533
Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFN 385
S N + P F LS+ + +K + +L TF N
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECEL--STFIN 570
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 506 FQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL 565
F G S + LDLS + L ++ LNL++N + + F L ++ L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 566 DLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
+LSYN L L ++A + N+++
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 537 RIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
+IQ + + +NNL + ++ K++ L+ YN+L GK+P E+K LA ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQ 364
Query: 596 LSGEIPEWKAQFATFNE 612
++ EIP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNL-KQIESLDLSYNKL 572
L L+ N+L G +P G+ ++ +LNL++N +T IP+ F +Q+E+L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL 389
Query: 573 NGKIPHQLVELKELAVFSV---AYNNL 596
IP+ + + K ++V S +YN +
Sbjct: 390 K-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
N+ +LAL N L H S L NL +L L GN K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
LT L ++ + N L+ F L +L LD+ DNN SLP
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPE------ 174
Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
G F + L L L+ N L S+PD + D L+ L+H+ L NN
Sbjct: 175 -----------------GVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS-ITQVHL 369
L LT L ++I+ N L+ F L +L+ L + +N + F L+ +T ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLE 424
N L L G F ++L LDL N L S+P+ + D L+QL L L +N L+
Sbjct: 141 YHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
T I LNL+HN L L + F+ Q+ SLD+ +N ++ P +L L V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 596 LS 597
LS
Sbjct: 95 LS 96
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
S L+ LD+ N + P L ++ LNL HN L+ L TF+ + L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 572 LNGKIPHQLVELKELAVFSVAYNNLSG 598
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 318 IHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCF-HPLSITQVHLSKNML- 374
+HI+ +++ IPVE F L+ L+I+D+ NN++ S F + +S+ ++L KN++
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 375 --HGQLKGGTFFNCSSLVTLDLSYN 397
++ G F N L LD+ +N
Sbjct: 608 SVEKKVFGPAFRN---LTELDMRFN 629
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 60/263 (22%)
Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
+L S ++ N + P + +L++L+L +N+L+ ++ + C NL L L +NS
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNS 118
Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 314
++ +++ N FV K +L L L++N LS L
Sbjct: 119 IQ----------------KIKNNPFV--------KQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 315 TWLIHIIMPKNHLEGPIPVEFCHLY---SLQILDISDNNISGSLPSCFHPL--------- 362
L +++ N ++ + E ++ SL+ L++S N I P CFH +
Sbjct: 155 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 363 -------------------SITQVHLSKNMLHGQLKGGTFFNC--SSLVTLDLSYNLLNG 401
SI + LS + L TF ++L LDLSYN LN
Sbjct: 214 NVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNV 272
Query: 402 SIPDWIDGLSQLSHLILGNNNLE 424
D L QL + L NN++
Sbjct: 273 VGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 140 LLENNTKLRQLSLVNDSLA---------GPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIG 190
+LE KL L L +++LA GP + HL +L++ +N F IPVE+
Sbjct: 509 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNGFD-EIPVEVF 566
Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
L L ++ +N L+ S F N L+ L+L N +T
Sbjct: 567 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 531 QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE-LKELAVF 589
Q+ NL +Q LNLS+N GL F Q+E LD+++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG 623
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN--HFVG-EIPQSLSKCSSLEGLYLNN 300
NLE L L +N + NF NL+ L + N H++ + SL + ++L L N
Sbjct: 129 NLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL-SLNFNG 187
Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQIL------DISDNNISGS 354
N + G P ++ + + L I + +LQ L D D ++ +
Sbjct: 188 NDIKGIEPGAF--ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSA 245
Query: 355 LPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414
+S+ ++L K+ L TF + + LDL+ LNG +P I+G++ L
Sbjct: 246 TFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLK 303
Query: 415 HLILGNNNLE 424
L+L N+ +
Sbjct: 304 KLVLNANSFD 313
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
T I LNL+HN L L + F+ Q+ SLD+ +N ++ P +L L V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 596 LS 597
LS
Sbjct: 90 LS 91
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
S L+ LD+ N + P L ++ LNL HN L+ L TF+ + L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 572 LNGKIPHQLVELKELAVFSVAYNNLSG 598
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 318 IHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCF-HPLSITQVHLSKNML- 374
+HI+ +++ IPVE F L+ L+I+D+ NN++ S F + +S+ ++L KN++
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 375 --HGQLKGGTFFNCSSLVTLDLSYN 397
++ G F N L LD+ +N
Sbjct: 603 SVEKKVFGPAFRN---LTELDMRFN 624
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 60/263 (22%)
Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
+L S ++ N + P + +L++L+L +N+L+ ++ + C NL L L +NS
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNS 113
Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 314
++ +++ N FV K +L L L++N LS L
