Query 037315
Match_columns 693
No_of_seqs 680 out of 4731
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.1E-71 1.4E-75 629.3 46.4 621 1-634 107-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.2E-65 2.8E-69 577.5 44.3 613 1-625 57-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-61 8.6E-66 544.6 48.0 566 1-626 32-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-57 5.2E-62 523.0 40.8 570 2-648 12-607 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-56 8.5E-61 503.9 47.0 589 1-649 56-671 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1E-54 3.5E-59 484.2 46.5 516 19-626 34-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-54 1.9E-58 478.3 41.4 531 21-626 14-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 5.8E-54 2E-58 478.1 40.7 513 1-602 40-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-52 9.7E-57 464.5 40.3 563 2-647 19-603 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-52 8.3E-57 479.8 40.7 505 1-576 31-563 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.5E-47 5.3E-52 423.5 41.0 492 18-602 28-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-46 4E-51 416.5 37.1 466 96-627 29-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-47 2.6E-51 415.6 35.3 486 17-601 4-514 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 4.9E-45 1.7E-49 409.3 40.9 533 19-643 53-621 (635)
15 4eco_A Uncharacterized protein 100.0 3.1E-47 1.1E-51 422.9 21.4 393 154-625 192-630 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-45 6E-50 404.8 32.9 479 2-577 13-514 (549)
17 4eco_A Uncharacterized protein 100.0 1.4E-46 4.8E-51 417.6 21.4 453 18-577 81-604 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-46 2E-50 405.4 25.2 454 22-601 4-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 1E-44 3.6E-49 408.1 29.8 382 179-625 435-870 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 2.2E-44 7.4E-49 405.5 27.9 481 18-598 323-865 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-44 4.3E-49 394.9 24.6 437 120-626 21-486 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-42 3.1E-46 382.7 41.4 535 1-627 59-612 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-42 5.5E-47 381.2 24.4 459 17-602 30-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 5.6E-41 1.9E-45 359.9 31.1 372 172-602 13-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-41 1.1E-45 370.9 24.4 435 120-626 52-515 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-39 3.8E-44 349.7 30.5 373 196-626 12-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.3E-39 1.8E-43 340.8 22.4 267 11-353 5-271 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-37 4.5E-42 330.1 28.6 404 95-623 11-431 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.1E-37 3.9E-42 335.9 25.3 347 197-625 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 2.1E-37 7.3E-42 333.8 24.5 350 171-603 13-362 (477)
31 1o6v_A Internalin A; bacterial 100.0 4.7E-36 1.6E-40 321.6 32.3 347 143-599 44-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 1.7E-35 5.8E-40 317.3 32.6 347 118-575 44-390 (466)
33 3o6n_A APL1; leucine-rich repe 100.0 1.8E-35 6.1E-40 309.8 27.2 334 218-625 45-378 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-36 2.3E-40 317.4 24.2 361 112-604 34-394 (457)
35 3bz5_A Internalin-J, INLJ; leu 100.0 7.4E-35 2.5E-39 309.3 29.2 69 6-81 30-98 (457)
36 3oja_B Anopheles plasmodium-re 100.0 1.8E-34 6.3E-39 318.6 27.3 334 218-625 51-384 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 1.6E-33 5.6E-38 294.9 29.6 334 168-600 44-377 (390)
38 4fmz_A Internalin; leucine ric 100.0 6.4E-33 2.2E-37 285.8 29.0 304 193-597 43-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-34 2E-38 287.9 19.9 260 291-630 50-313 (313)
40 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.2E-37 283.0 30.7 305 167-573 42-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.7E-32 1.3E-36 300.2 30.2 311 168-575 50-360 (597)
42 1xku_A Decorin; proteoglycan, 100.0 4.8E-31 1.7E-35 269.4 28.7 291 219-595 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-31 8.3E-36 271.8 25.6 290 219-595 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 9.7E-31 3.3E-35 267.3 27.7 253 170-457 34-286 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-34 3.8E-39 311.5 -2.6 280 169-448 3-326 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-34 5E-39 310.6 -2.6 387 120-574 3-441 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 8.5E-32 2.9E-36 272.0 16.6 252 267-598 50-305 (313)
48 1xku_A Decorin; proteoglycan, 100.0 4.5E-30 1.5E-34 262.3 29.4 253 169-457 31-285 (330)
49 3zyj_A Leucine-rich repeat-con 100.0 5.6E-29 1.9E-33 264.5 25.3 252 268-601 44-296 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 8.5E-29 2.9E-33 264.1 24.8 252 268-601 55-307 (452)
51 2z66_A Variable lymphocyte rec 100.0 7.9E-29 2.7E-33 250.2 19.9 250 271-601 11-265 (306)
52 2z66_A Variable lymphocyte rec 100.0 8.9E-29 3.1E-33 249.8 20.3 254 294-626 10-266 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 4E-29 1.4E-33 257.7 15.7 208 217-452 30-239 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 8E-29 2.7E-33 255.4 15.6 280 242-601 30-318 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 2.2E-27 7.6E-32 253.1 26.4 248 245-574 56-304 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 2.3E-27 7.9E-32 252.1 26.4 247 245-573 45-292 (440)
57 3ogk_B Coronatine-insensitive 100.0 1.2E-30 4E-35 289.5 -0.9 202 143-347 110-326 (592)
58 3ogk_B Coronatine-insensitive 100.0 3.1E-30 1.1E-34 286.1 0.5 412 137-599 65-528 (592)
59 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-27 5.7E-32 237.7 20.0 89 513-601 154-242 (285)
60 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-27 6.3E-32 237.4 19.4 211 362-626 32-243 (285)
61 4fcg_A Uncharacterized protein 99.9 2.1E-26 7.1E-31 233.8 20.9 170 267-456 81-250 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-28 5.7E-33 248.6 5.3 152 386-594 119-272 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1E-28 3.5E-33 250.2 3.3 246 288-623 31-277 (317)
64 3oja_A Leucine-rich immune mol 99.9 1.7E-27 5.7E-32 255.1 9.0 109 513-625 170-286 (487)
65 2p1m_B Transport inhibitor res 99.9 7.8E-29 2.7E-33 275.1 -2.6 407 116-597 62-519 (594)
66 4fcg_A Uncharacterized protein 99.9 1.4E-25 4.9E-30 227.6 21.3 234 169-448 81-314 (328)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 241.1 26.0 94 195-304 41-134 (622)
68 3oja_A Leucine-rich immune mol 99.9 8.8E-27 3E-31 249.6 11.1 244 268-602 35-287 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.3E-29 236.5 27.3 114 170-304 41-154 (622)
70 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5.1E-32 241.0 3.1 247 265-598 41-310 (312)
71 2o6q_A Variable lymphocyte rec 99.9 1.5E-24 5.2E-29 214.1 22.3 206 340-601 17-222 (270)
72 1wwl_A Monocyte differentiatio 99.9 7.4E-27 2.5E-31 235.9 5.1 249 143-449 41-310 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.8E-29 216.1 20.5 110 339-449 28-138 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.7E-24 5.8E-29 214.8 21.1 229 272-602 12-242 (276)
75 1p9a_G Platelet glycoprotein I 99.9 3.8E-24 1.3E-28 212.9 21.2 205 335-599 6-210 (290)
76 2p1m_B Transport inhibitor res 99.9 9.3E-28 3.2E-32 266.4 -6.5 419 136-620 57-518 (594)
77 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.9E-28 207.9 23.5 206 363-625 17-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.5E-29 212.4 13.1 225 293-607 21-245 (272)
79 1p9a_G Platelet glycoprotein I 99.9 8.3E-23 2.8E-27 203.2 21.4 203 287-573 6-208 (290)
80 3m19_A Variable lymphocyte rec 99.9 1.2E-22 4.1E-27 198.1 18.2 162 387-601 35-196 (251)
81 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 197.6 18.9 202 342-602 22-223 (272)
82 3m19_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 194.0 18.9 183 387-625 14-197 (251)
83 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.4E-28 216.3 5.6 87 513-599 197-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 7E-22 2.4E-26 191.3 15.3 78 513-594 156-236 (239)
85 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 219.5 2.2 243 286-601 27-320 (386)
86 3goz_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 215.6 3.0 67 513-579 226-303 (362)
87 2ast_B S-phase kinase-associat 99.9 7.6E-23 2.6E-27 209.4 5.8 90 511-604 221-313 (336)
88 2ast_B S-phase kinase-associat 99.9 7.5E-23 2.5E-27 209.5 5.6 199 219-445 48-257 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4.2E-26 189.5 13.7 197 363-619 32-237 (239)
90 4glp_A Monocyte differentiatio 99.9 1.6E-21 5.4E-26 196.7 14.2 56 513-573 252-307 (310)
91 2v9t_B SLIT homolog 2 protein 99.9 1.9E-21 6.6E-26 184.9 13.5 196 390-649 14-209 (220)
92 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 192.6 16.0 195 311-598 37-231 (308)
93 4glp_A Monocyte differentiatio 99.9 3.3E-21 1.1E-25 194.4 14.6 227 120-352 64-307 (310)
94 1h6u_A Internalin H; cell adhe 99.8 9.6E-21 3.3E-25 190.3 17.0 192 290-574 40-231 (308)
95 2ca6_A RAN GTPase-activating p 99.8 7.8E-23 2.7E-27 213.4 1.2 239 193-451 31-319 (386)
96 4ay9_X Follicle-stimulating ho 99.8 5.9E-20 2E-24 188.4 19.6 243 172-446 12-257 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-20 4.8E-25 179.0 13.1 157 389-601 13-170 (220)
98 4ay9_X Follicle-stimulating ho 99.8 4.8E-20 1.7E-24 189.0 17.6 223 292-596 31-258 (350)
99 2xot_A Amphoterin-induced prot 99.8 2E-20 6.8E-25 192.7 12.9 178 365-599 21-204 (361)
100 2o6s_A Variable lymphocyte rec 99.8 6.2E-20 2.1E-24 173.4 15.1 162 386-607 27-188 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7E-24 170.9 15.7 114 513-626 57-170 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-19 7.8E-24 170.6 15.6 116 511-626 56-171 (220)
103 3e6j_A Variable lymphocyte rec 99.8 8.7E-19 3E-23 167.8 16.5 157 388-601 20-176 (229)
104 3cvr_A Invasion plasmid antige 99.8 3.5E-19 1.2E-23 191.8 15.2 187 340-607 60-253 (571)
105 2xot_A Amphoterin-induced prot 99.8 4E-19 1.4E-23 182.9 14.2 112 513-624 89-205 (361)
106 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 164.4 15.7 37 195-231 29-65 (208)
107 3e6j_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 165.5 16.1 153 364-574 21-173 (229)
108 1h6t_A Internalin B; cell adhe 99.8 3.4E-18 1.2E-22 170.1 15.6 174 335-599 42-215 (291)
109 1h6t_A Internalin B; cell adhe 99.7 4.7E-18 1.6E-22 169.0 13.0 190 293-575 26-215 (291)
110 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.7E-22 154.6 15.1 136 513-648 30-182 (192)
111 1m9s_A Internalin B; cell inva 99.7 4.5E-18 1.5E-22 185.4 13.7 63 383-449 83-145 (605)
112 4ezg_A Putative uncharacterize 99.7 9.7E-18 3.3E-22 156.6 13.7 154 384-598 41-195 (197)
113 2wfh_A SLIT homolog 2 protein 99.7 7E-18 2.4E-22 156.5 11.5 134 512-646 31-180 (193)
114 3cvr_A Invasion plasmid antige 99.7 6.3E-17 2.2E-21 174.2 18.5 179 146-354 60-245 (571)
115 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.3E-22 163.2 11.5 168 364-600 21-188 (263)
116 3sb4_A Hypothetical leucine ri 99.7 1.3E-17 4.5E-22 169.4 12.1 76 513-590 251-327 (329)
117 1m9s_A Internalin B; cell inva 99.7 3E-17 1E-21 178.9 15.6 168 245-450 23-190 (605)
118 1w8a_A SLIT protein; signaling 99.7 1.7E-17 6E-22 153.9 11.0 89 513-601 55-143 (192)
119 4ezg_A Putative uncharacterize 99.7 5.8E-17 2E-21 151.3 12.0 154 336-574 41-195 (197)
120 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.5E-20 157.7 22.8 266 242-597 112-383 (401)
121 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.4E-24 196.5 -8.6 76 513-590 487-566 (567)
122 4fs7_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 159.1 21.4 323 193-588 70-392 (394)
123 3sb4_A Hypothetical leucine ri 99.7 6.7E-17 2.3E-21 164.2 11.6 287 144-441 24-327 (329)
124 4fdw_A Leucine rich hypothetic 99.7 3.6E-15 1.2E-19 154.4 23.0 242 244-573 136-383 (401)
125 1xeu_A Internalin C; cellular 99.7 1.5E-16 5.1E-21 155.5 10.0 171 242-451 18-188 (263)
126 2ell_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 140.8 11.0 88 511-598 70-161 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 140.6 13.5 91 511-601 53-143 (193)
128 4fs7_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 149.5 23.2 318 205-594 58-376 (394)
129 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 140.7 9.5 138 385-578 22-164 (168)
130 2o6r_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 137.9 13.5 91 511-601 51-141 (177)
131 2je0_A Acidic leucine-rich nuc 99.6 8.7E-16 3E-20 136.2 10.5 83 511-593 63-149 (149)
132 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.1E-20 137.4 13.0 115 511-625 27-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.6 9.1E-16 3.1E-20 136.1 7.8 130 385-569 15-149 (149)
134 1dce_A Protein (RAB geranylger 99.6 1.9E-17 6.6E-22 179.4 -3.8 182 166-355 346-549 (567)
135 4b8c_D Glucose-repressible alc 99.6 6.4E-16 2.2E-20 173.0 6.1 163 267-454 173-335 (727)
136 4b8c_D Glucose-repressible alc 99.6 4.5E-16 1.5E-20 174.2 3.4 214 315-598 173-405 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5E-19 132.2 9.4 87 511-598 63-154 (176)
138 4gt6_A Cell surface protein; l 99.5 1.8E-12 6.3E-17 134.9 25.9 322 196-596 66-390 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.8E-19 131.3 9.0 135 382-573 14-153 (176)
140 3g39_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 128.4 10.7 109 514-625 11-119 (170)
141 3g39_A Variable lymphocyte rec 99.5 8.9E-14 3E-18 125.8 11.6 91 512-602 30-120 (170)
142 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 125.8 10.7 108 515-625 15-122 (174)
143 1ds9_A Outer arm dynein; leuci 99.5 3.6E-16 1.2E-20 146.0 -5.9 156 383-598 14-186 (198)
144 4gt6_A Cell surface protein; l 99.5 1.2E-11 4E-16 128.8 26.5 136 378-573 256-391 (394)
145 2r9u_A Variable lymphocyte rec 99.5 2.9E-13 1E-17 122.8 11.7 90 512-601 33-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.3E-20 140.7 -8.1 138 407-602 14-158 (198)
147 2ifg_A High affinity nerve gro 99.3 1.4E-12 4.8E-17 133.4 9.6 115 511-626 30-146 (347)
148 2ifg_A High affinity nerve gro 99.3 3.3E-12 1.1E-16 130.7 10.1 109 515-626 11-121 (347)
149 4h09_A Hypothetical leucine ri 99.3 6.9E-10 2.4E-14 114.8 26.8 145 382-584 212-356 (379)
150 4h09_A Hypothetical leucine ri 99.3 3.7E-10 1.3E-14 116.9 23.9 298 193-593 45-342 (379)
151 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 138.3 -4.2 161 144-304 71-252 (372)
152 3un9_A NLR family member X1; l 99.2 7.7E-13 2.6E-17 135.6 -3.0 135 218-352 101-252 (372)
153 2ra8_A Uncharacterized protein 98.8 2.3E-09 8E-14 108.6 3.1 163 382-595 167-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.7E-08 5.8E-13 102.3 9.1 138 116-257 135-293 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 9.6E-08 3.3E-12 87.2 1.1 42 407-448 32-78 (185)
156 3rw6_A Nuclear RNA export fact 98.3 5.8E-07 2E-11 86.0 5.9 62 511-574 169-234 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 3.1E-07 1.1E-11 83.7 3.6 115 142-256 33-164 (185)
158 3rw6_A Nuclear RNA export fact 98.2 4.2E-07 1.4E-11 87.0 2.9 84 517-602 148-238 (267)
159 3e4g_A ATP synthase subunit S, 98.1 4.4E-07 1.5E-11 80.3 0.2 83 513-595 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.3E-11 75.9 2.5 84 195-278 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.9 1.1E-05 3.9E-10 68.1 5.3 98 539-646 11-111 (130)
162 3rfe_A Platelet glycoprotein I 97.2 0.0007 2.4E-08 57.0 6.9 57 515-573 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00025 8.5E-09 63.9 2.4 89 13-102 36-133 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00041 1.4E-08 62.5 3.7 63 166-228 67-136 (197)
165 2lz0_A Uncharacterized protein 72.5 4.3 0.00015 31.6 4.4 46 5-52 7-52 (100)
166 2lz0_A Uncharacterized protein 64.3 15 0.00052 28.4 6.0 45 524-569 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-71 Score=629.25 Aligned_cols=621 Identities=30% Similarity=0.444 Sum_probs=500.1
Q ss_pred CCCCCCccCcch--hccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCccc---ccCCCCCcEEEc
Q 037315 1 MADNELRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP---LFNHSRLKIFYA 75 (693)
Q Consensus 1 Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~~l~~L~~L~l 75 (693)
|++|.++|.+|. .|+++++|++|||++|.+++.+|...+.++++|++|++++|++++..+ .. +.++++|++|++
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAI 185 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEEC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEEC
Confidence 455666665555 666666666666666666555554223556666666666666654433 22 556666666666
Q ss_pred cCCccccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCC
Q 037315 76 DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVND 155 (693)
Q Consensus 76 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 155 (693)
++|.+.+..+. ....+|++|++ +.+.+.+.+|. ++.+++|++|++++|.+.+.+|..+ +++++|++|++++|
T Consensus 186 s~n~l~~~~~~-----~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 186 SGNKISGDVDV-----SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSN 257 (768)
T ss_dssp CSSEEESCCBC-----TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSS
T ss_pred CCCcccccCCc-----ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCC
Confidence 66666543322 23448999999 77888877776 8899999999999999988877775 88999999999999
Q ss_pred cccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccc
Q 037315 156 SLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIP 235 (693)
Q Consensus 156 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 235 (693)
.+.+..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+.+.+|
T Consensus 258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 998766554 889999999999999989999888767999999999999999999999999999999999999998999
Q ss_pred hHHhhCCCCCcEEEccccccccccCccCCCCC-CCCeEeccCccccccCCcCCcC--CCCCCEEeccCCcccccCCcccc
Q 037315 236 EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-NLRWLQLEGNHFVGEIPQSLSK--CSSLEGLYLNNNSLSGKIPRWLG 312 (693)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~l~ 312 (693)
...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+++..|..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 88677899999999999999988888888887 9999999999999888887776 88999999999999999999999
Q ss_pred CCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcccccCCCCCcE
Q 037315 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391 (693)
Q Consensus 313 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 391 (693)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .++|+.|++++|++.+.+|. .+..+++|++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~ 494 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNW 494 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCE
Confidence 999999999999999999999999999999999999999988887665 78999999999999888887 8899999999
Q ss_pred EeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCC--
Q 037315 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSS-- 469 (693)
Q Consensus 392 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~-- 469 (693)
|++++|.+++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+....-.........
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999998887655321111000000
Q ss_pred --------Cchhhh---HhhhhcccCCccccccc--ceeeeecccceee--eccccccCcceEECCCCcccccCchhhcc
Q 037315 470 --------PDEQFK---ILFSIKGHQGHVEKKIQ--EFFEFTTKNIAYI--FQGKVLSLLSGLDLSCNKLIGHIPPQVGN 534 (693)
Q Consensus 470 --------~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 534 (693)
...... ....+.+.......... ............. .....+++|+.||+++|++++.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 000000 00000000000000000 0000000000000 01123678999999999999999999999
Q ss_pred CCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCccc
Q 037315 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614 (693)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~ 614 (693)
+++|+.|+|++|++++.+|..++++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+. .++.++...+
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~ 733 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAK 733 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 7899999999
Q ss_pred ccCccCCCCCCCCCCCCCCC
Q 037315 615 YEGNTFLCGLPLPICRSPTT 634 (693)
Q Consensus 615 ~~~n~~~c~~~~~~c~~~~~ 634 (693)
+.|||.+|+.|+..|.....
T Consensus 734 ~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 734 FLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp GCSCTEEESTTSCCCCSCC-
T ss_pred hcCCchhcCCCCcCCCCCcc
Confidence 99999999999888875443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.2e-65 Score=577.46 Aligned_cols=613 Identities=27% Similarity=0.364 Sum_probs=382.0
Q ss_pred CCCCCCccC---cchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCc-ccccCCCCCcEEEcc
Q 037315 1 MADNELRGS---LPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISL-EPLFNHSRLKIFYAD 76 (693)
Q Consensus 1 Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~ 76 (693)
|+++.++|. +|++|.++++|+.++++.+.+. .+|. .++.+++|++|||++|.+.+.+|. ..+.++++|++|+++
T Consensus 57 L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp CTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred CCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence 345566665 5555555555555555555554 4444 455555555555555555544441 145555555555555
Q ss_pred CCccccccccccCCCCCCccccEEecCCCCCCCCcCchh---hc----------------------CCCCCCEEEccCcc
Q 037315 77 NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF---LY----------------------YQHDLEDVHFSRIQ 131 (693)
Q Consensus 77 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---l~----------------------~~~~L~~L~l~~~~ 131 (693)
+|.+.+..+..+. ....+|++|++ +.+.+.+..+.. +. .+++|++|++++|.
T Consensus 135 ~n~l~~~~~~~~~--~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 135 SNTLDFPGKVSGG--LKLNSLEVLDL-SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211 (768)
T ss_dssp SSEEECCSSCCSC--CCCTTCSEEEC-CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC
T ss_pred CCccCCcCCHHHh--ccCCCCCEEEC-CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc
Confidence 5555443333211 11224555555 444444433333 33 44555555555555
Q ss_pred ccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCC
Q 037315 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIP 211 (693)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 211 (693)
+.+..|. ++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|
T Consensus 212 l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 212 FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCC
T ss_pred CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccC
Confidence 5544443 245555555555555555544455555555555555555555444443 24555566666665555555
Q ss_pred ccCCCC-CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCcc-CCCCCCCCeEeccCccccccCCcCCcC
Q 037315 212 SSFGNM-NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSR-NFNLINLRWLQLEGNHFVGEIPQSLSK 289 (693)
Q Consensus 212 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~ 289 (693)
..+... ++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..|..+..
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred HHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 555543 6666666666666555554443 4666666666666665444433 556666666666666666556665655
Q ss_pred CC-CCCEEeccCCcccccCCccccC--CCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCccc
Q 037315 290 CS-SLEGLYLNNNSLSGKIPRWLGN--LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSIT 365 (693)
Q Consensus 290 l~-~L~~L~L~~n~i~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~ 365 (693)
++ +|++|++++|.+++..+..+.. +++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+. .++|+
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 445 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence 55 6666666666666555555554 56677777777777766777777777777777777777766666554 66777
Q ss_pred EEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 037315 366 QVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445 (693)
Q Consensus 366 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 445 (693)
.|++++|.+.+.++. .+..+++|++|++++|.+++..|.++.++++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 446 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp EEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCcccCcCCH-HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 777777777766665 6677777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCcccCCCCcccCc-cccccCCCCCCchhhhHhhh-hcccCCcccccccceeeeeccccee---------ee------cc
Q 037315 446 NLHGLIPPCFDNTK-LHESYNNSSSPDEQFKILFS-IKGHQGHVEKKIQEFFEFTTKNIAY---------IF------QG 508 (693)
Q Consensus 446 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------~~ 508 (693)
++++.+|..+..++ +.......+...+..+.... ......................... .+ ..
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 77777777766544 22222222222211111110 0000000000000111111100000 00 00
Q ss_pred ccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCE
Q 037315 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAV 588 (693)
Q Consensus 509 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 588 (693)
..++.++.++++.|.+.+.+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+..+++|++
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 12344566777888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315 589 FSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 589 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
||+++|+++|.+|..+..++.+..+++++|+.....|
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999999999999999999999998765433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-61 Score=544.65 Aligned_cols=566 Identities=21% Similarity=0.231 Sum_probs=450.5
Q ss_pred CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI 80 (693)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (693)
|++|+|++..+.+|+++++|++|||++|.++ .+++..++++++|++|++++|+++ .+|...+.++++|++|++++|.+
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence 4677777777777777888888888887777 443336777778888888877776 34545677777888888887777
Q ss_pred ccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhh-hhcCCCCCEEEccCCcccc
Q 037315 81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWL-LENNTKLRQLSLVNDSLAG 159 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 159 (693)
.+..+..+. ...+|++|++ +.+.+.+..+..+..+++|++|++++|.+.+..+..+ ...+++|++|++++|.+++
T Consensus 110 ~~~~~~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 110 QKIKNNPFV---KQKNLITLDL-SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp CCCCSCTTT---TCTTCCEEEC-CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CccChhHcc---ccCCCCEEEC-CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 654433322 2347778887 6666666666667777778888887777766554433 1245777888888777777
Q ss_pred cCCCCCCCCCCCCEEEccCCcCcccCChhhhh--cCCCCcEEEccCCcccccCCccCCCCCC--CCEEEcccCccccccc
Q 037315 160 PFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD--ILPRLISFNISMNALDGSIPSSFGNMNL--LQILDLSNNQLTGEIP 235 (693)
Q Consensus 160 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~ 235 (693)
..+..+..+++|+.|+++++.+.+.....+.. ..++|++|++++|.+.+..|..|..++. |++|++++|.+. .++
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~ 264 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVG 264 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EEC
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccC
Confidence 66666777777777777777665322222211 1368999999999999888888888765 999999999998 444
Q ss_pred hHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccc-----cCC----cCCcCCCCCCEEeccCCccccc
Q 037315 236 EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG-----EIP----QSLSKCSSLEGLYLNNNSLSGK 306 (693)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~L~~n~i~~~ 306 (693)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ .+| ..+..+++|++|++++|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 4445579999999999999999888899999999999999875442 122 2678899999999999999988
Q ss_pred CCccccCCCCCcEEEccCCccccC--ccccccC--CCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcc
Q 037315 307 IPRWLGNLTWLIHIIMPKNHLEGP--IPVEFCH--LYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGG 381 (693)
Q Consensus 307 ~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~ 381 (693)
.+..+.++++|++|++++|.+... ....|.. .++|+.|++++|++.+..+..+. .++|+.|++++|.+.+.++..
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 888899999999999999875422 2223333 35899999999999988777665 788999999999998888877
Q ss_pred cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEEccCCcCcccCCCCcccCc
Q 037315 382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE--GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459 (693)
Q Consensus 382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 459 (693)
.+.++++|++|++++|.+.+..+..|..+++|++|++++|.+. +..|..+.++++|++|++++|+++++.+..|..
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-- 502 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-- 502 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--
Confidence 8999999999999999998888889999999999999999986 467888999999999999999999888877766
Q ss_pred cccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc--------hh
Q 037315 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP--------PQ 531 (693)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~ 531 (693)
+++|++|++++|++++..+ ..
T Consensus 503 ---------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 503 ---------------------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred ---------------------------------------------------ccccCEEeCCCCCccccchhhccCCcchh
Confidence 5589999999999986532 23
Q ss_pred hccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcc-ccCcC
Q 037315 532 VGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKA-QFATF 610 (693)
Q Consensus 532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~l 610 (693)
|.++++|++|+|++|+++.+++..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .++++
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 78899999999999999988778899999999999999999988888889999999999999999988877666 78899
Q ss_pred CcccccCccCCCCCCC
Q 037315 611 NENSYEGNTFLCGLPL 626 (693)
Q Consensus 611 ~~~~~~~n~~~c~~~~ 626 (693)
..+++++|||.|+|+.
T Consensus 612 ~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 612 TELDMRFNPFDCTCES 627 (680)
T ss_dssp SEEECTTCCCCBCCCC
T ss_pred CEEEccCCCcccCCcc
Confidence 9999999999999985
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-57 Score=523.03 Aligned_cols=570 Identities=21% Similarity=0.184 Sum_probs=343.2
Q ss_pred CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315 2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN 81 (693)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (693)
++++++.+ |. -.++|++|||++|.|+ .++...|..+++|++|+|++|...+.++..++.++++|++|++++|.+.
T Consensus 12 s~~~L~~v-P~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 12 RFCNLTQV-PQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCSSCC-CS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred cCCCCCCC-CC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 45677765 43 4588999999999998 5544489999999999999997766776578999999999999999987
Q ss_pred cccccccCCCCCCccccEEecCCCCCCCCcCchh--hcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc
Q 037315 82 AKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF--LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG 159 (693)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 159 (693)
+..+..+. ...+|++|+| +.+.+.+..+.. +..+++|++|++++|.+.+..+...++++++|++|++++|.+++
T Consensus 87 ~~~p~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 87 FLHPDAFQ---GLFHLFELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp EECTTSSC---SCSSCCCEEC-TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ccCHhHcc---CCcccCEeeC-cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 76555433 2337777777 666666654443 66777777777777777665543334677777777777777776
Q ss_pred cCCCCCCCC--CCCCEEEccCCcCcccCChhhhhcCC------CCcEEEccCCcccccCCccCCCC---CCCCEEEcccC
Q 037315 160 PFRLPIHSH--RHLRLLDVSNNNFQGHIPVEIGDILP------RLISFNISMNALDGSIPSSFGNM---NLLQILDLSNN 228 (693)
Q Consensus 160 ~~~~~l~~~--~~L~~L~l~~n~~~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n 228 (693)
..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|++|++++|.+.+..+..+... .+++.+.++.+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 666666555 67777777777776655554333 22 37777777777665555554432 45666666532
Q ss_pred cccc--------ccchHHhhC--CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315 229 QLTG--------EIPEHLAMG--CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298 (693)
Q Consensus 229 ~l~~--------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 298 (693)
.... ......+.+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 2110 111222222 256777777777777766666777777777777777777666666777777777777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL 378 (693)
Q Consensus 299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 378 (693)
++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+... .++|+.+++++|++. .+
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l 396 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TL 396 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-cc
Confidence 7777766666677777777777777777766666667777777777777776653211 455666666666654 22
Q ss_pred CcccccCCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315 379 KGGTFFNCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPV-QLCGLNQLQLLDLSNNNLHGLIPPCFD 456 (693)
Q Consensus 379 ~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~ 456 (693)
+. ...+++.|++++|.+.+... ..+.++++|++|++++|++++..+. .+..+++|+.|++++|.+....+....
T Consensus 397 ~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 397 PK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 22 13456666666666654321 2234566666666666666543322 234455666666666655432221110
Q ss_pred cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536 (693)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 536 (693)
... + ..+++|++|+|++|++++..|..|..++
T Consensus 473 ~~~----------------------------------------------~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 473 WDV----------------------------------------------F--EGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp SSC----------------------------------------------S--SCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred hhh----------------------------------------------h--cCcccccEEECCCCcccccChhHccchh
Confidence 000 0 0133555555555555555555555555
Q ss_pred CCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCccccc
Q 037315 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYE 616 (693)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~ 616 (693)
+|++|+|++|+++++++..+. ++|+.|+|++|++++..|..+ ++|+.+++++|++.|.++.. .+..+...
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~-----~f~~~~~~ 574 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS-----TFINWLNH 574 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC-----SHHHHHHH
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH-----HHHHHHHh
Confidence 555555555555555444443 455555555555555555443 24555555555555544321 11111112
Q ss_pred CccCCCCCCCC-CCCCCCCCCccccccccCCCC
Q 037315 617 GNTFLCGLPLP-ICRSPTTMSEASIENERDDNL 648 (693)
Q Consensus 617 ~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~ 648 (693)
.+...|+.+.. .|..|....+..+.+.....|
T Consensus 575 ~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp TTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred cCcccccccccCccCCchhhCCCccccCccccC
Confidence 23333333222 688887777666655544433
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-56 Score=503.87 Aligned_cols=589 Identities=22% Similarity=0.211 Sum_probs=461.2
Q ss_pred CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI 80 (693)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (693)
|++|.+++..|++|+++++|++|+|++|.++ .+|...|+.+++|++|++++|++.+ ++...+.++++|++|++++|.+
T Consensus 56 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcc
Confidence 5789999999999999999999999999998 8887679999999999999999974 4446899999999999999999
Q ss_pred ccccccccCCCCCCccccEEecCCCCCCCCcCchhhc--CCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccc
Q 037315 81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLY--YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLA 158 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 158 (693)
.+..+..+ ....+|++|++ +.+.+.+..+..+. .+++|++|++++|.+.+..+..+ +.+++|+.|++.++.+.
T Consensus 134 ~~~~~~~~---~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 134 SSTKLGTQ---VQLENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp SCCCCCSS---SCCTTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCH
T ss_pred cccCchhh---cccccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccC
Confidence 87655543 23459999999 77777776666554 56899999999999987766654 88999999999998876
Q ss_pred ccCCCCC---CCCCCCCEEEccCCcCcccCChhhhhcC--CCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccc
Q 037315 159 GPFRLPI---HSHRHLRLLDVSNNNFQGHIPVEIGDIL--PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE 233 (693)
Q Consensus 159 ~~~~~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 233 (693)
......+ ...++|++|++++|.+++..|..+.. + ++|++|++++|.+++..+..|+.+++|++|++++|.+.+.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 4322111 13478999999999998777766654 4 4599999999999988889999999999999999999854
Q ss_pred cchHHhhCCCCCcEEEcccccccc---------ccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315 234 IPEHLAMGCVNLEFLALSNNSLKG---------HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304 (693)
Q Consensus 234 ~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 304 (693)
.|. .+.++++|++|++++|...+ +....+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 288 ~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 288 FSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp CTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred Chh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 444 44579999999999875442 22336788999999999999999888888999999999999999754
Q ss_pred c--cCCccccCC--CCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCC-CCC-CCCcccEEEccCccccccc
Q 037315 305 G--KIPRWLGNL--TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP-SCF-HPLSITQVHLSKNMLHGQL 378 (693)
Q Consensus 305 ~--~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~ 378 (693)
. .....+..+ ++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+.++ ..+ ..++|++|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 2 222334333 589999999999998889999999999999999999987665 333 4789999999999986555
Q ss_pred CcccccCCCCCcEEeCcCcccC--CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315 379 KGGTFFNCSSLVTLDLSYNLLN--GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD 456 (693)
Q Consensus 379 ~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 456 (693)
+. .|..+++|+.|++++|.+. +..|..+.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.
