Query 037325
Match_columns 598
No_of_seqs 445 out of 4661
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.8E-69 9.7E-74 600.5 45.1 551 31-597 8-707 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-59 1.1E-63 519.6 35.7 448 110-589 197-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2E-52 7E-57 454.8 39.0 479 65-587 14-564 (606)
4 4eco_A Uncharacterized protein 100.0 4.9E-54 1.7E-58 467.2 26.2 494 32-584 27-601 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 1.8E-51 6E-56 453.9 34.3 490 30-589 264-846 (876)
6 3t6q_A CD180 antigen; protein- 100.0 5.1E-50 1.7E-54 435.9 42.7 467 99-597 22-550 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-49 7.2E-54 436.9 44.7 489 74-597 24-587 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-49 8.7E-54 430.4 36.7 462 74-587 31-562 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-49 4.4E-54 447.0 32.9 484 63-594 14-550 (844)
10 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-48 9.9E-53 427.8 42.7 470 75-585 49-624 (680)
11 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-48 2.1E-52 414.5 34.5 485 63-587 4-514 (549)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-47 5.9E-52 416.0 37.3 461 99-597 21-548 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 3E-46 1E-50 403.5 33.0 467 74-588 27-536 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 9.6E-46 3.3E-50 415.5 35.7 456 75-585 48-562 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 3.5E-45 1.2E-49 395.1 36.1 449 113-597 28-521 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-45 7.6E-50 391.8 27.1 447 99-587 10-485 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-43 7.4E-48 376.4 27.7 440 116-597 3-471 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-42 5.6E-47 372.3 34.0 462 99-597 15-500 (549)
19 4eco_A Uncharacterized protein 100.0 6.8E-45 2.3E-49 395.4 13.4 435 113-591 81-586 (636)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-42 5.4E-47 372.8 28.2 455 78-587 34-514 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 6E-41 2E-45 366.9 35.9 460 75-584 52-581 (635)
22 1jl5_A Outer protein YOPM; leu 100.0 1.6E-41 5.6E-46 352.8 21.7 399 111-591 9-437 (454)
23 4ecn_A Leucine-rich repeat pro 100.0 3.1E-41 1.1E-45 372.3 25.0 337 225-591 435-826 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-40 2E-44 352.8 30.1 445 112-597 30-500 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 6.3E-39 2.2E-43 350.8 36.9 466 104-597 45-570 (635)
26 1ogq_A PGIP-2, polygalacturona 100.0 8E-41 2.7E-45 331.3 18.8 292 31-402 2-302 (313)
27 1jl5_A Outer protein YOPM; leu 100.0 1.5E-40 5.1E-45 345.6 20.8 407 75-569 11-439 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.9E-38 6.3E-43 332.6 32.5 362 138-587 30-412 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 2.6E-38 9E-43 331.4 28.2 383 61-484 6-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-37 1.3E-41 320.3 27.8 365 101-590 30-394 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-37 2E-41 318.9 28.9 407 74-596 41-456 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.4E-35 8.1E-40 309.2 34.3 345 159-560 43-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 9.7E-35 3.3E-39 304.6 35.7 344 113-536 46-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 5.5E-34 1.9E-38 300.2 27.7 303 216-561 33-335 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 5.6E-33 1.9E-37 292.6 29.3 301 241-583 33-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 9E-33 3.1E-37 283.0 25.5 310 111-458 43-353 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 1.6E-32 5.3E-37 281.2 26.5 309 214-583 44-352 (390)
38 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.6E-36 269.3 32.6 305 213-583 42-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4.4E-32 1.5E-36 293.0 27.3 310 112-458 50-359 (597)
40 4fmz_A Internalin; leucine ric 100.0 5.3E-31 1.8E-35 265.5 33.0 306 109-456 40-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 4.8E-32 1.6E-36 292.8 26.6 309 214-583 50-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.4E-39 303.9 1.1 320 241-589 86-446 (461)
43 4fcg_A Uncharacterized protein 100.0 1.1E-32 3.7E-37 274.5 11.4 268 30-322 22-310 (328)
44 1ogq_A PGIP-2, polygalacturona 100.0 4E-32 1.4E-36 268.8 15.0 253 288-585 50-307 (313)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.7E-33 1.3E-37 292.8 4.4 374 109-540 24-445 (461)
46 3ogk_B Coronatine-insensitive 100.0 1.1E-32 3.8E-37 298.7 2.1 414 104-561 64-528 (592)
47 1xku_A Decorin; proteoglycan, 100.0 5.5E-29 1.9E-33 248.8 28.4 268 265-581 53-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-29 1.1E-33 250.7 25.8 288 241-581 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.9E-28 6.5E-33 244.8 29.0 269 113-402 52-330 (330)
50 2ft3_A Biglycan; proteoglycan, 100.0 6.3E-29 2.2E-33 248.5 25.3 291 114-455 34-331 (332)
51 3ogk_B Coronatine-insensitive 100.0 1.1E-30 3.7E-35 283.0 3.7 418 130-585 65-528 (592)
52 2p1m_B Transport inhibitor res 99.9 1E-30 3.5E-35 283.4 -6.6 165 107-272 60-243 (594)
53 2z80_A TOLL-like receptor 2, v 99.9 5.5E-27 1.9E-31 236.5 20.8 285 111-436 29-318 (353)
54 2z80_A TOLL-like receptor 2, v 99.9 7.8E-27 2.7E-31 235.4 21.2 282 214-563 30-318 (353)
55 2z66_A Variable lymphocyte rec 99.9 4.3E-27 1.5E-31 232.4 18.5 230 113-380 28-261 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-26 1.3E-30 244.2 26.0 267 241-569 41-307 (622)
57 2z66_A Variable lymphocyte rec 99.9 3.8E-27 1.3E-31 232.8 15.4 244 63-326 7-261 (306)
58 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.8E-31 230.3 18.9 204 344-583 105-314 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.8E-32 237.5 8.2 268 266-588 12-281 (317)
60 3zyi_A Leucine-rich repeat-con 99.9 7.9E-26 2.7E-30 235.9 22.2 228 113-356 75-303 (452)
61 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-25 1.1E-29 237.0 26.9 269 215-546 40-308 (622)
62 3zyj_A Leucine-rich repeat-con 99.9 2.3E-25 7.9E-30 231.5 24.2 229 113-380 64-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 2.1E-27 7E-32 235.0 6.0 207 311-584 93-310 (312)
64 3zyj_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 228.9 24.3 248 266-583 45-292 (440)
65 3zyi_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 229.7 24.4 248 266-583 56-303 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-27 2.4E-31 231.7 9.3 252 290-596 12-264 (317)
67 2p1m_B Transport inhibitor res 99.9 6.2E-28 2.1E-32 261.5 1.3 437 117-581 47-542 (594)
68 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-25 6.1E-30 218.3 17.8 207 240-457 32-238 (285)
69 1ozn_A Reticulon 4 receptor; N 99.9 3E-25 1E-29 216.7 18.7 254 191-465 14-269 (285)
70 1wwl_A Monocyte differentiatio 99.9 5.8E-27 2E-31 231.8 3.6 266 55-381 22-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 1.6E-25 5.4E-30 234.8 14.1 234 289-578 35-270 (487)
72 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6.2E-30 234.4 10.6 228 314-595 35-263 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 203.4 21.2 215 60-299 2-216 (270)
74 3goz_A Leucine-rich repeat-con 99.9 1.3E-24 4.6E-29 219.6 6.3 213 244-459 2-240 (362)
75 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4.1E-29 219.9 5.8 271 268-561 2-299 (362)
76 2ast_B S-phase kinase-associat 99.9 5.5E-24 1.9E-28 213.1 5.6 270 60-363 34-313 (336)
77 3rfs_A Internalin B, repeat mo 99.9 2.2E-22 7.4E-27 194.8 16.5 178 137-325 40-217 (272)
78 2z62_A TOLL-like receptor 4, v 99.9 7.7E-22 2.6E-26 191.5 19.6 205 241-458 29-238 (276)
79 2z62_A TOLL-like receptor 4, v 99.9 6.6E-22 2.3E-26 192.0 18.7 206 190-406 30-239 (276)
80 2ca6_A RAN GTPase-activating p 99.9 2.9E-23 1E-27 211.9 9.2 248 303-587 22-320 (386)
81 2ca6_A RAN GTPase-activating p 99.9 5.9E-24 2E-28 217.1 3.4 209 239-453 93-339 (386)
82 3rfs_A Internalin B, repeat mo 99.9 5.9E-22 2E-26 191.7 16.7 206 211-439 37-242 (272)
83 1p9a_G Platelet glycoprotein I 99.9 4.4E-21 1.5E-25 187.0 22.3 204 108-326 5-208 (290)
84 2o6q_A Variable lymphocyte rec 99.9 5.6E-21 1.9E-25 184.7 22.7 182 240-432 37-218 (270)
85 2ast_B S-phase kinase-associat 99.9 2.2E-22 7.5E-27 201.5 13.1 257 189-466 48-315 (336)
86 4glp_A Monocyte differentiatio 99.9 4E-22 1.4E-26 196.9 13.7 208 313-584 91-308 (310)
87 4glp_A Monocyte differentiatio 99.9 1.5E-21 5.1E-26 192.8 15.8 206 213-433 89-308 (310)
88 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.6E-25 182.9 21.4 203 211-432 6-208 (290)
89 3m19_A Variable lymphocyte rec 99.9 6.5E-21 2.2E-25 182.1 18.0 190 60-300 2-191 (251)
90 1h6u_A Internalin H; cell adhe 99.8 2.9E-20 1E-24 183.0 18.9 193 109-325 37-229 (308)
91 2xwt_C Thyrotropin receptor; s 99.8 9.8E-21 3.4E-25 179.5 13.9 196 114-323 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 2E-19 6.8E-24 171.7 20.0 180 216-406 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.1E-24 177.4 19.4 208 117-380 23-230 (308)
94 3cvr_A Invasion plasmid antige 99.8 4E-20 1.4E-24 195.3 14.9 195 344-571 60-255 (571)
95 2xwt_C Thyrotropin receptor; s 99.8 8.4E-20 2.9E-24 173.0 14.1 112 211-326 51-169 (239)
96 2o6s_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 163.3 15.7 162 112-287 27-188 (208)
97 4ay9_X Follicle-stimulating ho 99.8 3.4E-19 1.2E-23 178.9 14.8 192 104-329 23-218 (350)
98 3cvr_A Invasion plasmid antige 99.8 4.6E-19 1.6E-23 187.1 15.0 203 64-335 49-252 (571)
99 4ay9_X Follicle-stimulating ho 99.8 7.3E-18 2.5E-22 169.2 16.7 241 267-534 12-258 (350)
100 2o6s_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 154.3 17.0 110 212-323 49-158 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-17 4.7E-22 155.2 15.3 86 489-584 82-167 (220)
102 3e6j_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 153.4 17.9 163 55-254 11-173 (229)
103 1m9s_A Internalin B; cell inva 99.7 2E-17 7E-22 176.6 18.1 171 109-300 39-209 (605)
104 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4E-22 162.9 14.7 170 109-299 42-211 (291)
105 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.6E-22 160.9 14.7 172 212-405 43-214 (291)
106 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.7E-21 170.3 16.7 172 213-406 41-212 (605)
107 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.1E-21 160.3 14.6 176 218-404 21-202 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-16 1.3E-20 145.4 16.0 134 266-406 34-168 (220)
109 2v9t_B SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 145.8 15.3 133 265-404 33-165 (220)
110 2xot_A Amphoterin-induced prot 99.7 3.1E-16 1.1E-20 157.9 15.4 177 242-432 20-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 5.4E-16 1.8E-20 144.4 15.8 153 218-381 14-166 (220)
112 1dce_A Protein (RAB geranylger 99.7 2.4E-19 8.2E-24 190.4 -8.2 89 487-588 462-551 (567)
113 4ezg_A Putative uncharacterize 99.7 2.7E-16 9.3E-21 143.9 12.8 153 262-432 42-194 (197)
114 1dce_A Protein (RAB geranylger 99.7 3.6E-19 1.2E-23 189.1 -8.9 188 110-328 346-548 (567)
115 4ezg_A Putative uncharacterize 99.7 7.4E-16 2.5E-20 141.0 13.8 132 260-404 62-194 (197)
116 1w8a_A SLIT protein; signaling 99.7 6.8E-16 2.3E-20 140.4 13.4 90 487-586 53-142 (192)
117 1xeu_A Internalin C; cellular 99.7 2.1E-16 7.3E-21 151.4 10.4 150 108-277 36-185 (263)
118 1xeu_A Internalin C; cellular 99.7 2.6E-16 8.7E-21 150.9 10.9 170 365-584 17-186 (263)
119 3e6j_A Variable lymphocyte rec 99.7 3E-15 1E-19 140.3 17.8 135 264-406 40-174 (229)
120 4b8c_D Glucose-repressible alc 99.7 3E-17 1E-21 179.8 4.1 260 32-326 129-404 (727)
121 2ell_A Acidic leucine-rich nuc 99.6 5.3E-15 1.8E-19 131.5 13.5 135 445-590 25-166 (168)
122 4b8c_D Glucose-repressible alc 99.6 6.1E-16 2.1E-20 169.5 5.6 92 238-333 245-336 (727)
123 3sb4_A Hypothetical leucine ri 99.6 8.9E-16 3E-20 152.6 5.2 285 112-425 24-327 (329)
124 3sb4_A Hypothetical leucine ri 99.6 2.2E-15 7.7E-20 149.7 7.3 288 137-450 24-327 (329)
125 1w8a_A SLIT protein; signaling 99.6 2E-14 6.8E-19 130.7 12.9 117 470-597 11-129 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 1.4E-14 4.6E-19 126.0 10.7 125 445-579 18-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1E-18 126.6 11.8 132 240-404 24-160 (168)
128 2o6r_A Variable lymphocyte rec 99.5 6.8E-14 2.3E-18 125.5 13.9 133 421-587 9-141 (177)
129 2wfh_A SLIT homolog 2 protein 99.5 8.1E-14 2.8E-18 126.6 13.9 88 487-584 53-140 (193)
130 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.1E-19 124.8 9.4 130 112-272 16-148 (149)
131 2wfh_A SLIT homolog 2 protein 99.5 1.5E-13 5E-18 124.9 13.8 115 471-597 14-129 (193)
132 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 121.0 12.1 106 470-585 12-117 (170)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-13 5.5E-18 122.8 10.0 132 416-583 16-153 (176)
134 2o6r_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 117.4 14.6 109 289-404 29-137 (177)
135 4fdw_A Leucine rich hypothetic 99.4 6.4E-12 2.2E-16 127.5 21.8 201 210-430 175-381 (401)
136 2r9u_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 118.2 12.1 103 471-584 16-119 (174)
137 1ds9_A Outer arm dynein; leuci 99.4 6.3E-15 2.1E-19 134.8 -2.4 158 387-583 14-185 (198)
138 4fdw_A Leucine rich hypothetic 99.4 9.2E-12 3.1E-16 126.3 20.6 243 184-478 132-381 (401)
139 4fs7_A Uncharacterized protein 99.4 3.5E-11 1.2E-15 122.5 21.5 327 208-597 64-391 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-12 7.6E-17 115.3 10.4 131 185-326 16-153 (176)
141 1ds9_A Outer arm dynein; leuci 99.3 1.8E-14 6.3E-19 131.7 -4.2 128 258-397 42-180 (198)
142 4fs7_A Uncharacterized protein 99.3 4.5E-11 1.5E-15 121.7 19.4 53 520-575 341-393 (394)
143 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 109.8 10.4 96 489-597 10-105 (170)
144 3un9_A NLR family member X1; l 99.3 4.5E-13 1.5E-17 134.6 0.7 75 365-439 181-259 (372)
145 3un9_A NLR family member X1; l 99.3 4.2E-13 1.4E-17 134.8 0.0 93 366-458 154-253 (372)
146 2r9u_A Variable lymphocyte rec 99.2 2.7E-11 9.1E-16 107.8 10.6 96 489-597 13-108 (174)
147 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.5E-15 114.1 11.9 98 100-203 20-118 (347)
148 2ifg_A High affinity nerve gro 99.1 3.2E-10 1.1E-14 113.4 10.7 85 488-583 31-116 (347)
149 4gt6_A Cell surface protein; l 99.1 1.2E-08 3.9E-13 103.8 22.2 318 106-456 56-390 (394)
150 2ra8_A Uncharacterized protein 99.0 5.8E-10 2E-14 110.9 8.7 161 283-455 167-341 (362)
151 4gt6_A Cell surface protein; l 99.0 1.1E-07 3.8E-12 96.5 24.2 155 133-297 58-214 (394)
152 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.4E-14 106.0 5.1 42 107-148 133-182 (362)
153 4h09_A Hypothetical leucine ri 98.6 4.3E-06 1.5E-10 84.3 22.3 130 308-452 212-341 (379)
154 4h09_A Hypothetical leucine ri 98.6 3.4E-06 1.1E-10 85.0 20.9 276 100-401 56-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 5.9E-08 2E-12 86.9 4.3 98 305-404 28-136 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.6E-08 8.9E-13 89.3 1.5 113 344-456 37-163 (185)
157 3rw6_A Nuclear RNA export fact 98.4 9.2E-08 3.1E-12 90.0 3.4 65 521-587 169-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.3E-07 2.5E-11 83.9 6.6 79 487-577 169-258 (267)
159 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4E-11 76.4 4.5 86 344-433 62-154 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.2E-11 75.2 3.0 83 489-581 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 3.8E-05 1.3E-09 68.2 4.6 63 366-428 69-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 8.4E-05 2.9E-09 65.9 3.9 93 362-454 36-136 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.001 3.5E-08 55.0 6.5 57 491-559 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0032 1.1E-07 52.0 6.3 55 470-535 11-68 (130)
165 2lz0_A Uncharacterized protein 29.9 54 0.0018 24.8 3.9 38 259-297 15-52 (100)
166 2lz0_A Uncharacterized protein 25.6 80 0.0027 23.8 4.2 35 520-555 18-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-69 Score=600.49 Aligned_cols=551 Identities=27% Similarity=0.378 Sum_probs=401.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCC-------------------
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSF------------------- 90 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~------------------- 90 (598)
.+.++|++||++||+++.||. .+.+| .+.|||.|+||+|+ .++|+.|||++....+.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 356889999999999999888 89999 57899999999998 68999999987542211
Q ss_pred -----------------CCcccCCCCCcceecCc--cccCCCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCC
Q 037325 91 -----------------GSFEDDAGHELGGEISP--SLLQLKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFF 150 (598)
Q Consensus 91 -----------------~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l 150 (598)
.+..++..+.+.|.+|. .++++++|++|+|++|.+.+. .|..+ .++++|++|++++|++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence 11223445666666666 677777777777777776654 44443 5666777777777776
Q ss_pred Ccccchh---ccCCCCCCEEEccCCCCCCCcc-------------------ChhhhcCCCCCcEEEcCCCCCCCCcccch
Q 037325 151 SGTIPQT---LGNLSNLLYLDLNNFLDQSNQI-------------------DLEWLSGLSSLVYFNLGGADLSKAGAYWL 208 (598)
Q Consensus 151 ~~~~p~~---l~~l~~L~~L~L~~n~~~~~~~-------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 208 (598)
++..|.. +.++++|++|++++|.+..... ....+.++++|++|++++|.+.+.. +
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF---S 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH---H
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc---c
Confidence 6555554 4444444444444443211110 0111566677777777777776554 5
Q ss_pred HhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC-CCCCEEEccCCcccccCCccccCC
Q 037325 209 EVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI-TSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 209 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
..+..+++|++|++++|.+++..+.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++.+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 67777888888888888776554422 56677777777777766666666554 777777777777777777777777
Q ss_pred CCccEEECcCCCcCccccchh-hcCCCCCCEEecccccCCcccchhhhCCC-C------------------CC--CCCCc
Q 037325 288 NSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLS-E------------------CT--NSILL 345 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~------------------~~--~~~~L 345 (598)
++|++|++++|. +.+.+|.. +..+++|++|++++|.+.+..|..+..+. . .. ..++|
T Consensus 318 ~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 318 SLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp TTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 777777777777 44455544 67777777777777777665555443322 0 00 03368
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.. |. .+..+++|+.|+
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~---~~~~l~~L~~L~ 472 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQ---ELMYVKTLETLI 472 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC-CG---GGGGCTTCCEEE
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC-CH---HHcCCCCceEEE
Confidence 88888888888888888888888888888888888888888888888888888888888766 53 356778888888
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS 501 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~ 501 (598)
+++|++++.+|..+.. +++|++|++++|++++.+|.++... .|+.|++++|++.|.+|.. +++|++||+++|+++
T Consensus 473 L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 8888888888887765 7888889999888888888888776 8888889988888888765 577888889988888
Q ss_pred ccCCchhhccc-----------------------------------------------------------CCCC-Ccccc
Q 037325 502 GLIPNDIGQNL-----------------------------------------------------------PFLT-DLGNL 521 (598)
Q Consensus 502 ~~~p~~~~~~~-----------------------------------------------------------~~~~-~~~~l 521 (598)
|.+|..++... +.+| .+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 88887765421 0111 23456
Q ss_pred CCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
++|+.|||++|+++|.+|..|+++++|++|+|++|+++|.+|..++++++|++||+++|+++|.+|..+.++++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 7788888888888888888888888888888888888888888888888888888888888888888888887765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-59 Score=519.64 Aligned_cols=448 Identities=30% Similarity=0.448 Sum_probs=317.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 189 (598)
..+++|++|++++|.+.+. +|. +.++++|++|++++|.+++.+|..++.+++|++|++++|.+...... ..+++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~ 270 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKS 270 (768)
T ss_dssp TTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTT
T ss_pred ccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCC
Confidence 4455555555555555543 343 55555555555555555555555555555555555555544322111 14455
Q ss_pred CcEEEcCCCCCCCCcccchHhhhc-CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchh-hhcCCCCC
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNK-LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW-LFNITSLL 267 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~ 267 (598)
|++|++++|.+.+.. +..+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|.. +.++++|+
T Consensus 271 L~~L~L~~n~l~~~i---p~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 271 LQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCEEECCSSEEEESC---CCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred CCEEECcCCccCCcc---CHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 555555555554332 223322 2555555555555554443 34445555555555555555444443 55555555
Q ss_pred EEEccCCcccccCCccccCCC-CccEEECcCCCcCccccchhhcC--CCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGK--LCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+|++++|.+++.+|..+..++ +|++|++++|. +.+.+|..+.. +++|++|++++|.+++..|..+..++ +
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~------~ 419 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS------E 419 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT------T
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC------C
Confidence 555555555555555555444 55555555555 34444444444 56677777777777767776666666 7
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEE
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L 424 (598)
|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++++.. |. .+..+++|++|
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~---~l~~l~~L~~L 495 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PS---GLSNCTNLNWI 495 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CG---GGGGCTTCCEE
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CH---HHhcCCCCCEE
Confidence 888888888888888888888888888888888888888888888888888888888888765 43 36677888888
Q ss_pred EccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC-----------------
Q 037325 425 VLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW----------------- 486 (598)
Q Consensus 425 ~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~----------------- 486 (598)
++++|++++.+|.++.. +++|++|++++|+++|.+|..+... .|+.+++++|++.|.+|..
T Consensus 496 ~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp ECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 88888888888887766 6788888888888888888877766 7888888888887766642
Q ss_pred --------------------------------------------------------CcCCcEEEccCCcccccCCchhhc
Q 037325 487 --------------------------------------------------------SFNVTKLYLRDNSFSGLIPNDIGQ 510 (598)
Q Consensus 487 --------------------------------------------------------~~~L~~L~ls~n~l~~~~p~~~~~ 510 (598)
+++|+.||+++|+++|.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 256889999999999999999988
Q ss_pred ccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcC
Q 037325 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~ 589 (598)
++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+.++++|++||+++|+++|.||+.
