Query 037325
Match_columns 598
No_of_seqs 445 out of 4661
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7E-63 1.5E-67 564.1 43.1 519 33-595 27-572 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-54 5.6E-59 493.6 38.4 507 52-589 55-590 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.9E-40 6.2E-45 308.5 -13.1 454 75-583 45-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 5.7E-35 1.2E-39 285.0 9.3 370 113-554 78-447 (873)
5 KOG4194 Membrane glycoprotein 100.0 2.7E-35 5.9E-40 287.3 6.8 369 76-475 79-447 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1.2E-37 2.5E-42 291.1 -11.2 422 77-559 70-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2E-34 4.4E-39 295.8 -6.2 421 107-583 39-465 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 1.8E-33 3.9E-38 276.5 -2.3 367 111-558 5-374 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 2.2E-32 4.8E-37 268.9 -3.1 387 76-555 8-395 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.5E-31 3.3E-36 274.8 -3.5 421 76-581 46-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.5E-27 232.0 30.0 347 181-557 551-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 2.2E-25 4.7E-30 209.0 -0.9 412 115-580 69-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.5E-26 225.0 27.8 338 208-581 551-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.3E-22 2.8E-27 216.0 16.6 264 241-566 202-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.4E-26 209.1 17.9 266 215-543 201-466 (788)
16 KOG4237 Extracellular matrix p 99.8 1.1E-22 2.5E-27 190.8 -2.8 401 138-597 67-491 (498)
17 cd00116 LRR_RI Leucine-rich re 99.8 5.3E-20 1.2E-24 184.0 7.0 289 245-582 3-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 187.6 13.6 246 264-559 178-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.8 8.5E-19 1.8E-23 188.4 12.6 295 240-587 178-474 (754)
20 cd00116 LRR_RI Leucine-rich re 99.8 4E-19 8.7E-24 177.7 4.5 235 192-456 2-262 (319)
21 KOG0617 Ras suppressor protein 99.6 1E-17 2.2E-22 139.9 -5.5 181 344-588 34-217 (264)
22 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 133.6 -5.1 184 236-433 29-213 (264)
23 PLN03150 hypothetical protein; 99.5 7.8E-14 1.7E-18 149.8 14.1 129 31-176 368-504 (623)
24 KOG1909 Ran GTPase-activating 99.2 1.8E-12 3.8E-17 121.3 1.2 74 365-438 155-232 (382)
25 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.5E-17 122.6 2.0 218 135-380 118-339 (505)
26 PLN03150 hypothetical protein; 99.2 1.9E-11 4E-16 131.6 7.6 109 469-587 420-532 (623)
27 KOG1909 Ran GTPase-activating 99.2 3.4E-12 7.5E-17 119.3 0.8 140 286-431 155-310 (382)
28 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 118.7 1.6 210 214-432 120-339 (505)
29 KOG0532 Leucine-rich repeat (L 99.0 7.8E-12 1.7E-16 123.9 -4.1 187 371-581 79-271 (722)
30 COG4886 Leucine-rich repeat (L 99.0 4E-10 8.8E-15 116.0 7.7 61 344-406 117-178 (394)
31 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.7E-16 121.6 -2.8 191 191-402 78-271 (722)
32 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 99.0 6.2 127 110-271 16-147 (175)
33 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 99.0 6.0 128 76-224 20-149 (175)
34 KOG2120 SCF ubiquitin ligase, 99.0 1.4E-11 3.1E-16 112.6 -5.2 182 114-325 186-375 (419)
35 COG4886 Leucine-rich repeat (L 99.0 1.4E-09 3.1E-14 111.9 8.9 197 117-330 97-294 (394)
36 KOG4658 Apoptotic ATPase [Sign 98.9 5.7E-10 1.2E-14 122.7 4.6 251 107-374 565-826 (889)
37 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 78.5 3.0 61 522-582 1-61 (61)
38 KOG1259 Nischarin, modulator o 98.9 2.7E-10 5.8E-15 104.4 -1.0 140 102-253 273-412 (490)
39 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.3E-14 100.5 0.8 212 102-329 203-415 (490)
40 KOG4658 Apoptotic ATPase [Sign 98.7 9.6E-09 2.1E-13 113.2 5.0 222 95-327 577-808 (889)
41 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 73.9 3.5 61 488-558 1-61 (61)
42 PF08263 LRRNT_2: Leucine rich 98.7 2.5E-08 5.5E-13 65.7 4.7 38 34-71 2-43 (43)
43 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 111.6 -1.9 129 111-252 70-198 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 6.7E-10 1.5E-14 101.8 -6.3 166 107-299 204-374 (419)
45 KOG0531 Protein phosphatase 1, 98.6 6.5E-09 1.4E-13 107.2 -0.5 86 490-588 234-323 (414)
46 KOG4341 F-box protein containi 98.6 2E-09 4.3E-14 103.3 -4.4 284 114-402 139-437 (483)
47 COG5238 RNA1 Ran GTPase-activa 98.4 7.1E-08 1.5E-12 87.6 1.7 229 109-356 26-285 (388)
48 KOG4341 F-box protein containi 98.4 2.9E-08 6.2E-13 95.6 -1.8 301 138-450 138-458 (483)
49 KOG2982 Uncharacterized conser 98.4 1E-07 2.2E-12 87.8 1.6 42 162-203 71-112 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.7E-12 86.1 0.4 193 237-432 89-316 (388)
51 KOG1859 Leucine-rich repeat pr 98.3 7.2E-09 1.6E-13 106.0 -8.8 179 106-300 102-291 (1096)
52 KOG2982 Uncharacterized conser 98.3 3.5E-07 7.6E-12 84.3 2.3 115 109-227 41-158 (418)
53 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 77.4 -2.3 93 488-593 77-169 (177)
54 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6.2E-13 101.8 -7.8 129 113-253 164-292 (1096)
55 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.7E-11 56.5 3.4 36 523-559 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.5E-06 5.4E-11 56.2 3.6 37 546-583 1-37 (44)
57 KOG3665 ZYG-1-like serine/thre 98.0 2.8E-06 6.2E-11 91.5 1.8 157 288-452 122-283 (699)
58 KOG4579 Leucine-rich repeat (L 97.9 1.4E-06 3E-11 71.1 -0.9 88 489-589 54-141 (177)
59 PRK15386 type III secretion pr 97.8 8.8E-05 1.9E-09 73.8 8.9 75 363-455 48-123 (426)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3.1E-10 86.2 3.3 128 137-270 147-281 (699)
61 KOG1644 U2-associated snRNP A' 97.8 5.3E-05 1.1E-09 66.4 6.1 87 184-273 60-149 (233)
62 PRK15386 type III secretion pr 97.7 0.00018 4E-09 71.6 9.5 75 310-402 49-123 (426)
63 KOG2739 Leucine-rich acidic nu 97.6 3E-05 6.5E-10 71.0 2.0 118 105-226 35-154 (260)
64 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.7E-09 63.3 4.8 87 113-203 42-128 (233)
65 KOG1947 Leucine rich repeat pr 97.1 8.8E-05 1.9E-09 78.7 -0.6 14 262-275 293-306 (482)
66 KOG4308 LRR-containing protein 96.8 8.9E-06 1.9E-10 84.0 -11.2 233 344-583 205-473 (478)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0039 8.6E-08 52.6 6.8 83 210-297 30-112 (129)
68 KOG2739 Leucine-rich acidic nu 96.7 0.00089 1.9E-08 61.5 2.5 36 135-172 40-75 (260)
69 PF13306 LRR_5: Leucine rich r 96.6 0.0058 1.2E-07 51.6 6.6 76 210-290 53-128 (129)
70 KOG1947 Leucine rich repeat pr 96.6 0.00087 1.9E-08 71.1 1.9 117 110-228 185-308 (482)
71 KOG2123 Uncharacterized conser 96.5 0.00014 3E-09 66.9 -4.2 79 189-275 20-99 (388)
72 PF00560 LRR_1: Leucine Rich R 96.3 0.0012 2.6E-08 36.1 0.4 19 548-567 2-20 (22)
73 KOG4308 LRR-containing protein 96.3 2.2E-05 4.8E-10 81.1 -12.1 308 266-583 89-445 (478)
74 KOG2123 Uncharacterized conser 96.3 0.00015 3.3E-09 66.7 -5.3 82 184-270 37-123 (388)
75 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.6E-08 35.0 0.8 20 572-592 2-21 (22)
76 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.8E-07 27.9 1.3 11 548-558 3-13 (17)
77 KOG3864 Uncharacterized conser 93.1 0.019 4.1E-07 50.8 -0.9 82 344-429 102-186 (221)
78 PF13504 LRR_7: Leucine rich r 93.1 0.057 1.2E-06 27.2 1.2 17 570-587 1-17 (17)
79 KOG3864 Uncharacterized conser 92.4 0.021 4.5E-07 50.6 -1.6 67 208-274 118-186 (221)
80 KOG0473 Leucine-rich repeat pr 92.1 0.0036 7.7E-08 56.4 -6.7 87 488-587 42-128 (326)
81 KOG4242 Predicted myosin-I-bin 91.2 1.2 2.7E-05 44.9 8.9 114 137-252 164-280 (553)
82 PF13516 LRR_6: Leucine Rich r 90.2 0.065 1.4E-06 29.8 -0.5 13 547-559 3-15 (24)
83 smart00369 LRR_TYP Leucine-ric 90.0 0.29 6.3E-06 27.7 2.1 14 546-559 2-15 (26)
84 smart00370 LRR Leucine-rich re 90.0 0.29 6.3E-06 27.7 2.1 14 546-559 2-15 (26)
85 KOG0473 Leucine-rich repeat pr 89.6 0.0087 1.9E-07 54.0 -6.6 83 74-174 41-123 (326)
86 smart00369 LRR_TYP Leucine-ric 88.7 0.35 7.7E-06 27.4 1.8 20 569-589 1-20 (26)
87 smart00370 LRR Leucine-rich re 88.7 0.35 7.7E-06 27.4 1.8 20 569-589 1-20 (26)
88 smart00364 LRR_BAC Leucine-ric 80.7 1.1 2.4E-05 25.3 1.3 16 547-563 3-18 (26)
89 PF07172 GRP: Glycine rich pro 79.9 1.8 3.9E-05 33.8 2.8 24 1-25 1-24 (95)
90 KOG4242 Predicted myosin-I-bin 78.3 13 0.00027 38.0 8.6 66 240-308 165-233 (553)
91 smart00365 LRR_SD22 Leucine-ri 73.8 3 6.5E-05 23.7 1.8 14 546-559 2-15 (26)
92 smart00368 LRR_RI Leucine rich 64.9 5.2 0.00011 23.1 1.7 14 420-433 3-16 (28)
93 KOG3763 mRNA export factor TAP 58.4 6.5 0.00014 40.9 2.1 40 388-429 215-254 (585)
94 KOG3763 mRNA export factor TAP 50.5 12 0.00025 39.1 2.4 12 190-201 272-283 (585)
95 smart00367 LRR_CC Leucine-rich 42.8 17 0.00036 20.4 1.3 10 392-401 3-12 (26)
96 PF02950 Conotoxin: Conotoxin; 30.2 23 0.00049 26.2 0.7 11 55-65 57-67 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7e-63 Score=564.08 Aligned_cols=519 Identities=33% Similarity=0.474 Sum_probs=286.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccC
Q 037325 33 QEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQ 111 (598)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 111 (598)
.++|++||++||+++.+|.+.+.+| .+.+||.|.||+|++ .++|+.|||++ +++.|.++..+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~--------------~~i~~~~~~~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG--------------KNISGKISSAIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC--------------CCccccCChHHhC
Confidence 5689999999999998887788999 567999999999985 57999999998 4555555555555
Q ss_pred CCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCCCcc----------------------cchhccCCCCCCEEE
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFFSGT----------------------IPQTLGNLSNLLYLD 168 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~----------------------~p~~l~~l~~L~~L~ 168 (598)
+++|++|+|++|++.+. +|..+ ..+++|++|++++|++++. +|..++++++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 66666666666655543 44433 2555555555555555544 444444444444444
Q ss_pred ccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEcc
Q 037325 169 LNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248 (598)
Q Consensus 169 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~ 248 (598)
+++|.+.... ...+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 171 L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 171 LGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQI---PRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLV 244 (968)
T ss_pred CccCcccccC--ChhhhhCcCCCeeeccCCCCcCcC---ChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECc
Confidence 4444332111 112344444555555444444332 3444445555555555554444333 333444555555555
Q ss_pred CCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcc
Q 037325 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 249 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
+|.+++..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|. +.+.+|..+..+++|+.|++++|.+.+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCc
Confidence 555554555555555555555555555554455445555555555555554 3444455555555555555555555555
Q ss_pred cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccC
Q 037325 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408 (598)
Q Consensus 329 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 408 (598)
.|..+..++ +|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..
T Consensus 324 ~~~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~- 396 (968)
T PLN00113 324 IPVALTSLP------RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI- 396 (968)
T ss_pred CChhHhcCC------CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC-
Confidence 554444444 5555555555555555555555555555666555555555555555555555555555554443
Q ss_pred CCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC-
Q 037325 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW- 486 (598)
Q Consensus 409 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~- 486 (598)
| ..+..+++|+.|++++|++++..|..+.. ++.|+.+++++|.+++.+|..+... .|+.+++++|++.+.+|..
T Consensus 397 p---~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 397 P---KSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred C---HHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 2 23455666666666666666666655544 5566666666666666555544333 5555666666555555543
Q ss_pred -CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchh
Q 037325 487 -SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565 (598)
Q Consensus 487 -~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 565 (598)
.++|+.||+++|++++.+|..+.. +++|+.|+|++|.+++.+|..++++++|++|+|++|+++|.+|..
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGS----------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ccccceEEECcCCccCCccChhhhh----------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 245556666666665555555444 444444444444444444444444444444444444444444444
Q ss_pred ccCCCCCCEEEccCCCCcccCCcCccCcCC
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPLSLKNCTF 595 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~ 595 (598)
+.++++|++|++++|+++|.+|..+.++++
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-54 Score=493.58 Aligned_cols=507 Identities=31% Similarity=0.444 Sum_probs=447.1
Q ss_pred CCCCCCCCCCCCCcccEEe---cC------------CCCcEEEEEcCCCCCCC-C----------CCcccCCCCCcceec
Q 037325 52 GQLSSWVGEDCCSWSGVSC---NN------------RTASVIKLNLNNPFRDS-F----------GSFEDDAGHELGGEI 105 (598)
Q Consensus 52 ~~~~~W~~~~~c~w~gv~c---~~------------~~~~v~~L~L~~~~~~~-~----------~~~~~~~~~~l~~~~ 105 (598)
..++.|.|..|-.-..|+- .+ .-.+++.|+|+++...+ . .+..++..+++++.+
T Consensus 55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 134 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134 (968)
T ss_pred CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc
Confidence 3578998877642122221 10 12367888998754321 1 223445567777776
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhc
Q 037325 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLS 185 (598)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 185 (598)
|. ..+++|++|+|++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+... ....+.
T Consensus 135 p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~ 209 (968)
T PLN00113 135 PR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELG 209 (968)
T ss_pred Cc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc--CChHHc
Confidence 64 4578888889988888875 899999999999999999999999999999999999999999876433 234588
Q ss_pred CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCC
Q 037325 186 GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265 (598)
Q Consensus 186 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 265 (598)
++++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+.++++|++|++++|++.+..|..+.++++
T Consensus 210 ~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEI---PYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred CcCCccEEECcCCccCCcC---ChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 9999999999999998765 6789999999999999999987766 56788999999999999999999999999999
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
|+.|++++|.+.+.+|..+..+++|+.|++++|. +.+..|..+..+++|+.|++++|.+.+..|..+..+. +|
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~------~L 358 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN------NL 358 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC------CC
Confidence 9999999999999999999999999999999999 6778899999999999999999999999998888877 89
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.. |. .+..++.|+.|+
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-p~---~~~~l~~L~~L~ 434 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-PS---EFTKLPLVYFLD 434 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC-Ch---hHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876 53 467889999999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSG 502 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~ 502 (598)
+++|++++.++..++. +++|++|++++|++.+.+|..+....++.|++++|++.+.+|.. +++|+.|++++|++++
T Consensus 435 Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhcc-CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 9999999998887776 78999999999999999998887779999999999999988875 5789999999999999
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCC
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (598)
.+|..+.. +++|++|+|++|.++|.+|..++++++|+.|++++|+++|.+|..+.++++|+++++++|++
T Consensus 514 ~~p~~~~~----------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 514 EIPDELSS----------CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred eCChHHcC----------ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99998887 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcC
Q 037325 583 SGKLPLS 589 (598)
Q Consensus 583 ~g~~P~~ 589 (598)
+|.+|..