T Consensus 447 ~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TT-TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred hh-hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence 54 8899999999999999886 46788999999999999999999988888899999999999999999876544332
Q ss_pred cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536 (693)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 536 (693)
.... .....+++|++|++++|+++.+.+..|.+++
T Consensus 526 ~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 526 GGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 1100 0001267899999999999976667799999
Q ss_pred CCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccc-cCCCCCEEecCCCcCcccCC--CCccccCcCCcc
Q 037315 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV-ELKELAVFSVAYNNLSGEIP--EWKAQFATFNEN 613 (693)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~l~~~ 613 (693)
+|++|++++|+++++++..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++ .|+..|..-...
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~ 640 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC--
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCc
Confidence 999999999999999889999999999999999999988888787 78999999999999999887 455444322211
Q ss_pred cccCccCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 037315 614 SYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLI 649 (693)
Q Consensus 614 ~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~ 649 (693)
.+.+. .....|..|....+..+.++..+.+.
T Consensus 641 ~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~~ 671 (680)
T 1ziw_A 641 NIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSCK 671 (680)
T ss_dssp ------------------------------------
T ss_pred ccccc-----cCCcEECCchHHCCCcccccChhhcC
Confidence 11110 01125777777777666666665543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-54 Score=484.17 Aligned_cols=516 Identities=22% Similarity=0.228 Sum_probs=354.6
Q ss_pred CCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcccc
Q 037315 19 SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLA 98 (693)
Q Consensus 19 ~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 98 (693)
++++|||++|.++ .+++..|+++++|++|++++|++.+..| .+|.++++|++|++++|.+
T Consensus 34 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l------------------ 93 (606)
T 3t6q_A 34 STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPL------------------ 93 (606)
T ss_dssp TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC------------------
T ss_pred cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcc------------------
Confidence 4555555555555 3332245555555555555555543323 3455555555555555544
Q ss_pred EEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccC
Q 037315 99 SLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN 178 (693)
Q Consensus 99 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 178 (693)
.+..|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.+++.....+..+++|++|++++
T Consensus 94 ----------~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 94 ----------IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp ----------SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred ----------cccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 3344555666777778888777776543333 36778888888888887764434444578888888888
Q ss_pred CcCcccCChhhhhcCCCCc--EEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccc
Q 037315 179 NNFQGHIPVEIGDILPRLI--SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256 (693)
Q Consensus 179 n~~~~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (693)
|.+++..+..+.. +++|+ +|++++|.+.+..|..+.. ..|+.|++++|. .++..+ .++.+++...+....+.
T Consensus 163 n~l~~~~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 163 NAIHYLSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp SCCCEECHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCT
T ss_pred CcccccChhhhhh-hcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhc
Confidence 8887444444444 77777 7888888887766665544 578888888775 222222 23444433333222211
Q ss_pred -----cccCccCCCCC--CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcccc
Q 037315 257 -----GHMFSRNFNLI--NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG 329 (693)
Q Consensus 257 -----~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 329 (693)
...+..+..+. +|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence 11122222222 5777777777777666666777777777777777776 566667777777777777777776
Q ss_pred CccccccCCCCCCEEECcCCcCCCCCCCC-C-CCCcccEEEccCcccccccC-cccccCCCCCcEEeCcCcccCCCcchh
Q 037315 330 PIPVEFCHLYSLQILDISDNNISGSLPSC-F-HPLSITQVHLSKNMLHGQLK-GGTFFNCSSLVTLDLSYNLLNGSIPDW 406 (693)
Q Consensus 330 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~ 406 (693)
..|..+..+++|++|++++|.+.+..+.. + .+++|++|++++|.+.+... ...+..+++|++|++++|.+.+..+..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 66667777777777777777776544432 2 36677777777777755431 226778888888888888888777788
Q ss_pred hhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCC
Q 037315 407 IDGLSQLSHLILGNNNLEGEVPV-QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQG 485 (693)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
+..+++|++|++++|++++..+. .+..+++|++|++++|.+.+..|..+..
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------- 447 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------- 447 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------
Confidence 88888888888888888766554 3788888888888888888777776655
Q ss_pred cccccccceeeeecccceeeeccccccCcceEECCCCccccc---CchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315 486 HVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH---IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562 (693)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 562 (693)
+++|++|++++|++.+. .+..+..+++|++|++++|+++++.|..|.++++|
T Consensus 448 -------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 448 -------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp -------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred -------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 45788888888888762 23567888888888888888888888888888888
Q ss_pred CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
++|+|++|++++..|..+..+++| +|++++|++++..|..+..++++..+++++||+.|+|+.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 888888888888888888888888 888888888888787777788888888888888888864
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-54 Score=478.30 Aligned_cols=531 Identities=19% Similarity=0.168 Sum_probs=300.3
Q ss_pred CEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEE
Q 037315 21 RILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASL 100 (693)
Q Consensus 21 ~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 100 (693)
++++.+++.++ .+|. .+. ++|++|++++|++++. +...+.++++|++|++++|.+++..+..+. ...+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~---~l~~L~~L 85 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWH---GLHHLSNL 85 (606)
T ss_dssp TEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT---TCTTCCEE
T ss_pred CceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhh---chhhcCEe
Confidence 34455555554 4444 221 4455555555554422 223444555555555555544443333221 12245555
Q ss_pred ecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCC
Q 037315 101 SLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNN 179 (693)
Q Consensus 101 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n 179 (693)
++ +.+.+.+..|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ .++..++.+++|++|++++|
T Consensus 86 ~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 86 IL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EC-TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EC-CCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 55 444444444555566666666666666665433333 3566666666666666654 34555666666666666666
Q ss_pred cCcccCChhhhhcCCC----CcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccc
Q 037315 180 NFQGHIPVEIGDILPR----LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255 (693)
Q Consensus 180 ~~~~~~~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 255 (693)
++++..+..+.. +++ +++|++++|.+++..+..+... +|+.|++++|.+.+......+..+++|+.+++..+.+
T Consensus 164 ~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 164 YIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp CCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 666444433322 222 3466666666665544444433 6666666666655333333344566666666544332
Q ss_pred ccc------cCccCCCCC--CCCeEec-cCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc
Q 037315 256 KGH------MFSRNFNLI--NLRWLQL-EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326 (693)
Q Consensus 256 ~~~------~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 326 (693)
... ....+..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEccccc
Confidence 211 011111111 2334444 44445544444 556666666666666664 233 55566666666666666
Q ss_pred cccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc--CcccccCCCCCcEEeCcCcccCCCcc
Q 037315 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL--KGGTFFNCSSLVTLDLSYNLLNGSIP 404 (693)
Q Consensus 327 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~ 404 (693)
+ +.+| .+ .+++|+.|++++|+..+.. .....++|+.|++++|.+.+.. +. .+..+++|++|++++|.+.+ .|
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-EC
T ss_pred C-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-ch
Confidence 6 3444 33 5666666666666443332 2234556666666666664432 22 55666777777777776663 44
Q ss_pred hhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315 405 DWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH 483 (693)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
..+.++++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 446 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------------------------- 446 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------------------------
Confidence 566667777777777777766555 45666777777777777776666655544
Q ss_pred CCcccccccceeeeecccceeeeccccccCcceEECCCCcccc-cCchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315 484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG-HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 562 (693)
+++|++|++++|++.+ ..|..++.+++|++|++++|++++..|..|.++++|
T Consensus 447 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 447 ---------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ---------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 3467777777777665 356666777777777777777776666677777777
Q ss_pred CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccC-cCCcccccCccCCCCCCC
Q 037315 563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFA-TFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l~~~~~~~n~~~c~~~~ 626 (693)
++|++++|++++..|..+..+++|++|++++|+++ .+|.++..++ ++..+++++||+.|+|+.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 77777777777666677777777777777777766 4454455554 466677777777777664
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-54 Score=478.06 Aligned_cols=513 Identities=20% Similarity=0.180 Sum_probs=373.8
Q ss_pred CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI 80 (693)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (693)
|++|.|+++.|.+|+++++|++|||++|+++ .+.+..|+.+++|++|++++|++.+..| ..+.++++|++|++++|.+
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCc
Confidence 6899999999999999999999999999998 5544489999999999999999986555 6899999999999999998
Q ss_pred ccccccccCCCCCCccccEEecCCCCCCCCc-CchhhcCCCCCCEEEccCccccccCchhhhhcCCCCC--EEEccCCcc
Q 037315 81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVT-FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLR--QLSLVNDSL 157 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~ 157 (693)
+...+..+. ...+|++|++ +.+.+.+. .|... .+++|++|++++|.+.+..+..+ +.+++|+ +|++++|.+
T Consensus 118 ~~l~~~~~~---~l~~L~~L~L-~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 118 SSIDFIPLH---NQKTLESLYL-GSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp SCGGGSCCT---TCTTCCEEEC-CSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCC
T ss_pred ccCCcchhc---cCCcccEEEC-CCCcccccCccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCcc
Confidence 764433321 2235666666 44444442 23222 25555666665555554433332 4555555 555555555
Q ss_pred cccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchH
Q 037315 158 AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH 237 (693)
Q Consensus 158 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 237 (693)
.+..+..+.. .+|++|++++|.. ++..+.. +.+++...+....+. .+. .. .++..
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~-----------~~~--------~~-~i~~~ 246 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFE-----------DMD--------DE-DISPA 246 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCT-----------TSC--------CC-CCCGG
T ss_pred CccChhHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhc-----------ccc--------cc-ccChh
Confidence 5444333322 3455555555531 1111111 233222222211111 000 01 22222
Q ss_pred HhhCCC--CCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCC
Q 037315 238 LAMGCV--NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 315 (693)
Q Consensus 238 ~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 315 (693)
.+.++. +|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 222222 6777788888777777777777788888888888777 5666777778888888888877766677777788
Q ss_pred CCcEEEccCCccccCccc-cccCCCCCCEEECcCCcCCCCC--CC-CCCCCcccEEEccCcccccccCcccccCCCCCcE
Q 037315 316 WLIHIIMPKNHLEGPIPV-EFCHLYSLQILDISDNNISGSL--PS-CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391 (693)
Q Consensus 316 ~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 391 (693)
+|++|++++|.+.+..+. .+..+++|++|++++|.+.+.. +. ...+++|+.|++++|.+.+..+. .+..+++|++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLEL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCe
Confidence 888888888877644433 4777888888888888776553 33 33467788888888887665554 8889999999
Q ss_pred EeCcCcccCCCcch-hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC-C--CCcccCccccccCCC
Q 037315 392 LDLSYNLLNGSIPD-WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI-P--PCFDNTKLHESYNNS 467 (693)
Q Consensus 392 L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~--~~~~~~~l~~~~~~~ 467 (693)
|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.. + ..+..
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------- 474 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT---------- 474 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG----------
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc----------
Confidence 99999999876554 5889999999999999999888999999999999999999987632 1 22322
Q ss_pred CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 547 (693)
+++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus 475 -------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 475 -------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp -------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 6689999999999999999999999999999999999
Q ss_pred CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315 548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
+++..|..+.++++| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999 999999999999999999999999999999999997763
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-52 Score=464.46 Aligned_cols=563 Identities=20% Similarity=0.196 Sum_probs=441.5
Q ss_pred CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315 2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN 81 (693)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (693)
++++++.. |..+. +++++|||++|.++ .++...|.++++|++|++++|++++..| ..+.++++|++|++++|.++
T Consensus 19 ~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 19 MDQKLSKV-PDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TTSCCSSC-CTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCC
T ss_pred cCCCcccC-CCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCccc
Confidence 45666644 54443 88999999999998 6665589999999999999999985444 67899999999999999998
Q ss_pred cccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccc-cCchhhhhcCCCCCEEEccCCccccc
Q 037315 82 AKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNG-EFPNWLLENNTKLRQLSLVNDSLAGP 160 (693)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 160 (693)
+..+..+. ...+|++|++ +.+.+.+..+..++.+++|++|++++|.+.+ .+|..+ +++++|++|++++|.+++.
T Consensus 94 ~~~p~~~~---~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 94 SFSPGSFS---GLTSLENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCTTSST---TCTTCCEEEC-TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEE
T ss_pred ccChhhcC---CcccCCEEEc-cCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceec
Confidence 77666543 3348999999 8888877776778999999999999999986 567765 8999999999999999988
Q ss_pred CCCCCCCCCCCC----EEEccCCcCcccCChhhhhcCCCCcEEEccCCccc-ccCCccCCCCCCCCEEEcccCcccc---
Q 037315 161 FRLPIHSHRHLR----LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALD-GSIPSSFGNMNLLQILDLSNNQLTG--- 232 (693)
Q Consensus 161 ~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~--- 232 (693)
.+..++.+++|+ +|++++|.++ .++...+.. .+|++|++++|.+. +..|..+.+++.|+.+++..+.+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 777777766655 8999999998 566666653 48999999999886 4567788899999999886654331
Q ss_pred --ccchHHhhCCC--CCcEEEc-cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccC
Q 037315 233 --EIPEHLAMGCV--NLEFLAL-SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 307 (693)
Q Consensus 233 --~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 307 (693)
.++...+.++. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccc
Confidence 12223322222 4666777 56777777766 889999999999999997 455 788899999999999999 467
Q ss_pred CccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCC--CC-CCCCCcccEEEccCcccccccCccccc
Q 037315 308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL--PS-CFHPLSITQVHLSKNMLHGQLKGGTFF 384 (693)
Q Consensus 308 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~ 384 (693)
| .+ .+++|++|++++|...+. ..+..+++|+.|++++|.+.+.. +. ...+++|+.|++++|.+.+ ++ ..+.
T Consensus 323 p-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~ 396 (606)
T 3vq2_A 323 P-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFM 396 (606)
T ss_dssp C-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCT
T ss_pred c-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhcc
Confidence 7 44 899999999999965543 35778999999999999987652 33 3347889999999999865 44 3889
Q ss_pred CCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc-cCCCCcccCcccc
Q 037315 385 NCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG-LIPPCFDNTKLHE 462 (693)
Q Consensus 385 ~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~ 462 (693)
.+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++..|..+.++++|++|++++|++.+ ..|..+..
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----- 471 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN----- 471 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-----
Confidence 99999999999999998777 689999999999999999999899999999999999999999987 46776655
Q ss_pred ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN 542 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 542 (693)
+++|++|++++|++++..|..+..+++|++|+
T Consensus 472 ------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 472 ------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp ------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 55899999999999999999999999999999
Q ss_pred CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC-CCCEEecCCCcCcccCCC-CccccCcCCcccccCccC
Q 037315 543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK-ELAVFSVAYNNLSGEIPE-WKAQFATFNENSYEGNTF 620 (693)
Q Consensus 543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~~~~l~~~~~~~n~~ 620 (693)
+++|++++.+|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++. |+.++. ..++.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l-------~~~~~ 575 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV-------KEQKQ 575 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT-------TTSSS
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHH-------HcCcc
Confidence 9999999999999999999999999999998 5666688887 599999999999997774 111111 11111
Q ss_pred CC-CCCCCCCCCCCCCCccccccccCCC
Q 037315 621 LC-GLPLPICRSPTTMSEASIENERDDN 647 (693)
Q Consensus 621 ~c-~~~~~~c~~~~~~~~~~~~~~~~~~ 647 (693)
.. +.....|..|....+..+.+++.+.
T Consensus 576 ~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 576 FLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp SBSSGGGCCCC-----------------
T ss_pred cccCCccceeCCChHhCCCEeeeccccc
Confidence 11 1112357777777766666555443
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-52 Score=479.84 Aligned_cols=505 Identities=21% Similarity=0.206 Sum_probs=422.7
Q ss_pred CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI 80 (693)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (693)
||+|.|+++.|.+|.++++|++|||++|...+.+++..|+++++|++|+|++|.+.+..| ..+.++++|++|++++|.+
T Consensus 31 Ls~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCC
T ss_pred CCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCC
Confidence 578999999999999999999999999976668865589999999999999999986656 6899999999999999999
Q ss_pred ccccccccCCCCCCccccEEecCCCCCCCCcC-chhhcCCCCCCEEEccCccccccCchhhhhcC--CCCCEEEccCCcc
Q 037315 81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTF-PKFLYYQHDLEDVHFSRIQMNGEFPNWLLENN--TKLRQLSLVNDSL 157 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~ 157 (693)
.+..+.... .....+|++|++ +.+.+.+.. +..++.+++|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+
T Consensus 110 ~~~~~~~~~-~~~L~~L~~L~L-s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 110 SDAVLKDGY-FRNLKALTRLDL-SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp SSCCSTTCC-CSSCSSCCEEEE-ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBS
T ss_pred CcccccCcc-ccccCCCCEEEC-CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCcc
Confidence 875444211 233459999999 677776654 4678999999999999999988777665 455 8999999999999
Q ss_pred cccCCCCCCCCCC------CCEEEccCCcCcccCChhhhhcC--CCCcEEEccCC---------cccccCCccCCCC--C
Q 037315 158 AGPFRLPIHSHRH------LRLLDVSNNNFQGHIPVEIGDIL--PRLISFNISMN---------ALDGSIPSSFGNM--N 218 (693)
Q Consensus 158 ~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~L~~n---------~i~~~~~~~~~~l--~ 218 (693)
.+..+..+..+++ |++|++++|.+++..+..+...+ ++++.+.++.+ .+.+..+..|..+ +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 9877776666655 99999999999888887776543 47888888743 2333334455554 7
Q ss_pred CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315 219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298 (693)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 298 (693)
+|+.|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 267 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 8999999999998 444455567999999999999999998999999999999999999999888889999999999999
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL 378 (693)
Q Consensus 299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 378 (693)
++|.+....+..+..+++|++|++++|.+.+. ..+++|+.|++++|++.. ++.. ..+++.+++++|++.+..
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~--~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI--NLTANLIHLSENRLENLD 417 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC--CTTCCEEECCSCCCCSST
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc--ccccceeecccCccccCc
Confidence 99999988888899999999999999998743 348899999999999983 3332 567999999999997654
Q ss_pred CcccccCCCCCcEEeCcCcccCCCcch-hhhCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315 379 KGGTFFNCSSLVTLDLSYNLLNGSIPD-WIDGLSQLSHLILGNNNLE-----GEVPVQLCGLNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 452 (693)
....+..+++|+.|++++|.+++..+. .+..+++|++|++++|.++ +..+..|.++++|++|+|++|++++.+|
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 333456899999999999999865443 4567899999999999997 3445678899999999999999999998
Q ss_pred CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 532 (693)
..|.. +++|+.|+|++|++++..+..+
T Consensus 498 ~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 498 GVFSH-----------------------------------------------------LTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp TSSSS-----------------------------------------------------CCSCSEEEEESCCCSSCCCCCC
T ss_pred hHccc-----------------------------------------------------hhhhheeECCCCCCCccChhhh
Confidence 88866 5589999999999998777776
Q ss_pred ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC
Q 037315 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576 (693)
Q Consensus 533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 576 (693)
. ++|+.|+|++|++++.+|..|. +|+.|++++|++.+..
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC 563 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred h--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccc
Confidence 6 8999999999999999988764 7999999999997643
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=423.49 Aligned_cols=492 Identities=21% Similarity=0.241 Sum_probs=322.5
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccc
Q 037315 18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQL 97 (693)
Q Consensus 18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 97 (693)
+++++|||++|.++ .++...|..+++|++|++++|++++ ++...+.++++|++|++++|.++..
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~-------------- 91 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL-------------- 91 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEE--------------
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCcc--------------
Confidence 45777777777776 4444366777777777777777653 3335566677777777777665432
Q ss_pred cEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEc
Q 037315 98 ASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDV 176 (693)
Q Consensus 98 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l 176 (693)
.+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ .++..++.+++|++|++
T Consensus 92 --------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 92 --------------ALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp --------------CTTTTTTCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred --------------CHhhhcCccccccccccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 2344556677777777777765433222 3677788888888887765 34666777788888888
Q ss_pred cCCcCcccCChhhhhcCCCC----cEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccc
Q 037315 177 SNNNFQGHIPVEIGDILPRL----ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252 (693)
Q Consensus 177 ~~n~~~~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 252 (693)
++|++++..+..+.. +++| ++|++++|.+.+..+..+... +|+.|++++|............++++++.+.+..
T Consensus 157 ~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp TTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred cCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecc
Confidence 888877444444443 5566 778888888877777766655 6888888877543222223334577777666543
Q ss_pred cccc------cccCccCCCCC--CCCeEeccCc-cccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEcc
Q 037315 253 NSLK------GHMFSRNFNLI--NLRWLQLEGN-HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP 323 (693)
Q Consensus 253 n~l~------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 323 (693)
..+. ......+..++ .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|+++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEE
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeec
Confidence 3221 11222222222 2455556555 555566667777777777777777776 466666666 77777777
Q ss_pred CCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccC-cccccCCCCCcEEeCcCcccCCC
Q 037315 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK-GGTFFNCSSLVTLDLSYNLLNGS 402 (693)
Q Consensus 324 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~ 402 (693)
+|.+. ..|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+..+++|++|++++|.+.+.
T Consensus 313 ~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 388 (570)
T 2z63_A 313 NCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388 (570)
T ss_dssp SCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred cCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence 77776 3333 3567777777777776654443 446667777777776644321 12556677777777777777644
Q ss_pred cchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhc
Q 037315 403 IPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIK 481 (693)
Q Consensus 403 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 481 (693)
.+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 389 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------ 443 (570)
T 2z63_A 389 SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------ 443 (570)
T ss_dssp EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------
T ss_pred ccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------
Confidence 333 7777777777777777775544 45677777777777777777666666544
Q ss_pred ccCCcccccccceeeeecccceeeeccccccCcceEECCCCccc-ccCchhhccCCCCCeeeCCCccCCccCcccccCCC
Q 037315 482 GHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI-GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK 560 (693)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 560 (693)
+++|++|++++|++. +.+|..+..+++|++|++++|++++..|..|.+++
T Consensus 444 -----------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 444 -----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp -----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -----------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 446777777777776 45667777777777777777777777777777777
Q ss_pred CCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315 561 QIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 561 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
+|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 777777777777777666777777777777777777777664
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=416.47 Aligned_cols=466 Identities=20% Similarity=0.178 Sum_probs=392.1
Q ss_pred cccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEE
Q 037315 96 QLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD 175 (693)
Q Consensus 96 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 175 (693)
++++|++ +++.+.+..+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|+
T Consensus 29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 7999999 888888777778899999999999999988655554 48899999999999999988888899999999999
Q ss_pred ccCCcCcccCChhhhhcCCCCcEEEccCCcccc-cCCccCCCCCCCCEEEcccCccccccchHHhhCCCCC----cEEEc
Q 037315 176 VSNNNFQGHIPVEIGDILPRLISFNISMNALDG-SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL----EFLAL 250 (693)
Q Consensus 176 l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l 250 (693)
+++|+++ .++......+++|++|++++|.+.+ ..|..|+++++|++|++++|.+. .++...+..+++| ++|++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 9999998 4554333448899999999999986 36889999999999999999998 4443334457777 89999
Q ss_pred cccccccccCccCCCCCCCCeEeccCccccc-------------------------------cCCcCCcCCC--CCCEEe
Q 037315 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVG-------------------------------EIPQSLSKCS--SLEGLY 297 (693)
Q Consensus 251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------~~~~~l~~l~--~L~~L~ 297 (693)
++|.+.+..+..+... +|++|++++|.... .....+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999999888777665 79999998873221 1111222222 245566
Q ss_pred ccCC-cccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccc
Q 037315 298 LNNN-SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHG 376 (693)
Q Consensus 298 L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 376 (693)
++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ...++|+.|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence 6666 666777888999999999999999988 567778888 9999999999998 4444 467899999999999876
Q ss_pred ccCcccccCCCCCcEEeCcCcccCCCc--chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC-C
Q 037315 377 QLKGGTFFNCSSLVTLDLSYNLLNGSI--PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP-P 453 (693)
Q Consensus 377 ~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~ 453 (693)
..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ .
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 6553 67899999999999998654 67899999999999999999965554 9999999999999999987765 3
Q ss_pred CcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc
Q 037315 454 CFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG 533 (693)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 533 (693)
.+.. +++|++|++++|++.+..|..+.
T Consensus 416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence 4433 56899999999999999999999
Q ss_pred cCCCCCeeeCCCccCC-ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCc
Q 037315 534 NLTRIQTLNLSHNNLT-GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNE 612 (693)
Q Consensus 534 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~ 612 (693)
.+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++++..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999998 567899999999999999999999999999999999999999999999998888889999999
Q ss_pred ccccCccCCCCCCCC
Q 037315 613 NSYEGNTFLCGLPLP 627 (693)
Q Consensus 613 ~~~~~n~~~c~~~~~ 627 (693)
+++++||+.|+|+..
T Consensus 523 L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 523 IWLHTNPWDCSCPRI 537 (570)
T ss_dssp EECCSSCBCCCTTTT
T ss_pred EEecCCcccCCCcch
Confidence 999999999999864
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-47 Score=415.65 Aligned_cols=486 Identities=20% Similarity=0.194 Sum_probs=350.6
Q ss_pred CCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcc
Q 037315 17 MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ 96 (693)
Q Consensus 17 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 96 (693)
++...+.|.+++.++ .+|. .+. ++|++|++++|++++..| ..+.++++|++|++++|.+++..
T Consensus 4 C~~~~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~------------ 66 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIE------------ 66 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEEC------------
T ss_pred CCCCceEECCCCccc-cccc-cCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccC------------
Confidence 344445678888887 7877 443 688888888888865444 56788888888888887765432
Q ss_pred ccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEE
Q 037315 97 LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLD 175 (693)
Q Consensus 97 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 175 (693)
+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++. .+..++.+++|++|+
T Consensus 67 ----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 67 ----------------GDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp ----------------TTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred ----------------hhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 233455667777777777777554444 37888888888888888763 456688889999999
Q ss_pred ccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccc
Q 037315 176 VSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255 (693)
Q Consensus 176 l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 255 (693)
+++|...+.+|...+..+++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++..+++|++|++++|++
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 99998544666544445889999999999999888999999999999999999887 77877777789999999999998
Q ss_pred cccc---CccCCCCCCCCeEeccCccccccCC----cCCcCCCCCCEEeccCCcccccC------CccccCCCCCcEEEc
Q 037315 256 KGHM---FSRNFNLINLRWLQLEGNHFVGEIP----QSLSKCSSLEGLYLNNNSLSGKI------PRWLGNLTWLIHIIM 322 (693)
Q Consensus 256 ~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~~------~~~l~~l~~L~~L~l 322 (693)
.+.. ......+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+.. ...+..+++++.+++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 8752 1223457889999999998775433 33456788999999998876531 123456778888888
Q ss_pred cCCccccC-----ccccccCCCCCCEEECcCCcCCCCCCCCC--CCCcccEEEccCcccccccCc--ccccCCCCCcEEe
Q 037315 323 PKNHLEGP-----IPVEFCHLYSLQILDISDNNISGSLPSCF--HPLSITQVHLSKNMLHGQLKG--GTFFNCSSLVTLD 393 (693)
Q Consensus 323 ~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~ 393 (693)
.++.+... .+..+...++|+.|++++|.+. .+|..+ ..++|+.|++++|++.+.++. ..+..+++|++|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 88766532 1112334567888888888876 344332 367788888888877665432 2356778888888
Q ss_pred CcCcccCCCcc--hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCc
Q 037315 394 LSYNLLNGSIP--DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPD 471 (693)
Q Consensus 394 L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (693)
+++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+.....
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~----------------- 429 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI----------------- 429 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS-----------------
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh-----------------
Confidence 88888775432 45777888888888888887 56667777888888888888776432211
Q ss_pred hhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc
Q 037315 472 EQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL 551 (693)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 551 (693)
+++|++|++++|++++.. ..+++|++|+|++|+++.+
T Consensus 430 ---------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i 466 (549)
T 2z81_A 430 ---------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL 466 (549)
T ss_dssp ---------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC
T ss_pred ---------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC
Confidence 235778888888877542 4677888888888888754
Q ss_pred CcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 552 IPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|
T Consensus 467 -p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 467 -PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 33 3567788888888888887777777888888888888888877766
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.9e-45 Score=409.30 Aligned_cols=533 Identities=20% Similarity=0.204 Sum_probs=359.7
Q ss_pred CCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcccc
Q 037315 19 SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLA 98 (693)
Q Consensus 19 ~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 98 (693)
++++|||++|+|+ .+++.+|.++++|++|||++|++++ ++..+|.++++|++|++++|+++.
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~---------------- 114 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS---------------- 114 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE----------------
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCC----------------
Confidence 5666666666666 5554456666666666666666653 333456666666666666665543
Q ss_pred EEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEEcc
Q 037315 99 SLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLDVS 177 (693)
Q Consensus 99 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~ 177 (693)
..+..+..+++|++|++++|.+.+. +...++++++|++|++++|.+++. .+..++.+++|++|+++
T Consensus 115 ------------l~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 115 ------------LALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ------------ECGGGGTTCTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred ------------CCHHHhcCCCCCCEEECCCCcCCCC-ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 2234456677777777777777643 333347778888888888877653 34556777788888888
Q ss_pred CCcCcccCChhhhh---cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccc
Q 037315 178 NNNFQGHIPVEIGD---ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254 (693)
Q Consensus 178 ~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 254 (693)
+|++++..+..+.. .-.....++++.|.+....+..+ ....++.+++.+|.....++...+.++..++...+..+.
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence 88877544444332 11234567788888775554443 334567777777765545555555567777766665432
Q ss_pred cc------cccCccCCCCCCCCeEeccCccccc---cCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCC
Q 037315 255 LK------GHMFSRNFNLINLRWLQLEGNHFVG---EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN 325 (693)
Q Consensus 255 l~------~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 325 (693)
.. ......+.....+....+..+.... .....+..+.+++.+++.++.+... ..+.....++.|++.+|
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNC 338 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccc
Confidence 22 2222333344445555444332221 2233455566777887777776533 23455667788888887
Q ss_pred ccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc-CcccccCCCCCcEEeCcCcccCCCcc
Q 037315 326 HLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL-KGGTFFNCSSLVTLDLSYNLLNGSIP 404 (693)
Q Consensus 326 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~ 404 (693)
.+....+ ..++.|+.+++..|.... .......++|+.+++++|.+.... ....+..+.+|+.+++..+... ..+
T Consensus 339 ~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~ 413 (635)
T 4g8a_A 339 KFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS 413 (635)
T ss_dssp EESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred cccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence 7764433 345677778877776653 233345677888888887764321 1124556778888888888776 345
Q ss_pred hhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315 405 DWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH 483 (693)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
..+..+++|+.+++..+......+ ..+..+++++.+++++|.+.+..+..+..
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------- 467 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------- 467 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred ccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc--------------------------
Confidence 567788888888888887665443 45778888888888888888777766655
Q ss_pred CCcccccccceeeeecccceeeeccccccCcceEECCCCcc-cccCchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315 484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 562 (693)
++.++.|++++|.+ .+..|..|..+++|++|+|++|++++++|..|.++++|
T Consensus 468 ---------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 468 ---------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ---------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 45788899988874 44567788888999999999999988888889999999
Q ss_pred CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc-CcCCcccccCccCCCCCCCC--------------
Q 037315 563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF-ATFNENSYEGNTFLCGLPLP-------------- 627 (693)
Q Consensus 563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~~-------------- 627 (693)
++|+|++|++++..|..|..+++|++|++++|++++..|+.+..+ .+++.+++++|||.|+|+..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~ 600 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence 999999999988888888888999999999999998888877766 57888889999999988652
Q ss_pred -----CCCCCCCCCccccccc
Q 037315 628 -----ICRSPTTMSEASIENE 643 (693)
Q Consensus 628 -----~c~~~~~~~~~~~~~~ 643 (693)
.|..|...++..+.++
T Consensus 601 ~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 601 EVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp CGGGCBBCSSTTTTTCBGGGC
T ss_pred CCCCceeCCchHHCCCEeeee
Confidence 4877777777666555
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-47 Score=422.87 Aligned_cols=393 Identities=19% Similarity=0.237 Sum_probs=258.0
Q ss_pred CCcccccCCCCCCCCCCCCEEEccCCcCccc-----------------CChhhh--hcCCCCcEEEccCCcccccCCccC
Q 037315 154 NDSLAGPFRLPIHSHRHLRLLDVSNNNFQGH-----------------IPVEIG--DILPRLISFNISMNALDGSIPSSF 214 (693)
Q Consensus 154 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~ 214 (693)
.|.+++ +|..++.+++|++|++++|.+++. +|..++ . +++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHH
Confidence 355665 566666677777777777776653 666655 4 6677777777777776777777
Q ss_pred CCCCCCCEEEcccCc-ccc-ccchHHhh-----CCCCCcEEEccccccccccCc--cCCCCCCCCeEeccCccccccCCc
Q 037315 215 GNMNLLQILDLSNNQ-LTG-EIPEHLAM-----GCVNLEFLALSNNSLKGHMFS--RNFNLINLRWLQLEGNHFVGEIPQ 285 (693)
Q Consensus 215 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 285 (693)
+++++|++|++++|+ +++ .+|..+.. .+++|++|++++|+++ ..|. .+..+++|++|++++|.+.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 777777777777776 665 56665542 1266777777766666 3444 56666666666666666665556
Q ss_pred CCcCCCCCCEEeccCCcccccCCccccCCCC-CcEEEccCCccccCccccccCCC--CCCEEECcCCcCCCCCCCCCCCC
Q 037315 286 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW-LIHIIMPKNHLEGPIPVEFCHLY--SLQILDISDNNISGSLPSCFHPL 362 (693)
Q Consensus 286 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~ 362 (693)
.+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+...