T Consensus 655 ----------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 655 ----------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ----------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ----------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999975
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-52 Score=454.79 Aligned_cols=479 Identities=20% Similarity=0.156 Sum_probs=374.3
Q ss_pred cccEEecC---------CCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhcc
Q 037325 65 WSGVSCNN---------RTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIG 135 (598)
Q Consensus 65 w~gv~c~~---------~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 135 (598)
+..|.|.+ ....++.||+++ +.+++..|..|.++++|++|+|++|.+.+. .|..|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSF--------------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTT--------------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTT
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccC--------------CccCcCChhHhccCccceEEECCCCcccee-Chhhcc
Confidence 44577753 234688999998 788888888888899999999999888865 677888
Q ss_pred CCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 136 SLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 136 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
++++|++|++++|++++..|..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. ...+..++
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~ 153 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIK---LPKGFPTE 153 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCC---CCTTCCCT
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccC---cccccCCc
Confidence 8899999999999888777888888899999999888765432 223778888888888888887753 23444588
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCcc--EEEccCCCCCCCcchhhhcC------------------------------
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQ--VLDLSNNDFNSTTPHWLFNI------------------------------ 263 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l------------------------------ 263 (598)
+|++|++++|.+++.++ ..+..+++|+ .|++++|.+++..+..+...
T Consensus 154 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232 (606)
T ss_dssp TCCEEECCSSCCCEECH-HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEEC
T ss_pred ccCEEEcccCcccccCh-hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheec
Confidence 88888888888887655 4566777777 78888888776555443221
Q ss_pred ---------------------CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccc
Q 037325 264 ---------------------TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 264 ---------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 322 (598)
.+|+.|++++|.+++..+..+..+++|++|++++|.+ . .+|..+..+++|++|++++
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~-~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S-ELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-S-CCCSSCCSCTTCCEEECTT
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-C-CCChhhcccccCCEEECcc
Confidence 1577788888888776666788888888888888884 3 6777788888888888888
Q ss_pred ccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcc-ccCCCCCCCEEEccCCcCCccc--hhhccCCCCCCEEeCc
Q 037325 323 NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI-SLGSLKNLRHLVLWQNSFLGSI--PPSIGNLTLLKELYLA 399 (598)
Q Consensus 323 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~--~~~l~~l~~L~~L~l~ 399 (598)
|.+.+..+..+..++ +|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 311 n~l~~~~~~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 311 NKFENLCQISASNFP------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp CCCSBGGGGCGGGCT------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred CCcCcCchhhhhccC------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 888887777777777 788888888888766554 4788888888888888887665 6678888888888888
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNN 478 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~ 478 (598)
+|.+++.. +. .+..+++|+.|++++|++.+..+......+++|++|++++|.+++..|..+... .|+.|++++|+
T Consensus 385 ~n~l~~~~-~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 385 YNEPLSLK-TE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp SCSCEEEC-TT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCcCCcCC-HH---HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 88887664 32 366778888888888888877665433447888889998888888878777665 88888898888
Q ss_pred Cccc-CC-----CCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEE
Q 037325 479 FEGR-LL-----LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILD 552 (598)
Q Consensus 479 l~~~-~~-----~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 552 (598)
+.+. ++ ..+++|++|++++|++++..|..+.. +++|+.|+|++|++++..|..+.+++.| +|+
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS----------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhcc----------ccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 8762 22 23578888899988888777777766 7888899999998888888888888888 889
Q ss_pred CCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 553 MSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 553 ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++++..|..+..+++|+++++++|++.+..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998888888888888888999999988876444
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-54 Score=467.22 Aligned_cols=494 Identities=17% Similarity=0.243 Sum_probs=392.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC--------CCCCCC-CCCCCCCc---ccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCC
Q 037325 32 CQEAERKALLQFKQSLRDPS--------GQLSSW-VGEDCCSW---SGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGH 99 (598)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~--------~~~~~W-~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 99 (598)
....|++||.++++++.++. ...++| .+.+||.| .||+|+.. ++|+.|+|++ +
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------------~ 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------------F 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTT--------------S
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecC--------------c
Confidence 44579999999999874332 123489 57899999 99999864 8999999999 8
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCC------C-----CCcchhccCCCCCCEEECcCCCCCcccchhccC-CCCCCEE
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSMNNFT------G-----FQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN-LSNLLYL 167 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L 167 (598)
++.|.+|++++++++|++|+|++|.+. + ..+|... +..|+ ++++++.+.+.+|..+.. +..+..+
T Consensus 92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~ 168 (636)
T 4eco_A 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINS 168 (636)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhc
Confidence 999999999999999999999999762 1 0144433 45677 888888888877776652 1222222
Q ss_pred EccCCCCCCCccChhhhcCCCCCcEEEcC--CCCCCCCcccchHhhhcCCCCCEEEcCCCCCCC----------------
Q 037325 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLG--GADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS---------------- 229 (598)
Q Consensus 168 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~--~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---------------- 229 (598)
++...... ......++.+.+. .|.++++ |..+.++++|++|++++|.+++
T Consensus 169 ~l~~~~~~--------~~~~~~l~~l~l~~~~n~l~~i----p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 169 DPQQKSIK--------KSSRITLKDTQIGQLSNNITFV----SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp CTTSCCCC--------CCCCCCCCTTTTTCCSCEEEEE----CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred Cccccccc--------cccccchhhhhhccccCCCccC----CHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 22211110 0111222222232 3556652 6778899999999999999988
Q ss_pred --CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc-ccc-cCCccccCC------CCccEEECcCCC
Q 037325 230 --LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND-LQG-DIPDGFASL------NSLQELDLSGNS 299 (598)
Q Consensus 230 --~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~ 299 (598)
+|....+.++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 5543222389999999999999999999999999999999999998 888 788887765 899999999999
Q ss_pred cCccccch--hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC-CCEEEccC
Q 037325 300 FLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN-LRHLVLWQ 376 (598)
Q Consensus 300 ~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~ls~ 376 (598)
+. .+|. .++.+++|++|++++|.+.+.+| .+..++ +|++|++++|.++ .+|..+..+++ |++|++++
T Consensus 317 -l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~------~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 317 -LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI------KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp -CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE------EESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred -CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC------CCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 44 7888 89999999999999999998888 677666 8999999999998 78888999999 99999999
Q ss_pred CcCCccchhhccCCC--CCCEEeCcCCcCCcccCCCchhh----hcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 377 NSFLGSIPPSIGNLT--LLKELYLASNQMNGQKISDSYQH----LKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 377 n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~----l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
|+++ .+|..+...+ +|++|++++|.+++.. |..+.. ...+++|+.|++++|+++ .+|..++..+++|++|+
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcc-hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEE
Confidence 9998 7888777654 8999999999999876 543321 116679999999999999 45655555578999999
Q ss_pred ccCCcCcccCCCCcc-cC--------CCCEEEcccCcCcccCCC-----CCcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 451 VAYNELRGRVPNSLG-FN--------FPAKVDLSFNNFEGRLLL-----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 451 ls~n~~~~~~p~~~~-~~--------~L~~l~ls~n~l~~~~~~-----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
+++|+++ .+|.... .. .|+.|++++|+++ .+|. .+++|+.|++++|++++ +|..++.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~------ 534 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN------ 534 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG------
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc------
Confidence 9999999 5665443 22 7999999999998 4554 45799999999999997 8988887
Q ss_pred CccccCCCCeEeC------cCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 517 DLGNLKQLITLVI------SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 517 ~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+++|+.|+| ++|++.+.+|..++++++|++|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 535 ----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 535 ----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 899999999 56888999999999999999999999999 58998877 899999999998763
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-51 Score=453.89 Aligned_cols=490 Identities=16% Similarity=0.215 Sum_probs=366.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCC------CCCC--CCc------------ccEEecCCCCcEEEEEcCCCCCCC
Q 037325 30 SGCQEAERKALLQFKQSLRDPSGQLSSWV------GEDC--CSW------------SGVSCNNRTASVIKLNLNNPFRDS 89 (598)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~------~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~ 89 (598)
+++..+|++||++||+++.+| +|. ..+| |.| .||+|+. .++|+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 345678999999999999766 562 2355 999 9999986 68999999999
Q ss_pred CCCcccCCCCCcceecCccccCCCCCCEEeC-CCCCCCCCCcchhccCC-CCCC-----EE---------E-CcCCCCCc
Q 037325 90 FGSFEDDAGHELGGEISPSLLQLKDLEYLDL-SMNNFTGFQVPEFIGSL-KELR-----YL---------N-LSGSFFSG 152 (598)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~-----~L---------~-L~~n~l~~ 152 (598)
+++.|.+|+.++++++|++|+| ++|.+.+. .|-..... ..+. .+ + .....+.+
T Consensus 333 ---------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 333 ---------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp ---------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred ---------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 8999999999999999999999 88877654 22111100 0000 00 0 00111222
Q ss_pred ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCC--CCCCCCcccchHhhhcCCCCCEEEcCCCCCCC-
Q 037325 153 TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGG--ADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS- 229 (598)
Q Consensus 153 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~--n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~- 229 (598)
.++..+...+....... .....++.+.+.. |.++++ |..+.++++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~~~~i~~---------------~~~l~l~~l~l~~~~N~L~~I----P~~l~~L~~L~~L~Ls~N~Lsg~ 463 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKK---------------DSRISLKDTQIGNLTNRITFI----SKAIQRLTKLQIIYFANSPFTYD 463 (876)
T ss_dssp HHHHHHHTCTTSCCCCC---------------CCCCCCCTTTTTCCSCEEEEE----CGGGGGCTTCCEEEEESCCCCGG
T ss_pred HHHHHhhhCcccccccc---------------ccccchhhceeccccCcccch----hHHHhcCCCCCEEECcCCcCCCC
Confidence 22222222221111100 0111122222222 455542 5567777777777777777777
Q ss_pred -----------------CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc-ccc-cCCccccCC---
Q 037325 230 -----------------LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND-LQG-DIPDGFASL--- 287 (598)
Q Consensus 230 -----------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l--- 287 (598)
+|....+.++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..++.+
T Consensus 464 ~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~ 543 (876)
T 4ecn_A 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543 (876)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhc
Confidence 4543323488999999999999999999999999999999999998 887 777765544
Q ss_pred ----CCccEEECcCCCcCccccch--hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcc
Q 037325 288 ----NSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 288 ----~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
++|+.|++++|. +. .+|. .++.+++|+.|++++|.+. .+| .+..++ +|+.|++++|.++ .+|.
T Consensus 544 ~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~------~L~~L~Ls~N~l~-~lp~ 612 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNN-LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV------KLTDLKLDYNQIE-EIPE 612 (876)
T ss_dssp TTTTTTCCEEECCSSC-CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS------EESEEECCSSCCS-CCCT
T ss_pred ccccCCccEEEeeCCc-CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC------cceEEECcCCccc-cchH
Confidence 499999999999 44 7887 8999999999999999988 555 666666 8999999999998 7888
Q ss_pred ccCCCCC-CCEEEccCCcCCccchhhccCCCC--CCEEeCcCCcCCcccCCCchhhhc--CCCCCCEEEccCccCccccc
Q 037325 362 SLGSLKN-LRHLVLWQNSFLGSIPPSIGNLTL--LKELYLASNQMNGQKISDSYQHLK--NQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 362 ~l~~l~~-L~~L~ls~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~~l~--~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+..+++ |+.|++++|++. .+|..+...+. |+.|++++|.+++.+ |.....+. ..++|+.|++++|+++ .+|
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp 689 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQ-KFP 689 (876)
T ss_dssp TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCC-SCC
T ss_pred HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCC-ccC
Confidence 8888998 999999999988 77877776654 999999999998865 43222222 3458999999999998 566
Q ss_pred hHHHhcCCCCCEEEccCCcCcccCCCCccc-C--------CCCEEEcccCcCcccCCC-----CCcCCcEEEccCCcccc
Q 037325 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGF-N--------FPAKVDLSFNNFEGRLLL-----WSFNVTKLYLRDNSFSG 502 (598)
Q Consensus 437 ~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~-~--------~L~~l~ls~n~l~~~~~~-----~~~~L~~L~ls~n~l~~ 502 (598)
..+...+++|++|++++|+++ .+|..+.. . .|+.|++++|+++ .+|. .+++|+.|+|++|++++
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 666655889999999999998 66655433 1 6899999999998 4554 35789999999999996
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcC------CccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISN------NNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~ 576 (598)
+|..++. +++|+.|+|++ |.+.+.+|..|+++++|++|+|++|++ +.+|..+. ++|+.||
T Consensus 768 -lp~~l~~----------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 768 -FPTQPLN----------SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD 833 (876)
T ss_dssp -CCCGGGG----------CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred -cchhhhc----------CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence 8888877 89999999976 888899999999999999999999999 68998876 6999999
Q ss_pred ccCCCCcccCCcC
Q 037325 577 LRNNYLSGKLPLS 589 (598)
Q Consensus 577 l~~n~l~g~~P~~ 589 (598)
+++|++...-|..
T Consensus 834 Ls~N~l~~i~~~~ 846 (876)
T 4ecn_A 834 IADNPNISIDVTS 846 (876)
T ss_dssp CCSCTTCEEECGG
T ss_pred CCCCCCCccChHH
Confidence 9999987544433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-50 Score=435.95 Aligned_cols=467 Identities=24% Similarity=0.256 Sum_probs=368.4
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
.+++ .+|..+. +++++|++++|.+++. .|..+.++++|++|++++|++.+..|..|+++++|++|++++|.+...
T Consensus 22 ~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 96 (606)
T 3t6q_A 22 LGLN-EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM- 96 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-
T ss_pred CCcc-cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-
Confidence 3443 4555554 4799999999999975 688899999999999999999988899999999999999999876532
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
....+.++++|++|++++|.+.... +..+..+++|++|++++|.+++.+... +..+++|++|++++|.+++..+.
T Consensus 97 -~~~~~~~l~~L~~L~L~~n~i~~l~---~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 -AETALSGPKALKHLFFIQTGISSID---FIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp -CTTTTSSCTTCCEEECTTSCCSCGG---GSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHH
T ss_pred -ChhhhcccccccEeeccccCcccCC---cchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChh
Confidence 3345899999999999999999875 456889999999999999999875523 33489999999999999988899
Q ss_pred hhhcCCCCC--EEEccCCcccccCCccccCC-------------------------------------------------
Q 037325 259 WLFNITSLL--CLDLGSNDLQGDIPDGFASL------------------------------------------------- 287 (598)
Q Consensus 259 ~l~~l~~L~--~L~l~~n~l~~~~~~~l~~l------------------------------------------------- 287 (598)
.+..+++|+ .|++++|.+.+..|..+...
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 999999999 99999999987666544321
Q ss_pred --CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCC
Q 037325 288 --NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS 365 (598)
Q Consensus 288 --~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 365 (598)
.+|+.|++++|. +.+..+..+..+++|++|++++|.++ ..|..+..++ +|++|++++|.+.+..|..+..
T Consensus 252 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~------~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 252 CEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS------TLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT------TCCEEECTTCCCSBGGGGCGGG
T ss_pred hcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccC-CCChhhcccc------cCCEEECccCCcCcCchhhhhc
Confidence 156667777776 45555566777888888888888777 4444555555 7888888888887766777777
Q ss_pred CCCCCEEEccCCcCCccchhh-ccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC
Q 037325 366 LKNLRHLVLWQNSFLGSIPPS-IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 444 (598)
+++|++|++++|.+.+.++.. +..+++|++|++++|.+++.... ...+..+++|++|++++|++.+..+..+.. ++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~ 400 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC--NLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CP 400 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES--TTTTTTCTTCCEEECCSCSCEEECTTTTTT-CT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc--chhcccCCCCCEEECCCCcCCcCCHHHhcC-Cc
Confidence 888888888888777665543 77788888888888877654310 123667788888888888887776666655 67
Q ss_pred CCCEEEccCCcCcccCCCC-cccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccC---CchhhcccCCCC
Q 037325 445 TLDELDVAYNELRGRVPNS-LGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLI---PNDIGQNLPFLT 516 (598)
Q Consensus 445 ~L~~L~ls~n~~~~~~p~~-~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~---p~~~~~~~~~~~ 516 (598)
+|++|++++|++++..|.. +... .|+.|++++|.+.+..|.. +++|++|++++|++++.. +..+..
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------ 474 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------ 474 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG------
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc------
Confidence 8888888888887766544 4444 7888888888887766654 577888888888887622 233444
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQ 596 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L 596 (598)
+++|+.|++++|.+++..|..|+++++|++|++++|++++..|..+.++++| +|++++|++++..|..+..+++|
T Consensus 475 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 475 ----LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred ----CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC
Confidence 8999999999999998888999999999999999999999999999999999 99999999998888877777666
Q ss_pred C
Q 037325 597 E 597 (598)
Q Consensus 597 ~ 597 (598)
+
T Consensus 550 ~ 550 (606)
T 3t6q_A 550 R 550 (606)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-49 Score=436.88 Aligned_cols=489 Identities=24% Similarity=0.226 Sum_probs=290.1
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+.+..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|++++.
T Consensus 24 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 24 PTNITVLNLTH--------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CTTCSEEECCS--------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEECCC--------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCcc
Confidence 35789999988 455555555566666666666666666554 455555666666666666666533
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.+..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+++.++.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTK---LGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCC---CCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ChhhhccCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccC---chhhcccccCCEEEccCCcccccCHH
Confidence 3334566666666666665443221 123555566666666666555443 33445555555555555555554331
Q ss_pred C-CcCCCCCccEEEccCCCCCCCcchhhhcC---------------------------CCCCEEEccCCcccccCCcccc
Q 037325 234 F-PSLNFASLQVLDLSNNDFNSTTPHWLFNI---------------------------TSLLCLDLGSNDLQGDIPDGFA 285 (598)
Q Consensus 234 ~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~ 285 (598)
. ....+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 1 11233455555555555554444433322 3344444444444444444444
Q ss_pred CCCC--ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC--------------------------
Q 037325 286 SLNS--LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS-------------------------- 337 (598)
Q Consensus 286 ~l~~--L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------- 337 (598)
.++. |++|++++|. +.+..+..++.+++|++|++++|.+.+..+..+..++
T Consensus 244 ~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred ccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 4332 5555555555 3344444455555555555555555544444444333
Q ss_pred -CCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc-ch-hhccC--CCCCCEEeCcCCcCCcccCCCch
Q 037325 338 -ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS-IP-PSIGN--LTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 338 -~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~-~~l~~--l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
....+++|++|++++|.+.+..+..+..+++|++|++++|.+... ++ ..+.. .++|+.|++++|++++.. +
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-~--- 398 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-S--- 398 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-T---
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-h---
Confidence 011122555555555555555555555555566666655543221 11 11111 235666666666665543 3
Q ss_pred hhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCc--ccCCCC---
Q 037325 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFE--GRLLLW--- 486 (598)
Q Consensus 413 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~--~~~~~~--- 486 (598)
..+..+++|+.|++++|++++.++...+..+++|++|++++|++.+..+..+... .++.+++++|.+. +.+|..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 2356677777777777777766654434446777777777777776666666655 7788888888776 344443
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc--------hhccCCCCCCEEECCCCcC
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP--------LLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~ls~N~l 558 (598)
+++|+.|++++|++++..|..+.. +++|+.|++++|.+++..+ ..|.++++|++|++++|++
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEG----------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCCCcCChhhhcc----------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 577888888888888655555555 8999999999999985422 2378899999999999999
Q ss_pred ccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 559 ~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+...+..|.++++|+.|++++|++++..|..+..+++|+
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 944445689999999999999999965555677887775
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-49 Score=430.42 Aligned_cols=462 Identities=20% Similarity=0.157 Sum_probs=353.1
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+++..+..|.++++|++|++++|.+++. .|..+.++++|++|++++|.+++.
T Consensus 31 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 31 PSSTKNIDLSF--------------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp CTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCCcCEEECCC--------------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCccccc
Confidence 35789999998 778877777888888888888888888864 567788888888888888888877
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.|..|+++++|++|++++|.+..... ..+.++++|++|++++|.+.+.. ++..+.++++|++|++++|.+++.++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~Ls~n~l~~~~~- 170 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVDLSYNYIQTITV- 170 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCC--CCGGGGTCTTCCEEECCSSCCCEECT-
T ss_pred ChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCccccee--chHhHhhcCCCCEEEccCCcceecCh-
Confidence 78888888888888888887644332 22778888888888888887532 15678888888888888888877655
Q ss_pred CCcCCCCCc----cEEEccCCCCCCCcchhhhcCCCCCEEEccCCccc--------------------------------
Q 037325 234 FPSLNFASL----QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ-------------------------------- 277 (598)
Q Consensus 234 ~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------------------------------- 277 (598)
..+..+++| ++|++++|.+++..+..+... +|+.|++++|.+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 333333333 367777776664444333332 5666666665442
Q ss_pred --------------------------ccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccch
Q 037325 278 --------------------------GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331 (598)
Q Consensus 278 --------------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 331 (598)
+..|. +..+++|+.|++++|.+ ..+| .+..+++|++|++++|.+ +..|.
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc--hhhh-hccccccCCEEEcccccC-ccccc
Confidence 23333 55677888888888874 3445 677888888888888888 45553
Q ss_pred hhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc--chhhccCCCCCCEEeCcCCcCCcccCC
Q 037325 332 FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS--IPPSIGNLTLLKELYLASNQMNGQKIS 409 (598)
Q Consensus 332 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~ 409 (598)
+ .++ +|++|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..
T Consensus 325 -~-~l~------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-- 392 (606)
T 3vq2_A 325 -L-DLP------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-- 392 (606)
T ss_dssp -C-CCS------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--
T ss_pred -C-CCC------ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--
Confidence 3 455 7889999888655433 566888999999999988765 3677888899999999999887643
Q ss_pred CchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCccc-CCCC-
Q 037325 410 DSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGR-LLLW- 486 (598)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~- 486 (598)
..+..+++|+.|++++|++.+..+......+++|++|++++|.+++..|..+... .|+.|++++|++.+. +|..
T Consensus 393 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp ---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 2467788999999999998887773333347889999999999998888887766 899999999999874 4544
Q ss_pred --CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccch
Q 037325 487 --SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564 (598)
Q Consensus 487 --~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 564 (598)
+++|++|++++|++++..|..+.. +++|+.|++++|++++.+|..++++++|++|++++|+++ .+|.
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDT----------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred ccCCCCCEEECCCCcCCccChhhhcc----------cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 578999999999999877777766 889999999999999888999999999999999999998 6888
Q ss_pred hccCCC-CCCEEEccCCCCcccCC
Q 037325 565 SIGSLR-TVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 565 ~l~~l~-~L~~L~l~~n~l~g~~P 587 (598)
.+..++ +|++|++++|++.+..|
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSST
T ss_pred hHhhhcccCcEEEccCCCcccCCc
Confidence 888886 59999999999886544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=446.97 Aligned_cols=484 Identities=19% Similarity=0.185 Sum_probs=368.1
Q ss_pred CCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc-chhccCCCCCC
Q 037325 63 CSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV-PEFIGSLKELR 141 (598)
Q Consensus 63 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~ 141 (598)
|.|..|.+ ...+++.|||++ +.+++..+..|.++++|++|+|++|...+. + |..+.++++|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~--------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF--------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLR 76 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES--------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCC
T ss_pred CCCCCCCC--CCCCcCEEECCC--------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCC
Confidence 45666666 467899999998 789988899999999999999999966553 5 77899999999
Q ss_pred EEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEE
Q 037325 142 YLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221 (598)
Q Consensus 142 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 221 (598)
+|+|++|.+.+..|..|+++++|++|++++|.+.........+.++++|++|++++|.+.+..+ +..+.++++|++|+
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSID 154 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEE
Confidence 9999999999888999999999999999999876544444458899999999999999987652 35789999999999
Q ss_pred cCCCCCCCCCCCCCcCCC--CCccEEEccCCCCCCCcchhhhcCCC------CCEEEccCCcccccCCccccC-------
Q 037325 222 LPNCNLPSLPLSFPSLNF--ASLQVLDLSNNDFNSTTPHWLFNITS------LLCLDLGSNDLQGDIPDGFAS------- 286 (598)
Q Consensus 222 l~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~------- 286 (598)
+++|.+++..+ ..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++..+..+..
T Consensus 155 Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 155 FSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred CCCCcCCeeCH-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 99999988765 444444 78899999999888877776666555 899999988776655543321
Q ss_pred -------------------------------CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhC
Q 037325 287 -------------------------------LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335 (598)
Q Consensus 287 -------------------------------l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 335 (598)
.++|+.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 2567888888887 55666777777888888888888887777777776
Q ss_pred CCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhh
Q 037325 336 LSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415 (598)
Q Consensus 336 l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 415 (598)
++ +|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..
