Query 037321
Match_columns 75
No_of_seqs 106 out of 621
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 99.9 2.1E-25 7E-30 163.6 8.3 73 1-75 481-553 (554)
2 3n0f_A Isoprene synthase; terp 99.9 2E-25 6.9E-30 163.6 7.8 73 1-75 479-551 (555)
3 3m00_A Aristolochene synthase; 99.9 5.2E-25 1.8E-29 161.3 6.5 73 1-75 476-549 (550)
4 1n1b_A (+)-bornyl diphosphate 99.9 2E-24 6.8E-29 158.1 8.6 73 1-75 477-549 (549)
5 3sdr_A Alpha-bisabolene syntha 99.9 9.7E-24 3.3E-28 159.8 8.8 73 1-75 744-816 (817)
6 2ong_A 4S-limonene synthase; m 99.9 1.5E-23 5.2E-28 153.2 8.9 73 1-75 470-543 (543)
7 3p5p_A Taxadiene synthase; cla 99.9 1.1E-23 3.8E-28 158.7 7.4 73 1-75 682-755 (764)
8 2j5c_A 1,8-cineole synthase; t 99.9 5.6E-23 1.9E-27 151.0 8.2 72 1-75 497-569 (569)
9 3s9v_A Abietadiene synthase, c 99.9 2.5E-22 8.6E-27 151.7 7.9 72 1-75 713-785 (785)
10 3pya_A ENT-copalyl diphosphate 98.4 1.8E-07 6E-12 70.7 4.3 61 3-74 657-719 (727)
11 1ps1_A Pentalenene synthase; a 95.5 0.014 4.8E-07 39.3 3.9 22 1-22 249-270 (337)
12 1di1_A Aristolochene synthase; 93.2 0.061 2.1E-06 35.4 2.9 22 1-22 243-264 (300)
13 3kb9_A EPI-isozizaene synthase 92.2 0.087 3E-06 36.5 2.6 21 1-21 291-311 (382)
14 3bny_A Aristolochene synthase; 83.9 0.81 2.8E-05 30.3 2.9 22 1-22 257-278 (320)
15 3mtu_A Tropomyosin alpha-1 cha 60.4 6.5 0.00022 21.4 2.3 19 40-58 57-75 (75)
16 1bh9_A TAFII18; histone fold, 51.1 14 0.00047 18.2 2.4 26 44-71 7-32 (45)
17 3v1v_A 2-MIB synthase, 2-methy 45.3 14 0.00049 26.1 2.6 21 1-21 369-389 (433)
18 3tq7_B Microtubule-associated 44.0 11 0.00039 21.0 1.6 20 40-59 49-68 (82)
19 3ig9_A SOC small outer capsid 42.3 9.4 0.00032 21.0 1.0 15 13-27 61-75 (78)
20 2o6n_A RH4B designed peptide; 42.2 26 0.0009 16.0 2.8 22 1-22 5-26 (35)
21 2rmh_A Urocortin-3; CRF ligand 40.9 27 0.00094 16.7 2.5 17 29-45 7-23 (38)
22 3swh_A MUNC13-1, protein UNC-1 40.7 58 0.002 22.3 5.1 50 6-55 236-304 (341)
23 2rno_A Putative DNA-binding pr 39.7 23 0.00078 20.7 2.5 18 3-20 69-86 (110)
24 3ono_A Ribose/galactose isomer 38.5 29 0.00098 22.6 3.1 36 29-70 178-213 (214)
25 1wgf_A Upstream binding factor 31.5 24 0.00082 19.1 1.6 18 4-21 48-65 (90)
26 3u2b_C Transcription factor SO 29.4 28 0.00095 18.1 1.6 17 4-20 30-46 (79)
27 2e6o_A HMG box-containing prot 28.7 29 0.00098 18.6 1.6 17 5-21 46-62 (87)
28 1hry_A Human SRY; DNA, DNA-bin 28.4 18 0.00061 18.8 0.7 14 6-19 34-47 (76)
29 4a3n_A Transcription factor SO 28.4 30 0.001 17.4 1.6 16 5-20 31-46 (71)
30 2jtt_C Calcyclin-binding prote 27.4 55 0.0019 15.2 2.9 24 42-72 10-33 (35)
31 2rmg_A Urocortin-2; CRF ligand 27.1 33 0.0011 16.4 1.4 16 29-44 7-22 (38)
32 3cqx_C BAG family molecular ch 25.9 75 0.0026 17.9 3.0 21 1-21 6-26 (88)
33 3f27_D Transcription factor SO 25.7 35 0.0012 17.9 1.6 33 5-48 35-67 (83)
34 2eqz_A High mobility group pro 25.5 24 0.00083 18.8 0.9 18 4-21 45-62 (86)
35 1wz6_A HMG-box transcription f 25.4 22 0.00074 18.8 0.7 39 6-55 37-76 (82)
36 1ckt_A High mobility group 1 p 25.4 17 0.00057 18.6 0.2 16 5-20 32-47 (71)
37 1hme_A High mobility group pro 25.3 27 0.00092 18.1 1.1 16 5-20 35-50 (77)
38 2cs1_A PMS1 protein homolog 1; 25.1 25 0.00085 19.1 0.9 17 5-21 36-52 (92)
39 3zvr_A Dynamin-1; hydrolase, D 23.0 1.2E+02 0.004 23.2 4.5 48 4-54 679-732 (772)
40 3fau_A NEDD4-binding protein 2 22.9 51 0.0017 17.4 1.9 18 1-18 11-28 (82)
41 1gt0_D Transcription factor SO 22.9 24 0.00084 18.4 0.6 33 5-48 31-63 (80)
42 2lef_A LEF-1 HMG, protein (lym 22.7 25 0.00084 18.8 0.6 33 5-48 31-63 (86)
43 1wxl_A Single-strand recogniti 22.4 29 0.00098 17.9 0.8 14 5-18 32-45 (73)
44 4eo3_A Bacterioferritin comigr 22.3 1.1E+02 0.0039 20.2 3.9 46 2-48 129-181 (322)
