BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037325
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 178/380 (46%), Gaps = 56/380 (14%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
+ LD+S+N+F++ P +L + ++L LD+ N L GD ++ L+ L++S N F+G
Sbjct: 200 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
L +L+ + L+ N + E+ DFL G + L L+L N F G +P
Sbjct: 259 PIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT-----LTGLDLSGNHFYGAVPPF 310
Query: 363 LG-------------------------SLKNLRHLVLWQNSFLGSIPPSIGNLTL-LKEL 396
G ++ L+ L L N F G +P S+ NL+ L L
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLN--KARISDTISDWFWQLSLTLDELDVAYN 454
L+SN +G + + Q+ KN + L N +I T+S+ +SL L ++N
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL-----SFN 425
Query: 455 ELRGRVPNSLG-FNFPAKVDLSFNNFEGRL---LLWSFNVTKLYLRDNSFSGLIPNDIGQ 510
L G +P+SLG + + L N EG + L++ + L L N +G IP
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP----- 480
Query: 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR 570
+ L N L + +SNN L+GEIP + L IL +SNNS SG+ P +G R
Sbjct: 481 -----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 571 TVKFLVLRNNYLSGKLPLSL 590
++ +L L N +G +P ++
Sbjct: 536 SLIWLDLNTNLFNGTIPAAM 555
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 164/354 (46%), Gaps = 38/354 (10%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
Q L L NN F P L N + L+ L L N L G IP SL+ L++L L N L
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLE 452
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
G++ + L + L T+IL N+++ E+ GLS CTN L + L N+ TG +P
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTN---LNWISLSNNRLTGEIPKW 506
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
+G L+NL L L NSF G+IP +G+ L L L +N NG + + K ++
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF---KQSGKIA 563
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKV---------D 473
+ R +D + L + + +R N L P +
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 474 LSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533
+F+N G ++ L + N SG IP +IG +P+L L + +N+
Sbjct: 623 PTFDN-NGSMMF-------LDMSYNMLSGYIPKEIGS-MPYL---------FILNLGHND 664
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
+SG IP ++ L ILD+S+N L G P+++ +L + + L NN LSG +P
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 172/396 (43%), Gaps = 68/396 (17%)
Query: 250 NDFNSTTP-HWLFNITSLLCLDLGSNDLQGDIPDGFASLN-SLQELDLSGNSFLGGQLSR 307
N+F+ P L + L LDL N+ G++P+ +L+ SL LDLS N+F G L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 308 NLGKLC-----NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
LC L+ + L N + ++ L SE L L L FN +G +P S
Sbjct: 385 ----LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE------LVSLHLSFNYLSGTIPSS 434
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
LGSL LR L LW N G IP + + L+ L L N + G+ S L N T L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG----LSNCTNLN 490
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEG 481
+ L+ R++ I W +L L L ++ N G +P LG +DL+ N F G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 482 RLLLWSFNVTK------------LYLRD------------------------NSFSGLIP 505
+ F + +Y+++ N S P
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 506 NDI------GQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
+I G P + G ++ L +S N LSG IP ++ +L+IL++ +N +S
Sbjct: 610 CNITSRVYGGHTSPTFDNNG---SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTF 595
GS P+ +G LR + L L +N L G++P ++ T
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 170/385 (44%), Gaps = 66/385 (17%)
Query: 245 LDLSNNDFNS--TTPHWLFNITSLLCLDLGSN--DLQGDIPDGFASLNSLQELDLSGNSF 300
LDLS N + TT L + + L L++ SN D G + G LNSL+ LDLS NS
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSI 160
Query: 301 LGGQ-----LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF 355
G LS G+ L+ + +S N IS +V +S C N LE L++ N F
Sbjct: 161 SGANVVGWVLSDGCGE---LKHLAISGNKISGDVD-----VSRCVN---LEFLDVSSNNF 209
Query: 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415
+ +P LG L+HL + N G +I T LK L ++SNQ G +
Sbjct: 210 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-- 266
Query: 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF--------- 466
L+ L L + + + I D+ TL LD++ N G VP G
Sbjct: 267 ----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 467 ---NFPAK--------------VDLSFNNFEGRLLLWSFNVTK----LYLRDNSFSGLIP 505
NF + +DLSFN F G L N++ L L N+FSG I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565
++ QN L L + NN +G+IP SN S L L +S N LSG+ P S
Sbjct: 383 PNLCQNPK--------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 566 IGSLRTVKFLVLRNNYLSGKLPLSL 590
+GSL ++ L L N L G++P L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQEL 459
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 144/534 (26%), Positives = 199/534 (37%), Gaps = 130/534 (24%)
Query: 95 DDAGHELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154
D +G++L G+ S + S N F G +P LK L+YL+L+ + F+G I
Sbjct: 226 DISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 155 PQTXXXXXXXXXXXXXXXXDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL--EVFN 212
P ++LSG L G DLS Y F
Sbjct: 283 P--------------------------DFLSGACD----TLTGLDLSGNHFYGAVPPFFG 312
Query: 213 KLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFNSTTPHWLFNIT-SLLCLDL 271
+VLDLS N+F+ P L N++ SLL LDL
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 272 GSNDLQGDIPDGFAS--LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329
SN+ G I N+LQEL L N F G ++
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-------------------------KI 407
Query: 330 SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L SE L L L FN +G +P SLGSL LR L LW N G IP +
Sbjct: 408 PPTLSNCSE------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
+ L+ L L N + G+ S L N T L + L+ R++ I W +L L L
Sbjct: 462 VKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAIL 516
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDI- 508
++ N G +P LG + R L+W L L N F+G IP +
Sbjct: 517 KLSNNSFSGNIPAELG--------------DCRSLIW------LDLNTNLFNGTIPAAMF 556
Query: 509 ------------GQNLPFLTD---------LGNL--------KQLITLV------ISNNN 533
G+ ++ + GNL +QL L I++
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
G F N + LDMS N LSG P+ IGS+ + L L +N +SG +P
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 22/252 (8%)
Query: 99 HELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTX 158
++L GEI S N TG ++P++IG L+ L L LS + FSG IP
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 159 XXXXXXX----------XXXXXXXXDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL 208
QS +I +++G VY G GA L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGAGNL 590
Query: 209 --------EVFNKLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFNSTTPHWL 260