T Consensus 313 l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-------- 378 (844)
T 3j0a_A 313 LD------NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-------- 378 (844)
T ss_dssp CS------SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--------
T ss_pred CC------CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--------
Confidence 66 7888888888887777777788888888888888877666666777888888888888776432
Q ss_pred cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCC-ccc-CCCCEEEcccCcCcccC----CCCCcC
Q 037325 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS-LGF-NFPAKVDLSFNNFEGRL----LLWSFN 489 (598)
Q Consensus 416 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~-~~~-~~L~~l~ls~n~l~~~~----~~~~~~ 489 (598)
.+++|+.+++++|+++.. |.. ...++.+++++|++++..... +.. ..|+.|++++|++++.. +..+++
T Consensus 379 -~~~~L~~L~l~~N~l~~l-~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNKLVTL-PKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp -SCCSCSEEEEESCCCCCC-CCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred -CCCCcchhccCCCCcccc-ccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence 256777777777777633 322 346777788877776532211 112 27888888888887532 334678
Q ss_pred CcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCC
Q 037325 490 VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569 (598)
Q Consensus 490 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l 569 (598)
|+.|++++|.+++..+..+.. ..+..+++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCW-----DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCS-----SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred cccccCCCCccccccccccch-----hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 888888888886333221110 1124478889999999999888888888899999999999999876666655
Q ss_pred CCCCEEEccCCCCcccCCcCccCcC
Q 037325 570 RTVKFLVLRNNYLSGKLPLSLKNCT 594 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P~~~~~~~ 594 (598)
++|+.|++++|++++.+|..+.+++
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred ccccEEECCCCcCCCCChhHhCCcC
Confidence 7899999999999988888776554
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-48 Score=427.79 Aligned_cols=470 Identities=20% Similarity=0.168 Sum_probs=244.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
.+++.|++++ +.+.+..|..+.++++|++|+|++|.++.. .+..+.++++|++|++++|++++..
T Consensus 49 ~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 49 SQLTSLDVGF--------------NTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp TTCSEEECCS--------------SCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCcEEECCC--------------CccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccC
Confidence 4678888887 455555555566666666666666665532 2224555666666666666665444
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh--cCCCCCEEEcCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN--KLHSFVELHLPNCNLPSLPL 232 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~ 232 (598)
|..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. +..+. .+++|++|++++|.+++.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALK---SEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBC---HHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred hhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccC---HHHhhccccccccEEECCCCcccccCh
Confidence 455566666666666665443221 122445555555555555555443 22222 23445555555554444332
Q ss_pred C--------------------------------------------------CCcCCCC--CccEEEccCCCCCCCcchhh
Q 037325 233 S--------------------------------------------------FPSLNFA--SLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 233 ~--------------------------------------------------~~~~~l~--~L~~L~L~~n~l~~~~~~~l 260 (598)
. ..+..++ +|++|++++|++++..+..+
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 1 2222232 36666666666666666666
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-----ccch----hhcCCCCCCEEecccccCCcccch
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-----QLSR----NLGKLCNLRTMILSRNNISSEVSD 331 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----~~~~----~l~~l~~L~~L~l~~n~l~~~~~~ 331 (598)
..+++|++|++++|.+.+..|..+..+++|+.|++++|. ..+ .+|. .+..+++|++|++++|.+.+..+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 666677777777776666666666666666666666553 221 2222 566677788888888888777766
Q ss_pred hhhCCCCCCCCCCccEEEccCccccccC--ccccCC--CCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCccc
Q 037325 332 FLDGLSECTNSILLEKLELRFNQFTGIL--PISLGS--LKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQK 407 (598)
Q Consensus 332 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~--~~~l~~--l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 407 (598)
.+..++ +|++|++++|.+.... ...+.. .++|+.|++++|++.+..|..+..+++|++|++++|.+++..
T Consensus 348 ~~~~l~------~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 348 MFTGLI------NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp TTTTCT------TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred Hhcccc------CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 666665 5666666555432111 111111 134555555555555444444555555555555555544433
Q ss_pred CCCchhhhcCCCCCCEEEccCccCccccchHHHh-------------------------cCCCCCEEEccCCcCcccCCC
Q 037325 408 ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ-------------------------LSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 408 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+. ..+..+++|+.|++++|++.+..+..+.. .+++|++|++++|++++..+.
T Consensus 422 -~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 422 -TG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp -CS--GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -Cc--ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 11 12344444555555555444433333322 144555555555555544444
Q ss_pred CcccC-CCCEEEcccCcCcccC-----------CCCCcCCcEEEccCCcccccCCc-hhhcccCCCCCccccCCCCeEeC
Q 037325 463 SLGFN-FPAKVDLSFNNFEGRL-----------LLWSFNVTKLYLRDNSFSGLIPN-DIGQNLPFLTDLGNLKQLITLVI 529 (598)
Q Consensus 463 ~~~~~-~L~~l~ls~n~l~~~~-----------~~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~l~~L~~L~L 529 (598)
.+... .|+.|++++|++++.. ...+++|++|++++|+++ .+|. .+.. +++|+.|+|
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~----------l~~L~~L~L 567 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD----------LFELKIIDL 567 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT----------CTTCCEEEC
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc----------ccCcceeEC
Confidence 34333 4555555555554321 112345555555555554 3332 2222 555556666
Q ss_pred cCCccccccchhccCCCCCCEEECCCCcCccccchhcc-CCCCCCEEEccCCCCccc
Q 037325 530 SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG-SLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 530 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~ 585 (598)
++|++++..+..|.++++|++|++++|++++..|..+. .+++|+.+++++|++.+.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 66655544444455555566666666655555554444 455555666666655543
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-48 Score=414.51 Aligned_cols=485 Identities=19% Similarity=0.188 Sum_probs=382.5
Q ss_pred CCcccEEecCC-----------CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcc
Q 037325 63 CSWSGVSCNNR-----------TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVP 131 (598)
Q Consensus 63 c~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p 131 (598)
|.|.|| |+.. ..+++.|++++ +.+++..|..+.++++|++|++++|++++. .|
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~ 67 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------NKITYIGHGDLRACANLQVLILKSSRINTI-EG 67 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcC--------------CccCccChhhhhcCCcccEEECCCCCcCcc-Ch
Confidence 777777 6532 24688888888 788888889999999999999999999975 66
Q ss_pred hhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhh
Q 037325 132 EFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211 (598)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 211 (598)
..+.++++|++|++++|++++..|..|+++++|++|++++|.+..... ...+.++++|++|++++|.+.+..+ +..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~ 144 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIR--RIDF 144 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEEC--TTTT
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccC--Hhhh
Confidence 789999999999999999997777779999999999999997753221 2357899999999999998443321 4678
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC--C-ccccCCC
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI--P-DGFASLN 288 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~ 288 (598)
..+++|++|++++|.+++..+ ..+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + .....++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hcccccCeeeccCCcccccCh-hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 899999999999999998766 66778899999999999886443333467899999999999998642 2 2234578
Q ss_pred CccEEECcCCCcCcccc----chhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-----
Q 037325 289 SLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL----- 359 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----- 359 (598)
+|+.|++++|. +.+.. +..+..+++|+.+++++|.+.+................+++.|++.++.+....
T Consensus 224 ~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 224 PMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred cccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 89999999998 44433 334567889999999999876642211001111122237999999988765321
Q ss_pred ccccCCCCCCCEEEccCCcCCccchhhc-cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc-h
Q 037325 360 PISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS-D 437 (598)
Q Consensus 360 ~~~l~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~ 437 (598)
+......++|+.|++++|++. .+|..+ ..+++|++|++++|.+++.. +.....+..+++|+.|++++|++++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH-HHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc-ccchhhhhccccCcEEEccCCcccccccch
Confidence 112233578999999999987 666665 57999999999999998765 3222346788999999999999987643 1
Q ss_pred HHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 438 WFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
.....+++|++|++++|+++ .+|..+... .|++|++++|++++......++|++||+++|++++.+ ..
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~------ 449 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LF------ 449 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CC------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----cc------
Confidence 33344899999999999998 577777665 8999999999998543334579999999999999643 22
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++|+|++|+++ .+|. .+.+++|++|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 450 ----l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 ----LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ----CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ----CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 789999999999999 7887 5789999999999999999888899999999999999999998777
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-47 Score=415.98 Aligned_cols=461 Identities=21% Similarity=0.126 Sum_probs=319.4
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
.+++ .+|..+. +++++|+|++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+...
T Consensus 21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~- 95 (606)
T 3vq2_A 21 QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF- 95 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-
T ss_pred CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-
Confidence 3443 3454443 8999999999999975 666899999999999999999977788999999999999999876543
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
....+.++++|++|++++|.+.... +..+.++++|++|++++|.+++......+.++++|++|++++|++++..+.
T Consensus 96 -~p~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 96 -SPGSFSGLTSLENLVAVETKLASLE---SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp -CTTSSTTCTTCCEEECTTSCCCCSS---SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred -ChhhcCCcccCCEEEccCCcccccc---ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 2345899999999999999998876 356899999999999999998754336788999999999999999988887
Q ss_pred hhhcCCCCC----EEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE----------------
Q 037325 259 WLFNITSLL----CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM---------------- 318 (598)
Q Consensus 259 ~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L---------------- 318 (598)
.+..+++|+ .+++++|.+++..+..+.. .+|++|++++|.+..+..+..+..++.++.+
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 777666554 8999999998655554544 4899999999974334444455555544444
Q ss_pred ----------------------------------------ecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc
Q 037325 319 ----------------------------------------ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI 358 (598)
Q Consensus 319 ----------------------------------------~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 358 (598)
+++++.+.... .+..++ +|++|++++|.+ +.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~------~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHF------KWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTC------CCSEEEEESCCC-SS
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccc------cCCEEEcccccC-cc
Confidence 44444332211 222222 455555555555 34
Q ss_pred CccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchH
Q 037325 359 LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438 (598)
Q Consensus 359 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 438 (598)
+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|.+++.... ...+..+++|+.|++++|++.+. |..
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~-~~~ 394 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNGAIIM-SAN 394 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC--CHHHHCCSCCCEEECCSCSEEEE-CCC
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch--hhhhccCCcccEeECCCCccccc-hhh
Confidence 44 22 5555555555555433322 344555566666666555443100 12345556666666666665542 222
Q ss_pred HHhcCCCCCEEEccCCcCcccCC-CCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccccc-CCchhhccc
Q 037325 439 FWQLSLTLDELDVAYNELRGRVP-NSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGL-IPNDIGQNL 512 (598)
Q Consensus 439 ~~~~~~~L~~L~ls~n~~~~~~p-~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~-~p~~~~~~~ 512 (598)
+.. +++|++|++++|++.+..| ..+... .|+.+++++|.+.+..|.. +++|++|++++|++++. +|..+..
T Consensus 395 ~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-- 471 (606)
T 3vq2_A 395 FMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-- 471 (606)
T ss_dssp CTT-CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--
T ss_pred ccC-CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--
Confidence 322 4566666666666665555 334333 6666666666666555443 35666666666666653 4544444
Q ss_pred CCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccC
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKN 592 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~ 592 (598)
+++|+.|++++|.+++..|..|+++++|++|++++|++++.+|..+.++++|++|++++|+++ .+|..+..
T Consensus 472 --------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 472 --------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp --------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred --------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 788889999999888888888888889999999999888888888888888999999999888 68877776
Q ss_pred cC-CCC
Q 037325 593 CT-FQE 597 (598)
Q Consensus 593 ~~-~L~ 597 (598)
+. +|+
T Consensus 543 l~~~L~ 548 (606)
T 3vq2_A 543 FPKSLA 548 (606)
T ss_dssp SCTTCC
T ss_pred hcccCc
Confidence 64 354
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=403.50 Aligned_cols=467 Identities=22% Similarity=0.173 Sum_probs=377.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+++..+..|.++++|++|+|++|++++. .|..+.++++|++|++++|.+++.
T Consensus 27 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 27 PFSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCEEECCS--------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cccccEEEccC--------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCcc
Confidence 34688899988 788888888999999999999999999865 567789999999999999999877
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.|..|+++++|++|++++|.+..... ..+.++++|++|++++|.+.... ++..+.++++|++|++++|.+++.++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~l~~n~l~~~~~- 166 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECTTSCCCEECG-
T ss_pred CHhhhcCccccccccccccccccCCC--ccccccccccEEecCCCccceec--ChhhhcccCCCCEEeCcCCccceecH-
Confidence 77889999999999999987654332 13788999999999999988642 15788899999999999999988765
Q ss_pred CCcCCCCCc----cEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccc-cCCccccCCC--------------------
Q 037325 234 FPSLNFASL----QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG-DIPDGFASLN-------------------- 288 (598)
Q Consensus 234 ~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~-------------------- 288 (598)
..+..+++| +.+++++|.+++..+..+... +|+.|++++|.... .++..+..++
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 455666677 889999999988777766655 78899888874221 1111111111
Q ss_pred ------------CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 289 ------------SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 289 ------------~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
.++.+++.++....+..+..+..+++|++|++++|.+.+ .|..+..+ +|++|++++|.+.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-------~L~~L~l~~n~~~ 317 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-------GWQHLELVNCKFG 317 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-------CCSEEEEESCBCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-------CccEEeeccCccc
Confidence 245566666622556677888899999999999998875 44333332 5999999999998
Q ss_pred ccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc
Q 037325 357 GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 357 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++... ....+..+++|+.|++++|++.+..+
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccccc
Confidence 5554 5789999999999998876654 788999999999999876521 11357788999999999999987666
Q ss_pred hHHHhcCCCCCEEEccCCcCcccCCC-CcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc-ccCCchhhc
Q 037325 437 DWFWQLSLTLDELDVAYNELRGRVPN-SLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS-GLIPNDIGQ 510 (598)
Q Consensus 437 ~~~~~~~~~L~~L~ls~n~~~~~~p~-~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~-~~~p~~~~~ 510 (598)
. +. .+++|++|++++|.+.+..|. .+... .|+.+++++|.+.+..|.. +++|++|++++|+++ +.+|..+..
T Consensus 391 ~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 391 N-FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp E-EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred c-cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 5 33 478999999999999987663 44444 8999999999999877654 689999999999997 578877766
Q ss_pred ccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCc
Q 037325 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
+++|+.|++++|++++..|..|.++++|++|++++|++++..|..+.++++|+.|++++|++++..|.
T Consensus 469 ----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ----------ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 89999999999999988899999999999999999999988888899999999999999999998874
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-46 Score=415.53 Aligned_cols=456 Identities=20% Similarity=0.170 Sum_probs=381.8
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceec-CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEI-SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
.+++.|||++ +...+.+ |..|.++++|++|+|++|.+.+. .|..+.++++|++|+|++|.+++.
T Consensus 48 ~~L~~LdLs~--------------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 48 EQLQLLELGS--------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp CSCSEEEECT--------------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSC
T ss_pred ccCeEEeCCC--------------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcc
Confidence 4688899988 5556666 77899999999999999999975 789999999999999999999987
Q ss_pred cchh--ccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcC--CCCCEEEcCCCCCCC
Q 037325 154 IPQT--LGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL--HSFVELHLPNCNLPS 229 (598)
Q Consensus 154 ~p~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~ 229 (598)
+|.. ++++++|++|++++|.+..... ...+.++++|++|++++|.+.... +..+..+ ++|+.|++++|.+.+
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~---~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVC---EHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCC---SGGGHHHHHCSSCCCEECCSBSCC
T ss_pred cccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeC---HHHcccccCCccceEECCCCcccc
Confidence 7766 8999999999999998754322 245899999999999999998876 4566655 899999999999888
Q ss_pred CCCCCCcCCCC------CccEEEccCCCCCCCcchhhhc--------------------------------------CCC
Q 037325 230 LPLSFPSLNFA------SLQVLDLSNNDFNSTTPHWLFN--------------------------------------ITS 265 (598)
Q Consensus 230 ~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~--------------------------------------l~~ 265 (598)
..+ ..+..++ +|++|++++|.+++..+..+.. .++
T Consensus 189 ~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 189 RVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred ccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 655 3334444 3999999999877655544332 268
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
|+.|++++|.+.+..+..+..+++|+.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..++ +|
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L 340 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP------KV 340 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT------TC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC------CC
Confidence 9999999999998888889999999999999999 6777788899999999999999999988888888887 89
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++.. +. ....++.++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l--~~------~~~~l~~L~ 407 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL--PK------INLTANLIH 407 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC--CC------CCTTCCEEE
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc--cc------cccccceee
Confidence 9999999999988777899999999999999998842 3388999999999999854 32 246799999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcc-c-CCCCEEEcccCcCcccC-----C---CCCcCCcEEEc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-F-NFPAKVDLSFNNFEGRL-----L---LWSFNVTKLYL 495 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~-~-~~L~~l~ls~n~l~~~~-----~---~~~~~L~~L~l 495 (598)
+++|++.+.....+...+++|++|++++|++++..+.... . ..|+.|++++|.+.+.. + ..+++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 9999999865555554589999999999999976554322 2 38999999999997422 2 23688999999
Q ss_pred cCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEE
Q 037325 496 RDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFL 575 (598)
Q Consensus 496 s~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L 575 (598)
++|++++..|..+.. +++|+.|+|++|++++..|..+. ++|++|++++|++++..|..+. +|+.+
T Consensus 488 s~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l 552 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSH----------LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL 552 (844)
T ss_dssp CHHHHTTCCTTSSSS----------CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred CCCcccccChhHccc----------hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEE
Confidence 999999877776666 89999999999999977776665 8999999999999999987754 78999
Q ss_pred EccCCCCccc
Q 037325 576 VLRNNYLSGK 585 (598)
Q Consensus 576 ~l~~n~l~g~ 585 (598)
++++|++.+.
T Consensus 553 ~l~~Np~~C~ 562 (844)
T 3j0a_A 553 DITHNKFICE 562 (844)
T ss_dssp EEEEECCCCS
T ss_pred EecCCCcccc
Confidence 9999998763
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-45 Score=395.12 Aligned_cols=449 Identities=23% Similarity=0.180 Sum_probs=375.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|++++|.+++. .+..+.++++|++|++++|++++..|..|+++++|++|++++|.+... ....+.++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--CHhhhcCcccccc
Confidence 5799999999999965 566889999999999999999977778899999999999999875432 3345899999999
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC----CE
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL----LC 268 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~ 268 (598)
|++++|.+.... ...+..+++|++|++++|.+++......+.++++|++|++++|++++..+..+..+++| +.
T Consensus 105 L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 105 LVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp EECTTSCCCCST---TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccCC---CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 999999998875 33588999999999999999986433678889999999999999998888888888888 89
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE------------------------------
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM------------------------------ 318 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L------------------------------ 318 (598)
+++++|.+.+..+..+... +|+.|++++|......++..+..+++++.+
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 9999999997777777655 899999999863333444555555554443
Q ss_pred --ecccc-cCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCE
Q 037325 319 --ILSRN-NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKE 395 (598)
Q Consensus 319 --~l~~n-~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 395 (598)
++.++ .+.+..+..+..++ +|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~ 329 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLT------NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKR 329 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGT------TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCE
T ss_pred hhhhhcchhhhhhchhhhcCcC------cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCE
Confidence 33333 34444555555555 8999999999998 578788888 9999999999988 5554 57889999
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcccc--chHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEE
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI--SDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKV 472 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l 472 (598)
|++++|.+.+.. + ...+++|+.|++++|++++.. +..+.. +++|++|++++|.+.+..+. +... .|+.+
T Consensus 330 L~l~~n~~~~~~-~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 401 (570)
T 2z63_A 330 LTFTSNKGGNAF-S-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401 (570)
T ss_dssp EEEESCBSCCBC-C-----CCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred EeCcCCcccccc-c-----cccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEE
Confidence 999999887654 3 267899999999999998765 566655 88999999999999876555 5554 99999
Q ss_pred EcccCcCcccCC----CCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc-cccchhccCCCC
Q 037325 473 DLSFNNFEGRLL----LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS-GEIPLLFSNISF 547 (598)
Q Consensus 473 ~ls~n~l~~~~~----~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~ 547 (598)
++++|.+.+..+ ..+++|++|++++|++++..|..+.. +++|+.|++++|.++ +.+|..+..+++
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------LSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT----------CTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc----------CCcCcEEECcCCcCccccchhhhhcccC
Confidence 999999987655 23689999999999999888887776 899999999999998 679999999999
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
|++|++++|++++..|..+.++++|++|++++|++++..|..+..+++|+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 99999999999988899999999999999999999988888899888876
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-45 Score=391.76 Aligned_cols=447 Identities=17% Similarity=0.147 Sum_probs=365.6
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..|+++++|++|++++|.+...+
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 6777 4676665 8999999999999975 6788999999999999999999888999999999999999999876332
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCc--cEEEccCCCC--CC
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASL--QVLDLSNNDF--NS 254 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~ 254 (598)
. . .+++|++|++++|.+.+... +..+..+++|++|++++|.+++. .+..+++| ++|++++|.+ .+
T Consensus 86 ~----~-~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 86 C----H-PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C----C-CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred c----c-ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccc
Confidence 2 1 79999999999999987421 57899999999999999998873 34566777 9999999999 77
Q ss_pred CcchhhhcCC-CCCEEEccCCcccccCCc-cccCCCCccEEECcCCCc------CccccchhhcCCCCCCEEecccccCC
Q 037325 255 TTPHWLFNIT-SLLCLDLGSNDLQGDIPD-GFASLNSLQELDLSGNSF------LGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 255 ~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~------~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|.. ..+.++ .+..+++|+.|++++|.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 8888777765 344678888888776654 567899999999999850 123333 6788999999999999887
Q ss_pred cccchhhhCCCCCCCCCCccEEEccCccccccCcccc-----CCCCCCCEEEccCCcCCccch-hhccCC---CCCCEEe
Q 037325 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL-----GSLKNLRHLVLWQNSFLGSIP-PSIGNL---TLLKELY 397 (598)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~-~~l~~l---~~L~~L~ 397 (598)
+..+..+.... ..++|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 234 ~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 234 WNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp HHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 65443322110 01179999999999998899888 8899999999999988 455 444444 6899999
Q ss_pred CcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc--cCCCCcccC-CCCEEEc
Q 037325 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG--RVPNSLGFN-FPAKVDL 474 (598)
Q Consensus 398 l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~p~~~~~~-~L~~l~l 474 (598)
+++|.+..... ...+++|++|++++|++++..|..+.. +++|++|++++|++++ .+|..+... .|+.|++
T Consensus 309 l~~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 309 VSGTRMVHMLC------PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp EESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred cCCCccccccc------hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 99999875431 257889999999999999988877655 7899999999999986 455556555 8999999
Q ss_pred ccCcCcccCCC----CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCE
Q 037325 475 SFNNFEGRLLL----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYI 550 (598)
Q Consensus 475 s~n~l~~~~~~----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 550 (598)
++|++.+.+|. .+++|++|++++|++++.+|..+ .++|+.|++++|+++ .+|..+.++++|++
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh------------cccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 99999986664 35899999999999998777654 268999999999999 89998889999999
Q ss_pred EECCCCcCccccchh-ccCCCCCCEEEccCCCCcccCC
Q 037325 551 LDMSNNSLSGSTPES-IGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 551 L~ls~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~g~~P 587 (598)
|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 449 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 449 LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999 57765 8999999999999999987544
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=376.40 Aligned_cols=440 Identities=18% Similarity=0.160 Sum_probs=363.2
Q ss_pred CEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEc
Q 037325 116 EYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNL 195 (598)
Q Consensus 116 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 195 (598)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+... ....+.++++|++|++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence 57999999999 5787665 8999999999999988888999999999999999876533 3356899999999999
Q ss_pred CCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC--CEEEccC
Q 037325 196 GGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL--LCLDLGS 273 (598)
Q Consensus 196 ~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~ 273 (598)
++|.+.... .. .+++|++|++++|.+++.+....+..+++|++|++++|++++ ..+..+++| +.|++++
T Consensus 77 s~N~l~~lp----~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 77 SHNKLVKIS----CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CSSCCCEEE----CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CCCceeecC----cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999998653 33 899999999999999986544678899999999999999986 346677778 9999999
Q ss_pred Ccc--cccCCccccCCC-CccEEECcCCCcCccccchhhcCCCCCCEEeccccc-------CCcccchhhhCCCCCCCCC
Q 037325 274 NDL--QGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNN-------ISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 274 n~l--~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~~~~~~ 343 (598)
|.+ .+..|..+..+. +...+++++|.+.....+..+..+++|+.+++++|. +.+..+ .+..++
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~------ 220 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP------ 220 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT------
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc------
Confidence 999 777787777665 345678888885554555677889999999999987 554444 455555
Q ss_pred CccEEEccCccccccCccccC---CCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCC-Cchhh
Q 037325 344 LLEKLELRFNQFTGILPISLG---SLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKIS-DSYQH 414 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~~~~ 414 (598)
+|+.|++++|.+.+..+..+. ..++|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .. | ..+..