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 5666666666666666666 55555666666 666666666665 4454444433 56666666666654444322100
Q ss_pred cccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCC-------C
Q 037315 363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGL-------N 435 (693)
Q Consensus 363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~ 435 (693)
.. ....+++|++|++++|.++...+..+..+++|++|++++|+++...+..+... +
T Consensus 426 ----------------~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 426 ----------------DP-TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp ----------------CS-SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred ----------------cc-ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 00 11155688888888888885555556678888888888888884333333333 2
Q ss_pred CCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc
Q 037315 436 QLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS 515 (693)
Q Consensus 436 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 515 (693)
+|++|++++|+++. +|..+... .+++|+
T Consensus 489 ~L~~L~Ls~N~l~~-lp~~~~~~---------------------------------------------------~l~~L~ 516 (636)
T 4eco_A 489 LLTSIDLRFNKLTK-LSDDFRAT---------------------------------------------------TLPYLV 516 (636)
T ss_dssp GCCEEECCSSCCCB-CCGGGSTT---------------------------------------------------TCTTCC
T ss_pred CccEEECcCCcCCc-cChhhhhc---------------------------------------------------cCCCcC
Confidence 88888888888873 44433200 155788
Q ss_pred eEECCCCcccccCchhhccCCCCCeeeC------CCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315 516 GLDLSCNKLIGHIPPQVGNLTRIQTLNL------SHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589 (693)
Q Consensus 516 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 589 (693)
+|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+.++++|++|+|++|++ +.+|..+. ++|+.|
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L 592 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL 592 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence 88888888886 7888888888888888 56778888899999999999999999999 46777655 799999
Q ss_pred ecCCCcCcccCCCCccc--cCcCCcccccCccCCCCCC
Q 037315 590 SVAYNNLSGEIPEWKAQ--FATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 590 ~l~~N~l~~~~p~~~~~--~~~l~~~~~~~n~~~c~~~ 625 (693)
++++|++.+.....+.. ......+.+......|+|+
T Consensus 593 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp ECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred ECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 99999888754433322 1222333444455555654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-45 Score=404.79 Aligned_cols=479 Identities=19% Similarity=0.202 Sum_probs=354.0
Q ss_pred CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315 2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN 81 (693)
Q Consensus 2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (693)
++|+++.+ |..+. ++|++|||++|+++ .++...|..+++|++|++++|++++..| ..+.++++|++|++++|.+.
T Consensus 13 ~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 13 RSRSFTSI-PSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp TTSCCSSC-CSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCC
T ss_pred CCCccccc-cccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccC
Confidence 56777754 54443 79999999999998 5544489999999999999999986544 68999999999999999998
Q ss_pred cccccccCCCCCCccccEEecCCCCCCCC-cCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc
Q 037315 82 AKITKSHTLTTPKFQLASLSLSSSYGDGV-TFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP 160 (693)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 160 (693)
+..+..+. ...+|++|++ +++.+.+ ..|..++.+++|++|++++|...+.++...++++++|++|++++|.+++.
T Consensus 88 ~~~~~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 88 SLSSSWFG---PLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCHHHHT---TCTTCCEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred ccCHHHhc---cCCCCcEEEC-CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 76554433 2348999999 6777765 46677889999999999999866666654458899999999999999988
Q ss_pred CCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccC--C-ccCCCCCCCCEEEcccCccccccchH
Q 037315 161 FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSI--P-SSFGNMNLLQILDLSNNQLTGEIPEH 237 (693)
Q Consensus 161 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 237 (693)
.+..+..+++|++|++++|.+. .+|..+...+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..+..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 8888999999999999999886 667776666889999999999988642 1 23346788999999999887655444
Q ss_pred Hh---hCCCCCcEEEccccccccccC------ccCCCCCCCCeEeccCccccccC-----CcCCcCCCCCCEEeccCCcc
Q 037315 238 LA---MGCVNLEFLALSNNSLKGHMF------SRNFNLINLRWLQLEGNHFVGEI-----PQSLSKCSSLEGLYLNNNSL 303 (693)
Q Consensus 238 ~~---~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~i 303 (693)
+. ..+++|+.+++++|.+.+... ..+..+++|+.|++.++.+.... +..+...++|+.|++++|.+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 32 346788888888887765321 22345566666666666544211 01112234555566665555
Q ss_pred cccCCccc-cCCCCCcEEEccCCccccCcc---ccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccC
Q 037315 304 SGKIPRWL-GNLTWLIHIIMPKNHLEGPIP---VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK 379 (693)
Q Consensus 304 ~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 379 (693)
. .+|..+ ..+++|++|++++|.+.+..| ..+..+++|+.|++++|++. +..+
T Consensus 323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~~~ 378 (549)
T 2z81_A 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----------------------SMQK 378 (549)
T ss_dssp C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----------------------CHHH
T ss_pred c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-----------------------cccc
Confidence 4 333333 345555555555555554332 12444555555555555543 3221
Q ss_pred -cccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315 380 -GGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT 458 (693)
Q Consensus 380 -~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 458 (693)
...+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++..+ .++|++|++++|++++.++ .
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~----~- 449 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL----F- 449 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC----C-
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc----c-
Confidence 125778899999999999998 678888899999999999999984 34333 3699999999999886431 1
Q ss_pred ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315 459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI 538 (693)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 538 (693)
+++|++|++++|+++ .+|. ...+++|
T Consensus 450 ----------------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 450 ----------------------------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred ----------------------------------------------------CChhcEEECCCCccC-cCCC-cccCccC
Confidence 568999999999998 4554 5679999
Q ss_pred CeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCC
Q 037315 539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577 (693)
Q Consensus 539 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 577 (693)
++|+|++|++++.+|..|..+++|++|++++|++.+..|
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999999999999999999999999999986655
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-46 Score=417.63 Aligned_cols=453 Identities=18% Similarity=0.210 Sum_probs=232.5
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCc------C------cCCcccccCCCCCcEEEccCCccccccc
Q 037315 18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH------I------PISLEPLFNHSRLKIFYADNNPINAKIT 85 (693)
Q Consensus 18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~------~------~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (693)
.+++.|+|+++.++|.+|+ .+++|++|++|+|++|.+. + .+|... +.+|+ ++++.+.+.+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTSCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCcccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCch
Confidence 5799999999999999998 8999999999999999761 1 222111 34455 6666665555444
Q ss_pred cccCCCCC----------------CccccEEecCC-CCCCCCcCchhhcCCCCCCEEEccCcccccc-------------
Q 037315 86 KSHTLTTP----------------KFQLASLSLSS-SYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE------------- 135 (693)
Q Consensus 86 ~~~~~~~~----------------~~~L~~L~L~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------- 135 (693)
..+..... ...++.+.+.. .+.+++ +|..++.+++|++|++++|.+.+.
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 33221100 00111112211 223333 445555555555555555555443
Q ss_pred ----Cchhhhh--cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCc-Ccc-cCChhhhhcCCCCcEEEccCCccc
Q 037315 136 ----FPNWLLE--NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN-FQG-HIPVEIGDILPRLISFNISMNALD 207 (693)
Q Consensus 136 ----~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~-~~~~~~~~~l~~L~~L~L~~n~i~ 207 (693)
+|..+ + ++++|++|++++|.+.+.++..++.+++|++|++++|+ +++ .+|..++. +.
T Consensus 235 ~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~------------- 299 (636)
T 4eco_A 235 AQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LA------------- 299 (636)
T ss_dssp HHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HH-------------
T ss_pred hcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hh-------------
Confidence 44332 3 44555555555554444444444445555555555554 444 44444433 10
Q ss_pred ccCCccCCCCCCCCEEEcccCccccccch-HHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcC
Q 037315 208 GSIPSSFGNMNLLQILDLSNNQLTGEIPE-HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS 286 (693)
Q Consensus 208 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 286 (693)
.+..+++|++|++++|.++ .+|. ..+..+++|++|++++|.+.+..| .+..+++|++|++++|.++ .+|..
T Consensus 300 -----~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 300 -----DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp -----HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT
T ss_pred -----ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHh
Confidence 0000145555555555544 4444 112234555555555555544344 4444555555555555554 44444
Q ss_pred CcCCCC-CCEEeccCCcccccCCccccCCC--CCcEEEccCCccccCcccccc-------CCCCCCEEECcCCcCCCCCC
Q 037315 287 LSKCSS-LEGLYLNNNSLSGKIPRWLGNLT--WLIHIIMPKNHLEGPIPVEFC-------HLYSLQILDISDNNISGSLP 356 (693)
Q Consensus 287 l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~ 356 (693)
+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|++++|++.+..+
T Consensus 372 l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 555555 555555555554 3444444332 455555555555554444444 44455555555555542111
Q ss_pred CCCC-CCcccEEEccCcccccccCcccc-------cCCCCCcEEeCcCcccCCCcchhhh--CCCCCCEEEccCCccccc
Q 037315 357 SCFH-PLSITQVHLSKNMLHGQLKGGTF-------FNCSSLVTLDLSYNLLNGSIPDWID--GLSQLSHLILGNNNLEGE 426 (693)
Q Consensus 357 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~-------~~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~ 426 (693)
..+. .++|+.|++++|++. .++...+ .++++|++|++++|.++ .+|..+. .+++|++|++++|++++
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 1110 112222222222221 1111111 12225555555555555 3444443 45555555555555553
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
+|..+..+++|++|++++|+
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~------------------------------------------------------------ 547 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQR------------------------------------------------------------ 547 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCB------------------------------------------------------------
T ss_pred cChhhhcCCCCCEEECCCCc------------------------------------------------------------
Confidence 44444445555555554442
Q ss_pred ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCC
Q 037315 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 577 (693)
++++|++.+.+|..+..+++|++|+|++|+++. +|..+. ++|+.|++++|++.....
T Consensus 548 -----------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 548 -----------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp -----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred -----------ccccCcccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCccccH
Confidence 125677788888899999999999999999954 465555 799999999998875443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-46 Score=405.38 Aligned_cols=454 Identities=18% Similarity=0.190 Sum_probs=259.8
Q ss_pred EEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEEe
Q 037315 22 ILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLS 101 (693)
Q Consensus 22 ~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 101 (693)
+||+++|+++ .+|. .+. ++|++|++++|.+++. +...+.++++|++|++++|.+++..+
T Consensus 4 ~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------- 62 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDI---------------- 62 (520)
T ss_dssp EEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEG----------------
T ss_pred eEecCCCCcc-cccc-ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcCh----------------
Confidence 4555555555 4554 232 4555555555555432 22345555555555555554432211
Q ss_pred cCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCCc
Q 037315 102 LSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNN 180 (693)
Q Consensus 102 L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~ 180 (693)
..+..+++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..+..++.+++|++|++++|.
T Consensus 63 ------------~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 63 ------------SVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ------------GGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ------------HHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 12223333333333333333 12221 33444444444444433 123334444444444444444
Q ss_pred CcccCChhhhhcCCCC--cEEEccCCcc--cccCCccCCCCC-CCCEEEcccCccccccchHHhhCCCCCcEEEccccc-
Q 037315 181 FQGHIPVEIGDILPRL--ISFNISMNAL--DGSIPSSFGNMN-LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS- 254 (693)
Q Consensus 181 ~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~- 254 (693)
+++ ..+. .+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|.
T Consensus 127 l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 127 LEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp CCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred cch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 432 1111 13344 5555555554 344444444333 122344445554444444444445555555555554
Q ss_pred ------cccccCccCCCCCCCCeEeccCccccccCCcCC---cCCCCCCEEeccCCcccccCCccc-----cCCCCCcEE
Q 037315 255 ------LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSL---SKCSSLEGLYLNNNSLSGKIPRWL-----GNLTWLIHI 320 (693)
Q Consensus 255 ------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~L~~L 320 (693)
+.+..+ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+.+.+|..+ +.+++|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 333222 44455555555555555443211110 012356666666666665555555 556666666
Q ss_pred EccCCccccCcc-ccccCC---CCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC
Q 037315 321 IMPKNHLEGPIP-VEFCHL---YSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY 396 (693)
Q Consensus 321 ~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 396 (693)
++++|.+ ..| ..+..+ .+|+.|++++|.+... + .+..+++|++|++++
T Consensus 282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~------------------------~--~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM------------------------L--CPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC------------------------C--CCSSCCCCCEEECCS
T ss_pred cccccce--ecchhhhhcccccCceeEEEcCCCccccc------------------------c--chhhCCcccEEEeEC
Confidence 6666665 222 223222 4566666666655421 0 124677888888888
Q ss_pred cccCCCcchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEccCCcCcccCC-CCcccCccccccCCCCCCchh
Q 037315 397 NLLNGSIPDWIDGLSQLSHLILGNNNLEG--EVPVQLCGLNQLQLLDLSNNNLHGLIP-PCFDNTKLHESYNNSSSPDEQ 473 (693)
Q Consensus 397 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 473 (693)
|.+++..|.++..+++|++|++++|++++ ..|..+..+++|++|++++|++.+.+| ..+..
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---------------- 397 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---------------- 397 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----------------
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----------------
Confidence 88887778888888888888888888885 445668888888888888888877333 33333
Q ss_pred hhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc
Q 037315 474 FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP 553 (693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 553 (693)
+++|++|++++|++++..|..+. ++|++|++++|+++.+ |
T Consensus 398 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p 437 (520)
T 2z7x_B 398 -------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-P 437 (520)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-C
T ss_pred -------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc-c
Confidence 45788899999988877766554 7899999999999854 6
Q ss_pred ccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 554 STFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
..+..+++|++|++++|+++...+..+..+++|++|++++|+++|.++
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 666689999999999999985444458889999999999999998765
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-44 Score=408.10 Aligned_cols=382 Identities=21% Similarity=0.250 Sum_probs=300.6
Q ss_pred CcCcccCChhhhhcCCCCcEEEccCCcccc-----------------cCCccCC--CCCCCCEEEcccCccccccchHHh
Q 037315 179 NNFQGHIPVEIGDILPRLISFNISMNALDG-----------------SIPSSFG--NMNLLQILDLSNNQLTGEIPEHLA 239 (693)
Q Consensus 179 n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 239 (693)
|++++ +|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 67775 7877766 7888888888888887 3788877 888888888888888878886654
Q ss_pred hCCCCCcEEEccccc-ccc-ccCccCC-------CCCCCCeEeccCccccccCCc--CCcCCCCCCEEeccCCcccccCC
Q 037315 240 MGCVNLEFLALSNNS-LKG-HMFSRNF-------NLINLRWLQLEGNHFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIP 308 (693)
Q Consensus 240 ~~l~~L~~L~l~~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~ 308 (693)
++++|++|++++|+ +++ ..|..+. .+++|++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 58888888888887 776 5555443 4458999999999888 6777 7888889999999999888 666
Q ss_pred ccccCCCCCcEEEccCCccccCccccccCCCC-CCEEECcCCcCCCCCCCCCCC---CcccEEEccCcccccccCcc--c
Q 037315 309 RWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYS-LQILDISDNNISGSLPSCFHP---LSITQVHLSKNMLHGQLKGG--T 382 (693)
Q Consensus 309 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~--~ 382 (693)
.++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. .+|+.|++++|++.+.++.- .
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 7888889999999999888 67777888888 999999999887 55665542 34889999999887765531 1
Q ss_pred cc--CCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcc-cCC-------CCCCCEEEccCCcCcccCC
Q 037315 383 FF--NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCG-------LNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 383 ~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-------l~~L~~L~l~~n~~~~~~~ 452 (693)
+. .+++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|.. +.. +++|+.|+|++|+++ .+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 11 4468999999999999544445568999999999999999 44443 332 239999999999998 444
Q ss_pred CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 532 (693)
..+... .+++|+.|+|++|++.+ +|..+
T Consensus 745 ~~l~~~---------------------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 745 DDFRAT---------------------------------------------------TLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp GGGSTT---------------------------------------------------TCTTCCEEECCSSCCSS-CCCGG
T ss_pred HHhhhc---------------------------------------------------cCCCcCEEEeCCCCCCc-cchhh
Confidence 444310 16689999999999997 68889
Q ss_pred ccCCCCCeeeCCC------ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccc
Q 037315 533 GNLTRIQTLNLSH------NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQ 606 (693)
Q Consensus 533 ~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 606 (693)
..+++|+.|+|++ |++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 9999999999976 888889999999999999999999999 57887765 69999999999998776665555
Q ss_pred cCcCCcccccCccCCC--CCC
Q 037315 607 FATFNENSYEGNTFLC--GLP 625 (693)
Q Consensus 607 ~~~l~~~~~~~n~~~c--~~~ 625 (693)
........+.+|+..+ +|+
T Consensus 850 ~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHTTCCEEECCTTSEEESCG
T ss_pred cccchheeecCCCccccCCCC
Confidence 5555566677776554 665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-44 Score=405.54 Aligned_cols=481 Identities=17% Similarity=0.186 Sum_probs=254.8
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCCEEEC-CCCcCcCcCCcccccCCCCCcEEE-----cc----------CCccc
Q 037315 18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSL-SNNHFHIPISLEPLFNHSRLKIFY-----AD----------NNPIN 81 (693)
Q Consensus 18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~~~l~~L~~L~-----l~----------~n~~~ 81 (693)
.+++.|+|+++.+.|.+|+ .+++|++|++|+| ++|.+.+..+.........+.... .. ...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5789999999999989998 8999999999999 888887664422111100000000 00 00000
Q ss_pred ccccccc------C--CCCCCccccEEecCC-CCCCCCcCchhhcCCCCCCEEEccCcccccc-CchhhhhcCCCCCEEE
Q 037315 82 AKITKSH------T--LTTPKFQLASLSLSS-SYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE-FPNWLLENNTKLRQLS 151 (693)
Q Consensus 82 ~~~~~~~------~--~~~~~~~L~~L~L~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~ 151 (693)
......+ . .......++.+.+.. .+.+.+ +|..++.+++|++|++++|.+.+. ++..+ +.
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~ 471 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------ED 471 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SC
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---------cc
Confidence 0000000 0 000001222222211 123333 445555555555555555555441 00000 00
Q ss_pred ccCCcccccCCCCCC--CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCc-ccc-cCCccCC-------CCCCC
Q 037315 152 LVNDSLAGPFRLPIH--SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNA-LDG-SIPSSFG-------NMNLL 220 (693)
Q Consensus 152 l~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L 220 (693)
.+.+...+.+|..++ .+++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+. .+++|
T Consensus 472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 000000012444444 5555555555555555555544444 5555555555555 544 3443332 23366
Q ss_pred CEEEcccCccccccch-HHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCC-CCEEec
Q 037315 221 QILDLSNNQLTGEIPE-HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSS-LEGLYL 298 (693)
Q Consensus 221 ~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L 298 (693)
++|++++|.+. .+|. ..+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 66666666665 5555 12234666666666666665 333 5556666666666666666 55555666666 666666
Q ss_pred cCCcccccCCccccCCCC--CcEEEccCCccccCccccc---c--CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccC
Q 037315 299 NNNSLSGKIPRWLGNLTW--LIHIIMPKNHLEGPIPVEF---C--HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371 (693)
Q Consensus 299 ~~n~i~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 371 (693)
++|.++ .+|..+..++. |+.|++++|.+.+..|... . .+++|+.|++++|.+..
T Consensus 627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~------------------ 687 (876)
T 4ecn_A 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK------------------ 687 (876)
T ss_dssp CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS------------------
T ss_pred cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc------------------
Confidence 666665 45555554433 6666666666655433211 1 22355566665555541
Q ss_pred cccccccCcccccCCCCCcEEeCcCcccCCCcchh-hh-------CCCCCCEEEccCCcccccCCcccC--CCCCCCEEE
Q 037315 372 NMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW-ID-------GLSQLSHLILGNNNLEGEVPVQLC--GLNQLQLLD 441 (693)
Q Consensus 372 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ 441 (693)
+|...+..+++|+.|++++|.+. .+|.. +. ++++|++|+|++|+++ .+|..+. .+++|+.|+
T Consensus 688 ------lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 688 ------FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp ------CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred ------cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 12112233444444444444444 22221 11 1124555555555554 3344443 455555555
Q ss_pred ccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECC-
Q 037315 442 LSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS- 520 (693)
Q Consensus 442 l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls- 520 (693)
|++|++.+ +|..+.. +++|+.|+|+
T Consensus 760 Ls~N~L~~-lp~~l~~-----------------------------------------------------L~~L~~L~Ls~ 785 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLN-----------------------------------------------------SSQLKAFGIRH 785 (876)
T ss_dssp CCSSCCSS-CCCGGGG-----------------------------------------------------CTTCCEEECCC
T ss_pred eCCCCCCc-cchhhhc-----------------------------------------------------CCCCCEEECCC
Confidence 55555544 2333222 3345555554
Q ss_pred -----CCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCc
Q 037315 521 -----CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595 (693)
Q Consensus 521 -----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~ 595 (693)
+|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|||++|++....+..+.....+..+.+.+|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 47788889999999999999999999995 5566655 699999999999988777777776677777888887
Q ss_pred Ccc
Q 037315 596 LSG 598 (693)
Q Consensus 596 l~~ 598 (693)
+..
T Consensus 863 ~~~ 865 (876)
T 4ecn_A 863 TQD 865 (876)
T ss_dssp TSE
T ss_pred ccc
Confidence 653
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=394.86 Aligned_cols=437 Identities=20% Similarity=0.188 Sum_probs=336.6
Q ss_pred CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEE
Q 037315 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISF 199 (693)
Q Consensus 120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 199 (693)
++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 57777777777776554444 377888888888888888777777888888888888888887 56665 37788888
Q ss_pred EccCCcccc-cCCccCCCCCCCCEEEcccCccccccchHHhhCCCCC--cEEEcccccc--ccccCccCCCCC-CCCeEe
Q 037315 200 NISMNALDG-SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL--EFLALSNNSL--KGHMFSRNFNLI-NLRWLQ 273 (693)
Q Consensus 200 ~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~ 273 (693)
++++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..+. +...++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 888888876 357788888888888888888763 123346777 8888888888 666666655544 233567
Q ss_pred ccCccccccCC-cCCcCCCCCCEEeccCCc-------ccccCCccccCCCCCcEEEccCCccccCccccc---cCCCCCC
Q 037315 274 LEGNHFVGEIP-QSLSKCSSLEGLYLNNNS-------LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF---CHLYSLQ 342 (693)
Q Consensus 274 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~ 342 (693)
+++|.+.+..+ ..+..+++|+.|++++|. +.+.++ .++.+++|++|++++|.+.+..+..+ ...++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 77777665444 356678888888888886 554444 67788888888888887764322221 1246889
Q ss_pred EEECcCCcCCCCCCCCC------CCCcccEEEccCcccccccCcccccCC---CCCcEEeCcCcccCCCcchhhhCCCCC
Q 037315 343 ILDISDNNISGSLPSCF------HPLSITQVHLSKNMLHGQLKGGTFFNC---SSLVTLDLSYNLLNGSIPDWIDGLSQL 413 (693)
Q Consensus 343 ~L~l~~n~~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L 413 (693)
+|++++|++.+.+|..+ ....|+.+++++|.+ .+|...+..+ ++|+.|++++|.+.... .+..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 99999998887766654 367788888888887 4553244333 67999999999987432 23689999
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc--CCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccc
Q 037315 414 SHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL--IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI 491 (693)
Q Consensus 414 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (693)
++|++++|++++..|..+..+++|++|++++|++.+. .|..+..
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---------------------------------- 372 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ---------------------------------- 372 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence 9999999999988899999999999999999999753 2233332
Q ss_pred cceeeeecccceeeeccccccCcceEECCCCcccccCch-hhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCc
Q 037315 492 QEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP-QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570 (693)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 570 (693)
+++|++|++++|++.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|
T Consensus 373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 66899999999999984554 488999999999999999988777665 79999999999
Q ss_pred cccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 571 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
+++ .+|..+..+++|++|++++|+++...+..+..+.++..+++++||+.|+|+.
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999 7788888999999999999999954334478889999999999999999875
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.2e-42 Score=382.71 Aligned_cols=535 Identities=19% Similarity=0.174 Sum_probs=339.8
Q ss_pred CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315 1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI 80 (693)
Q Consensus 1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (693)
||+|+|+++.|.+|.++++|++|||++|+|+ .+++++|.++++|++|+|++|+++ .+|...|.++++|++|++++|.+
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcC
Confidence 6899999999999999999999999999998 787768999999999999999997 45667899999999999999998
Q ss_pred ccccccccCCCCCCccccEEecCCCCCCCC-cCchhhcCCCCCCEEEccCccccccCchhhhhcCCC----CCEEEccCC
Q 037315 81 NAKITKSHTLTTPKFQLASLSLSSSYGDGV-TFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTK----LRQLSLVND 155 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~ 155 (693)
++..+..+. ...+|++|++ +.+.+.. ..|..++.+++|++|++++|.+.+..+..+ +.+.+ ...++++.|
T Consensus 137 ~~l~~~~~~---~L~~L~~L~L-s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 137 ASLENFPIG---HLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp CCSTTCCCT---TCTTCCEEEC-CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTC
T ss_pred CCCChhhhh---cCcccCeecc-ccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccC
Confidence 764433222 2235666666 4444433 345555566666666666666554444332 22222 234555555
Q ss_pred cccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcc------cccCCccCCCCCCCCEEEcccCc
Q 037315 156 SLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNAL------DGSIPSSFGNMNLLQILDLSNNQ 229 (693)
Q Consensus 156 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~ 229 (693)
.+....+..+ ....++.+++++|.....++......++.++...+..+.. .......+..+..+...++..+.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 5543322222 2233445555555443223333333344444444332211 11111222222333333332221
Q ss_pred cccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCc
Q 037315 230 LTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309 (693)
Q Consensus 230 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 309 (693)
... ........+....+++.+.+.++.+.... .+.....++.|++.+|.+....+
T Consensus 291 ~~~----------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 291 LDY----------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCS----------------------CEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC-
T ss_pred hcc----------------------cccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc-
Confidence 110 00111223334445555555555444221 23344455555555555543222
Q ss_pred cccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCC---CCCCCcccEEEccCcccccccCcccccCC
Q 037315 310 WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS---CFHPLSITQVHLSKNMLHGQLKGGTFFNC 386 (693)
Q Consensus 310 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 386 (693)
..++.|+.+++..|..... .....+++|+.+++++|.+...... .....+++.+++..+....... .+..+
T Consensus 346 --~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l 419 (635)
T 4g8a_A 346 --LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGL 419 (635)
T ss_dssp --CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTC
T ss_pred --ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--ccccc
Confidence 2334455555555554322 2233455666666666655422111 1224556666666665533322 56778
Q ss_pred CCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-ccCCCCcccCcccccc
Q 037315 387 SSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH-GLIPPCFDNTKLHESY 464 (693)
Q Consensus 387 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~l~~~~ 464 (693)
++|+.++++.+......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|.+. +..|..|..
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------- 492 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------- 492 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-------
Confidence 899999998877654433 46788899999999999999888888999999999999999754 455666655
Q ss_pred CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315 465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS 544 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 544 (693)
+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 493 ----------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 493 ----------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred ----------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 5589999999999999999999999999999999
Q ss_pred CccCCccCcccccCCCCCCEEeCCCccccccCCcccccC-CCCCEEecCCCcCcccCCC-CccccCc-CCcccccCccCC
Q 037315 545 HNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL-KELAVFSVAYNNLSGEIPE-WKAQFAT-FNENSYEGNTFL 621 (693)
Q Consensus 545 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~-~~~~~~~-l~~~~~~~n~~~ 621 (693)
+|++++++|..|.++++|++|||++|++++..|..+..+ ++|++|++++|++.|.+.. |+.+|.. -...........
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~ 606 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 606 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCB
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCce
Confidence 999999999999999999999999999999999999988 6899999999999987652 2222211 111112234567
Q ss_pred CCCCCC
Q 037315 622 CGLPLP 627 (693)
Q Consensus 622 c~~~~~ 627 (693)
|..|..
T Consensus 607 C~~P~~ 612 (635)
T 4g8a_A 607 CATPSD 612 (635)
T ss_dssp BCSSTT
T ss_pred eCCchH
Confidence 876653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-42 Score=381.20 Aligned_cols=459 Identities=19% Similarity=0.182 Sum_probs=280.9
Q ss_pred CCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcc
Q 037315 17 MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ 96 (693)
Q Consensus 17 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 96 (693)
+...+++|+++|+++ .+|. .+. ++|++|++++|.+++ ++...+.++++|++|++++|.+++..+.
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------- 94 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFH---------- 94 (562)
T ss_dssp ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTT----------
T ss_pred cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHH----------
Confidence 445588999999988 7887 443 789999999998874 4446788888999999988887654333
Q ss_pred ccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEE
Q 037315 97 LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLD 175 (693)
Q Consensus 97 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 175 (693)
.+..+++|++|++++|.+. .+|.. .+++|++|++++|.+++. .+..++.+++|++|+
T Consensus 95 ------------------~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 95 ------------------VFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp ------------------TTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred ------------------HhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 2333444555555555444 23322 345555555555555442 223445555555555
Q ss_pred ccCCcCcccCChhhhhcCCCC--cEEEccCCcc--cccCCccCCCCC--CCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315 176 VSNNNFQGHIPVEIGDILPRL--ISFNISMNAL--DGSIPSSFGNMN--LLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249 (693)
Q Consensus 176 l~~n~~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 249 (693)
+++|++++. .+. .+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.++
T Consensus 153 L~~n~l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 153 LSAAKFRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EECSBCCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred cCCCccccC---chh-hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEec
Confidence 555555421 111 12333 5555555555 444444444433 11 3344555554444444444455555555
Q ss_pred ccccccc----cccCccCCCCCCCCeEeccCccccccC----CcCCcCCCCCCEEeccCCcccccCCccc-----cCCCC
Q 037315 250 LSNNSLK----GHMFSRNFNLINLRWLQLEGNHFVGEI----PQSLSKCSSLEGLYLNNNSLSGKIPRWL-----GNLTW 316 (693)
Q Consensus 250 l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~ 316 (693)
+++|... ......+..+++|+.++++++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 5554311 001122334455555555544433210 010 112355566666665555555444 34444
Q ss_pred CcEEEccCCccccCcc-cccc---CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEE
Q 037315 317 LIHIIMPKNHLEGPIP-VEFC---HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392 (693)
Q Consensus 317 L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 392 (693)
|+.+++..+.+ ..| ..+. ...+|+.|++++|.+.. .. ....+++|++|
T Consensus 307 L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-----------------------~~---~~~~l~~L~~L 358 (562)
T 3a79_B 307 LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-----------------------MV---CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-----------------------CC---CCSSCCCCCEE
T ss_pred eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-----------------------cc---CccCCCCceEE
Confidence 44444444443 112 1111 12456666666655431 11 12567889999
Q ss_pred eCcCcccCCCcchhhhCCCCCCEEEccCCcccccC--CcccCCCCCCCEEEccCCcCcccCC-CCcccCccccccCCCCC
Q 037315 393 DLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV--PVQLCGLNQLQLLDLSNNNLHGLIP-PCFDNTKLHESYNNSSS 469 (693)
Q Consensus 393 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~~~~~ 469 (693)
++++|.+++..|..+.++++|++|++++|++++.. |..+.++++|++|++++|++.+.+| ..+..