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 9999964
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=308.49 Aligned_cols=454 Identities=26% Similarity=0.319 Sum_probs=294.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
.....+++++ |.+. .+.+.+.++..|.+|++.+|++. ++|.+++.+..++.|++++|+++ .+
T Consensus 45 v~l~~lils~--------------N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~l 106 (565)
T KOG0472|consen 45 VDLQKLILSH--------------NDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-EL 106 (565)
T ss_pred cchhhhhhcc--------------Cchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hc
Confidence 3567777776 4544 34456788999999999999998 78999999999999999999998 88
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
|..++.+.+|+++++++|.+..... .++.+-.++.++..+|++... ++.+..+.+|..+++.+|.++..++.
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~---~i~~~~~l~dl~~~~N~i~sl----p~~~~~~~~l~~l~~~~n~l~~l~~~- 178 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPD---SIGRLLDLEDLDATNNQISSL----PEDMVNLSKLSKLDLEGNKLKALPEN- 178 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCc---hHHHHhhhhhhhccccccccC----chHHHHHHHHHHhhccccchhhCCHH-
Confidence 9999999999999998876643333 266677788888888888777 57777888888888888888887763
Q ss_pred CcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccch-hhcCCC
Q 037325 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR-NLGKLC 313 (598)
Q Consensus 235 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~ 313 (598)
.+ +++.|+.||...|.+. .+|+.++.+.+|..|++..|++. .+| .|..+..|++|++..|.+ ..+|. ...+++
T Consensus 179 ~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i--~~lpae~~~~L~ 252 (565)
T KOG0472|consen 179 HI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI--EMLPAEHLKHLN 252 (565)
T ss_pred HH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH--HhhHHHHhcccc
Confidence 22 3778888888877765 57777888888888888888887 556 677888888888888873 34444 444788
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCC--
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT-- 391 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~-- 391 (598)
++..|++++|++.. .|+.+..+. +|++||+++|.+++ +|..++++ .|+.|.+.+|.+...--+.+..-+
T Consensus 253 ~l~vLDLRdNklke-~Pde~clLr------sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE-VPDEICLLR------SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred cceeeecccccccc-CchHHHHhh------hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 88888888888774 344444454 68888888888874 66678888 788888888876521111111000
Q ss_pred CCCEEe-------CcCC---cC-CcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC--CCCEEEccCCcCcc
Q 037325 392 LLKELY-------LASN---QM-NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL--TLDELDVAYNELRG 458 (598)
Q Consensus 392 ~L~~L~-------l~~n---~l-~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~ls~n~~~~ 458 (598)
-|++|. ++.. .. ++...+..+.......+.+.|++++-+++.. |..+|.... -.+.++++.|++.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~Vt~VnfskNqL~- 401 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIVTSVNFSKNQLC- 401 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcceEEEecccchHh-
Confidence 011110 1110 00 0111122233344455677777777777643 443433221 2566777777775
Q ss_pred cCCCCcccC--CCCEEEcccCcCc--ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 459 RVPNSLGFN--FPAKVDLSFNNFE--GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 459 ~~p~~~~~~--~L~~l~ls~n~l~--~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
.+|+.+... .++.+++++|.+. +.+-..+++|..|++++|-+. .+|.+++. +..|+.||+|.|.|
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------LVRLQTLNLSFNRF 470 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh----------hhhhheeccccccc
Confidence 455544332 3333444444432 122223455555555555554 45555554 44555555555555
Q ss_pred c-----------------------cccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 535 S-----------------------GEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 535 ~-----------------------~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
. ..-|..+.+|.+|..||+.+|.+. .+|..++++++|++|++.||++.
T Consensus 471 r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4 223333666677777777777776 66777777777777777777776
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-35 Score=285.05 Aligned_cols=370 Identities=25% Similarity=0.249 Sum_probs=251.6
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+.-+.||+++|.++.+ -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.+
T Consensus 78 ~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I------------------ 137 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLI------------------ 137 (873)
T ss_pred cceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccc------------------
Confidence 3556799999999877 6778899999999999999998 8888666666677777776544
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
+.+. .+.+..++.|+.|+++.|.++.++. ..+..-.++++|+|++|+++..-...|..+.+|..|.++
T Consensus 138 --------~sv~---se~L~~l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 138 --------SSVT---SEELSALPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred --------cccc---HHHHHhHhhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 3322 3455566666666666666666655 444455677777777777776666667777777777777
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|+++...+..|.++++|+.|+|..|.+ ...---.|.++++|+.|.+.+|++.......|..+. ++++|+|..
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~------kme~l~L~~ 278 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE------KMEHLNLET 278 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeec------ccceeeccc
Confidence 7777744445566677777777777763 222234566777777777777777766666666666 678888888
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
|+++..-..++.++++|+.|++++|.+...-++.+...++|++|++++|+++... +. .+..+..|++|.+++|+++
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~-~~---sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD-EG---SFRVLSQLEELNLSHNSID 354 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC-hh---HHHHHHHhhhhcccccchH
Confidence 8777666667777788888888888777666777777788888888888777554 32 3455566777777777776
Q ss_pred cccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhccc
Q 037325 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNL 512 (598)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 512 (598)
..-...| ..+.+|++|||+.|.+...+.+.-. .+..+++|+.|++.+|++. .||..-
T Consensus 355 ~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~-----------------~f~gl~~LrkL~l~gNqlk-~I~krA---- 411 (873)
T KOG4194|consen 355 HLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAV-----------------AFNGLPSLRKLRLTGNQLK-SIPKRA---- 411 (873)
T ss_pred HHHhhHH-HHhhhhhhhcCcCCeEEEEEecchh-----------------hhccchhhhheeecCceee-ecchhh----
Confidence 4433333 3366777777777777655443211 1112556777777777776 454321
Q ss_pred CCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
+..+.+|+.|||.+|.|...-|..|..+ .|+.|.+.
T Consensus 412 -----fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 412 -----FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -----hccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 2237777788888887776667777777 77776554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=287.29 Aligned_cols=369 Identities=23% Similarity=0.234 Sum_probs=321.6
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP 155 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 155 (598)
.+..||+++ |.+...-+..|.++++|+.+++.+|.++ .+|.+.+...+|+.|+|.+|.|+..-.
T Consensus 79 ~t~~Ldlsn--------------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 79 QTQTLDLSN--------------NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred ceeeeeccc--------------cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccH
Confidence 456677777 7888888888999999999999999999 689988888899999999999997777
Q ss_pred hhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCC
Q 037325 156 QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFP 235 (598)
Q Consensus 156 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 235 (598)
..+..++.|++|||+.|.+.... ...|..-.++++|+|++|.++... ...|..+.+|..|.++.|.++.+|+ ..
T Consensus 143 e~L~~l~alrslDLSrN~is~i~--~~sfp~~~ni~~L~La~N~It~l~---~~~F~~lnsL~tlkLsrNrittLp~-r~ 216 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIP--KPSFPAKVNIKKLNLASNRITTLE---TGHFDSLNSLLTLKLSRNRITTLPQ-RS 216 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhccc--CCCCCCCCCceEEeeccccccccc---cccccccchheeeecccCcccccCH-HH
Confidence 78999999999999998764332 244777789999999999999887 5788999999999999999999998 88
Q ss_pred cCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 236 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
|.++++|+.|+|..|++...--..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|+ +...-..++.+++.|
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSL 295 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchh
Confidence 8899999999999999876555668899999999999999986666678899999999999999 666667788899999
Q ss_pred CEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCE
Q 037325 316 RTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKE 395 (598)
Q Consensus 316 ~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 395 (598)
+.|+++.|.+...-++.+.-.+ +|++|+|++|.++..-+..+..+..|++|.+++|.+...-...|..+.+|++
T Consensus 296 ~~L~lS~NaI~rih~d~Wsftq------kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQ------KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhccchhhhheeecchhhhcc------cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 9999999999988888887777 8999999999999888889999999999999999998666667889999999
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcc
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLS 475 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls 475 (598)
||+++|.+...+ .+....+..+++|+.|++.+|++....-..|.. ++.|++|||.+|.+-..-|..|....|+.|.+.
T Consensus 370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg-l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG-LEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhcc-CcccceecCCCCcceeecccccccchhhhhhhc
Confidence 999999998877 556677888999999999999998665555554 899999999999998888888776666666544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=291.10 Aligned_cols=422 Identities=27% Similarity=0.350 Sum_probs=329.3
Q ss_pred EEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccch
Q 037325 77 VIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQ 156 (598)
Q Consensus 77 v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 156 (598)
.+.+++.. +.++ ++|++++.+..++.|+.++|++. ++|..+..+.+|+.|+.++|.+. .+|+
T Consensus 70 l~vl~~~~--------------n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~ 131 (565)
T KOG0472|consen 70 LTVLNVHD--------------NKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPD 131 (565)
T ss_pred eeEEEecc--------------chhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCc
Confidence 56777766 4544 67889999999999999999999 79999999999999999999999 8899
Q ss_pred hccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCc
Q 037325 157 TLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPS 236 (598)
Q Consensus 157 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 236 (598)
.++.+..|+.++..+|++...+.. +.++.++..+++.+|.+.... ++.+ +++.|++++...|-++.+|+ ..
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~---~~~~~~l~~l~~~~n~l~~l~---~~~i-~m~~L~~ld~~~N~L~tlP~--~l 202 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPED---MVNLSKLSKLDLEGNKLKALP---ENHI-AMKRLKHLDCNSNLLETLPP--EL 202 (565)
T ss_pred hHHHHhhhhhhhccccccccCchH---HHHHHHHHHhhccccchhhCC---HHHH-HHHHHHhcccchhhhhcCCh--hh
Confidence 999999999999999887655543 677888999999999998885 3444 49999999999999999986 56
Q ss_pred CCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccc-cCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 237 LNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGF-ASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
+.+.+|+.|++..|++. ..| .|..+..|++++++.|++. .+|.+. .+++++..||+..|++ ...|..+.-+.+|
T Consensus 203 g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL 277 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSL 277 (565)
T ss_pred cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--ccCchHHHHhhhh
Confidence 68899999999999997 455 6888999999999999998 667655 4899999999999996 6788889899999
Q ss_pred CEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-------------------------------------
Q 037325 316 RTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI------------------------------------- 358 (598)
Q Consensus 316 ~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~------------------------------------- 358 (598)
..|++++|.+++..+ .++.+ .|+.|-+.+|.+...
T Consensus 278 ~rLDlSNN~is~Lp~-sLgnl-------hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPY-SLGNL-------HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred hhhcccCCccccCCc-ccccc-------eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 999999999987544 45555 388888999876411
Q ss_pred Ccc----ccCCCCCCCEEEccCCcCCccchhhccCCCC---CCEEeCcCCcCCcccCCCchhhhcCCCCCCE-EEccCcc
Q 037325 359 LPI----SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL---LKELYLASNQMNGQKISDSYQHLKNQTELRT-LVLNKAR 430 (598)
Q Consensus 359 ~~~----~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~-L~l~~n~ 430 (598)
.+. ......+.+.|++++-+++ .+|..+....+ ...++++.|++... |.. +..+..+.+ +++++|.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~el--Pk~---L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCEL--PKR---LVELKELVTDLVLSNNK 423 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhh--hhh---hHHHHHHHHHHHhhcCc
Confidence 000 0112335667777777776 55655443333 66788888887655 322 333333433 3444444
Q ss_pred CccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCC---cCCcEEEccCCcccccCCc
Q 037325 431 ISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWS---FNVTKLYLRDNSFSGLIPN 506 (598)
Q Consensus 431 l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~---~~L~~L~ls~n~l~~~~p~ 506 (598)
+ +.+|..+.. +++|+.|++++|.+. .+|..++.. .++.+|+|.|+|. .+|..+ ..++.+-.++|++...-|.
T Consensus 424 i-sfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 424 I-SFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred c-ccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 4 466666655 789999999998876 677777766 8999999999876 455543 4555666677888744444
Q ss_pred hhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 507 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
.+.. +..|+.|||.+|.+. .+|..+++|++|++|++.+|.|.
T Consensus 500 ~l~n----------m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKN----------MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Hhhh----------hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4666 999999999999998 99999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2e-34 Score=295.76 Aligned_cols=421 Identities=26% Similarity=0.300 Sum_probs=317.2
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG 186 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 186 (598)
+.+.+.-+|+.||+++|++. .+|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|..|.....+. .+..
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~---~~~~ 112 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPA---SISE 112 (1081)
T ss_pred HHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCch---hHHh
Confidence 34455566999999999988 57888888999999999999888 788888899999999999887654443 3777
Q ss_pred CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCC
Q 037325 187 LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265 (598)
Q Consensus 187 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 265 (598)
+++|++|++++|.+... |..+..++.+..+..++| .+...+. ..++.+++..|.+.+.++..+..++.
T Consensus 113 lknl~~LdlS~N~f~~~----Pl~i~~lt~~~~~~~s~N~~~~~lg~-------~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPI----PLVIEVLTAEEELAASNNEKIQRLGQ-------TSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hhcccccccchhccCCC----chhHHhhhHHHHHhhhcchhhhhhcc-------ccchhhhhhhhhcccchhcchhhhhe
Confidence 88899999999999877 567888888888888888 2222222 23788888889888888887877777
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
.|++.+|.+. ...+..+.+|+.+....|.+ ... .-.-++++.|+.++|.++...+..... +|
T Consensus 182 --~ldLr~N~~~---~~dls~~~~l~~l~c~rn~l-s~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~--------nl 243 (1081)
T KOG0618|consen 182 --QLDLRYNEME---VLDLSNLANLEVLHCERNQL-SEL----EISGPSLTALYADHNPLTTLDVHPVPL--------NL 243 (1081)
T ss_pred --eeecccchhh---hhhhhhccchhhhhhhhccc-ceE----EecCcchheeeeccCcceeeccccccc--------cc
Confidence 7999999876 23466788889998888874 211 124468999999999888544433222 79
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++++++.|++.+ +|.|++.+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+.-.. + .+...+.|++|+
T Consensus 244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~----~le~~~sL~tLd 316 (1081)
T KOG0618|consen 244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-P----FLEGLKSLRTLD 316 (1081)
T ss_pred eeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-C----cccccceeeeee
Confidence 999999999984 6799999999999999999996 88888999999999999999987654 2 356688999999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC--CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN--FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSF 500 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~--~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l 500 (598)
+..|++....+..+......+..++.+.|++. ..|..-... .|+.|.+.+|.++...... ..+|+.|+|++|++
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 99999986655444332233677777777765 233211111 6777788888887755443 46788888888888
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
. ++|..... ++..|+.|+||+|+++ .+|.++.+++.|++|...+|++. ..| ++..++.|+.+|++.|
T Consensus 396 ~-~fpas~~~---------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 396 N-SFPASKLR---------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred c-cCCHHHHh---------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 6 56654332 3777888888888887 77777777777777777777776 566 6677777777777777
Q ss_pred CCc
Q 037325 581 YLS 583 (598)
Q Consensus 581 ~l~ 583 (598)
+++
T Consensus 463 ~L~ 465 (1081)
T KOG0618|consen 463 NLS 465 (1081)
T ss_pred hhh
Confidence 765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-33 Score=276.52 Aligned_cols=367 Identities=25% Similarity=0.332 Sum_probs=233.5
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
-++.++-.|+++|.++|..+|....++++++.|.|...++. .+|..++.+.+|++|.+++|++..... .++.++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---ELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---ELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh---hhccchhh
Confidence 35667778888888887778888888888888888888887 788888888888888887766533222 14445555
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
+.+.+.+|++..... |..+..+..|..|++++|+++..| ..+..-+++-.|+
T Consensus 81 Rsv~~R~N~LKnsGi--P~diF~l~dLt~lDLShNqL~EvP--------------------------~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGI--PTDIFRLKDLTILDLSHNQLREVP--------------------------TNLEYAKNSIVLN 132 (1255)
T ss_pred HHHhhhccccccCCC--Cchhcccccceeeecchhhhhhcc--------------------------hhhhhhcCcEEEE
Confidence 555555555433221 344445555555555555555444 4444444444444
Q ss_pred ccCCcccccCC-ccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSNDLQGDIP-DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|++. .+| ..+.+++-|-.|++++|++ ..+|..+..+..|++|.+++|.+.-.--..+..++ +|+.|.