E N+L S LD+S N + P +
Sbjct: 591 LEFQGIRSEQLNRL-STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320
++ L L+LG ND+ G IPD L L LDLS N L G++ + + L L + L
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTEIDL 708
Query: 321 SRNNISSEVSDF 332
S NN+S + +
Sbjct: 709 SNNNLSGPIPEM 720
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 33/214 (15%)
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT-LDELDVAYNE 455
+L+++ +NG S K L +L L++ +S ++ S + L L+V+ N
Sbjct: 80 FLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 134
Query: 456 L--RGRVPNSLGFNFPAKVDLSFNNFEG-RLLLWSFN-----VTKLYLRDNSFSGLI--- 504
L G+V L N +DLS N+ G ++ W + + L + N SG +
Sbjct: 135 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 505 -----------PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553
N+ +PFL D L+ L IS N LSG+ S + L +L++
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPFLGDCSALQH---LDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
S+N G P L+++++L L N +G++P
Sbjct: 252 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 283
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 178/380 (46%), Gaps = 56/380 (14%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
+ LD+S+N+F++ P +L + ++L LD+ N L GD ++ L+ L++S N F+G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
L +L+ + L+ N + E+ DFL G + L L+L N F G +P
Sbjct: 262 PIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT-----LTGLDLSGNHFYGAVPPF 313
Query: 363 LG-------------------------SLKNLRHLVLWQNSFLGSIPPSIGNLTL-LKEL 396
G ++ L+ L L N F G +P S+ NL+ L L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLN--KARISDTISDWFWQLSLTLDELDVAYN 454
L+SN +G + + Q+ KN + L N +I T+S+ +SL L ++N
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL-----SFN 428
Query: 455 ELRGRVPNSLG-FNFPAKVDLSFNNFEGRL---LLWSFNVTKLYLRDNSFSGLIPNDIGQ 510
L G +P+SLG + + L N EG + L++ + L L N +G IP
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP----- 483
Query: 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR 570
+ L N L + +SNN L+GEIP + L IL +SNNS SG+ P +G R
Sbjct: 484 -----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 571 TVKFLVLRNNYLSGKLPLSL 590
++ +L L N +G +P ++
Sbjct: 539 SLIWLDLNTNLFNGTIPAAM 558
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 164/354 (46%), Gaps = 38/354 (10%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
Q L L NN F P L N + L+ L L N L G IP SL+ L++L L N L
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLE 455
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
G++ + L + L T+IL N+++ E+ GLS CTN L + L N+ TG +P
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTN---LNWISLSNNRLTGEIPKW 509
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
+G L+NL L L NSF G+IP +G+ L L L +N NG + + K ++
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF---KQSGKIA 566
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKV---------D 473
+ R +D + L + + +R N L P +
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 474 LSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533
+F+N G ++ L + N SG IP +IG +P+L L + +N+
Sbjct: 626 PTFDN-NGSMMF-------LDMSYNMLSGYIPKEIGS-MPYL---------FILNLGHND 667
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
+SG IP ++ L ILD+S+N L G P+++ +L + + L NN LSG +P
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 172/396 (43%), Gaps = 68/396 (17%)
Query: 250 NDFNSTTP-HWLFNITSLLCLDLGSNDLQGDIPDGFASLN-SLQELDLSGNSFLGGQLSR 307
N+F+ P L + L LDL N+ G++P+ +L+ SL LDLS N+F G L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 308 NLGKLC-----NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
LC L+ + L N + ++ L SE L L L FN +G +P S
Sbjct: 388 ----LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE------LVSLHLSFNYLSGTIPSS 437
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
LGSL LR L LW N G IP + + L+ L L N + G+ S L N T L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG----LSNCTNLN 493
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEG 481
+ L+ R++ I W +L L L ++ N G +P LG +DL+ N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 482 RLLLWSFNVTK------------LYLRD------------------------NSFSGLIP 505
+ F + +Y+++ N S P
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 506 NDI------GQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
+I G P + G ++ L +S N LSG IP ++ +L+IL++ +N +S
Sbjct: 613 CNITSRVYGGHTSPTFDNNG---SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTF 595
GS P+ +G LR + L L +N L G++P ++ T
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 170/385 (44%), Gaps = 66/385 (17%)
Query: 245 LDLSNNDFNS--TTPHWLFNITSLLCLDLGSN--DLQGDIPDGFASLNSLQELDLSGNSF 300
LDLS N + TT L + + L L++ SN D G + G LNSL+ LDLS NS
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSI 163
Query: 301 LGGQ-----LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF 355
G LS G+ L+ + +S N IS +V +S C N LE L++ N F
Sbjct: 164 SGANVVGWVLSDGCGE---LKHLAISGNKISGDVD-----VSRCVN---LEFLDVSSNNF 212
Query: 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415
+ +P LG L+HL + N G +I T LK L ++SNQ G +
Sbjct: 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-- 269
Query: 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF--------- 466
L+ L L + + + I D+ TL LD++ N G VP G
Sbjct: 270 ----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 467 ---NFPAK--------------VDLSFNNFEGRLLLWSFNVTK----LYLRDNSFSGLIP 505
NF + +DLSFN F G L N++ L L N+FSG I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565
++ QN L L + NN +G+IP SN S L L +S N LSG+ P S
Sbjct: 386 PNLCQNPK--------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 566 IGSLRTVKFLVLRNNYLSGKLPLSL 590
+GSL ++ L L N L G++P L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQEL 462
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 144/534 (26%), Positives = 199/534 (37%), Gaps = 130/534 (24%)
Query: 95 DDAGHELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154
D +G++L G+ S + S N F G +P LK L+YL+L+ + F+G I
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 155 PQTXXXXXXXXXXXXXXXXDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL--EVFN 212
P ++LSG L G DLS Y F
Sbjct: 286 P--------------------------DFLSGACD----TLTGLDLSGNHFYGAVPPFFG 315
Query: 213 KLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFNSTTPHWLFNIT-SLLCLDL 271
+VLDLS N+F+ P L N++ SLL LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 272 GSNDLQGDIPDGFA--SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329
SN+ G I N+LQEL L N F G ++
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-------------------------KI 410
Query: 330 SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L SE L L L FN +G +P SLGSL LR L LW N G IP +
Sbjct: 411 PPTLSNCSE------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