Sbjct: 114 IQ----------------KIKNNPFV--------KQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 315 TWLIHIIMPKNHLEGPIPVEFCHLY---SLQILDISDNNISGSLPSCFHPL--------- 362
L +++ N ++ + E ++ SL+ L++S N I P CFH +
Sbjct: 150 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 363 -------------------SITQVHLSKNMLHGQLKGGTFFNC--SSLVTLDLSYNLLNG 401
SI + LS + L TF ++L LDLSYN LN
Sbjct: 209 NVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNV 267
Query: 402 SIPDWIDGLSQLSHLILGNNNLE 424
D L QL + L NN++
Sbjct: 268 VGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 140 LLENNTKLRQLSLVNDSLA---------GPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIG 190
+LE KL L L +++LA GP + HL +L++ +N F IPVE+
Sbjct: 504 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNGFD-EIPVEVF 561
Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
L L ++ +N L+ S F N L+ L+L N +T
Sbjct: 562 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
T I LNL+HN L L + F+ Q+ SLD+ +N ++ P +L L V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 596 LS 597
LS
Sbjct: 85 LS 86
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
S L+ LD+ N + P L ++ LNL HN L+ L TF+ + L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 572 LNGKIPHQLVELKELAVFSVAYNNLSG 598
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 318 IHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCF-HPLSITQVHLSKNML- 374
+HI+ +++ IPVE F L+ L+I+D+ NN++ S F + +S+ ++L KN++
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 375 --HGQLKGGTFFNCSSLVTLDLSYN 397
++ G F N L LD+ +N
Sbjct: 598 SVEKKVFGPAFRN---LTELDMRFN 619
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 14 LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
LA +++L++L + NQ+T + SPL LT+++ LS+ NN + L PL N S+L
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 74 YADNNPI 80
AD+N I
Sbjct: 185 RADDNKI 191
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL- 572
L+ LDLS +L L R+Q LN+SHNNL L S ++ L + +LD S+N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 573 --NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICR 630
G + H K LA F++ N+++ K F + E FL + C
Sbjct: 530 TSKGILQH---FPKSLAFFNLTNNSVACICEHQK-----FLQWVKEQKQFLVNVEQMTCA 581
Query: 631 SPTTMSEASI 640
+P M+ + +
Sbjct: 582 TPVEMNTSLV 591
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 532 VGNLTRIQTLNLSHNNL-TGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
+G L ++ LN++HN + + +P+ FSNL + +DLSYN + + L L+E
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL---NGKIPHQLVELKELAVFSV 591
L R+Q LN+SHNNL L S ++ L + +LD S+N++ G + H K LA F++
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH---FPKSLAFFNL 552
Query: 592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASI 640
N+++ K F + E FL + C +P M+ + +
Sbjct: 553 TNNSVACICEHQK-----FLQWVKEQKQFLVNVEQMTCATPVEMNTSLV 596
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 532 VGNLTRIQTLNLSHNNL-TGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
+G L ++ LN++HN + + +P+ FSNL + +DLSYN + + L L+E
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256
+S N + ++D P++F + L L L L E+ L G L++L L +N+L+
Sbjct: 87 LSDNAQLRSVD---PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142
Query: 257 GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW 316
+L NL L L GN ++ SL+ L L+ N ++ P +L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 317 LIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDN 349
L+ + + N+L +P E L +LQ L ++DN
Sbjct: 203 LMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 333 VEFCHLYSLQILDISDNNISGSL-PSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLV 390
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F ++L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132
Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
L L N L D L L+HL L N +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256
+S N + ++D P++F + L L L L E+ L G L++L L +N+L+
Sbjct: 86 LSDNAQLRSVD---PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 141
Query: 257 GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW 316
+L NL L L GN ++ SL+ L L+ N ++ P +L
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Query: 317 LIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDN 349
L+ + + N+L +P E L +LQ L ++DN
Sbjct: 202 LMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 333 VEFCHLYSLQILDISDNNISGSL-PSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLV 390
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F ++L
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 131
Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
L L N L D L L+HL L N +
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 111/268 (41%), Gaps = 14/268 (5%)
Query: 162 RLP---IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMN 218
RLP + L +LD N+ P E+ ILP L N+ N L +F
Sbjct: 39 RLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCT 97
Query: 219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNH 278
L LDL +N + +I + NL L LS+N L L NL+ L L N
Sbjct: 98 NLTELDLMSNSI-HKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 279 FVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC 336
+ + L SSL L L++N L P + L +++ L + + C
Sbjct: 157 ILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 337 ---HLYSLQILDISDNNISGSLPSCFHPLS---ITQVHLSKNMLHGQLKGGTFFNCSSLV 390
S+Q L +++N + + S F L +TQ+ LS N LH + G+F SL
Sbjct: 217 WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLR 275
Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLIL 418