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt------sL~vLh 203 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT------SLSVLH 203 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch------hhhhhh
Confidence 4444444 223 2233444444455555542 33344444444555555555433321111122222 667777
Q ss_pred ccCcccc-ccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 350 LRFNQFT-GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 350 Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
+++.+-+ ..+|..+..+.+|..+|+|.|.+. .+|+.+..+++|+.|++++|+|+.... ......+|++|+++.
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSR 277 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhcccc
Confidence 7665432 357778888888888889888887 788888888889999999988875431 234456678888888
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCcCcc-cCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCch
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNELRG-RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPND 507 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 507 (598)
|+++ ..|..+++ ++.|+.|.+.+|+++- -+|+.++. +..|+.+..++|.+. .+|++
T Consensus 278 NQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGK--------------------L~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGK--------------------LIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred chhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhh--------------------hhhhHHHHhhccccc-cCchh
Confidence 8876 56676766 6677777777777642 13433332 335666667777776 77877
Q ss_pred hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 508 IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 508 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
++. +..|+.|.|++|.+- ++|+.|.=++.|++||+..|.-
T Consensus 335 lcR----------C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 335 LCR----------CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhh----------hHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 776 778888888888877 7888888888888888888853
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-32 Score=268.90 Aligned_cols=387 Identities=24% Similarity=0.304 Sum_probs=277.6
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcc-eecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELG-GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
-|+.+|+++ |.++ +.+|..+..++.++.|.|....+. ++|+.++.+.+|++|.+++|++. .+
T Consensus 8 FVrGvDfsg--------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~v 70 (1255)
T KOG0444|consen 8 FVRGVDFSG--------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SV 70 (1255)
T ss_pred eeecccccC--------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hh
Confidence 577888888 7787 578999999999999999999998 79999999999999999999998 66
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
-..+..++.|+.+++..|++...... ..+..+..|+.|+|++|++... |..+..-+++..|++++|+|..+|. .
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~Ev----P~~LE~AKn~iVLNLS~N~IetIPn-~ 144 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLREV----PTNLEYAKNSIVLNLSYNNIETIPN-S 144 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCC-chhcccccceeeecchhhhhhc----chhhhhhcCcEEEEcccCccccCCc-h
Confidence 67788999999999999877433322 2367889999999999999988 6788888888899999999888887 5
Q ss_pred CcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCC
Q 037325 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN 314 (598)
Q Consensus 235 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 314 (598)
.+.++..|-.||+++|++. .+|..+..+..|++|.+++|.+.-.-...+..+++|+.|.+++.+.+-..+|..+..+.+
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 5567777888888888876 456667778888888888887653222344556677777777766455667777777777
Q ss_pred CCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCC
Q 037325 315 LRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394 (598)
Q Consensus 315 L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 394 (598)
|..++++.|++. ..|+.+..+. +|+.|++|+|.++ .+....+...+|+.|++|.|+++ .+|.++..+++|+
T Consensus 224 L~dvDlS~N~Lp-~vPecly~l~------~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 224 LRDVDLSENNLP-IVPECLYKLR------NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhccccccCCC-cchHHHhhhh------hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 777777777665 3445555555 6777777777776 33344555667777777777776 6677777777777
Q ss_pred EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEc
Q 037325 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDL 474 (598)
Q Consensus 395 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~l 474 (598)
.|.+.+|+++-+.+|.. ++++ .+|+.+..++|.+. ..|..+..
T Consensus 295 kLy~n~NkL~FeGiPSG---IGKL-------------------------~~Levf~aanN~LE-lVPEglcR-------- 337 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSG---IGKL-------------------------IQLEVFHAANNKLE-LVPEGLCR-------- 337 (1255)
T ss_pred HHHhccCcccccCCccc---hhhh-------------------------hhhHHHHhhccccc-cCchhhhh--------
Confidence 77777776665444432 2333 34555555555543 33333221
Q ss_pred ccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 475 SFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 475 s~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
++.|+.|.|+.|++- .+|..|.- ++.|+.||+.+|.=.-..|.--..-+.|+.-++.
T Consensus 338 ------------C~kL~kL~L~~NrLi-TLPeaIHl----------L~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 338 ------------CVKLQKLKLDHNRLI-TLPEAIHL----------LPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ------------hHHHHHhccccccee-echhhhhh----------cCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 345666777777765 78888887 8999999999997552333222222566665554
Q ss_pred C
Q 037325 555 N 555 (598)
Q Consensus 555 ~ 555 (598)
.
T Consensus 395 F 395 (1255)
T KOG0444|consen 395 F 395 (1255)
T ss_pred e
Confidence 4
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-31 Score=274.77 Aligned_cols=421 Identities=25% Similarity=0.316 Sum_probs=248.3
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP 155 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 155 (598)
++.+||+++ +..+..|..+..+.+|+.|+++.|.+. ..|....++++|++|.|.+|.+. .+|
T Consensus 46 ~L~~l~lsn---------------n~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP 107 (1081)
T KOG0618|consen 46 KLKSLDLSN---------------NQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLP 107 (1081)
T ss_pred eeEEeeccc---------------cccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCc
Confidence 478899986 445678888999999999999999998 57888899999999999999888 899
Q ss_pred hhccCCCCCCEEEccCCCCCCCccChhhhcCCCC-------------------CcEEEcCCCCCCCCcccchHhhhcCCC
Q 037325 156 QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS-------------------LVYFNLGGADLSKAGAYWLEVFNKLHS 216 (598)
Q Consensus 156 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~-------------------L~~L~l~~n~~~~~~~~~~~~~~~l~~ 216 (598)
.++..+.+|++|+++.|.+...+.. +..+.. ++++++..|.+.+.. ...+..++.
T Consensus 108 ~~~~~lknl~~LdlS~N~f~~~Pl~---i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~---~~~i~~l~~ 181 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFGPIPLV---IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF---LIDIYNLTH 181 (1081)
T ss_pred hhHHhhhcccccccchhccCCCchh---HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch---hcchhhhhe
Confidence 9999999999999999887544332 222333 444444444444332 222333332
Q ss_pred CCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 217 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
.|++.+|.+.. .....+++|+.+....|++.... -.-++++.|+...|.++...+. ....+|++++++
T Consensus 182 --~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis 249 (1081)
T KOG0618|consen 182 --QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDIS 249 (1081)
T ss_pred --eeecccchhhh----hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecc
Confidence 35666665551 22334455666666555544221 1224566666666665522211 123456666666
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccC
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQ 376 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 376 (598)
.|++ ..+|+++..+.+|+.++..+|+++ ..|......+ +|++|.+.+|.+. .+|....+++.|+.|++..
T Consensus 250 ~n~l--~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~------~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 250 HNNL--SNLPEWIGACANLEALNANHNRLV-ALPLRISRIT------SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred hhhh--hcchHHHHhcccceEecccchhHH-hhHHHHhhhh------hHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 6663 334566666666666666666663 2333333333 5666666666665 3455556666666666666
Q ss_pred CcCCccchhhccCCCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCc
Q 037325 377 NSFLGSIPPSIGNLTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 377 n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|++....+..+.-... |+.++.+.|++....... =...+.|+.|++.+|++++..-+.+.. .++|+.|+|++|+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~----e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE----ENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNR 394 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhcccccccccc----chhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccc
Confidence 6666322222222222 555555655554332110 122344666666666666554444433 4556666666666
Q ss_pred CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 456 ~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
+. .+|+... ..++.|+.|+||+|+++ .+|..+.. ++.|++|...+|.+.
T Consensus 395 L~-~fpas~~-------------------~kle~LeeL~LSGNkL~-~Lp~tva~----------~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 395 LN-SFPASKL-------------------RKLEELEELNLSGNKLT-TLPDTVAN----------LGRLHTLRAHSNQLL 443 (1081)
T ss_pred cc-cCCHHHH-------------------hchHHhHHHhcccchhh-hhhHHHHh----------hhhhHHHhhcCCcee
Confidence 54 2333211 12455666667777766 56666655 666666666666666
Q ss_pred cccchhccCCCCCCEEECCCCcCccc-cchhccCCCCCCEEEccCCC
Q 037325 536 GEIPLLFSNISFLYILDMSNNSLSGS-TPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 536 ~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~~L~l~~n~ 581 (598)
..| .+.++++|+++|+|.|+++.. +|..... ++|++||++||.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 566 566667777777777766533 2322222 566777777665
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.6e-22 Score=231.98 Aligned_cols=347 Identities=19% Similarity=0.168 Sum_probs=247.3
Q ss_pred hhhhcCCCCCcEEEcCCCCCCC---CcccchHhhhcCC-CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCc
Q 037325 181 LEWLSGLSSLVYFNLGGADLSK---AGAYWLEVFNKLH-SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT 256 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 256 (598)
...|.++++|+.|.+..+.... ....++..+..++ +|+.|++.++.+..+|..+ ...+|++|++.+|++. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccc-cc
Confidence 3457777777777776543221 1111244555554 6888888888888887633 3578889999988876 45
Q ss_pred chhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCC
Q 037325 257 PHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 257 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+..+..+++|+.|+++++.....+|. +..+++|++|++++|. ....+|..+..+++|+.|++++|...+..|..+ .+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 66677888899999988765556664 7778889999998887 456778888888999999998876555555433 33
Q ss_pred CCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc---cCCCchh
Q 037325 337 SECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ---KISDSYQ 413 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~ 413 (598)
. +|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++..... ..+....
T Consensus 704 ~------sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 704 K------SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred C------CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh
Confidence 3 7889999888665555532 467888999988876 566544 577888888876432111 0000001
Q ss_pred hhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEE
Q 037325 414 HLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL 493 (598)
Q Consensus 414 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L 493 (598)
....+++|+.|++++|...+.+|..+.. +++|+.|++++|...+.+|.......|+.|++++|.....+|....+|+.|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEe
Confidence 1233568899999998877778887765 788999999988766677776644478888888887767777777788888
Q ss_pred EccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCc
Q 037325 494 YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNS 557 (598)
Q Consensus 494 ~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 557 (598)
++++|.++ .+|..+.. +++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 852 ~Ls~n~i~-~iP~si~~----------l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEK----------FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCc-cChHHHhc----------CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88888887 67877766 7888888888754333677778888888888888884
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-25 Score=208.95 Aligned_cols=412 Identities=21% Similarity=0.210 Sum_probs=243.2
Q ss_pred CCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccC-CCCCCCccChhhhcCCCCCcEE
Q 037325 115 LEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN-FLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 115 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~l~~L~~L 193 (598)
-..++|..|.|+.+ .|..|..+++|+.|||++|+|+..-|.+|..+++|.+|.+.+ |.+ .......|.++..++.|
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI--~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI--TDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch--hhhhhhHhhhHHHHHHH
Confidence 34566666666644 444566666666666666666656666666666666655554 332 22223457777777777
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCC------------Ccchhhh
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS------------TTPHWLF 261 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~ 261 (598)
.+.-|++.-.. .+.|..+++|..|.+.+|.+..+.. ..+..+.+++.+.+..|.+.. ..|..++
T Consensus 146 llNan~i~Cir---~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 146 LLNANHINCIR---QDALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred hcChhhhcchh---HHHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 77777777665 6788888999999999998887776 566677888888888876321 1111112
Q ss_pred cCCCCCEEEccCCcccccCCccccCC-CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCC
Q 037325 262 NITSLLCLDLGSNDLQGDIPDGFASL-NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 340 (598)
...-..-..+.+.++....+..+... ..+.+=-.+.+..........|..+++|++|++++|++++..+.+|.+..
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a--- 298 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA--- 298 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh---
Confidence 22222222233333332222222211 12211112222212333335688889999999999999988888888887
Q ss_pred CCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCC
Q 037325 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 341 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~ 420 (598)
.+++|.+..|++...-...|.++..|+.|++++|+++...|.+|..+.+|.+|++-.|.+...- . +.|+...
T Consensus 299 ---~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-~--l~wl~~W-- 370 (498)
T KOG4237|consen 299 ---ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-R--LAWLGEW-- 370 (498)
T ss_pred ---hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc-c--hHHHHHH--
Confidence 7899999999887666667788888999999999998888888888888999998888765322 1 1111110
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc---cCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEE-Ecc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG---RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL-YLR 496 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~---~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L-~ls 496 (598)
+.+....|. |.+ +....++.+++++..+.. ..|++.+ +.-++..|...+.+.+. .-|
T Consensus 371 -----lr~~~~~~~-~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~-----------~~~s~~cP~~c~c~~tVvRcS 431 (498)
T KOG4237|consen 371 -----LRKKSVVGN-PRC--QSPGFVRQIPISDVAFGDFRCGGPEELG-----------CLTSSPCPPPCTCLDTVVRCS 431 (498)
T ss_pred -----HhhCCCCCC-CCC--CCCchhccccchhccccccccCCccccC-----------CCCCCCCCCCcchhhhhHhhc
Confidence 111111111 111 112345566666654432 1222211 11122333333333332 233
Q ss_pred CCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 037325 497 DNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576 (598)
Q Consensus 497 ~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~ 576 (598)
+..+. .+|..+- ...+.|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.++++|.+|-
T Consensus 432 nk~lk-~lp~~iP------------~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 432 NKLLK-LLPRGIP------------VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred ccchh-hcCCCCC------------chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence 33333 5555542 34566777777777 66665 55666 677777777644455667777777777
Q ss_pred ccCC
Q 037325 577 LRNN 580 (598)
Q Consensus 577 l~~n 580 (598)
+++|
T Consensus 495 lsyn 498 (498)
T KOG4237|consen 495 LSYN 498 (498)
T ss_pred EecC
Confidence 7665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.1e-21 Score=225.03 Aligned_cols=338 Identities=20% Similarity=0.183 Sum_probs=264.4
Q ss_pred hHhhhcCCCCCEEEcCCCCCCC------CCCCCCcCCC-CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC
Q 037325 208 LEVFNKLHSFVELHLPNCNLPS------LPLSFPSLNF-ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l~~------~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 280 (598)
...|..+++|+.|.+..+.... ..+ ..+..+ .+|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 5678999999999997664321 111 222233 46999999999876 556655 5689999999999987 57
Q ss_pred CccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCc
Q 037325 281 PDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360 (598)
Q Consensus 281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 360 (598)
+..+..+++|+.|+++++. ....+|. +..+++|+.|++++|......|..+..+. +|+.|++++|...+.+|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~------~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN------KLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccccCCCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccC------CCCEEeCCCCCCcCccC
Confidence 7778889999999999886 3355564 78899999999999987778888888777 89999999986666777
Q ss_pred cccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc---c---c
Q 037325 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS---D---T 434 (598)
Q Consensus 361 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~---~ 434 (598)
..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+... |.. ..+++|+.|.+.++... + .
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l--P~~----~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF--PSN----LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc--ccc----ccccccccccccccchhhccccccc
Confidence 655 7899999999999776666643 46899999999998654 332 25678888888774321 1 1
Q ss_pred cchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC--CcCCcEEEccCCcccccCCchhhcc
Q 037325 435 ISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW--SFNVTKLYLRDNSFSGLIPNDIGQN 511 (598)
Q Consensus 435 ~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~--~~~L~~L~ls~n~l~~~~p~~~~~~ 511 (598)
.+......+++|++|++++|...+.+|..+... .|+.|++++|...+.+|.. +++|+.|++++|.....+|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc----
Confidence 122223336789999999999888899988876 8999999998766677764 689999999998755455532
Q ss_pred cCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCC
Q 037325 512 LPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 512 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (598)
.++|+.|+|++|.++ .+|.++.++++|++|++++|.--..+|..+..+++|+.+++++|.