45 3fgh_A Transcription factor A, 21.9 28 0.00096 17.6 0.7 16 5-20 27-42 (67)
46 1t3u_A Conserved hypothetical 21.3 1.1E+02 0.0039 16.8 3.4 38 2-41 26-63 (104)
47 1ngm_B Transcription factor II 21.0 37 0.0013 18.4 1.0 15 10-24 48-62 (72)
48 1j46_A SRY, sex-determining re 20.6 29 0.00099 18.5 0.6 33 5-48 33-65 (85)
49 1k99_A Upstream binding factor 20.3 27 0.00092 19.4 0.4 16 5-20 39-54 (99)
50 2igp_A Retinoblastoma-associat 20.2 1.4E+02 0.0047 17.3 3.7 31 39-70 48-79 (120)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=99.92 E-value=2.1e-25 Score=163.56 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++|++||+++||+||++++++++ +|++|+++++|+||+++++|++|||||.|++. +|++|++||++||+
T Consensus 481 EeA~~~i~~~Ie~~wK~lN~e~l~~~~-~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~-~k~~i~~ll~~Pi~ 553 (554)
T 3g4d_A 481 QEAYDVFNKHVESAWKDLNQEFLKPTE-MPTEVLNRSLNLARVMDVLYREGDGYTYVGKA-AKGGITSLLIEPIA 553 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCS-SCHHHHHHHHHHHHHHHHHSCC-----CCCHH-HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHH-HHHHHHHHhcCCCC
Confidence 689999999999999999999998888 99999999999999999999999999999777 99999999999996
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=99.92 E-value=2e-25 Score=163.63 Aligned_cols=73 Identities=40% Similarity=0.656 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++|++||+++||+||++++++++ +|++|+++++|+||+++++|++|||||.|++. +|++|++||++||+
T Consensus 479 EeA~~~i~~~Ie~~wK~lN~e~l~~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~-~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 479 ELATESVMNLIDETWKKMNKEKLGGSL-FAKPFVETAINLARQSHCTYHNGDAHTSPDEL-TRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHHHHHHHHSCCC---CCHHHH-HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHH-HHHHHHHHHhcCCC
Confidence 689999999999999999999998888 99999999999999999999999999999767 99999999999996
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=99.91 E-value=5.2e-25 Score=161.33 Aligned_cols=73 Identities=26% Similarity=0.462 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccC-CCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++|++||+++||+||++++++++ +|++|+++++|+||+++++|++| ||||.|++. +|++|++||++||+
T Consensus 476 EeA~~~i~~~Ie~~wK~lN~e~l~~~~-~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~-~k~~i~~ll~~Pi~ 549 (550)
T 3m00_A 476 KEAMAKFQNMAETAWKDINEGLLRPTP-VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKV-LKPHIINLLVDSIK 549 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCS-SCGGGTHHHHHHHHHHHHHTSCC-----CCHHH-HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHH-HHHHHHHHhhCCCC
Confidence 689999999999999999999998888 99999999999999999999998 999999767 99999999999996
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=99.91 E-value=2e-24 Score=158.10 Aligned_cols=73 Identities=32% Similarity=0.485 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||++++++||+++||++|++++++++ +|++|+++++|+||+++++|++|||||.|++. +|++|++||++|||
T Consensus 477 eeA~~~i~~~i~~~wk~ln~e~l~~~~-vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~-~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 477 EEAVEHVKFLIREAWKDMNTAIAAGYP-FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSK-TYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHHHTTTSCCC----CH-HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHeeehheeCCCCCCCCcHH-HHHHHHHHhcCCCC
Confidence 589999999999999999999998888 99999999999999999999999999999777 99999999999997
No 5
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=99.90 E-value=9.7e-24 Score=159.84 Aligned_cols=73 Identities=18% Similarity=0.355 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++|+++|+++||+||+++++++. +|++|+++++|+||++++||++|||||.|++. +|++|++||++||+