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------ 426 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------ 426 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------------
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------------
Confidence 99999998878888899999999999999998633 4668889999999999999987343 33433
Q ss_pred CchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCC
Q 037315 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT 549 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (693)
+++|++|++++|++++..|..+. ++|++|++++|+++
T Consensus 427 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 427 -----------------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred -----------------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 55899999999999876665544 79999999999999
Q ss_pred ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315 550 GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 550 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
.+ |..+.++++|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 464 ~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 464 SI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 65 55555999999999999999954444589999999999999999987763
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-41 Score=359.89 Aligned_cols=372 Identities=21% Similarity=0.214 Sum_probs=271.1
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcc
Q 037315 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251 (693)
Q Consensus 172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 251 (693)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666666665 5665 2 35778888888877777777778888888888888877656666556667888888888
Q ss_pred ccccccccCccCCCCCCCCeEeccCccccccCCc--CCcCCCCCCEEeccCCcccccCCcc-ccCCCCCcEEEccCCccc
Q 037315 252 NNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTWLIHIIMPKNHLE 328 (693)
Q Consensus 252 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~ 328 (693)
+|.+.+..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8888777777777788888888888877754333 3777788888888888877666655 677788888888888877
Q ss_pred cCccccccCC--CCCCEEECcCCcCCCCCCCC---------CCCCcccEEEccCcccccccCcccccC---CCCCcEEeC
Q 037315 329 GPIPVEFCHL--YSLQILDISDNNISGSLPSC---------FHPLSITQVHLSKNMLHGQLKGGTFFN---CSSLVTLDL 394 (693)
Q Consensus 329 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L 394 (693)
+..+..+..+ .+|+.|++++|.+.+..+.. +..++|+.|++++|++.+..+. .+.. .++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence 7766666654 57778888888776544332 2345677777777777655543 2222 367777777
Q ss_pred cCcccCCC----------cchhhhC--CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315 395 SYNLLNGS----------IPDWIDG--LSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE 462 (693)
Q Consensus 395 ~~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 462 (693)
++|...+. .+..+.+ .++|++|++++|.+++..+..+..+++|++|++++|++.+..|..|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 77754321 1112222 367888888888888777888888888888888888888777776655
Q ss_pred ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN 542 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 542 (693)
+++|++|++++|++.+..|..|..+++|++|+
T Consensus 322 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 322 ------------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ------------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 44788888888888877778888888888888
Q ss_pred CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315 543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
|++|+++++.|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 888888888788888888888888888888877777778888888888888888888774
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=370.89 Aligned_cols=435 Identities=20% Similarity=0.201 Sum_probs=321.7
Q ss_pred CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEE
Q 037315 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISF 199 (693)
Q Consensus 120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 199 (693)
+++++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 56777777877777554444 377888888888888888777777888888888888888887 66665 37888888
Q ss_pred EccCCccccc-CCccCCCCCCCCEEEcccCccccccchHHhhCCCCC--cEEEcccccc--ccccCccCCCCC--CCCeE
Q 037315 200 NISMNALDGS-IPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL--EFLALSNNSL--KGHMFSRNFNLI--NLRWL 272 (693)
Q Consensus 200 ~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~--~L~~L 272 (693)
++++|.+++. .|..|+++++|++|++++|.+.+ .. +..+++| ++|++++|.+ .+..+..+..+. .+ .+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HL 201 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EE
Confidence 8888888763 35778888888888888888763 21 2234555 8888888888 666666665543 22 45
Q ss_pred eccCccccccCC-cCCcCCCCCCEEeccCCccc----ccCCccccCCCCCcEEEccCCccccCc----cccccCCCCCCE
Q 037315 273 QLEGNHFVGEIP-QSLSKCSSLEGLYLNNNSLS----GKIPRWLGNLTWLIHIIMPKNHLEGPI----PVEFCHLYSLQI 343 (693)
Q Consensus 273 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~ 343 (693)
++++|.+.+..+ ..+..+++|+.+++++|... ......+..++.|+.+++.++.+.+.. +.. ...++|++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccE
Confidence 677777665444 24556778888888887421 012234667788888888777654321 111 23458899
Q ss_pred EECcCCcCCCCCCCCCC---CCcccEE---EccCcccccccCccccc---CCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315 344 LDISDNNISGSLPSCFH---PLSITQV---HLSKNMLHGQLKGGTFF---NCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414 (693)
Q Consensus 344 L~l~~n~~~~~~~~~~~---~~~L~~L---~l~~n~~~~~~~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 414 (693)
|++++|.+.+.+|..+. ..+++.| ++..+.+ .+|...+. ...+|++|++++|.+.... ....+++|+
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~ 356 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT 356 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence 99999988877666431 1344444 4444443 23321222 2267999999999986432 136889999
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC--CCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccc
Q 037315 415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI--PPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ 492 (693)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (693)
+|++++|++++..|..+.++++|++|++++|++++.. |..+..
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------------------------- 401 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN----------------------------------- 401 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----------------------------------
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----------------------------------
Confidence 9999999999888999999999999999999998643 233333
Q ss_pred ceeeeecccceeeeccccccCcceEECCCCcccccCc-hhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcc
Q 037315 493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP-PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571 (693)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 571 (693)
+++|++|++++|++.+.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+
T Consensus 402 ------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 402 ------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp ------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred ------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 5689999999999998444 4588999999999999999887666654 799999999999
Q ss_pred ccccCCcccccCCCCCEEecCCCcCcccCCCC-ccccCcCCcccccCccCCCCCCC
Q 037315 572 LNGKIPHQLVELKELAVFSVAYNNLSGEIPEW-KAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 572 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
++ .+|..+..+++|++|++++|++++ +|.. +..++.+..+++++||+.|+|+.
T Consensus 462 l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 462 IM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred Cc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 98 667767799999999999999995 5554 78889999999999999999875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-39 Score=349.73 Aligned_cols=373 Identities=23% Similarity=0.258 Sum_probs=319.4
Q ss_pred CcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccccc-ccCccCCCCCCCCeEec
Q 037315 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNFNLINLRWLQL 274 (693)
Q Consensus 196 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L 274 (693)
-+.++.+++.++ .+|. + .++|++|++++|.+.+..|. .+.++++|++|++++|.+.+ +.+..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346778888877 4555 3 37899999999999844444 44579999999999999874 45677999999999999
Q ss_pred cCccccccCCcCCcCCCCCCEEeccCCcccccCCcc--ccCCCCCcEEEccCCccccCcccc-ccCCCCCCEEECcCCcC
Q 037315 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW--LGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNI 351 (693)
Q Consensus 275 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~ 351 (693)
++|.+++..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998754444 899999999999999999887776 88999999999999999
Q ss_pred CCCCCCCCC---CCcccEEEccCcccccccCc-------ccccCCCCCcEEeCcCcccCCCcchhhhCC---CCCCEEEc
Q 037315 352 SGSLPSCFH---PLSITQVHLSKNMLHGQLKG-------GTFFNCSSLVTLDLSYNLLNGSIPDWIDGL---SQLSHLIL 418 (693)
Q Consensus 352 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L 418 (693)
.+..+..+. ...++.+++++|.+.+..+. ..+..+++|++|++++|.+++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 988776654 36899999999998654332 123456899999999999998888777654 89999999
Q ss_pred cCCcccccC----------CcccCC--CCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCc
Q 037315 419 GNNNLEGEV----------PVQLCG--LNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH 486 (693)
Q Consensus 419 ~~n~l~~~~----------~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (693)
++|...+.. +..+.. .++|++|++++|.+.+..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 998665322 112222 368999999999999988888766
Q ss_pred ccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEe
Q 037315 487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566 (693)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 566 (693)
+++|++|++++|++.+..|..|..+++|++|++++|.++++.|..|.++++|++|+
T Consensus 298 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 298 ------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp ------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 55899999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 567 LSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 567 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
|++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+||.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999987777778899999999999999999984
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-39 Score=340.85 Aligned_cols=267 Identities=24% Similarity=0.276 Sum_probs=147.7
Q ss_pred chhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCC
Q 037315 11 PWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTL 90 (693)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (693)
|+.+ +.++|++|++++|.+ +.+|. .++++++|++|++++|.+.+.+| ..++++++|+.+++..|..
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~---------- 70 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD---------- 70 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH----------
T ss_pred cccc-ccccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc----------
Confidence 3434 468899999999999 48988 78999999999999998887777 4677777766655554421
Q ss_pred CCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCC
Q 037315 91 TTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRH 170 (693)
Q Consensus 91 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 170 (693)
.++++|++++|.+.+ +|. -.++|++|++++|.+++ ++. ..++
T Consensus 71 -----------------------------~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~---~~~~ 112 (454)
T 1jl5_A 71 -----------------------------RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPE---LPQS 112 (454)
T ss_dssp -----------------------------HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCC---CCTT
T ss_pred -----------------------------cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-ccc---ccCC
Confidence 123344444444332 221 12456666666666654 222 2356
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250 (693)
Q Consensus 171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 250 (693)
|++|++++|+++ .++.. .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|.. ..+|++|++
T Consensus 113 L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L 180 (454)
T 1jl5_A 113 LKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAA 180 (454)
T ss_dssp CCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEEC
T ss_pred CcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEEC
Confidence 777777777766 33321 2577777777777775 55 4777777888888877776 45542 347777777
Q ss_pred cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC
Q 037315 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP 330 (693)
Q Consensus 251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 330 (693)
++|.+.+. + .+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|++.+.
T Consensus 181 ~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 181 GNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred cCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence 77777763 3 46777777777777777764 3332 246777777777766 444 366667777777777766642
Q ss_pred ccccccCCCCCCEEECcCCcCCC
Q 037315 331 IPVEFCHLYSLQILDISDNNISG 353 (693)
Q Consensus 331 ~~~~~~~l~~L~~L~l~~n~~~~ 353 (693)
|. .+++|+.|++++|++.+
T Consensus 253 -~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 253 -PD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp -CS---CCTTCCEEECCSSCCSC
T ss_pred -cc---cccccCEEECCCCcccc
Confidence 22 23566666666666653
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-37 Score=330.12 Aligned_cols=404 Identities=25% Similarity=0.290 Sum_probs=158.7
Q ss_pred ccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 037315 95 FQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLL 174 (693)
Q Consensus 95 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 174 (693)
..|++|++ +++.+ +.+|..++.+++|++|++++|.+.+.+|..+ +++++|+.+++.+|.. .++++|
T Consensus 11 ~~L~~L~l-~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 11 TFLQEPLR-HSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccchhhhc-ccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEE
Confidence 36677777 55555 5666666777777777777776666666554 4444431111111110 123444
Q ss_pred EccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccc
Q 037315 175 DVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254 (693)
Q Consensus 175 ~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 254 (693)
++++|.++ .+|. ..++|++|++++|.+++ +|.. .++|++|++++|.+. .++.. .++|++|++++|+
T Consensus 77 ~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 77 ELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQ 142 (454)
T ss_dssp ECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSC
T ss_pred EecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCC
Confidence 44444444 2222 12344444444444443 2321 244444555444444 22211 1344555555554
Q ss_pred cccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcccc
Q 037315 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334 (693)
Q Consensus 255 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 334 (693)
+.+ .| .+..+++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|..
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 444 22 24444455555555554442 22211 244555555554443 22 34444555555555554443 1111
Q ss_pred ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315 335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414 (693)
Q Consensus 335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 414 (693)
.++|++|++++|.+. .+|.....++|+.|++++|++.+ ++. .+++|+.|++++|.+++ +|.. .++|+
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred ---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCC
Confidence 134555555555444 23333334445555555554432 221 12455555555555553 2321 24555
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315 415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF 494 (693)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (693)
+|++++|++++. +. -.++|++|++++|++.+...
T Consensus 281 ~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~~------------------------------------------ 314 (454)
T 1jl5_A 281 FLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCD------------------------------------------ 314 (454)
T ss_dssp EEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECC------------------------------------------
T ss_pred EEECcCCccCcc-cC---cCCcCCEEECcCCcCCcccC------------------------------------------
Confidence 666666555532 11 01455566666655543210
Q ss_pred eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
.+++|++|++++|++++ +|.. +++|++|++++|+++++ |. .+++|++|++++|++++
T Consensus 315 ---------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 315 ---------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS
T ss_pred ---------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCc
Confidence 01245666666666554 3322 35666666666666643 22 34566666666666665
Q ss_pred --cCCcccccC-------------CCCCEEecCCCcCcc--cCCCCccccCcCCcccccCccCCCC
Q 037315 575 --KIPHQLVEL-------------KELAVFSVAYNNLSG--EIPEWKAQFATFNENSYEGNTFLCG 623 (693)
Q Consensus 575 --~~~~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~l~~~~~~~n~~~c~ 623 (693)
.+|..+..+ ++|++|++++|++++ .+|.+ +..+.+.+|...|.
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP 431 (454)
T ss_dssp CCCCCTTCCEEECCC---------------------------------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence 455555554 789999999999987 66654 44455566655554
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=335.86 Aligned_cols=347 Identities=19% Similarity=0.162 Sum_probs=231.5
Q ss_pred cEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccC
Q 037315 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEG 276 (693)
Q Consensus 197 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 276 (693)
+.++.+++.++ .+|..+. +.+++|++++|.++ .++...+.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45566666555 3444332 45666666666666 34333344566666666666666666666666666666666666
Q ss_pred ccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCC
Q 037315 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP 356 (693)
Q Consensus 277 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 356 (693)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 66665444455666666666666666665555566666666666666666665555556666666666666665542
Q ss_pred CCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCC
Q 037315 357 SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQ 436 (693)
Q Consensus 357 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (693)
++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..+.......+
T Consensus 167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 22235677788888888888887766677788888888888887776666666666668
Q ss_pred CCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcce
Q 037315 437 LQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516 (693)
Q Consensus 437 L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 516 (693)
|++|++++|++++..+..|.. +++|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence 888888888777554444433 457888
Q ss_pred EECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcC
Q 037315 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596 (693)
Q Consensus 517 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 596 (693)
|+|++|++.+..+..|..+++|++|+|++|+++++.|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88888888877777788888888888888888888788888888888888888888877777777888888888888888
Q ss_pred cccCCCCccccCcCCcccccCccCCCCCC
Q 037315 597 SGEIPEWKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 597 ~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
.|.++.. ..+.......+.++...|..|
T Consensus 333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred cCccchH-hHHhhhhccccCccCceeCCc
Confidence 7765421 112223334556666666544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=333.76 Aligned_cols=350 Identities=21% Similarity=0.198 Sum_probs=296.5
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250 (693)
Q Consensus 171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 250 (693)
-+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 357888888887 7887653 58999999999999888889999999999999999998 454444557999999999
Q ss_pred cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC
Q 037315 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP 330 (693)
Q Consensus 251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 330 (693)
++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999988878889999999999999999988888899999999999999999988888999999999999999999987
Q ss_pred ccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCC
Q 037315 331 IPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL 410 (693)
Q Consensus 331 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 410 (693)
.+..+..+++|+.|++++|.+.+. +...|..+++|+.|++++|...+.++......
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence 777889999999999999988632 22367788999999999998877777766667
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccc
Q 037315 411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKK 490 (693)
Q Consensus 411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (693)
.+|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------- 270 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------------------------------- 270 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence 79999999999999666677899999999999999999887777755
Q ss_pred ccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCc
Q 037315 491 IQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570 (693)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 570 (693)
+++|++|+|++|++.+..|..|..+++|++|+|++|+++++.+..|..+++|++|++++|
T Consensus 271 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 271 --------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp --------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred --------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 558999999999999999999999999999999999999998889999999999999999
Q ss_pred cccccCCcccccCCCCCEEecCCCcCcccCCCC
Q 037315 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603 (693)
Q Consensus 571 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 603 (693)
++.+..+. ..-......+.+.++...|..|..
T Consensus 331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp CEECSGGG-HHHHTTTTSSCCTTCCCBEEESGG
T ss_pred CccCccch-HhHHhhhhccccCccCceeCCchH
Confidence 99754321 111233444566777777766653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.7e-36 Score=321.61 Aligned_cols=347 Identities=27% Similarity=0.392 Sum_probs=247.9
Q ss_pred cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCE
Q 037315 143 NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQI 222 (693)
Q Consensus 143 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 222 (693)
.++++++|++.++.+... ..+..+++|++|++++|.++ .++. +. .+++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346777777777776642 23566777777777777776 3443 33 36777777777777764433 777777777
Q ss_pred EEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCc
Q 037315 223 LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302 (693)
Q Consensus 223 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 302 (693)
|++++|.+. .++. +..+++|++|++++|.+.+.. .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 777777776 4443 345777777777777766532 36667777777775 333322 226666777777777776
Q ss_pred ccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 037315 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382 (693)
Q Consensus 303 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 382 (693)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+ + ..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------------~--~~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------------------------I--GT 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------C--GG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc------------------------c--hh
Confidence 6532 235666666666666666665433 4556666666666665542 1 15
Q ss_pred ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE 462 (693)
Q Consensus 383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 462 (693)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----- 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----- 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence 6678889999999998886544 8888999999999999886544 7888999999999998876543 222
Q ss_pred ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN 542 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 542 (693)
+++|+.|++++|++.+..| +..+++|++|+
T Consensus 308 ------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 308 ------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp ------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred ------------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 5689999999999887655 78899999999
Q ss_pred CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCccc
Q 037315 543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGE 599 (693)
Q Consensus 543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 599 (693)
+++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999876 578889999999999999987776 78899999999999999873
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-35 Score=317.27 Aligned_cols=347 Identities=27% Similarity=0.373 Sum_probs=286.3
Q ss_pred CCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCc
Q 037315 118 YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197 (693)
Q Consensus 118 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 197 (693)
.++++++|++.++.+.. +|. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +. .+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence 45789999999998864 453 3789999999999999987544 889999999999999998 4444 44 489999
Q ss_pred EEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCc
Q 037315 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN 277 (693)
Q Consensus 198 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 277 (693)
+|++++|.+++..+ +.++++|++|++++|.+. .++. +..+++|++|+++ +.+.+.. .+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999986533 899999999999999998 5654 4569999999997 4555433 3889999999999999
Q ss_pred cccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCC
Q 037315 278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357 (693)
Q Consensus 278 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 357 (693)
.+.+. ..+..+++|+.|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~-- 259 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA-- 259 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--
Confidence 98854 358899999999999999986655 77899999999999999864 46788999999999999886321
Q ss_pred CCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCC
Q 037315 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQL 437 (693)
Q Consensus 358 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 437 (693)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 260 ------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 260 ------------------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp ------------------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ------------------------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 25677888888888888885543 7788889999999998886544 7788899
Q ss_pred CEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceE
Q 037315 438 QLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517 (693)
Q Consensus 438 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 517 (693)
+.|++++|++.+..| +.. +++|++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L 336 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL 336 (466)
T ss_dssp SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence 999999998876654 222 5689999
Q ss_pred ECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc
Q 037315 518 DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575 (693)
Q Consensus 518 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 575 (693)
++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999998865 468889999999999999998876 88899999999999999863
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-35 Score=309.83 Aligned_cols=334 Identities=22% Similarity=0.201 Sum_probs=195.9
Q ss_pred CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEe
Q 037315 218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY 297 (693)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 297 (693)
+++++|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44445555554444 44444444455555555555555544444455555555555555555544444445555555555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 037315 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ 377 (693)
Q Consensus 298 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 377 (693)
+++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.. ....++|+.+++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence 5555554333333444555555555555555444444555555555555555544321 1123444555555544422
Q ss_pred cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315 378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457 (693)
Q Consensus 378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 457 (693)
+...++|++|++++|.+... +. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..|..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 22335677777777776633 22 2246677777777777643 45667777777777777777666655544
Q ss_pred CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR 537 (693)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 537 (693)
+++|++|++++|++++ +|..+..+++
T Consensus 271 -----------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~ 296 (390)
T 3o6n_A 271 -----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPT 296 (390)
T ss_dssp -----------------------------------------------------CSSCCEEECCSSCCCE-EECSSSCCTT
T ss_pred -----------------------------------------------------cccCCEEECCCCcCcc-cCcccCCCCC
Confidence 4467777777777764 3555567788
Q ss_pred CCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccC
Q 037315 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEG 617 (693)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~ 617 (693)
|++|++++|+++++ |..+..+++|++|++++|+++.. + +..+++|+.|++++|++.|.... ..+..+....+.+
T Consensus 297 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~ 370 (390)
T 3o6n_A 297 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDD 370 (390)
T ss_dssp CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCC
T ss_pred CCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccc
Confidence 88888888888754 55677788888888888888754 2 56778888888888888875332 3345556666777
Q ss_pred ccCCCCCC
Q 037315 618 NTFLCGLP 625 (693)
Q Consensus 618 n~~~c~~~ 625 (693)
++..|.++
T Consensus 371 ~~~~c~~~ 378 (390)
T 3o6n_A 371 ADQHCKID 378 (390)
T ss_dssp CCSCCCTT
T ss_pred cCceeccc
Confidence 88777754
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-36 Score=317.36 Aligned_cols=361 Identities=17% Similarity=0.120 Sum_probs=223.7
Q ss_pred CchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhh
Q 037315 112 FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191 (693)
Q Consensus 112 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 191 (693)
.+..++.+++|++|++++|.+.+. | . ++.+++|++|++++|.+++. +++.+++|++|++++|++++ ++ +.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~- 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT- 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-
Confidence 344556667777777777777653 4 2 36677777777777777653 26667777777777777763 33 33
Q ss_pred cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCe
Q 037315 192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271 (693)
Q Consensus 192 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 271 (693)
.+++|++|++++|.+++. + ++++++|++|++++|+++ .++ ...+++|++|++++|...+.. .+..+++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 266777777777776643 2 666777777777777766 343 234667777777766433322 3556666777
Q ss_pred EeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcC
Q 037315 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI 351 (693)
Q Consensus 272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 351 (693)
|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++.+ +| +..+++|+.|++++|++
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 7777776664 23 55666666777766666643 25566666666666666665 23 55666666666666666
Q ss_pred CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCccc
Q 037315 352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL 431 (693)
Q Consensus 352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (693)
.+.. ...+++|+.|++++| +|+.|++++|++.+.+| +
T Consensus 246 ~~~~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 246 TELD---------------------------VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp SCCC---------------------------CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--C
T ss_pred CCcC---------------------------HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--c
Confidence 5432 223344444444433 23334444444443333 3
Q ss_pred CCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccc
Q 037315 432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL 511 (693)
Q Consensus 432 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 511 (693)
..+++|+.|++++|+..+.+|......+.. .-...
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L---------------------------------------------~l~~~ 317 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITEL---------------------------------------------DLSQN 317 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCC---------------------------------------------CCTTC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEe---------------------------------------------chhhc
Confidence 344555555555555444333221111100 00013
Q ss_pred cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591 (693)
Q Consensus 512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 591 (693)
++|++|++++|++++. .++.+++|+.|++++|+++++ +.|+.|++++|.+.+. ..+..|+.+++
T Consensus 318 ~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCcccc
Confidence 4789999999999875 388899999999999999863 5677788999999865 34556788899
Q ss_pred CCCcCcccCCCCc
Q 037315 592 AYNNLSGEIPEWK 604 (693)
Q Consensus 592 ~~N~l~~~~p~~~ 604 (693)
++|+++|.+|..+
T Consensus 382 ~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 382 TNNSLTIAVSPDL 394 (457)
T ss_dssp BTTBEEEECCTTC
T ss_pred ccCcEEEEcChhH
Confidence 9999999998743
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.4e-35 Score=309.31 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=48.5
Q ss_pred CccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315 6 LRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN 81 (693)
Q Consensus 6 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (693)
..+..+..++++++|++||+++|.++ .+| .++.+++|++|++++|++++. + +..+++|++|++++|.++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred cCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCc
Confidence 34444556777788888888888887 555 377788888888888877642 2 666777777777777654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-34 Score=318.62 Aligned_cols=334 Identities=22% Similarity=0.203 Sum_probs=202.9
Q ss_pred CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEe
Q 037315 218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY 297 (693)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 297 (693)
++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34444444444444 44444443444444444444444444444444444455555544444444444444444555555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 037315 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ 377 (693)
Q Consensus 298 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 377 (693)
+++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+.. ...+++|+.+++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-
Confidence 5555444333333444445555555555444444444444555555555555444321 1123445555555554432
Q ss_pred cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315 378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457 (693)
Q Consensus 378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 457 (693)
+...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 23345677777777777643222 2 3578888888888774 356777888888888888887777766654
Q ss_pred CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR 537 (693)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 537 (693)
+++|+.|+|++|.+++ +|..+..+++
T Consensus 277 -----------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 302 (597)
T 3oja_B 277 -----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPT 302 (597)
T ss_dssp -----------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTT
T ss_pred -----------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCC
Confidence 4478888888888875 4566677889
Q ss_pred CCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccC
Q 037315 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEG 617 (693)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~ 617 (693)
|++|+|++|.++++ |..+..+++|+.|+|++|++.+.. +..+++|+.|++++|++.|.... ..+..+....+.+
T Consensus 303 L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~ 376 (597)
T 3oja_B 303 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDD 376 (597)
T ss_dssp CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCC
T ss_pred CcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhcccc
Confidence 99999999998854 667788899999999999987553 56778999999999999886433 3455666667888
Q ss_pred ccCCCCCC
Q 037315 618 NTFLCGLP 625 (693)
Q Consensus 618 n~~~c~~~ 625 (693)
++..|+.+
T Consensus 377 ~~~~C~~~ 384 (597)
T 3oja_B 377 ADQHCKID 384 (597)
T ss_dssp CCCCCCTT
T ss_pred ccccCCcc
Confidence 88888764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=294.91 Aligned_cols=334 Identities=23% Similarity=0.266 Sum_probs=245.3
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE
Q 037315 168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247 (693)
Q Consensus 168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 247 (693)
+++++.|+++++.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 467788888888877 677766666788888888888888777778888888888888888887 455454456788888
Q ss_pred EEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcc
Q 037315 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327 (693)
Q Consensus 248 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 327 (693)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888776655667778888888888877766666777777888888887777643 244566667777776665
Q ss_pred ccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh
Q 037315 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407 (693)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 407 (693)
.+ +...++|+.|++++|.+. .. +. ...++|+.|++++|.+++. .++
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~-----------------------~~-~~---~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSIN-----------------------VV-RG---PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCC-----------------------EE-EC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred cc-----cCCCCcceEEECCCCeee-----------------------ec-cc---cccccccEEECCCCCCccc--HHH
Confidence 43 223345666666666554 22 21 2247899999999998854 578
Q ss_pred hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcc
Q 037315 408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV 487 (693)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (693)
..+++|++|++++|.+++..|..+..+++|++|++++|++++..+ .+..
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~------------------------------ 293 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQP------------------------------ 293 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSC------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCC------------------------------
Confidence 889999999999999998888889999999999999998876432 2211
Q ss_pred cccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeC
Q 037315 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567 (693)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 567 (693)
+++|++|++++|++. .+|..+..+++|++|++++|.++.+. +..+++|+.|++
T Consensus 294 -----------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 294 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred -----------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence 568999999999998 56777889999999999999998773 777899999999
Q ss_pred CCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315 568 SYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI 600 (693)
Q Consensus 568 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 600 (693)
++|++.+..... -+..+....+..++..|..
T Consensus 347 ~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 347 SHNDWDCNSLRA--LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCT
T ss_pred CCCCccchhHHH--HHHHHHhhcccccCceecc
Confidence 999998643222 2233333344555555443
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.4e-33 Score=285.80 Aligned_cols=304 Identities=23% Similarity=0.326 Sum_probs=221.5
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272 (693)
Q Consensus 193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 272 (693)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5788888888888764 33 4777888888888888887 5555 44688888888888887764 357778888888
Q ss_pred eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352 (693)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 352 (693)
++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 8888887743 32 677788888888887554333 336777777777777777765433 667777777777777665
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432 (693)
Q Consensus 353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (693)
+. + .+..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DI------------------------S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cc------------------------c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 22 1 25667788888888888775433 7778888888888888875433 77
Q ss_pred CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512 (693)
Q Consensus 433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (693)
.+++|++|++++|.+++. +.+.. ++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence 788888888888877653 12221 55
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|++|++++|++.+. ..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..| +..+++|++|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 788888888888754 457788888888888888888878888888888888888888886655 7788888888888
Q ss_pred CCcCc
Q 037315 593 YNNLS 597 (693)
Q Consensus 593 ~N~l~ 597 (693)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88875
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.8e-34 Score=287.87 Aligned_cols=260 Identities=35% Similarity=0.573 Sum_probs=221.1
Q ss_pred CCCCEEeccCCcccc--cCCccccCCCCCcEEEccC-CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEE
Q 037315 291 SSLEGLYLNNNSLSG--KIPRWLGNLTWLIHIIMPK-NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQV 367 (693)
Q Consensus 291 ~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 367 (693)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 356677777777766 5666777777777777774 67776777777777777777777777653
Q ss_pred EccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCC-CCCEEEccCCc
Q 037315 368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN-QLQLLDLSNNN 446 (693)
Q Consensus 368 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 446 (693)
.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus 116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 3333 677788899999999998888888899999999999999999988898899888 99999999999
Q ss_pred CcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc
Q 037315 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG 526 (693)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 526 (693)
+.+..|..+.. +. |++|++++|++.+
T Consensus 186 l~~~~~~~~~~-----------------------------------------------------l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFAN-----------------------------------------------------LN-LAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGG-----------------------------------------------------CC-CSEEECCSSEEEE
T ss_pred eeccCChHHhC-----------------------------------------------------Cc-ccEEECcCCcccC
Confidence 98888877654 33 8999999999999
Q ss_pred cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccc
Q 037315 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQ 606 (693)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 606 (693)
..|..|..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 9999999999999999999999977665 888999999999999999999999999999999999999999999997 88
Q ss_pred cCcCCcccccCccCCCCCCCCCCC
Q 037315 607 FATFNENSYEGNTFLCGLPLPICR 630 (693)
Q Consensus 607 ~~~l~~~~~~~n~~~c~~~~~~c~ 630 (693)
++++..+++.+||++|+.|...|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999998877773
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=283.01 Aligned_cols=305 Identities=26% Similarity=0.361 Sum_probs=215.1
Q ss_pred CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCc
Q 037315 167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLE 246 (693)
Q Consensus 167 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 246 (693)
.+++|++|+++++.+. .++. +. .+++|++|++++|.+++..+ +.++++|++|++++|.+. .++. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 3455555555555554 3332 22 25666666666666653322 666666666666666665 4432 33566777
Q ss_pred EEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc
Q 037315 247 FLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326 (693)
Q Consensus 247 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 326 (693)
+|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777776665433 566777777777777554333 336777777778887777764433 6777888888888887
Q ss_pred cccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406 (693)
Q Consensus 327 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 406 (693)
+.+..+ +..+++|+.+++++|.+.+.. .+..+++|++|++++|.+++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDIT--------------------------PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCc--------------------------hhhcCCcCCEEEccCCccCCCcc--
Confidence 775433 777888888888888776321 25667888888888888875433
Q ss_pred hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCc
Q 037315 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH 486 (693)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (693)
+..+++|++|++++|.+++. ..+..+++|++|++++|++.+. ..+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~----------------------------- 285 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN----------------------------- 285 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG-----------------------------
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC-----------------------------
Confidence 78888889999988888853 4688889999999999988764 12222
Q ss_pred ccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEe
Q 037315 487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566 (693)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 566 (693)
+++|++|++++|++.+..+..+..+++|++|++++|.+++..| +..+++|++|+
T Consensus 286 ------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 286 ------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp ------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred ------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 5689999999999998888999999999999999999998866 88899999999
Q ss_pred CCCcccc
Q 037315 567 LSYNKLN 573 (693)
Q Consensus 567 Ls~N~l~ 573 (693)
+++|+++
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-32 Score=300.18 Aligned_cols=311 Identities=23% Similarity=0.268 Sum_probs=242.9
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE
Q 037315 168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247 (693)
Q Consensus 168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 247 (693)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.+. .++...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 467788888888887 677776666888888888888888877778888888888888888887 555555556888888
Q ss_pred EEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcc
Q 037315 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327 (693)
Q Consensus 248 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 327 (693)
|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++. .++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 88888888877666677888888888888888877777788888888888888877653 244566777777777766
Q ss_pred ccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh
Q 037315 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407 (693)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 407 (693)
.+ +...++|+.|++++|.+... .+ ...++|+.|++++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~-----------------------~~----~~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVV-----------------------RG----PVNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEE-----------------------EC----SCCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCccccc-----------------------cc----ccCCCCCEEECCCCCCCC--Chhh
Confidence 53 23345667777776665421 11 112688999999998885 3678
Q ss_pred hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcc
Q 037315 408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV 487 (693)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (693)
..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+ .+..
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~------------------------------ 299 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQP------------------------------ 299 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSC------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-cccc------------------------------
Confidence 889999999999999998888899999999999999999876432 2221
Q ss_pred cccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeC
Q 037315 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567 (693)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 567 (693)
+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++++. +..+++|+.|++
T Consensus 300 -----------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 300 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred -----------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 568999999999998 56778899999999999999998773 677889999999
Q ss_pred CCcccccc
Q 037315 568 SYNKLNGK 575 (693)
Q Consensus 568 s~N~l~~~ 575 (693)
++|++.+.
T Consensus 353 ~~N~~~~~ 360 (597)
T 3oja_B 353 SHNDWDCN 360 (597)
T ss_dssp CSSCEEHH
T ss_pred eCCCCCCh
Confidence 99999754
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.8e-31 Score=269.44 Aligned_cols=291 Identities=23% Similarity=0.308 Sum_probs=195.8
Q ss_pred CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315 219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298 (693)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 298 (693)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666666665 555433 246666777777666666556666777777777777776666666777777777777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL 378 (693)
Q Consensus 299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 378 (693)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... + .
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G-I 162 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G-B
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C-c
Confidence 777766 3343332 5677777777777766666677777777777777766421 1 1
Q ss_pred CcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315 379 KGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT 458 (693)
Q Consensus 379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 458 (693)
....+..+++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 238 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN- 238 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-
Confidence 11256667777777777777763 343332 67777888887777776777777788888888888777666655544
Q ss_pred ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315 459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI 538 (693)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 538 (693)
+++|++|++++|+++ .+|..+..+++|
T Consensus 239 ----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 239 ----------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp ----------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred ----------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 446778888888777 566677788888
Q ss_pred CeeeCCCccCCccCcccccCC------CCCCEEeCCCccccc--cCCcccccCCCCCEEecCCCc
Q 037315 539 QTLNLSHNNLTGLIPSTFSNL------KQIESLDLSYNKLNG--KIPHQLVELKELAVFSVAYNN 595 (693)
Q Consensus 539 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~ 595 (693)
++|++++|+++++.+..|... ++|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888887777666543 677888888888763 556677778888888888774
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-31 Score=271.80 Aligned_cols=290 Identities=22% Similarity=0.293 Sum_probs=194.1
Q ss_pred CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315 219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298 (693)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 298 (693)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666666 566544 356777777777777666666777777777777777777666666777777777777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL 378 (693)
Q Consensus 299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 378 (693)
++|.++ .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.+... + .