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~-p~~~~~~ 297 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF-PQSYIYE 297 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS-CTHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec-chhhhhc
Confidence 899999999988754332221 24699999999999999999888 8999999999999998 23 4 33333
Q ss_pred hcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc--cCC---CCCc
Q 037325 415 LKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG--RLL---LWSF 488 (598)
Q Consensus 415 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~--~~~---~~~~ 488 (598)
+....+|+.|++++|.+...... ..+++|++|++++|++++.+|..+... .|+.|++++|++.+ .+| ..++
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred ccccCceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence 33446899999999998764421 247899999999999999889888776 99999999999997 444 3478
Q ss_pred CCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 489 NVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
+|++|++++|++++.+|.. +.. +++|+.|++++|.+++.+|..+. ++|++|++++|+++ .+|..+.
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSW----------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCC----------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred CCCEEECCCCcCCcccccchhcc----------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 9999999999999867765 333 79999999999999988988775 89999999999999 8999888
Q ss_pred CCCCCCEEEccCCCCcccCCcC-ccCcCCCC
Q 037325 568 SLRTVKFLVLRNNYLSGKLPLS-LKNCTFQE 597 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P~~-~~~~~~L~ 597 (598)
.+++|++|++++|+++ .+|.. +..+++|+
T Consensus 442 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 442 KLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp GCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 9999999999999999 68876 88887775
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-42 Score=372.35 Aligned_cols=462 Identities=18% Similarity=0.155 Sum_probs=363.6
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ .+|..+. ++|++|++++|++++. .|..+.++++|++|++++|++++..|..|+.+++|++|++++|.+...
T Consensus 15 ~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 89 (549)
T 2z81_A 15 RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL- 89 (549)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-
T ss_pred Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-
Confidence 4554 4555553 7999999999999865 677899999999999999999987788899999999999999876543
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCC-CCCCCCCCCcCCCCCccEEEccCCCCCCCcc
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN-LPSLPLSFPSLNFASLQVLDLSNNDFNSTTP 257 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 257 (598)
....+.++++|++|++++|.+..... +..+.++++|++|++++|. +..++. ..+..+++|++|++++|.+++..|
T Consensus 90 -~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 90 -SSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp -CHHHHTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT
T ss_pred -CHHHhccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccccCh
Confidence 33458899999999999999986431 4578899999999999998 455444 567889999999999999999899
Q ss_pred hhhhcCCCCCEEEccCCcccccCCcc-ccCCCCccEEECcCCCcCcccc--c-hhhcCCCCCCEEecccccCCcccchhh
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQL--S-RNLGKLCNLRTMILSRNNISSEVSDFL 333 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~ 333 (598)
..+..+++|++|+++.|.+. .+|.. +..+++|++|++++|.+ .+.. + .....+++|+.|++++|.+.+..+..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 99999999999999999876 34443 35689999999999984 3321 1 223457899999999999887665544
Q ss_pred hCCCCCCCCCCccEEEccCccccccC------ccccCCCCCCCEEEccCCcCCcc-----chhhccCCCCCCEEeCcCCc
Q 037325 334 DGLSECTNSILLEKLELRFNQFTGIL------PISLGSLKNLRHLVLWQNSFLGS-----IPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 334 ~~l~~~~~~~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~ls~n~l~~~-----~~~~l~~l~~L~~L~l~~n~ 402 (598)
.... ..+.+|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|++|++++|.
T Consensus 244 ~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 244 LKLL--RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HGGG--GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHh--hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 3221 11227999999999887532 12346778999999999877542 22223445789999999999
Q ss_pred CCcccCCCchhhhcCCCCCCEEEccCccCccccchHH--HhcCCCCCEEEccCCcCcccCC--CCcccC-CCCEEEcccC
Q 037325 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF--WQLSLTLDELDVAYNELRGRVP--NSLGFN-FPAKVDLSFN 477 (598)
Q Consensus 403 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~p--~~~~~~-~L~~l~ls~n 477 (598)
+... |.. .+..+++|++|++++|++++..|... ...+++|++|++++|++++..+ ..+... .|+.|++++|
T Consensus 322 l~~i--p~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 322 VFLV--PCS--FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCCC--CHH--HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cccC--CHH--HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 8743 422 23578999999999999998765432 2347899999999999986432 234444 8999999999
Q ss_pred cCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 478 NFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 478 ~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
+++ .+|.. +++|++|++++|+++ .+|..+ .++|++|++++|++++.+ +++++|++|+++
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh------------cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 998 45553 578999999999998 455443 368999999999999643 578999999999
Q ss_pred CCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 555 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+
T Consensus 460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 99999 7887 57899999999999999998888899888875
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.8e-45 Score=395.35 Aligned_cols=435 Identities=19% Similarity=0.226 Sum_probs=339.1
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCC------c------ccchhccCCCCCCEEEccCCCCCCCccC
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS------G------TIPQTLGNLSNLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 180 (598)
.+++.|+|+++.+.|. +|..++++++|++|+|++|.+. + .+|... +.+|+ ++++++.......
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~- 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPR- 155 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGG-
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCch-
Confidence 4678899999999886 8889999999999999998652 2 233322 23333 4444432221111
Q ss_pred hhhhc-CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcC--CCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--
Q 037325 181 LEWLS-GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP--NCNLPSLPLSFPSLNFASLQVLDLSNNDFNST-- 255 (598)
Q Consensus 181 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~--~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 255 (598)
..+. .+..+..+++....+.. .....++.+.+. .|.++++| ..++++++|++|++++|.+++.
T Consensus 156 -~~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~~~ 223 (636)
T 4eco_A 156 -EDFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITFVS--KAVMRLTKLRQFYMGNSPFVAENI 223 (636)
T ss_dssp -GGSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEEEC--GGGGGCTTCCEEEEESCCCCGGGB
T ss_pred -hhHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCccCC--HHHhcccCCCEEECcCCccccccc
Confidence 0000 00111111111111100 011122222222 45677744 4688999999999999999986
Q ss_pred ---------------cchhhh--cCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-ccchhhcCC-----
Q 037325 256 ---------------TPHWLF--NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-QLSRNLGKL----- 312 (598)
Q Consensus 256 ---------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l----- 312 (598)
+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|..+.+ .+|..++.+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 888888 999999999999999999999999999999999999983455 788888776
Q ss_pred -CCCCEEecccccCCcccch--hhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccC
Q 037325 313 -CNLRTMILSRNNISSEVSD--FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389 (598)
Q Consensus 313 -~~L~~L~l~~n~l~~~~~~--~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 389 (598)
++|++|++++|+++ .+|. .+..++ +|++|++++|.++|.+| .++.+++|++|++++|++. .+|..+..
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~------~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 374 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMK------KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG 374 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCT------TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCC------CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh
Confidence 99999999999999 6776 788887 89999999999998899 8899999999999999999 88888999
Q ss_pred CCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh------cCCCCCEEEccCCcCcccCCC
Q 037325 390 LTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ------LSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 390 l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+++ |++|++++|.++. + |..+ ....+++|+.|++++|++++..|..+.. .+++|++|++++|+++ .+|.
T Consensus 375 l~~~L~~L~Ls~N~l~~-l-p~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 450 (636)
T 4eco_A 375 FTEQVENLSFAHNKLKY-I-PNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK 450 (636)
T ss_dssp ECTTCCEEECCSSCCSS-C-CSCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT
T ss_pred hcccCcEEEccCCcCcc-c-chhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH
Confidence 999 9999999999984 3 5432 1123458999999999999988876651 2568999999999999 5665
Q ss_pred Cccc--CCCCEEEcccCcCcccCCCC-Cc----------CCcEEEccCCcccccCCchhh--cccCCCCCccccCCCCeE
Q 037325 463 SLGF--NFPAKVDLSFNNFEGRLLLW-SF----------NVTKLYLRDNSFSGLIPNDIG--QNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 463 ~~~~--~~L~~l~ls~n~l~~~~~~~-~~----------~L~~L~ls~n~l~~~~p~~~~--~~~~~~~~~~~l~~L~~L 527 (598)
.+.. ..|+.|++++|+++ .+|.. +. +|++|++++|+++ .+|..+. . +++|+.|
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~----------l~~L~~L 518 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT----------LPYLVGI 518 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT----------CTTCCEE
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc----------CCCcCEE
Confidence 5433 38999999999999 55554 22 8999999999999 7888876 5 8999999
Q ss_pred eCcCCccccccchhccCCCCCCEEEC------CCCcCccccchhccCCCCCCEEEccCCCCcccCCcCcc
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDM------SNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
+|++|++++ +|..++++++|++|++ ++|++.+.+|..+.++++|++|++++|++ +.+|..+.
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 999999997 9999999999999999 56788999999999999999999999999 69998765
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-42 Score=372.75 Aligned_cols=455 Identities=19% Similarity=0.138 Sum_probs=357.3
Q ss_pred EEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchh
Q 037325 78 IKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQT 157 (598)
Q Consensus 78 ~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 157 (598)
+.+|+++ +++++ +|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..
T Consensus 34 ~~l~ls~--------------~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 34 SMVDYSN--------------RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp CEEECTT--------------SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred cEEEcCC--------------CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 6788887 67775 666554 8999999999999975 6678999999999999999999877899
Q ss_pred ccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcC
Q 037325 158 LGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSL 237 (598)
Q Consensus 158 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 237 (598)
|.++++|++|++++|.+...+.. .+++|++|++++|.+..... +..+.++++|++|++++|.++... +.
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~~----~~ 164 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLD----LL 164 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTTT----TG
T ss_pred hCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccCc----hh
Confidence 99999999999999987633321 79999999999999987532 478999999999999999998743 33
Q ss_pred CCCCc--cEEEccCCCC--CCCcchhhhcCC-CCCEEEccCCcccccCCc-cccCCCCccEEECcCCCcCc---cccchh
Q 037325 238 NFASL--QVLDLSNNDF--NSTTPHWLFNIT-SLLCLDLGSNDLQGDIPD-GFASLNSLQELDLSGNSFLG---GQLSRN 308 (598)
Q Consensus 238 ~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~---~~~~~~ 308 (598)
.+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.... ......
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 44555 9999999999 888888777665 222567888888776654 45678999999999985211 122345
Q ss_pred hcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc-----CCCCCCCEEEccCCcCCccc
Q 037325 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL-----GSLKNLRHLVLWQNSFLGSI 383 (598)
Q Consensus 309 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~ 383 (598)
+..+++|+.+++.++.+.+.....+.... ...+|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~ 319 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF 319 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS
T ss_pred HhccCcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec
Confidence 77889999999998887764332211110 01179999999999998888877 6677777777777776 33
Q ss_pred h-hhcc---CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCccc
Q 037325 384 P-PSIG---NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGR 459 (598)
Q Consensus 384 ~-~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 459 (598)
| ..+. ...+|++|++++|.+..... ...+++|++|++++|++++..|..+.. +++|++|++++|++++.
T Consensus 320 p~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 320 SKEALYSVFAEMNIKMLSISDTPFIHMVC------PPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNF 392 (562)
T ss_dssp CHHHHHHHHHTCCCSEEEEESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBT
T ss_pred ChhhhhhhhccCcceEEEccCCCcccccC------ccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCc
Confidence 4 2222 23679999999998864431 257889999999999999877777655 78999999999999863
Q ss_pred --CCCCcccC-CCCEEEcccCcCcccCCCC----CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCC
Q 037325 460 --VPNSLGFN-FPAKVDLSFNNFEGRLLLW----SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532 (598)
Q Consensus 460 --~p~~~~~~-~L~~l~ls~n~l~~~~~~~----~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N 532 (598)
+|..+... .|+.+++++|++.+.+|.. +++|++|++++|++++.+|..+ .++|+.|+|++|
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------~~~L~~L~L~~N 460 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------PPKVKVLDLHNN 460 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC------------CTTCSEEECCSS
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh------------cCcCCEEECCCC
Confidence 34445554 8999999999998866643 5889999999999988776543 158999999999
Q ss_pred ccccccchhccCCCCCCEEECCCCcCccccchh-ccCCCCCCEEEccCCCCcccCC
Q 037325 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPES-IGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 533 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++ .+|..+.++++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 461 ~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 461 RIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 998 88888889999999999999999 57766 8999999999999999987544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-41 Score=366.90 Aligned_cols=460 Identities=20% Similarity=0.122 Sum_probs=314.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
..+++|||++ |.+++..+.+|.++++|++|+|++|+++++ .|..|.++++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~--------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeC--------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4678888888 788887778899999999999999998854 4567888999999999999988655
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
+..|.++++|++|++++|.+.... ...++++++|++|++++|.+..... +..+..+++|++|++++|.+++..+ .
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-~ 191 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQSIYC-T 191 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCEECG-G
T ss_pred HHHhcCCCCCCEEECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCC--chhhccchhhhhhcccCcccccccc-c
Confidence 567888999999999988765432 2347888899999999998876532 5677888899999999998887654 2
Q ss_pred CcCCCCC----ccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC-Cccc-------------------------
Q 037325 235 PSLNFAS----LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI-PDGF------------------------- 284 (598)
Q Consensus 235 ~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l------------------------- 284 (598)
.+..+.+ ...++++.|.++...+..+ ....++.+++.+|...... +..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 2222222 3356666666654333222 2222334444433221100 0011
Q ss_pred --------------------------------cCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchh
Q 037325 285 --------------------------------ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF 332 (598)
Q Consensus 285 --------------------------------~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 332 (598)
....+++.+.+.++.+ .. ...+.....++.|++.+|.+.......
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ER--VKDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EE--CGGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-cc--ccccccchhhhhhhcccccccCcCccc
Confidence 1122233333333321 10 112333445555555555544332221
Q ss_pred hhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCcCCcccCCC
Q 037325 333 LDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQMNGQKISD 410 (598)
Q Consensus 333 ~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 410 (598)
+. .|+.+++..|.+... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.+....
T Consensus 348 ---l~------~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--- 413 (635)
T 4g8a_A 348 ---LK------SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--- 413 (635)
T ss_dssp ---CT------TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---
T ss_pred ---ch------hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---
Confidence 11 455666666655432 233456778888888777643 34455667777888888777665433
Q ss_pred chhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc-cCCC---
Q 037325 411 SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG-RLLL--- 485 (598)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~-~~~~--- 485 (598)
..+..+++|+.+++.++......+...+..+..++.++++.|.+.+..+..+... .++.+++++|.+.+ ..|.
T Consensus 414 --~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 414 --SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp --SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred --ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 2356778888888888887666655545557888999999999988887777665 88999999987554 3333
Q ss_pred CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchh
Q 037325 486 WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565 (598)
Q Consensus 486 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 565 (598)
.+++|++|||++|++++..|..+.. +++|++|+|++|++++..|..|+++++|++|||++|++++..|..
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNS----------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hccccCEEECCCCccCCcChHHHcC----------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 3578999999999999877877776 889999999999999888888999999999999999999888888
Q ss_pred ccCC-CCCCEEEccCCCCcc
Q 037325 566 IGSL-RTVKFLVLRNNYLSG 584 (598)
Q Consensus 566 l~~l-~~L~~L~l~~n~l~g 584 (598)
+..+ ++|++|++++|+++.
T Consensus 562 l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCC
T ss_pred HHhhhCcCCEEEeeCCCCcc
Confidence 8887 689999999998863
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-41 Score=352.81 Aligned_cols=399 Identities=22% Similarity=0.188 Sum_probs=251.3
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCC-------------CEEEccCCCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL-------------LYLDLNNFLDQSN 177 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~~~~~ 177 (598)
+.++|++|++++|.+ + .+|..++++++|++|++++|++.|.+|..++++++| ++|++++|.+...
T Consensus 9 ~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 457888999999988 4 488888999999999999998888889888888764 8888888776543
Q ss_pred ccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc
Q 037325 178 QIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP 257 (598)
Q Consensus 178 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 257 (598)
+. -.++|++|++++|.+.+.. . ..++|++|++++|.+++++.. .++|++|++++|++++ +|
T Consensus 87 p~------~~~~L~~L~l~~n~l~~lp----~---~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 87 PE------LPPHLESLVASCNSLTELP----E---LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CS------CCTTCSEEECCSSCCSSCC----C---CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CC
T ss_pred CC------CcCCCCEEEccCCcCCccc----c---ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-Cc
Confidence 22 1367888888888888753 2 237888999999888876541 1688999999998886 56
Q ss_pred hhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (598)
.+.++++|++|++++|++++ +|..+ ++|++|++++|.+ .+ +| .++.+++|++|++++|.+.+. |... .
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l-~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~~---~ 215 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQL-EE-LP-ELQNLPFLTAIYADNNSLKKL-PDLP---L 215 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCC-SS-CC-CCTTCTTCCEEECCSSCCSSC-CCCC---T
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcC-Cc-Cc-cccCCCCCCEEECCCCcCCcC-CCCc---C
Confidence 48888899999999998874 55433 5888999999884 43 55 578888999999998888763 2211 2
Q ss_pred CCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcC
Q 037325 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKN 417 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 417 (598)
+|++|++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|++|++++|.+++. +. .
T Consensus 216 ------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l--~~------~ 275 (454)
T 1jl5_A 216 ------SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL--PE------L 275 (454)
T ss_dssp ------TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC--CC------C
T ss_pred ------cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc--Cc------c
Confidence 6889999998887 566 47888889999999988874 443 247888999999888763 32 1
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccC
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~ 497 (598)
.++|+.|++++|++++.. . ..++|++|++++|++++. +.. ...++.+++++|++++ +|..+++|++|++++
T Consensus 276 ~~~L~~L~ls~N~l~~l~-~----~~~~L~~L~l~~N~l~~i-~~~--~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLS-E----LPPNLYYLNASSNEIRSL-CDL--PPSLEELNVSNNKLIE-LPALPPRLERLIASF 346 (454)
T ss_dssp CTTCCEEECCSSCCSEES-C----CCTTCCEEECCSSCCSEE-CCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred cCcCCEEECcCCccCccc-C----cCCcCCEEECcCCcCCcc-cCC--cCcCCEEECCCCcccc-ccccCCcCCEEECCC
Confidence 367889999998887632 1 135788899998888762 211 1268888888888886 677778888888888
Q ss_pred CcccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc--ccchhccCC-------------CCCCEEECCCCcCcc--
Q 037325 498 NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG--EIPLLFSNI-------------SFLYILDMSNNSLSG-- 560 (598)
Q Consensus 498 n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~ls~N~l~~-- 560 (598)
|+++ .+|. . +++|++|++++|++++ .+|.+++++ ++|++|++++|++++
T Consensus 347 N~l~-~lp~---~----------l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 347 NHLA-EVPE---L----------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412 (454)
T ss_dssp SCCS-CCCC---C----------CTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred Cccc-cccc---h----------hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence 8887 4665 2 5788888888888887 678777766 566677777776665
Q ss_pred ccchhccCCCCCCEEEccCCCCcccCCcCcc
Q 037325 561 STPESIGSLRTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
.+|.+ ++.|++.+|.+.+.+|....
T Consensus 413 ~iP~s------l~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 413 DIPES------VEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -------------------------------
T ss_pred cchhh------HhheeCcCcccCCccccCHH
Confidence 45532 44555666666666655443
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-41 Score=372.31 Aligned_cols=337 Identities=20% Similarity=0.236 Sum_probs=288.0
Q ss_pred CCCCCCCCCCCcCCCCCccEEEccCCCCCC-----------------Ccchhhh--cCCCCCEEEccCCcccccCCcccc
Q 037325 225 CNLPSLPLSFPSLNFASLQVLDLSNNDFNS-----------------TTPHWLF--NITSLLCLDLGSNDLQGDIPDGFA 285 (598)
Q Consensus 225 ~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~ 285 (598)
|.++++| ..+.++++|++|++++|++++ .+|..+. ++++|+.|++++|.+.+.+|..+.
T Consensus 435 N~L~~IP--~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITFIS--KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEEEC--GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccchh--HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 5666654 468899999999999999998 3888877 999999999999999999999999
Q ss_pred CCCCccEEECcCCCcCcc-ccchhhcCCC-------CCCEEecccccCCcccch--hhhCCCCCCCCCCccEEEccCccc
Q 037325 286 SLNSLQELDLSGNSFLGG-QLSRNLGKLC-------NLRTMILSRNNISSEVSD--FLDGLSECTNSILLEKLELRFNQF 355 (598)
Q Consensus 286 ~l~~L~~L~l~~n~~~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~~~~~~~L~~L~Ls~n~l 355 (598)
++++|+.|++++|+++.+ .+|..++.++ +|++|++++|.+. .+|. .+..++ +|++|++++|.+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~------~L~~L~Ls~N~l 585 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV------KLGLLDCVHNKV 585 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT------TCCEEECTTSCC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC------CCCEEECCCCCc
Confidence 999999999999983455 6787666554 9999999999999 6776 788888 899999999999
Q ss_pred cccCccccCCCCCCCEEEccCCcCCccchhhccCCCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccc
Q 037325 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDT 434 (598)
Q Consensus 356 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 434 (598)
+ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++. + |..+. ....++|+.|++++|++.+.
T Consensus 586 ~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l-p~~~~-~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 586 R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I-PNIFN-AKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C-CSCCC-TTCSSCEEEEECCSSCTTTT
T ss_pred c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C-chhhh-ccccCCCCEEECcCCcCCCc
Confidence 8 788 8999999999999999999 88888999999 9999999999983 3 54321 12234599999999999987
Q ss_pred cchHHHh----cCCCCCEEEccCCcCcccCCCCcc-c-CCCCEEEcccCcCcccCCCCC-----------cCCcEEEccC
Q 037325 435 ISDWFWQ----LSLTLDELDVAYNELRGRVPNSLG-F-NFPAKVDLSFNNFEGRLLLWS-----------FNVTKLYLRD 497 (598)
Q Consensus 435 ~~~~~~~----~~~~L~~L~ls~n~~~~~~p~~~~-~-~~L~~l~ls~n~l~~~~~~~~-----------~~L~~L~ls~ 497 (598)
+|..... ..++|++|++++|+++ .+|..+. . ..|+.|++++|++. .+|... ++|+.|+|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 6643211 1348999999999999 5666554 3 38999999999998 555532 2899999999
Q ss_pred CcccccCCchhh--cccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCC------CcCccccchhccCC
Q 037325 498 NSFSGLIPNDIG--QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSN------NSLSGSTPESIGSL 569 (598)
Q Consensus 498 n~l~~~~p~~~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~p~~l~~l 569 (598)
|+++ .+|..+. . +++|+.|+|++|.+++ +|..++++++|+.|+|++ |++.+.+|..+.++
T Consensus 738 N~L~-~lp~~l~~~~----------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 738 NKLT-SLSDDFRATT----------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp SCCC-CCCGGGSTTT----------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCCc-cchHHhhhcc----------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 9999 8888876 5 8999999999999996 899999999999999977 88899999999999
Q ss_pred CCCCEEEccCCCCcccCCcCcc
Q 037325 570 RTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
++|+.|++++|++ +.+|..+.