T Consensus 744 EeA~~~i~~~Ie~~wKeln~e~l~~~~-~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~-~k~~i~~ll~~pi~ 816 (817)
T 3sdr_A 744 EEALDHIYSILEPAVKELTREFLKPDD-VPFACKKMLFEETRVTMVIFKDGDGFGVSKLE-VKDHIKECLIEPLP 816 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHH-HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCchHH-HHHHHHHHhcCCCC
Confidence 589999999999999999999998778 99999999999999999999999999999767 99999999999996
No 6
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=99.89 E-value=1.5e-23 Score=153.16 Aligned_cols=73 Identities=37% Similarity=0.643 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh-hcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDR-FVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~-l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++++++|+++||+||+++ +++++ +|++|+++++|+||+++++|++|||||.|++. +|++|++||++|||
T Consensus 470 eeA~~~i~~~ie~~wk~ln~e~~l~~~~-vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~-~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 470 AEARKHVKWLIAEVWKKMNAERVSKDSP-FGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPI-IHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCS-SCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTT-HHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHeehhheeCCCCCCCccHH-HHHHHHHHhccCCC
Confidence 5899999999999999999999 88778 99999999999999999999999999999777 99999999999996
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=99.89 E-value=1.1e-23 Score=158.67 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhc-CCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFV-NPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~-~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++|+++|+++||+||+++++ ++. +|++|+++++|+||++++||++|||||.|+.+ +|++|++||++||+
T Consensus 682 EeA~~~i~~~Ie~~wKeln~e~l~~~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~-~k~~i~~ll~~Pi~ 755 (764)
T 3p5p_A 682 EDAIKHICRVVDRALKEASFEYFKPSND-IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEE-IKDYIRKVYIDPIQ 755 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSS-SCHHHHHHHHHTHHHHHHHSCC-------CCC-HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHH-HHHHHHHHHhcCCc
Confidence 589999999999999999999997 677 99999999999999999999999999998767 99999999999985
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=99.88 E-value=5.6e-23 Score=150.97 Aligned_cols=72 Identities=36% Similarity=0.580 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccC-CCCCCCchhhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHGHGVQEITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~~k~~I~sll~~Pi~ 75 (75)
|||+++++++|+++||+||+++++ ++ +|++|+++++|+||+++++|++| ||||.|++. +|++|++||++|||
T Consensus 497 eeA~~~i~~~ie~~wk~ln~e~l~-~~-vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~-~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 497 EEAREHVRSLIDQTWKMMNKEMMT-SS-FSKYFVEVSANLARMAQWIYQHESDGFGMQHSL-VNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-CC-SCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCH-HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cC-CCHHHHHHHHHHHheeehhccCCCcCCCCchHH-HHHHHHHHhccCCC
Confidence 589999999999999999999998 78 99999999999999999999999 999999767 99999999999997
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=99.87 E-value=2.5e-22 Score=151.67 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHhhccccCC
Q 037321 1 REAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQ-EITKARVLSLIVDPIA 75 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~-~~~k~~I~sll~~Pi~ 75 (75)
|||+++++++|+++||+||++++++ . +|++|+++++|+||++++||+++||||.|+. . +|++|++||++||.