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------G-F 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------G-S
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------C-C
Confidence 777766 3343333 6677777777777666555677777777777777766421 0 1
Q ss_pred CcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315 379 KGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT 458 (693)
Q Consensus 379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 458 (693)
....+..+ +|+.|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF- 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence 11134444 66677777776664 333332 56777777777777666667777777777777777777666655544
Q ss_pred ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315 459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI 538 (693)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 538 (693)
+++|++|++++|+++ .+|..+..+++|
T Consensus 240 ----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 240 ----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 446777778777777 566677788888
Q ss_pred CeeeCCCccCCccCcccccCC------CCCCEEeCCCcccc--ccCCcccccCCCCCEEecCCCc
Q 037315 539 QTLNLSHNNLTGLIPSTFSNL------KQIESLDLSYNKLN--GKIPHQLVELKELAVFSVAYNN 595 (693)
Q Consensus 539 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~ 595 (693)
++|++++|+++++.+..|.+. .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888887777666553 56788888888876 5667777888888888888774
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=9.7e-31 Score=267.31 Aligned_cols=253 Identities=25% Similarity=0.299 Sum_probs=148.4
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249 (693)
Q Consensus 170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 249 (693)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 5666677666665 5555442 46666666666666555556666666666666666665 33222233455666666
Q ss_pred ccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcccc
Q 037315 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG 329 (693)
Q Consensus 250 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 329 (693)
+++|.+....+. +. ++|++|++++|.+.+..+..+..+++|+.|++++|.++. .+
T Consensus 109 L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 109 ISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp CCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence 666555543222 11 455555555555554333344445555555555554431 11
Q ss_pred CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhC
Q 037315 330 PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDG 409 (693)
Q Consensus 330 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 409 (693)
..+..+..+ +|+.|++++|++.+. |..+ ..+|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+.++..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCcc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 333444444 555555555555532 2211 13455555555555333332 6777788888888888888777777888
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315 410 LSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457 (693)
Q Consensus 410 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 457 (693)
+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 888888888888887 56666778888888888888887776666654
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.1e-34 Score=311.52 Aligned_cols=280 Identities=21% Similarity=0.162 Sum_probs=160.9
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccc----cCCccCCCCCCCCEEEcccCccccccchHHhhCCC-
Q 037315 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDG----SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV- 243 (693)
Q Consensus 169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 243 (693)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777643333334456778888888777763 23455667778888888887776444545554455
Q ss_pred ---CCcEEEcccccccc----ccCccCCCCCCCCeEeccCccccccCCcCC-----cCCCCCCEEeccCCcccccC----
Q 037315 244 ---NLEFLALSNNSLKG----HMFSRNFNLINLRWLQLEGNHFVGEIPQSL-----SKCSSLEGLYLNNNSLSGKI---- 307 (693)
Q Consensus 244 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~---- 307 (693)
+|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888887774 335666777788888888777764322222 22456788888887776533
Q ss_pred CccccCCCCCcEEEccCCccccCcccccc-----CCCCCCEEECcCCcCCCCC----CCCC-CCCcccEEEccCcccccc
Q 037315 308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFC-----HLYSLQILDISDNNISGSL----PSCF-HPLSITQVHLSKNMLHGQ 377 (693)
Q Consensus 308 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~ 377 (693)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+.. +..+ ..++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44455667777777777776644333332 2557777777777765421 1111 134444555555444322
Q ss_pred c----CcccccCCCCCcEEeCcCcccCCC----cchhhhCCCCCCEEEccCCcccccCCcccC-----CCCCCCEEEccC
Q 037315 378 L----KGGTFFNCSSLVTLDLSYNLLNGS----IPDWIDGLSQLSHLILGNNNLEGEVPVQLC-----GLNQLQLLDLSN 444 (693)
Q Consensus 378 ~----~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~ 444 (693)
. ....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 111222355566666666655532 344445555666666666655433222221 124555555555
Q ss_pred CcCc
Q 037315 445 NNLH 448 (693)
Q Consensus 445 n~~~ 448 (693)
|.++
T Consensus 323 n~l~ 326 (461)
T 1z7x_W 323 CSFT 326 (461)
T ss_dssp SCCB
T ss_pred CCCc
Confidence 5544
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-34 Score=310.58 Aligned_cols=387 Identities=19% Similarity=0.095 Sum_probs=253.7
Q ss_pred CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhhhcCC-
Q 037315 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP- 194 (693)
Q Consensus 120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~- 194 (693)
++|++|+++++.+.+.....++..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35677777777776554444457788888888888887643 3345666788888888888887555555665565
Q ss_pred ---CCcEEEccCCcccc----cCCccCCCCCCCCEEEcccCccccccchHHhh----CCCCCcEEEcccccccccc----
Q 037315 195 ---RLISFNISMNALDG----SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM----GCVNLEFLALSNNSLKGHM---- 259 (693)
Q Consensus 195 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~---- 259 (693)
+|++|++++|.++. .++..+.++++|++|++++|.+.+..+..+.. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 44777888999999999999887443433332 2457888888888887643
Q ss_pred CccCCCCCCCCeEeccCccccccCCcCCc-----CCCCCCEEeccCCccccc----CCccccCCCCCcEEEccCCccccC
Q 037315 260 FSRNFNLINLRWLQLEGNHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTWLIHIIMPKNHLEGP 330 (693)
Q Consensus 260 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 330 (693)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455667888888888877654333332 245788888888877653 355566677777888877776543
Q ss_pred c-----cccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcch
Q 037315 331 I-----PVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPD 405 (693)
Q Consensus 331 ~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 405 (693)
. +..+..+++|++|++++|.+++... ..++. .+..+++|++|++++|.+++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence 2 1222346777777777776652100 01222 456688899999999988654444
Q ss_pred hhhC-----CCCCCEEEccCCccccc----CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhH
Q 037315 406 WIDG-----LSQLSHLILGNNNLEGE----VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI 476 (693)
Q Consensus 406 ~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (693)
.+.. .++|++|++++|.+++. .+..+..+++|++|++++|++.+..+..+...-
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------- 365 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL----------------- 365 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-----------------
Confidence 4432 36899999999998865 345566778888888888877643322221100
Q ss_pred hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc----cCchhhccCCCCCeeeCCCccCCccC
Q 037315 477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG----HIPPQVGNLTRIQTLNLSHNNLTGLI 552 (693)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~ 552 (693)
....++|++|++++|++++ .+|..+..+++|++|++++|++++..
T Consensus 366 -------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 366 -------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp -------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred -------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 0003467777888777775 56666777777777777777776542
Q ss_pred ccccc-----CCCCCCEEeCCCccccc
Q 037315 553 PSTFS-----NLKQIESLDLSYNKLNG 574 (693)
Q Consensus 553 ~~~~~-----~l~~L~~L~Ls~N~l~~ 574 (693)
...+. ...+|+.|++.++....
T Consensus 415 ~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 415 ILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHhccCCcchhheeecccccCH
Confidence 21111 23356666666665543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.5e-32 Score=271.97 Aligned_cols=252 Identities=30% Similarity=0.462 Sum_probs=167.2
Q ss_pred CCCCeEeccCccccc--cCCcCCcCCCCCCEEeccC-CcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCE
Q 037315 267 INLRWLQLEGNHFVG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI 343 (693)
Q Consensus 267 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 343 (693)
.++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345566666666655 5555566666666666663 5665556666666666666666666666556666666666666
Q ss_pred EECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCC-CCCEEEccCCc
Q 037315 344 LDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLS-QLSHLILGNNN 422 (693)
Q Consensus 344 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 422 (693)
|++++|.+.+..|. .+..+++|++|++++|.+++.+|..+..++ +|++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCCh------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 66666666533222 445556666666666666655666666665 66666666666
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccc
Q 037315 423 LEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502 (693)
Q Consensus 423 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (693)
+++..|..+..++ |++|++++|++.+..|..|..
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------- 219 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--------------------------------------------- 219 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------
Confidence 6666666666665 677777777666655555543
Q ss_pred eeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccccc
Q 037315 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE 582 (693)
Q Consensus 503 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 582 (693)
+++|++|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus 220 --------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 220 --------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp --------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred --------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 34677777777777655444 677788888888888888777888888888888888888888777776 77
Q ss_pred CCCCCEEecCCCcCcc
Q 037315 583 LKELAVFSVAYNNLSG 598 (693)
Q Consensus 583 l~~L~~L~l~~N~l~~ 598 (693)
+++|+.+++++|+..+
T Consensus 290 l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGSCGGGTCSSSEEE
T ss_pred ccccChHHhcCCCCcc
Confidence 7888888888887444
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.5e-30 Score=262.26 Aligned_cols=253 Identities=26% Similarity=0.354 Sum_probs=148.8
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEE
Q 037315 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248 (693)
Q Consensus 169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 248 (693)
.+++.++++++.++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..+ ..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence 36777777777766 5555432 466677777776665555566666666666666666652223332 345555566
Q ss_pred EccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc
Q 037315 249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328 (693)
Q Consensus 249 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 328 (693)
++++|.++.. |..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 106 ~Ls~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 106 YLSKNQLKEL-------------------------PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ECCSSCCSBC-------------------------CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCcc-------------------------Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 5555555532 22221 34444555554444444444445555555555555443
Q ss_pred c--CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315 329 G--PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406 (693)
Q Consensus 329 ~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 406 (693)
. ..+..+..+++|+.|++++|.+... +... .++|+.|++++|++.+..+. .+..+++|++|++++|.+++..+..
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence 2 3344555666666666666665532 2211 14455555555555443333 6677777777888777777666667
Q ss_pred hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457 (693)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 457 (693)
+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 777777778888777777 56666777777777777777777766666543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=264.55 Aligned_cols=252 Identities=22% Similarity=0.249 Sum_probs=205.4
Q ss_pred CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347 (693)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 347 (693)
..+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567787777777 5565554 578888888888887777888888888888888888887777788888888888888
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC-ccccc
Q 037315 348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN-NLEGE 426 (693)
Q Consensus 348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 426 (693)
+|++.+ ++...|..+++|++|++++|.+....+..|..+++|++|++++| .+...
T Consensus 121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 887763 23336778899999999999998777778889999999999984 45545
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
.+..|.++++|++|++++|.++.... +..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~------------------------------------------------- 205 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREIPN--LTP------------------------------------------------- 205 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSCCC--CTT-------------------------------------------------
T ss_pred CcchhhcccccCeecCCCCcCccccc--cCC-------------------------------------------------
Confidence 55678889999999999998875421 222
Q ss_pred ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCC
Q 037315 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 586 (693)
+++|++|+|++|++++..|..|..+++|++|++++|+++++.+..|.++++|++|+|++|++++..+..+..+++|
T Consensus 206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 5578999999999998888889999999999999999998888889999999999999999998888888888999
Q ss_pred CEEecCCCcCcccCC
Q 037315 587 AVFSVAYNNLSGEIP 601 (693)
Q Consensus 587 ~~L~l~~N~l~~~~p 601 (693)
+.|++++|++.|.+.
T Consensus 282 ~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEEECCSSCEECSST
T ss_pred CEEEcCCCCccCCCC
Confidence 999999999887654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.5e-29 Score=264.09 Aligned_cols=252 Identities=21% Similarity=0.213 Sum_probs=204.1
Q ss_pred CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347 (693)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 347 (693)
..+.++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3566777777776 4555443 578888888888887777778888888888888888877777777888888888888
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC-ccccc
Q 037315 348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN-NLEGE 426 (693)
Q Consensus 348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 426 (693)
+|++.+ ++...|..+++|++|++++|.+....+..|.++++|++|++++| .+...
T Consensus 132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 887762 33336778899999999999998777778899999999999984 55555
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
.+..|.++++|++|++++|++.+.. .+..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~------------------------------------------------- 216 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMP--NLTP------------------------------------------------- 216 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCC--CCTT-------------------------------------------------
T ss_pred ChhhccCCCCCCEEECCCCcccccc--cccc-------------------------------------------------
Confidence 5567889999999999999887642 1222
Q ss_pred ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCC
Q 037315 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 586 (693)
+++|++|++++|++.+..|..|..+++|++|++++|+++++.+..|.++++|+.|+|++|++++..+..+..+++|
T Consensus 217 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 217 ----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 5689999999999998888999999999999999999999888899999999999999999998888888889999
Q ss_pred CEEecCCCcCcccCC
Q 037315 587 AVFSVAYNNLSGEIP 601 (693)
Q Consensus 587 ~~L~l~~N~l~~~~p 601 (693)
+.|++++|++.|.+.
T Consensus 293 ~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 293 VELHLHHNPWNCDCD 307 (452)
T ss_dssp CEEECCSSCEECSTT
T ss_pred CEEEccCCCcCCCCC
Confidence 999999999988665
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.9e-29 Score=250.22 Aligned_cols=250 Identities=24% Similarity=0.296 Sum_probs=171.6
Q ss_pred eEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC--ccccccCCCCCCEEECcC
Q 037315 271 WLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP--IPVEFCHLYSLQILDISD 348 (693)
Q Consensus 271 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~ 348 (693)
.++.+++.++ .+|..+. +++++|++++|.++...+..+.++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4444444444 2333222 3555555555555533333445555555555555555422 133444566666666666
Q ss_pred CcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccC
Q 037315 349 NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEV 427 (693)
Q Consensus 349 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 427 (693)
|.+. .++. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 88 n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Cccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 6553 1222 35566777777777777765444 46777788888888888887777
Q ss_pred CcccCCCCCCCEEEccCCcCcc-cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 428 PVQLCGLNQLQLLDLSNNNLHG-LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 428 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------- 173 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------- 173 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhh-------------------------------------------------
Confidence 7777788888888888887765 45555544
Q ss_pred ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC-C
Q 037315 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK-E 585 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~ 585 (693)
+++|++|++++|++++..|..+..+++|++|++++|+++++.+..+..+++|++|++++|++.+..|..+..++ +
T Consensus 174 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 174 ----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred ----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 45788888888888877788888888899999999988888777888889999999999999888888888884 8
Q ss_pred CCEEecCCCcCcccCC
Q 037315 586 LAVFSVAYNNLSGEIP 601 (693)
Q Consensus 586 L~~L~l~~N~l~~~~p 601 (693)
|++|++++|+++|.++
T Consensus 250 L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 250 LAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEEECTTCCEECSGG
T ss_pred CCEEEccCCCeecccC
Confidence 9999999999887644
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.9e-29 Score=249.81 Aligned_cols=254 Identities=24% Similarity=0.300 Sum_probs=213.6
Q ss_pred CEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcc
Q 037315 294 EGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM 373 (693)
Q Consensus 294 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 373 (693)
+.++.+++.++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 46777777776 3444332 5778888888887755555577778888888877776521
Q ss_pred cccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCC
Q 037315 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 374 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ 452 (693)
+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+
T Consensus 68 --~~~~~-~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 68 --GCCSQ-SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp --EEEEH-HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred --cCccc-ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 11122 4557899999999999998 467779999999999999999997655 579999999999999999998887
Q ss_pred CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc-cCchh
Q 037315 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG-HIPPQ 531 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 531 (693)
..+.. +++|++|++++|.+.+ ..|..
T Consensus 144 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 144 GIFNG-----------------------------------------------------LSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp TTTTT-----------------------------------------------------CTTCCEEECTTCEEGGGEECSC
T ss_pred hhccc-----------------------------------------------------CcCCCEEECCCCccccccchhH
Confidence 77755 5589999999999987 67889
Q ss_pred hccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccC-cC
Q 037315 532 VGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFA-TF 610 (693)
Q Consensus 532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l 610 (693)
+..+++|++|++++|+++++.|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ .+
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999988888899999999999999999999998888874 89
Q ss_pred CcccccCccCCCCCCC
Q 037315 611 NENSYEGNTFLCGLPL 626 (693)
Q Consensus 611 ~~~~~~~n~~~c~~~~ 626 (693)
..+++++|++.|+|+.
T Consensus 251 ~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 251 AFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEEECTTCCEECSGGG
T ss_pred CEEEccCCCeecccCh
Confidence 9999999999999864
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=257.70 Aligned_cols=208 Identities=25% Similarity=0.241 Sum_probs=130.3
Q ss_pred CCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEE
Q 037315 217 MNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGL 296 (693)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (693)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344455666777766 6666542 467777777777776666667777777777777777776666667777777777
Q ss_pred eccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCEEECcCCc-CCCCCCCCCCCCcccEEEccCccc
Q 037315 297 YLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQILDISDNN-ISGSLPSCFHPLSITQVHLSKNML 374 (693)
Q Consensus 297 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~ 374 (693)
++++|.+++..+..++++++|++|++++|.+....+ ..+..+++|++|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 777777765444446666666666666666664333 345666666666666653 32
Q ss_pred ccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315 375 HGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 375 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 452 (693)
.++...+..+++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|++|++++|.+++..+
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 2222255566666667776666666556666666677777777766654333334446666677776666655443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=255.41 Aligned_cols=280 Identities=19% Similarity=0.172 Sum_probs=212.5
Q ss_pred CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII 321 (693)
Q Consensus 242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 321 (693)
|+.....+.+++.++.++ ..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 555666777888777643 3332 5788888888888866666788888888888888888877777788888888888
Q ss_pred ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCc-ccccCCCCCcEEeCcCc-cc
Q 037315 322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG-GTFFNCSSLVTLDLSYN-LL 399 (693)
Q Consensus 322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~i 399 (693)
+++|.+.+..+..+..+++|++|++++|++.+ ++. ..+..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence 88888876655557778888888888887762 222 36778899999999998 46
Q ss_pred CCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhh
Q 037315 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFS 479 (693)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 479 (693)
....+..+.++++|++|++++|++++..|..+..+++|++|++++|++....+..+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------- 220 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV---------------------- 220 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----------------------
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----------------------
Confidence 6666778889999999999999999888888999999999999999875432221111
Q ss_pred hcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc---cCCCCCeeeCCCccCCcc----C
Q 037315 480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---NLTRIQTLNLSHNNLTGL----I 552 (693)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~ 552 (693)
+++|++|++++|++.+..+..+. ..+.++.++++++.+++. +
T Consensus 221 -------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 221 -------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp -------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred -------------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 55799999999998876554433 456778888888877652 4
Q ss_pred cccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 553 PSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
|..+..+++|++|++++|+++...+..+..+++|++|++++|++.|.+|
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6778888999999999999985444446888999999999999988766
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.2e-27 Score=253.12 Aligned_cols=248 Identities=26% Similarity=0.235 Sum_probs=190.0
Q ss_pred CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324 (693)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 324 (693)
...++.++..++.+ |..+. +++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCcc-CCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45677777776653 33332 6788888888888877777888888888888888888877777888888888888888
Q ss_pred CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCc-ccCCCc
Q 037315 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN-LLNGSI 403 (693)
Q Consensus 325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~ 403 (693)
|.+....+..|..+++|++|++++|++.+ ++...|..+++|++|++++| .+....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence 88887776778888888888888887752 23336777888888888874 444444
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315 404 PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH 483 (693)
Q Consensus 404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
+..|.++++|++|++++|++++. | .+..+++|++|++++|++.+..|..|..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 240 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG-------------------------- 240 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence 45678888888888888888743 3 4777888888888888888777766655
Q ss_pred CCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCC
Q 037315 484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 563 (693)
+++|+.|++++|++.+..+..|..+++|++|+|++|+++++++..|..+++|+
T Consensus 241 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 241 ---------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ---------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 44788888888888888888888888888888888888888777888888888
Q ss_pred EEeCCCccccc
Q 037315 564 SLDLSYNKLNG 574 (693)
Q Consensus 564 ~L~Ls~N~l~~ 574 (693)
.|+|++|++..
T Consensus 294 ~L~L~~Np~~C 304 (452)
T 3zyi_A 294 ELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCEEC
T ss_pred EEEccCCCcCC
Confidence 88888888764
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.3e-27 Score=252.07 Aligned_cols=247 Identities=28% Similarity=0.250 Sum_probs=160.7
Q ss_pred CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324 (693)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 324 (693)
.+.++.++..+..++ ..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVP-DGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCC-SCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCC-CCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445666666665532 3222 5667777777777666666677777777777777777666666677777777777777
Q ss_pred CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCc-ccCCCc
Q 037315 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN-LLNGSI 403 (693)
Q Consensus 325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~ 403 (693)
|.+....+..|..+++|++|++++|.+.. ++...|..+++|++|++++| .+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 77766555566667777777777666642 22225566677777777763 333333
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315 404 PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH 483 (693)
Q Consensus 404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
+..|.++++|++|++++|.++. +| .+..+++|++|++++|++++..|..|..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 229 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------- 229 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence 4456667777777777777763 33 3666677777777777776666666554
Q ss_pred CCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCC
Q 037315 484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 563 (693)
+++|+.|++++|++.+..+..|..+++|++|+|++|+++++.+..|..+++|+
T Consensus 230 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 230 ---------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ---------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ---------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 34677777777777766666677777777777777777766666677777777
Q ss_pred EEeCCCcccc
Q 037315 564 SLDLSYNKLN 573 (693)
Q Consensus 564 ~L~Ls~N~l~ 573 (693)
.|+|++|++.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 7777777665
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.2e-30 Score=289.53 Aligned_cols=202 Identities=11% Similarity=0.036 Sum_probs=92.3
Q ss_pred cCCCCCEEEccCCcccccCCCCCCC-CC-CCCEEEccCCc-CcccCChhhhhcCCCCcEEEccCCcccccC----CccCC
Q 037315 143 NNTKLRQLSLVNDSLAGPFRLPIHS-HR-HLRLLDVSNNN-FQGHIPVEIGDILPRLISFNISMNALDGSI----PSSFG 215 (693)
Q Consensus 143 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~-~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~ 215 (693)
.+++|++|++++|.+++.....+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++.. +..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555666666655554433322322 22 25566665554 111111112223555666666655544331 11233
Q ss_pred CCCCCCEEEcccCcccc----ccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCcccc---ccCCcCCc
Q 037315 216 NMNLLQILDLSNNQLTG----EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFV---GEIPQSLS 288 (693)
Q Consensus 216 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~ 288 (693)
.+++|++|++++|.+.+ .++. ++..+++|++|++++|.+.+ .+..+..+++|++|++++.... ...+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45555666665555541 1111 12235556666665555554 2344455555555555532211 11223344
Q ss_pred CCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCEEECc
Q 037315 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQILDIS 347 (693)
Q Consensus 289 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~ 347 (693)
.+++|+.|+++++... .++..+..+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 4555555555554222 344445555555555555555432221 223455555555555
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.1e-30 Score=286.14 Aligned_cols=412 Identities=12% Similarity=0.062 Sum_probs=290.8
Q ss_pred chhhhhcCCCCCEEEccCCccc---ccCCCCC------------CCCCCCCEEEccCCcCcccCChhhhhcCCC-CcEEE
Q 037315 137 PNWLLENNTKLRQLSLVNDSLA---GPFRLPI------------HSHRHLRLLDVSNNNFQGHIPVEIGDILPR-LISFN 200 (693)
Q Consensus 137 ~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l------------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~ 200 (693)
+..+++.+++|++|+++++... +..+... ..+++|++|++++|.+++..+..+...+++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3444566777777777665321 1111111 267899999999999886666666664555 99999
Q ss_pred ccCCc-ccc-cCCccCCCCCCCCEEEcccCccccccc---hHHhhCCCCCcEEEcccccccc----ccCccCCCCCCCCe
Q 037315 201 ISMNA-LDG-SIPSSFGNMNLLQILDLSNNQLTGEIP---EHLAMGCVNLEFLALSNNSLKG----HMFSRNFNLINLRW 271 (693)
Q Consensus 201 L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~ 271 (693)
+++|. +.. ..+....++++|++|++++|.+.+.-. ..+...+++|++|++++|.+.+ ..+..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99986 221 122223478999999999999875422 1234468999999999999873 23344567899999
Q ss_pred EeccCccccccCCcCCcCCCCCCEEeccCCccc---ccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcC
Q 037315 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS---GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348 (693)
Q Consensus 272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 348 (693)
|++++|.+.+ ++..+..+++|++|+++.+... ...+..+..+++|+.+.++++.. ...|..+..+++|++|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9999999885 5677888999999999864332 23445677889999999988643 35677788899999999999
Q ss_pred CcCCCCCCC--CCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC-----------cccCCC-cchhhhCCCCCC
Q 037315 349 NNISGSLPS--CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY-----------NLLNGS-IPDWIDGLSQLS 414 (693)
Q Consensus 349 n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~-~~~~~~~l~~L~ 414 (693)
|.+.+.... ...+++|+.|+++ +.+........+..+++|++|++++ +.+++. .+.....+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 986543321 2347889999998 4443332222456789999999994 455533 223345689999
Q ss_pred EEEccCCcccccCCcccCC-CCCCCEEEcc----CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccc
Q 037315 415 HLILGNNNLEGEVPVQLCG-LNQLQLLDLS----NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEK 489 (693)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (693)
+|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+.+. .+..
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~------------------~~~~------------- 430 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN------------------GVRS------------- 430 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH------------------HHHH-------------
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH------------------HHHH-------------
Confidence 9999999998776666665 8999999997 34444321110 0000
Q ss_pred cccceeeeecccceeeeccccccCcceEECCCCc--ccccCchhhc-cCCCCCeeeCCCccCCcc-CcccccCCCCCCEE
Q 037315 490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK--LIGHIPPQVG-NLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESL 565 (693)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 565 (693)
.. ..+++|+.|++++|. +++..+..+. .+++|++|++++|++++. .+..+.++++|++|
T Consensus 431 ---------------~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 431 ---------------LL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp ---------------HH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred ---------------HH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 00 116689999998654 6655555554 489999999999999863 34556889999999
Q ss_pred eCCCcccccc-CCcccccCCCCCEEecCCCcCccc
Q 037315 566 DLSYNKLNGK-IPHQLVELKELAVFSVAYNNLSGE 599 (693)
Q Consensus 566 ~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 599 (693)
+|++|++++. ++.....+++|++|++++|+++..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999998754 344456789999999999998764
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.7e-27 Score=237.73 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=50.1
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 45555555555554444445555555566666665555555555556666666666666655444555556666666666
Q ss_pred CCcCcccCC
Q 037315 593 YNNLSGEIP 601 (693)
Q Consensus 593 ~N~l~~~~p 601 (693)
+|++.+.++
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 666655443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-27 Score=237.44 Aligned_cols=211 Identities=25% Similarity=0.316 Sum_probs=186.1
Q ss_pred CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEE
Q 037315 362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN-LEGEVPVQLCGLNQLQLL 440 (693)
Q Consensus 362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 440 (693)
++++.|++++|.+.+ ++...|..+++|++|++++|.+++..+..|.++++|++|++++|+ ++...+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 345555555555533 333378889999999999999998888899999999999999997 887778889999999999
Q ss_pred EccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECC
Q 037315 441 DLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS 520 (693)
Q Consensus 441 ~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 520 (693)
++++|++.+..+..|.. +++|++|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~ 137 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRG-----------------------------------------------------LAALQYLYLQ 137 (285)
T ss_dssp ECTTSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhC-----------------------------------------------------CcCCCEEECC
Confidence 99999999888877765 5589999999
Q ss_pred CCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315 521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI 600 (693)
Q Consensus 521 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 600 (693)
+|++.+..+..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 99999887788999999999999999999998888999999999999999999999999999999999999999999877
Q ss_pred CCCccccCcCCcccccCccCCCCCCC
Q 037315 601 PEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 601 p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
+..+..++++..+++++||+.|+|+.
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHcccCcccCEEeccCCCccCCCCc
Confidence 77778889999999999999999975
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-26 Score=233.82 Aligned_cols=170 Identities=22% Similarity=0.306 Sum_probs=92.0
Q ss_pred CCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEEC
Q 037315 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346 (693)
Q Consensus 267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 346 (693)
+++++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33444444555555555555554 44444555555555555555554 34555556666666666
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc
Q 037315 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE 426 (693)
Q Consensus 347 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 426 (693)
++|++.+.+|..+.. . ... +.+.++++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 665555444432210 0 000 13455677777777777776 556667777777777777777663
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFD 456 (693)
Q Consensus 427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 456 (693)
+|..+..+++|++|++++|++.+..|..+.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 444566666666666666665555544443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-28 Score=248.58 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCccc-CCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL-CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY 464 (693)
Q Consensus 386 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~ 464 (693)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------- 189 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--------- 189 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---------
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---------
Confidence 4567777777777776666667777777777777777776555555 356777777777777665422111
Q ss_pred CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315 465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS 544 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 544 (693)
+++|++|++++|++++..+ .+..+++|++|+++
T Consensus 190 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 190 ----------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLR 222 (317)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECT
T ss_pred ----------------------------------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECc
Confidence 4467777777777775433 47777777777777
Q ss_pred CccCCccCcccccCCCCCCEEeCCCcccc-ccCCcccccCCCCCEEecCCC
Q 037315 545 HNNLTGLIPSTFSNLKQIESLDLSYNKLN-GKIPHQLVELKELAVFSVAYN 594 (693)
Q Consensus 545 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N 594 (693)
+|+++++ |..+..+++|+.|++++|++. +.+|..+..+++|+.+++++|
T Consensus 223 ~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 223 NNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 7777754 556777777777777777776 566666777777777777643
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-28 Score=250.20 Aligned_cols=246 Identities=21% Similarity=0.201 Sum_probs=186.0
Q ss_pred cCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEE
Q 037315 288 SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQV 367 (693)
Q Consensus 288 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 367 (693)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|++.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~--------------- 93 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ--------------- 93 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE---------------
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc---------------
Confidence 344456666666666655555555666666666666666554333 566666666666666654
Q ss_pred EccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 037315 368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447 (693)
Q Consensus 368 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 447 (693)
.+...++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 94 --------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 94 --------------ELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp --------------EEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred --------------cccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 122337899999999998865443 368899999999999988888899999999999999999
Q ss_pred cccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc
Q 037315 448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH 527 (693)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 527 (693)
.+..+..+.. .+++|++|++++|++++.
T Consensus 157 ~~~~~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 157 DTVNFAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CEEEGGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE
T ss_pred CcccHHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc
Confidence 8766554421 156899999999999866
Q ss_pred CchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCc-ccCCCCccc
Q 037315 528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS-GEIPEWKAQ 606 (693)
Q Consensus 528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~ 606 (693)
+ ....+++|++|++++|+++++++. +..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2 334589999999999999987554 899999999999999999 46778899999999999999999 577777777
Q ss_pred cCcCCcccccCccCCCC
Q 037315 607 FATFNENSYEGNTFLCG 623 (693)
Q Consensus 607 ~~~l~~~~~~~n~~~c~ 623 (693)
++.+..+.+.+++.+.+
T Consensus 261 ~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cccceEEECCCchhccC
Confidence 77777777775544433
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=255.14 Aligned_cols=109 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|+.|+|++|.+++.. ....+++|+.|+|++|.+++++|. +..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred cccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 4444444444444331 122355555555555555554333 5555555555555555553 34445555555566666
Q ss_pred CCcCc-ccCCCCccccCcCCccccc-------CccCCCCCC
Q 037315 593 YNNLS-GEIPEWKAQFATFNENSYE-------GNTFLCGLP 625 (693)
Q Consensus 593 ~N~l~-~~~p~~~~~~~~l~~~~~~-------~n~~~c~~~ 625 (693)
+|++. +.+|.++..+..+..+.+. ++++.|.|+
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 66555 2334444344444333333 677778764
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.8e-29 Score=275.07 Aligned_cols=407 Identities=15% Similarity=0.121 Sum_probs=199.6
Q ss_pred hcCCCCCCEEEccCccccccCc--------------hhhhhcCCCCCEEEccCCcccccCCCCCC-CCCCCCEEEccCC-
Q 037315 116 LYYQHDLEDVHFSRIQMNGEFP--------------NWLLENNTKLRQLSLVNDSLAGPFRLPIH-SHRHLRLLDVSNN- 179 (693)
Q Consensus 116 l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n- 179 (693)
+..+++|++|+++++.....+. ..+...+++|++|++++|.+++.....+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4455666666666654221110 12234566777777777766654443343 4667777777776
Q ss_pred cCcccCChhhhhcCCCCcEEEccCCcccccCCccC----CCCCCCCEEEcccCc--cccccchHHhhCCCCCcEEEcccc
Q 037315 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF----GNMNLLQILDLSNNQ--LTGEIPEHLAMGCVNLEFLALSNN 253 (693)
Q Consensus 180 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n 253 (693)
.+++.....+...+++|++|++++|.+++..+..+ ..+++|++|++++|. +.......+...+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 34322222333346777777777776654333322 255677777777765 221111222234677777777766
Q ss_pred ccccccCccCCCCCCCCeEeccCcc-------ccccCCcCCcCCCCCCEE-eccCCcccccCCccccCCCCCcEEEccCC
Q 037315 254 SLKGHMFSRNFNLINLRWLQLEGNH-------FVGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTWLIHIIMPKN 325 (693)
Q Consensus 254 ~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 325 (693)
...+..+..+..+++|++|++..+. +.+ .+..+.++++|+.| .+.+... +.++..+..+++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 3222244445566667777654432 221 12234555666665 2332221 122333334555666666655
Q ss_pred ccccCcc-ccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC--------
Q 037315 326 HLEGPIP-VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY-------- 396 (693)
Q Consensus 326 ~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-------- 396 (693)
.+.+... ..+..+++|+.|++++| +. ..........+++|++|++++
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----------------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IE-----------------------DAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GH-----------------------HHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cC-----------------------HHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 5432211 11335555555555554 21 110000222355666665522
Q ss_pred -cccCCCcchhh-hCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcc--C----CcCcccCCCCcccCccccccCCC
Q 037315 397 -NLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLS--N----NNLHGLIPPCFDNTKLHESYNNS 467 (693)
Q Consensus 397 -n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~~~~~~~~~l~~~~~~~ 467 (693)
+.+++.....+ .++++|++|.+..|.+++.....+. .+++|+.|+++ + +.++....+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-------------- 421 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-------------- 421 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH--------------
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh--------------
Confidence 23332222222 2366666666666666544443333 36666666666 2 222211000
Q ss_pred CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhcc-CCCCCeeeCCCc
Q 037315 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN-LTRIQTLNLSHN 546 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n 546 (693)
..+... ...+++|+.|++++ .+++..+..+.. +++|++|+|++|
T Consensus 422 ----~~~~~l------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 422 ----IGFGAI------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp ----HHHHHH------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred ----hHHHHH------------------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence 000000 01144566666655 454444444443 666666766666
Q ss_pred cCCccCcccc-cCCCCCCEEeCCCccccccCCc-ccccCCCCCEEecCCCcCc
Q 037315 547 NLTGLIPSTF-SNLKQIESLDLSYNKLNGKIPH-QLVELKELAVFSVAYNNLS 597 (693)
Q Consensus 547 ~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~ 597 (693)
.+++..+..+ .++++|++|+|++|++++.... ....+++|+.|++++|+++
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6654433333 4566667777776666433322 2334566677777766664
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-25 Score=227.60 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=137.4
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEE
Q 037315 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248 (693)
Q Consensus 169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 248 (693)
++++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence 45666666666665 56665555 566666666666666 55666666666666666666666 5665543 36666666
Q ss_pred EccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc
Q 037315 249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328 (693)
Q Consensus 249 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 328 (693)
++++|.+.+..|..+... ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 666665555444443320 01112334566666666666665 45555666666666666666665
Q ss_pred cCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh
Q 037315 329 GPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID 408 (693)
Q Consensus 329 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 408 (693)
+ +|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------------------~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPP------------------------IFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCC------------------------CTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHH------------------------HhcCCCCCCEEECCCCCchhhcchhhh
Confidence 3 334566666777777766666543332 344555666666666655555665666
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 037315 409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448 (693)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 448 (693)
++++|++|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6666666666666666666666666666666666655443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=241.11 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEec
Q 037315 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL 274 (693)
Q Consensus 195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 274 (693)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5777777777776 4555444 67777777777776 5555 25667777777766665322 4466666666
Q ss_pred cCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304 (693)
Q Consensus 275 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 304 (693)
++|.+++ +|. .+++|+.|++++|.++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence 6666653 222 3445555555555554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.8e-27 Score=249.56 Aligned_cols=244 Identities=21% Similarity=0.197 Sum_probs=170.4
Q ss_pred CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347 (693)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 347 (693)
+|++|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444444444444434444445555555555555443322 444555555555555544321 12566666666
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccC
Q 037315 348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV 427 (693)
Q Consensus 348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (693)
+|.+.+. .+ ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 108 ~N~l~~~-----------------------~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNISRV-----------------------SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCCCE-----------------------EE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCC-----------------------Cc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 6666532 11 23467888888888888777778888888888888888888877
Q ss_pred CcccC-CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 428 PVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 428 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
|..+. .+++|++|++++|.+++..+..+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------------------------------- 189 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVV--------------------------------------------------- 189 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCC---------------------------------------------------
T ss_pred hHHHhhhCCcccEEecCCCcccccccccc---------------------------------------------------
Confidence 77775 68899999999998876633221
Q ss_pred ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc-ccCCcccccCCC
Q 037315 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN-GKIPHQLVELKE 585 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~ 585 (693)
+++|+.|+|++|.+++..| .+..+++|+.|+|++|.++++ |..+..+++|+.|++++|++. +.+|..+..++.