+ L+ L L N + G+ S L N T L + L+ R++ I W +L L L
Sbjct: 465 VKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAIL 519
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDI- 508
++ N G +P LG + R L+W L L N F+G IP +
Sbjct: 520 KLSNNSFSGNIPAELG--------------DCRSLIW------LDLNTNLFNGTIPAAMF 559
Query: 509 ------------GQNLPFLTD---------LGNL--------KQLITLV------ISNNN 533
G+ ++ + GNL +QL L I++
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
G F N + LDMS N LSG P+ IGS+ + L L +N +SG +P
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 22/252 (8%)
Query: 99 HELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTX 158
++L GEI S N TG ++P++IG L+ L L LS + FSG IP
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 159 XXXXXXX----------XXXXXXXXDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL 208
QS +I +++G VY G GA L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGAGNL 593
Query: 209 --------EVFNKLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFNSTTPHWL 260
E N+L S LD+S N + P +
Sbjct: 594 LEFQGIRSEQLNRL-STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320
++ L L+LG ND+ G IPD L L LDLS N L G++ + + L L + L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTEIDL 711
Query: 321 SRNNISSEVSDF 332
S NN+S + +
Sbjct: 712 SNNNLSGPIPEM 723
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 33/214 (15%)
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT-LDELDVAYNE 455
+L+++ +NG S K L +L L++ +S ++ S + L L+V+ N
Sbjct: 83 FLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137
Query: 456 L--RGRVPNSLGFNFPAKVDLSFNNFEG-RLLLWSFN-----VTKLYLRDNSFSGLI--- 504
L G+V L N +DLS N+ G ++ W + + L + N SG +
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 505 -----------PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553
N+ +PFL D L+ L IS N LSG+ S + L +L++
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQH---LDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
S+N G P L+++++L L N +G++P
Sbjct: 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 118/261 (45%), Gaps = 44/261 (16%)
Query: 280 IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339
IP A+L L L + G + L G + + KL L + ++ N+S + DFL +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT- 126
Query: 340 TNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT-LLKELYL 398
L L+ +N +G LP S+ SL NL + N G+IP S G+ + L + +
Sbjct: 127 -----LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458
+ N++ G KI ++ + LN A F LS + E D + L G
Sbjct: 182 SRNRLTG-KIPPTFAN-----------LNLA---------FVDLSRNMLEGDASV--LFG 218
Query: 459 RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL 518
N+ + AK L+F+ G++ L S N+ L LR+N G +P + Q
Sbjct: 219 SDKNTQKIHL-AKNSLAFD--LGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQ-------- 266
Query: 519 GNLKQLITLVISNNNLSGEIP 539
LK L +L +S NNL GEIP
Sbjct: 267 --LKFLHSLNVSFNNLCGEIP 285
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 19/232 (8%)
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDS 411
N G +P ++ L L +L + + G+IP + + L L + N ++G + S
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPS 144
Query: 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK 471
L N L + + RIS I D + S + ++ N L G++P + A
Sbjct: 145 ISSLPN---LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 472 VDLSFNNFEGR---LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLV 528
VDLS N EG L N K++L NS + D+G+ +G K L L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGK-------VGLSKNLNGLD 250
Query: 529 ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
+ NN + G +P + + FL+ L++S N+L G P+ G+L+ NN
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 142/371 (38%), Gaps = 106/371 (28%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWVG-EDCC--SWSGVSCNNRTAS-------VIKLN 81
C +++ALLQ K+ L +P+ LSSW+ DCC +W GV C+ T + + LN
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 LNNPFRD-------SFGSFEDDAG-HELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEF 133
L P+ + +F G + L G I P+ + N +G +P+F
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF 120
Query: 134 IGSLKELRYLNLSGSFFSGTIPQTXXXXXXXXXXXXXXXXDQSNQIDLEWLSGLSSLVYF 193
+ +K L L+ S + SGT+P + +S L +LV
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPS--------------------------ISSLPNLVGI 154
Query: 194 NLGGADLSKAGAYWLEVFNKLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFN 253
G +S A F+KL + + +S N
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFT---------------------------SMTISRNRLT 187
Query: 254 STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC 313
P N+ +L +DL N L+GD F S + Q++ L+ NS L+ +LGK+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-----LAFDLGKVG 241
Query: 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373
LS+N L L+LR N+ G LP L LK L L
Sbjct: 242 ------LSKN---------------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 374 LWQNSFLGSIP 384
+ N+ G IP
Sbjct: 275 VSFNNLCGEIP 285
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTV 572
P + L QL L I++ N+SG IP S I L LD S N+LSG+ P SI SL +
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 573 KFLVLRNNYLSGKLP 587
+ N +SG +P
Sbjct: 152 VGITFDGNRISGAIP 166
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 493 LYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILD 552
LY+ + SG IP+ + Q +K L+TL S N LSG +P S++ L +
Sbjct: 106 LYITHTNVSGAIPDFLSQ----------IKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 553 MSNNSLSGSTPESIGSL-RTVKFLVLRNNYLSGKLPLSLKN 592
N +SG+ P+S GS + + + N L+GK+P + N
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL-QELDLSGNSFLG 302
LD S N + T P + ++ +L+ + N + G IPD + S + L + +S N L
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LT 187
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
G++ L NL + LSRN + + S L G + T I L K L F+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG------K 239
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
+G KNL L L N G++P + L L L ++ N + G+
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 491 TKLYLRDN-SFSGLIPNDIGQNLPFLTDLGNLKQLITLVISN-NNLSGEIPLLFSNISFL 548
T+ Y +N SGL ++ + P + L NL L L I NNL G IP + ++ L
Sbjct: 47 TQTYRVNNLDLSGL---NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
+ L +++ ++SG+ P+ + ++T+ L N LSG LP S+
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSG 297
LDL NN T P L + L L++ N+L G+IP G +LQ D+S
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSA 297
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 42/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 108
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L +SN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSN 161
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