T Consensus 845 ---------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 468999999999998 899999999999999999964434688888999999999999985
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.3e-22 Score=216.02 Aligned_cols=264 Identities=22% Similarity=0.262 Sum_probs=155.1
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|++ . .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~L-t-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCcc-C-cccCc---ccccceeec
Confidence 4567888888887 4565554 46888888888877 3554 246788888888874 3 33432 356777777
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+.... ..+ . +|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++
T Consensus 270 s~N~L~~Lp-~lp---~------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 270 FSNPLTHLP-ALP---S------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cCCchhhhh-hch---h------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 777665322 111 1 57777777777763 443 23567777777777763 3331 23566677777
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+++. |. ...+|+.|++++|++++. |.. ...|..|++++|++++ +|... ..|+.|++++|+++
T Consensus 332 N~L~~L--P~------lp~~Lq~LdLS~N~Ls~L-P~l----p~~L~~L~Ls~N~L~~-LP~l~--~~L~~LdLs~N~Lt 395 (788)
T PRK15387 332 NQLTSL--PT------LPSGLQELSVSDNQLASL-PTL----PSELYKLWAYNNRLTS-LPALP--SGLKELIVSGNRLT 395 (788)
T ss_pred Cccccc--cc------cccccceEecCCCccCCC-CCC----Ccccceehhhcccccc-Ccccc--cccceEEecCCccc
Confidence 776643 21 113567777777776642 221 3456666677666663 44321 24566666666665
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
+ +|...++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|.+++
T Consensus 396 ~-LP~l~s~L~~LdLS~N~Ls-sIP~l-------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 396 S-LPVLPSELKELMVSGNRLT-SLPML-------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred C-CCCcccCCCEEEccCCcCC-CCCcc-------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 3 4444455666666666665 34432 234555666666665 556666666666666666666666
Q ss_pred ccchhc
Q 037325 561 STPESI 566 (598)
Q Consensus 561 ~~p~~l 566 (598)
..|..+
T Consensus 460 ~~~~~L 465 (788)
T PRK15387 460 RTLQAL 465 (788)
T ss_pred hHHHHH
Confidence 555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=1.1e-21 Score=209.05 Aligned_cols=266 Identities=23% Similarity=0.258 Sum_probs=172.6
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEE
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 294 (598)
..-..|+++++.++.+|... . ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l--~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL--P--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch--h--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence 34567778888777766522 1 467788888887774 443 2467788888888777 34532 35677788
Q ss_pred CcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEc
Q 037325 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 374 (598)
+.+|.+ . .+|.. .++|+.|++++|+++... .. .+ +|+.|++++|++++ +|.. ..+|+.|++
T Consensus 269 Ls~N~L-~-~Lp~l---p~~L~~L~Ls~N~Lt~LP-~~---p~------~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 269 IFSNPL-T-HLPAL---PSGLCKLWIFGNQLTSLP-VL---PP------GLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred ccCCch-h-hhhhc---hhhcCEEECcCCcccccc-cc---cc------ccceeECCCCcccc-CCCC---ccccccccc
Confidence 887773 2 33432 246777788877776432 11 12 67788888887774 3432 245677777
Q ss_pred cCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCC
Q 037325 375 WQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454 (598)
Q Consensus 375 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 454 (598)
++|+++ .+|. -..+|+.|++++|++++. |. ..++|+.|++++|++++ +|.. ..+|+.|++++|
T Consensus 330 s~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~L--P~------lp~~L~~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N 392 (788)
T PRK15387 330 YNNQLT-SLPT---LPSGLQELSVSDNQLASL--PT------LPSELYKLWAYNNRLTS-LPAL----PSGLKELIVSGN 392 (788)
T ss_pred ccCccc-cccc---cccccceEecCCCccCCC--CC------CCcccceehhhcccccc-Cccc----ccccceEEecCC
Confidence 777776 3443 124677888888877753 22 12457777788887774 3432 346778888888
Q ss_pred cCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 455 ~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
++++ +|... ..++.|++++|++++ +|..+.+|+.|++++|+++ .+|..++. ++.|+.|+|++|++
T Consensus 393 ~Lt~-LP~l~--s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~----------L~~L~~LdLs~N~L 457 (788)
T PRK15387 393 RLTS-LPVLP--SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIH----------LSSETTVNLEGNPL 457 (788)
T ss_pred cccC-CCCcc--cCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhh----------ccCCCeEECCCCCC
Confidence 7774 44322 257778888888774 5655667777888888877 67777766 77788888888888
Q ss_pred ccccchhcc
Q 037325 535 SGEIPLLFS 543 (598)
Q Consensus 535 ~~~~p~~~~ 543 (598)
++.+|..+.
T Consensus 458 s~~~~~~L~ 466 (788)
T PRK15387 458 SERTLQALR 466 (788)
T ss_pred CchHHHHHH
Confidence 877776653
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-22 Score=190.80 Aligned_cols=401 Identities=24% Similarity=0.211 Sum_probs=264.3
Q ss_pred CCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCC
Q 037325 138 KELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 217 (598)
+.-..++|..|+|+...|..|+.+++|+.|||++ |.++.+. ++.|.++.+|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~--------------------------N~Is~I~---p~AF~GL~~l 117 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK--------------------------NNISFIA---PDAFKGLASL 117 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccc--------------------------cchhhcC---hHhhhhhHhh
Confidence 3456788999999844445566666666666555 4555554 6778888887
Q ss_pred CEEEcCC-CCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCc-cccCCCCccEEEC
Q 037325 218 VELHLPN-CNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD-GFASLNSLQELDL 295 (598)
Q Consensus 218 ~~L~l~~-~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l 295 (598)
.+|.+.+ |+|++++. ..+.++.+++.|.+.-|++.-...+.+..++++..|.+.+|.+. .++. .+..+..++.+.+
T Consensus 118 ~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 118 LSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhh
Confidence 7776666 78888877 77888899999999999998888888999999999999999887 4444 7788889999999
Q ss_pred cCCCcCccc-----------cchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEE---EccCccccccCcc
Q 037325 296 SGNSFLGGQ-----------LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL---ELRFNQFTGILPI 361 (598)
Q Consensus 296 ~~n~~~~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L---~Ls~n~l~~~~~~ 361 (598)
..|+++..- .|..++.........+.+.++..+.+..|.. +++.+ -.+.+...+.-|.
T Consensus 196 A~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--------~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 196 AQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--------SLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--------hHHhHHHhhccccCcCCcChH
Confidence 888843221 2233333444444445555555444433332 22222 1223333334443
Q ss_pred -ccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHH
Q 037325 362 -SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440 (598)
Q Consensus 362 -~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (598)
.|..+++|++|++++|++++.-+.+|.....+++|.+..|++.... . ..+.++..|+.|++.+|+|+...|..|.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~---~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-S---GMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-H---HhhhccccceeeeecCCeeEEEeccccc
Confidence 6788999999999999999888888999999999999999886432 1 3477888899999999999988888776
Q ss_pred hcCCCCCEEEccCCcCcccCCCCcccCCCCEE--EcccCcCcccCCCC-CcCCcEEEccCCcccc---cCCchhhcccCC
Q 037325 441 QLSLTLDELDVAYNELRGRVPNSLGFNFPAKV--DLSFNNFEGRLLLW-SFNVTKLYLRDNSFSG---LIPNDIGQNLPF 514 (598)
Q Consensus 441 ~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l--~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~---~~p~~~~~~~~~ 514 (598)
. ...|.+|.+-.|.+... +.+.++ -+..+...|..|.. ...++.++++...+.+ ..|++.+-.. .
T Consensus 344 ~-~~~l~~l~l~~Np~~Cn-------C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-s 414 (498)
T KOG4237|consen 344 T-LFSLSTLNLLSNPFNCN-------CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-S 414 (498)
T ss_pred c-cceeeeeehccCcccCc-------cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC-C
Confidence 5 56889999988877531 111111 12233333444433 3456777777665532 2233222100 0
Q ss_pred CCCccccCCCCeE-eCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCc
Q 037325 515 LTDLGNLKQLITL-VISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC 593 (598)
Q Consensus 515 ~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~ 593 (598)
-+.=..++-+.+. ..|+..++ .+|..+. ..-.+|.+.+|.++ .+|.+ .+.+| .+|+++|+++----..|.++
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccch
Confidence 0000223344333 33444444 6666554 45568899999998 78887 67888 99999999985444556666
Q ss_pred CCCC
Q 037325 594 TFQE 597 (598)
Q Consensus 594 ~~L~ 597 (598)
+.|.
T Consensus 488 tql~ 491 (498)
T KOG4237|consen 488 TQLS 491 (498)
T ss_pred hhhh
Confidence 6553
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=5.3e-20 Score=184.03 Aligned_cols=289 Identities=24% Similarity=0.290 Sum_probs=139.1
Q ss_pred EEccCCCCC-CCcchhhhcCCCCCEEEccCCccccc----CCccccCCCCccEEECcCCCcCc------cccchhhcCCC
Q 037325 245 LDLSNNDFN-STTPHWLFNITSLLCLDLGSNDLQGD----IPDGFASLNSLQELDLSGNSFLG------GQLSRNLGKLC 313 (598)
Q Consensus 245 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~l~~l~ 313 (598)
|+|..+.++ ......+..++.|+.++++++.++.. ++..+...+++++++++++. .. ..++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcC
Confidence 445555554 23333444555566666666665422 23334445556666666655 22 11233444555
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc----CccccCCC-CCCCEEEccCCcCCccchhhcc
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI----LPISLGSL-KNLRHLVLWQNSFLGSIPPSIG 388 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~ls~n~l~~~~~~~l~ 388 (598)
+|+.|++++|.+.+..+..+..+... ++|++|++++|++.+. +...+..+ ++|+.|++++|.++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-------- 150 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE-------- 150 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC--------
Confidence 66666666665554444444333311 1355555555554421 11222333 44444444444444
Q ss_pred CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh---cCCCCCEEEccCCcCcccCCCCcc
Q 037325 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ---LSLTLDELDVAYNELRGRVPNSLG 465 (598)
Q Consensus 389 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~p~~~~ 465 (598)
+.........+..+++|++|++++|.+++.....+.. ..+.|++|++++|.+++.....+.
T Consensus 151 ----------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 151 ----------------GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred ----------------chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 2211111122333444444555444444322111111 123455555555544322111110
Q ss_pred cCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc----ccchh
Q 037325 466 FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG----EIPLL 541 (598)
Q Consensus 466 ~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~ 541 (598)
.....+++|++|++++|.+++.....+...+ + ...+.|+.|++++|.++. .+...
T Consensus 215 ----------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---~--~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 215 ----------------ETLASLKSLEVLNLGDNNLTDAGAAALASAL---L--SPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred ----------------HHhcccCCCCEEecCCCcCchHHHHHHHHHH---h--ccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 0011234566666666666653333332200 0 013678888888888762 34556
Q ss_pred ccCCCCCCEEECCCCcCccc----cchhccCC-CCCCEEEccCCCC
Q 037325 542 FSNISFLYILDMSNNSLSGS----TPESIGSL-RTVKFLVLRNNYL 582 (598)
Q Consensus 542 ~~~l~~L~~L~ls~N~l~~~----~p~~l~~l-~~L~~L~l~~n~l 582 (598)
+..+++|+++++++|.++.. +...+... +.|+++++.+|++
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 66778888888888888754 44444444 6888888888764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.1e-18 Score=187.58 Aligned_cols=246 Identities=22% Similarity=0.281 Sum_probs=172.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
.+...|+++++.++ .+|..+. +.|+.|++++|.+ . .+|..+. ++|+.|++++|+++.. |..+. .
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~L-t-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~------ 241 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNEL-K-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--D------ 241 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCC-C-cCChhhc--cCCCEEECCCCccccC-Chhhh--c------
Confidence 35678999999888 5676553 5799999999984 3 4665553 5899999999988753 43322 1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++.. |..+ .+.|+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L--P~~l-----p~sL~~ 308 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL--PAHL-----PSGITH 308 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC--cccc-----hhhHHH
Confidence 6899999999988 5666554 57999999999888 5666553 5899999999988764 3211 246888
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCC-CcCCcEEEccCCcccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW-SFNVTKLYLRDNSFSG 502 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~ 502 (598)
|++++|+++.. |..+ .++|+.|++++|.+++ +|..+. ..|+.|++++|++.. +|.. .++|+.|++++|+++
T Consensus 309 L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 309 LNVQSNSLTAL-PETL---PPGLKTLEAGENALTS-LPASLP-PELQVLDVSKNQITV-LPETLPPTITTLDVSRNALT- 380 (754)
T ss_pred HHhcCCccccC-Cccc---cccceeccccCCcccc-CChhhc-CcccEEECCCCCCCc-CChhhcCCcCEEECCCCcCC-
Confidence 88898888753 4322 3578888888888875 554443 367777888777763 3433 356777777777777
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc----cCCCCCCEEECCCCcCc
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF----SNISFLYILDMSNNSLS 559 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~ 559 (598)
.+|..+. .+|+.|++++|+++ .+|..+ +.++.+..|++.+|.++
T Consensus 381 ~LP~~l~------------~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 NLPENLP------------AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCHhHH------------HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5665543 35777777777776 444433 34467777777777776
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.5e-19 Score=188.38 Aligned_cols=295 Identities=21% Similarity=0.309 Sum_probs=216.1
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
.+..+|+++++.++. +|..+ .++++.|++++|.++ .+|..+. ++|++|++++|.+ . .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL-T-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc-c-cCChhhh--ccccEEE
Confidence 456889999998884 55544 358999999999998 5676554 5899999999984 3 5666553 4799999
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.. +|..+. . +|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 248 Ls~N~L~~-LP~~l~--s------~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 248 LSINRITE-LPERLP--S------ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred CcCCccCc-CChhHh--C------CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 99999884 444433 2 7999999999998 4676553 58999999999998 4555443 479999999
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcC
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNF 479 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l 479 (598)
+|.++.. |.. -.++|+.|++++|.+++ +|..+ +++|+.|++++|+++ .+|..+. ..|+.|++++|++
T Consensus 313 ~N~Lt~L--P~~-----l~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~L 379 (754)
T PRK15370 313 SNSLTAL--PET-----LPPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNAL 379 (754)
T ss_pred CCccccC--Ccc-----ccccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcC
Confidence 9999864 321 23689999999999986 45443 468999999999998 4665443 4799999999999
Q ss_pred cccCCCC-CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 480 EGRLLLW-SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 480 ~~~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
.. +|.. ..+|+.|++++|+++ .+|..+..+ ...++.+..|++.+|.++. ..+++|+.| ++.+.+
T Consensus 380 t~-LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~------~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~ 444 (754)
T PRK15370 380 TN-LPENLPAALQIMQASRNNLV-RLPESLPHF------RGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGY 444 (754)
T ss_pred CC-CCHhHHHHHHHHhhccCCcc-cCchhHHHH------hhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccc
Confidence 85 4544 457999999999998 677665431 1235789999999999982 344555555 455555
Q ss_pred cc-ccchhccCCCCCCEEEccCCCCcccCC
Q 037325 559 SG-STPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 559 ~~-~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
.| .++..++.+++++....-++.+.+.+|
T Consensus 445 ~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~ 474 (754)
T PRK15370 445 QGPRVLFAMGDFSIVRVTRPLHQAVQGWLT 474 (754)
T ss_pred cCCcccccccccccccccchHHHHHhccCC
Confidence 44 345556666666655545555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=4e-19 Score=177.67 Aligned_cols=235 Identities=25% Similarity=0.250 Sum_probs=123.3
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
.|+|+.+.+.+.. +...+..++.|++++++++.++.... ..++..+...+.++++++
T Consensus 2 ~l~L~~~~l~~~~--~~~~~~~l~~L~~l~l~~~~l~~~~~---------------------~~i~~~l~~~~~l~~l~l 58 (319)
T cd00116 2 QLSLKGELLKTER--ATELLPKLLCLQVLRLEGNTLGEEAA---------------------KALASALRPQPSLKELCL 58 (319)
T ss_pred ccccccCcccccc--hHHHHHHHhhccEEeecCCCCcHHHH---------------------HHHHHHHhhCCCceEEec
Confidence 3556666665332 24445555556666666655533210 012223333444455555
Q ss_pred cCCcccc------cCCccccCCCCccEEECcCCCcCccccchhhcCCCC---CCEEecccccCCcccch----hhhCC-C
Q 037325 272 GSNDLQG------DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN---LRTMILSRNNISSEVSD----FLDGL-S 337 (598)
Q Consensus 272 ~~n~l~~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~----~~~~l-~ 337 (598)
+++.+.+ .++..+..+++|+.|++++|. +....+..+..+.+ |++|++++|++.+.... .+... +
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 59 SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred cccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 4444331 122334455666666666666 33333333433333 77777777766642222 22222 2
Q ss_pred CCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCC
Q 037325 338 ECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKIS 409 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 409 (598)
+|+.|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++....