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCEEECCCCCC-CccCHhhc
Confidence 9999999999999 79999765
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-40 Score=352.77 Aligned_cols=445 Identities=18% Similarity=0.170 Sum_probs=348.8
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
+...+++++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.. .....+.++++|+
T Consensus 30 ~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCC
Confidence 344589999999999 4787654 899999999999997777899999999999999987653 3335589999999
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC--CEE
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL--LCL 269 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L 269 (598)
+|++++|.+.... .. .+++|++|++++|.+++.+....+.++++|++|++++|++++.. +..+++| +.|
T Consensus 104 ~L~Ls~N~l~~lp----~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L 174 (562)
T 3a79_B 104 YLDVSHNRLQNIS----CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCI 174 (562)
T ss_dssp EEECTTSCCCEEC----SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEE
T ss_pred EEECCCCcCCccC----cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEE
Confidence 9999999998653 23 79999999999999998765467889999999999999998643 4445555 999
Q ss_pred EccCCcc--cccCCccccCCC-CccEEECcCCCcCccccchhhcCCCCCCEEecccccCC----cccchhhhCCCCCCCC
Q 037325 270 DLGSNDL--QGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS----SEVSDFLDGLSECTNS 342 (598)
Q Consensus 270 ~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~~~~~ 342 (598)
++++|.+ ++..|..+..+. ..-.+++++|.+........+..+++|+.+++++|+.. ......+..++
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~----- 249 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP----- 249 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-----
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC-----
Confidence 9999999 777787777654 22256888888544334455678889999999988521 11123345555
Q ss_pred CCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCC-Cch
Q 037325 343 ILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKIS-DSY 412 (598)
Q Consensus 343 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~~ 412 (598)
.++.+++.++.+.+. ++..+ ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .. | ..+
T Consensus 250 -~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~-p~~~~ 324 (562)
T 3a79_B 250 -TLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF-SKEAL 324 (562)
T ss_dssp -SCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS-CHHHH
T ss_pred -cceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec-Chhhh
Confidence 788888887766543 22222 23599999999999998898877 6666666677777766 22 3 223
Q ss_pred hhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc--cCC---CC
Q 037325 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG--RLL---LW 486 (598)
Q Consensus 413 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~--~~~---~~ 486 (598)
..+....+|+.|++++|.+...... ..+++|++|++++|++++.+|..+... .|+.+++++|++++ .+| ..
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT
T ss_pred hhhhccCcceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC
Confidence 3333447899999999998654321 237899999999999999889888776 99999999999997 323 34
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|++|++++|++++.+|.... ..+++|+.|++++|.+++.+|..+. ++|++|++++|+++ .+|..+
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTC---------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCC---------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred CCCCCEEECCCCcCCCccChhhh---------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 78999999999999986776522 2389999999999999988887765 79999999999999 799888
Q ss_pred cCCCCCCEEEccCCCCcccCCcC-ccCcCCCC
Q 037325 567 GSLRTVKFLVLRNNYLSGKLPLS-LKNCTFQE 597 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g~~P~~-~~~~~~L~ 597 (598)
..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 470 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 470 THLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp TSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 89999999999999999 68877 88888775
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.3e-39 Score=350.84 Aligned_cols=466 Identities=23% Similarity=0.168 Sum_probs=332.6
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
.+|..+. +++++|||++|+|+.. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+.. .....
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~ 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGA 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHH
Confidence 3555443 5899999999999964 45689999999999999999996667789999999999999987643 33456
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
|.++++|++|++++|.++... +..|.++++|++|++++|.++.......+..+++|++|++++|++++..+..+..+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCST---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hcCCCCCCEEECCCCcCCCCC---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 899999999999999999875 45689999999999999999887655677889999999999999998888777665
Q ss_pred CC----CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCC-------------
Q 037325 264 TS----LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS------------- 326 (598)
Q Consensus 264 ~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~------------- 326 (598)
++ ...++++.|.+....+. ......++.+++.+|.......+..+..++.++...+..+...
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 44 34788999988754443 3344567778888775322223333444444443333211100
Q ss_pred -----------------ccc---chhhhCCC----------------CCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 327 -----------------SEV---SDFLDGLS----------------ECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 327 -----------------~~~---~~~~~~l~----------------~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
... ...+.... .......++.|++.+|.+.+..+ ..++.|+
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~ 352 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLK 352 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCC
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhh
Confidence 000 00001111 00111245555555555543222 2344556
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
.+++..|...... ....+++|+.+++++|.+....... .......+|+.+++..+.+....+. +.. ++.|+.++
T Consensus 353 ~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~--~~~~~~~~L~~L~~~~~~~~~~~~~-~~~-l~~L~~l~ 426 (635)
T 4g8a_A 353 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTISLKYLDLSFNGVITMSSN-FLG-LEQLEHLD 426 (635)
T ss_dssp EEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC--HHHHSCSCCCEEECCSCSEEEECSC-CTT-CTTCCEEE
T ss_pred hcccccccCCCCc--ccccccccccchhhccccccccccc--cchhhhhhhhhhhcccccccccccc-ccc-cccccchh
Confidence 6666665544222 2345677888888877765432111 2345667788888877776543332 222 67788888
Q ss_pred ccCCcCcccCCCCc-ccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc-ccCCchhhcccCCCCCccccCCC
Q 037325 451 VAYNELRGRVPNSL-GFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS-GLIPNDIGQNLPFLTDLGNLKQL 524 (598)
Q Consensus 451 ls~n~~~~~~p~~~-~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~-~~~p~~~~~~~~~~~~~~~l~~L 524 (598)
++.+......+... ... .++.+++++|.+.+..+.. +++++.|++++|++. +..|..+.. +++|
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------l~~L 496 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------LRNL 496 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------CTTC
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------cccc
Confidence 88887766555432 333 7889999999988766554 578999999999754 345655655 8999
Q ss_pred CeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCc-CCCC
Q 037325 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC-TFQE 597 (598)
Q Consensus 525 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~-~~L~ 597 (598)
+.|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|++++|++++..|+.+..+ ++|+
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999999998899999999999999999999998889999999999999999999999999998877 5664
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-41 Score=331.29 Aligned_cols=292 Identities=32% Similarity=0.491 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEEcCCCCCCCCCCcccCCCCCcce--
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCS--WSGVSCNNRT--ASVIKLNLNNPFRDSFGSFEDDAGHELGG-- 103 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l~~-- 103 (598)
.|.++|++||++||+++.+|. .+.+| .+.+||. |.||+|+... ++|++|+|++ +++.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------------~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC--------------CCccCCc
Confidence 599999999999999998776 68899 5678998 9999998655 8999999998 78888
Q ss_pred ecCccccCCCCCCEEeCCC-CCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 104 EISPSLLQLKDLEYLDLSM-NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
.+|..+.++++|++|++++ |.+.+. +|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------- 138 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------- 138 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred ccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence 8999999999999999995 888886 8999999999999999999999888888888888877777765432
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhc
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN 262 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 262 (598)
+.. +..+. .+++|++|++++|++++.+|..+..
T Consensus 139 -------------------~~~---p~~~~-------------------------~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 139 -------------------GTL---PPSIS-------------------------SLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp -------------------SCC---CGGGG-------------------------GCTTCCEEECCSSCCEEECCGGGGC
T ss_pred -------------------CcC---ChHHh-------------------------cCCCCCeEECcCCcccCcCCHHHhh
Confidence 111 22232 3344555555555555555555555
Q ss_pred CC-CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 263 IT-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 263 l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
++ +|++|++++|.+++.+|..+..++ |++|++++|. +.+..|..+..+++|++|++++|.+++..+. +..++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~---- 244 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK---- 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT----
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC----
Confidence 55 566666666666655665555554 6666666666 4445555666666666666666666554443 33333
Q ss_pred CCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCc
Q 037325 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 402 (598)
+|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 245 --~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 --NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp --TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred --CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6777777777776666766777777777777777777666654 666677777777765
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-40 Score=345.59 Aligned_cols=407 Identities=20% Similarity=0.203 Sum_probs=272.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCC-------------C
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKEL-------------R 141 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~ 141 (598)
.+++++++++ +.+ |.+|.+++++++|++|++++|.+.+. +|..++++++| +
T Consensus 11 ~~L~~L~l~~--------------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~ 74 (454)
T 1jl5_A 11 TFLQEPLRHS--------------SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAH 74 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred ccchhhhccc--------------Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCC
Confidence 4677888887 788 89999999999999999999999886 99999988764 9
Q ss_pred EEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEE
Q 037325 142 YLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221 (598)
Q Consensus 142 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 221 (598)
+|++++|++++ +|.. .++|++|++++|.+...+. ..++|++|++++|.+.+.... .++|++|+
T Consensus 75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~ 137 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL-------PPLLEYLG 137 (454)
T ss_dssp EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC-------CTTCCEEE
T ss_pred EEEecCCcccc-CCCC---cCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC-------CCCCCEEE
Confidence 99999999984 5552 4789999999998765332 248999999999999875321 26999999
Q ss_pred cCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcC
Q 037325 222 LPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301 (598)
Q Consensus 222 l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (598)
+++|.+++++ .+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|.+
T Consensus 138 L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l- 207 (454)
T 1jl5_A 138 VSNNQLEKLP---ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL- 207 (454)
T ss_dssp CCSSCCSSCC---CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC-
T ss_pred CcCCCCCCCc---ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC-
Confidence 9999999865 37889999999999999986 4543 3589999999999986 56 589999999999999994
Q ss_pred ccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc
Q 037325 302 GGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381 (598)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 381 (598)
.+ +|.. .++|++|++++|.+. ..|. +..++ +|++|++++|++++ +|. .+++|+.|++++|++.+
T Consensus 208 ~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~------~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 208 KK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLP------FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCT------TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred Cc-CCCC---cCcccEEECcCCcCC-cccc-cCCCC------CCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence 33 4433 258999999999988 4443 66666 89999999999985 453 34899999999999985
Q ss_pred cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCC
Q 037325 382 SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461 (598)
Q Consensus 382 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p 461 (598)
+|.. .++|++|++++|.+++.. . -.++|+.|++++|++++.. . ..++|++|++++|++++ +|
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~l~--~------~~~~L~~L~l~~N~l~~i~-~----~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSGLS--E------LPPNLYYLNASSNEIRSLC-D----LPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSEES--C------CCTTCCEEECCSSCCSEEC-C----CCTTCCEEECCSSCCSC-CC
T ss_pred -cCcc---cCcCCEEECcCCccCccc--C------cCCcCCEEECcCCcCCccc-C----CcCcCCEEECCCCcccc-cc
Confidence 5543 478999999999998742 1 1268999999999998632 1 23589999999999996 56
Q ss_pred CCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc--cCCchhhccc-----CCCCCccccCCCCeEeCcCCcc
Q 037325 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG--LIPNDIGQNL-----PFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 462 ~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~--~~p~~~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
..+ ..++.+++++|++++ +|..+++|++|++++|++++ .+|..++.+. +.+|. .+++|+.|++++|.+
T Consensus 334 ~~~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~--~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 334 ALP--PRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE--LPQNLKQLHVETNPL 408 (454)
T ss_dssp CCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred ccC--CcCCEEECCCCcccc-ccchhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc--ccCcCCEEECCCCcC
Confidence 542 479999999999985 66678899999999999998 7888877631 22222 237899999999999
Q ss_pred cc--ccchhccCCCCCCEEECCCCcCccccchhccCC
Q 037325 535 SG--EIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569 (598)
Q Consensus 535 ~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l 569 (598)
++ .+|. +++.|.+.+|.+.+.+|......
T Consensus 409 ~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 409 REFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp -------------------------------------
T ss_pred Cccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 97 6774 46777899999988877665544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-38 Score=332.56 Aligned_cols=362 Identities=18% Similarity=0.147 Sum_probs=202.9
Q ss_pred CCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCC
Q 037325 138 KELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 217 (598)
++|++|++++|.+++..|..|+++++|++|++++|....... +..|..+++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~----------------------------~~~~~~l~~L 81 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR----------------------------NNTFRGLSSL 81 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC----------------------------TTTTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC----------------------------cccccccccC
Confidence 456666666666654445555555555555555443211000 1222233333
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchh--hhcCCCCCEEEccCCcccccCCcc-ccCCCCccEEE
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW--LFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELD 294 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~ 294 (598)
++|++++|.+++..+ ..+.++++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +..+++|++|+
T Consensus 82 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 82 IILKLDYNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEEECTTCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CEEeCCCCccCccCh-hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 333333333333322 33445566666666666665544333 555566666666666655444443 45555555555
Q ss_pred CcCCCcCccccchhhcCC--CCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccc--------cC
Q 037325 295 LSGNSFLGGQLSRNLGKL--CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS--------LG 364 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~--------l~ 364 (598)
+++|. +.+..+..+..+ + .++.|++++|.+.+..+.. +.
T Consensus 161 L~~n~-l~~~~~~~l~~l~~~------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 161 LTFNK-VKSICEEDLLNFQGK------------------------------HFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp CTTCC-BSCCCTTTSGGGTTC------------------------------EEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred CCCCc-ccccChhhhhccccc------------------------------cccccccccCcccccchhhcccccccccc
Confidence 55555 333334333332 3 3555555555554332222 22
Q ss_pred CCCCCCEEEccCCcCCccchhhccCC---CCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNL---TLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ 441 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 441 (598)
.+++|++|++++|++.+..|..+... ++|+.|++++|...+..... +.+.+..+..+..
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 271 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH------------------TNFKDPDNFTFKG 271 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC------------------CSSCCCCTTTTGG
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch------------------hhhccCccccccc
Confidence 34556666666666665555544332 56666666666544322000 0000000000000
Q ss_pred -cCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 442 -LSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 442 -~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
..++|++|++++|.+++..|..+... .|+.|++++|++.+..+.. +++|++|++++|++++..|..+..
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 345 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------ 345 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT------
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC------
Confidence 02344555555555554444444433 4555555555555443332 568888899999888776777766
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++|+|++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 346 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 ----LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ----cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8899999999999988888889999999999999999997666677889999999999999998887
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-38 Score=331.41 Aligned_cols=383 Identities=22% Similarity=0.243 Sum_probs=220.8
Q ss_pred CCCCccc--EEecCCC--------CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc
Q 037325 61 DCCSWSG--VSCNNRT--------ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV 130 (598)
Q Consensus 61 ~~c~w~g--v~c~~~~--------~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 130 (598)
..|.|.+ |.|+... .++++|+|++ +.+.+..|..+.++++|++|++++|.+.+.-.
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~ 71 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL--------------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIR 71 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS--------------SCCCEECTTTTSSCTTCCEEECCCCSTTCEEC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC--------------CccCcCChhHhccCccccEEECcCCcccceEC
Confidence 3455544 7775422 4566677766 56666666667777777777777776654312
Q ss_pred chhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHh
Q 037325 131 PEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEV 210 (598)
Q Consensus 131 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 210 (598)
+..+.++++|++|++++|++++..|..|+++++|++|++++|.+.........+.++++|++|++++|.+.+..+ ...
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~ 149 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASF 149 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGG
T ss_pred cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc--ccc
Confidence 445666777777777777776666666777777777777766554322222335666666666666666665532 122
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCC--CCccEEEccCCCCCCCcchhh--------hcCCCCCEEEccCCcccccC
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNF--ASLQVLDLSNNDFNSTTPHWL--------FNITSLLCLDLGSNDLQGDI 280 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~l~~~~ 280 (598)
+..+++|++|++++|.+++..+ ..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred cCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 5566666666666666665544 222222 456666666666554333221 23445555566555555544
Q ss_pred CccccC---CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccc
Q 037325 281 PDGFAS---LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTG 357 (598)
Q Consensus 281 ~~~l~~---l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 357 (598)
|..+.. .++|+.|++++|........ .+.+.+.....+..+. ..+|++|++++|.+.+
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGLE----ASGVKTCDLSKSKIFA 289 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGGT----TSCCCEEECCSSCCCE
T ss_pred hhhhhccccccceeeEeeccccccccccc---------------hhhhccCccccccccc----ccCceEEEecCccccc
Confidence 443322 24555555555542111000 0011111111111110 1257777777777776
Q ss_pred cCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccch
Q 037325 358 ILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISD 437 (598)
Q Consensus 358 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (598)
..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..|.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-S---RMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-G---GGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-h---hHhcCcccCCEEECCCCcccccChh
Confidence 66666777777777777777777666666777777777777777765543 2 2355667777777777777666665
Q ss_pred HHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCC
Q 037325 438 WFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLL 484 (598)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~ 484 (598)
.+.. +++|++|++++|++++..+..+... .|+.+++++|++.+..|
T Consensus 366 ~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 366 SFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hccc-cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5554 5677777777777776555444443 67777777777776655
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.8e-37 Score=320.26 Aligned_cols=365 Identities=20% Similarity=0.178 Sum_probs=208.1
Q ss_pred cceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccC
Q 037325 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 101 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 180 (598)
..+..+..++++++|++|++++|.+++ +| .+..+++|++|++++|++++ +| ++.+++|++|++++|.+....
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--
Confidence 334445577889999999999999885 45 57889999999999999885 44 788888888888888765431
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 260 (598)
+.++++|++|++++|.+.+. + +..+++|++|++++|.+++++ +..+++|++|++++|...+.+ .+
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l----~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL----D--VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC----C--CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred ---cCCCCcCCEEECCCCcCCee----c--CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc--cc
Confidence 66777777777777777654 1 556667777777777666642 345566666666666444333 24
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCC
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 340 (598)
..+++|+.|++++|.+++ +| +..+++|+.|++++|.+ .+. .++.+++|++|++++|++++. | +..++
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~--- 233 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLT--- 233 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCT---
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCccccc-C--ccccC---
Confidence 555666666666666654 33 55555666666666652 221 244455555555555555542 2 22333
Q ss_pred CCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCC
Q 037325 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 341 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~ 420 (598)
+|++|++++|++++.. ++.+++|+.|+++.| +|+.+++++|.+.+.. | ...+++
T Consensus 234 ---~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~-~-----~~~l~~ 287 (457)
T 3bz5_A 234 ---QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF-Q-----AEGCRK 287 (457)
T ss_dssp ---TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE-E-----CTTCTT
T ss_pred ---CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc-c-----cccccc
Confidence 4555555555554421 233444444444433 2344445555444333 1 233444
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
|+.|++++|...+.+|.. .+.| +.+++++| ++|++|++++|++
T Consensus 288 L~~L~Ls~n~~l~~l~~~----~~~L-----------------------~~L~l~~~----------~~L~~L~L~~N~l 330 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQ----AAGI-----------------------TELDLSQN----------PKLVYLYLNNTEL 330 (457)
T ss_dssp CCCCCCTTCTTCCEEECT----TCCC-----------------------SCCCCTTC----------TTCCEEECTTCCC
T ss_pred CCEEECCCCcccceeccC----CCcc-----------------------eEechhhc----------ccCCEEECCCCcc
Confidence 445555544444333321 2233 33333333 3556666666666
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
++ ++ ++. +++|+.|++++|++++ ++.|+.|++++|+++|. +++..|+.+++++|
T Consensus 331 ~~-l~--l~~----------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 331 TE-LD--VSH----------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp SC-CC--CTT----------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred cc-cc--ccc----------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 54 22 333 5566666666666653 13444455666666554 23344555666666
Q ss_pred CCcccCCcCc
Q 037325 581 YLSGKLPLSL 590 (598)
Q Consensus 581 ~l~g~~P~~~ 590 (598)
+++|.||..+
T Consensus 385 ~l~g~ip~~~ 394 (457)
T 3bz5_A 385 SLTIAVSPDL 394 (457)
T ss_dssp BEEEECCTTC
T ss_pred cEEEEcChhH
Confidence 6666666544
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-37 Score=318.86 Aligned_cols=407 Identities=17% Similarity=0.130 Sum_probs=315.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
-.+++.|++++ +.+++. | .+..+++|++|++++|++++ +| ++.+++|++|++++|++++
T Consensus 41 l~~L~~L~Ls~--------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~- 99 (457)
T 3bz5_A 41 LATLTSLDCHN--------------SSITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTN- 99 (457)
T ss_dssp HTTCCEEECCS--------------SCCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSC-
T ss_pred cCCCCEEEccC--------------CCcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCce-
Confidence 35789999998 677764 4 69999999999999999996 44 7899999999999999996
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
+| ++.+++|++|++++|.+.... +..+++|++|++++|.+++. .+..+++|++|++++|...+..
T Consensus 100 ~~--~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC------CCTTCTTCCEEECTTCSCCCCC--
T ss_pred ee--cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee------ccccCCcCCEEECCCCCccccc--
Confidence 44 899999999999999876532 78999999999999999885 2678999999999999544332
Q ss_pred CCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCC
Q 037325 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC 313 (598)
Q Consensus 234 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 313 (598)
.+..+++|++|++++|++++. | +..+++|+.|++++|.+++. .+..+++|++|++++|++ .+ +| +..++
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~ 233 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID--VTPLT 233 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC--CTTCT
T ss_pred -ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC--ccccC
Confidence 356789999999999999974 4 78899999999999999864 388899999999999994 44 55 88999
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCC
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 393 (598)
+|++|++++|++++..+ ..++ +|+.|++++| +|+.|++++|.+.+.+| +..+++|
T Consensus 234 ~L~~L~l~~N~l~~~~~---~~l~------~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV---STLS------KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp TCSEEECCSSCCSCCCC---TTCT------TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred CCCEEEeeCCcCCCcCH---HHCC------CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccC
Confidence 99999999999998653 3344 7899998765 46678899999888877 5788999
Q ss_pred CEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEE
Q 037325 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKV 472 (598)
Q Consensus 394 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l 472 (598)
+.|++++|...+.+ + ...+.|+.+++++| ++|++|++++|++++. + +... .|+.+
T Consensus 289 ~~L~Ls~n~~l~~l-~------~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L 344 (457)
T 3bz5_A 289 KELDVTHNTQLYLL-D------CQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSL 344 (457)
T ss_dssp CCCCCTTCTTCCEE-E------CTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEE
T ss_pred CEEECCCCccccee-c------cCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEE
Confidence 99999999887765 3 23466777777665 5789999999999884 3 4444 88999
Q ss_pred EcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC-CCCCCEE
Q 037325 473 DLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN-ISFLYIL 551 (598)
Q Consensus 473 ~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L 551 (598)
++++|++++ ++.|+.|++++|.++|. +. +..|+.+++++|+++|.+|..+.. ..++...