L L YN + P GLS L +L L
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 521 CNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579
C+ L + HIP + + I LNL+HN L L P+ F+ Q+ LD +N ++ P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 580 LVELKELAVFSVAYNNLSGEIPEWKAQFAT 609
L L V ++ +N LS +I + F T
Sbjct: 69 CQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLK--QIESLDLSYNKLNGKIPHQLVELKELAVFSVAY 593
T IQ L+L++N L STFS LK + LDLSYN L+ L L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 594 NNLSGEIPE 602
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 52/330 (15%)
Query: 145 TKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIG-------------- 190
T L +L L+++S+ P + ++L LD+S+N G ++G
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN---GLSSTKLGTGVQLENLQELLLA 153
Query: 191 --DILP------------RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
IL L ++S N L P F + L L L+N QL + E
Sbjct: 154 KNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTE 213
Query: 237 HLA--MGCVNLEFLALSNNSLKGHMFS--RNFNLINLRWLQLEGN--HFVGEIPQSLSKC 290
L + +++ L+L+NN L S NL L L N H VG S S
Sbjct: 214 KLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN--GSFSYL 271
Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV---------EFCHLYSL 341
SL L L N++ PR L+ L ++ + + + + + F L L
Sbjct: 272 PSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYL 331
Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQ-LKGGTFFNC--SSLVTLDLSYN 397
+ L++ DNNI + + F L S+ + LSK Q L TF + S L+TL+L+ N
Sbjct: 332 EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKN 391
Query: 398 LLNGSIPDWIDGLSQLSHLILGNNNLEGEV 427
++ L QL L LG N +E ++
Sbjct: 392 HISKIANGTFSWLGQLRILDLGLNEIEQKL 421
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQV-HLSKNMLHGQLKGGTF 383
N L P F L ILD N+IS P L + +V +L N L Q+ TF
Sbjct: 35 NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISDQTF 93
Query: 384 FNCSSLVTLDLSYN 397
C++L LDL N
Sbjct: 94 VFCTNLTELDLMSN 107
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 540 TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579
TLNL+ N+++ + TFS L Q+ LDL N++ K+ Q
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 14/209 (6%)
Query: 148 RQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALD 207
+ L LVN + P + L+ L ++N G+ E+ LP L ++S N L
Sbjct: 331 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 384
Query: 208 ---GSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRN 263
S FG ++L + LDLS N + L G LE L +++LK FS
Sbjct: 385 FKGCCSQSDFGTISL-KYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVF 441
Query: 264 FNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTWLIHIIM 322
+L NL +L + H + SSLE L + NS +P L L + +
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 323 PKNHLEGPIPVEFCHLYSLQILDISDNNI 351
+ LE P F L SLQ+L++S NN
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG------KIPHQL 580
+G+L ++ LN++HN + +P FSNL +E LDLS NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 5/163 (3%)
Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
+ + L L+ N ++ + + L LYLN+N L L L + + N L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 328 EG-PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFN 385
+ PI V F L +L L + N + P F L+ +T + L N L L G F
Sbjct: 98 QALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155
Query: 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
+SL L L N L D L++L L L NN L+ VP
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 209 SIPS-SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI 267
S+PS +F + L++L L++N+L +P + NLE L +++N L+ L+
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
NL L+L+ N P+ + L L L N L LT L + + N L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
+ F L L+ L + +N + F L
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
+ + L L +N LS + LT L + + N L+ F L +L+ L ++DN
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 351 ISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-D 408
+ F L ++ ++ L +N L L F + + L L L YN L S+P + D
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 409 GLSQLSHLILGNNNLEGEVP 428
L+ L L L NN L+ VP
Sbjct: 155 KLTSLKELRLYNNQLK-RVP 173
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG-- 574
LDL NKL LT+++ L L+ N L L F LK +E+L ++ NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 575 -KIPHQLVELKELAV 588
+ QLV L EL +
Sbjct: 102 IGVFDQLVNLAELRL 116
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 514 LSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
L+ L L N+L +PP+V +LT++ L+L +N L L F L ++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 573 NGKIPH----QLVELKELAVFSVAYNNLSGEIPE 602
++P +L ELK L + NN +PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 33/240 (13%)
Query: 342 QILDISDNNISGSLPSCFHPLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
+ L++ +N+I F L ++ LSKN++ +++ G F SL TL+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 401 GSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKL 460
+ LS+L L L NN +E +P P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRV-----------------PSLRRLDL 138
Query: 461 HESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS 520
E + F+ L +++ + N+ I L L L+LS
Sbjct: 139 GELKRLEYISEAAFEGLVNLR------------YLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL 580
N+L P LT ++ L L H + + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 29/193 (15%)