Q+ K L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 162 QVTDLK------PLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 212
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 213 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 259
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 260 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 316 NISDISPVS 324
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 42/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 108
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L +SN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSN 161
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
Q+ K L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 162 QVTDLK------PLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 212
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 213 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 259
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 260 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 316 NISDISPVS 324
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 42/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 108
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L +SN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSN 161
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
Q+ K L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 162 QVTDLK------PLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 212
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 213 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 259
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 260 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 316 NISDISPVS 324
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 112
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L
Sbjct: 113 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--- 162
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
G +++D + L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 163 ---GNQVTD-LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 215
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 216 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 262
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 263 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 318
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 319 NISDISPVS 327
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 113
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L
Sbjct: 114 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--- 163
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
G +++D + L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 164 ---GNQVTD-LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 216
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 217 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 263
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 264 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 320 NISDISPVS 328
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 108
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF--- 158
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
G +++D + L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 159 ---GNQVTD-LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 211
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 212 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 258
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 259 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 314
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 315 NISDISPVS 323
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
DG LN+L +++ S N +NL KL + IL NN +++D + L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD----ILMNNN---QIAD-ITPLANLTN 108
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L L L NQ T I P L +L NL L L N+ S ++ LT L++L
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF--- 158
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
G +++D + L N T L L ++ ++SD +L+ L+ L N++ P
Sbjct: 159 ---GNQVTD-LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP 211
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ N ++ L+ N + L S N+T L L +N S L P L
Sbjct: 212 LGILTNL-DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSG 258
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L +L L + N +S PL + ++ L L+++ N L +P I +L+ + +L L N
Sbjct: 259 LTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 314
Query: 581 YLSGKLPLS 589
+S P+S
Sbjct: 315 NISDISPVS 323
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
+VT+LYL N F+ L+P + L N K L + +SNN +S FSN++ L
Sbjct: 32 DVTELYLDGNQFT-LVPKE----------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L +S N L P + L++++ L L N +S
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
++DLSNN ++ + N+T LL L L N L+ P F L SL+ L L GN
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 473 DLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532
DL + ++ + KLY+ N+ L P+ + QN+P LT LV+ N
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT---------VLVLERN 133
Query: 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
+LS +F N L L MSNN+L ++ + +++ L L +N L+
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG 303
VL L ND +S N L L + +N+L+ D F + SLQ L LS N
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 304 QLS 306
LS
Sbjct: 187 DLS 189
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 28/320 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDLG N ++ D FAS L+EL+L+ N + L NLRT+ L N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG 388
GLS T KL++ N+ +L L NL+ L + N + +
Sbjct: 96 PLGVFTGLSNLT------KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDE 448
L L++L L + +++ HL LR LN + I D+ ++ L
Sbjct: 150 GLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN----INAIRDYSFKRLYRLKV 204
Query: 449 LDVAY-NELRGRVPNSL-GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN 506
L++++ L PN L G N + ++ N L ++ L + S++ + +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI--S 261
Query: 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG---STP 563
I ++ L L +L + + L+ P F +++L +L++S N L+ S
Sbjct: 262 TIEGSM-----LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316
Query: 564 ESIGSLRTVKFLVLRNNYLS 583
S+G+L T L+L +N L+
Sbjct: 317 HSVGNLET---LILDSNPLA 333
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 260 LFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318
L +T+L L L N LQ +P+G F L +L+EL L N L KL NL +
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYL 138
Query: 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS 378
L+ N + S D L+ T +L+L +NQ + L L+ L L+QN