T Consensus 345 ~l~~N~l~~-----l~~L~~L~l~~n~l~g~-----~~----------~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~ 404 (457)
T 3bz5_A 345 SCVNAHIQD-----FSSVGKIPALNNNFEAE-----GQ----------TITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404 (457)
T ss_dssp ECCSSCCCB-----CTTGGGSSGGGTSEEEE-----EE----------EEECCCBCCBTTBEEEECCTTCBCTTSCCCEE
T ss_pred ECCCCCCCC-----ccccccccccCCcEEec-----ce----------eeecCccccccCcEEEEcChhHhcccCceeec
Confidence 999999987 35788889999999876 12 577899999999999999986643 3445445
Q ss_pred ECCCCcCccccc--hhccCCC-----CCCEEEccCCCCcccCCcCccCcCCC
Q 037325 552 DMSNNSLSGSTP--ESIGSLR-----TVKFLVLRNNYLSGKLPLSLKNCTFQ 596 (598)
Q Consensus 552 ~ls~N~l~~~~p--~~l~~l~-----~L~~L~l~~n~l~g~~P~~~~~~~~L 596 (598)
.-..+....... -.+.+++ -+.....++|.++|.|+.-+.....+
T Consensus 405 ~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~~ 456 (457)
T 3bz5_A 405 EPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456 (457)
T ss_dssp EESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-----
T ss_pred cCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccccccC
Confidence 544433221111 1122221 22333445789999998877665543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-35 Score=309.24 Aligned_cols=345 Identities=26% Similarity=0.340 Sum_probs=233.3
Q ss_pred cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCC
Q 037325 159 GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLN 238 (598)
Q Consensus 159 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 238 (598)
..++++++|++.++.+.... .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++.++ +.+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~----~~~~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~---~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP---LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG---GTT
T ss_pred hHhccccEEecCCCCCccCc----chhhhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh---hcC
Confidence 34678899999887664332 3677888999999999888763 2 7888889999999888888764 677
Q ss_pred CCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE
Q 037325 239 FASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318 (598)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 318 (598)
+++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++.++. ... + .+..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~--~~~-~-~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQV--TDL-K-PLANLTTLERL 182 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESC--CCC-G-GGTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcc--cCc-h-hhccCCCCCEE
Confidence 8889999998888876543 7888888899888888874 33 47788888888886432 222 2 27788888888
Q ss_pred ecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeC
Q 037325 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398 (598)
Q Consensus 319 ~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 398 (598)
++++|.+.+.. .+..++ +|++|++++|.+.+..+ ++.+++|+.|++++|++.+. ..+..+++|++|++
T Consensus 183 ~l~~n~l~~~~--~l~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 183 DISSNKVSDIS--VLAKLT------NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp ECCSSCCCCCG--GGGGCT------TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ECcCCcCCCCh--hhccCC------CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 88888876542 345555 78888888888876544 56678888888888887743 34777888888888
Q ss_pred cCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccC
Q 037325 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFN 477 (598)
Q Consensus 399 ~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n 477 (598)
++|.+++.. + +..+++|+.|++++|++++..+ + ..+++|++|++++|++++..+ +... .|+.|++++|
T Consensus 251 ~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLA-P-----LSGLTKLTELKLGANQISNISP--L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCG-G-----GTTCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred CCCccccch-h-----hhcCCCCCEEECCCCccCcccc--c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence 888877653 2 6677888888888888876554 2 336778888888887775433 2222 5555555555
Q ss_pred cCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCC
Q 037325 478 NFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNN 556 (598)
Q Consensus 478 ~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 556 (598)
++.+..|. .+++|++|++++|++++. ..+.. +++|+.|++++|++++..| +.++++|+.|++++|
T Consensus 320 ~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~----------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 320 NISDISPVSSLTKLQRLFFYNNKVSDV--SSLAN----------LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTT----------CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred cCCCchhhccCccCCEeECCCCccCCc--hhhcc----------CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 55543331 234555555555555432 12222 4555555555555554444 445555555555555
Q ss_pred cCcc
Q 037325 557 SLSG 560 (598)
Q Consensus 557 ~l~~ 560 (598)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-35 Score=304.58 Aligned_cols=344 Identities=25% Similarity=0.315 Sum_probs=184.9
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
++++.|+++++.+.. +|. +..+++|++|++++|.+++. |. +..+++|++|++++|.+..... +.++++|++
T Consensus 46 ~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP----LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred ccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh----hcCCCCCCE
Confidence 344444444444442 232 34444455555554444422 22 4444444444444443322211 344444444
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
|++++|.+.+.. .+..+++|++|++++|.+.+.+ .+..+++|++|+++ |.+.+..+ +.++++|+.|+++
T Consensus 117 L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDID-----PLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECC
T ss_pred EECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-CcccCchh--hccCCCCCEEECc
Confidence 444444444331 1444444444444444444432 23444555555553 22322211 4555555555555
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|.+.+. ..+..+++|++|++++|. +.+..+ ++.+++|++|++++|.+.+. ..+..++ +|++|++++
T Consensus 186 ~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~l~~ 252 (466)
T 1o6v_A 186 SNKVSDI--SVLAKLTNLESLIATNNQ-ISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT------NLTDLDLAN 252 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCS
T ss_pred CCcCCCC--hhhccCCCCCEEEecCCc-cccccc--ccccCCCCEEECCCCCcccc--hhhhcCC------CCCEEECCC
Confidence 5555422 224555555666665555 232222 44555566666666555543 1233333 566666666
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCS
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCCcCC
Confidence 66664433 5666666666666666664333 566666777777776665533 1455666666666666666
Q ss_pred cccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhccc
Q 037325 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNL 512 (598)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 512 (598)
+..+ + ..+++|++|++++|++++. + . ...+++|+.|++++|++++..| +..
T Consensus 323 ~~~~--~-~~l~~L~~L~l~~n~l~~~-~-~--------------------l~~l~~L~~L~l~~n~l~~~~~--~~~-- 373 (466)
T 1o6v_A 323 DISP--V-SSLTKLQRLFFYNNKVSDV-S-S--------------------LANLTNINWLSAGHNQISDLTP--LAN-- 373 (466)
T ss_dssp CCGG--G-GGCTTCCEEECCSSCCCCC-G-G--------------------GTTCTTCCEEECCSSCCCBCGG--GTT--
T ss_pred Cchh--h-ccCccCCEeECCCCccCCc-h-h--------------------hccCCCCCEEeCCCCccCccch--hhc--
Confidence 6554 2 2356677777777666542 1 1 1235688999999999987766 555
Q ss_pred CCCCCccccCCCCeEeCcCCcccc
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSG 536 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (598)
+++|+.|++++|.+++
T Consensus 374 --------l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 --------LTRITQLGLNDQAWTN 389 (466)
T ss_dssp --------CTTCCEEECCCEEEEC
T ss_pred --------CCCCCEEeccCCcccC
Confidence 8999999999999996
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=300.21 Aligned_cols=303 Identities=22% Similarity=0.194 Sum_probs=146.5
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEEC
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 295 (598)
.+++|++++|.++++++ ..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 44555555555544443 33444455555555555544444444445555555555555444333333444445555555
Q ss_pred cCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEcc
Q 037325 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375 (598)
Q Consensus 296 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 375 (598)
++|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|+++
T Consensus 112 s~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCC------CCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 5544 3333344444444444444444444444444444333 44444444444444333344444444444444
Q ss_pred CCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCc
Q 037325 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 376 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
+|.+.+..+..+..+++|++|++++|...+.. +.. .....+|+.|++++|++++..+..+.. +++|++|++++|.
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTM-TPN---CLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNP 259 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEE-CTT---TTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSC
T ss_pred CCcCcEeChhhcccCcccceeeCCCCcccccc-Ccc---cccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCc
Confidence 44444443334444444444444444433333 111 111224444444444444322222221 3444444444444
Q ss_pred CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 456 ~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
+++..+..+ ..+++|+.|++++|++++..|..+.. +++|+.|+|++|.++
T Consensus 260 l~~~~~~~~--------------------~~l~~L~~L~L~~n~l~~~~~~~~~~----------l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 260 ISTIEGSML--------------------HELLRLQEIQLVGGQLAVVEPYAFRG----------LNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCEECTTSC--------------------TTCTTCCEEECCSSCCSEECTTTBTT----------CTTCCEEECCSSCCS
T ss_pred CCccChhhc--------------------cccccCCEEECCCCccceECHHHhcC----------cccCCEEECCCCcCc
Confidence 432222111 12456677777777776666655555 677777777777777
Q ss_pred cccchhccCCCCCCEEECCCCcCccc
Q 037325 536 GEIPLLFSNISFLYILDMSNNSLSGS 561 (598)
Q Consensus 536 ~~~p~~~~~l~~L~~L~ls~N~l~~~ 561 (598)
+..+..|.++++|++|++++|.+...
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred eeCHhHcCCCcccCEEEccCCCccCc
Confidence 55555667777777777777766543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=292.56 Aligned_cols=301 Identities=22% Similarity=0.233 Sum_probs=141.2
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEEC
Confidence 44555555555554444445555555555555555544444445555555555555554 23333333444555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 112 s~n~i~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 112 SENKIVILLDYMFQDLY------NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp TTSCCCEECTTTTTTCT------TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCCccccCChhHccccc------cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 55555444444444444 455555555555444444455555555555555555444444445555555555555
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+.+.. +. .+..+++|+.|++++|...+.++..... ..+|++|++++|++++..+..+.
T Consensus 186 n~i~~~~-~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~--------------- 245 (477)
T 2id5_A 186 LNINAIR-DY---SFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVR--------------- 245 (477)
T ss_dssp CCCCEEC-TT---CSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHT---------------
T ss_pred CcCcEeC-hh---hcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhc---------------
Confidence 5544432 21 2344445555555555444444433332 22455555555544421111111
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
.+++|+.|++++|++++..+..+.. +++|+.|+|++|.+++..|..|.++++|++|++++|++++
T Consensus 246 -----~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 246 -----HLVYLRFLNLSYNPISTIEGSMLHE----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp -----TCTTCCEEECCSSCCCEECTTSCTT----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred -----CccccCeeECCCCcCCccChhhccc----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 1234444444444444333333332 4455555555555554445555555555555555555554
Q ss_pred ccchhccCCCCCCEEEccCCCCc
Q 037325 561 STPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+..|..+++|++|++++|++.
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEE
T ss_pred eCHhHcCCCcccCEEEccCCCcc
Confidence 44444445555555555555543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9e-33 Score=283.01 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=201.4
Q ss_pred CCCCCCEEeCCCCCCCCCCcch-hccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPE-FIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 189 (598)
.++++++|+++++.++. +|. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+.... ...+.++++
T Consensus 43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTT
T ss_pred ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC--HHHhcCCCC
Confidence 35677777777777663 443 3566777777777777777555556777777777777776554322 234666777
Q ss_pred CcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
|++|++++|.+.... ...+..+++|++|++++|.+++.++ ..+..+++|++|++++|++++.. +..+++|+.|
T Consensus 119 L~~L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERNDLSSLP---RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEE
T ss_pred CCEEECCCCccCcCC---HHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc---ccccccccee
Confidence 777777777776553 3345677777777777777776655 45566777777777777776542 4556777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
++++|.+++ +...++|++|++++|.+ .. ++.. ..++|+.|++++|.+++. ..+..++ +|++|+
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l-~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~ 254 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSI-NV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYP------GLVEVD 254 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCC-CE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCT------TCSEEE
T ss_pred ecccccccc-----cCCCCcceEEECCCCee-ee-cccc--ccccccEEECCCCCCccc--HHHcCCC------CccEEE
Confidence 777776653 22345677777777763 22 2222 245777777777777654 3445555 677777
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|++++.+ . .+..+++|+.|++++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~--~---~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVE--R---NQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCG--G---GHHHHTTCSEEECCSS
T ss_pred CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecC--c---cccccCcCCEEECCCC
Confidence 77777776667777777777777777777763 4555566777777777777776432 1 2455667777777777
Q ss_pred cCccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 430 RISDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 430 ~l~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
++++... ..+++|++|++++|++.+
T Consensus 329 ~i~~~~~----~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 329 SIVTLKL----STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCCCCC----CTTCCCSEEECCSSCEEH
T ss_pred ccceeCc----hhhccCCEEEcCCCCccc
Confidence 7765432 225677777777777765
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-32 Score=281.24 Aligned_cols=309 Identities=22% Similarity=0.245 Sum_probs=166.6
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
+++++.++++++.++.++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCCh-hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4566666666666665554 334455666666666666665555556666666666666666665555555666666666
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 373 (598)
++++|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++. .+..+++|+.|+
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT------TCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC------CCCEEECCCCcCCcc---ccccccccceee
Confidence 666665 3332233345566666666666666555555555544 566666666665543 234455566666
Q ss_pred ccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccC
Q 037325 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~ 453 (598)
+++|.+.+ +...++|++|++++|.++... . ...++|+.|++++|++++. ..+.. +++|++|++++
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~Ls~ 257 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVVR-G------PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSY 257 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEEE-C------CCCSSCCEEECCSSCCCCC--GGGGG-CTTCSEEECCS
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeecc-c------cccccccEEECCCCCCccc--HHHcC-CCCccEEECCC
Confidence 66665542 123345666666666555432 1 1234566666666655543 22222 45556666666
Q ss_pred CcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 454 n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
|.+++..|..+.. +++|++|++++|++++ +|..+.. +++|+.|++++|+
T Consensus 258 n~l~~~~~~~~~~--------------------l~~L~~L~L~~n~l~~-~~~~~~~----------l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 258 NELEKIMYHPFVK--------------------MQRLERLYISNNRLVA-LNLYGQP----------IPTLKVLDLSHNH 306 (390)
T ss_dssp SCCCEEESGGGTT--------------------CSSCCEEECCSSCCCE-EECSSSC----------CTTCCEEECCSSC
T ss_pred CcCCCcChhHccc--------------------cccCCEEECCCCcCcc-cCcccCC----------CCCCCEEECCCCc
Confidence 5555544444433 3455555555555542 2332222 4555555555555
Q ss_pred cccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 534 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++ .+|..++.+++|++|++++|++++ +| +..+++|+.|++++|++.
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred ce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCcc
Confidence 55 444455555555555555555553 22 445555555555555554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=269.25 Aligned_cols=305 Identities=23% Similarity=0.320 Sum_probs=182.8
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.+++|++|+++++.+..++. +..+++|++|++++|++++..+ +..+++|++|++++|.+++ + +.+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchh---hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 44455555555555544432 3345555555555555554322 5555555555555555543 2 23555555555
Q ss_pred EECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEE
Q 037325 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 372 (598)
|++++|.+ .. ++. +..+++|++|++++|......+. +..++ +|++|++++|.+.+..+ +..+++|+.|
T Consensus 115 L~l~~n~i-~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~------~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 115 LYLNEDNI-SD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMT------GLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp EECTTSCC-CC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCT------TCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred EECcCCcc-cC-chh-hccCCceeEEECCCCCCcccccc-hhhCC------CCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 55555552 22 222 45555555555555543333222 33333 56666666665553322 5556666666
Q ss_pred EccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc
Q 037325 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA 452 (598)
Q Consensus 373 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls 452 (598)
++++|.+.+.. . +..+++|+.+++++|.+++.. .+..+++|++|++++|++++..+ ...+++|++|+++
T Consensus 183 ~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 183 SLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIG 251 (347)
T ss_dssp ECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred EccCCcccccc-c-ccCCCccceeecccCCCCCCc------hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECC
Confidence 66666655332 2 556666666666666655432 14555666666666666655433 2235666666666
Q ss_pred CCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCC
Q 037325 453 YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532 (598)
Q Consensus 453 ~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N 532 (598)
+|.+++. + . ...+++|++|++++|++++. | .+.. +++|+.|++++|
T Consensus 252 ~n~l~~~-~-~--------------------~~~l~~L~~L~l~~n~l~~~-~-~~~~----------l~~L~~L~L~~n 297 (347)
T 4fmz_A 252 TNQISDI-N-A--------------------VKDLTKLKMLNVGSNQISDI-S-VLNN----------LSQLNSLFLNNN 297 (347)
T ss_dssp SSCCCCC-G-G--------------------GTTCTTCCEEECCSSCCCCC-G-GGGG----------CTTCSEEECCSS
T ss_pred CCccCCC-h-h--------------------HhcCCCcCEEEccCCccCCC-h-hhcC----------CCCCCEEECcCC
Confidence 6665531 1 0 12356788888888888753 2 3444 899999999999
Q ss_pred ccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 533 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
.+++..|..++++++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9998899999999999999999999997666 888999999999999886
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-32 Score=293.01 Aligned_cols=310 Identities=20% Similarity=0.206 Sum_probs=158.6
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
+++++.+++++|.+... .+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+.... ...+.++++|+
T Consensus 50 l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC--HHHHcCCCCCC
Confidence 44555555555555532 2223445555555555555555444445555555555555555443221 22345555555
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
+|++++|.+.... +..|..+++|++|++++|.+++.++ ..+..+++|++|++++|.+++.. +..+++|+.|++
T Consensus 127 ~L~L~~n~l~~l~---~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 127 VLVLERNDLSSLP---RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp EEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred EEEeeCCCCCCCC---HHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 5555555555443 2334555555555555555555544 34455555666666655555432 334455555555
Q ss_pred cCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
++|.+++ +...++|+.|++++|.+ .. ++..+ .++|+.|++++|.+++. ..+..++ +|++|+++
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l-~~-~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~------~L~~L~Ls 262 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSI-NV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEVDLS 262 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCC-CE-EECSC--CSCCCEEECCSSCCCCC--GGGGGCT------TCSEEECC
T ss_pred ccCcccc-----ccCCchhheeeccCCcc-cc-ccccc--CCCCCEEECCCCCCCCC--hhhccCC------CCCEEECC
Confidence 5555542 22334555566665552 21 12111 24555666666555542 3334444 56666666
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccC
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARI 431 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l 431 (598)
+|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++.. |. .+..+++|+.|++++|.+
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i--~~---~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV--ER---NQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC--GG---GHHHHTTCSEEECCSSCC
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc--Cc---ccccCCCCCEEECCCCCC
Confidence 666655555555556666666666665553 344445555666666666655532 21 234455566666666665
Q ss_pred ccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 432 SDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
++.... .++.|+.|++++|.+.+
T Consensus 337 ~~~~~~----~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTLKLS----THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCCC----TTCCCSEEECCSSCEEH
T ss_pred CCcChh----hcCCCCEEEeeCCCCCC
Confidence 544211 24556666666665544
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-31 Score=265.51 Aligned_cols=306 Identities=25% Similarity=0.321 Sum_probs=165.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|+++++.+.. ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+... ..+.+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~----~~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI----SALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC----GGGTTCT
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc----hHHcCCC
Confidence 3456677777777777663 333 5667777777777777763 343 66777777777776654432 2356666
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+.. .+..+++|++|++++|....... .+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 111 ~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 111 NLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred cCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 6666666666665542 15566666666666664333322 24455666666666666554333 555666666
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEE
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL 348 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L 348 (598)
|++++|.+.+. +. +..+++|+.|++++|. +.+..+ +..+++|++|++++|.+++..+ +..++ +|++|
T Consensus 182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L 248 (347)
T 4fmz_A 182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL 248 (347)
T ss_dssp EECTTSCCCCC-GG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred EEccCCccccc-cc-ccCCCccceeecccCC-CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence 66666655532 22 4555566666666665 222222 4555555555555555554333 33333 55555
Q ss_pred EccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 349 ELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 349 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.. + ..+..+++|+.|++++
T Consensus 249 ~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~-~---~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED-M---EVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG-H---HHHHTCTTCSEEECCS
T ss_pred ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC-h---hHhhccccCCEEEccC
Confidence 5555555532 2345555555555555555532 23455555555555555554332 1 2344455555555555
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCcC
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNEL 456 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~~ 456 (598)
|++++..| + ..+++|++|++++|.+
T Consensus 321 n~l~~~~~--~-~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 321 NHITDIRP--L-ASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCCGG--G-GGCTTCSEESSSCC--
T ss_pred CccccccC--h-hhhhccceeehhhhcc
Confidence 55554444 1 1245555555555554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-32 Score=292.75 Aligned_cols=309 Identities=22% Similarity=0.239 Sum_probs=174.9
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
+++++.++++++.+..++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566777777776666655 445556667777777776666655566666677777777766666555556666667777
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 373 (598)
++++|. +....+..|+.+++|++|++++|.+.+..+..+..++ +|++|++++|.+++.. ++.+++|+.|+
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT------TCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC------cCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 776666 3433334456666666666666666666665555555 5666666666665432 34456666666
Q ss_pred ccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccC
Q 037325 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~ 453 (598)
+++|.+.+ +...++|+.|++++|.++... . ...++|+.|++++|.+++. ..+.. ++.|++|++++
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~-~------~~~~~L~~L~L~~n~l~~~--~~l~~-l~~L~~L~Ls~ 263 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVVR-G------PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSY 263 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEEE-C------SCCSCCCEEECCSSCCCCC--GGGGG-CTTCSEEECCS
T ss_pred cccCcccc-----ccCCchhheeeccCCcccccc-c------ccCCCCCEEECCCCCCCCC--hhhcc-CCCCCEEECCC
Confidence 66665553 223345666666666665443 1 1124566666666666553 22322 55666666666
Q ss_pred CcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 454 n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
|.+++..|..+... ++|+.|+|++|++++ +|..+.. +++|+.|+|++|.
T Consensus 264 N~l~~~~~~~~~~l--------------------~~L~~L~Ls~N~l~~-l~~~~~~----------l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 264 NELEKIMYHPFVKM--------------------QRLERLYISNNRLVA-LNLYGQP----------IPTLKVLDLSHNH 312 (597)
T ss_dssp SCCCEEESGGGTTC--------------------SSCCEEECTTSCCCE-EECSSSC----------CTTCCEEECCSSC
T ss_pred CccCCCCHHHhcCc--------------------cCCCEEECCCCCCCC-CCccccc----------CCCCcEEECCCCC
Confidence 66665555554433 344455555554442 2322222 4455555555555
Q ss_pred cccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 534 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++ .+|..++.+++|++|+|++|.+++. | +..+++|+.|++++|+++
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 54 4444445555555555555555432 2 344445555555555544
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.3e-34 Score=303.95 Aligned_cols=320 Identities=20% Similarity=0.167 Sum_probs=206.3
Q ss_pred CccEEEccCCCCCC----CcchhhhcCCCCCEEEccCCcccccCCccc-----cCCCCccEEECcCCCcCcc----ccch
Q 037325 241 SLQVLDLSNNDFNS----TTPHWLFNITSLLCLDLGSNDLQGDIPDGF-----ASLNSLQELDLSGNSFLGG----QLSR 307 (598)
Q Consensus 241 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~ 307 (598)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|. +.. .++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHH
Confidence 56666666666653 346666677777777777777664333322 224567777777777 333 2355
Q ss_pred hhcCCCCCCEEecccccCCcccchhhhC-----CCCCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCc
Q 037325 308 NLGKLCNLRTMILSRNNISSEVSDFLDG-----LSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNS 378 (598)
Q Consensus 308 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~ 378 (598)
.+..+++|++|++++|.+.+..+..+.. .+ +|++|++++|.+++. ++..+..+++|++|++++|+
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC------QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC------CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCC------CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 5666777888888877776654443332 22 677888888877653 35556667778888888887
Q ss_pred CCccc-----hhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhc----CCCCCEE
Q 037325 379 FLGSI-----PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL----SLTLDEL 449 (598)
Q Consensus 379 l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L 449 (598)
+.+.. +.....+++|++|++++|.+++.........+..+++|+.|++++|++++..+..+... .++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 76532 12223567788888888877654211112345567778888888887766555444432 2466777
Q ss_pred EccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCc-cccCCCCeEe
Q 037325 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL-GNLKQLITLV 528 (598)
Q Consensus 450 ~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~-~~l~~L~~L~ 528 (598)
++++|.+++.....+. .....+++|++||+++|++++..+..+... + ...++|+.|+
T Consensus 319 ~L~~n~l~~~~~~~l~----------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------l~~~~~~L~~L~ 376 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFS----------------SVLAQNRFLLELQISNNRLEDAGVRELCQG------LGQPGSVLRVLW 376 (461)
T ss_dssp ECTTSCCBGGGHHHHH----------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHH------HTSTTCCCCEEE
T ss_pred EcCCCCCchHHHHHHH----------------HHHhhCCCccEEEccCCccccccHHHHHHH------HcCCCCceEEEE
Confidence 7776666532111000 000124689999999999987766655431 1 1146899999
Q ss_pred CcCCcccc----ccchhccCCCCCCEEECCCCcCccccchhcc-----CCCCCCEEEccCCCCcccCCcC
Q 037325 529 ISNNNLSG----EIPLLFSNISFLYILDMSNNSLSGSTPESIG-----SLRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 529 Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-----~l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|.+++ .+|..+.++++|++|++++|++++.-...+. ..++|+.|++.++.+....++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 99999997 7899999999999999999999865333332 2457999999988877655443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.1e-32 Score=274.49 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=175.4
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCcccEEecC--------CCCcEEEEEcCCCCCCCCCCccc
Q 037325 30 SGCQEAERKALLQFKQSL-RDPSGQLSSWV-----GEDCCSWSGVSCNN--------RTASVIKLNLNNPFRDSFGSFED 95 (598)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~W~-----~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~ 95 (598)
..+..+|++||++||+.+ .++.++...|. ..++|.|.|+.|.. ...+|+.|+|++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----------- 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----------- 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----------
Confidence 356778999999999988 57766677882 56889999999952 346899999988
Q ss_pred CCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCC
Q 037325 96 DAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQ 175 (598)
Q Consensus 96 ~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~ 175 (598)
+++. .+|..+.++++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|...
T Consensus 91 ---n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 91 ---VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp ---SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred ---CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 6776 77888889999999999999998 48888999999999999999999 88999999999999999987653
Q ss_pred CCccC-h------hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEcc
Q 037325 176 SNQID-L------EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248 (598)
Q Consensus 176 ~~~~~-~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~ 248 (598)
..... . ..+.++++|++|++++|.++.. +..+..+++|++|++++|.+++++. .+..+++|++|+++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLR 237 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECc
Confidence 32211 1 1123355566666665555532 3345555555555555555554433 23444555555555
Q ss_pred CCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccc
Q 037325 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 249 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 322 (598)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+ ..+.+|..++.+++|+.+++..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECCG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCCH
Confidence 555554455445555555555555554444444444445555555555544 3344444455555555444443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4e-32 Score=268.83 Aligned_cols=253 Identities=26% Similarity=0.395 Sum_probs=175.4
Q ss_pred CCccEEECcCCCcCcc--ccchhhcCCCCCCEEeccc-ccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccC
Q 037325 288 NSLQELDLSGNSFLGG--QLSRNLGKLCNLRTMILSR-NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 364 (598)
.+++.|++++|. +.+ .+|..+..+++|++|++++ |.+.+..|..+..++ +|++|++++|.+++.+|..+.