T Consensus 713 EeA~~~i~~~Ie~~wKeln~e~l~~-~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~-~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 713 EEALQHVYSVMENALEELNREFVNN-K-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDME-IKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHH-HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHH-HHHHHHHHhcccCC
Confidence 5899999999999999999999984 4 8999999999999999999999999999975 6 99999999999984
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=98.42 E-value=1.8e-07 Score=70.69 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhccccC
Q 037321 3 AREHIHDLIAQTWMKMNRDRFVNP--HFVSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLIVDPI 74 (75)
Q Consensus 3 A~~~i~~~i~~~wK~ln~e~l~~~--~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~Pi 74 (75)
..+++++.||..|++|++.++.++ . +|++| |+.++++.||.. ||+.| + |..+|.++|++|+
T Consensus 657 ~~~~~~~~IE~~mqEL~~lVl~~~~~~-ip~~~-----tf~~V~ksFYy~--ay~~p--~-i~~hI~kVl~~~~ 719 (727)
T 3pya_A 657 EKEKTIKSMEKEMGKMVELALSESDTF-RDVSI-----TFLDVAKAFYYF--ALCGD--H-LQTHISKVLFQKV 719 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCTTT-HHHHH-----HHHHHHHHHHHH--HHHTT--S-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcc-----cHHHHHHHHHhh--hcCCH--H-HHHHHHHHHcCcc
Confidence 357899999999999999999644 5 99999 899999999986 99987 4 8999999999997
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=95.52 E-value=0.014 Score=39.31 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh
Q 037321 1 REAREHIHDLIAQTWMKMNRDR 22 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~ 22 (75)
|||+++++++|+++||++|+..
T Consensus 249 eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 249 SRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999986
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=93.25 E-value=0.061 Score=35.45 Aligned_cols=22 Identities=0% Similarity=-0.118 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh
Q 037321 1 REAREHIHDLIAQTWMKMNRDR 22 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~ 22 (75)
|||+++++++|++.||++|+..
T Consensus 243 eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 243 PATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999865
No 13
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=92.17 E-value=0.087 Score=36.51 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 037321 1 REAREHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e 21 (75)
|||++++++||++.||++|+.
T Consensus 291 eeA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 291 EEAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999984
No 14
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=83.86 E-value=0.81 Score=30.32 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh
Q 037321 1 REAREHIHDLIAQTWMKMNRDR 22 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~ 22 (75)
|||+++++++|++.|+++|+..
T Consensus 257 eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 257 EAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999754
No 15
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=60.44 E-value=6.5 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.1
Q ss_pred HHHHHHHhhccCCCCCCCc
Q 037321 40 LARMSQCMYQFGEGHGHGV 58 (75)
Q Consensus 40 laR~~~~~Y~~~Dg~t~~~ 58 (75)
+.|+..++|.-.|||..|+
T Consensus 57 ~~~I~~ILYat~~~f~~p~ 75 (75)
T 3mtu_A 57 LQRIVDILYATDEGFVIPD 75 (75)
T ss_dssp HHHHHHHHHCBTTBCSSCC
T ss_pred HHHHHHHHhccCcCCCCCC
Confidence 4588889999999999873
No 16
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=51.15 E-value=14 Score=18.17 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=15.9
Q ss_pred HHHhhccCCCCCCCchhhHHHHHHhhcc
Q 037321 44 SQCMYQFGEGHGHGVQEITKARVLSLIV 71 (75)
Q Consensus 44 ~~~~Y~~~Dg~t~~~~~~~k~~I~sll~ 71 (75)
-+.+|..||. ..|..+ +-+.+..++.
T Consensus 7 ~~mMy~fGD~-~~P~~E-Tv~llEeiV~ 32 (45)
T 1bh9_A 7 RCMMYGFGDD-QNPYTE-SVDILEDLVI 32 (45)
T ss_dssp HHHHHHTTSC-SSCCHH-HHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCcHH-HHHHHHHHHH
Confidence 4677999987 345445 5555555443
No 17
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=45.28 E-value=14 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 037321 1 REAREHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e 21 (75)
|||++++++|+++.+++..+.
T Consensus 369 eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 369 RDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999987754
No 18
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=44.01 E-value=11 Score=20.95 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=10.5
Q ss_pred HHHHHHHhhccCCCCCCCch
Q 037321 40 LARMSQCMYQFGEGHGHGVQ 59 (75)
Q Consensus 40 laR~~~~~Y~~~Dg~t~~~~ 59 (75)
+.|+..++|.-.|||..|+.