T Consensus 190 ----l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 190 ----FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp ----CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ----CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 5679999999999997555 488999999999999999975 667899999999999999998 667778888888
Q ss_pred CCEEecC-------CCcCcccCCC
Q 037315 586 LAVFSVA-------YNNLSGEIPE 602 (693)
Q Consensus 586 L~~L~l~-------~N~l~~~~p~ 602 (693)
|+.++++ .++..|..+.
T Consensus 264 L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 264 VQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CcEEeccccccccCCCcccccCCc
Confidence 9888886 6666655543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=236.49 Aligned_cols=114 Identities=25% Similarity=0.283 Sum_probs=76.3
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249 (693)
Q Consensus 170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 249 (693)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 4677777777776 6666553 577777777777763 443 4577777777777776 5665 367777777
Q ss_pred ccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304 (693)
Q Consensus 250 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 304 (693)
+++|.+++... .+++|+.|++++|++++ +|.. +++|++|++++|.++
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 77777776433 45677777777777763 3432 356666666666665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-27 Score=241.03 Aligned_cols=247 Identities=22% Similarity=0.256 Sum_probs=154.0
Q ss_pred CCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc-ccCCcccc-------CCCCCcEEEccCCccccCccccc-
Q 037315 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRWLG-------NLTWLIHIIMPKNHLEGPIPVEF- 335 (693)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~- 335 (693)
..++|++|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 345566666666666 344433332 666666666663 22333333 45666666666666665555544
Q ss_pred -cCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCC-----CCCcEEeCcCcccCCCcchhhhC
Q 037315 336 -CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC-----SSLVTLDLSYNLLNGSIPDWIDG 409 (693)
Q Consensus 336 -~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~~~ 409 (693)
..+++|++|++++|++.+. |. .+..+ ++|++|++++|.+.+..+..+.+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~------------------------~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DA------------------------WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SS------------------------HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HhcCCCccEEEccCCCCcch-hH------------------------HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5666666666666666543 22 22222 67777777777777666667777
Q ss_pred CCCCCEEEccCCccccc--CCccc--CCCCCCCEEEccCCcCcccCC---CCcccCccccccCCCCCCchhhhHhhhhcc
Q 037315 410 LSQLSHLILGNNNLEGE--VPVQL--CGLNQLQLLDLSNNNLHGLIP---PCFDNTKLHESYNNSSSPDEQFKILFSIKG 482 (693)
Q Consensus 410 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++... ..+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------------- 225 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA-------------------------- 225 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--------------------------
Confidence 77777777777776543 22233 667777777777777653210 0000
Q ss_pred cCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc-hhhccCCCCCeeeCCCccCCccCcccccCCCC
Q 037315 483 HQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP-PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQ 561 (693)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 561 (693)
.+++|++|++++|++.+..| ..+..+++|++|++++|+++.+ |..+. ++
T Consensus 226 ---------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~ 275 (312)
T 1wwl_A 226 ---------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--AK 275 (312)
T ss_dssp ---------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--SE
T ss_pred ---------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--CC
Confidence 14567777777777776554 4456677888888888888744 54544 77
Q ss_pred CCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315 562 IESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598 (693)
Q Consensus 562 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 598 (693)
|++||+++|++++. |. +..+++|++|++++|++++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888755 54 7778888888888888764
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-24 Score=214.09 Aligned_cols=206 Identities=24% Similarity=0.302 Sum_probs=142.1
Q ss_pred CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEcc
Q 037315 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419 (693)
Q Consensus 340 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 419 (693)
..+.+++++++++. +|..+ +..++.|++++|.+.+. +...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57788998888874 34322 25677777777777433 33366777777777777777775555566777777777777
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeec
Q 037315 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT 499 (693)
Q Consensus 420 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (693)
+|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------ 131 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------ 131 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------------------
Confidence 77777666666677777777777777777666655544
Q ss_pred ccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcc
Q 037315 500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579 (693)
Q Consensus 500 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 579 (693)
+++|++|++++|++.+..+..|..+++|++|++++|.++++.+..|.++++|++|++++|++++..+..
T Consensus 132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 446777777777777665556777777777777777777766666777777777777777777666666
Q ss_pred cccCCCCCEEecCCCcCcccCC
Q 037315 580 LVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 580 l~~l~~L~~L~l~~N~l~~~~p 601 (693)
+..+++|+.|++++|++.|.++
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 6677777777777777766554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.4e-27 Score=235.92 Aligned_cols=249 Identities=21% Similarity=0.192 Sum_probs=125.9
Q ss_pred cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCc-ccCChhhh------hcCCCCcEEEccCCcccccCCccC-
Q 037315 143 NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ-GHIPVEIG------DILPRLISFNISMNALDGSIPSSF- 214 (693)
Q Consensus 143 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~- 214 (693)
..++|++|++++|.+ .++..+... |+.|++++|.++ ..+|.... ..+++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344455555555555 222222211 555555555552 23333332 014455555555555554444443
Q ss_pred -CCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCC-----CCCCeEeccCccccccCCcCCc
Q 037315 215 -GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNL-----INLRWLQLEGNHFVGEIPQSLS 288 (693)
Q Consensus 215 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~ 288 (693)
..+++|++|++++|.++ +. |..+..+ ++|++|++++|.+.+..+..+.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~-------------------------~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWA-------------------------TR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SCCSCCCSEEEEESCBCS-------------------------SS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred HhcCCCccEEEccCCCCc-------------------------ch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 45555555555555554 33 2222222 4444455555544444444445
Q ss_pred CCCCCCEEeccCCccccc--CCccc--cCCCCCcEEEccCCccccC---ccccccCCCCCCEEECcCCcCCCCCCCCCCC
Q 037315 289 KCSSLEGLYLNNNSLSGK--IPRWL--GNLTWLIHIIMPKNHLEGP---IPVEFCHLYSLQILDISDNNISGSLPSCFHP 361 (693)
Q Consensus 289 ~l~~L~~L~L~~n~i~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 361 (693)
.+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+. ....+..+++|++|++++|++.+..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----- 245 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----
Confidence 555555555555544322 11122 4455555555555555421 11223456677777777776664331
Q ss_pred CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315 362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD 441 (693)
Q Consensus 362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 441 (693)
...+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|+
T Consensus 246 ------------------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 246 ------------------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp ------------------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred ------------------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 113444566677777777666 4454444 6677777777777654 44 66777777777
Q ss_pred ccCCcCcc
Q 037315 442 LSNNNLHG 449 (693)
Q Consensus 442 l~~n~~~~ 449 (693)
+++|++++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 77777654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.1e-24 Score=216.13 Aligned_cols=110 Identities=24% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCEEECcCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEE
Q 037315 339 YSLQILDISDNNISGSLPSCF-HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417 (693)
Q Consensus 339 ~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 417 (693)
++|++|++++|++.+..+..+ ..++|+.|++++|++.+..+ ..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 457777777777664444222 23444444444444432222 2344444444444444444444444444444444444
Q ss_pred ccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 449 (693)
Q Consensus 418 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 449 (693)
+++|.+++..+..+..+++|++|++++|.+.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 44444444333344444444444444444443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.7e-24 Score=214.80 Aligned_cols=229 Identities=22% Similarity=0.207 Sum_probs=162.0
Q ss_pred EeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcC
Q 037315 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI 351 (693)
Q Consensus 272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 351 (693)
.+..+..+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444454 4454443 4688888888888876666778888888888888888766666777788888888888777
Q ss_pred CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc-CCcc
Q 037315 352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE-VPVQ 430 (693)
Q Consensus 352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~ 430 (693)
.+. +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..
T Consensus 89 ~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 89 QSL------------------------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CEE------------------------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred Ccc------------------------ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 532 222678889999999999999977776799999999999999999864 4778
Q ss_pred cCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccc
Q 037315 431 LCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV 510 (693)
Q Consensus 431 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (693)
+..+++|++|++++|++++..+..+..
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------------- 171 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRV----------------------------------------------------- 171 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHH-----------------------------------------------------
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhh-----------------------------------------------------
Confidence 888888888888888776554433322
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 589 (693)
+++|+ .|. +|++++|.++++.+..+.. .+|++|++++|++++..+..+..+++|+.|
T Consensus 172 l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 172 LHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp HHTCT---------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred hhhcc---------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEE
Confidence 11122 222 5666666666665554443 367777777777776666666777777777
Q ss_pred ecCCCcCcccCCC
Q 037315 590 SVAYNNLSGEIPE 602 (693)
Q Consensus 590 ~l~~N~l~~~~p~ 602 (693)
++++|+++|.+|.
T Consensus 230 ~l~~N~~~c~c~~ 242 (276)
T 2z62_A 230 WLHTNPWDCSCPR 242 (276)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EccCCcccccCCc
Confidence 7777777776653
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.8e-24 Score=212.90 Aligned_cols=205 Identities=26% Similarity=0.273 Sum_probs=114.8
Q ss_pred ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315 335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414 (693)
Q Consensus 335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 414 (693)
+..++++++++++++.++...+.. +..++.|++++|.+.+..+. .|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567788888998888887433222 24556666666665433332 55555666666666665553322 14555566
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315 415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF 494 (693)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (693)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------- 122 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------- 122 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------------------------------
Confidence 6666666555 34445555555666666665555555444443
Q ss_pred eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
+++|++|++++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++
T Consensus 123 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 123 ----------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ----------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 335555555555555554555555555555555555555555555555555555555555555
Q ss_pred cCCcccccCCCCCEEecCCCcCccc
Q 037315 575 KIPHQLVELKELAVFSVAYNNLSGE 599 (693)
Q Consensus 575 ~~~~~l~~l~~L~~L~l~~N~l~~~ 599 (693)
.+|..+...++|+.+++++|++.|.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccChhhcccccCCeEEeCCCCccCc
Confidence 3444444555555555555555543
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.3e-28 Score=266.39 Aligned_cols=419 Identities=14% Similarity=0.106 Sum_probs=240.0
Q ss_pred CchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCC
Q 037315 136 FPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFG 215 (693)
Q Consensus 136 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 215 (693)
.+..++..+++|++|+++++.........-.. . +.... .....+...+++|++|++++|.+++..+..+.
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~--------~-~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~ 126 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDG--------W-GGYVY-PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTT--------S-CCBCH-HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred CHHHHHhhCCCceEEeccCCCchhhccccccc--------c-cchhh-HHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH
Confidence 34455677888888888887532211100000 0 00000 00011222355666666666665544444443
Q ss_pred -CCCCCCEEEcccC-ccccccchHHhhCCCCCcEEEccccccccccCccC----CCCCCCCeEeccCcc--cccc-CCcC
Q 037315 216 -NMNLLQILDLSNN-QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN----FNLINLRWLQLEGNH--FVGE-IPQS 286 (693)
Q Consensus 216 -~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--l~~~-~~~~ 286 (693)
.+++|++|++++| .+.+.....+..++++|++|++++|.+.+..+..+ ..+++|++|++++|. +... ++..
T Consensus 127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 4566666666666 33322122333346666666666666554332222 245567777776665 1110 1111
Q ss_pred CcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc-------cccCccccccCCCCCCEE-ECcCCcCCCCCCCC
Q 037315 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH-------LEGPIPVEFCHLYSLQIL-DISDNNISGSLPSC 358 (693)
Q Consensus 287 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~ 358 (693)
+..+++|+.|++++|...+.++..+..+++|++|+++.+. +.+ .+..+.++++|+.+ .+.+... +.++..
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~ 284 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAV 284 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGG
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHH
Confidence 2335677777777662222245556666777777754442 222 22356677777777 3332221 111211
Q ss_pred C-CCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCC-cchhhhCCCCCCEEEccC---------CcccccC
Q 037315 359 F-HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS-IPDWIDGLSQLSHLILGN---------NNLEGEV 427 (693)
Q Consensus 359 ~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~ 427 (693)
. .+++|+.|++++|.+.+......+..+++|++|++++| +.+. .+.....+++|++|++.+ +.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 1 24567777777776544333224567889999999888 4322 223334588899998843 3444333
Q ss_pred CcccC-CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315 428 PVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506 (693)
Q Consensus 428 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (693)
...+. ++++|+.|++..|.+++.....+.
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-------------------------------------------------- 393 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIA-------------------------------------------------- 393 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHH--------------------------------------------------
Confidence 22332 478888888877776532211110
Q ss_pred ccccccCcceEECC--C----Cccccc-----CchhhccCCCCCeeeCCCccCCccCcccccC-CCCCCEEeCCCccccc
Q 037315 507 QGKVLSLLSGLDLS--C----NKLIGH-----IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN-LKQIESLDLSYNKLNG 574 (693)
Q Consensus 507 ~~~~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~ 574 (693)
..+++|+.|+++ + +.+++. .+..+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus 394 --~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 394 --RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp --HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred --hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 115689999998 3 455521 223367889999999987 676655555555 8999999999999976
Q ss_pred cCCccc-ccCCCCCEEecCCCcCcccCC-CCccccCcCCcccccCccC
Q 037315 575 KIPHQL-VELKELAVFSVAYNNLSGEIP-EWKAQFATFNENSYEGNTF 620 (693)
Q Consensus 575 ~~~~~l-~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~ 620 (693)
..+..+ ..+++|++|++++|++++... .....+++++.+++++|+.
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 655555 678999999999999965433 2345578899999999876
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=207.86 Aligned_cols=206 Identities=24% Similarity=0.263 Sum_probs=175.7
Q ss_pred cccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 037315 363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442 (693)
Q Consensus 363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 442 (693)
..+.++++++.+.. +|. .+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46788999888853 554 22 267999999999998777778999999999999999998776677888999999999
Q ss_pred cCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCC
Q 037315 443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCN 522 (693)
Q Consensus 443 ~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 522 (693)
++|++.+..+..|.. +++|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n 119 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQ-----------------------------------------------------LVNLAELRLDRN 119 (270)
T ss_dssp CSSCCCCCCTTTTTT-----------------------------------------------------CSSCCEEECCSS
T ss_pred CCCcCCcCCHhHccc-----------------------------------------------------ccCCCEEECCCC
Confidence 999998877766655 458999999999
Q ss_pred cccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315 523 KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99988888889999999999999999988888889999999999999999988777888899999999999999877777
Q ss_pred CccccCcCCcccccCccCCCCCC
Q 037315 603 WKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 603 ~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
.+..+.++..+++++||+.|+|+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 67788888999999999999986
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-24 Score=212.39 Aligned_cols=225 Identities=23% Similarity=0.251 Sum_probs=173.7
Q ss_pred CCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCc
Q 037315 293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372 (693)
Q Consensus 293 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 372 (693)
+..+++..+.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+.+
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------- 77 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD------------------- 77 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------
Confidence 34445555544322 2344566666666666666532 235566666666666666542
Q ss_pred ccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 452 (693)
++ .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 78 -----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 78 -----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp -----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 11 56778899999999999987777778889999999999999997777778899999999999999887777
Q ss_pred CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 532 (693)
..|.. +++|++|++++|++++..+..+
T Consensus 151 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 151 GVFDK-----------------------------------------------------LTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp TTTTT-----------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred HHhcc-----------------------------------------------------CccCCEEECCCCCcCccCHHHh
Confidence 66655 4589999999999998877778
Q ss_pred ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF 607 (693)
Q Consensus 533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 607 (693)
..+++|++|++++|+++++++..+..+++|+.|++++|++.+. +++|+.++++.|.++|.+|.+++.+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 8999999999999999998888889999999999999988743 5578889999999999999876544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8.3e-23 Score=203.21 Aligned_cols=203 Identities=25% Similarity=0.195 Sum_probs=120.1
Q ss_pred CcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccE
Q 037315 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQ 366 (693)
Q Consensus 287 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 366 (693)
+..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------ 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence 344556666666666665 2333332 4556666666666555555566666666666666655421
Q ss_pred EEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 037315 367 VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446 (693)
Q Consensus 367 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 446 (693)
+ ....+++|++|++++|.++ .+|..+.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 71 ------------~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 71 ------------Q--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ------------E--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ------------c--CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 1 1134566666666666666 445556666666666666666665555666666666666666666
Q ss_pred CcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc
Q 037315 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG 526 (693)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 526 (693)
+++..+..|.. +++|+.|++++|++++
T Consensus 136 l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 136 LKTLPPGLLTP-----------------------------------------------------TPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCCCCTTTTTT-----------------------------------------------------CTTCCEEECTTSCCSC
T ss_pred CCccChhhccc-----------------------------------------------------ccCCCEEECCCCcCCc
Confidence 66555555443 3356666666666665
Q ss_pred cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573 (693)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 573 (693)
..+..|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 5555566666666666666666643 444555566666666666664
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.2e-22 Score=198.14 Aligned_cols=162 Identities=27% Similarity=0.295 Sum_probs=145.2
Q ss_pred CCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCC
Q 037315 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466 (693)
Q Consensus 387 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~ 466 (693)
++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--------- 105 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc---------
Confidence 58899999999998888888999999999999999999888888899999999999999998887777655
Q ss_pred CCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCc
Q 037315 467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN 546 (693)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 546 (693)
+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 106 --------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 106 --------------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 558999999999999887778899999999999999
Q ss_pred cCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 547 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
+++++.+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 9999888889999999999999999998888889999999999999999998743
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.1e-22 Score=197.63 Aligned_cols=202 Identities=24% Similarity=0.245 Sum_probs=154.8
Q ss_pred CEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC
Q 037315 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421 (693)
Q Consensus 342 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 421 (693)
..+++..+.+.+. .......+++.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3444555544422 122236678888888887743 32 467788888888888888753 46788888888888888
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeeccc
Q 037315 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKN 501 (693)
Q Consensus 422 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (693)
.+++..+..+..+++|++|++++|++.+..+..|..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------------- 131 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-------------------------------------------- 131 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------------
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc--------------------------------------------
Confidence 888777777888888888888888888777766655
Q ss_pred ceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccc
Q 037315 502 IAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581 (693)
Q Consensus 502 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 581 (693)
+++|++|++++|++++..+..+..+++|++|++++|+++++.+..|..+++|++|++++|++++..|..+.
T Consensus 132 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 132 ---------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ---------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 45788888888888877777778888888888888888888777788888888888888888887777788
Q ss_pred cCCCCCEEecCCCcCcccCCC
Q 037315 582 ELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 582 ~l~~L~~L~l~~N~l~~~~p~ 602 (693)
.+++|++|++++|++.|.+|.
T Consensus 203 ~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCEEEccCCCccccCcH
Confidence 888888888888888877764
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.5e-22 Score=194.05 Aligned_cols=183 Identities=25% Similarity=0.319 Sum_probs=166.4
Q ss_pred CCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCC
Q 037315 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466 (693)
Q Consensus 387 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~ 466 (693)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------- 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------
Confidence 45788999999998 4565444 68999999999999888889999999999999999999988877765
Q ss_pred CCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCc
Q 037315 467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN 546 (693)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 546 (693)
+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 82 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 82 --------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 558999999999999888888999999999999999
Q ss_pred cCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCC-CC
Q 037315 547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG-LP 625 (693)
Q Consensus 547 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~-~~ 625 (693)
+++++.+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+.++..+++++|++.|+ |.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99999888899999999999999999988888899999999999999999988888888899999999999999998 43
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-23 Score=216.27 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=42.6
Q ss_pred CcceEECCCCccccc----Cchhhcc-CCCCCeeeCCCccCCccCc----ccccCCCCCCEEeCCCccccccCC------
Q 037315 513 LLSGLDLSCNKLIGH----IPPQVGN-LTRIQTLNLSHNNLTGLIP----STFSNLKQIESLDLSYNKLNGKIP------ 577 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------ 577 (693)
+|++|+|++|++.+. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 455555555555432 2223333 2355555555555554433 233445556666666665332222
Q ss_pred -cccccCCCCCEEecCCCcCccc
Q 037315 578 -HQLVELKELAVFSVAYNNLSGE 599 (693)
Q Consensus 578 -~~l~~l~~L~~L~l~~N~l~~~ 599 (693)
..+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 2344555566666666665544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7e-22 Score=191.27 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=41.7
Q ss_pred Ccc-eEECCCCcccccCchhhccCCCCCeeeCCCcc-CCccCcccccCC-CCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315 513 LLS-GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KQIESLDLSYNKLNGKIPHQLVELKELAVF 589 (693)
Q Consensus 513 ~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 589 (693)
+|+ +|++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|+.|++++|++++..+. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCcee
Confidence 455 5555555555333333333 556666666663 555555556665 6666666666666533222 34555556
Q ss_pred ecCCC
Q 037315 590 SVAYN 594 (693)
Q Consensus 590 ~l~~N 594 (693)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 65554
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=219.52 Aligned_cols=243 Identities=19% Similarity=0.227 Sum_probs=145.7
Q ss_pred CCcCCCCCCEEeccCCcccccCC----ccccCCCCCcEEEccCCcc---ccCcccc-------ccCCCCCCEEECcCCcC
Q 037315 286 SLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTWLIHIIMPKNHL---EGPIPVE-------FCHLYSLQILDISDNNI 351 (693)
Q Consensus 286 ~l~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~---~~~~~~~-------~~~l~~L~~L~l~~n~~ 351 (693)
.+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+ .+..|.. +..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34444455555555555443322 2234455555555555322 2222222 35666777777777666
Q ss_pred CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh----hCC---------CCCCEEEc
Q 037315 352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI----DGL---------SQLSHLIL 418 (693)
Q Consensus 352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l---------~~L~~L~L 418 (693)
.+... ..++. .+..+++|++|++++|.++...+..+ ..+ ++|++|++
T Consensus 107 ~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 107 GPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred CHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 53110 01221 44556677777777776653333222 223 67777777
Q ss_pred cCCccc-ccCC---cccCCCCCCCEEEccCCcCcc-----cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccc
Q 037315 419 GNNNLE-GEVP---VQLCGLNQLQLLDLSNNNLHG-----LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEK 489 (693)
Q Consensus 419 ~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (693)
++|+++ ...+ ..+..+++|++|++++|++.. ..+..+..
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-------------------------------- 214 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-------------------------------- 214 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------------------------------
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------------------------------
Confidence 777776 2233 345567777777777777652 11112211
Q ss_pred cccceeeeecccceeeeccccccCcceEECCCCccc----ccCchhhccCCCCCeeeCCCccCCcc----Cccccc--CC
Q 037315 490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI----GHIPPQVGNLTRIQTLNLSHNNLTGL----IPSTFS--NL 559 (693)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~--~l 559 (693)
+++|++|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+. .+
T Consensus 215 ---------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 215 ---------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp ---------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred ---------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 457788888888875 45677788888888888888888765 345553 37
Q ss_pred CCCCEEeCCCccccc----cCCccc-ccCCCCCEEecCCCcCcccCC
Q 037315 560 KQIESLDLSYNKLNG----KIPHQL-VELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 560 ~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~p 601 (693)
++|++|+|++|++++ .+|..+ .++++|++|++++|++++..+
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888888886 366666 557888888888888886653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.9e-23 Score=215.64 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=47.1
Q ss_pred CcceEECCCCcccccCc----hhhccCCCCCeeeCCCccCCccCc-------ccccCCCCCCEEeCCCccccccCCcc
Q 037315 513 LLSGLDLSCNKLIGHIP----PQVGNLTRIQTLNLSHNNLTGLIP-------STFSNLKQIESLDLSYNKLNGKIPHQ 579 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 579 (693)
+|++|+|++|++.+..+ ..+..+++|++|++++|.+.++.+ ..+..+++|+.||+++|++....+..
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 67777777777765544 234566788888888888554433 36777888888999999887664443
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.6e-23 Score=209.41 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=60.6
Q ss_pred ccCcceEECCCCc-ccccCchhhccCCCCCeeeCCCcc-CCccCcccccCCCCCCEEeCCCccccccCCcccccC-CCCC
Q 037315 511 LSLLSGLDLSCNK-LIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL-KELA 587 (693)
Q Consensus 511 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~ 587 (693)
+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +. ...+..+ .+++
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~ 296 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALP 296 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHST
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCc
Confidence 4567777777777 565666677788888888888885 32222235777888888888888 33 2233333 2366
Q ss_pred EEecCCCcCcccCCCCc
Q 037315 588 VFSVAYNNLSGEIPEWK 604 (693)
Q Consensus 588 ~L~l~~N~l~~~~p~~~ 604 (693)
.|++++|++++..|.++
T Consensus 297 ~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 297 HLQINCSHFTTIARPTI 313 (336)
T ss_dssp TSEESCCCSCCTTCSSC
T ss_pred ceEEecccCccccCCcc
Confidence 66788888888777654
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.5e-23 Score=209.49 Aligned_cols=199 Identities=21% Similarity=0.244 Sum_probs=96.3
Q ss_pred CCCEEEcccCccccccchHHhhCC--CCCcEEEccccccccccCccCCCCCCCCeEeccCcccccc-CCcCCcCCCCCCE
Q 037315 219 LLQILDLSNNQLTGEIPEHLAMGC--VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGE-IPQSLSKCSSLEG 295 (693)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~ 295 (693)
.++.++++++.+. +..+ ..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3667777777654 2222 223 6677777777766654433 33456666666666655433 4444555555555
Q ss_pred EeccCCcccccCCccccCCCCCcEEEccCC-ccccC-ccccccCCCCCCEEECcCC-cCCCCCCCCCCCCcccEEEccCc
Q 037315 296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKN-HLEGP-IPVEFCHLYSLQILDISDN-NISGSLPSCFHPLSITQVHLSKN 372 (693)
Q Consensus 296 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n 372 (693)
|++++|.+++..+..++.+++|++|++++| .+.+. .+..+..+++|++|++++| .+.+.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------ 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------ 184 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence 555555555444444444555555555555 23321 2233344444444444444 33210
Q ss_pred ccccccCcccccCCC-CCcEEeCcCc--ccC-CCcchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccCC
Q 037315 373 MLHGQLKGGTFFNCS-SLVTLDLSYN--LLN-GSIPDWIDGLSQLSHLILGNNN-LEGEVPVQLCGLNQLQLLDLSNN 445 (693)
Q Consensus 373 ~~~~~~~~~~~~~~~-~L~~L~L~~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 445 (693)
.++. .+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 185 ----~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 185 ----HVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ----HHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ----HHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 0111 234444 5555555555 222 1233344445555555555555 34334444444444555544444
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.2e-21 Score=189.55 Aligned_cols=197 Identities=19% Similarity=0.212 Sum_probs=161.3
Q ss_pred cccEEEccCcccccccCcccccCCCCCcEEeCcCcc-cCCCcchhhhCCCCCCEEEccC-CcccccCCcccCCCCCCCEE
Q 037315 363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL-LNGSIPDWIDGLSQLSHLILGN-NNLEGEVPVQLCGLNQLQLL 440 (693)
Q Consensus 363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 440 (693)
+++.|++++|++.+ ++...|..+++|++|++++|. ++...+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555555533 333478889999999999997 8877777899999999999998 99998878889999999999
Q ss_pred EccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc---eE
Q 037315 441 DLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS---GL 517 (693)
Q Consensus 441 ~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L 517 (693)
++++|++++. |. |.. +++|+ +|
T Consensus 111 ~l~~n~l~~l-p~-~~~-----------------------------------------------------l~~L~~L~~L 135 (239)
T 2xwt_C 111 GIFNTGLKMF-PD-LTK-----------------------------------------------------VYSTDIFFIL 135 (239)
T ss_dssp EEEEECCCSC-CC-CTT-----------------------------------------------------CCBCCSEEEE
T ss_pred eCCCCCCccc-cc-ccc-----------------------------------------------------ccccccccEE
Confidence 9999999874 33 443 33455 99
Q ss_pred ECCCC-cccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCcc-ccccCCcccccC-CCCCEEecCC
Q 037315 518 DLSCN-KLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK-LNGKIPHQLVEL-KELAVFSVAY 593 (693)
Q Consensus 518 ~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l~~ 593 (693)
++++| ++.+..+..|..+++|+ +|++++|+++.+.+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 99999 99988888899999999 9999999999877777776 899999999995 998888889999 9999999999
Q ss_pred CcCcccCCCCccccCcCCcccccCcc
Q 037315 594 NNLSGEIPEWKAQFATFNENSYEGNT 619 (693)
Q Consensus 594 N~l~~~~p~~~~~~~~l~~~~~~~n~ 619 (693)
|++++. |.. .+..+..+.+.++.
T Consensus 215 N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CccccC-Chh--HhccCceeeccCcc
Confidence 999854 442 56677777776654
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=196.70 Aligned_cols=56 Identities=29% Similarity=0.453 Sum_probs=31.8
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 573 (693)
+|++|++++|+++ .+|..+. ++|++|+|++|+++++ | .+..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCC
Confidence 4555555555555 3333332 5666666666666654 2 2556666777777777665
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.9e-21 Score=184.91 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=151.1
Q ss_pred cEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCC
Q 037315 390 VTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSS 469 (693)
Q Consensus 390 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~ 469 (693)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|++.+..|..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 67889999888 4555443 68999999999999877778999999999999999998888887766
Q ss_pred CchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCC
Q 037315 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT 549 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (693)
+++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 79 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 79 -----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 458999999999998777777888999999999999999
Q ss_pred ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCCCCC
Q 037315 550 GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC 629 (693)
Q Consensus 550 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c 629 (693)
++.|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.|.++- ..+.. .+..++..- ....|
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l-----~~l~~-~l~~~~~~~--~~~~C 189 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-----KWLAD-YLHTNPIET--SGARC 189 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG-----HHHHH-HHHHCCCBC--SCCBE
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc-----HHHHH-HHHhCCCCc--cCCCc
Confidence 88888899999999999999999988888888899999999999998875431 11111 112222111 12257
Q ss_pred CCCCCCCccccccccCCCCC
Q 037315 630 RSPTTMSEASIENERDDNLI 649 (693)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~ 649 (693)
..|....+..+.....+++.
T Consensus 190 ~~P~~l~g~~l~~l~~~~~~ 209 (220)
T 2v9t_B 190 TSPRRLANKRIGQIKSKKFR 209 (220)
T ss_dssp EESGGGTTCBGGGSCGGGCC
T ss_pred CCchHHcCCchhhCCHHHCc
Confidence 77877777777666665543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4.6e-21 Score=192.65 Aligned_cols=195 Identities=22% Similarity=0.343 Sum_probs=134.4
Q ss_pred ccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCc
Q 037315 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLV 390 (693)
Q Consensus 311 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 390 (693)
...+++|++|++++|.+... + .+..+++|+.|++++|.+.+. + .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~--~~~~l~~L~ 88 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------A--PLKNLTKIT 88 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------G--GGTTCCSCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------h--hHccCCCCC
Confidence 34566777777777777643 2 466777777777777766532 1 156667777
Q ss_pred EEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCC
Q 037315 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSP 470 (693)
Q Consensus 391 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (693)
+|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++..+ +..