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~------~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT------TCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC------CCCEEECcCCeeCCcCCHHHh
Confidence 356677777776 444 5666666677777777763 666666666666655 666666666666666666666
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCC-CCCEEEccCccCccccchHHHhcC
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQT-ELRTLVLNKARISDTISDWFWQLS 443 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~ 443 (598)
.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.. |. .+..++ .|+.|++++|++++.+|..+.. +
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~---~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l 197 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PD---SYGSFSKLFTSMTISRNRLTGKIPPTFAN-L 197 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CG---GGGCCCTTCCEEECCSSEEEEECCGGGGG-C
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CH---HHhhhhhcCcEEECcCCeeeccCChHHhC-C
Confidence 6666666666666666666666666666666666666665544 32 234444 5555555555555555554443 2
Q ss_pred CCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCC
Q 037325 444 LTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523 (598)
Q Consensus 444 ~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~ 523 (598)
+ |++|++++|.+++..|..+. .+++|+.|++++|++++.+|. +.. +++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~--------------------~l~~L~~L~L~~N~l~~~~~~-~~~----------l~~ 245 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFG--------------------SDKNTQKIHLAKNSLAFDLGK-VGL----------SKN 245 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCC--------------------TTSCCSEEECCSSEECCBGGG-CCC----------CTT
T ss_pred c-ccEEECcCCcccCcCCHHHh--------------------cCCCCCEEECCCCceeeecCc-ccc----------cCC
Confidence 2 55555555555544333222 256788899999988866654 444 789
Q ss_pred CCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCC-Cccc
Q 037325 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY-LSGK 585 (598)
Q Consensus 524 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~ 585 (598)
|++|++++|.+++.+|..+.++++|++|++++|+++|.+|.. ..+++|+.+++++|+ ++|.
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 999999999999999999999999999999999999999987 889999999999998 7763
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.7e-33 Score=292.80 Aligned_cols=374 Identities=19% Similarity=0.117 Sum_probs=198.6
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CcchhccCCCCCCEEECcCCCCCcccchhc-cCCC----CCCEEEccCCCCCCCccC
Q 037325 109 LLQLKDLEYLDLSMNNFTGF---QVPEFIGSLKELRYLNLSGSFFSGTIPQTL-GNLS----NLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~----~L~~L~L~~n~~~~~~~~ 180 (598)
+..+++|++|++++|.+++. .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-------- 95 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-------- 95 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS--------
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC--------
Confidence 45556666666666655432 134445555666666666665553333222 2233 4555555554
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCc-ccchHhhhcCCCCCEEEcCCCCCCCCCCC----CCcCCCCCccEEEccCCCCCCC
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAG-AYWLEVFNKLHSFVELHLPNCNLPSLPLS----FPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
.+++.. ..++..+..+++|++|++++|.+++.... ......++|++|++++|++++.
T Consensus 96 ------------------~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 96 ------------------CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp ------------------CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred ------------------CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 443221 11133344444444444444444321110 0011234677777777766653
Q ss_pred c----chhhhcCCCCCEEEccCCcccccCCcccc-----CCCCccEEECcCCCcCccc----cchhhcCCCCCCEEeccc
Q 037325 256 T----PHWLFNITSLLCLDLGSNDLQGDIPDGFA-----SLNSLQELDLSGNSFLGGQ----LSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 256 ~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~ 322 (598)
. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+ ... ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-BTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC-cHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 44556667777777777776644333332 245777777777773 332 455666777777777777
Q ss_pred ccCCcccchhhh-----CCCCCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCccchhhcc-----
Q 037325 323 NNISSEVSDFLD-----GLSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGSIPPSIG----- 388 (598)
Q Consensus 323 n~l~~~~~~~~~-----~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~----- 388 (598)
|.+.+.....+. ..+ +|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 237 n~l~~~~~~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred CcCChHHHHHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 776654322221 233 677777777777643 455555667777777777776654333332
Q ss_pred CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhc----CCCCCEEEccCCcCcc----cC
Q 037325 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL----SLTLDELDVAYNELRG----RV 460 (598)
Q Consensus 389 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~ls~n~~~~----~~ 460 (598)
..++|++|++++|.+++.........+..+++|+.|++++|++++..+..+... .++|++|++++|++++ .+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 225777777777776654311122345566777777777777766555444432 3456666666666553 22
Q ss_pred CCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccch
Q 037325 461 PNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540 (598)
Q Consensus 461 p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 540 (598)
|..+.. +++|++|++++|++++.....+... ++ .....|+.|++.++.+....++
T Consensus 391 ~~~l~~--------------------~~~L~~L~l~~N~i~~~~~~~l~~~---l~--~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 391 AATLLA--------------------NHSLRELDLSNNCLGDAGILQLVES---VR--QPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHHHH--------------------CCCCCEEECCSSSCCHHHHHHHHHH---HT--STTCCCCEEECTTCCCCHHHHH
T ss_pred HHHHHh--------------------CCCccEEECCCCCCCHHHHHHHHHH---hc--cCCcchhheeecccccCHHHHH
Confidence 322221 3466666666666654432222210 00 1123566777766666544443
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.1e-32 Score=298.68 Aligned_cols=414 Identities=14% Similarity=0.064 Sum_probs=239.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCC---CCCcc------------hhccCCCCCCEEECcCCCCCcccchhccC-CC-CCCE
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFT---GFQVP------------EFIGSLKELRYLNLSGSFFSGTIPQTLGN-LS-NLLY 166 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~ 166 (598)
.++..+.++++|++|+++++... +. +| .....+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 34456678999999999875321 11 22 12236889999999999888776766665 34 4999
Q ss_pred EEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCccc-chHhhhcCCCCCEEEcCCCCCCCCCC---CCCcCCCCCc
Q 037325 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAY-WLEVFNKLHSFVELHLPNCNLPSLPL---SFPSLNFASL 242 (598)
Q Consensus 167 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~l~~L 242 (598)
|++++|.............++++|++|++++|.+.+.... +......+++|++|++++|.+++... ...+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 9998875211112223345788888888888887665432 23455677888888888887764321 0123356777
Q ss_pred cEEEccCCCCCCCcchhhhcCCCCCEEEccCCccc---ccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ---GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 243 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
++|++++|.+.+ ++..+.++++|+.|+++.+... +..+..+..+++|+.|++.++. ...+|..+..+++|++|+
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEe
Confidence 788887777664 5566777777777777653222 2233445666777777777643 355666666677777777
Q ss_pred cccccCCcccc-hhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccC-----------CcCCccc-hhh
Q 037325 320 LSRNNISSEVS-DFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQ-----------NSFLGSI-PPS 386 (598)
Q Consensus 320 l~~n~l~~~~~-~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~-----------n~l~~~~-~~~ 386 (598)
+++|.+++... ..+..++ +|++|+++++-..+.++.....+++|++|++++ +.+++.. +..
T Consensus 300 Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 77776554433 2234444 677777763322222333334566677777773 3444332 222
Q ss_pred ccCCCCCCEEeCcCCcCCcccCCCchhhhcC-CCCCCEEEcc----CccCccc-----cchHHHhcCCCCCEEEccCCc-
Q 037325 387 IGNLTLLKELYLASNQMNGQKISDSYQHLKN-QTELRTLVLN----KARISDT-----ISDWFWQLSLTLDELDVAYNE- 455 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~~L~~L~ls~n~- 455 (598)
...+++|++|+++.|.+++.. +..+.. +++|+.|+++ .|.+++. ++..+ ..+++|++|++++|.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~-~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNES----LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL-IGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHH----HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH-HHCTTCCEEEEECCGG
T ss_pred HhhCccCeEEEeecCCccHHH----HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH-HhCCCCCEEEEecCCC
Confidence 344666777777666665433 222332 6666666664 4455543 22222 235666666665432
Q ss_pred -CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccC-CchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 456 -LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI-PNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 456 -~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
+++..+..+. ..+++|++|++++|++++.. +..+.. +++|++|++++|.
T Consensus 449 ~l~~~~~~~~~-------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~----------~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 449 GLTDLGLSYIG-------------------QYSPNVRWMLLGYVGESDEGLMEFSRG----------CPNLQKLEMRGCC 499 (592)
T ss_dssp GCCHHHHHHHH-------------------HSCTTCCEEEECSCCSSHHHHHHHHTC----------CTTCCEEEEESCC
T ss_pred CccHHHHHHHH-------------------HhCccceEeeccCCCCCHHHHHHHHhc----------CcccCeeeccCCC
Confidence 3322222111 12445666666666665422 222222 5666666666666
Q ss_pred cccc-cchhccCCCCCCEEECCCCcCccc
Q 037325 534 LSGE-IPLLFSNISFLYILDMSNNSLSGS 561 (598)
Q Consensus 534 l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 561 (598)
+++. ++..+..+++|++|++++|++++.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6544 333344566666666666666554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.5e-29 Score=248.78 Aligned_cols=268 Identities=18% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 265 SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+++.|++++|.+++..+..+..+++|++|++++|. +.+..|..+..+++|++|++++|.++......+ + +
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~------~ 122 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---K------T 122 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---T------T
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---c------c
Confidence 34444444444443333334444444444444444 333334444444444444444444442211111 1 4
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCC
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~ 422 (598)
|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++... .. ..++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~-----~~~~L~ 195 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QG-----LPPSLT 195 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SS-----CCTTCS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--cc-----ccccCC
Confidence 6666666666655555555666666666666666542 44455666666666666666665432 11 114566
Q ss_pred EEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc
Q 037325 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG 502 (598)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~ 502 (598)
+|++++|++++..+..+.. +++|++|++++|.+++..+..+. .+++|++|++++|+++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~--------------------~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLA--------------------NTPHLRELHLNNNKLV- 253 (330)
T ss_dssp EEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGG--------------------GSTTCCEEECCSSCCS-
T ss_pred EEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhcc--------------------CCCCCCEEECCCCcCc-
Confidence 6666666665554444443 45566666666655544333222 1345666666667666
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC------CCCCCEEECCCCcCcc--ccchhccCCCCCCE
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN------ISFLYILDMSNNSLSG--STPESIGSLRTVKF 574 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ls~N~l~~--~~p~~l~~l~~L~~ 574 (598)
.+|..+.. +++|+.|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+.+++.
T Consensus 254 ~lp~~l~~----------l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 254 KVPGGLAD----------HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SCCTTTTT----------CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred cCChhhcc----------CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 56665555 677777777777777555554432 3667777787777653 45667777777888
Q ss_pred EEccCCC
Q 037325 575 LVLRNNY 581 (598)
Q Consensus 575 L~l~~n~ 581 (598)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 8887774
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.1e-29 Score=250.70 Aligned_cols=288 Identities=20% Similarity=0.249 Sum_probs=162.0
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|. +.+..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEEC
Confidence 4555555555544 233222 2355555555555554444455555555555555555 34444555555555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYL 398 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l 398 (598)
++|.+....+..+ + +|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|++|++
T Consensus 110 ~~n~l~~l~~~~~---~------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---S------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CSSCCCSCCSSCC---T------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCCcCCccCcccc---c------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 5555543222111 1 56666666666665544456666666666666666642 444455555 6666666
Q ss_pred cCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCc
Q 037325 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNN 478 (598)
Q Consensus 399 ~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~ 478 (598)
++|.+++. |.. -.++|+.|++++|++++..+..+.. +++|++|++++|++++..+..+.
T Consensus 180 ~~n~l~~l--~~~-----~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~------------- 238 (332)
T 2ft3_A 180 SEAKLTGI--PKD-----LPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLS------------- 238 (332)
T ss_dssp CSSBCSSC--CSS-----SCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGG-------------
T ss_pred cCCCCCcc--Ccc-----ccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhh-------------
Confidence 66666553 211 1145555555555555444443333 44555555555555543332222
Q ss_pred CcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC------CCCCCEEE
Q 037325 479 FEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN------ISFLYILD 552 (598)
Q Consensus 479 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ 552 (598)
.+++|++|++++|+++ .+|..+.. +++|+.|++++|.+++..+..|.. .++|+.|+
T Consensus 239 -------~l~~L~~L~L~~N~l~-~lp~~l~~----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 239 -------FLPTLRELHLDNNKLS-RVPAGLPD----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp -------GCTTCCEEECCSSCCC-BCCTTGGG----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred -------CCCCCCEEECCCCcCe-ecChhhhc----------CccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 2456777777777776 66666665 777888888888887655555544 35677888
Q ss_pred CCCCcCc--cccchhccCCCCCCEEEccCCC
Q 037325 553 MSNNSLS--GSTPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 553 ls~N~l~--~~~p~~l~~l~~L~~L~l~~n~ 581 (598)
+++|.+. +..|..+..+++|+.+++++|+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eecCcccccccCcccccccchhhhhhccccc
Confidence 8888776 5667777888888888888774
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-28 Score=244.84 Aligned_cols=269 Identities=21% Similarity=0.205 Sum_probs=185.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+...+.. -.++|++
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCE
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-----hcccccE
Confidence 5677777777777754 444677777778888877777766677777777778887777765432221 1267777
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCC--CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS--LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
|++++|.+.... +..+..+++|++|++++|.++. ..+ ..+..+++|++|++++|.++. +|..+. ++|++|+
T Consensus 126 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 126 LRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp EECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred EECCCCcccccC---HhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 888777777665 5567777788888888777754 222 455667778888888777764 333332 6778888
Q ss_pred ccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEc
Q 037325 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350 (598)
Q Consensus 271 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 350 (598)
+++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+. ..|..+..++ +|++|++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~------~L~~L~l 270 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK------YIQVVYL 270 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS------SCCEEEC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC------CcCEEEC
Confidence 88887776667777777888888888887 55555566777778888888888777 4444555555 7888888
Q ss_pred cCccccccCccccCC------CCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCc
Q 037325 351 RFNQFTGILPISLGS------LKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 351 s~n~l~~~~~~~l~~------l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 402 (598)
++|++++..+..+.. .+.++.+++++|.+.. ..|..+..+..++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888877655555432 3677888888887753 455677888888888888874
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.3e-29 Score=248.49 Aligned_cols=291 Identities=22% Similarity=0.286 Sum_probs=187.1
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEE
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 193 (598)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------ 91 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence 6888999988887 4676553 68889999988888666667777777777777776443
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccC
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 273 (598)
... +..+..+++|++|++++|.++.++.... ++|++|++++|++++..+..+.++++|+.|++++
T Consensus 92 --------~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 92 --------KIH---EKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp --------EEC---GGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred --------ccC---HhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 221 3445555556666666665555443211 5777777777777766666677777777777777
Q ss_pred Ccccc--cCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 274 NDLQG--DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 274 n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
|.++. ..+..+..+ +|++|++++|.+ .. +|..+. ++|++|++++|.+.+..+..+..++ +|++|+++
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~------~L~~L~L~ 225 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKL-TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS------KLYRLGLG 225 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT------TCSCCBCC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCC-Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCC------CCCEEECC
Confidence 77752 445556555 777777777773 22 444332 5677777777777766666666665 67777777
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhh---cCCCCCCEEEccC
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL---KNQTELRTLVLNK 428 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~~~~L~~L~l~~ 428 (598)
+|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.. +..+... ...+.|+.+++++
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG-VNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC-TTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC-hhHccccccccccccccceEeec
Confidence 77777666666777777777777777777 66666777777777777777777654 3322111 1135566677777
Q ss_pred ccCc--cccchHHHhcCCCCCEEEccCCc
Q 037325 429 ARIS--DTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 429 n~l~--~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|.+. +..+..+. .++.|+.+++++|+
T Consensus 304 N~~~~~~~~~~~~~-~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFR-CVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGT-TBCCSTTEEC----
T ss_pred CcccccccCccccc-ccchhhhhhccccc
Confidence 6655 33333333 25666666666653
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-30 Score=283.00 Aligned_cols=418 Identities=15% Similarity=0.107 Sum_probs=262.3
Q ss_pred cchhccCCCCCCEEECcCCCCC---cccchhc------------cCCCCCCEEEccCCCCCCCccChhhhcC-CC-CCcE
Q 037325 130 VPEFIGSLKELRYLNLSGSFFS---GTIPQTL------------GNLSNLLYLDLNNFLDQSNQIDLEWLSG-LS-SLVY 192 (598)
Q Consensus 130 ~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l------------~~l~~L~~L~L~~n~~~~~~~~~~~~~~-l~-~L~~ 192 (598)
.+..+..+++|++|+++++... +.+|..+ ..+++|++|++++|.+. ......+.. ++ +|++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcE
Confidence 4556678899999999886421 2333222 26788888888887432 222233333 33 4888
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC---CCcCCCCCccEEEccCCCCCC----CcchhhhcCCC
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS---FPSLNFASLQVLDLSNNDFNS----TTPHWLFNITS 265 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~ 265 (598)
|++++|..... ..+......+++|++|++++|.+++.... .....+++|++|++++|.+++ .++..+.++++
T Consensus 143 L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 143 LKLDKCSGFTT-DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEESCEEEEH-HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EECcCCCCcCH-HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 88888762111 11233445778888888888876654321 123456778888888887762 33444567778
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcC--ccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL--GGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
|+.|++++|.+.+ ++..+..+++|++|+++..... ....+..+..+++|+.|+++++. ....+..+..++
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~------ 293 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA------ 293 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG------
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC------
Confidence 8888888877764 5566777778888887753311 12334455666777777776642 333444444444
Q ss_pred CccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC-----------CcCCcccCCCc
Q 037325 344 LLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS-----------NQMNGQKISDS 411 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~ 411 (598)
+|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++....
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-- 371 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-- 371 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--
Confidence 67777777777654332 2356677777777773322222333345667777777772 344432211
Q ss_pred hhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc----CCcCcccCCCCcccCCCCEEEcccCcCcccCCCCC
Q 037325 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA----YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWS 487 (598)
Q Consensus 412 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls----~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~ 487 (598)
.....+++|+.|+++.|.+++..+..+...+++|++|+++ .|.+++...+. .+ ..+...+
T Consensus 372 -~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------~~-~~~~~~~ 435 (592)
T 3ogk_B 372 -ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--------------GV-RSLLIGC 435 (592)
T ss_dssp -HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------HH-HHHHHHC
T ss_pred -HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--------------HH-HHHHHhC
Confidence 1134467777777777777766666665556677777775 33343211000 00 0011225
Q ss_pred cCCcEEEccCCc--ccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc-ccchhccCCCCCCEEECCCCcCccc-cc
Q 037325 488 FNVTKLYLRDNS--FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG-EIPLLFSNISFLYILDMSNNSLSGS-TP 563 (598)
Q Consensus 488 ~~L~~L~ls~n~--l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p 563 (598)
++|++|++++|. +++..+..+.. .+++|+.|++++|.+++ .++..+.++++|++|++++|.+++. ++
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQ---------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHH---------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred CCCCEEEEecCCCCccHHHHHHHHH---------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 789999998654 67666655543 37899999999999987 4566778999999999999998765 45
Q ss_pred hhccCCCCCCEEEccCCCCccc
Q 037325 564 ESIGSLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 564 ~~l~~l~~L~~L~l~~n~l~g~ 585 (598)
..+..+++|++|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 5557899999999999999865
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1e-30 Score=283.36 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred ccccCCCCCCEEeCCCCCCCC-CC-c------------chhccCCCCCCEEECcCCCCCcccchhcc-CCCCCCEEEccC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTG-FQ-V------------PEFIGSLKELRYLNLSGSFFSGTIPQTLG-NLSNLLYLDLNN 171 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~-~~-~------------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 171 (598)
..+.++++|++|+++++.... .. . +.....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 356778999999999875221 00 1 12234578888888888888776666665 678888888887
Q ss_pred CCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchH-hhhcCCCCCEEEcCCCCCCCCCC---CCCcCCCCCccEEEc
Q 037325 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLE-VFNKLHSFVELHLPNCNLPSLPL---SFPSLNFASLQVLDL 247 (598)
Q Consensus 172 n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~l~~L~~L~L 247 (598)
|.............++++|++|++++|.+++....+.. ....+++|++|++++|. ..+.. ......+++|++|++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEec
Confidence 63211111222334667777777777766554422111 12244556666655554 11110 001122355555555
Q ss_pred cCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 248 SNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 248 ~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
++|...+.++..+.++++|+.|++.
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCCCcHHHHHHHHhcCCcceEcccc
Confidence 5552211244444455555555533
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.5e-27 Score=236.52 Aligned_cols=285 Identities=18% Similarity=0.145 Sum_probs=175.6
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.|+.....+++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. .....+.++++|
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L 102 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSL 102 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTC
T ss_pred CCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc--cCHhhcCCCCCC
Confidence 4555556777777777 4666543 477888888887775444467777777777777765432 222346677777
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCC-CCCCCcchhhhcCCCCCEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 269 (598)
++|++++|.++... ...+..+++|++|++++|.++.++....+..+++|++|++++| .+....+..+.++++|++|
T Consensus 103 ~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 103 EHLDLSYNYLSNLS---SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CEEECCSSCCSSCC---HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CEEECCCCcCCcCC---HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 77777777777654 4557778888888888888877665345667778888888877 4555555667777777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
++++|.+++..|..+..+++|++|++++|. +.......+..+++|++|++++|.+++..+..+...