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLT------ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 379 FLGSIPPSI-GNLTLLKELYLASN 401
L S+P + LT L+ ++L N
Sbjct: 193 -LKSVPDGVFDRLTSLQYIWLHDN 215
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 362 SLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
+L L NL +L+L N L S+P + LT LKEL L NQ+ Q + D T
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL--QSLPDGV--FDKLTN 134
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
L L L ++ F +L+ L ELD++YN+L+
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQ 170
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 473 DLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532
DL + ++ + KLY+ N+ L P+ + QN+P LT LV+ N
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT---------VLVLERN 127
Query: 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
+LS +F N L L MSNN+L ++ + +++ L L +N L+
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG 303
VL L ND +S N L L + +N+L+ D F + SLQ L LS N
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 304 QLS 306
LS
Sbjct: 181 DLS 183
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
QVL L ++ N+ +++ SL LDL N L F L+SL+ L+L GN +
Sbjct: 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVS--DFLDGLSECTNSILLEKLELRFNQFTGILP 360
++ L NL+T+ + SE+ DF GL+ N + ++ L LR Q
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTS-LNELEIKALSLRNYQSQ---- 166
Query: 361 ISLGSLKNLRHLVLW--QNSFLGSI 383
SL S++++ HL L +++FL I
Sbjct: 167 -SLKSIRDIHHLTLHLSESAFLLEI 190
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
QVL L ++ N+ +++ SL LDL N L F L+SL+ L+L GN +
Sbjct: 79 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 138
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVS--DFLDGLSECTNSILLEKLELRFNQFTGILP 360
++ L NL+T+ + SE+ DF GL+ N + ++ L LR Q
Sbjct: 139 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTS-LNELEIKALSLRNYQSQ---- 192
Query: 361 ISLGSLKNLRHLVL 374
SL S++++ HL L
Sbjct: 193 -SLKSIRDIHHLTL 205
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 19/163 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSF--LGGQLSRNLGKLCNLRTMILSRNNIS 326
LDL SN L F L L+ L L+ N L + + L NL T+ ++ N +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK---NLETLWVTDNKLQ 98
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPS 386
+ D L + L +L L NQ + P SL L +L L N L S+P
Sbjct: 99 ALPIGVFDQL------VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKG 151
Query: 387 I-GNLTLLKELYLASNQMNGQKISD-SYQHLKNQTELRTLVLN 427
+ LT LKEL L +NQ+ +++ + ++ L TEL+TL L+
Sbjct: 152 VFDKLTSLKELRLYNNQL--KRVPEGAFDKL---TELKTLKLD 189
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 269 LDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327
LDL +N L+ +P+G F L SL +L L GN L + KL +L + LS N + S
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387
+ D L++ L++L L NQ + L L+ L L+QN L S+P +
Sbjct: 91 LPNGVFDKLTQ------LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV 143
Query: 388 -GNLTLLKELYLASN 401
LT L+ ++L N
Sbjct: 144 FDRLTSLQYIWLHDN 158
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 245 LDLSNNDFNSTTPHWLFN-ITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLG 302
LDL N S P+ +F+ +TSL L LG N LQ +P+G F L SL L+LS N L
Sbjct: 33 LDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQ 89
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
+ KL L+ + L+ N + S D L++ L+ L L NQ +
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ------LKDLRLYQNQLKSVPDGV 143
Query: 363 LGSLKNLRHLVLWQNSFLGSIP 384
L +L+++ L N + + P
Sbjct: 144 FDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN--G 405
L+L+ N+ T I +LKNL L+L N P + L L+ LYL+ NQ+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 406 QKISDSYQHLKNQ----TELRTLVLN 427
+K+ + Q L+ T++R V N
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFN 142
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG 303
+LDL NN N+ +L L L +N + P FA L L+ L LS N
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--K 113
Query: 304 QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363
+L + K L+ + + N I+ +GL N +++ +L + +GI +
Sbjct: 114 ELPEKMPK--TLQELRVHENEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAF 167
Query: 364 GSLKNLRHLVLWQ---NSFLGSIPPSIGNLTLLKELYLASNQM 403
+K L ++ + + +PPS L EL+L N++
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKI 204
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN--G 405
L+L+ N+ T I +LKNL L+L N P + L L+ LYL+ NQ+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 406 QKISDSYQHLKNQ----TELRTLVLN 427
+K+ + Q L+ T++R V N
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFN 142
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG 303
+LDL NN N+ +L L L +N + P FA L L+ L LS N
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--K 113
Query: 304 QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363
+L + K L+ + + N I+ +GL N +++ +L + +GI +
Sbjct: 114 ELPEKMPK--TLQELRVHENEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAF 167
Query: 364 GSLKNLRHLVLWQ---NSFLGSIPPSIGNLTLLKELYLASNQM 403
+K L ++ + + +PPS L EL+L N++
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKI 204
>pdb|3S05|A Chain A, Meos2 Fluorescent Protein-Green Form
pdb|3S05|B Chain B, Meos2 Fluorescent Protein-Green Form
pdb|3S05|C Chain C, Meos2 Fluorescent Protein-Green Form
pdb|3S05|D Chain D, Meos2 Fluorescent Protein-Green Form
Length = 224
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A+ D I D+F W+ SLT + E D YN++R G
Sbjct: 67 AKYPDNIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVR-----FYGT 121
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 122 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 155
>pdb|2VVJ|A Chain A, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|B Chain B, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|C Chain C, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|D Chain D, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
Length = 226
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A D I D+F W+ SLT + E D YN++R G
Sbjct: 69 AEYPDHIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVRFH-----GV 123
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 124 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 157
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 520 NLKQLITLV-ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLR 578
NL + IT + + N + P FS L +D+SNN +S P++ LR++ LVL
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 579 NNYLSGKLPLSL 590
N ++ +LP SL
Sbjct: 89 GNKIT-ELPKSL 99
>pdb|2VVH|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVI|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
Length = 226
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A D I D+F W+ SLT + E D YN++R G