T Consensus 89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------------- 149 (308)
T 1h6u_A 89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------------- 149 (308)
T ss_dssp EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence 777777777643 3577777777777777777743 2 27777777777777777765433 222
Q ss_pred chhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCc
Q 037315 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTG 550 (693)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 550 (693)
+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 150 ----------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 150 ----------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 4567778888887775433 7777888888888888876
Q ss_pred cCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315 551 LIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598 (693)
Q Consensus 551 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 598 (693)
+.+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 643 7777888888888888875543 6777888888888888765
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=194.36 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=168.5
Q ss_pred CCCCEEEccCccccccCchhh--hhcCCCCCEEEccCCcccccCCCCC--CCCCCCCEEEccCCcCcccCC----hhhhh
Q 037315 120 HDLEDVHFSRIQMNGEFPNWL--LENNTKLRQLSLVNDSLAGPFRLPI--HSHRHLRLLDVSNNNFQGHIP----VEIGD 191 (693)
Q Consensus 120 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~----~~~~~ 191 (693)
..++.+.+.++.+.......+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 356777777776653211111 1245679999999999998888777 889999999999999986544 2223
Q ss_pred cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccc--cch-HHhhCCCCCcEEEccccccccccCc---cCCC
Q 037315 192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE--IPE-HLAMGCVNLEFLALSNNSLKGHMFS---RNFN 265 (693)
Q Consensus 192 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~ 265 (693)
.+++|++|++++|.+.+..+..|+++++|++|++++|++.+. ++. .....+++|++|++++|+++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999888888899999999999999987642 221 2224578899999999988643221 2456
Q ss_pred CCCCCeEeccCccccccCCcCCcCC---CCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCC
Q 037315 266 LINLRWLQLEGNHFVGEIPQSLSKC---SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ 342 (693)
Q Consensus 266 l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 342 (693)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7888999999988887767666665 68888888888888 5566553 6888888888888754 22 56778888
Q ss_pred EEECcCCcCC
Q 037315 343 ILDISDNNIS 352 (693)
Q Consensus 343 ~L~l~~n~~~ 352 (693)
.|++++|.++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888888775
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.6e-21 Score=190.33 Aligned_cols=192 Identities=24% Similarity=0.369 Sum_probs=110.3
Q ss_pred CCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEc
Q 037315 290 CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHL 369 (693)
Q Consensus 290 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 369 (693)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+.
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--------------- 100 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------------- 100 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---------------
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc---------------
Confidence 3344444444444432 11 23444444444444444443322 45555566666655555421
Q ss_pred cCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 449 (693)
Q Consensus 370 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 449 (693)
+ .+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 101 ---------~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 101 ---------S--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp ---------G--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ---------h--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 0 344455556666666655532 2 25566666666666666654322 5566666666666666654
Q ss_pred cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc
Q 037315 450 LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529 (693)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 529 (693)
..+ +.. +++|+.|++++|++++..+
T Consensus 166 ~~~--l~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 166 LTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCCGG
T ss_pred Chh--hcC-----------------------------------------------------CCCCCEEECCCCccCcChh
Confidence 332 222 4467777777777765433
Q ss_pred hhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7778888888888888887643 7788888888888888874
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7.8e-23 Score=213.36 Aligned_cols=239 Identities=19% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCCCcEEEccCCcccccCC----ccCCCCCCCCEEEcccCc---cccccchHH------hhCCCCCcEEEcccccccc--
Q 037315 193 LPRLISFNISMNALDGSIP----SSFGNMNLLQILDLSNNQ---LTGEIPEHL------AMGCVNLEFLALSNNSLKG-- 257 (693)
Q Consensus 193 l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~l~~n~l~~-- 257 (693)
+++|++|++++|.++...+ ..+.++++|++|++++|. +.+.+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3445555555554443221 224445555555555532 222333332 1234555555555555544
Q ss_pred --ccCccCCCCCCCCeEeccCccccccCCcCC----cCC---------CCCCEEeccCCcccc-cCC---ccccCCCCCc
Q 037315 258 --HMFSRNFNLINLRWLQLEGNHFVGEIPQSL----SKC---------SSLEGLYLNNNSLSG-KIP---RWLGNLTWLI 318 (693)
Q Consensus 258 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~i~~-~~~---~~l~~l~~L~ 318 (693)
..+..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|.++. ..+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 223333444555555555554432221111 112 455555555555541 122 2334445555
Q ss_pred EEEccCCcccc-----CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEe
Q 037315 319 HIIMPKNHLEG-----PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLD 393 (693)
Q Consensus 319 ~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 393 (693)
+|++++|.+.. ..+..+..+++|+.|++++|.+.... ...++. .+..+++|++|+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~~~~~L~~L~ 250 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALKSWPNLRELG 250 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGGGCTTCCEEE
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHccCCCcCEEE
Confidence 55555555441 12224455555555555555543100 012222 456667777777
Q ss_pred CcCcccCCC----cchhhhC--CCCCCEEEccCCcccc----cCCccc-CCCCCCCEEEccCCcCcccC
Q 037315 394 LSYNLLNGS----IPDWIDG--LSQLSHLILGNNNLEG----EVPVQL-CGLNQLQLLDLSNNNLHGLI 451 (693)
Q Consensus 394 L~~n~i~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~ 451 (693)
+++|.+++. ++.++.. +++|++|++++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 777777644 3445533 7777777777777775 355555 55777888888887776543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.9e-20 Score=188.41 Aligned_cols=243 Identities=19% Similarity=0.142 Sum_probs=168.5
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE-EEc
Q 037315 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF-LAL 250 (693)
Q Consensus 172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l 250 (693)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56788888888 788765 3578888888888886666678888888888888888765677777767777665 455
Q ss_pred cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccC-CcccccCCccccCCCCCcEEEccCCcccc
Q 037315 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTWLIHIIMPKNHLEG 329 (693)
Q Consensus 251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 329 (693)
++|++..+.+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------------------- 146 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------------------- 146 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT---------------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc---------------------
Confidence 56777777777777777777777777777655444444455555666544 23332222
Q ss_pred CccccccCCC-CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh
Q 037315 330 PIPVEFCHLY-SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID 408 (693)
Q Consensus 330 ~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 408 (693)
..|..+. .++.|++++|++....+..+...+++++++.++...+.++...|..+++|++|++++|+++...+..
T Consensus 147 ---~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 147 ---NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp ---TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred ---cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 2333332 4566666666666555555666667777776544446777778999999999999999998554443
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 037315 409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446 (693)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 446 (693)
+.+|+.|.+.++.-....| .+..+++|+.+++.++.
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 5567777766665444566 48889999999997643
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=178.97 Aligned_cols=157 Identities=24% Similarity=0.271 Sum_probs=138.2
Q ss_pred CcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCC
Q 037315 389 LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS 467 (693)
Q Consensus 389 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~ 467 (693)
-+.+++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|++|++++|+++++.+..|..
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------- 79 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------- 79 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence 3589999999984 565443 467899999999997754 45889999999999999999888877766
Q ss_pred CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 547 (693)
+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 80 -------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 80 -------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred -------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 5589999999999998888889999999999999999
Q ss_pred CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
++++.|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.|.++
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999999999999998889999999999999999999998765
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.8e-20 Score=189.05 Aligned_cols=223 Identities=20% Similarity=0.118 Sum_probs=129.7
Q ss_pred CCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCE-EECcCCcCCCCCCCCCCCCcccEEEc
Q 037315 292 SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQI-LDISDNNISGSLPSCFHPLSITQVHL 369 (693)
Q Consensus 292 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~~~L~~L~l 369 (693)
++++|++++|+++...+.+|.++++|++|++++|++.+.++ .+|.+++++++ +.+++|++.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~----------------- 93 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL----------------- 93 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-----------------
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-----------------
Confidence 45555555555543333444555555555555555433222 33455555443 233334443
Q ss_pred cCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccC-CcccccCCcccCCCC-CCCEEEccCCcC
Q 037315 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN-NNLEGEVPVQLCGLN-QLQLLDLSNNNL 447 (693)
Q Consensus 370 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 447 (693)
.++...|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|++
T Consensus 94 -------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 94 -------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp -------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred -------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 22222566666677777777766655555555556666676654 455555555566554 577788888887
Q ss_pred cccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCC-Ccccc
Q 037315 448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC-NKLIG 526 (693)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~ 526 (693)
+.+.+..|.. .+|++|++++ |.++.
T Consensus 167 ~~i~~~~f~~------------------------------------------------------~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 167 QEIHNSAFNG------------------------------------------------------TQLDELNLSDNNNLEE 192 (350)
T ss_dssp CEECTTSSTT------------------------------------------------------EEEEEEECTTCTTCCC
T ss_pred cCCChhhccc------------------------------------------------------cchhHHhhccCCcccC
Confidence 7666655533 2477778764 55665
Q ss_pred cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcC
Q 037315 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596 (693)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 596 (693)
+.+..|..+++|++|+|++|+++.+++..|.++ +.|.+.++.-...+| .+..+++|+.++++++.-
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred CCHHHhccCcccchhhcCCCCcCccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 555567888888888888888887766655544 444444443333555 367788888888876543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2e-20 Score=192.72 Aligned_cols=178 Identities=28% Similarity=0.298 Sum_probs=104.4
Q ss_pred cEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315 365 TQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID-GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443 (693)
Q Consensus 365 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 443 (693)
+.++++++.+. .+|. .+ .+.++.|+|++|.+++..+..+. ++++|++|++++|++++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 45666666553 2333 11 23466666666666655555555 66666666666666665555566666666666666
Q ss_pred CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315 444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523 (693)
Q Consensus 444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 523 (693)
+|++.++.+..|.. +++|++|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSD-----------------------------------------------------LQALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCC-----------------------------------------------------CcCCCEEECCCCc
Confidence 66666555555443 3356666666666
Q ss_pred ccccCchhhccCCCCCeeeCCCccCCccCcccc---cCCCCCCEEeCCCccccccCCcccccCCC--CCEEecCCCcCcc
Q 037315 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF---SNLKQIESLDLSYNKLNGKIPHQLVELKE--LAVFSVAYNNLSG 598 (693)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~ 598 (693)
+.+..+..|..+++|++|+|++|+++++.+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.|
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 666656666666666666666666666555444 44666666666666666554455555554 2556666666655
Q ss_pred c
Q 037315 599 E 599 (693)
Q Consensus 599 ~ 599 (693)
.
T Consensus 204 ~ 204 (361)
T 2xot_A 204 D 204 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.2e-20 Score=173.39 Aligned_cols=162 Identities=27% Similarity=0.299 Sum_probs=139.6
Q ss_pred CCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccC
Q 037315 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYN 465 (693)
Q Consensus 386 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~ 465 (693)
.++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK-------- 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence 368899999999998777777888999999999999998777777889999999999999998777766655
Q ss_pred CCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCC
Q 037315 466 NSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSH 545 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 545 (693)
+++|++|++++|++++..+..|..+++|++|++++
T Consensus 99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 55899999999999987777789999999999999
Q ss_pred ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315 546 NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF 607 (693)
Q Consensus 546 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 607 (693)
|+++++.+..|..+++|++|++++|++.+ .+++|+.|+++.|.++|.+|++++.+
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 99998888889999999999999998864 45688999999999999999876544
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.1e-19 Score=170.88 Aligned_cols=114 Identities=25% Similarity=0.299 Sum_probs=58.8
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|++|+|++|++.+..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 45555555555554445555555555555555555554444445555555555555555554445555555555555555
Q ss_pred CCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 593 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
+|++++..+..+..+.++..+++++||+.|+|++
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 5555544444444444555555555555555443
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=170.58 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=79.9
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 590 (693)
+++|++|++++|++++..+..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 44667777777777666666667777777777777777766666677777777777777777766666666777777777
Q ss_pred cCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 591 VAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 591 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
+++|++++..|..+..+.++..+++++||+.|+|+.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 777777766666666666666677777777776653
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=8.7e-19 Score=167.77 Aligned_cols=157 Identities=27% Similarity=0.259 Sum_probs=136.0
Q ss_pred CCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCC
Q 037315 388 SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS 467 (693)
Q Consensus 388 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~ 467 (693)
.-+.++.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++..+.+..|..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 4678999999887 4554443 88999999999999888888999999999999999998777776655
Q ss_pred CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 547 (693)
+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 87 -------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 87 -------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 5589999999999998877788999999999999999
Q ss_pred CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315 548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601 (693)
Q Consensus 548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 601 (693)
++.+ |..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 124 l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9954 7788999999999999999998777888999999999999999998765
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.5e-19 Score=191.78 Aligned_cols=187 Identities=27% Similarity=0.337 Sum_probs=123.9
Q ss_pred CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEcc
Q 037315 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419 (693)
Q Consensus 340 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 419 (693)
+++.|++++|.+.+ +|..+ +++|+.|++++|.+. .+| ..+++|+.|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44455555544443 22211 234555555555543 333 235778888888888875 555 544 78888888
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeec
Q 037315 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT 499 (693)
Q Consensus 420 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (693)
+|++++ +|. .+++|+.|++++|.++++.+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~------------------------------------------ 158 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----L------------------------------------------ 158 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----C------------------------------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----c------------------------------------------
Confidence 888875 444 57788888888888776322 1
Q ss_pred ccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCC-------CEEeCCCccc
Q 037315 500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI-------ESLDLSYNKL 572 (693)
Q Consensus 500 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l 572 (693)
+++|++|++++|++++ +|. |. ++|+.|+|++|+|+.+ |. |.. +| +.|+|++|+|
T Consensus 159 -----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 159 -----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCC
T ss_pred -----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcc
Confidence 4468888888888876 454 55 7888888888888855 33 544 66 8888888888
Q ss_pred cccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF 607 (693)
Q Consensus 573 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 607 (693)
+ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 8 567777778888888888888888777655443
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4e-19 Score=182.91 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=49.3
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccc---ccCCCCCEE
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL---VELKELAVF 589 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L 589 (693)
+|++|+|++|++.+..+..|..+++|++|+|++|+++++.|..|.++++|+.|+|++|++++..+..+ ..+++|+.|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 44445555554444444444444455555555555444444444444555555555554443332222 234444555
Q ss_pred ecCCCcCcccCCCCccccCc--CCcccccCccCCCCC
Q 037315 590 SVAYNNLSGEIPEWKAQFAT--FNENSYEGNTFLCGL 624 (693)
Q Consensus 590 ~l~~N~l~~~~p~~~~~~~~--l~~~~~~~n~~~c~~ 624 (693)
++++|+++...+..+..++. +..+.+.+||+.|+|
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 55555444322222222222 133444445554444
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.2e-18 Score=164.43 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=15.6
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCEEEcccCccc
Q 037315 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231 (693)
Q Consensus 195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 231 (693)
++++|++++|.+++..+..|.++++|++|++++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC
Confidence 4444444444444333333344444444444444443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.9e-18 Score=165.45 Aligned_cols=153 Identities=29% Similarity=0.342 Sum_probs=87.3
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443 (693)
Q Consensus 364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 443 (693)
.+.++.+++.+. .+|... .++|+.|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 445555555552 333211 2556666666666665555556666666666666666654444555566666666666
Q ss_pred CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315 444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523 (693)
Q Consensus 444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 523 (693)
+|++++..+..|.. +++|++|++++|+
T Consensus 97 ~N~l~~l~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 97 TNQLTVLPSAVFDR-----------------------------------------------------LVHLKELFMCCNK 123 (229)
T ss_dssp SSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCcCCccChhHhCc-----------------------------------------------------chhhCeEeccCCc
Confidence 66665555544433 3356666666666
Q ss_pred ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
+. .+|..+..+++|++|+|++|+++++.+..|..+++|+.|++++|++.+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 65 445555666666666666666665555556666666666666666553
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.4e-18 Score=170.10 Aligned_cols=174 Identities=24% Similarity=0.360 Sum_probs=132.6
Q ss_pred ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315 335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414 (693)
Q Consensus 335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 414 (693)
+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~------------------------~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~ 93 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV------------------------Q--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC------------------------T--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC------------------------h--hHhcCCCCCEEEccCCccCCCcc--cccCCCCC
Confidence 34567788888888776522 2 45667888888888888875544 78888888
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315 415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF 494 (693)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (693)
+|++++|++++ . ..+..+++|++|++++|++.+. ..+..
T Consensus 94 ~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~------------------------------------- 132 (291)
T 1h6t_A 94 WLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVH------------------------------------- 132 (291)
T ss_dssp EEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGG-------------------------------------
T ss_pred EEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcC-------------------------------------
Confidence 88888888874 2 3478888888888888887753 12222
Q ss_pred eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
+++|+.|++++|++++. ..+..+++|++|++++|+++++.+ +..+++|+.|++++|++++
T Consensus 133 ----------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 133 ----------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ----------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ----------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 55788888888888865 578888899999999998887755 8888899999999998875
Q ss_pred cCCcccccCCCCCEEecCCCcCccc
Q 037315 575 KIPHQLVELKELAVFSVAYNNLSGE 599 (693)
Q Consensus 575 ~~~~~l~~l~~L~~L~l~~N~l~~~ 599 (693)
. + .+..+++|+.|++++|+++..
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred C-h-hhccCCCCCEEECcCCcccCC
Confidence 4 3 478888999999999988753
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.7e-18 Score=169.05 Aligned_cols=190 Identities=24% Similarity=0.298 Sum_probs=149.7
Q ss_pred CCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCc
Q 037315 293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372 (693)
Q Consensus 293 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 372 (693)
+..+.+..+.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|++.+.
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~------------------ 83 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI------------------ 83 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC------------------
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC------------------
Confidence 34445666665533 2345788999999999999865 3488899999999999988732
Q ss_pred ccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP 452 (693)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 452 (693)
+ .+..+++|++|++++|.+++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 84 ------~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 84 ------K--PLANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp ------G--GGTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred ------c--ccccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--
Confidence 1 25677888888888888875 3 3488889999999999988853 4678889999999999988764
Q ss_pred CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 532 (693)
..+.. +++|++|++++|++.+..+ +
T Consensus 150 ~~l~~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 150 TVLSR-----------------------------------------------------LTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp GGGGG-----------------------------------------------------CTTCSEEECCSSCCCCCGG--G
T ss_pred hhhcc-----------------------------------------------------CCCCCEEEccCCccccchh--h
Confidence 22222 5689999999999987655 8
Q ss_pred ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc
Q 037315 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575 (693)
Q Consensus 533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 575 (693)
..+++|++|++++|.++++ + .+..+++|+.|++++|++...
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 8999999999999999986 3 489999999999999999853
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.4e-17 Score=154.60 Aligned_cols=136 Identities=23% Similarity=0.367 Sum_probs=108.8
Q ss_pred CcceEECCCCcccccCch-hhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315 513 LLSGLDLSCNKLIGHIPP-QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 591 (693)
++++|++++|++.+..+. .|..+++|++|+|++|+++++.|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 578888888888766654 4788888888888888888888888888888888888888888888877888888888888
Q ss_pred CCCcCcccCCCCccccCcCCcccccCccCCCCCCCC----------------CCCCCCCCCccccccccCCCC
Q 037315 592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP----------------ICRSPTTMSEASIENERDDNL 648 (693)
Q Consensus 592 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~~~ 648 (693)
++|++++..|..+..+.++..+++++|++.|+|+.. .|..|....+..+.+...+.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~ 182 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhc
Confidence 888888888887778888888888888888887652 488888777776666665554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.5e-18 Score=185.42 Aligned_cols=63 Identities=29% Similarity=0.275 Sum_probs=33.9
Q ss_pred ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 449 (693)
Q Consensus 383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 449 (693)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++.+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence 44555666666666655532 2455555566666666555532 235555555555555555543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.7e-18 Score=156.58 Aligned_cols=154 Identities=18% Similarity=0.290 Sum_probs=127.7
Q ss_pred cCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315 384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES 463 (693)
Q Consensus 384 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~ 463 (693)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 56788999999999988 445 5888999999999999776 3347888999999999999998766666654
Q ss_pred cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeC
Q 037315 464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNL 543 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 543 (693)
+++|++|++++|++++..+..+..+++|++|++
T Consensus 111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 558999999999999888889999999999999
Q ss_pred CCcc-CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315 544 SHNN-LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598 (693)
Q Consensus 544 s~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 598 (693)
++|. ++.+ | .+..+++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus 144 ~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9998 7655 4 688999999999999999863 3 78899999999999999764
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=156.47 Aligned_cols=134 Identities=23% Similarity=0.367 Sum_probs=116.4
Q ss_pred cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591 (693)
Q Consensus 512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 591 (693)
+++++|++++|+++ .+|..|..+++|++|+|++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46999999999998 66789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccCCCCccccCcCCcccccCccCCCCCCCC----------------CCCCCCCCCccccccccCC
Q 037315 592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP----------------ICRSPTTMSEASIENERDD 646 (693)
Q Consensus 592 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~ 646 (693)
++|+++...+..+..+.++..+++++||+.|+|+.. .|..|....+..+.....+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~ 180 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSK 180 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChH
Confidence 999999877777888999999999999999998652 3666665555544444433
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=6.3e-17 Score=174.24 Aligned_cols=179 Identities=25% Similarity=0.351 Sum_probs=107.3
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEc
Q 037315 146 KLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDL 225 (693)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 225 (693)
++++|++++|.+++ ++..+ +++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66666666666654 33333 256677777777666 555 225667777777776664 444 443 6777777
Q ss_pred ccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccc
Q 037315 226 SNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 305 (693)
Q Consensus 226 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 305 (693)
++|.++ .+|. .+++|++|++++|.++++. . .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLTMLP-E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccCcCC-C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 777766 3555 3666777777777766532 2 45667777777776664 444 44 66777777777666
Q ss_pred cCCccccCCCCC-------cEEEccCCccccCccccccCCCCCCEEECcCCcCCCC
Q 037315 306 KIPRWLGNLTWL-------IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGS 354 (693)
Q Consensus 306 ~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 354 (693)
.+|. +.. +| +.|++++|.+.. +|..+..+++|+.|++++|.+.+.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 3444 333 45 666666666663 455555566666666666666543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.2e-17 Score=163.23 Aligned_cols=168 Identities=21% Similarity=0.253 Sum_probs=132.3
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443 (693)
Q Consensus 364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 443 (693)
+..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 333444444443222 45678899999999998884 44 68889999999999999986544 8889999999999
Q ss_pred CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315 444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523 (693)
Q Consensus 444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 523 (693)
+|++++..+... ++|+.|++++|+
T Consensus 94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~ 117 (263)
T 1xeu_A 94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE 117 (263)
T ss_dssp SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence 998876433111 368999999999
Q ss_pred ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI 600 (693)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 600 (693)
+++. ..+..+++|++|++++|+++++ ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 118 l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 118 LRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9864 3588999999999999999887 3688899999999999999876 67888999999999999998663
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.3e-17 Score=169.40 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=49.2
Q ss_pred CcceEECCCCcccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 590 (693)
+|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5566666555 5555556666666666 666666 56666666666677777777666666666666666666666664
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3e-17 Score=178.93 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=105.8
Q ss_pred CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324 (693)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 324 (693)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444555555554322 3456777777777777763 23 46667777777777777664433 56666666666666
Q ss_pred CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcc
Q 037315 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP 404 (693)
Q Consensus 325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 404 (693)
|.+.+. ..+..+++|+.|++++|.+.+ ++ .+..+++|+.|+|++|.+.+.
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--
Confidence 666542 245556666666666665542 11 456677777777777777754
Q ss_pred hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc
Q 037315 405 DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450 (693)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 450 (693)
..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++.+.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 457777777777777777775544 67777777777777776653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.7e-17 Score=153.92 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=52.3
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|++|+|++|++++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 45555555555555555555555566666666666665555555566666666666666665555556666666666666
Q ss_pred CCcCcccCC
Q 037315 593 YNNLSGEIP 601 (693)
Q Consensus 593 ~N~l~~~~p 601 (693)
+|+++|.++
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 666655444
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.8e-17 Score=151.25 Aligned_cols=154 Identities=20% Similarity=0.325 Sum_probs=119.2
Q ss_pred cCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCE
Q 037315 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH 415 (693)
Q Consensus 336 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 415 (693)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~------------------------~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------------------------DLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS------------------------CCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc------------------------ChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCE
Confidence 45566777777777665 222 45677888999999887653 346888999999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccccee
Q 037315 416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF 495 (693)
Q Consensus 416 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (693)
|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-------------------------------------- 134 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-------------------------------------- 134 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT--------------------------------------
T ss_pred EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh--------------------------------------
Confidence 999999998777888889999999999999887655554443
Q ss_pred eeecccceeeeccccccCcceEECCCCc-ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNK-LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574 (693)
Q Consensus 496 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 574 (693)
+++|++|++++|+ +. .+| .+..+++|++|++++|.++++. .+..+++|+.|++++|++.+
T Consensus 135 ---------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 ---------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred ---------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 5589999999998 55 444 6889999999999999998763 78899999999999999863
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.3e-15 Score=157.66 Aligned_cols=266 Identities=15% Similarity=0.173 Sum_probs=178.4
Q ss_pred CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII 321 (693)
Q Consensus 242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 321 (693)
+..++.+.+.. .++.+....|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~------------ 174 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED------------ 174 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSS------------
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHH------------
Confidence 45566666543 3444444555553 5666665544 443444445443 455555543 33333334
Q ss_pred ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCC
Q 037315 322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401 (693)
Q Consensus 322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 401 (693)
+|.+|++|+.+++.+|++.......|...+|+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.
T Consensus 175 ------------aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 175 ------------IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp ------------TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred ------------HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence 444555555555555544444444444445555555433 2 3566668999999999999875 555
Q ss_pred CcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-----ccCCCCcccCccccccCCCCCCchhhhH
Q 037315 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH-----GLIPPCFDNTKLHESYNNSSSPDEQFKI 476 (693)
Q Consensus 402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (693)
+...+|.+ .+|+.+.+ .+.++.....+|.++++|+.+++.+|.+. .+.+.+|..
T Consensus 240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~------------------- 298 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG------------------- 298 (401)
T ss_dssp ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence 66677887 78999999 45567677888999999999999887765 344555554
Q ss_pred hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccc
Q 037315 477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF 556 (693)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 556 (693)
+++|+.+++.+ .+..+....|.++++|+.++|..| ++.+.+.+|
T Consensus 299 ----------------------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 299 ----------------------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp ----------------------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred ----------------------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 44788888884 577777788999999999999654 777888899
Q ss_pred cCCCCCCEEeCCCccccccCCcccccCC-CCCEEecCCCcCc
Q 037315 557 SNLKQIESLDLSYNKLNGKIPHQLVELK-ELAVFSVAYNNLS 597 (693)
Q Consensus 557 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~ 597 (693)
.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 999 999999999988877777888875 7888888877654
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.3e-19 Score=196.49 Aligned_cols=76 Identities=26% Similarity=0.208 Sum_probs=36.6
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccC-cccccCCCCCCEEeCCCccccccCCcc---cccCCCCCE
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLI-PSTFSNLKQIESLDLSYNKLNGKIPHQ---LVELKELAV 588 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~ 588 (693)
+|+.|+|++|++++ +| .++.+++|++|+|++|++++++ |..+.++++|+.|+|++|++++.+|.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 44444444444443 23 4455555555555555555554 555555555555555555555433321 223455555
Q ss_pred Ee
Q 037315 589 FS 590 (693)
Q Consensus 589 L~ 590 (693)
|+
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.2e-15 Score=159.06 Aligned_cols=323 Identities=15% Similarity=0.169 Sum_probs=151.3
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272 (693)
Q Consensus 193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 272 (693)
+.+|+++.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +..+....|.++..++..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 44444444432 233333444445555555554432 22 344444444445544443322 223333334333322222
Q ss_pred eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352 (693)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 352 (693)
.... .......+|.++++|+.+.+.++.. ......|.++++|+.+.+..+ +..+...+|.++..|+.+.+..+...
T Consensus 146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 146 IPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 1111 1112234455555566555554322 233445555555665555544 23233445556666666555443321
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432 (693)
Q Consensus 353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (693)
.....+....++.+.+.... ..+....|.++..++.+.+..+... ....+|..+..++.+......+ ....|.
T Consensus 222 -i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~ 294 (394)
T 4fs7_A 222 -LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFY 294 (394)
T ss_dssp -ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred -eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccc
Confidence 12222333445555443321 1233345666666666666655433 4445566666666666555432 223455
Q ss_pred CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512 (693)
Q Consensus 433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (693)
++.+|+.+.+.++ +..+...+|.. ..
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~-----------------------------------------------------c~ 320 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFES-----------------------------------------------------CT 320 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTT-----------------------------------------------------CT
T ss_pred ccccccccccccc-cceechhhhcC-----------------------------------------------------CC
Confidence 6666666666543 33344444443 22
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCE
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAV 588 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 588 (693)
+|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++++|+.
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 4555555432 44444555666666666666544 55555556666666666666543 22 12334555555443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=6.7e-17 Score=164.16 Aligned_cols=287 Identities=15% Similarity=0.119 Sum_probs=149.9
Q ss_pred CCCCCEEEccCCcccccCCCCCCC-CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCC------
Q 037315 144 NTKLRQLSLVNDSLAGPFRLPIHS-HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGN------ 216 (693)
Q Consensus 144 ~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 216 (693)
+.++++|.++++--... ...+.. +++|++|||++|++. ...... ..++.++.+.+..+. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeE-EecCcc-ccccccccccccccc---cCHHHhcccccccc
Confidence 45677787776421111 111222 667777777777765 110000 012223444444443 23345666
Q ss_pred --CCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccc----cccCCcCCcCC
Q 037315 217 --MNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF----VGEIPQSLSKC 290 (693)
Q Consensus 217 --l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l 290 (693)
+++|+.|++.+ .++ .++...|.+|++|+++++++|.+..+.+..|..+.++..+....+.. ......+|..+
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 666 67777777777777777777777776667777666666665554221 11223344455
Q ss_pred CCCC-EEeccCCccc-ccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEE
Q 037315 291 SSLE-GLYLNNNSLS-GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQV 367 (693)
Q Consensus 291 ~~L~-~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L 367 (693)
..|+ .+.+...... ......-....+++.+.+.++-...........+++|+.+++++|++.......|. +.+|+++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5555 3333322100 00000001123344444443311111001111356677777776666644444443 4455555
Q ss_pred EccCcccccccCcccccCCCCCc-EEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315 368 HLSKNMLHGQLKGGTFFNCSSLV-TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD 441 (693)
Q Consensus 368 ~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 441 (693)
++.+| + ..++..+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.++++|+.++
T Consensus 256 ~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55554 2 345555666676676 676666 55545556666677777777666666666666666666666664
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=3.6e-15 Score=154.42 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=128.1
Q ss_pred CCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEcc
Q 037315 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP 323 (693)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 323 (693)
+|+.+.+..+ +..+....|.++ +|+.+.+.+ .+......+|.+|++|+.+++.+|.++......|. +++|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444332 333333334332 344444443 33333334455555555555555544433333333 3455555554
Q ss_pred CCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCc
Q 037315 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI 403 (693)
Q Consensus 324 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 403 (693)
.+ +..+...+|.++++|+.+++..+ +... +..+|.+ .+|+.+.+. +.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I------------------------~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI------------------------GQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEE------------------------CTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCc------------------------ccccccc-CCccEEEeC-CCccEEC
Confidence 32 33344455666666666666543 2212 2223333 344444442 2233233
Q ss_pred chhhhCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhh
Q 037315 404 PDWIDGLSQLSHLILGNNNLE-----GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILF 478 (693)
Q Consensus 404 ~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (693)
..+|.+|++|+.+.+.++.+. .....+|.+|++|+.+++.+ .+..+...+|..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~--------------------- 321 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG--------------------- 321 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT---------------------
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC---------------------
Confidence 444555555555555444432 34455566666666666663 355555555554
Q ss_pred hhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccC
Q 037315 479 SIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN 558 (693)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 558 (693)
+.+|+.+++..+ ++.+...+|.++ +|+.+++++|.+..+.+..|.+
T Consensus 322 --------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 322 --------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp --------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred --------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 235666666443 555666778888 8888888888888777788888
Q ss_pred CC-CCCEEeCCCcccc
Q 037315 559 LK-QIESLDLSYNKLN 573 (693)
Q Consensus 559 l~-~L~~L~Ls~N~l~ 573 (693)
++ +++.|++..+.+.
T Consensus 368 ~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 368 FPDDITVIRVPAESVE 383 (401)
T ss_dssp SCTTCCEEEECGGGHH
T ss_pred CCCCccEEEeCHHHHH
Confidence 74 7888888877654
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.5e-16 Score=155.54 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=113.1
Q ss_pred CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII 321 (693)
Q Consensus 242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 321 (693)
+.++..++++++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555666666666543 35566667777777776663 33 45666666666666666664333 55666666666
Q ss_pred ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCC
Q 037315 322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401 (693)
Q Consensus 322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 401 (693)
+++|++.+..+ +.. ++|+.|++++|++. + ++ .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCC
Confidence 66666554221 112 55555555555544 3 22 57788899999999998885
Q ss_pred CcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC
Q 037315 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI 451 (693)
Q Consensus 402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 451 (693)
. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++....
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 4 3 688889999999999998865 66888899999999999887653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.2e-16 Score=140.83 Aligned_cols=88 Identities=24% Similarity=0.269 Sum_probs=62.8
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCC---cccccCCCC
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIP---HQLVELKEL 586 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L 586 (693)
+++|++|++++|++.+..|..+..+++|++|++++|.++++.+ ..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 3456666666666665566666677778888888887776532 677778888888888888876555 467778888
Q ss_pred CEEecCCCcCcc
Q 037315 587 AVFSVAYNNLSG 598 (693)
Q Consensus 587 ~~L~l~~N~l~~ 598 (693)
++|++++|++..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 888888887763
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=140.63 Aligned_cols=91 Identities=27% Similarity=0.316 Sum_probs=68.8
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 590 (693)
+++|++|+|++|++++..+..|.++++|++|+|++|+++++.+..|.++++|++|+|++|+++...+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 34566666666666666666777777888888888888877777788888888888888888866666777888888888
Q ss_pred cCCCcCcccCC
Q 037315 591 VAYNNLSGEIP 601 (693)
Q Consensus 591 l~~N~l~~~~p 601 (693)
+++|++.|.+.