Query: 185 IPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNNQLTGEIPEHLAMGCV 243
+P + + L +L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
NL +L L +LK L+ L L+L GN P S +SL L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL------- 207
Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL- 362
WL+H + F L SL+ L++S NN+ F PL
Sbjct: 208 ------------WLMHAQVATIERNA-----FDDLKSLEELNLSHNNLMSLPHDLFTPLH 250
Query: 363 SITQVHLSKNMLH 375
+ +VHL+ N H
Sbjct: 251 RLERVHLNHNPWH 263
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
P + L R++ L LS N L + P +F L + L L + ++ + +LK L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 590 SVAYNNL 596
++++NNL
Sbjct: 232 NLSHNNL 238
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 534 NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
+L ++ LNLSHNNL L F+ L ++E + L++N
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
L++ ++S N F+ D L RL ++ N+L +P+ N++ L++LDLS+N+L
Sbjct: 234 LQIFNISANIFKY-------DFLTRLY---LNGNSL-TELPAEIKNLSNLRVLDLSHNRL 282
Query: 231 TGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
T +P L C L++ +N + + NL NL++L +EGN + + L++
Sbjct: 283 TS-LPAELG-SCFQLKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTE- 338
Query: 291 SSLEGL--YLNNNSLSGKIP 308
S+ GL YL +N +P
Sbjct: 339 KSVTGLIFYLRDNRPEIPLP 358
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL 551
L+ L L+ N L +P ++ NL+ ++ L+LSHN LT L
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 12/208 (5%)
Query: 148 RQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNAL- 206
+ L LVN + P + L+ L ++N G+ E+ LP L ++S N L
Sbjct: 307 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 360
Query: 207 -DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNF 264
G S L+ LDLS N + L G LE L +++LK FS
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTWLIHIIMP 323
+L NL +L + H + SSLE L + NS +P L L + +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNI 351
+ LE P F L SLQ+L++S NN
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG------KIPHQL 580
+G+L ++ LN++HN + +P FSNL +E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 141/375 (37%), Gaps = 74/375 (19%)
Query: 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 307
L + NN+ +G L +L L+L+ N F+ + + ++LE L L +L G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 308 --PRWLGNLTWLIHIIMPKNHLEGPIPVEF-CHLYSLQILDISDNNISGSLPSC---FHP 361
+ LT L +++ N+++ P F ++ +LD++ N + F
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 362 LSITQVHLSKNMLH-------GQLKGGTFFNCSSLVTLDLSYNLLNGSIP----DWIDGL 410
T + LS L G K G F +S+ TLDLS N S+ D I G
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG- 238
Query: 411 SQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSSP 470
+++ LIL N+ N + N P
Sbjct: 239 TKIQSLILSNSY----------------------------------NMGSSFGHTNFKDP 264
Query: 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLD---LSCNKLIGH 527
D F+ KG + K +K+ + V S + L+ L+ N++
Sbjct: 265 DN-----FTFKGLEASGVKTCD-----LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELA 587
LT + LNLS N L + F NL ++E LDLSYN + + L L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Query: 588 VFSVAYNNLSGEIPE 602
++ N L +P+
Sbjct: 375 ELALDTNQLKS-VPD 388
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 193 LPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
L L+ N+S N L GSI S F N++ L++LDLS N + + + +G NL+ LAL
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 252 NNSLK 256
N LK
Sbjct: 380 TNQLK 384
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 33/240 (13%)
Query: 342 QILDISDNNISGSLPSCFHPLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
+ L++ +N+I F L ++ LSKN++ +++ G F SL TL+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 401 GSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKL 460
+ LS+L L L NN +E +P P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRV-----------------PSLRRLDL 138
Query: 461 HESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS 520
E + F+ L +++ + N+ I L L L+LS
Sbjct: 139 GELKRLEYISEAAFEGLVNLR------------YLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL 580
N+L P LT ++ L L H + + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDL 245
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 185 IPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNNQLTGEIPEHLAMGCV 243
+P + + L +L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
NL +L L +LK L+ L L+L GN P S +SL L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL------- 207
Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP-SCFHPL 362
WL+H + F L SL+ L++S NN+ SLP F PL
Sbjct: 208 ------------WLMHAQVATIERNA-----FDDLKSLEELNLSHNNLM-SLPHDLFTPL 249
Query: 363 -SITQVHLSKNMLH 375
+ +VHL+ N H
Sbjct: 250 HRLERVHLNHNPWH 263
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
P + L R++ L LS N L + P +F L + L L + ++ + +LK L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 590 SVAYNNL 596
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 25/107 (23%)
Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
QIL + DN I+ P F L ++ +++L N L G L G F + + L LDL N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 401 -----------------------GSIPDWIDGLSQLSHLILGNNNLE 424
+P I+ L+ L+HL L N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFV 280
QIL L +NQ+T ++ + +NL+ L L +N L +L L L L N
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 281 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYS 340