T Consensus 138 ------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 138 ------ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred ------CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 678888888877632 233455667788888888877642 333445566788888888877644311
Q ss_pred CchhhhcCCCCCCEEEccCccCccccchHHHhcC----CCCCEEEccCCcC
Q 037325 410 DSYQHLKNQTELRTLVLNKARISDTISDWFWQLS----LTLDELDVAYNEL 456 (598)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~ls~n~~ 456 (598)
.....+..+++|++|++++|.+++.....+...+ +.|++|++++|.+
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1223345566777777777776654433333221 3444444444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1e-17 Score=139.87 Aligned_cols=181 Identities=28% Similarity=0.477 Sum_probs=105.5
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
.++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++.-
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~------------------ 93 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI------------------ 93 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc------------------
Confidence 4555555555555 33444555555555555555555 444455555555555555544432
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~ 503 (598)
.|..|.. ++.|+.||+++|++... .+.|.++ .+..|+.|++++|.|. -
T Consensus 94 -----------lprgfgs-~p~levldltynnl~e~------------------~lpgnff-~m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 94 -----------LPRGFGS-FPALEVLDLTYNNLNEN------------------SLPGNFF-YMTTLRALYLGDNDFE-I 141 (264)
T ss_pred -----------CccccCC-Cchhhhhhccccccccc------------------cCCcchh-HHHHHHHHHhcCCCcc-c
Confidence 2222322 44555555555544321 1111110 1345677777777776 6
Q ss_pred CCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCC---CCCEEEccCC
Q 037325 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR---TVKFLVLRNN 580 (598)
Q Consensus 504 ~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~---~L~~L~l~~n 580 (598)
+|.++++ +++||.|.+.+|.+- ++|..++.++.|++|++.+|+++ .+|.+++++. +=+...+.+|
T Consensus 142 lp~dvg~----------lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 142 LPPDVGK----------LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred CChhhhh----------hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhC
Confidence 7777777 788888888888877 78888888888888888888887 6777776653 2244555666
Q ss_pred CCcccCCc
Q 037325 581 YLSGKLPL 588 (598)
Q Consensus 581 ~l~g~~P~ 588 (598)
+.-..|-+
T Consensus 210 Pwv~pIae 217 (264)
T KOG0617|consen 210 PWVNPIAE 217 (264)
T ss_pred CCCChHHH
Confidence 65544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-16 Score=133.65 Aligned_cols=184 Identities=27% Similarity=0.433 Sum_probs=144.4
Q ss_pred cCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 236 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
+..+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|++. .+|..+..+++|+.|++.-|++ ...|..|+.+|.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchh
Confidence 345677888899999988 45666888999999999999988 7888899999999999999885 5678999999999
Q ss_pred CEEecccccCCcc-cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCC
Q 037325 316 RTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394 (598)
Q Consensus 316 ~~L~l~~n~l~~~-~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 394 (598)
+.|++.+|++... .|.-|-.+. .|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|+
T Consensus 105 evldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999988753 344444444 6888999999997 78889999999999999999888 7888999999999
Q ss_pred EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcc
Q 037325 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433 (598)
Q Consensus 395 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 433 (598)
+|.+.+|+++..+ | .+..+.-..+-+.+.+.+|.+..
T Consensus 177 elhiqgnrl~vlp-p-el~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 177 ELHIQGNRLTVLP-P-ELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHhcccceeeecC-h-hhhhhhhhhhHHHHhhhhCCCCC
Confidence 9999999988654 3 22223323333444455555443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=7.8e-14 Score=149.81 Aligned_cols=129 Identities=34% Similarity=0.537 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC----CcccEEecC--CC--CcEEEEEcCCCCCCCCCCcccCCCCCcc
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSWVGEDCC----SWSGVSCNN--RT--ASVIKLNLNNPFRDSFGSFEDDAGHELG 102 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l~ 102 (598)
.+.++|.+||+.+|+++..+.. .+|.+..|| .|.||.|.. .. .+|+.|+|++ +++.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------n~L~ 431 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------QGLR 431 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC--------------CCcc
Confidence 4567899999999998865532 479776664 799999952 22 2599999998 7999
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCC
Q 037325 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQS 176 (598)
Q Consensus 103 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~ 176 (598)
|.+|..+.++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 99999999999999999999999986 99999999999999999999999999999999999999998876643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=1.8e-12 Score=121.27 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchH
Q 037325 365 SLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 438 (598)
.-+.|+++...+|++... +...+...+.|+.+.+..|.|....+......+..+++|++||+.+|.++......
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 345677777777766533 22345556777777777776654332223355666777777777777666544433
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.5e-12 Score=122.57 Aligned_cols=218 Identities=26% Similarity=0.234 Sum_probs=118.0
Q ss_pred cCCCCCCEEECcCCCCCcccc--hhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh
Q 037325 135 GSLKELRYLNLSGSFFSGTIP--QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 212 (598)
.++.+|+.+.|.++.+. ..+ .....|++++.|||++|-+...... .....
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---------------------------~~i~e 169 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPV---------------------------LKIAE 169 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHH---------------------------HHHHH
Confidence 44566666666666554 222 2334455555555555433322222 33444
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc-hhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP-HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
.+++|+.|+++.|.+........-..+++|+.|.++.|.++...- ..+..+|+|+.|++..|...........-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 555555555555555443332333355778888888887764322 2345678888888888852222222234456788
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-CccccCCCCCCC
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNLR 370 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~ 370 (598)
+|+|++|++..-..-...+.++.|..|+++.+.+...-............+++|++|++..|++... ....+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 8888888864433335567788888888888876543221111111111222677777777766422 111333445555
Q ss_pred EEEccCCcCC
Q 037325 371 HLVLWQNSFL 380 (598)
Q Consensus 371 ~L~ls~n~l~ 380 (598)
.|.+..|.+.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 6665555554
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=1.9e-11 Score=131.58 Aligned_cols=109 Identities=26% Similarity=0.361 Sum_probs=88.5
Q ss_pred CCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCC
Q 037325 469 PAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNI 545 (598)
Q Consensus 469 L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 545 (598)
++.|+|++|.+.|.+|.. +++|+.|+|++|+++|.+|..++. +++|+.|+|++|+++|.+|..++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~----------l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS----------ITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC----------CCCCCEEECCCCCCCCCCchHHhcC
Confidence 667888888888888765 578888888888888888887777 7888888888888888888888888
Q ss_pred CCCCEEECCCCcCccccchhccCC-CCCCEEEccCCCCcccCC
Q 037325 546 SFLYILDMSNNSLSGSTPESIGSL-RTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 546 ~~L~~L~ls~N~l~~~~p~~l~~l-~~L~~L~l~~n~l~g~~P 587 (598)
++|++|+|++|+++|.+|..+... .++..+++.+|+..+..|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888888888888887663 467788888887554455
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=3.4e-12 Score=119.33 Aligned_cols=140 Identities=26% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCccEEECcCCCcCcc---ccchhhcCCCCCCEEecccccCCcccch----hhhCCCCCCCCCCccEEEccCcccccc
Q 037325 286 SLNSLQELDLSGNSFLGG---QLSRNLGKLCNLRTMILSRNNISSEVSD----FLDGLSECTNSILLEKLELRFNQFTGI 358 (598)
Q Consensus 286 ~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 358 (598)
.-++|+.+...+|++..+ .+...+...+.|+.+.+..|.+...... .+...+ .|+.||+.+|.++..
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~------~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP------HLEVLDLRDNTFTLE 228 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC------cceeeecccchhhhH
Confidence 345566666666663111 1233445556666666666655443331 122222 566666666655422
Q ss_pred ----CccccCCCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 359 ----LPISLGSLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 359 ----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+...+..++.|+.|++++|.+...-...+ ...|+|+.+.+.+|.|+..............+.|+.|++++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 22334455566666666665544322221 234566666666666653321222223344555666666666
Q ss_pred cC
Q 037325 430 RI 431 (598)
Q Consensus 430 ~l 431 (598)
++
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 55
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-11 Score=118.71 Aligned_cols=210 Identities=22% Similarity=0.231 Sum_probs=101.6
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--cchhhhcCCCCCEEEccCCcccccCCcc-ccCCCCc
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST--TPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSL 290 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 290 (598)
+.+|+++.+.++.+...+.......|++++.||++.|-++.- +......+|+|+.|+++.|.+....... -..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 344444444444444333222333455555555555544431 1222345566666666666554221111 1234556
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-ccccCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL-PISLGSLKNL 369 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L 369 (598)
+.|.++.|.+....+...+..+|+|+.|++..|...........-++ .|++|||++|++...- ....+.++.|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ------TLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh------HHhhccccCCcccccccccccccccch
Confidence 66666666644444444555666666666666642221111122222 4666666666554221 1234556666
Q ss_pred CEEEccCCcCCcc-chhh-----ccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 370 RHLVLWQNSFLGS-IPPS-----IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 370 ~~L~ls~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
+.|+++.|.+... .|+. ...+++|++|++..|++.+.. ++..+..+++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccchhhccchhhhhhccccccc
Confidence 6666666655432 1221 234566666666666664321 2233444555555555555554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=7.8e-12 Score=123.95 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=110.3
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
..|++.|++. ++|..+..+..|+.+.+..|.+.-.+ ..+.++..|+.++++.|++. ..|..++. --|+.|.
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip-----~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli 149 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIP-----EAICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLI 149 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccceecc-----hhhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEE
Confidence 3444444444 44444444444444444444433221 12333444444444444444 23333333 2488889
Q ss_pred ccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCC--CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeE
Q 037325 451 VAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLL--WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 451 ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
+++|+++ .+|..++.. .+..+|.+.|.+....+. .+.+|+.|.+..|++. .+|++++. |+ |..|
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~----------Lp-Li~l 216 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS----------LP-LIRL 216 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC----------Cc-eeee
Confidence 9999987 567666633 677778888877643332 2466777777778777 56666554 43 7778
Q ss_pred eCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCC---CCCEEEccCCC
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR---TVKFLVLRNNY 581 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~---~L~~L~l~~n~ 581 (598)
|+|+|+++ .||.+|.+|+.|++|-|.+|.+. +.|.+++-.- =.++|+...++
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88888887 78888888888888888888877 5666654322 23455555553
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=4e-10 Score=115.96 Aligned_cols=61 Identities=38% Similarity=0.498 Sum_probs=34.2
Q ss_pred CccEEEccCccccccCccccCCCC-CCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 344 LLEKLELRFNQFTGILPISLGSLK-NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+..++.|+.|++++|+++..
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh
Confidence 46666666666653 343444443 6666666666655 3434455666666666666655543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.7e-11 Score=121.60 Aligned_cols=191 Identities=28% Similarity=0.382 Sum_probs=152.0
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
...+++.|++... +..+..+..|+.+.++.|.+..++. .+.++..|+.++++.|+++ ..|..++.++ |+.|-
T Consensus 78 ~~aDlsrNR~~el----p~~~~~f~~Le~liLy~n~~r~ip~--~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 78 VFADLSRNRFSEL----PEEACAFVSLESLILYHNCIRTIPE--AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhccccccccC----chHHHHHHHHHHHHHHhccceecch--hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 4456666777665 4566667778888888888888774 5667889999999999987 5777788777 89999
Q ss_pred ccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEc
Q 037325 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350 (598)
Q Consensus 271 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 350 (598)
+++|+++ .+|+.++..+.|..|+.+.|.+ ..+|..++.+.+|+.|.+.+|++....+ .+..++ |..||+
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~-El~~Lp-------Li~lDf 218 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSLP-------LIRLDF 218 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCCc-------eeeeec
Confidence 9999998 7888899889999999999985 6678889999999999999998876544 444665 999999
Q ss_pred cCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCC---CCEEeCcCCc
Q 037325 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL---LKELYLASNQ 402 (598)
Q Consensus 351 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~---L~~L~l~~n~ 402 (598)
+.|++. .+|..|..|+.|++|.|.+|.+. ..|..+...-+ .++|+..-|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999998 68999999999999999999988 55554433222 4567776663
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=4.3e-10 Score=98.98 Aligned_cols=127 Identities=26% Similarity=0.331 Sum_probs=39.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhcc-CCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIG-SLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++ .++ .+.. ++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~--------------------------L~ 64 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPG--------------------------LP 64 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T------------------------------T
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccC--------------------------hh
Confidence 3445567777777776632 2233 4566777777777666 332 2333 44
Q ss_pred CCcEEEcCCCCCCCCcccchHhh-hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCc---chhhhcCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVF-NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT---PHWLFNIT 264 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~ 264 (598)
+|+.|++++|.++... +.+ ..+++|++|++++|.+.+......+..+++|++|++.+|.++... ...+..+|
T Consensus 65 ~L~~L~L~~N~I~~i~----~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 65 RLKTLDLSNNRISSIS----EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp T--EEE--SS---S-C----HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred hhhhcccCCCCCCccc----cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 4555555555555442 223 346677777777776666555455556677777777777665321 12345566
Q ss_pred CCCEEEc
Q 037325 265 SLLCLDL 271 (598)
Q Consensus 265 ~L~~L~l 271 (598)
+|+.||-
T Consensus 141 ~Lk~LD~ 147 (175)
T PF14580_consen 141 SLKVLDG 147 (175)
T ss_dssp T-SEETT
T ss_pred hhheeCC
Confidence 6666654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.3e-10 Score=98.98 Aligned_cols=128 Identities=34% Similarity=0.354 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCcccc-CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLL-QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
+.++|+|.+ +.+... ..++ .+.+|+.|+|++|.++.. . .+..+++|++|++++|+++ .+
T Consensus 20 ~~~~L~L~~--------------n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I~-~i 79 (175)
T PF14580_consen 20 KLRELNLRG--------------NQISTI--ENLGATLDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRIS-SI 79 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-
T ss_pred ccccccccc--------------cccccc--cchhhhhcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCCC-cc
Confidence 568888988 565532 3455 588999999999999953 3 5678999999999999999 55
Q ss_pred chhc-cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCC
Q 037325 155 PQTL-GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224 (598)
Q Consensus 155 p~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~ 224 (598)
+..+ ..+++|++|++++|.+.... ....+..+++|++|++.+|++..........+..+|+|+.||-..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5444 46899999999999875443 346678899999999999999877655566777888888886543
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-11 Score=112.57 Aligned_cols=182 Identities=24% Similarity=0.190 Sum_probs=110.4
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEE
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 193 (598)
.|++||||+..++..++-..+.++.+|+.|.+.++++.+.+-..+++..+|+.|+++.|.-.......-.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58899999888876556666788889999999999998888888888889999998876543333333344555555555
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCc-CCCCCccEEEccCCC--CCC-CcchhhhcCCCCCEE
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPS-LNFASLQVLDLSNND--FNS-TTPHWLFNITSLLCL 269 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L 269 (598)
+++.+.+.... ..... .--++|+.|++++++ +.. .+..-..++++|..|
T Consensus 266 NlsWc~l~~~~---------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 266 NLSWCFLFTEK---------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred CchHhhccchh---------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 55555443221 11110 111456666666652 111 111223456777777
Q ss_pred EccCCc-ccccCCccccCCCCccEEECcCCCcCccccchh---hcCCCCCCEEecccccC
Q 037325 270 DLGSND-LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN---LGKLCNLRTMILSRNNI 325 (598)
Q Consensus 270 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---l~~l~~L~~L~l~~n~l 325 (598)
|+++|. ++......|.+++.|++|.++.|. +.+|.. +...|.|.+|++.++--
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY---DIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhc---CCChHHeeeeccCcceEEEEeccccC
Confidence 777664 332233345566777777777776 333433 34566777777766643
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=1.4e-09 Score=111.92 Aligned_cols=197 Identities=32% Similarity=0.441 Sum_probs=112.3
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCC-CCCEEEccCCCCCCCccChhhhcCCCCCcEEEc
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS-NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNL 195 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 195 (598)
.+++..+.+.. -+..+..++.++.|++.+|.++ .+|.....+. +|++|++++|.+.... ..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDL 170 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh---hhhhcccccccccc
Confidence 57777776642 2344455677888888888887 6666666664 7777777776554321 22566677777777
Q ss_pred CCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc
Q 037325 196 GGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND 275 (598)
Q Consensus 196 ~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 275 (598)
++|++.... ......+.|+.|++++|.+..++... .....|+++.+++|... ..+..+.++.++..+.+.+|+
T Consensus 171 ~~N~l~~l~----~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 171 SFNDLSDLP----KLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred CCchhhhhh----hhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 777766652 33335666666666666666665421 12234666666666422 233445555555555555555
Q ss_pred ccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccc
Q 037325 276 LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS 330 (598)
Q Consensus 276 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 330 (598)
+. ..+..++.+++++.|++++|.+ . .++. ++.+.+++.|+++++.+....+
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i-~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQI-S-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhccccccceeccccccc-c-cccc-ccccCccCEEeccCccccccch
Confidence 54 2244455555566666666652 2 1222 5555555555555555554443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=5.7e-10 Score=122.71 Aligned_cols=251 Identities=26% Similarity=0.267 Sum_probs=139.5
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG 186 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 186 (598)
..|..++.|++|||++|.--+ .+|..++++-+||+|+++++.++ .+|..++++.+|.+|++..+...... ......