Sbjct: 69 AEYPDHIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVRFH-----GV 123
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 124 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 157
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 520 NLKQLITLV-ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLR 578
NL + IT + + N + P FS L +D+SNN +S P++ LR++ LVL
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 579 NNYLSGKLPLSL 590
N ++ +LP SL
Sbjct: 89 GNKIT-ELPKSL 99
>pdb|3TMR|A Chain A, Irisfp, Planar Chromophore
pdb|3TMR|B Chain B, Irisfp, Planar Chromophore
pdb|3TMR|C Chain C, Irisfp, Planar Chromophore
pdb|3TMR|D Chain D, Irisfp, Planar Chromophore
pdb|3TMT|A Chain A, Irisfp, Distorted Chromophore
pdb|3TMT|B Chain B, Irisfp, Distorted Chromophore
pdb|3TMT|C Chain C, Irisfp, Distorted Chromophore
pdb|3TMT|D Chain D, Irisfp, Distorted Chromophore
Length = 230
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A D I D+F W+ SLT + E D YN++R G
Sbjct: 73 AEYPDHIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVRFH-----GV 127
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 128 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 161
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGN------ 298
LDLSNN + L +L L L SN + D F+SL SL+ LDLS N
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 299 ----------SFLG--GQLSRNLGK------LCNLRTMILSRNNISSEV--SDFLDGLSE 338
+FL G + LG+ L L+ + + + +++ DF GL+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLT- 174
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374
LE+LE+ + P SL S++N+ HL+L
Sbjct: 175 -----FLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|2BTJ|A Chain A, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|B Chain B, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|C Chain C, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|D Chain D, Fluorescent Protein Eosfp- Red Form
Length = 222
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A D I D+F W+ SLT + E D YN++R G
Sbjct: 69 AEYPDHIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVRFH-----GV 123
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 124 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 157
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGN------ 298
LDLSNN + L +L L L SN + D F+SL SL+ LDLS N
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 299 ----------SFLG--GQLSRNLGK------LCNLRTMILSRNNISSEV--SDFLDGLSE 338
+FL G + LG+ L L+ + + + +++ DF GL+
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLT- 148
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374
LE+LE+ + P SL S++N+ HL+L
Sbjct: 149 -----FLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
>pdb|1ZUX|A Chain A, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|B Chain B, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|C Chain C, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|D Chain D, Eosfp Fluorescent Protein- Green Form
Length = 224
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 429 ARISDTISDWF---------WQLSLTLD-------------ELDVAYNELRGRVPNSLGF 466
A D I D+F W+ SLT + E D YN++R G
Sbjct: 67 AEYPDHIQDYFKQSFPKGYSWERSLTFEDGGICIARNDITMEGDTFYNKVRFH-----GV 121
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
NFPA + + + L W + K+Y+RD +G I
Sbjct: 122 NFPANGPV----MQKKTLKWEPSTEKMYVRDGVLTGDI 155
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L L ++ N+L+ E+P N+S L +LD+S+N L+ S P +GS +K+ +N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 584 GKLPLSLKN-CTFQ 596
LP N C Q
Sbjct: 307 T-LPWEFGNLCNLQ 319
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
+IPD N+ + L+ S N FL +R +L NL + L+R I+ D +
Sbjct: 23 EIPDTLP--NTTEFLEFSFN-FLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQ 79
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN--SFLGSIPPSIGNLTLLKEL 396
L L L N + SL K+L+HL L Q S L IP + NL L+ L
Sbjct: 80 ------LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIP--VHNLENLESL 131
Query: 397 YLASNQMNGQKISDSY 412
YL SN ++ K +
Sbjct: 132 YLGSNHISSIKFPKDF 147
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 18/236 (7%)
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
LL+KL L N F + IS + +L HL + N + + +G L L L
Sbjct: 299 LLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSH 356
Query: 404 NGQKISDSYQ-HLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
N + SD LKN + L+TL L+ S F + L+ LD+A+ L P
Sbjct: 357 NDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP-QLELLDLAFTRLHINAPQ 415
Query: 463 S----LGFNFPAKVDLSFNNFEGRLLLWSFNVTK-LYLRDNSFS-GLIPNDIGQNLPFLT 516
S L F + F + + LL V + L L+ N F G I L
Sbjct: 416 SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT-----NLLQ 470
Query: 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTV 572
+G+L+ L++S+ L F ++ + +D+S+NSL+ + +S+ L+ +
Sbjct: 471 TVGSLE---VLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI 523
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNS----FLGGQLSRNLGKLCNLRTMILSRNN 324
L+ N + G ++L LQ L L N F +++N+ +L T+ +S N+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS---SLETLDVSLNS 414
Query: 325 ISSEVSDFLDGLSECTNSILLEKLELRFNQFTG----ILPISLGSLKNLRHLVLWQNSFL 380
++S D +E SIL+ L L N TG LP + L N+ +
Sbjct: 415 LNSHAYDRTCAWAE---SILV--LNLSSNMLTGSVFRCLPPKVKVLD-------LHNNRI 462
Query: 381 GSIPPSIGNLTLLKELYLASNQMNG 405
SIP + +L L+EL +ASNQ+
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLKS 487
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDL N L+ F S LQ LDLS + L +L T+IL+ N I S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 91
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN---SFLGSIPP 385
GLS L+KL + +G LK L+ L + N SF +P
Sbjct: 92 ALGAFSGLSS------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPE 143
Query: 386 SIGNLTLLKELYLASNQMNGQKISD 410
NLT L+ L L+SN++ +D
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD 168
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDL N L+ F S LQ LDLS + L +L T+IL+ N I S
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 93
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN---SFLGSIPP 385
GLS + LE F +G LK L+ L + N SF +P
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENF------PIGHLKTLKELNVAHNLIQSF--KLPE 145
Query: 386 SIGNLTLLKELYLASNQMNGQKISD 410
NLT L+ L L+SN++ +D
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDL N L+ F S LQ LDLS + L +L T+IL+ N I S
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 92
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN---SFLGSIPP 385
GLS L+KL + +G LK L+ L + N SF +P
Sbjct: 93 ALGAFSGLSS------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPE 144
Query: 386 SIGNLTLLKELYLASNQMNGQKISD 410
NLT L+ L L+SN++ +D