+ L+ L++ N L+ ++PR + LT L H+ + +N L+ F L S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 341 L 341
L
Sbjct: 161 L 161
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN--- 573
L L N++ P +L ++ L L N L L F +L Q+ LDL N+L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 574 GKIPHQLVELKEL 586
+ +LV LKEL
Sbjct: 105 SAVFDRLVHLKEL 117
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 204 NALDGSIPSSFGNMNLLQILDLSNN-QLT-----------------------GEIPEHLA 239
NAL G ++F + LL+ LDLS+N QL E+ L
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
G L++L L +N+L+ + +L NL L L GN + SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDN 349
N ++ P +L L+ + + N+L +P E L SLQ L ++DN
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 3/152 (1%)
Query: 274 LEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN-HLEGPIP 332
L GN S C +L L+L++N+L+G LT L + + N L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 333 VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQ-VHLSKNMLHGQLKGGTFFNCSSLVT 391
F L L L + + P F L+ Q ++L N L L TF + +L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTH 156
Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
L L N + GL L L+L N++
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNN 228
L L ++NN +P+ + D L +L + N L S+PS F + L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
QL IP NL+ L+LS N L+ L L+ + L GN F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF--------- 191
Query: 289 KCSSLEGLYLN 299
CS E LYL+
Sbjct: 192 DCSRCETLYLS 202
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
L +L N+ N L F ++ L L L+NNQL +P + L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 253 NSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
N LK +F R L L+ L+L N + K ++L+ L L+ N L
Sbjct: 117 NQLKSLPSGVFDR---LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
+ L+L L L +TF L ++ L+L YN+L +L EL +A N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG------KIPHQL 580
+G+L ++ LN++HN + +P FSNL +E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
L +L ++ N+FQ + +I L L ++S L+ P++F +++ LQ+L++++NQL
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 231 TGEIPE 236
+P+
Sbjct: 507 KS-VPD 511
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG 574
+G+L ++ LN++HN + +P FSNL +E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 531 QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
Q+ NL+ +Q+LNLS+N L F Q+E LDL++ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 345 DISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP 404
D+ D +IS ++ +S+ ++L K+ + TF S L LDL+ L +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELP 294
Query: 405 DWIDGLSQLSHLILGNNNLE 424
+ GLS L L+L N E
Sbjct: 295 SGLVGLSTLKKLVLSANKFE 314
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
L R++ L LS +L+ + F++LK + +DLS+N+L L LK + ++A N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533
Query: 595 NLSGEIP 601
++S +P
Sbjct: 534 HISIILP 540
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG 574
+G+L ++ LN++HN + +P FSNL +E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG 574
+G+L ++ LN++HN + +P FSNL +E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG 574
+G+L ++ LN++HN + +P FSNL +E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 532 VGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNG 574
+G+L ++ LN++HN + +P FSNL +E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
K L+ L+ L+LS N I I G LT +Q LN S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 569 YNKLNG-KIPHQLVELKELAVFSVAYNNLSGEI 600
NK++ + +L L+ L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 13 CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
L+ +TSL+ L+ SSNQ+T PL LT++E L +S+N + L + L+
Sbjct: 146 ALSGLTSLQQLNFSSNQVT---DLKPLANLTTLERLDISSNKVS---DISVLAKLTNLES 199
Query: 73 FYADNNPI 80
A NN I
Sbjct: 200 LIATNNQI 207
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 340 SLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
+ Q+L + DN I+ P F L+ +T++ L N L L G F + L L L+ N
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 399 LNGSIPDWIDGLSQLSHLILGNN 421
L D L L+H+ L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 515 SGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
SG + C+ K + +P G T Q L L N +T L P F L Q+ LDL N+L
Sbjct: 18 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 574 GKIPHQLVELKELAVFSVAYNNL 596
+L +L S+ N L
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 534 NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAY 593
+L++++ L +SHN + L S F +++E LDLS+NKL H V LK L + A+
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 594 NNL 596
+ L
Sbjct: 103 DAL 105
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
LDL NK I IP QV L +Q LN++ N L + F L ++ + L N +
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 577 PH 578
P
Sbjct: 485 PR 486
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL--IPSTFSNLKQIESLDLSYNKLN 573
LD S N L + G+LT ++TL L N L L I + +K ++ LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNN 228
L L ++NN +P+ + D L +L + N L S+PS F + L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
QL IP NL+ L+LS N L+ L L+ + L GN F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF--------- 191
Query: 289 KCSSLEGLYLN 299
CS E LYL+
Sbjct: 192 DCSRCEILYLS 202
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
L +L N+ N L F ++ L L L+NNQL +P + L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 253 NSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