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~ 640 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLE 640 (889)
T ss_pred HHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc--cchhhh
Confidence 347789999999999875433 59999999999999999999998 89999999999999999875432222 334556
Q ss_pred CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCcc----EEEccCCCCCCCcchhhhc
Q 037325 187 LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQ----VLDLSNNDFNSTTPHWLFN 262 (598)
Q Consensus 187 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~ 262 (598)
+++|++|.+........ ......+..+..|+.+.......... ..+..+..|. .+.+.++.. ...+..+..
T Consensus 641 L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~~~~---e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~ 715 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSVLLL---EDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGS 715 (889)
T ss_pred cccccEEEeeccccccc-hhhHHhhhcccchhhheeecchhHhH---hhhhhhHHHHHHhHhhhhccccc-ceeeccccc
Confidence 88899888877652222 11133444555555554433332000 1111222222 223222222 133444666
Q ss_pred CCCCCEEEccCCcccccCCccccC------CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCC
Q 037325 263 ITSLLCLDLGSNDLQGDIPDGFAS------LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 263 l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+.+|+.|.+.++............ ++++..+.+.++.. ...+.+....++|+.|.+..+.....+......+
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchhhccCcccEEEEecccccccCCCHHHHh
Confidence 777888888777765322211111 22333333333321 2223333445677777777776666555544444
Q ss_pred CCCCCCCCccEEEccCcccccc-CccccCCCCCCCEEEc
Q 037325 337 SECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVL 374 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l 374 (598)
. .+..+.+..+.+.+. .-...+.++++..+.+
T Consensus 794 ~------~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 794 L------ELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred h------hcccEEecccccccceeeecCCCCceeEeccc
Confidence 4 344444444444433 2223344444444333
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.4e-09 Score=78.54 Aligned_cols=61 Identities=39% Similarity=0.550 Sum_probs=44.7
Q ss_pred CCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCC
Q 037325 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (598)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577777777777744446777777788888887777766666777778888888877764
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=2.7e-10 Score=104.39 Aligned_cols=140 Identities=28% Similarity=0.288 Sum_probs=81.4
Q ss_pred ceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccCh
Q 037325 102 GGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.|..-..+.-...|+.+|||+|.|+ ++.+++.-+|+++.|++++|++. .+.. +..+++|++|||++|.......
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~G-- 346 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVG-- 346 (490)
T ss_pred CCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhh--
Confidence 3333344555677778888888777 56667677788888888888776 3333 6677777777777765432221
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCC
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFN 253 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 253 (598)
+-.++-+++.|.++.|.+.+. ..+.++-+|..|++.+|++........+++++-|+.+.+.+|.+.
T Consensus 347 -wh~KLGNIKtL~La~N~iE~L-----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 347 -WHLKLGNIKTLKLAQNKIETL-----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hHhhhcCEeeeehhhhhHhhh-----hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 223445556666666655443 344455555555555555555444444445555555555544443
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.1e-09 Score=100.49 Aligned_cols=212 Identities=22% Similarity=0.258 Sum_probs=128.1
Q ss_pred ceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC-CCCccC
Q 037325 102 GGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD-QSNQID 180 (598)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~-~~~~~~ 180 (598)
...+|-.+.-+++|+.+.+|.+.-.. +-+....-|-|+++.+.+..+. ..|..+ -...+ -|.....- ......
T Consensus 203 ~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~-~~~~l~-pe~~~--~D~~~~E~~t~~G~~ 276 (490)
T KOG1259|consen 203 PNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ-DVPSLL-PETIL--ADPSGSEPSTSNGSA 276 (490)
T ss_pred ccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc-cccccc-chhhh--cCccCCCCCccCCce
Confidence 34455567778889999888875442 2222233478889988877655 222211 11111 11111000 011111
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 260 (598)
...+...+.|+.+++++|.++.+. +++.-.|.++.|+++.|.+..+.. +..+++|+.||+++|.++ .+..|-
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred EEecchHhhhhhccccccchhhhh----hhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhH-hhhhhH
Confidence 223455567888888888877663 566677788888888887776643 445677888888888766 344455
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCccc
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 329 (598)
.++-++++|.++.|.+.. -..++.+-+|..||+++|++-.-.-...++++|.|+++.+.+|.+.+..
T Consensus 349 ~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 566777888888777642 2345566677777888877433333455677777777777777766543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=9.6e-09 Score=113.20 Aligned_cols=222 Identities=22% Similarity=0.263 Sum_probs=138.2
Q ss_pred cCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC
Q 037325 95 DDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 95 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 174 (598)
+++++.-.+.+|..++.+-+||||++++..+. .+|..+.+++.|.+|++.++.....+|.....+++||+|.+.....
T Consensus 577 DLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 577 DLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred ECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 33435666889999999999999999999999 6999999999999999999876656677777799999999987543
Q ss_pred CCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCC----EEEcCCCCCCCCCCCCCcCCCCCccEEEccCC
Q 037325 175 QSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFV----ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN 250 (598)
Q Consensus 175 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~----~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n 250 (598)
.........+.++.+|+.+....... .. ...+..+++|. .+.+.++...... .....+.+|+.|.+.++
T Consensus 655 ~~~~~~l~el~~Le~L~~ls~~~~s~-~~----~e~l~~~~~L~~~~~~l~~~~~~~~~~~--~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENLSITISSV-LL----LEDLLGMTRLRSLLQSLSIEGCSKRTLI--SSLGSLGNLEELSILDC 727 (889)
T ss_pred ccchhhHHhhhcccchhhheeecchh-Hh----HhhhhhhHHHHHHhHhhhhcccccceee--cccccccCcceEEEEcC
Confidence 33333334456666666666543332 11 12233333333 3333333322222 34567788999999988
Q ss_pred CCCCCcchhhhc------CCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccccc
Q 037325 251 DFNSTTPHWLFN------ITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNN 324 (598)
Q Consensus 251 ~l~~~~~~~l~~------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 324 (598)
.+......+... ++++..+.+.++... ..+.+....++|+.|.+..+.... .+......+..++.+.+..+.
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e-~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLE-DIIPKLKALLELKELILPFNK 805 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccc-cCCCHHHHhhhcccEEecccc
Confidence 876433322211 223333333333222 222333467899999999998444 444444455556554455444
Q ss_pred CCc
Q 037325 325 ISS 327 (598)
Q Consensus 325 l~~ 327 (598)
+.+
T Consensus 806 ~~~ 808 (889)
T KOG4658|consen 806 LEG 808 (889)
T ss_pred ccc
Confidence 443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.1e-08 Score=73.87 Aligned_cols=61 Identities=41% Similarity=0.533 Sum_probs=52.5
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
++|++|++++|+++...+..+.. +++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~----------l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN----------LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT----------GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcC----------CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999443345554 89999999999999977788999999999999999985
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=2.5e-08 Score=65.67 Aligned_cols=38 Identities=63% Similarity=1.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCCCcccEEec
Q 037325 34 EAERKALLQFKQSLR-DPSGQLSSWV-G--EDCCSWSGVSCN 71 (598)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~ 71 (598)
++|++||++||+++. +|.+.+.+|. . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 679999999999997 5668899994 3 699999999995
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-09 Score=111.65 Aligned_cols=129 Identities=28% Similarity=0.279 Sum_probs=66.4
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.+..++.+++..|.+.. +-..+..+++|++|++..|++. .+...+..+++|++|++++|.+..... +..++.|
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc----hhhccch
Confidence 45566666666666652 2333556677777777777766 333335556666666666655433222 4444445
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCC
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDF 252 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l 252 (598)
+.|++.+|.+.... .+..++.|+.+++++|.+..+.... ...+.+++.+.+.+|.+
T Consensus 143 ~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 143 KELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 55555555555442 2333444555555555444443210 22334444444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.7e-10 Score=101.77 Aligned_cols=166 Identities=22% Similarity=0.164 Sum_probs=104.1
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCC-CCCc-ccchhccCCCCCCEEEccCCCCCCCccChhhh
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGS-FFSG-TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWL 184 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 184 (598)
.-+..|.+|+.|.|.++++.+. +-..+.+..+|+.|+++.+ .++. ...--+.+|+.|..|++++|...........-
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 3567899999999999999986 8888999999999999986 4542 12234678999999999999875544333223
Q ss_pred cCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCC
Q 037325 185 SGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNIT 264 (598)
Q Consensus 185 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 264 (598)
.--++|+.|+++++.-.-....+..-...+++|.+|++++|. .++......+.+++
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------------~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------------MLKNDCFQEFFKFN 338 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------------ccCchHHHHHHhcc
Confidence 334677888887764322211112223344555555554442 23333334455566
Q ss_pred CCCEEEccCCcccccCCc---cccCCCCccEEECcCCC
Q 037325 265 SLLCLDLGSNDLQGDIPD---GFASLNSLQELDLSGNS 299 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~ 299 (598)
.|++|.++.|.. .+|. .+...|+|.+|++.++-
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 666666666542 2332 23456677777777763
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=6.5e-09 Score=107.16 Aligned_cols=86 Identities=28% Similarity=0.280 Sum_probs=55.1
Q ss_pred CcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccc---cchh-
Q 037325 490 VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGS---TPES- 565 (598)
Q Consensus 490 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~---~p~~- 565 (598)
|+.+++++|++. .++..+.. +..+..|++.+|.+...- .+...+.+..+....|.+... ....
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~----------~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLEN----------LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred HHHHhcccCccc-cccccccc----------cccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence 778888888876 23222222 677888888888876321 244556677777777776522 1121
Q ss_pred ccCCCCCCEEEccCCCCcccCCc
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
......++.+.+.+|++....+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccccccccccccccCcccccccc
Confidence 45667888888888887765553
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=2e-09 Score=103.35 Aligned_cols=284 Identities=19% Similarity=0.123 Sum_probs=123.6
Q ss_pred CCCEEeCCCCCCCCC-CcchhccCCCCCCEEECcCCC-CCcccchhc-cCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 114 DLEYLDLSMNNFTGF-QVPEFIGSLKELRYLNLSGSF-FSGTIPQTL-GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.|+.|.++++.-.+. .+-.+..+++++++|++.+|. ++...-..+ ..+++|++|++..|.............++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455555555432211 222333445555555555553 221111112 34555555555554332222212233455556
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCC-CCCcCCCCCccEEEccCC-CCCCCcchh-hhcCCCCC
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL-SFPSLNFASLQVLDLSNN-DFNSTTPHW-LFNITSLL 267 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L~ 267 (598)
++++++.+...... .+...+.++..++.+...+|.-.+... ......+..+.++++..| .+++..-.. -..+..|+
T Consensus 219 ~~lNlSwc~qi~~~-gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN-GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcC-cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 66665555322110 012233444445555444442211100 011112233444444444 233222111 12345566
Q ss_pred EEEccCCcccccCC-ccc-cCCCCccEEECcCCCcCccccchhhc-CCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIP-DGF-ASLNSLQELDLSGNSFLGGQLSRNLG-KLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 268 ~L~l~~n~l~~~~~-~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
.++.+++...+..+ ..+ .+..+|+.+-++.|+-++..-...++ +++.|+.+++.++...... .+..+. .+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--RNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--cCCch
Confidence 66666554322111 112 34566666666666533322222222 4556666666665443222 122211 22235
Q ss_pred ccEEEccCccc-ccc----CccccCCCCCCCEEEccCCcCC-ccchhhccCCCCCCEEeCcCCc
Q 037325 345 LEKLELRFNQF-TGI----LPISLGSLKNLRHLVLWQNSFL-GSIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 345 L~~L~Ls~n~l-~~~----~~~~l~~l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 402 (598)
|+.+.++++.. ++. +...-..+..|+.+.+++++.. +..-+.+..+++|+.+++-+++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66666666533 211 0111234556777777777543 2334456667777777777664
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=7.1e-08 Score=87.57 Aligned_cols=229 Identities=20% Similarity=0.151 Sum_probs=114.3
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CcchhccCCCCCCEEECcCCCC---CcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 109 LLQLKDLEYLDLSMNNFTGF---QVPEFIGSLKELRYLNLSGSFF---SGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
+..+..+..++||+|.|... .+...+.+-.+|+..+++.-.. ...+|..+.- -..
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~-------------------Ll~ 86 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM-------------------LLK 86 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH-------------------HHH
Confidence 34467777777777776543 1222344456666666654321 1223332210 012
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcc-cchHhhhcCCCCCEEEcCCCCCCCCCCC------------CCcCCCCCccEEEccC
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGA-YWLEVFNKLHSFVELHLPNCNLPSLPLS------------FPSLNFASLQVLDLSN 249 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~------------~~~~~l~~L~~L~L~~ 249 (598)
.+-+|++|+.+++++|-+....+ .+.+.+.+-+.|++|.+++|.+..+... .-...-|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 24445555555555555443321 1233445556666666666655443221 1122346788888888
Q ss_pred CCCCCCcch----hhhcCCCCCEEEccCCcccccCC-----ccccCCCCccEEECcCCCcCc---cccchhhcCCCCCCE
Q 037325 250 NDFNSTTPH----WLFNITSLLCLDLGSNDLQGDIP-----DGFASLNSLQELDLSGNSFLG---GQLSRNLGKLCNLRT 317 (598)
Q Consensus 250 n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~ 317 (598)
|++...... .+..-.+|+.+.+..|.+.-... ..+..+.+|+.|+++.|.+.. ..+...+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 877543221 12223578888888776642211 122346677777777776321 122344456666777
Q ss_pred EecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 318 MILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 318 L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
|.+.+|-++......+-....-...++|..|...+|.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 777777666555432211100011124555555555443
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=2.9e-08 Score=95.58 Aligned_cols=301 Identities=19% Similarity=0.117 Sum_probs=189.5
Q ss_pred CCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCC-CCCCCcccchHhhhcC
Q 037325 138 KELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGA-DLSKAGAYWLEVFNKL 214 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l 214 (598)
..|+.|.+++++=.+ .+-.....++++++|.+.+|...........-..+++|+++++..+ .+++... ......+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--k~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--KYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--HHHHHhh
Confidence 468888999886443 2333446899999999999875444333445577899999999984 3444331 2345679
Q ss_pred CCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh----hcCCCCCEEEccCCc-ccccCCccc-cCC
Q 037325 215 HSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL----FNITSLLCLDLGSND-LQGDIPDGF-ASL 287 (598)
Q Consensus 215 ~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~~~~l-~~l 287 (598)
++|++|+++.| .+++.........+..++.+.+.+|.=. ..+.+ +.+..+.++++..|. +++...-.+ ..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 99999999999 4555444344455666777777776321 11222 234567777766663 332111111 357
Q ss_pred CCccEEECcCCCcCccccchhh-cCCCCCCEEecccccC-CcccchhhhCCCCCCCCCCccEEEccCcccc--ccCcccc
Q 037325 288 NSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNI-SSEVSDFLDGLSECTNSILLEKLELRFNQFT--GILPISL 363 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~~l 363 (598)
..|+.++.+++...+...-..+ .++++|+.+.+.+|+. +......++ .++..|+.+++..+... +.+...-
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-----rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-----RNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----cCChhhhhhcccccceehhhhHhhhc
Confidence 7899999999874333333333 4678999999998863 322222221 22337999998887432 2233233
Q ss_pred CCCCCCCEEEccCCcCCccc-----hhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCcc-Cccccch
Q 037325 364 GSLKNLRHLVLWQNSFLGSI-----PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR-ISDTISD 437 (598)
Q Consensus 364 ~~l~~L~~L~ls~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~ 437 (598)
.+++.|+.+.+++|...... ...-..+..|+.+.+++++.+. ....+.+..+++|+.+++-+++ ++.....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---DATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---HHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 56889999999988543221 1222456778899999987653 3345678889999999999887 5555555
Q ss_pred HHHhcCCCCCEEE
Q 037325 438 WFWQLSLTLDELD 450 (598)
Q Consensus 438 ~~~~~~~~L~~L~ 450 (598)
.+...+|+++..-
T Consensus 446 ~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 446 RFATHLPNIKVHA 458 (483)
T ss_pred HHHhhCccceehh
Confidence 5555566655443
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1e-07 Score=87.78 Aligned_cols=42 Identities=26% Similarity=0.170 Sum_probs=17.8
Q ss_pred CCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCC
Q 037325 162 SNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKA 203 (598)
Q Consensus 162 ~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 203 (598)
+.++.+||.+|.++........+.+++.|+.|+++.|++...