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 88888876543
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=2.2e-14 Score=149.50 Aligned_cols=318 Identities=11% Similarity=0.069 Sum_probs=210.3
Q ss_pred cccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCC
Q 037315 205 ALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIP 284 (693)
Q Consensus 205 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 284 (693)
.++.+...+|.++.+|+.+.+..+ ++ .++..+|.+|.+|+.+++..+ ++.+....|.++.+|+.+.+..+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 355566778999999999999754 66 788888888999999999754 66777788889999998887654 443555
Q ss_pred cCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCc
Q 037315 285 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLS 363 (693)
Q Consensus 285 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~ 363 (693)
.+|..+..++....... ......+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +.......+. +..
T Consensus 134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 67777654444333332 22445678888899999887654 3355567888888888888665 3322222222 444
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443 (693)
Q Consensus 364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 443 (693)
|+.+.+..+.. .+.. .+..+.+|+.+.+.... +.....+|.++..++.+.+..+... .....|..+..++.+...
T Consensus 210 L~~i~~~~~~~--~i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 210 LENMEFPNSLY--YLGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCBCCCCTTCC--EECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred cceeecCCCce--Eeeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 55554444322 1111 22233455555554332 2233345555666666666554333 444455556666655554
Q ss_pred CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315 444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523 (693)
Q Consensus 444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 523 (693)
...+ ...+|.. ..+|+.+.+.++
T Consensus 285 ~~~i---~~~~F~~-----------------------------------------------------~~~L~~i~l~~~- 307 (394)
T 4fs7_A 285 SVIV---PEKTFYG-----------------------------------------------------CSSLTEVKLLDS- 307 (394)
T ss_dssp SSEE---CTTTTTT-----------------------------------------------------CTTCCEEEECTT-
T ss_pred ceee---ccccccc-----------------------------------------------------cccccccccccc-
Confidence 4321 1122222 457888888765
Q ss_pred ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCC
Q 037315 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594 (693)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 594 (693)
+..+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66677788999999999999754 77788899999999999999887 77788889999999999998754
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.3e-16 Score=140.74 Aligned_cols=138 Identities=28% Similarity=0.261 Sum_probs=114.2
Q ss_pred CCCCCcEEeCcCcccC-CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315 385 NCSSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES 463 (693)
Q Consensus 385 ~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~ 463 (693)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999987 56777788899999999999998865 67888999999999999988765554433
Q ss_pred cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccC-chhhccCCCCCeee
Q 037315 464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHI-PPQVGNLTRIQTLN 542 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 542 (693)
+++|++|++++|++++.. +..+..+++|++|+
T Consensus 94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 558999999999998653 27889999999999
Q ss_pred CCCccCCccCc---ccccCCCCCCEEeCCCccccccCCc
Q 037315 543 LSHNNLTGLIP---STFSNLKQIESLDLSYNKLNGKIPH 578 (693)
Q Consensus 543 Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 578 (693)
+++|.+++..+ ..+..+++|++|++++|.+. ..|+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999998866 58899999999999999987 4443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.2e-15 Score=137.91 Aligned_cols=91 Identities=26% Similarity=0.302 Sum_probs=70.7
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 590 (693)
+++|++|++++|++++..+..|..+++|++|++++|+++++++..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34677777777777766666677788888888888888877777788888888888888888876666677788888888
Q ss_pred cCCCcCcccCC
Q 037315 591 VAYNNLSGEIP 601 (693)
Q Consensus 591 l~~N~l~~~~p 601 (693)
+++|++.|.+|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 88888887665
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=8.7e-16 Score=136.22 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=61.4
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc-CcccccCCCCCCEEeCCCccccccCC---cccccCCCC
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNGKIP---HQLVELKEL 586 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L 586 (693)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 44677777777777766677777788888888888888765 24677888888888888888876655 467778888
Q ss_pred CEEecCC
Q 037315 587 AVFSVAY 593 (693)
Q Consensus 587 ~~L~l~~ 593 (693)
+.|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 8887763
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.7e-15 Score=137.37 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=105.9
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 590 (693)
+++|++|++++|++.+..+..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 34799999999999988778899999999999999999999888899999999999999999988888889999999999
Q ss_pred cCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315 591 VAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 591 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
+++|++++..+..+..+..+..+++++|++.|+|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999997777666788999999999999999886
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=9.1e-16 Score=136.08 Aligned_cols=130 Identities=27% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCCCCcEEeCcCcccC-CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315 385 NCSSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES 463 (693)
Q Consensus 385 ~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~ 463 (693)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------ 86 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh------
Confidence 3478889999999887 56777788889999999999988865 67888999999999999888755544332
Q ss_pred cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc-CchhhccCCCCCeee
Q 037315 464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH-IPPQVGNLTRIQTLN 542 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 542 (693)
+++|++|++++|++++. .+..+..+++|++|+
T Consensus 87 -----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 87 -----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp -----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 55799999999998864 347789999999999
Q ss_pred CCCccCCccCc---ccccCCCCCCEEeCCC
Q 037315 543 LSHNNLTGLIP---STFSNLKQIESLDLSY 569 (693)
Q Consensus 543 Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~ 569 (693)
+++|.+++..+ ..+..+++|+.||+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998866 6788999999999874
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.9e-17 Score=179.42 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=120.8
Q ss_pred CCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCc-------------ccccCCccCCCCCCCCEEE-cccCccc
Q 037315 166 HSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNA-------------LDGSIPSSFGNMNLLQILD-LSNNQLT 231 (693)
Q Consensus 166 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~ 231 (693)
..+++|+.|++++|+++ .+|..++. +++|++|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45666777777777776 66766665 5667777765543 3445556666777777777 5555433
Q ss_pred cccchHHhh-------CCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315 232 GEIPEHLAM-------GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304 (693)
Q Consensus 232 ~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 304 (693)
.++..... ....|+.|++++|.++++ |. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 22211100 123577777777777764 33 777777777777777777 56777777777777777777777
Q ss_pred ccCCccccCCCCCcEEEccCCccccCc-cccccCCCCCCEEECcCCcCCCCC
Q 037315 305 GKIPRWLGNLTWLIHIIMPKNHLEGPI-PVEFCHLYSLQILDISDNNISGSL 355 (693)
Q Consensus 305 ~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~ 355 (693)
+ +| .++.+++|++|++++|.+.+.. |..+..+++|+.|++++|.+.+..
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 5 45 6777777777777777777665 777777777777777777776443
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=6.4e-16 Score=172.99 Aligned_cols=163 Identities=23% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEEC
Q 037315 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346 (693)
Q Consensus 267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 346 (693)
+.++.|++.+|.+... +.. .++.++|+.+.+.+ +++..|.+. ..+..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 4567777777766632 221 23444455444432 223333333 34555666677777777
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc
Q 037315 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE 426 (693)
Q Consensus 347 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 426 (693)
++|.+....+..+.+.+|+.|+|++|.+. .+|. .+..+++|+.|+|++|.++ .+|..|.++++|++|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 77766532222223333333333333332 3332 4455555555555555555 44555555555555555555554 3
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCC
Q 037315 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPC 454 (693)
Q Consensus 427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 454 (693)
+|..|..+++|++|+|++|++++.+|..
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHH
Confidence 4444555555555555555555444433
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4.5e-16 Score=174.23 Aligned_cols=214 Identities=21% Similarity=0.205 Sum_probs=85.2
Q ss_pred CCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCC---------CCCCCC-CCCcccEEEccCcccccccCccccc
Q 037315 315 TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG---------SLPSCF-HPLSITQVHLSKNMLHGQLKGGTFF 384 (693)
Q Consensus 315 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~ 384 (693)
+.++.|++..|.+... +.. .++.++|+.+.+.+ ..+..+ ....|+.|+|++|.+. .++. .+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA-NIF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence 4577788877777643 222 23334444443322 112222 3556666777666664 4444 233
Q ss_pred CCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY 464 (693)
Q Consensus 385 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~ 464 (693)
.+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|..+++|++|+|++|.++. +|..|..
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~------- 314 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGN------- 314 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTS-------
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhc-------
Confidence 6666677777776666 55666666666777777777666 456666666667777777666653 3433443
Q ss_pred CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC-CCeeeC
Q 037315 465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR-IQTLNL 543 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L 543 (693)
+++|+.|+|++|.+++.+|..+..+.. +..|+|
T Consensus 315 ----------------------------------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 315 ----------------------------------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp ----------------------------------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 346666777777666666665544322 123566
Q ss_pred CCccCCccCcccccCCCCCCEEeCCCc--------cccccCCcccccCCCCCEEecCCCcCcc
Q 037315 544 SHNNLTGLIPSTFSNLKQIESLDLSYN--------KLNGKIPHQLVELKELAVFSVAYNNLSG 598 (693)
Q Consensus 544 s~n~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 598 (693)
++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|-+.+
T Consensus 349 ~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 349 RDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHCCCCCCCCC------C-----------------------------------------CCCG
T ss_pred ccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 66666665554 3455566665 3333333444455556666677776653
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.5e-14 Score=132.19 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=57.2
Q ss_pred ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCCc----ccccCCC
Q 037315 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPH----QLVELKE 585 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~ 585 (693)
+++|++|++++|++++..+..+..+++|++|++++|.++.+.+ ..+..+++|+.|++++|++.. .|. .+..+++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQ 141 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCc
Confidence 3355666666666665544445677777777777777765432 267777777777777777763 344 3777788
Q ss_pred CCEEecCCCcCcc
Q 037315 586 LAVFSVAYNNLSG 598 (693)
Q Consensus 586 L~~L~l~~N~l~~ 598 (693)
|++|++++|+...
T Consensus 142 L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 142 VRVLDFQKVKLKE 154 (176)
T ss_dssp CSEETTEECCHHH
T ss_pred cceeCCCcCCHHH
Confidence 8888888777653
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=1.8e-12 Score=134.88 Aligned_cols=322 Identities=13% Similarity=0.139 Sum_probs=155.8
Q ss_pred CcEEEccCCcccccCCccCCCCCCCCEEEcccCc---cccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ---LTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272 (693)
Q Consensus 196 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 272 (693)
|+++.+..+ ++.+...+|.++.+|+.+.+..+. ++ .+....|.++.+|+.+.+..+ +..+....|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 455555432 343444555555555555555442 33 455555555555555554432 344444555566666666
Q ss_pred eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352 (693)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 352 (693)
.+..+ +.......|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. ....+|..+.+++..........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 66433 22244445566666666666543 22233333432 45666665543322 33445666666666655444332
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432 (693)
Q Consensus 353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (693)
......+...... ......+.....+..+.+... +......+|.++..|+.+.+..+... ....+|.
T Consensus 219 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 219 AIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp BSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred cccceeecccccc-----------cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence 1111100000000 000001112223333333322 22233445666666666666544332 4445566
Q ss_pred CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512 (693)
Q Consensus 433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (693)
++++|+.+.+. +.+..+...+|..+ .
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c-----------------------------------------------------~ 311 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGC-----------------------------------------------------I 311 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTC-----------------------------------------------------T
T ss_pred cccccccccCC-CcccccCceeecCC-----------------------------------------------------C
Confidence 66666666664 33444444455442 2
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+.....|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 5666666543 44455567777777887777543 666667778888888888887776542 345566677777666
Q ss_pred CCcC
Q 037315 593 YNNL 596 (693)
Q Consensus 593 ~N~l 596 (693)
.|.+
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 5543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2e-14 Score=131.30 Aligned_cols=135 Identities=21% Similarity=0.184 Sum_probs=110.8
Q ss_pred cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315 382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH 461 (693)
Q Consensus 382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 461 (693)
.+..+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..|..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~---- 86 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA---- 86 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH----
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc----
Confidence 56778899999999999984 454334345999999999999965 67889999999999999998776554444
Q ss_pred cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCch--hhccCCCCC
Q 037315 462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP--QVGNLTRIQ 539 (693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~ 539 (693)
+++|++|++++|++.. +|. .+..+++|+
T Consensus 87 -------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 87 -------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLT 116 (176)
T ss_dssp -------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred -------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence 5689999999999974 454 788999999
Q ss_pred eeeCCCccCCccCcc---cccCCCCCCEEeCCCcccc
Q 037315 540 TLNLSHNNLTGLIPS---TFSNLKQIESLDLSYNKLN 573 (693)
Q Consensus 540 ~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~ 573 (693)
+|++++|.++...+. .+..+++|+.||+++|.+.
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999866433 4889999999999999876
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=3.7e-14 Score=128.37 Aligned_cols=109 Identities=25% Similarity=0.281 Sum_probs=77.3
Q ss_pred cceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCC
Q 037315 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAY 593 (693)
Q Consensus 514 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 593 (693)
.+.+++++|+++. +|..+ .++|++|+|++|+++++.|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777764 44444 26777777777777777777777777777777777777766666667777777777777
Q ss_pred CcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315 594 NNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 594 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
|++++..+..+..+.++..+++++||+.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77776666656667777777777777777764
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=8.9e-14 Score=125.84 Aligned_cols=91 Identities=25% Similarity=0.267 Sum_probs=85.5
Q ss_pred cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591 (693)
Q Consensus 512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 591 (693)
+++++|+|++|++++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 46899999999999998999999999999999999999998889999999999999999999888888999999999999
Q ss_pred CCCcCcccCCC
Q 037315 592 AYNNLSGEIPE 602 (693)
Q Consensus 592 ~~N~l~~~~p~ 602 (693)
++|+++|.+++
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 99999987653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1e-13 Score=125.81 Aligned_cols=108 Identities=20% Similarity=0.248 Sum_probs=64.6
Q ss_pred ceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCC
Q 037315 515 SGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594 (693)
Q Consensus 515 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 594 (693)
+.+++++|++. .+|..+. ++|++|+|++|++++++|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 3344332 56666666666666666666666666666666666666555555566666666666666
Q ss_pred cCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315 595 NLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625 (693)
Q Consensus 595 ~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 625 (693)
++++..+..+..+.++..+++++|++.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6665544445556666666666666666653
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3.6e-16 Score=146.03 Aligned_cols=156 Identities=24% Similarity=0.311 Sum_probs=122.3
Q ss_pred ccCCCCCcEEeCcCcccCCCcch------hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315 383 FFNCSSLVTLDLSYNLLNGSIPD------WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD 456 (693)
Q Consensus 383 ~~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 456 (693)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|++..+ |..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh
Confidence 34456667777777777666555 88899999999999999986 55 788899999999999988743 32222
Q ss_pred cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536 (693)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 536 (693)
. +++|++|++++|++++. | .+..++
T Consensus 91 ~-----------------------------------------------------~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 91 V-----------------------------------------------------ADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp H-----------------------------------------------------HHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred c-----------------------------------------------------CCcCCEEECcCCcCCcC-C-ccccCC
Confidence 1 45799999999999863 4 688899
Q ss_pred CCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCCcc----------cccCCCCCEEecCCCcCcc
Q 037315 537 RIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPHQ----------LVELKELAVFSVAYNNLSG 598 (693)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~~ 598 (693)
+|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|+++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999999987644 57889999999999999998765543 78889999887 677653
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=1.2e-11 Score=128.78 Aligned_cols=136 Identities=10% Similarity=0.194 Sum_probs=91.8
Q ss_pred cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315 378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457 (693)
Q Consensus 378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 457 (693)
+...+|.+|..|+.+.+.++... +...+|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34447888888888888765443 556678888888888885 4566566777888888888888754 55566666665
Q ss_pred CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR 537 (693)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 537 (693)
+ .+|+.+.+..+ ++.+...+|.++++
T Consensus 333 C-----------------------------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 333 C-----------------------------------------------------EQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp C-----------------------------------------------------TTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred C-----------------------------------------------------CCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 3 37888888654 66566778999999
Q ss_pred CCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573 (693)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 573 (693)
|+.+++.++... ...|...++|+.+.+..|.+.
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 999999887654 256777888998888777653
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.9e-13 Score=122.81 Aligned_cols=90 Identities=26% Similarity=0.270 Sum_probs=84.2
Q ss_pred cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591 (693)
Q Consensus 512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 591 (693)
++|++|+|++|++.+..|..|..+++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 47999999999999998999999999999999999999998888999999999999999999877777999999999999
Q ss_pred CCCcCcccCC
Q 037315 592 AYNNLSGEIP 601 (693)
Q Consensus 592 ~~N~l~~~~p 601 (693)
++|++.+..+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999998655
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=2.1e-15 Score=140.71 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=117.4
Q ss_pred hhCCCCCCEEEccCCcccccCCc------ccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhh
Q 037315 407 IDGLSQLSHLILGNNNLEGEVPV------QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480 (693)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (693)
+.....++.++++.+.+.+..|. .+..+++|++|++++|++.++ | .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence 55667888888888888877766 889999999999999999873 3 4433
Q ss_pred cccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCC
Q 037315 481 KGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK 560 (693)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 560 (693)
+++|+.|++++|++. .+|..+..+++|++|++++|+++++ | .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 568999999999998 5677888889999999999999986 4 688999
Q ss_pred CCCEEeCCCccccccCC-cccccCCCCCEEecCCCcCcccCCC
Q 037315 561 QIESLDLSYNKLNGKIP-HQLVELKELAVFSVAYNNLSGEIPE 602 (693)
Q Consensus 561 ~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~p~ 602 (693)
+|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999986443 5788999999999999999988765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.4e-12 Score=133.44 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=91.4
Q ss_pred ccCcceEECCC-CcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315 511 LSLLSGLDLSC-NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589 (693)
Q Consensus 511 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 589 (693)
+++|+.|+|++ |.+.+..+..|.++++|++|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 44799999996 999988888899999999999999999999999999999999999999999977777776666 9999
Q ss_pred ecCCCcCcccCC-CCccccCcCCcccccCccCCCCCCC
Q 037315 590 SVAYNNLSGEIP-EWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 590 ~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
++++|++.|.++ .|+..+.......+..+.+.|..+.
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 999999987654 3333343334444556777776543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=3.3e-12 Score=130.70 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=97.9
Q ss_pred ceEECCCC-cccccCchhhccCCCCCeeeCCC-ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 515 SGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSH-NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 515 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
..++++++ ++++ +|. +..+++|++|+|++ |.++++++..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789988 8884 677 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315 593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626 (693)
Q Consensus 593 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~ 626 (693)
+|+|++..+..+..+. +..+.+.+|++.|+|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977666655444 89999999999999964
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=6.9e-10 Score=114.82 Aligned_cols=145 Identities=11% Similarity=0.102 Sum_probs=89.0
Q ss_pred cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315 382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH 461 (693)
Q Consensus 382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 461 (693)
.+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|..
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~---- 284 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG---- 284 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT----
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc----
Confidence 5555666666666544 22244455666667777766554 44455556666777777766543 33344444443
Q ss_pred cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCee
Q 037315 462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTL 541 (693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 541 (693)
..+|+.+++.++.++.+....|.++++|+.+
T Consensus 285 -------------------------------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 285 -------------------------------------------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp -------------------------------------------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred -------------------------------------------------ccccccccccccccceehhhhhcCCCCCCEE
Confidence 3367777777666666666677777777777
Q ss_pred eCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC
Q 037315 542 NLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK 584 (693)
Q Consensus 542 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 584 (693)
+|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77643 66666677777777777777654 5545555665543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=3.7e-10 Score=116.92 Aligned_cols=298 Identities=10% Similarity=0.067 Sum_probs=150.1
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272 (693)
Q Consensus 193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 272 (693)
..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++..+|.++ +|+.+.+..+ +..+....|... +|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 35677777754 355566667777777777777643 44 6666666655 5666655432 333333444332 56666
Q ss_pred eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352 (693)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 352 (693)
.+..+ +......+|..+ +++...+..+ ++..... +|..+..++...+..+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~------------------------~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDG------------------------IGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSC------------------------TTTTCTTCCEEEECTTCSS
T ss_pred cCCCc-cccccccccccc-eeeeeeccce-eeccccc------------------------hhcccccccccccccccce
Confidence 55443 221222333332 3333333322 1112223 3444444444444332211
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432 (693)
Q Consensus 353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (693)
......... ... ......+..+..+....+...... ....++..+.+|+.+.+..+ +......+|.
T Consensus 172 ~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~ 237 (379)
T 4h09_A 172 YVAENYVLY--------NKN----KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFY 237 (379)
T ss_dssp EEEETTEEE--------ETT----SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTT
T ss_pred eecccceec--------ccc----cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEcccccc
Confidence 000000000 000 000013334445555555443222 33445566666776666544 3334455566
Q ss_pred CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512 (693)
Q Consensus 433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (693)
++..|+.+.+..+ ++.+...+|.. ..
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~-----------------------------------------------------~~ 263 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQN-----------------------------------------------------CT 263 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTT-----------------------------------------------------CT
T ss_pred CCccceEEEcCCC-ccEeCccccce-----------------------------------------------------ee
Confidence 6677777766554 44444444443 22
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 592 (693)
+|+.+.+..+ +.......|.++++|+.+.+.++.++.+.+.+|.++++|+.++|..+ ++.+...+|.++++|+.+.+.
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 4555555433 44344556667777777777666666666667777777777777544 554555666677777766664
Q ss_pred C
Q 037315 593 Y 593 (693)
Q Consensus 593 ~ 593 (693)
.
T Consensus 342 ~ 342 (379)
T 4h09_A 342 K 342 (379)
T ss_dssp T
T ss_pred C
Confidence 4
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.3e-13 Score=138.31 Aligned_cols=161 Identities=20% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCCCCEEEccCCcccccCCCC----CC-CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccC----
Q 037315 144 NTKLRQLSLVNDSLAGPFRLP----IH-SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF---- 214 (693)
Q Consensus 144 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---- 214 (693)
.+.|++|++++|.++...... +. ..++|++|++++|.+++.....+...+++|++|+|++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356667777776665432221 11 225677777777776543334444445567777777776654333222
Q ss_pred -CCCCCCCEEEcccCccccccchHH---hhCCCCCcEEEcccccccccc----CccCCCCCCCCeEeccCccccccC---
Q 037315 215 -GNMNLLQILDLSNNQLTGEIPEHL---AMGCVNLEFLALSNNSLKGHM----FSRNFNLINLRWLQLEGNHFVGEI--- 283 (693)
Q Consensus 215 -~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~--- 283 (693)
...++|++|+|++|.+++.....+ ...+++|++|++++|.+.+.. ...+...++|++|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234566777777766652111111 123556666666666655422 222334445555555555554321
Q ss_pred -CcCCcCCCCCCEEeccCCccc
Q 037315 284 -PQSLSKCSSLEGLYLNNNSLS 304 (693)
Q Consensus 284 -~~~l~~l~~L~~L~L~~n~i~ 304 (693)
...+...++|++|++++|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 112223344555555555444
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=7.7e-13 Score=135.56 Aligned_cols=135 Identities=19% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccC-----CCCCCCCeEeccCcccccc----CCcCCc
Q 037315 218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN-----FNLINLRWLQLEGNHFVGE----IPQSLS 288 (693)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~ 288 (693)
++|++|+|++|.+.+.....+...+++|++|++++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544422222222234455555555555543322222 1235566666666655431 222334
Q ss_pred CCCCCCEEeccCCcccccC----CccccCCCCCcEEEccCCccccCc----cccccCCCCCCEEECcCCcCC
Q 037315 289 KCSSLEGLYLNNNSLSGKI----PRWLGNLTWLIHIIMPKNHLEGPI----PVEFCHLYSLQILDISDNNIS 352 (693)
Q Consensus 289 ~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~ 352 (693)
.+++|++|++++|.+++.. +..+...++|++|++++|.+.... +..+...++|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4566666666666655322 334445556666666666665322 223344566777777777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=2.3e-09 Score=108.60 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=96.4
Q ss_pred cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC--CCCCCCEEEccCC--cCcccCCCCccc
Q 037315 382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC--GLNQLQLLDLSNN--NLHGLIPPCFDN 457 (693)
Q Consensus 382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~~~~~~~~ 457 (693)
.+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+.. .+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~ 241 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV 241 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH
Confidence 4566788888888877311 1222 33 78899999888887654444443 6888998888532 111100 0000
Q ss_pred CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc---c
Q 037315 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---N 534 (693)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~ 534 (693)
.. ....+..+++|++|+|.+|.+.+..+..+. .
T Consensus 242 l~--------------------------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 242 FR--------------------------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp TG--------------------------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred HH--------------------------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 00 001112266788888888887654433333 4
Q ss_pred CCCCCeeeCCCccCCccC----cccccCCCCCCEEeCCCccccccCCccccc-CCCCCEEecCCCc
Q 037315 535 LTRIQTLNLSHNNLTGLI----PSTFSNLKQIESLDLSYNKLNGKIPHQLVE-LKELAVFSVAYNN 595 (693)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~ 595 (693)
+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 678888888888877642 233455678888888888776443333332 2 3456777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1.7e-08 Score=102.30 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred hcCCCCCCEEEccCcccc---------ccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCC
Q 037315 116 LYYQHDLEDVHFSRIQMN---------GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIP 186 (693)
Q Consensus 116 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 186 (693)
...+++|+.|.+...... +.+. .++..+|+|++|.++++.-. ..+ .+ .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~-~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIG-KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eec-cc-cCCCCcEEEEecCCCChHHH
Confidence 445678888877654221 1222 33467888888888876311 111 23 36788888888877653333
Q ss_pred hhhh-hcCCCCcEEEccCC--ccccc-----CCccC--CCCCCCCEEEcccCccccccchHHhh--CCCCCcEEEccccc
Q 037315 187 VEIG-DILPRLISFNISMN--ALDGS-----IPSSF--GNMNLLQILDLSNNQLTGEIPEHLAM--GCVNLEFLALSNNS 254 (693)
Q Consensus 187 ~~~~-~~l~~L~~L~L~~n--~i~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~ 254 (693)
..+. ..+|+|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+..+..++. .+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 13788888887532 11100 11112 24667777777777665433333332 24556666666555
Q ss_pred ccc
Q 037315 255 LKG 257 (693)
Q Consensus 255 l~~ 257 (693)
+.+
T Consensus 291 L~d 293 (362)
T 2ra8_A 291 LTD 293 (362)
T ss_dssp CBH
T ss_pred CCh
Confidence 554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=9.6e-08 Score=87.16 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=19.1
Q ss_pred hhCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEEccCCcCc
Q 037315 407 IDGLSQLSHLILGNN-NLEGE----VPVQLCGLNQLQLLDLSNNNLH 448 (693)
Q Consensus 407 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 448 (693)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344445555555554 44321 1222344455555555555543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=5.8e-07 Score=86.03 Aligned_cols=62 Identities=31% Similarity=0.374 Sum_probs=27.7
Q ss_pred ccCcceEECCCCccccc--CchhhccCCCCCeeeCCCccCCccCcccccCCC--CCCEEeCCCccccc
Q 037315 511 LSLLSGLDLSCNKLIGH--IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK--QIESLDLSYNKLNG 574 (693)
Q Consensus 511 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~ 574 (693)
+++|+.|+|++|++.+. +|..+..+++|+.|+|++|++++. ..+..++ +|++|+|++|++.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 34455555555555442 223344455555555555555443 1122222 45555555555443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=3.1e-07 Score=83.72 Aligned_cols=115 Identities=13% Similarity=0.206 Sum_probs=57.1
Q ss_pred hcCCCCCEEEccCC-ccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhhh---cCCCCcEEEccCCccccc----
Q 037315 142 ENNTKLRQLSLVND-SLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD---ILPRLISFNISMNALDGS---- 209 (693)
Q Consensus 142 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~---- 209 (693)
...+.|++|++++| .+... +...+...++|++|++++|.+.+.....+++ ..++|++|+|++|.|++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34455555555555 44432 1222344556666666666655322222221 134566666666666532
Q ss_pred CCccCCCCCCCCEEEc--ccCccccccchHH---hhCCCCCcEEEccccccc
Q 037315 210 IPSSFGNMNLLQILDL--SNNQLTGEIPEHL---AMGCVNLEFLALSNNSLK 256 (693)
Q Consensus 210 ~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~ 256 (693)
+...+...+.|++|++ ++|.+.+.....+ ....++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334555566777777 6666653322111 123456666666666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=4.2e-07 Score=87.05 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=65.2
Q ss_pred EECCCCccc---ccCchhhccCCCCCeeeCCCccCCccC--cccccCCCCCCEEeCCCccccccCCcccccCC--CCCEE
Q 037315 517 LDLSCNKLI---GHIPPQVGNLTRIQTLNLSHNNLTGLI--PSTFSNLKQIESLDLSYNKLNGKIPHQLVELK--ELAVF 589 (693)
Q Consensus 517 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L 589 (693)
++++.|... ...+....++++|++|+|++|+++++. |..+..+++|+.|+|++|++.+. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677777433 222233367899999999999999853 46677899999999999999865 3455555 99999
Q ss_pred ecCCCcCcccCCC
Q 037315 590 SVAYNNLSGEIPE 602 (693)
Q Consensus 590 ~l~~N~l~~~~p~ 602 (693)
++++|++.+..|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=4.4e-07 Score=80.29 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=69.0
Q ss_pred CcceEECCCCcccccCchhhccCCCCCeeeCCCcc-CCccCcccccCC----CCCCEEeCCCcc-ccccCCcccccCCCC
Q 037315 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KQIESLDLSYNK-LNGKIPHQLVELKEL 586 (693)
Q Consensus 513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L 586 (693)
.|++||+++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 69999999999987777778999999999999995 775444555554 479999999986 776555677889999
Q ss_pred CEEecCCCc
Q 037315 587 AVFSVAYNN 595 (693)
Q Consensus 587 ~~L~l~~N~ 595 (693)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999996
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.1e-06 Score=75.87 Aligned_cols=84 Identities=8% Similarity=0.084 Sum_probs=50.5
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCCEEEcccCc-cccccchHHhhC---CCCCcEEEccccc-cccccCccCCCCCCC
Q 037315 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ-LTGEIPEHLAMG---CVNLEFLALSNNS-LKGHMFSRNFNLINL 269 (693)
Q Consensus 195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 269 (693)
+|++|++++|.++...-..+..+++|++|+|++|. +++..-..+... +++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777766555566777777777777774 443222223210 2357777777764 555444445556666
Q ss_pred CeEeccCcc
Q 037315 270 RWLQLEGNH 278 (693)
Q Consensus 270 ~~L~L~~n~ 278 (693)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.89 E-value=1.1e-05 Score=68.10 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=63.3
Q ss_pred CeeeCCCccCC--ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC-CccccCcCCcccc
Q 037315 539 QTLNLSHNNLT--GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE-WKAQFATFNENSY 615 (693)
Q Consensus 539 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~l~~~~~ 615 (693)
..++.+++.++ .+ |..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.... |+..+..
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~------ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA------ 81 (130)
T ss_dssp TEEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH------
T ss_pred CEEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH------
Confidence 47888999987 44 54432 4699999999999988888889999999999999998875431 1111111
Q ss_pred cCccCCCCCCCCCCCCCCCCCccccccccCC
Q 037315 616 EGNTFLCGLPLPICRSPTTMSEASIENERDD 646 (693)
Q Consensus 616 ~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~ 646 (693)
.++..-......|..|....+..+..+..+
T Consensus 82 -~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~ 111 (130)
T 3rfe_A 82 -GRPERAPYRDLRCVAPPALRGRLLPYLAED 111 (130)
T ss_dssp -TSSCSGGGTTCBCCBSTTTTTCBGGGCCHH
T ss_pred -hCcccccccCcEeCcChHHcCCCcccCCHH
Confidence 110000011235777877777666555443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.0007 Score=56.96 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=43.9
Q ss_pred ceEECCCCccc-ccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315 515 SGLDLSCNKLI-GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573 (693)
Q Consensus 515 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 573 (693)
..++.++++++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46888888876 24454332 36888899999988888888888888999999988875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.00025 Score=63.94 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=54.2
Q ss_pred hccCCCCCCEEECCCC-CCCC----cCCccccCCCCCCCEEECCCCcCcCcCC---cccccCCCCCcEEEccCCcccccc
Q 037315 13 CLANMTSLRILDVSSN-QLTG----SISSSPLFYLTSIEELSLSNNHFHIPIS---LEPLFNHSRLKIFYADNNPINAKI 84 (693)
Q Consensus 13 ~~~~l~~L~~L~Ls~n-~l~~----~l~~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~ 84 (693)
.+.+-+.|++|+|++| .|.+ .+.. ++..-+.|++|+|++|++.+..- ...+..-+.|++|+|++|.|....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4455678888888875 7652 1333 45666788888888888853211 123445678888888888887665
Q ss_pred ccccCCCCCC-ccccEEec
Q 037315 85 TKSHTLTTPK-FQLASLSL 102 (693)
Q Consensus 85 ~~~~~~~~~~-~~L~~L~L 102 (693)
...+...+.. ..|++|+|
T Consensus 115 a~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp HHHHHHHTTTTCCCSEEEC
T ss_pred HHHHHHHHhhCCceeEEEC
Confidence 5544433321 13444444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00041 Score=62.54 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCCCCCEEEccCCcCcccCChhhhh---cCCCCcEEEccCCccccc----CCccCCCCCCCCEEEcccC
Q 037315 166 HSHRHLRLLDVSNNNFQGHIPVEIGD---ILPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNN 228 (693)
Q Consensus 166 ~~~~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n 228 (693)
...+.|++|+|++|.+.+.....+++ .-+.|++|+|++|.|+.. +.+++..-+.|++|+|+++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445555555555544222222221 123455555555554421 1123444455666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.51 E-value=4.3 Score=31.60 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCC
Q 037315 5 ELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSN 52 (693)
Q Consensus 5 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~ 52 (693)
.++.+-..+|.++++|+.+.+-.+ ++ .|...+|..|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 455555666666666666666654 33 45555666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.27 E-value=15 Score=28.42 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=25.3
Q ss_pred ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCC
Q 037315 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569 (693)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 569 (693)
++.+....|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455666666666666543 4445555666666666666654
Done!