BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037321
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 3 AREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEIT 62
A E + +LI +TW KMN+++ F FV A+NLAR S C Y G+ H E+T
Sbjct: 481 ATESVMNLIDETWKKMNKEKLGGSLFAKP-FVETAINLARQSHCTYHNGDAHT-SPDELT 538
Query: 63 KARVLSLIVDPI 74
+ RVLS+I +PI
Sbjct: 539 RKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 2 EAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHG 55
EAR+H+ LIA+ W KMN +R F+G A++L RM+Q MY G+GHG
Sbjct: 471 EARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHG 524
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 2 EAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQ 59
EAREH+ LI QTW MN++ + S FV ++ NLARM+Q +YQ E G G+Q
Sbjct: 498 EAREHVRSLIDQTWKMMNKEMMTSS--FSKYFVEVSANLARMAQWIYQH-ESDGFGMQ 552
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQE 60
+EA + + + W +N++ F+ P + + ++NLAR+ +Y+ G+G+ + V +
Sbjct: 481 QEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY-VGK 538
Query: 61 ITKARVLSLIVDPIA 75
K + SL+++PIA
Sbjct: 539 AAKGGITSLLIEPIA 553
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 2 EAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEI 61
EA EH+ LI + W MN F D V A N+ R++Q +Y G+ G GVQ
Sbjct: 478 EAVEHVKFLIREAWKDMNTAIAAGYPF-PDGMVAGAANIGRVAQFIYLHGD--GFGVQHS 534
Query: 62 -TKARVLSLIVDPIA 75
T + L+ +P A
Sbjct: 535 KTYEHIAGLLFEPYA 549
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
E+ K +++L+VD I
Sbjct: 532 EVLKPHIINLLVDSI 546
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
E+ K +++L+VD I
Sbjct: 532 EVLKPHIINLLVDSI 546
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
E+ K +++L+VD I
Sbjct: 532 EVLKPHIINLLVDSI 546
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 33.1 bits (74), Expect = 0.045, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
E+ K +++L+VD I
Sbjct: 532 EVLKPHIINLLVDSI 546
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 461 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 518
Query: 60 EITKARVLSLIVDPI 74
++ K +++L+VD I
Sbjct: 519 KVLKPHIINLLVDSI 533
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 476 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 533
Query: 60 EITKARVLSLIVDPI 74
++ K +++L+VD I
Sbjct: 534 KVLKPHIINLLVDSI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
++ K +++L+VD I
Sbjct: 532 KVLKPHIINLLVDSI 546
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 474 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP-E 531
Query: 60 EITKARVLSLIVDPI 74
++ K +++L+VD I
Sbjct: 532 KVLKPHIINLLVDSI 546
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQ 59
+EA ++ W +N + + P VS F+ +NLAR+ + Y +G+ H +
Sbjct: 476 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHP-E 533
Query: 60 EITKARVLSLIVDPI 74
++ K +++L+VD I
Sbjct: 534 KVLKPHIINLLVDSI 548
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 2 EAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEI 61
EA +H++ ++ ++NR+ FVN + + D++ + AR+ Q Y G+G
Sbjct: 714 EALQHVYSVMENALEELNRE-FVN-NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDME 771
Query: 62 TKARVLSLIVDPIA 75
K V + + P+A
Sbjct: 772 IKEHVKNCLFQPVA 785
>pdb|2WUY|A Chain A, The Crystal Structure Of Wild-Type Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 13 QTWMKMNRDRF--VNPHFVSDVFVGIAMNLARMSQCMYQFGEGHG 55
+TW + D F VN V DVF+ + M R ++C Y+F H
Sbjct: 97 ETWTRFMEDSFPIVNDQEVMDVFLVVNMRPTRPNRC-YKFLAQHA 140
>pdb|2WUX|A Chain A, The Crystal Structure Of Recombinant Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 13 QTWMKMNRDRF--VNPHFVSDVFVGIAMNLARMSQCMYQFGEGHG 55
+TW + D F VN V DVF+ + M R ++C Y+F H
Sbjct: 97 ETWTRFMEDSFPIVNDQEVMDVFLVVNMRPTRPNRC-YKFLAQHA 140
>pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
Length = 262
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 8 HDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGE 52
HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 61 HDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 105
>pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
Length = 263
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 8 HDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGE 52
HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 62 HDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 106
>pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
Length = 262
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 8 HDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGE 52
HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 61 HDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,235,506
Number of Sequences: 62578
Number of extensions: 65666
Number of successful extensions: 165
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 20
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)