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 334444444443333333333344444444444444444433
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=1.2e-07 Score=86.05 Aligned_cols=193 Identities=29% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCCCCccEEEccCCCCCCCcch----hhhcCCCCCEEEccCCccccc----CCc---------cccCCCCccEEECcCCC
Q 037325 237 LNFASLQVLDLSNNDFNSTTPH----WLFNITSLLCLDLGSNDLQGD----IPD---------GFASLNSLQELDLSGNS 299 (598)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~~---------~l~~l~~L~~L~l~~n~ 299 (598)
.+|++|+..+++.|.+....|+ .+++-+.|++|.+.+|.+.-. +.. ....-|.|+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3455555666666655544443 344556777777777765311 111 12234678888888877
Q ss_pred cCccccc---hhhcCCCCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCcccccc----CccccCCCCCCC
Q 037325 300 FLGGQLS---RNLGKLCNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLR 370 (598)
Q Consensus 300 ~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~ 370 (598)
+..+... ..+..-.+|+.+.+..|.+.......+ .++.. +.+|+.||+.+|.++-. +...+..++.|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y---~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY---SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH---hCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 5333221 123333577888888877765543322 11111 11688888888877633 233445566678
Q ss_pred EEEccCCcCCccchhhc------cCCCCCCEEeCcCCcCCcccCCCch-hh--hcCCCCCCEEEccCccCc
Q 037325 371 HLVLWQNSFLGSIPPSI------GNLTLLKELYLASNQMNGQKISDSY-QH--LKNQTELRTLVLNKARIS 432 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~~~-~~--l~~~~~L~~L~l~~n~l~ 432 (598)
.|.+..|-+...-...+ ...|+|..|...+|.+.+.++...+ .. -.+.|-|..|.+.+|++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 88888776654332221 2346777777777776654422211 11 123455555666666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=7.2e-09 Score=106.03 Aligned_cols=179 Identities=23% Similarity=0.255 Sum_probs=116.4
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhc----cC------CCCCCEEEccCCCCC
Q 037325 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTL----GN------LSNLLYLDLNNFLDQ 175 (598)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~------l~~L~~L~L~~n~~~ 175 (598)
|-.|..++.|+.|.|.++.+.. .-....--.+|++|.-++ .+. .+-..| +. .-+|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567889999999999988762 211111113455543322 221 111111 11 124666666666554
Q ss_pred CCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC
Q 037325 176 SNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 176 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
.... .+.-++.+++|+|++|++++. +.+..|+.|++||++.|.+..++. .....+. |+.|.+++|.++.
T Consensus 178 ~mD~---SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~vp~-l~~~gc~-L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 178 LMDE---SLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRHVPQ-LSMVGCK-LQLLNLRNNALTT- 246 (1096)
T ss_pred hHHH---HHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhccccc-cchhhhh-heeeeecccHHHh-
Confidence 3332 356677888888888888875 478888999999999998888876 3333444 9999999998763
Q ss_pred cchhhhcCCCCCEEEccCCcccccCC-ccccCCCCccEEECcCCCc
Q 037325 256 TPHWLFNITSLLCLDLGSNDLQGDIP-DGFASLNSLQELDLSGNSF 300 (598)
Q Consensus 256 ~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~ 300 (598)
...+.++++|+.||+++|-+.+.-. ..+..+..|+.|.|.+|++
T Consensus 247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 2447788899999999987764321 2244567788889999885
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.5e-07 Score=84.28 Aligned_cols=115 Identities=25% Similarity=0.293 Sum_probs=57.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhc
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLS 185 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 185 (598)
++..+.++.|-+.++.+.....-..+ ...+.++.|||.+|.++. .+..-+.++|.|++|+++.|+......... .
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~ 118 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--L 118 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--c
Confidence 33344444455555544432111112 234556666666666552 333344566666666666655432222111 2
Q ss_pred CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCC
Q 037325 186 GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227 (598)
Q Consensus 186 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 227 (598)
..++|+.|-+.+..+..... ...+..+|.+++|+++.|.+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~--~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQS--TSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cccceEEEEEcCCCCChhhh--hhhhhcchhhhhhhhccchh
Confidence 34566666666665543321 34556677777777777743
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.1e-07 Score=77.37 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=68.3
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
+.++.|++++|.++ .+|.++.. ++.|+.|+++.|.+. ..|+.+..+.++-.||..+|.+. .+|..+-
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aa----------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAA----------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhh----------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 34566667777776 67877766 889999999999998 77888888888889999999887 6666554
Q ss_pred CCCCCCEEEccCCCCcccCCcCccCc
Q 037325 568 SLRTVKFLVLRNNYLSGKLPLSLKNC 593 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P~~~~~~ 593 (598)
--+..-..++.++++.+.-|..++.+
T Consensus 144 ~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 144 YSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred ccccHHHHHhcCCcccccCccccccc
Confidence 44445555667788887666655443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=2.8e-08 Score=101.80 Aligned_cols=129 Identities=26% Similarity=0.237 Sum_probs=97.6
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
-.|..-+.++|++. .+...+.-++.|+.|+|++|++. ... .+..|++|++|||++|.+...+.. ...++. |+.
T Consensus 164 n~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l--~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQL--SMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcccccc--chhhhh-hee
Confidence 45667788888887 46677777888999999999887 333 678888999999988876544331 133444 888
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCC
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFN 253 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 253 (598)
|++++|.++.. ..+.++.+|+.||+++|-+.+...-..+..+..|++|.|.+|.+-
T Consensus 237 L~lrnN~l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 89998888765 467888889999999988877665566677788888888888764
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.2e-06 Score=56.48 Aligned_cols=36 Identities=39% Similarity=0.571 Sum_probs=19.7
Q ss_pred CCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 523 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 45555556666666666666555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.5e-06 Score=56.21 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=28.6
Q ss_pred CCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 546 SFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 546 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 57777888888888888888887
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=2.8e-06 Score=91.53 Aligned_cols=157 Identities=21% Similarity=0.300 Sum_probs=99.9
Q ss_pred CCccEEECcCCCcCccccchhhc-CCCCCCEEecccccCCccc-chhhhCCCCCCCCCCccEEEccCccccccCccccCC
Q 037325 288 NSLQELDLSGNSFLGGQLSRNLG-KLCNLRTMILSRNNISSEV-SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS 365 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 365 (598)
.+|++|++++...+...-+..++ .+|+|+.|.+.+-.+...- ......++ +|..||+|+++++.. ..++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp------NL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP------NLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC------ccceeecCCCCccCc--HHHhc
Confidence 46888888886644433343343 5688888888776554322 12223333 788888888887743 56778
Q ss_pred CCCCCEEEccCCcCCc-cchhhccCCCCCCEEeCcCCcCCccc--CCCchhhhcCCCCCCEEEccCccCccccchHHHhc
Q 037325 366 LKNLRHLVLWQNSFLG-SIPPSIGNLTLLKELYLASNQMNGQK--ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL 442 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 442 (598)
+++|+.|.+.+=.+.. ..-..+.++++|+.||+|........ +..-.+.-..+|+|+.||.++..+.+...+.+...
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 8888888887766653 22345778888888888876544322 01112344557888888888888877776666655
Q ss_pred CCCCCEEEcc
Q 037325 443 SLTLDELDVA 452 (598)
Q Consensus 443 ~~~L~~L~ls 452 (598)
-++|+.+-+-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5555555433
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=1.4e-06 Score=71.05 Aligned_cols=88 Identities=25% Similarity=0.406 Sum_probs=75.2
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
.|+..+|++|.|. ..|..+.. ..+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|.-+..
T Consensus 54 el~~i~ls~N~fk-~fp~kft~---------kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTI---------KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred eEEEEecccchhh-hCCHHHhh---------ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH
Confidence 5677888888887 67777665 2568999999999999 89999999999999999999998 67888888
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+.++-.|+..+|.+. +||..
T Consensus 122 L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred HHhHHHhcCCCCccc-cCcHH
Confidence 999999999999887 66654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=8.8e-05 Score=73.82 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=43.1
Q ss_pred cCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCcc-CccccchHHHh
Q 037325 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR-ISDTISDWFWQ 441 (598)
Q Consensus 363 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~ 441 (598)
+..+++++.|++++|.++ .+|. -.++|++|.+++|.--... |.. + .++|+.|++++|. +. .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsL-P~~---L--P~nLe~L~Ls~Cs~L~-sL------ 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTL-PGS---I--PEGLEKLTVCHCPEIS-GL------ 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccC-Cch---h--hhhhhheEccCccccc-cc------
Confidence 344678888888888776 4451 2346888888775322222 321 1 2467777777763 32 12
Q ss_pred cCCCCCEEEccCCc
Q 037325 442 LSLTLDELDVAYNE 455 (598)
Q Consensus 442 ~~~~L~~L~ls~n~ 455 (598)
...|+.|+++.+.
T Consensus 111 -P~sLe~L~L~~n~ 123 (426)
T PRK15386 111 -PESVRSLEIKGSA 123 (426)
T ss_pred -ccccceEEeCCCC
Confidence 3356666665544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=1.4e-05 Score=86.21 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCCCCEEECcCCCCC-cccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 137 LKELRYLNLSGSFFS-GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 137 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
+|.|+.|.+++-.+. +..-....++++|..||+++++.... ..++.+++|++|.+.+-.+..... ...+..++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~--l~~LF~L~ 220 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQD--LIDLFNLK 220 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhh--HHHHhccc
Confidence 444555544443332 11122223444455555544433222 224444455554444444433211 23444555
Q ss_pred CCCEEEcCCCCCCCCCC-----CCCcCCCCCccEEEccCCCCCCCcchhh-hcCCCCCEEE
Q 037325 216 SFVELHLPNCNLPSLPL-----SFPSLNFASLQVLDLSNNDFNSTTPHWL-FNITSLLCLD 270 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 270 (598)
+|+.||++......... ...-..+|+|+.||.++..+...+-+.+ ...++|+.+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 55555555543333220 0112235677777777666655443332 2334444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=5.3e-05 Score=66.40 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=50.1
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc---hhh
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP---HWL 260 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l 260 (598)
|..++.|..|.+++|+++.+. +..-..+++|+.|.+.+|.+..+.....+..+++|++|.+-+|.++..-- -.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~---p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID---PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeec---cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 555666777777777777665 23333456677777777776666554555666666666666665543211 123
Q ss_pred hcCCCCCEEEccC
Q 037325 261 FNITSLLCLDLGS 273 (598)
Q Consensus 261 ~~l~~L~~L~l~~ 273 (598)
..+|+|+.||+..
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3445555554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00018 Score=71.59 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccC
Q 037325 310 GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389 (598)
Q Consensus 310 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 389 (598)
..+.+++.|++++|.+... | .++. +|++|.+++|.-...+|..+ .++|+.|++++|.....+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P----~LP~-----sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P----VLPN-----ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C----CCCC-----CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc----
Confidence 3456677777777655432 2 1221 57777776643333444433 24666666666632223332
Q ss_pred CCCCCEEeCcCCc
Q 037325 390 LTLLKELYLASNQ 402 (598)
Q Consensus 390 l~~L~~L~l~~n~ 402 (598)
.|+.|++..+.
T Consensus 113 --sLe~L~L~~n~ 123 (426)
T PRK15386 113 --SVRSLEIKGSA 123 (426)
T ss_pred --ccceEEeCCCC
Confidence 35555555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.59 E-value=3e-05 Score=70.96 Aligned_cols=118 Identities=22% Similarity=0.191 Sum_probs=69.6
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCC--CCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGS--FFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 105 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
+......+..|+.|++.+..++.. ..+-.+++|++|.++.| ++++.++.....+++|++|++++|++.. .....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccc
Confidence 334444556666666666665532 23345677777778777 5555566656666777777777776654 22233
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCC
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 226 (598)
.+..+.+|..|++.+|..+.....-...|.-+++|++|+-.+..
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 45566666677776666554433323455566666666555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00017 Score=63.32 Aligned_cols=87 Identities=25% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
.....+||++|.+... ..+..++.|.+|.+.+|+|+..-|.--..+++|++|.+.+|.+... .+...+..+++|++
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccce
Confidence 4556778888877632 3456778888888888888855454444566777777777654221 11222445555555
Q ss_pred EEcCCCCCCCC
Q 037325 193 FNLGGADLSKA 203 (598)
Q Consensus 193 L~l~~n~~~~~ 203 (598)
|.+-+|++...
T Consensus 118 Ltll~Npv~~k 128 (233)
T KOG1644|consen 118 LTLLGNPVEHK 128 (233)
T ss_pred eeecCCchhcc
Confidence 55555554433
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.13 E-value=8.8e-05 Score=78.71 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=6.6
Q ss_pred cCCCCCEEEccCCc
Q 037325 262 NITSLLCLDLGSND 275 (598)
Q Consensus 262 ~l~~L~~L~l~~n~ 275 (598)
.++.|+.|+++.+.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34445555555443
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.80 E-value=8.9e-06 Score=83.96 Aligned_cols=233 Identities=21% Similarity=0.169 Sum_probs=109.7
Q ss_pred CccEEEccCcccccc----CccccCCCCC-CCEEEccCCcCCcc----chhhccCC-CCCCEEeCcCCcCCcccCCCchh
Q 037325 344 LLEKLELRFNQFTGI----LPISLGSLKN-LRHLVLWQNSFLGS----IPPSIGNL-TLLKELYLASNQMNGQKISDSYQ 413 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~ls~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~ 413 (598)
++++|++++|.++.. +...+...+. +..+++..|++.+. ....+..+ +.++.++++.|.++.........