N LK +F R L L+ L+L N + K ++L+ L L+ N L
Sbjct: 117 NQLKSLPSGVFDR---LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
+ L+L L L +TF L ++ L+L YN+L +L EL +A N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN+L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKL 572
+ N L
Sbjct: 156 ANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN+L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKL 572
+ N L
Sbjct: 156 ANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN+L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKL 572
+ N L
Sbjct: 156 ANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 76 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A NNL+ E+P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 165
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G + +L LDLS+NQL +P L L L +S N L L L+ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
+GN P L+ LE L L NN+L+ L L L +++ +N L
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592
G L + L L N LTG+ P+ F I+ L L NK+ + L +L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 593 YNNLSGEIP 601
N +S +P
Sbjct: 111 DNQISCVMP 119
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
PL T++ L+ N L G F LV L+L N L G P+ +G S + L LG
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 421 NNLE 424
N ++
Sbjct: 88 NKIK 91
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G + +L LDLS+NQL +P L L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
+GN P L+ LE L L NN+L+ L L L +++ +N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 515 SGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
SG + C+ K + +P G T Q L L N +T L P F L Q+ LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 574 ---GKIPHQLVELKELAV 588
+ +L +L +L++
Sbjct: 68 VLPAGVFDKLTQLTQLSL 85
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 340 SLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
+ Q+L + DN I+ P F L+ +T++ L N L L G F + L L L+ N
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89
Query: 399 LNGSIPDWIDGLSQLSHLILGNN 421
L D L L+H+ L NN
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 211 PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLR 270
P F + L LDL NNQLT +P + L L+L++N LK NL +L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLT 105
Query: 271 WLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI 318
+ L N + C+ + LYL+ RW+ WL+
Sbjct: 106 HIWLLNNPW---------DCACSDILYLS---------RWISQHPWLV 135
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN--- 573
LDL NK+ NL + TL L +N ++ + P F+ L ++E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 574 GKIPHQLVELK 584
K+P L EL+
Sbjct: 117 EKMPKTLQELR 127
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
L ++ DL K+ +PP L+L +N +T + F NLK + +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
K++ P L +L ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN--- 573
LDL NK+ NL + TL L +N ++ + P F+ L ++E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 574 GKIPHQLVELK 584
K+P L EL+
Sbjct: 117 EKMPKTLQELR 127
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
L ++ DL K+ +PP L+L +N +T + F NLK + +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
K++ P L +L ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 515 SGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
SG + C+ K + +P G T Q L L N +T L P F L Q+ LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 574 ---GKIPHQLVELKELAV 588
+ +L +L +L++
Sbjct: 68 VLPAGVFDKLTQLTQLSL 85
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 340 SLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
+ Q+L + DN I+ P F L+ +T++ L N L L G F + L L L+ N
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89
Query: 399 LNGSIPDWIDGLSQLSHLILGNN 421
L D L L+H+ L NN
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 569 YNKLNG-KIPHQLVELKELAVFSVAYNNLSGEI 600
NK++ + +L L+ L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 13 CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
L+ +TSL+ L SSNQ+T PL LT++E L +S+N + L + L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLDISSNKVS---DISVLAKLTNLES 199
Query: 73 FYADNNPI 80
A NN I
Sbjct: 200 LIATNNQI 207
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 569 YNKLNG-KIPHQLVELKELAVFSVAYNNLSGEI 600
NK++ + +L L+ L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 13 CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
L+ +TSL+ L SSNQ+T PL LT++E L +S+N + L + L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLDISSNKVS---DISVLAKLTNLES 199
Query: 73 FYADNNPI 80
A NN I
Sbjct: 200 LIATNNQI 207
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 14 LANMTSLRILDVSSNQLT------------------GSISS-SPLFYLTSIEELSLSNNH 54
LAN+T+L LD+SSN+++ IS +PL LT+++ELSL+ N
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 55 FHIPISLEPLFNHSRLKI 72
+L L N + L +
Sbjct: 229 LKDIGTLASLTNLTDLDL 246
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
P +IT++ L +N + + G F L +DLS N ++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 421 NNLEGEVP 428
N + E+P
Sbjct: 90 NKIT-ELP 96
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 525 IGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE 582
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
P +IT++ L +N + + G F L +DLS N ++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 421 NNLEGEVP 428
N + E+P
Sbjct: 90 NKIT-ELP 96
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 525 IGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE 582