T Consensus 49 ~~~I~~ILYaTeegf~~p~~ 68 (82)
T 3tq7_B 49 ISGIIGILYATEEGFAPPED 68 (82)
T ss_dssp HHHHHHHHTCCC--------
T ss_pred HHHHHHHHhccccCCCCCCc
Confidence 56889999999999998854
No 19
>3ig9_A SOC small outer capsid protein; alpha/beta structure, viral protein; 1.90A {Enterobacteria phage RB69} PDB: 3ige_A
Probab=42.28 E-value=9.4 Score=21.04 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcCCC
Q 037321 13 QTWMKMNRDRFVNPH 27 (75)
Q Consensus 13 ~~wK~ln~e~l~~~~ 27 (75)
+.|+-.|++.+++++
T Consensus 61 ~~Wit~Ne~mf~~t~ 75 (78)
T 3ig9_A 61 ADWRTKNAAMFTPTP 75 (78)
T ss_dssp HHHHHHHHTTTCCEE
T ss_pred hhHhhcCcccccccc
Confidence 789999999998765
No 20
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=42.24 E-value=26 Score=15.99 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh
Q 037321 1 REAREHIHDLIAQTWMKMNRDR 22 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e~ 22 (75)
|.|.++|.-+|..+-.++.+|.
T Consensus 5 eqakkeiaylikkakeeileei 26 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKEEILEEI 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888877777776664
No 21
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=40.93 E-value=27 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.9
Q ss_pred CcHHHHHHHHHHHHHHH
Q 037321 29 VSDVFVGIAMNLARMSQ 45 (75)
Q Consensus 29 ~p~~~~~~~~NlaR~~~ 45 (75)
+|..+++..+++||.=.
T Consensus 7 vp~~ll~~l~e~Ara~~ 23 (38)
T 2rmh_A 7 VPTNIMNLLFNIAKAKN 23 (38)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 89999999999999643
No 22
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=40.74 E-value=58 Score=22.31 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-------------------CCCCCcHHHHHHHHHHHHHHHHhhccCCCCC
Q 037321 6 HIHDLIAQTWMKMNRDRFV-------------------NPHFVSDVFVGIAMNLARMSQCMYQFGEGHG 55 (75)
Q Consensus 6 ~i~~~i~~~wK~ln~e~l~-------------------~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t 55 (75)
-++.++.+-|+.+-..+.. ....-|+.|-..-.-+.-+.+||+.+|||-.
T Consensus 236 ~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~ 304 (341)
T 3swh_A 236 VLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLK 304 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 4677888889988666543 0110244555555556667899999999964
No 23
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=39.66 E-value=23 Score=20.69 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037321 3 AREHIHDLIAQTWMKMNR 20 (75)
Q Consensus 3 A~~~i~~~i~~~wK~ln~ 20 (75)
+++++-++|+++|++|.-
T Consensus 69 ~kE~vaKIVDDtYRKMqv 86 (110)
T 2rno_A 69 TKEAVAKIVDDTYRKMQI 86 (110)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 467888999999998874
No 24
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=38.50 E-value=29 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHhhc
Q 037321 29 VSDVFVGIAMNLARMSQCMYQFGEGHGHGVQEITKARVLSLI 70 (75)
Q Consensus 29 ~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~~k~~I~sll 70 (75)
+.+.+++.++.--|..++||.++.. .+ +.+++++++
T Consensus 178 ~d~~~~~~~~~~~~f~~~~~~~~~~-----~~-i~~~~~~~~ 213 (214)
T 3ono_A 178 IDQELVKTAVGSTQFQECFFAHCQV-----PE-IAEYVKSLL 213 (214)
T ss_dssp SCHHHHHHHTCSHHHHHHHHHHCCC-----HH-HHHHHHHHC
T ss_pred hCHHHHHHHhccHHHHHHHHHcCCc-----HH-HHHHHHHHh
Confidence 6788999999999999999988744 46 999999876
No 25
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.47 E-value=24 Score=19.12 Aligned_cols=18 Identities=17% Similarity=0.564 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037321 4 REHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 4 ~~~i~~~i~~~wK~ln~e 21 (75)
..+|..++.+.|+.|..+
T Consensus 48 ~~eisk~lg~~Wk~ls~e 65 (90)
T 1wgf_A 48 ESELTRLLARMWNDLSEK 65 (90)
T ss_dssp HHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHhCCHH
Confidence 356788899999886543
No 26
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=29.38 E-value=28 Score=18.07 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037321 4 REHIHDLIAQTWMKMNR 20 (75)
Q Consensus 4 ~~~i~~~i~~~wK~ln~ 20 (75)
..+|..++.+.|+.|..