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 566666666655422 1122333344 55577777766533 22234444 56677777777776555333345
Q ss_pred hhcCCCCCCEEEccCccCccccchHHHhc---CCCCCEEEccCCcCcccCCCCccc-----C-CCCEEEcccCcCccc--
Q 037325 414 HLKNQTELRTLVLNKARISDTISDWFWQL---SLTLDELDVAYNELRGRVPNSLGF-----N-FPAKVDLSFNNFEGR-- 482 (598)
Q Consensus 414 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~ls~n~~~~~~p~~~~~-----~-~L~~l~ls~n~l~~~-- 482 (598)
.+..++.++.+.+++|.+.+......... ...+.++-+.++......+..... . .......+++...+.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGL 364 (478)
T ss_pred HHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHH
Confidence 55666677777777777665444332221 122333333332221111111100 0 112222333332211
Q ss_pred ------CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc-----cCCCCCCEE
Q 037325 483 ------LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF-----SNISFLYIL 551 (598)
Q Consensus 483 ------~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L 551 (598)
....-+.+..+++..+.+.+..-..+.. .+.....+.+++++.|.....-+..+ .+. .++.+
T Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~------~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~ 437 (478)
T KOG4308|consen 365 ALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAA------QLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKAL 437 (478)
T ss_pred HHHhhhhcccCcccchhhhhccccccHHHHHhhh------hhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhh
Confidence 1111223556666666554432222211 12335677777777776654433222 234 77777
Q ss_pred ECCCCcCccccchhcc----CCCCCCEEEccCCCCc
Q 037325 552 DMSNNSLSGSTPESIG----SLRTVKFLVLRNNYLS 583 (598)
Q Consensus 552 ~ls~N~l~~~~p~~l~----~l~~L~~L~l~~n~l~ 583 (598)
+++.|.++..-..... .=+......+..|.+.
T Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 438 RLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred hhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 8888876644333332 2244455555555544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0039 Score=52.57 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|..+++|+.+.+.++ +..+.. ..+..+++++.+.+.. .+.......+..+++|+.+.+..+ +.......+.++ +
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccce-eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 4444545555555442 333333 3444454555555543 222222333444555555555443 222222334444 5
Q ss_pred ccEEECcC
Q 037325 290 LQELDLSG 297 (598)
Q Consensus 290 L~~L~l~~ 297 (598)
|+.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 55555544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00089 Score=61.52 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=16.8
Q ss_pred cCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCC
Q 037325 135 GSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNF 172 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 172 (598)
..+..|+.|++.+..++. + ..+-.+++|++|.++.|
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDN 75 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCC
Confidence 344556666655555441 1 12334445555555444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0058 Score=51.55 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=27.3
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|..+++++.+.+.+ .+..+.. ..+..+++|+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGD-NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-T-TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred eeecccccccccccc-ccccccc-ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 344444555555543 3333332 34445666666666544 333333445555 666666654 222223334555544
Q ss_pred c
Q 037325 290 L 290 (598)
Q Consensus 290 L 290 (598)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 4
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00087 Score=71.07 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=71.8
Q ss_pred cCCCCCCEEeCCCCC-CCCCCcchhccCCCCCCEEECcCC-CCCccc----chhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 110 LQLKDLEYLDLSMNN-FTGFQVPEFIGSLKELRYLNLSGS-FFSGTI----PQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
..++.|+.|.+..+. +....+-.....+++|+.|+++++ ...... ......+++|+.|+++++...........
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888763 332213344566788888888873 221111 12334568888888888764222222222
Q ss_pred hcCCCCCcEEEcCCCC-CCCCcccchHhhhcCCCCCEEEcCCCCCC
Q 037325 184 LSGLSSLVYFNLGGAD-LSKAGAYWLEVFNKLHSFVELHLPNCNLP 228 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 228 (598)
...+++|++|.+.++. +++.. +......++.|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~g--l~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEG--LVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhH--HHHHHHhcCcccEEeeecCccc
Confidence 3347888888877776 45443 2445567888899988888543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00014 Score=66.92 Aligned_cols=79 Identities=27% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc-hhhhcCCCCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP-HWLFNITSLL 267 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 267 (598)
+.+.|++.++.++++ ....+++.|+.|.|+-|.++.+. .+..|++|++|.|..|.|..... ..+.++++|+
T Consensus 20 ~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 334444444444433 23344444444444444444432 23344444444444444432111 1233444444
Q ss_pred EEEccCCc
Q 037325 268 CLDLGSND 275 (598)
Q Consensus 268 ~L~l~~n~ 275 (598)
.|+|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 44444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0012 Score=36.06 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=9.2
Q ss_pred CCEEECCCCcCccccchhcc
Q 037325 548 LYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~ 567 (598)
|++||+++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444433
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.31 E-value=2.2e-05 Score=81.09 Aligned_cols=308 Identities=24% Similarity=0.224 Sum_probs=159.7
Q ss_pred CCEEEccCCcccccCCc----cccCCCCccEEECcCCCcCccccchh----hcCC-CCCCEEecccccCCcccchhhhCC
Q 037325 266 LLCLDLGSNDLQGDIPD----GFASLNSLQELDLSGNSFLGGQLSRN----LGKL-CNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+..+.+.+|.+...... .+...+.|+.|++++|.+ ++.-... +... +.++.|++..|.++......+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 67778888877654332 345567788888888873 3222111 1121 346667777777766554332211
Q ss_pred CCCCCCCCccEEEccCcccccc----CccccC----CCCCCCEEEccCCcCCccch----hhccCCCC-CCEEeCcCCcC
Q 037325 337 SECTNSILLEKLELRFNQFTGI----LPISLG----SLKNLRHLVLWQNSFLGSIP----PSIGNLTL-LKELYLASNQM 403 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~----~l~~L~~L~ls~n~l~~~~~----~~l~~l~~-L~~L~l~~n~l 403 (598)
-. ....++.++++.|.+... ++..+. ...+++.|.+.+|.++.... ..+...+. +..+++.+|.+
T Consensus 168 L~--~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LE--KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred Hh--cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 10 012677777777765311 222222 35567777777776653221 22344444 55677777776
Q ss_pred CcccCCCchhhhcCC-CCCCEEEccCccCccccchHHHh---cCCCCCEEEccCCcCcccCCCCcc-----cCCCCEEEc
Q 037325 404 NGQKISDSYQHLKNQ-TELRTLVLNKARISDTISDWFWQ---LSLTLDELDVAYNELRGRVPNSLG-----FNFPAKVDL 474 (598)
Q Consensus 404 ~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~p~~~~-----~~~L~~l~l 474 (598)
.+..+......+... ..++++++..|.+++........ .++.++++.+++|.+......... ...+..+.+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 544222222334444 56677777777776655443322 244667777777766532111110 002222222
Q ss_pred ccCcCcccCCCC--------CcCCcEEEccCCcccccCCchhhcccCCCCCcc-ccCCCCeEeCcCCccccc----cchh
Q 037325 475 SFNNFEGRLLLW--------SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLG-NLKQLITLVISNNNLSGE----IPLL 541 (598)
Q Consensus 475 s~n~l~~~~~~~--------~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~ 541 (598)
.++.....-+.. -..+.....++++..+..-..+.. ... .-..+..+++..+.+.+. ++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 399 (478)
T KOG4308|consen 326 GGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVL------AKSNPKSELLRLSLNSQVIEGRGALRLAAQ 399 (478)
T ss_pred cccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhh------hhcccCcccchhhhhccccccHHHHHhhhh
Confidence 222211100000 012223334444433222111111 111 123366677777766654 5666
Q ss_pred ccCCCCCCEEECCCCcCccccchhc-----cCCCCCCEEEccCCCCc
Q 037325 542 FSNISFLYILDMSNNSLSGSTPESI-----GSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 542 ~~~l~~L~~L~ls~N~l~~~~p~~l-----~~l~~L~~L~l~~n~l~ 583 (598)
+.....+++++++.|......+..+ .+. .++.++++.|+++
T Consensus 400 ~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 400 LASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT 445 (478)
T ss_pred hhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence 7788999999999997665555443 344 8899999999876
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00015 Score=66.67 Aligned_cols=82 Identities=22% Similarity=0.139 Sum_probs=47.7
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch-----
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH----- 258 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 258 (598)
+.+++.|++|.|+-|.++.. +.+..|++|++|.|..|.|.++....-+.++++|+.|.|..|.-.+..+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 44555555555555555543 34555666666666666665554445555667777777777655544332
Q ss_pred hhhcCCCCCEEE
Q 037325 259 WLFNITSLLCLD 270 (598)
Q Consensus 259 ~l~~l~~L~~L~ 270 (598)
.+.-+|+|++||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 345567777775
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.17 E-value=0.0021 Score=35.04 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=9.5
Q ss_pred CCEEEccCCCCcccCCcCccC
Q 037325 572 VKFLVLRNNYLSGKLPLSLKN 592 (598)
Q Consensus 572 L~~L~l~~n~l~g~~P~~~~~ 592 (598)
|++||+++|+++ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 444555555544 44444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.97 E-value=0.036 Score=27.94 Aligned_cols=11 Identities=64% Similarity=0.809 Sum_probs=3.6
Q ss_pred CCEEECCCCcC
Q 037325 548 LYILDMSNNSL 558 (598)
Q Consensus 548 L~~L~ls~N~l 558 (598)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.019 Score=50.83 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc-chhhcc-CCCCCCEEeCcCC-cCCcccCCCchhhhcCCCC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS-IPPSIG-NLTLLKELYLASN-QMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~ 420 (598)
.++.+|-++..+..+.-..+..++.++.|.+.+|.-.+. --+.++ -.++|+.|++++| +|| ...+.++..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT----~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT----DGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec----hhHHHHHHHhhh
Confidence 477888888877777667777778888888887754322 222232 2367788888877 455 334556677777
Q ss_pred CCEEEccCc
Q 037325 421 LRTLVLNKA 429 (598)
Q Consensus 421 L~~L~l~~n 429 (598)
|+.|.+.+-
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 777766653
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.07 E-value=0.057 Score=27.19 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=11.1
Q ss_pred CCCCEEEccCCCCcccCC
Q 037325 570 RTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P 587 (598)
++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 47999999999987 565
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=0.021 Score=50.59 Aligned_cols=67 Identities=30% Similarity=0.258 Sum_probs=38.5
Q ss_pred hHhhhcCCCCCEEEcCCCCC-CCCCCCCCcCCCCCccEEEccCC-CCCCCcchhhhcCCCCCEEEccCC
Q 037325 208 LEVFNKLHSFVELHLPNCNL-PSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWLFNITSLLCLDLGSN 274 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n 274 (598)
.+.+..++.++.|.+.+|.- .+......-.-.++|+.|++++| +|+.....++.++++|+.|.+.+-
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 34445555555555555522 11111011112368888888877 677777777778888888777653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.10 E-value=0.0036 Score=56.37 Aligned_cols=87 Identities=21% Similarity=0.106 Sum_probs=59.7
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
...+.||++.|++. ..-..+ +.++.+..||++.|.+. ..|..++....+..+++..|..+ ..|.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~----------s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNF----------SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ceeeeehhhhhHHH-hhccch----------HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 45566677777654 222222 22667777888888777 67777777777777888777777 6777888
Q ss_pred CCCCCCEEEccCCCCcccCC
Q 037325 568 SLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P 587 (598)
..+.++++++.+|++...+-
T Consensus 109 k~~~~k~~e~k~~~~~~~~~ 128 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFRKLF 128 (326)
T ss_pred ccCCcchhhhccCcchHHHH
Confidence 88888888888887664433
No 81
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=91.21 E-value=1.2 Score=44.91 Aligned_cols=114 Identities=18% Similarity=0.044 Sum_probs=58.5
Q ss_pred CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh-hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE-WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
-+.+++++++.|.+....|..+..-..= +.++.|.......... .-..-..+.+++++.|...+.++........-.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 4567788888887776666555321110 4444443322211111 112223567788888877766543333333344
Q ss_pred CCCEEEcCCCCCCC--CCCCCCcCCCCCccEEEccCCCC
Q 037325 216 SFVELHLPNCNLPS--LPLSFPSLNFASLQVLDLSNNDF 252 (598)
Q Consensus 216 ~L~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~L~~n~l 252 (598)
.+++++.++..+.- .......++-++++..+++.|..
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 56667766664432 22223444455666666666543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.17 E-value=0.065 Score=29.82 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=4.8
Q ss_pred CCCEEECCCCcCc
Q 037325 547 FLYILDMSNNSLS 559 (598)
Q Consensus 547 ~L~~L~ls~N~l~ 559 (598)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.96 E-value=0.29 Score=27.74 Aligned_cols=14 Identities=57% Similarity=0.584 Sum_probs=8.1
Q ss_pred CCCCEEECCCCcCc
Q 037325 546 SFLYILDMSNNSLS 559 (598)
Q Consensus 546 ~~L~~L~ls~N~l~ 559 (598)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.96 E-value=0.29 Score=27.74 Aligned_cols=14 Identities=57% Similarity=0.584 Sum_probs=8.1
Q ss_pred CCCCEEECCCCcCc
Q 037325 546 SFLYILDMSNNSLS 559 (598)
Q Consensus 546 ~~L~~L~ls~N~l~ 559 (598)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.57 E-value=0.0087 Score=53.96 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+|+.||++. +.+.. +-..++.++.+..||++.|.+. -+|..+.++..++.+++..|..+ .
T Consensus 41 ~kr~tvld~~s--------------~r~vn-~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~ 102 (326)
T KOG0473|consen 41 FKRVTVLDLSS--------------NRLVN-LGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-Q 102 (326)
T ss_pred cceeeeehhhh--------------hHHHh-hccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-h
Confidence 56888898887 33332 2234566778888899988887 57888888888888888888887 7
Q ss_pred cchhccCCCCCCEEEccCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~ 174 (598)
.|.+++..++++++++..+.+
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred CCccccccCCcchhhhccCcc
Confidence 888888899998888877653
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.69 E-value=0.35 Score=27.37 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|++|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468999999999999 67765
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.69 E-value=0.35 Score=27.37 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|++|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468999999999999 67765
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.68 E-value=1.1 Score=25.35 Aligned_cols=16 Identities=50% Similarity=0.588 Sum_probs=8.7
Q ss_pred CCCEEECCCCcCccccc
Q 037325 547 FLYILDMSNNSLSGSTP 563 (598)
Q Consensus 547 ~L~~L~ls~N~l~~~~p 563 (598)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555556666555 344
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=79.92 E-value=1.8 Score=33.80 Aligned_cols=24 Identities=29% Similarity=0.081 Sum_probs=14.2
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhh
Q 037325 1 MGGNKSATSALLLLLLLSGILHPET 25 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (598)
|| +++++++++++.+++.+++.++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence 88 7777666665555555444333
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.30 E-value=13 Score=38.04 Aligned_cols=66 Identities=26% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCcccc---CCCCccEEECcCCCcCccccchh
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA---SLNSLQELDLSGNSFLGGQLSRN 308 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~ 308 (598)
+.+++++++.|.+....|-.+..-. --+.++.|..+...-..+. .-..+.+++++.|. ....+|..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~-~Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNG-GKDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCC-CCccchhH
Confidence 4567777777777665554433211 1144555544422111110 01135566666665 44444443
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.79 E-value=3 Score=23.70 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=9.3
Q ss_pred CCCCEEECCCCcCc
Q 037325 546 SFLYILDMSNNSLS 559 (598)
Q Consensus 546 ~~L~~L~ls~N~l~ 559 (598)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777665
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.94 E-value=5.2 Score=23.10 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=6.7
Q ss_pred CCCEEEccCccCcc
Q 037325 420 ELRTLVLNKARISD 433 (598)
Q Consensus 420 ~L~~L~l~~n~l~~ 433 (598)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 34455555555443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.43 E-value=6.5 Score=40.86 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=21.8
Q ss_pred cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 388 GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
.+.+.+..+++++|++.... ..-..-...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchh--hhhHHHHhcchhheeecccc
Confidence 34566777778887765332 10011234456666666666
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.50 E-value=12 Score=39.10 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=5.4
Q ss_pred CcEEEcCCCCCC
Q 037325 190 LVYFNLGGADLS 201 (598)
Q Consensus 190 L~~L~l~~n~~~ 201 (598)
|+.|-+.+|.+.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 444444444443
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.77 E-value=17 Score=20.40 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=4.4
Q ss_pred CCCEEeCcCC
Q 037325 392 LLKELYLASN 401 (598)
Q Consensus 392 ~L~~L~l~~n 401 (598)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 96
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=30.25 E-value=23 Score=26.19 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=7.4
Q ss_pred CCCCCCCCCCc
Q 037325 55 SSWVGEDCCSW 65 (598)
Q Consensus 55 ~~W~~~~~c~w 65 (598)
+.|.+.+||.|
T Consensus 57 C~~~~~~CC~~ 67 (75)
T PF02950_consen 57 CCKRNSECCSG 67 (75)
T ss_dssp -BTTTTCBSSS
T ss_pred CCCCCCCCCCC
Confidence 34566788988
Done!