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 210 IPSSFGN-MNLLQILDLSNNQLTGEIPEHLAMGCV--NLEFLALSNNSLKGHMFSRN--F 264
+P SF + L+ LDLS N + E ++ A +L+ L LS N L+ +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
L NL L + N F +P S C E + N S +G I +
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSSTG------------IRV---- 424
Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF 384
V+ C +L++LD+S+NN+ S F P + ++++S+N L L + F
Sbjct: 425 --------VKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASLF 472
Query: 385 NCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVP 428
L+ + +S N L S+PD I D L+ L + L N + P
Sbjct: 473 PV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 340 SLQILDISDNNIS----GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
+++ LD+S N I+ G L +C + QV + K+ ++G F++ SL LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 396 YNLLNGSIPDWIDGLSQLSHL-ILGN 420
N L+ W LS L +L ++GN
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L +L LDLS N+L +P L + L++S N LT L L +++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
N+L P L +L S+A N+L+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLT-ELP 164
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKL 572
+ N L
Sbjct: 156 ANNDL 160
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 340 SLQILDISDNNIS----GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
+++ LD+S N I+ G L +C + QV + K+ ++G F++ SL LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 396 YNLLNGSIPDWIDGLSQLSHL-ILGN 420
N L+ W LS L +L ++GN
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 210 IPSSFGN-MNLLQILDLSNNQLTGEIPEHLAMGCV--NLEFLALSNNSLKGHMFSRN--F 264
+P SF + L+ LDLS N + E ++ A +L+ L LS N L+ +
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
L NL L + N F +P S C E + N S +G I +
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSSTG------------IRV---- 450
Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF 384
V+ C +L++LD+S+NN+ S F P + ++++S+N L L + F
Sbjct: 451 --------VKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASLF 498
Query: 385 NCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVP 428
L+ + ++ N L S+PD I D L+ L + L N + P
Sbjct: 499 PV--LLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 13 CLANMTSLRILDVSSNQLT-----GSISS--------------SPLFYLTSIEELSLSNN 53
+A + S++ LD++S Q+T +S+ SPL LT+++ LS+ N
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 54 HFHIPISLEPLFNHSRLKIFYADNNPI 80
L PL N S+L AD+N I
Sbjct: 162 QVS---DLTPLANLSKLTTLKADDNKI 185
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
+ LDLS N++ + +Q L L+ N + + +FS+L +E LDLSYN L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 61/141 (43%), Gaps = 32/141 (22%)
Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN 268
SIPS G ++ LDLSNN++T I CVNL+ L L++N + N I
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI---------NTIE 92
Query: 269 LRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTWLIHIIMPKN 325
S S SLE L L+ N LS W L +LT+L + P
Sbjct: 93 ---------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 326 HLEGPIPVEFCHLYSLQILDI 346
L G + F HL LQIL +
Sbjct: 138 TL-GETSL-FSHLTKLQILRV 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
+ LDLS N++ + +Q L L+ N + + +FS+L +E LDLSYN L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN 268
SIPS G ++ LDLSNN++T I CVNL+ L L++N
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN--------------- 60
Query: 269 LRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTWLIHIIMPKN 325
G + + E S S SLE L L+ N LS W L +LT+L + P
Sbjct: 61 -------GINTIEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 326 HLEGPIPVEFCHLYSLQILDI 346
L G + F HL LQIL +
Sbjct: 112 TL-GETSL-FSHLTKLQILRV 130
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
+ F NM L+ L L GE+ ++ G +EF L+N +G +++ + ++ W
Sbjct: 85 TEFENMIKLRTKRL--KLLIGEVDAEVSTG-DKIEFPVLANGKRRGFIYNVGGLVTDIAW 141
Query: 272 LQLEGNHFVGEIPQSLS 288
L +E N +G+ Q L+
Sbjct: 142 LNIEENTDIGKDIQYLA 158
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG 281
+LDLS+N L+ E NL L LS+N L + NLR+L L NH
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC----H 337
S +LE L L NN + ++ L + + +N + PVE
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNK 161
Query: 338 LYSLQILDISDNNI 351
L L +LD+S N +
Sbjct: 162 LPKLMLLDLSSNKL 175
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQ 539
I G +++ +++ +N+ ++ + L LS N + P + L+ ++
Sbjct: 21 IVGSMTPFSNELESMVDYSNRNLTHV-PKDLPPRTKALSLSQNSISELRMPDISFLSELR 79
Query: 540 TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
L LSHN + L F + +E LD+S+N+L
Sbjct: 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 173 LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
++D SN N H+P D+ PR + ++S N++ ++ L++L LS+N++
Sbjct: 35 MVDYSNRNL-THVP---KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 233 EIPEHLAMGCVNLEFLALSNNSLK 256
+ H+ + +LE+L +S+N L+
Sbjct: 91 -LDFHVFLFNQDLEYLDVSHNRLQ 113
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 500 KNIAYIFQGKV--LSLLSGLDLS-CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF 556
K ++YI +G LS L L+L+ CN + IP + L ++ L+LS N+L+ + P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 557 SNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
L ++ L + +++ + L+ L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ----LVELKELAV 588
++T +LS + + L+ S FS+ +E L L+ N++N KI L LKELA+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLKELAL 330