T Consensus 30 ~~eisk~lg~~Wk~ls~ 46 (79)
T 3u2b_C 30 NAEISKRLGKRWKLLKD 46 (79)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 35688889999987543
No 27
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=28.67 E-value=29 Score=18.62 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e 21 (75)
.+|..++.+.|+.|..+
T Consensus 46 ~eisk~lg~~Wk~ls~e 62 (87)
T 2e6o_A 46 RAISVILGDRWKKMKNE 62 (87)
T ss_dssp HHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhhCCHH
Confidence 46788899999886543
No 28
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=28.43 E-value=18 Score=18.78 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 037321 6 HIHDLIAQTWMKMN 19 (75)
Q Consensus 6 ~i~~~i~~~wK~ln 19 (75)
.|.+++.+.|+.|.
T Consensus 34 eisk~lg~~Wk~ls 47 (76)
T 1hry_A 34 EISKQLGYQWKMLT 47 (76)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHhHHHhCC
Confidence 57778888887654
No 29
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=28.42 E-value=30 Score=17.44 Aligned_cols=16 Identities=6% Similarity=0.544 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNR 20 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~ 20 (75)
..|.+++.+.|+.|..
T Consensus 31 ~eisk~lg~~Wk~ls~ 46 (71)
T 4a3n_A 31 AELSKMLGKSWKALTL 46 (71)
T ss_dssp HHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhcCCH
Confidence 5678888999987543
No 30
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=27.35 E-value=55 Score=15.20 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=14.6
Q ss_pred HHHHHhhccCCCCCCCchhhHHHHHHhhccc
Q 037321 42 RMSQCMYQFGEGHGHGVQEITKARVLSLIVD 72 (75)
Q Consensus 42 R~~~~~Y~~~Dg~t~~~~~~~k~~I~sll~~ 72 (75)
.++.=+|.+||. + +|..|..-+.+
T Consensus 10 ~~fk~iY~~gdd------d-~kram~KS~~e 33 (35)
T 2jtt_C 10 NVLKKIYEDGDD------D-MKRTINKAWVE 33 (35)
T ss_dssp HHHHHHHTTCCS------S-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCH------H-HHHHHHHHHhh
Confidence 456677988875 3 55555554443
No 31
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=27.12 E-value=33 Score=16.37 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.2
Q ss_pred CcHHHHHHHHHHHHHH
Q 037321 29 VSDVFVGIAMNLARMS 44 (75)
Q Consensus 29 ~p~~~~~~~~NlaR~~ 44 (75)
+|..+++..+++||.=
T Consensus 7 vp~~LL~~lle~Ar~~ 22 (38)
T 2rmg_A 7 VPIGLLQILLEQARAR 22 (38)
T ss_dssp TTHHHHHHHHHTSHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8999999999999853
No 32
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=25.94 E-value=75 Score=17.86 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 037321 1 REAREHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~ln~e 21 (75)
|+|..++..||++.-+.+-..
T Consensus 6 e~aL~~vn~lID~~v~k~~~D 26 (88)
T 3cqx_C 6 EESLKHATRIIDEVVSKFLDD 26 (88)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999988776554
No 33
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=25.69 E-value=35 Score=17.87 Aligned_cols=33 Identities=6% Similarity=0.120 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhh
Q 037321 5 EHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMY 48 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y 48 (75)
.+|..++.+.|+.|.. .-+....+.|.-.---|
T Consensus 35 ~eisk~lg~~Wk~ls~-----------~eK~~y~~~A~~~k~~y 67 (83)
T 3f27_D 35 AELSKMLGKSWKALTL-----------AEKRPFVEEAERLRVQH 67 (83)
T ss_dssp HHHHHHHHHHHHHSCH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHHH
Confidence 5678888899987543 44445555555444444
No 34
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.51 E-value=24 Score=18.85 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037321 4 REHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 4 ~~~i~~~i~~~wK~ln~e 21 (75)
..+|..++.+.|+.|..+
T Consensus 45 ~~eisk~lg~~Wk~ls~~ 62 (86)
T 2eqz_A 45 FAEFSKKCSERWKTMSGK 62 (86)
T ss_dssp HHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHhCCHH
Confidence 367888888899876543
No 35
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=25.43 E-value=22 Score=18.81 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhccC-CCCC
Q 037321 6 HIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMYQFG-EGHG 55 (75)
Q Consensus 6 ~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t 55 (75)
.|..++.+.|+. +|..-++.....|....--|... .+|.