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDL N L+ F S LQ LDLS + L +L T+IL+ N I S
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 93
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN---SFLGSIPP 385
GLS L+KL + +G LK L+ L + N SF +P
Sbjct: 94 ALGAFSGLSS------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPE 145
Query: 386 SIGNLTLLKELYLASNQMNGQKISD 410
NLT L+ L L+SN++ +D
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
LDL N L+ F S LQ LDLS + L +L T+IL+ N I S
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 92
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN---SFLGSIPP 385
GLS L+KL + +G LK L+ L + N SF +P
Sbjct: 93 ALGAFSGLSS------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPE 144
Query: 386 SIGNLTLLKELYLASNQMNGQKISD 410
NLT L+ L L+SN++ +D
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
L LG N L DI L +L L L+GN L + KL NL+ ++L N + S
Sbjct: 68 LALGGNKLH-DI-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI- 387
D L+ T L L NQ + L NL L L N+ L S+P +
Sbjct: 125 PDGVFDKLTNLT------YLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVF 177
Query: 388 GNLTLLKELYLASNQM 403
LT LK+L L NQ+
Sbjct: 178 DKLTQLKQLSLNDNQL 193
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L KLEL+ NQ TGI P + +++ L L +N L LK L L NQ++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 405 GQKISDSYQHLKNQTEL 421
+ S++HL + T L
Sbjct: 116 CV-MPGSFEHLNSLTSL 131
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 243 QVLDLSNN--DFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
+ LDLS N F F TSL LDL N + + F L L+ LD ++
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408
Query: 301 LGGQLSRNLGKLCNLRTMI---LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT- 356
Q+S +LR +I +S + + +GLS LE L++ N F
Sbjct: 409 --KQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMAGNSFQE 459
Query: 357 GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
LP L+NL L L Q P + +L+ L+ L +ASNQ+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 36/169 (21%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
LDLS N + F+ L LDL ++Q I DG
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG--------------------- 70
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
L +L T+IL+ N I S GLS L+KL + +G
Sbjct: 71 ---AYQSLSHLSTLILTGNPIQSLALGAFSGLSS------LQKLVAVETNLASLENFPIG 121
Query: 365 SLKNLRHLVLWQN---SFLGSIPPSIGNLTLLKELYLASNQMNGQKISD 410
LK L+ L + N SF +P NLT L+ L L+SN++ +D
Sbjct: 122 HLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 36/270 (13%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L++L+L + LP L L L+ LVL N F S N L L + N
Sbjct: 280 LQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ + ++L+N EL L + SD + LS L L+++YNE P SL
Sbjct: 339 LELGTGCLENLENLRELD-LSHDDIETSDCCNLQLRNLS-HLQSLNLSYNE-----PLSL 391
Query: 465 ---GFNFPAK---VDLSFNN---------FEGRLLLWSFNVTKLYLRDNS---FSGLIP- 505
F + +DL+F F+ LL N++ L +S F GL
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 506 ---NDIGQNLP-----FLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNS 557
N G + P L L +L LV+S +LS F+++ + +D+S+N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 558 LSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
L+ S+ E++ L+ + +L L +N++S LP
Sbjct: 512 LTSSSIEALSHLKGI-YLNLASNHISIILP 540
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327
C +LG N++ G +P NS + L+ S N Q + +L NL + L+R I
Sbjct: 19 CENLGLNEIPGTLP------NSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYW 71
Query: 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN--SFLGSIPP 385
D L+ L L N + +L K L+HL Q S + IP
Sbjct: 72 IHEDTFQSQHR------LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP- 124
Query: 386 SIGNLTLLKELYLASNQMNGQKISDSY 412
+ N L+ LYL SN ++ K+ +
Sbjct: 125 -LHNQKTLESLYLGSNHISSIKLPKGF 150
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 145/361 (40%), Gaps = 65/361 (18%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA---SLNSLQELDLSGNSFL 301
LDLS+N +P I L L L + L + + S S+Q L L+ N L
Sbjct: 176 LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLL 235
Query: 302 GGQLSRNLG-KLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360
S G K NL + LS NN+ + L L L L +N + P
Sbjct: 236 ATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPS------LRYLSLEYNNIQRLSP 289
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIP----PSIGNLTL--LKEL-YL----------ASNQM 403
S L NLR+L L + S+ P+I + + LK L YL SN
Sbjct: 290 RSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTF 349
Query: 404 NG---------QKISDSYQHLKNQT-------ELRTLVLNK---ARISDTISDWFWQLSL 444
G K S Q L N+T L TL L K ++I++ W QL +
Sbjct: 350 TGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRI 409
Query: 445 TLDELDVAYNELRGRVPNS--LGFNFPAKVDLSFNNFEGRLLLWSF----NVTKLYLRDN 498
LD+ NE+ ++ G ++ LS+N + +L SF ++ +L LR
Sbjct: 410 ----LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY-LQLSTSSFALVPSLQRLMLRRV 464
Query: 499 SFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
+ + DI + PF L+ L L +SNNN++ L + L ILD +N+L
Sbjct: 465 ALKNV---DISPS-PFRP----LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Query: 559 S 559
+
Sbjct: 517 A 517
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTP 563
IP+D+ N+ L +++N L P F+ S L ILD NS+S P
Sbjct: 19 IPDDLPSNITVLN------------LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 564 ESIGSLRTVKFLVLRNNYLS 583
E L +K L L++N LS
Sbjct: 67 ELCQILPLLKVLNLQHNELS 86
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 243 QVLDLSNNDFNST-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
+VL ++ N F P + +L LDL L+ P F SL+SLQ L++S N+F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 302 G 302
Sbjct: 508 S 508
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 243 QVLDLSNNDFNST-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
+VL ++ N F P + +L LDL L+ P F SL+SLQ L++S N+F
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 302 G 302
Sbjct: 532 S 532
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFL 301
Q+L L +N P ++ +L L LGSN L G +P G F SL L LDL G + L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL-GTNQL 100
Query: 302 GGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI 361
S +L +L+ + + N ++++ G+ T+ L L L NQ I
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCN----KLTELPRGIERLTH---LTHLALDQNQLKSIPHG 153
Query: 362 SLGSLKNLRHLVLWQNSF 379
+ L +L H L+ N +
Sbjct: 154 AFDRLSSLTHAYLFGNPW 171
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 281 PDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340
P F SL +L+EL L N LG L L + L N ++ S D L
Sbjct: 57 PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL---- 111
Query: 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKELYLA 399
+ L++L + N+ T LP + L +L HL L QN L SIP + L+ L YL
Sbjct: 112 --VHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLF 167