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 511 LSLLSGLDLSCNKLIGHIPPQVGN-LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
L+ L+ L L NKL +P V N LT + LNLS N L L F L Q++ L L+
Sbjct: 51 LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 570 NKLNG---KIPHQLVELKELAVF 589
N+L + +L +LK+L ++
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLY 132
>pdb|1G9N|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|G Chain G, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|P Chain P, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|G Chain G, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|P Chain P, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|G Chain G, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|P Chain P, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|G Chain G, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|P Chain P, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
Length = 313
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
+ + +K + NFN+ ++ + QSL C L L + S +
Sbjct: 2 ARSEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCN------ 55
Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLS 370
T +I PK E PIP+ +C IL +D +G+ P C + ++ H
Sbjct: 56 ----TSVITQACPKVSFE-PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGI 109
Query: 371 KNMLHGQL 378
+ ++ QL
Sbjct: 110 RPVVSTQL 117
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKLN 573
+ N+L
Sbjct: 156 ANNQLT 161
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G + +L LDLS+NQL +P L L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
+GN P L+ LE L L NN L+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKLN 573
+ N+L
Sbjct: 156 ANNQLT 161
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 195 RLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
RL N+ L DG++P +L LDLS+NQL +P L L L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLD 106
Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
+S N L L L+ L L+GN P L+ LE L L NN L+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 310 WLGNLTWLIHIIMPKNHL 327
L L L +++ +N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKLN 573
+ N+L
Sbjct: 156 ANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
G+ L L+ LD+S N+L + L +Q L L N L L P + ++E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 568 SYNKLN 573
+ N+L
Sbjct: 156 ANNQLT 161
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 215 GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274
G + +L LDLS+NQL +P L L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
+GN P L+ LE L L NN L+ L L L +++ +N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
+L L+ L + G++ + +I L+ S L L+LNNN L + +G LT L + + +
Sbjct: 263 DLTKLKXLNV-GSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 325 NHLEGPIPV 333
NH+ P+
Sbjct: 321 NHITDIRPL 329
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 342 QILDISDNNISGSLPSCF-HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
Q L +++N I+ P F H +++ Q++ + N L + G F + L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 401 GSIPDWIDGLSQLSHLILGNNNLEGEV 427
D L L+H+ L NN + E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC 121
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 14 LANMTSLRILDVSSNQLT------------------GSISS-SPLFYLTSIEELSLSNNH 54
LAN+T+L LD+SSN+++ IS +PL LT+++ELSL+ N
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 55 FHIPISLEPLFNHSRLKI 72
+L L N + L +
Sbjct: 232 LKDIGTLASLTNLTDLDL 249
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 14 LANMTSLRILDVSSNQLT------------------GSISS-SPLFYLTSIEELSLSNNH 54
LAN+T+L LD+SSN+++ IS +PL LT+++ELSL+ N
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 55 FHIPISLEPLFNHSRLKI 72
+L L N + L +
Sbjct: 233 LKDIGTLASLTNLTDLDL 250
>pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
Length = 247
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529
P FKI +I G + V K + F++ K A + LSL + +S + I
Sbjct: 46 PASTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLSLRGAIQVSAVPVFQQIA 105
Query: 530 PQVGNL---TRIQTLNLSHNNLTGLIPS-------TFSNLKQIESLD-LSYNKLNGKIPH 578
+VG + ++ + + N++G I S + Q+E L+ L NKL+ +
Sbjct: 106 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLFLNKLSASKEN 165
Query: 579 QLVELKELAVFSVA 592
QL+ +KE V A
Sbjct: 166 QLI-VKEALVTEAA 178
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 14 LANMTSLRILDVSSNQLT------------------GSISS-SPLFYLTSIEELSLSNNH 54
LAN+T+L LD+SSN+++ IS +PL LT+++ELSL+ N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 55 FHIPISLEPLFNHSRLKI 72
+L L N + L +
Sbjct: 228 LKDIGTLASLTNLTDLDL 245
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 14 LANMTSLRILDVSSNQLT------------------GSISS-SPLFYLTSIEELSLSNNH 54
LAN+T+L LD+SSN+++ IS +PL LT+++ELSL+ N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 55 FHIPISLEPLFNHSRLKI 72
+L L N + L +
Sbjct: 228 LKDIGTLASLTNLTDLDL 245
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 541 LNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN-----N 595
L L HNNLT + N + +DLSYN+L + H V+++ L ++ N N
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 596 LSGE-IPEWKA 605
L G+ IP K
Sbjct: 289 LYGQPIPTLKV 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,327,871
Number of Sequences: 62578
Number of extensions: 830788
Number of successful extensions: 2587
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 596
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)