T Consensus 37 eisk~lg~~Wk~-----------ls~~eK~~y~~~A~~~k~~y~~~~~~yk 76 (82)
T 1wz6_A 37 GATKILADWWAV-----------LDPKEKQKYTDMAKEYKDAFMKANPGYR 76 (82)
T ss_dssp HHHHHHHHHHHT-----------CCHHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred HHHHHHHHHHhh-----------CCHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 567788888875 44455666666666666666443 3443
No 36
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=25.37 E-value=17 Score=18.60 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNR 20 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~ 20 (75)
..|.+++.+.|+.|..
T Consensus 32 ~eisk~lg~~Wk~ls~ 47 (71)
T 1ckt_A 32 SEFSKKCSERWKTMSA 47 (71)
T ss_dssp HHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhhCCH
Confidence 6788889999987654
No 37
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=25.26 E-value=27 Score=18.08 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNR 20 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~ 20 (75)
.+|..++.+.|+.|..
T Consensus 35 ~eisk~lg~~Wk~ls~ 50 (77)
T 1hme_A 35 GDVAKKLGEMWNNTAA 50 (77)
T ss_dssp HHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhCCH
Confidence 5688899999998754
No 38
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.06 E-value=25 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNRD 21 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e 21 (75)
.+|.+++.+.||.|..+
T Consensus 36 ~eisk~lg~~Wk~ls~e 52 (92)
T 2cs1_A 36 EDATLQIEELWKTLSEE 52 (92)
T ss_dssp HHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHhcCCHH
Confidence 56788889999876654
No 39
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=22.95 E-value=1.2e+02 Score=23.25 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH------HHHHhhccCCCC
Q 037321 4 REHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLAR------MSQCMYQFGEGH 54 (75)
Q Consensus 4 ~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR------~~~~~Y~~~Dg~ 54 (75)
++-|+.+|+.=|..+|+-.-. . +|+.+..+.+|-++ .+.-+|..||--
T Consensus 679 ~e~~~~l~~sy~~iv~k~~~d--~-~pk~im~~~vn~~k~~~~~el~~~ly~~~~~~ 732 (772)
T 3zvr_A 679 VETIRNLVDSYMAIVNKTVRD--L-MPKTIMHLMINNTKEFIFSELLANLYSCGDQN 732 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHTHHHHHHHHHHTHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 467899999999998886652 3 89999999999765 344568887643
No 40
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.95 E-value=51 Score=17.42 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 037321 1 REAREHIHDLIAQTWMKM 18 (75)
Q Consensus 1 EeA~~~i~~~i~~~wK~l 18 (75)
+||+..+...+++++...
T Consensus 11 ~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 11 DEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 488999999998888644
No 41
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=22.86 E-value=24 Score=18.44 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhh
Q 037321 5 EHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMY 48 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y 48 (75)
..|..++.+.|+.| |..-+......|.-.---|
T Consensus 31 ~eisk~lg~~Wk~l-----------s~eeK~~y~~~A~~~k~~y 63 (80)
T 1gt0_D 31 SEISKRLGAEWKLL-----------SETEKRPFIDEAKRLRALH 63 (80)
T ss_dssp HHHHHHHHHHHTTS-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHH
Confidence 46778888888754 4444555555555444444
No 42
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.68 E-value=25 Score=18.78 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhh
Q 037321 5 EHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMY 48 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y 48 (75)
.+|..++.+.|+.| |..-+....+.|....--|
T Consensus 31 ~eisk~lg~~Wk~l-----------s~eeK~~y~~~A~~~k~~y 63 (86)
T 2lef_A 31 AAINQILGRRWHAL-----------SREEQAKYYELARKERQLH 63 (86)
T ss_dssp HHHHHHHHHHHTTS-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHH
Confidence 46777888888754 4444555555555444444
No 43
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=22.39 E-value=29 Score=17.90 Aligned_cols=14 Identities=14% Similarity=0.378 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKM 18 (75)
Q Consensus 5 ~~i~~~i~~~wK~l 18 (75)
.+|.+++.+.||.|
T Consensus 32 ~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 32 TEIAKKGGEMWKEL 45 (73)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 56888999999988
No 44
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=22.25 E-value=1.1e+02 Score=20.25 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHH---HHHHHHHh----hcCCCCCcHHHHHHHHHHHHHHHHhh
Q 037321 2 EAREHIHDLIAQT---WMKMNRDR----FVNPHFVSDVFVGIAMNLARMSQCMY 48 (75)
Q Consensus 2 eA~~~i~~~i~~~---wK~ln~e~----l~~~~~~p~~~~~~~~NlaR~~~~~Y 48 (75)
|..+.++.++++. -+-|++-. +++.+ +|...++.+++.||.+.--.