Query: 400 SN 401
N
Sbjct: 168 GN 169
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 243 QVLDLSNNDFNST-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
+VL ++ N F P + +L LDL L+ P F SL+SLQ L++S N+F
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 302 G 302
Sbjct: 213 S 213
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
++P S +L LDLS N+ + +L NL +++LS N+++ S+ +
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398
L L+L N + L+ L L+L+ N + + ++ L++LYL
Sbjct: 90 ------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 399 ASNQM 403
+ NQ+
Sbjct: 144 SQNQI 148
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGG 303
L L+NN+F +F L SN+ DI +G F + + E+ L+ N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 304 QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363
Q + L +L+T++L N I+ +D GLS S+ L L L NQ T + P +
Sbjct: 97 Q-HKMFKGLESLKTLMLRSNRITCVGNDSFIGLS----SVRL--LSLYDNQITTVAPGAF 149
Query: 364 GSLKNLRHLVLWQNSF 379
+L +L L L N F
Sbjct: 150 DTLHSLSTLNLLANPF 165
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 243 QVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
Q LD ++ T F ++ LL LD+ + + D F L SL L ++GNSF
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 302 GGQLSRNLGKLCNLRTMILSR 322
LS NL + LS+
Sbjct: 462 DNTLSNVFANTTNLTFLDLSK 482
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 243 QVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
Q LD ++ T F ++ LL LD+ + + D F L SL L ++GNSF
Sbjct: 397 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 456
Query: 302 GGQLSRNLGKLCNLRTMILSR 322
LS NL + LS+
Sbjct: 457 DNTLSNVFANTTNLTFLDLSK 477
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNIS 326
LDL N LQ +P +L +L LD+S N L R LG+L + + L N +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---QELYLKGNELK 137
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
+ L T + LEKL L NQ T + L L+NL L+L +NS L +IP
Sbjct: 138 TLPPGLL------TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNIS 326
LDL N LQ +P +L +L LD+S N L R LG+L + + L N +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---QELYLKGNELK 137
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
+ L T + LEKL L NQ T + L L+NL L+L +NS L +IP
Sbjct: 138 TLPPGLL------TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNIS 326
LDL N LQ +P +L +L LD+S N L R LG+L + + L N +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---QELYLKGNELK 137
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
+ L T + LEKL L NQ T + L L+NL L+L +NS L +IP
Sbjct: 138 TLPPGLL------TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIP 188
>pdb|4F78|A Chain A, Crystal Structure Of Vancomycin Resistance Bifunctional
D,D- DipeptidaseD,D-Carboxypeptidase Vanxyg From
Enterococcus Faecalis
Length = 255
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIG-QNLPFLTDLGNLKQLITLVISNNN 533
G LLL + N LRDN+ GL+P DI N+ D+ N+ QLI IS N
Sbjct: 16 GNLLLVNKNYP---LRDNNVKGLVPADIRFPNILXKRDVANVLQLIFEKISAGN 66
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 279 DIPDGFASLNSLQELDLS----GNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
D+ D AS SLQELDLS GN+ + L C LRT+ L +I++E
Sbjct: 214 DLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAE 267
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNIS 326
LDL N LQ +P +L +L LD+S N L R LG+L + + L N +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---QELYLKGNELK 137
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
+ L T + LEKL L NQ T + L L+NL L+L +NS L +IP
Sbjct: 138 TLPPGLL------TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIP 188
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISS 327
LDL + L G +P G +NSL++L L+ NSF QL + N +LR + + N
Sbjct: 282 LDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF--DQLCQINAASFPSLRDLYIKGNMRK- 337
Query: 328 EVSDFLDGLSECTNSIL-LEKLELRFNQFTGILPISLGSLKNLRHL 372
LD + C + L+KL+L + +L LKNLRHL
Sbjct: 338 -----LDLGTRCLEKLENLQKLDLSHSDIEASDCCNL-QLKNLRHL 377
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN 308
+ NST P ++ +LGS D+ +GF L +LQEL FL + N
Sbjct: 313 HRKINSTNPCGEIGLSDYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVN 372
Query: 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFN 353
+ + + + + + F D LL KLE+ +N
Sbjct: 373 VFPIDKITKAVKESRRLGLGIMGFAD---------LLYKLEIPYN 408
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 65/305 (21%)
Query: 325 ISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS--------------------LG 364
++ E + G+ TN LE L L NQ T I P+S L
Sbjct: 51 VAGEKVASIQGIEYLTN---LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQ 107
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
+L NLR L L +++ + I P + NLT L L +N +SD L N T L L
Sbjct: 108 NLTNLRELYLNEDN-ISDISP-LANLTKXYSLNLGANH----NLSD-LSPLSNXTGLNYL 160
Query: 425 VLNKARISDT--ISDWFWQLSLTLDELDVAYNELRGRVP----NSLGFNFPAKV----DL 474
+ ++++ D I++ SL+L+ YN++ P SL + F A V D+
Sbjct: 161 TVTESKVKDVTPIANLTDLYSLSLN-----YNQIEDISPLASLTSLHY-FTAYVNQITDI 214
Query: 475 SFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN---------DIGQN-LPFLTDLGNLKQL 524
+ RL L + +N + L P +IG N + + + +L +L
Sbjct: 215 TPVANXTRL-------NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKL 267
Query: 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L + +N +S +I +L +N+S L L ++NN L E IG L + L L N+++
Sbjct: 268 KXLNVGSNQIS-DISVL-NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325
Query: 585 KLPLS 589
PL+
Sbjct: 326 IRPLA 330
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN 308
+ NST P ++ +LGS D+ +GF L +LQEL FL + N
Sbjct: 313 HRKINSTNPCGEIGLSDYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVN 372
Query: 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFN 353
+ + + + + + F D LL KLE+ +N
Sbjct: 373 VFPIDKITKAVKESRRLGLGIMGFAD---------LLYKLEIPYN 408
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLG 302
L L+NN S ++T L L LG N L+ +P G F L L+EL L+ N L
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ-LQ 144
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF 355
+ KL NL+T+ LS N + S D L + L+ + L NQF
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK------LQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLG 302
L L+NN S ++T L L LG N L+ +P G F L L+EL L+ N L
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ-LQ 144
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF 355
+ KL NL+T+ LS N + S D L + L+ + L NQF
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK------LQTITLFGNQF 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,009,842
Number of Sequences: 62578
Number of extensions: 615859
Number of successful extensions: 1730
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 343
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)