T Consensus 129 ~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~-V~~e~l~~ileaA~~APS~~ 181 (322)
T 4eo3_A 129 EVKEALDRLIEEDLSLNKHIEWRRARRALKKDR-VPREELELLIKAAHLAPSCM 181 (322)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCC-CCHHHHHHHHHHHHTSCCGG
T ss_pred HHHHHHhhhchhhhHHHHHHHhhhccCCcCccc-cCHHHHHHHHHHHHhCcCcC
Confidence 5667777777654 22222221 33557 99999999999999876443
No 45
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=21.86 E-value=28 Score=17.55 Aligned_cols=16 Identities=6% Similarity=0.401 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNR 20 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~ 20 (75)
..|.+++.+.||.|..
T Consensus 27 ~ei~k~lg~~Wk~ls~ 42 (67)
T 3fgh_A 27 QEKLKTVKENWKNLSD 42 (67)
T ss_dssp HHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHhhCCH
Confidence 3567788888887654
No 46
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=21.31 E-value=1.1e+02 Score=16.76 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 037321 2 EAREHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLA 41 (75)
Q Consensus 2 eA~~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~Nla 41 (75)
+....+-.++++..+++.+.+=. .+ ..+..+..++|+|
T Consensus 26 e~l~~aA~~vd~~~~~i~~~~~~-~~-~~r~~vmaALnla 63 (104)
T 1t3u_A 26 ANLESAARYLDGKMREIRSSGKV-IG-ADRVAVMAALNIT 63 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCS-CS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CC-HHHHHHHHHHHHH
Confidence 56667777788877777664321 12 3466778888887
No 47
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=20.97 E-value=37 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhc
Q 037321 10 LIAQTWMKMNRDRFV 24 (75)
Q Consensus 10 ~i~~~wK~ln~e~l~ 24 (75)
+-+.-|..+|++|+.
T Consensus 48 ~K~~iW~~~N~dyL~ 62 (72)
T 1ngm_B 48 LKERIWIGLNADFLL 62 (72)
T ss_dssp HHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 445679999999984
No 48
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=20.64 E-value=29 Score=18.49 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhh
Q 037321 5 EHIHDLIAQTWMKMNRDRFVNPHFVSDVFVGIAMNLARMSQCMY 48 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~e~l~~~~~~p~~~~~~~~NlaR~~~~~Y 48 (75)
.+|..++.+.|+.| |..-+....+.|.-..--|
T Consensus 33 ~eisk~lg~~Wk~l-----------s~eeK~~y~~~A~~~k~~y 65 (85)
T 1j46_A 33 SEISKQLGYQWKML-----------TEAEKWPFFQEAQKLQAMH 65 (85)
T ss_dssp HHHHHHHHHHHTTS-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHH
Confidence 45777788888654 4455555666665554445
No 49
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=20.31 E-value=27 Score=19.36 Aligned_cols=16 Identities=0% Similarity=0.316 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 037321 5 EHIHDLIAQTWMKMNR 20 (75)
Q Consensus 5 ~~i~~~i~~~wK~ln~ 20 (75)
..|..++.+.|+.|..
T Consensus 39 ~eisk~lg~~Wk~ls~ 54 (99)
T 1k99_A 39 LDLTKILSKKYKELPE 54 (99)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCH
Confidence 5688899999998654
No 50
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=20.18 E-value=1.4e+02 Score=17.27 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=20.2
Q ss_pred HHHHHHHHhhccCC-CCCCCchhhHHHHHHhhc
Q 037321 39 NLARMSQCMYQFGE-GHGHGVQEITKARVLSLI 70 (75)
Q Consensus 39 NlaR~~~~~Y~~~D-g~t~~~~~~~k~~I~sll 70 (75)
++..+++++|+.-| +|..+... ..|.|-.+|
T Consensus 48 dF~~if~fL~~~idp~~~~~~~~-~eeev~~~l 79 (120)
T 2igp_A 48 DFLKIFTFLYGFLCPSYELPDTK-FEEEVPRIF 79 (120)
T ss_dssp HHHHHHHHHHTTTCTTCCCCCTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccCCCC-hHHHHHHHH
Confidence 44566889998887 46554345 777766654
Done!