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------- 245 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------- 245 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccc-------------
Confidence 777777776667777777777777777776 332222333446666666666666655433222211
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCc----cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLG----SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
.....++.++++++.+.+ .+|..+..+++|++|++++|+++.. +.. .+..+++|++|+
T Consensus 246 --------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i--~~~--~~~~l~~L~~L~ 307 (353)
T 2z80_A 246 --------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV--PDG--IFDRLTSLQKIW 307 (353)
T ss_dssp ---------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--CTT--TTTTCTTCCEEE
T ss_pred --------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--CHH--HHhcCCCCCEEE
Confidence 122334444555544443 2444555566666666666665532 211 134556666666
Q ss_pred ccCccCccccc
Q 037325 426 LNKARISDTIS 436 (598)
Q Consensus 426 l~~n~l~~~~~ 436 (598)
+++|++.+..+
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 66666655443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-27 Score=235.41 Aligned_cols=282 Identities=23% Similarity=0.248 Sum_probs=149.0
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
|+.....+.+++.++.+|... .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 333444455555555544311 1345555555555554433344555555555555555544434444444445555
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCc-cccCCCCCCCEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHL 372 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 372 (598)
++++|. +++..+..+..++ +|++|++++|.+++..+ ..+..+++|++|
T Consensus 106 ~Ls~n~-------------------------l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 106 DLSYNY-------------------------LSNLSSSWFKPLS------SLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp ECCSSC-------------------------CSSCCHHHHTTCT------TCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred ECCCCc-------------------------CCcCCHhHhCCCc------cCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 555444 4443333344444 45555555555543222 244555556666
Q ss_pred EccCC-cCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEc
Q 037325 373 VLWQN-SFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDV 451 (598)
Q Consensus 373 ~ls~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 451 (598)
++++| .+.+..+..+..+++|++|++++|.+++.. +. .+..+++|++|++++|++.. ++..+...+++|++|++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PK---SLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TT---TTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HH---HHhccccCCeecCCCCcccc-chhhhhhhcccccEEEC
Confidence 66555 244333445555666666666666655543 22 24555666666666666643 33334434677777777
Q ss_pred cCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc----cCCchhhcccCCCCCccccCCCCeE
Q 037325 452 AYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG----LIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 452 s~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~----~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
++|.+++..+..+... ...+.++.++++++.+++ .+|..+.. +++|+.|
T Consensus 230 ~~n~l~~~~~~~l~~~-----------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~----------l~~L~~L 282 (353)
T 2z80_A 230 RDTDLDTFHFSELSTG-----------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQ----------ISGLLEL 282 (353)
T ss_dssp ESCBCTTCCCC-----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT----------CTTCCEE
T ss_pred CCCccccccccccccc-----------------cccchhhccccccccccCcchhhhHHHHhc----------ccCCCEE
Confidence 7777775443322210 012345555555555554 34555554 6777777
Q ss_pred eCcCCccccccchh-ccCCCCCCEEECCCCcCccccc
Q 037325 528 VISNNNLSGEIPLL-FSNISFLYILDMSNNSLSGSTP 563 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p 563 (598)
++++|+++ .+|.. |+++++|++|++++|.+++..|
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 77777777 55555 4777777777777777776554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-27 Score=232.39 Aligned_cols=230 Identities=25% Similarity=0.243 Sum_probs=121.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
++|++|++++|+++.. .+..+.++++|++|++++|.++. ..|..+..+++|++|++++|
T Consensus 28 ~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n------------------ 88 (306)
T 2z66_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN------------------ 88 (306)
T ss_dssp TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC------------------
T ss_pred CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC------------------
Confidence 4666666666666632 22335666666666666666652 22444445555555555554
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
.+... +..+..+++|++|++++|.+++.+....+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 89 --------~i~~l----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 89 --------GVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp --------SEEEE----EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred --------ccccC----hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 33322 223444555555555555555544323445556666666666666555555555666666666
Q ss_pred ccCCcccc-cCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSNDLQG-DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|.+.+ ..|..+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~ 229 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------SLQVLD 229 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT------TCCEEE
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc------cCCEeE
Confidence 66666554 345555555566666666655 3444444555555555555555555544443343333 455555
Q ss_pred ccCccccccCccccCCCC-CCCEEEccCCcCC
Q 037325 350 LRFNQFTGILPISLGSLK-NLRHLVLWQNSFL 380 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~ 380 (598)
+++|.+++..+..+..++ +|++|++++|++.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 555555444444444442 4444444444443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.9e-26 Score=244.22 Aligned_cols=267 Identities=22% Similarity=0.260 Sum_probs=175.6
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.+ . .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCC-S-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcC-C-cCCC---CCCCCCEEEC
Confidence 5788888888887 4555443 67888888888877 4554 467788888888874 3 3444 5677888888
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+++... .+. +|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++
T Consensus 109 s~N~l~~l~~----~l~------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 109 FSNPLTHLPA----LPS------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CSCCCCCCCC----CCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred cCCcCCCCCC----CCC------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 8887776433 222 67888888887774 4432 4778888888887774 333 346777888888
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+++. + ..+++|+.|++++|++++... ..++|+.|++++|.++. +|..+ ..|+.|++++|+++
T Consensus 171 N~l~~l--~------~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~-l~~~~--~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 171 NQLTSL--P------MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-LPALP--SGLKELIVSGNRLT 234 (622)
T ss_dssp SCCSCC--C------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS
T ss_pred CCCCCC--c------ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccc-cCCCC--CCCCEEEccCCccC
Confidence 877653 2 235677777777777765322 14567777777777763 33321 35667777777666
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
+ +|..+++|+.|++++|+++ .+|. . +++|+.|+|++|.++ .+|..+.++++|+.|+|++|.+++
T Consensus 235 ~-lp~~l~~L~~L~Ls~N~L~-~lp~---~----------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 235 S-LPVLPSELKELMVSGNRLT-SLPM---L----------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp C-CCCCCTTCCEEECCSSCCS-CCCC---C----------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred c-CCCCCCcCcEEECCCCCCC-cCCc---c----------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 5 4455566777777777666 4444 1 456667777777766 666666667777777777777766
Q ss_pred ccchhccCC
Q 037325 561 STPESIGSL 569 (598)
Q Consensus 561 ~~p~~l~~l 569 (598)
.+|..+..+
T Consensus 299 ~~~~~l~~L 307 (622)
T 3g06_A 299 RTLQALREI 307 (622)
T ss_dssp HHHHHHHHH
T ss_pred cCHHHHHhc
Confidence 666655543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.8e-27 Score=232.81 Aligned_cols=244 Identities=23% Similarity=0.259 Sum_probs=149.2
Q ss_pred CCcccEEecCC---------CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCC-Ccch
Q 037325 63 CSWSGVSCNNR---------TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGF-QVPE 132 (598)
Q Consensus 63 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~p~ 132 (598)
|.|.+|.|++. ...++.|++++ +.+....+..+.++++|++|++++|.++.. ..+.
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 78999999752 24688899988 677755555689999999999999998732 1256
Q ss_pred hccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh
Q 037325 133 FIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212 (598)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 212 (598)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+..... ...+..+++|++|++++|.+.... +..+.
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 147 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAF---NGIFN 147 (306)
T ss_dssp HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECS---TTTTT
T ss_pred ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccc---hhhcc
Confidence 7778999999999999998 678888899999999999876533221 123566666777777666665543 34445
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.+++|++|++++|.+++......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 55555555555555543111123344455555555555554444444444555555555555544433334444444444
Q ss_pred EECcCCCcCccccchhhcCCC-CCCEEecccccCC
Q 037325 293 LDLSGNSFLGGQLSRNLGKLC-NLRTMILSRNNIS 326 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~ 326 (598)
|++++|. +.+..+..+..++ +|++|++++|.+.
T Consensus 228 L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 228 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred eECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 5554444 3333344444442 4444444444443
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=230.31 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=120.2
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchh------hhcC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQ------HLKN 417 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------~l~~ 417 (598)
+|++|++++|.++ .+|..++.+++|++|++++|++. .+|..+..+++|++|++++|++.+.. |..+. .+..
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL-PEPLASTDASGEHQG 181 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEE
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhcc
Confidence 3444444444444 33444444444444444444444 33444444444444444444443333 22111 1334
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccC
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~ 497 (598)
+++|++|++++|+++ .+|..+.. +++|++|++++|++++ +|..+. .+++|++|++++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~--------------------~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIH--------------------HLPKLEELDLRG 238 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGG--------------------GCTTCCEEECTT
T ss_pred CCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-Cchhhc--------------------cCCCCCEEECcC
Confidence 555666666665555 34444333 4556666666665553 222221 145677777777
Q ss_pred CcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEc
Q 037325 498 NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVL 577 (598)
Q Consensus 498 n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l 577 (598)
|++.+.+|..++. +++|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|+.+++
T Consensus 239 n~~~~~~p~~~~~----------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 239 CTALRNYPPIFGG----------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CTTCCBCCCCTTC----------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CcchhhhHHHhcC----------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 7777777776665 778888888888888788888888888888888888888888888888888888888
Q ss_pred cCCCCc
Q 037325 578 RNNYLS 583 (598)
Q Consensus 578 ~~n~l~ 583 (598)
..+.+.
T Consensus 309 ~~~~~~ 314 (328)
T 4fcg_A 309 PPHLQA 314 (328)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 776654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-27 Score=237.50 Aligned_cols=268 Identities=20% Similarity=0.180 Sum_probs=186.4
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
++..+++.+.+.......+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..+ +..++ +|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~------~L 82 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS------TL 82 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT------TC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC------CC
Confidence 3444555555554333444556677888888877 555566677777777888877777766544 55555 67
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++.. +. .+..+++|+.|+
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~-~~---~~~~l~~L~~L~ 150 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-DL---DEGCRSRVQYLD 150 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG-GB---CTGGGSSEEEEE
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc-ch---hhhccCCCCEEE
Confidence 77777777776432 236777777777777654433 3566777777777776554 22 245566777777
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+++|++++..+..+...+++|++|++++|.+++. +.. ..+++|++|++++|++++ +|
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---------------------VVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---------------------CCCTTCCEEECCSSCCCE-EC
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc---------------------cccccCCEEECCCCcCCc-ch
Confidence 7777777666655544456677777777766533 110 125688999999999984 55
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc-cccchhccCCCCCCEEEccCC-CCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS-GSTPESIGSLRTVKFLVLRNN-YLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~l~~l~~L~~L~l~~n-~l~ 583 (598)
..+.. +++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.+++++| .+.
T Consensus 208 ~~~~~----------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 208 PEFQS----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGG----------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhcc----------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 55666 899999999999998 68888999999999999999998 778888999999999999844 466
Q ss_pred ccCCc
Q 037325 584 GKLPL 588 (598)
Q Consensus 584 g~~P~ 588 (598)
|..|.
T Consensus 277 ~~~~~ 281 (317)
T 3o53_A 277 GQNEE 281 (317)
T ss_dssp SSSSC
T ss_pred CCchh
Confidence 65554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.9e-26 Score=235.87 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=134.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|+|++|++++. .|..+.++++|++|+|++|++++..|..|.++++|++|++++|.+... ....+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccCCCCE
Confidence 4556666666666543 445556666666666666666555555566666666666666554322 1233555666666
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
|++++|.+.... ...+..+++|++|++++| .+..++. ..+..+++|++|++++|++++. | .+..+++|+.|++
T Consensus 152 L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIP---SYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEEC---TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEEC
T ss_pred EECCCCCcceeC---HhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccc-c-cccccccccEEEC
Confidence 666666665443 345556666666666663 3333332 4455666666666666666543 2 2556666666666
Q ss_pred cCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
++|.+++..|..|..+++|+.|++++|. +....+..+..+++|+.|++++|++++..+..+..++ +|++|+++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~ 298 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR------YLVELHLH 298 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT------TCCEEECC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc------CCCEEEcc
Confidence 6666666556666666666666666666 4555556666666666666666666665555555555 66677776
Q ss_pred Ccccc
Q 037325 352 FNQFT 356 (598)
Q Consensus 352 ~n~l~ 356 (598)
+|.+.
T Consensus 299 ~Np~~ 303 (452)
T 3zyi_A 299 HNPWN 303 (452)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 66554
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.4e-25 Score=236.95 Aligned_cols=269 Identities=23% Similarity=0.267 Sum_probs=200.5
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEE
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 294 (598)
.+++.|++++|.++.++.... ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 358888888888887765222 788888998888874 444 5688888899888887 4554 668888888
Q ss_pred CcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEc
Q 037325 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 374 (598)
+++|.+ .+ +|. .+++|+.|++++|+++.... . ++ +|++|++++|.+++ +|. .+++|+.|++
T Consensus 108 Ls~N~l-~~-l~~---~l~~L~~L~L~~N~l~~lp~-~---l~------~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 108 IFSNPL-TH-LPA---LPSGLCKLWIFGNQLTSLPV-L---PP------GLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp ECSCCC-CC-CCC---CCTTCCEEECCSSCCSCCCC-C---CT------TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CcCCcC-CC-CCC---CCCCcCEEECCCCCCCcCCC-C---CC------CCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 888884 33 343 56788888888888776432 1 23 78888998888875 343 3467888888
Q ss_pred cCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCC
Q 037325 375 WQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454 (598)
Q Consensus 375 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 454 (598)
++|.+++ +| ..+++|+.|++++|.+++.. . ..++|+.|++++|.++.... .+++|++|++++|
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~--~------~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N 231 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLASLP--T------LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGN 231 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSCCC--C------CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSS
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC--C------ccchhhEEECcCCcccccCC-----CCCCCCEEEccCC
Confidence 8888884 55 45678888899888887642 2 23678888888888875432 2467888899888
Q ss_pred cCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 455 ~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
++++ +|.. ...|+.|++++|+++ .+|..+++|+.|++++|+++ .+|..+.. +++|+.|+|++|.+
T Consensus 232 ~L~~-lp~~--l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~----------l~~L~~L~L~~N~l 296 (622)
T 3g06_A 232 RLTS-LPVL--PSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIH----------LSSETTVNLEGNPL 296 (622)
T ss_dssp CCSC-CCCC--CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-SCCGGGGG----------SCTTCEEECCSCCC
T ss_pred ccCc-CCCC--CCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-cCCHHHhh----------ccccCEEEecCCCC
Confidence 8875 4421 237888889888887 45667788888999998888 77877776 88888999999988
Q ss_pred ccccchhccCCC
Q 037325 535 SGEIPLLFSNIS 546 (598)
Q Consensus 535 ~~~~p~~~~~l~ 546 (598)
++.+|..+.+++
T Consensus 297 ~~~~~~~l~~L~ 308 (622)
T 3g06_A 297 SERTLQALREIT 308 (622)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHhcc
Confidence 888888776554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=231.52 Aligned_cols=229 Identities=22% Similarity=0.250 Sum_probs=125.8
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|+|++|+++.. .+..+.++++|++|+|++|.+++..+..|.++++|++|++++|.+.... ...+.++++|++
T Consensus 64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCce
Confidence 6778888888888764 5567778888888888888887666667777777777777776543221 123445555555
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
|++++|.+.... ...+..+++|++|++++|. .+....+..+.++++|++|+++
T Consensus 141 L~L~~N~i~~~~---~~~~~~l~~L~~L~l~~~~------------------------~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 141 LWLRNNPIESIP---SYAFNRIPSLRRLDLGELK------------------------RLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp EECCSCCCCEEC---TTTTTTCTTCCEEECCCCT------------------------TCCEECTTTTTTCSSCCEEECT
T ss_pred eeCCCCcccccC---HHHhhhCcccCEeCCCCCC------------------------CcceeCcchhhcccccCeecCC
Confidence 555555554433 2234444444444444422 2221222234444445555555
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|.++ .+| .+..+++|++|++++|. +.+..+..+..+++|++|++++|++.+..+..+..++ +|++|++++
T Consensus 194 ~n~l~-~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~ 264 (440)
T 3zyj_A 194 MCNLR-EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ------SLVEINLAH 264 (440)
T ss_dssp TSCCS-SCC-CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT------TCCEEECTT
T ss_pred CCcCc-ccc-ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC------CCCEEECCC
Confidence 44444 222 24445555555555555 3444445555555555555555555555554444444 555555555
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCC
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFL 380 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 380 (598)
|++++..+..+..+++|+.|++++|.+.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555444445555555666666655543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.1e-27 Score=235.04 Aligned_cols=207 Identities=22% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCccccccCccccCCC-----CCCCEEEccCCcCCccc
Q 037325 311 KLCNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGILPISLGSL-----KNLRHLVLWQNSFLGSI 383 (598)
Q Consensus 311 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~ls~n~l~~~~ 383 (598)
.+++|++|++++|++++..|..+ ..++ +|++|++++|.+++. |..++.+ ++|++|++++|++.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 34455555555555544444332 3333 455555555555543 4333333 55555555555555444
Q ss_pred hhhccCCCCCCEEeCcCCcCCcccC-CCchhhhcCCCCCCEEEccCccCcc--ccchHHHhcCCCCCEEEccCCcCcccC
Q 037325 384 PPSIGNLTLLKELYLASNQMNGQKI-SDSYQHLKNQTELRTLVLNKARISD--TISDWFWQLSLTLDELDVAYNELRGRV 460 (598)
Q Consensus 384 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~ls~n~~~~~~ 460 (598)
+..+..+++|++|++++|++.+... +.. ..+..+++|++|++++|++++ ..+..+...+++|++|++++|++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l---- 240 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL---- 240 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC----
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC----
Confidence 4555555555555555555443210 000 011444555555555555542 12222222234444444444444
Q ss_pred CCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCc-hhhcccCCCCCccccCCCCeEeCcCCccccccc
Q 037325 461 PNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN-DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP 539 (598)
Q Consensus 461 p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 539 (598)
++.+|. .+. .+++|+.|+|++|.++ .+|
T Consensus 241 ----------------------------------------~~~~~~~~~~----------~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 241 ----------------------------------------RDAAGAPSCD----------WPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp ----------------------------------------CSSCCCSCCC----------CCTTCCEEECTTSCCS-SCC
T ss_pred ----------------------------------------Ccccchhhhh----------hcCCCCEEECCCCccC-hhh
Confidence 433321 111 1566777777777776 666
Q ss_pred hhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 540 LLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 540 ~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6655 6777777777777754 55 6777777777777777764
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.2e-25 Score=228.87 Aligned_cols=248 Identities=23% Similarity=0.258 Sum_probs=137.8
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
...++..+..++ .+|..+. ++++.|++++|. +....+..|..+++|++|++++|.+.+..+..|..++ +|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~------~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA------NL 114 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS------SC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc------cC
Confidence 455666665555 4454333 456666666666 4444445556666666666666665555555555554 55
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|...+.+ +. ..+.+
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~--~~~~~-------- 183 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SE--GAFEG-------- 183 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CT--TTTTT--------
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-Cc--chhhc--------
Confidence 56666655555444444555555555555555555444444555555555555553322222 11 11333
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+++|++|++++|+++. +|. + ..+++|++|++++|++++..|
T Consensus 184 -----------------l~~L~~L~L~~n~l~~-~~~-~--------------------~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 184 -----------------LSNLRYLNLAMCNLRE-IPN-L--------------------TPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp -----------------CSSCCEEECTTSCCSS-CCC-C--------------------TTCSSCCEEECTTSCCCEECT
T ss_pred -----------------ccccCeecCCCCcCcc-ccc-c--------------------CCCcccCEEECCCCccCccCh
Confidence 4445555555554441 221 0 113456666666666665555
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 225 ~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 225 GSFQG----------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTT----------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcc----------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55544 666777777777776666666667777777777777776555555666677777777777653
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.2e-25 Score=229.70 Aligned_cols=248 Identities=23% Similarity=0.253 Sum_probs=138.9
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
...++.++..++ .+|..+. +++++|++++|. +.+..+..|..+++|++|++++|.+.+..+..+..++ +|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA------SL 125 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc------cC
Confidence 345555555554 3443332 455555555555 3444445555555555555555555554444444444 45
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|...
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l--------------------- 184 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL--------------------- 184 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------------------
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------------------
Confidence 55555555555444444445555555555555554333334444555555555443222
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+.++...+..+++|++|++++|++++. |. + ..+++|++|++++|++++..|
T Consensus 185 -------~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~--------------------~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 185 -------EYISEGAFEGLFNLKYLNLGMCNIKDM-PN-L--------------------TPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------CEECTTTTTTCTTCCEEECTTSCCSSC-CC-C--------------------TTCTTCCEEECTTSCCSEECG
T ss_pred -------cccChhhccCCCCCCEEECCCCccccc-cc-c--------------------cccccccEEECcCCcCcccCc
Confidence 222221112244555555555555421 21 0 123467777777777776666
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 236 ~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHG----------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTT----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccccC----------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66655 677777777777777777777777777788888877777666666777777778888777754
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-27 Score=231.74 Aligned_cols=252 Identities=21% Similarity=0.144 Sum_probs=169.3
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCC
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNL 369 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 369 (598)
++..+++.+. +.......+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+ +..+++|
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~--~~~l~~L 82 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD--LESLSTL 82 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT------TCCEEECTTSCCEEEEE--ETTCTTC
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC------cCCEEECCCCcCCcchh--hhhcCCC
Confidence 4444555555 3333334445556677777777777666666666665 67777777776665433 6666677
Q ss_pred CEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEE
Q 037325 370 RHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449 (598)
Q Consensus 370 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 449 (598)
++|++++|++++.. ..++|++|++++|.+++.. + ..+++|+.|++++|++++..+..+.. +++|++|
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L 149 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS-C------SRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYL 149 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE-E------CCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEE
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcC-c------cccCCCCEEECCCCCCCCccchhhhc-cCCCCEE
Confidence 77777776665322 2266666677666666543 1 22455666666666666554444433 4556666
Q ss_pred EccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeC
Q 037325 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVI 529 (598)
Q Consensus 450 ~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~L 529 (598)
++++|.+++..+..+ ...+++|++|++++|++++. |... .+++|+.|+|
T Consensus 150 ~Ls~N~l~~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~-~~~~-----------~l~~L~~L~L 198 (317)
T 3o53_A 150 DLKLNEIDTVNFAEL-------------------AASSDTLEHLNLQYNFIYDV-KGQV-----------VFAKLKTLDL 198 (317)
T ss_dssp ECTTSCCCEEEGGGG-------------------GGGTTTCCEEECTTSCCCEE-ECCC-----------CCTTCCEEEC
T ss_pred ECCCCCCCcccHHHH-------------------hhccCcCCEEECCCCcCccc-cccc-----------ccccCCEEEC
Confidence 666666554333222 11246889999999998854 3221 2789999999
Q ss_pred cCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc-ccCCcCccCcCCC
Q 037325 530 SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS-GKLPLSLKNCTFQ 596 (598)
Q Consensus 530 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~P~~~~~~~~L 596 (598)
++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|
T Consensus 199 s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 999999 56666999999999999999999 68999999999999999999998 7888877766543
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.2e-28 Score=261.48 Aligned_cols=437 Identities=14% Similarity=0.076 Sum_probs=280.9
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc---c------------chhccCCCCCCEEEccCCCCCCCccCh
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT---I------------PQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~------------p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.++++.+... .....+..+++|++|+++++..... . +.....+++|++|++++|.+. ....
T Consensus 47 ~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~ 122 (594)
T 2p1m_B 47 KVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCL 122 (594)
T ss_dssp EEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHH
T ss_pred EEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHH
Confidence 5566554332 2344567789999999999753211 1 122356889999999998643 2223
Q ss_pred hhhc-CCCCCcEEEcCCC-CCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC---CCcCCCCCccEEEccCCC--CCC
Q 037325 182 EWLS-GLSSLVYFNLGGA-DLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS---FPSLNFASLQVLDLSNND--FNS 254 (598)
Q Consensus 182 ~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~--l~~ 254 (598)
..+. .+++|++|++++| .+.... +...+..+++|++|++++|.+++.... .....+++|++|++++|. ++.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~--l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDG--LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHH--HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHH--HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 3343 6899999999998 444321 145556899999999999987765421 223367899999999986 322
Q ss_pred C-cchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCc--C---ccccchhhcCCCCCCEE-ecccccCCc
Q 037325 255 T-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF--L---GGQLSRNLGKLCNLRTM-ILSRNNISS 327 (598)
Q Consensus 255 ~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~--~---~~~~~~~l~~l~~L~~L-~l~~n~l~~ 327 (598)
. +.....++++|++|++++|...+.++..+..+++|++|++..+.. . -..++..+.++++|+.+ .+.+... +
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-G
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-h
Confidence 1 222335679999999999843334777778899999999776641 0 02345577899999999 4443321 2
Q ss_pred ccchhhhCCCCCCCCCCccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCcc-chhhccCCCCCCEEeCcC-----
Q 037325 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGS-IPPSIGNLTLLKELYLAS----- 400 (598)
Q Consensus 328 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~----- 400 (598)
..+..+..++ +|++|++++|.+++... ..+..+++|+.|++++| +.+. ++.....+++|++|++.+
T Consensus 280 ~l~~~~~~~~------~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 280 YLPAVYSVCS------RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp GGGGGHHHHT------TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred hHHHHHHhhC------CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 2333333444 89999999998765432 23568899999999998 4432 333334689999999943
Q ss_pred ----CcCCcccCCCchhhh-cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc--C----CcCcccCCC-----Cc
Q 037325 401 ----NQMNGQKISDSYQHL-KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA--Y----NELRGRVPN-----SL 464 (598)
Q Consensus 401 ----n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls--~----n~~~~~~p~-----~~ 464 (598)
+.+++.. +..+ ..+++|+.|.+..|.+++.....+...+++|++|+++ + +.+++...+ .+
T Consensus 353 ~~~~~~l~~~~----l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 353 MEPNVALTEQG----LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp SSCSSCCCHHH----HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred cccCCCCCHHH----HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 3444322 2233 3589999999999999888777777668999999999 3 444421111 12
Q ss_pred ccC-CCCEEEcccCcCcccCCC----CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc
Q 037325 465 GFN-FPAKVDLSFNNFEGRLLL----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP 539 (598)
Q Consensus 465 ~~~-~L~~l~ls~n~l~~~~~~----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 539 (598)
... .|+.|++++ .+++..+. .+++|+.|++++|.+++..+..+.. .+++|+.|+|++|.+++..+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~---------~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS---------GCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH---------HCTTCCEEEEESCSCCHHHH
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh---------cCCCcCEEECcCCCCcHHHH
Confidence 222 677777766 44432222 1466777777777776554444411 16777777777777754433
Q ss_pred h-hccCCCCCCEEECCCCcCccccchhc-cCCCCCCEEEccCCC
Q 037325 540 L-LFSNISFLYILDMSNNSLSGSTPESI-GSLRTVKFLVLRNNY 581 (598)
Q Consensus 540 ~-~~~~l~~L~~L~ls~N~l~~~~p~~l-~~l~~L~~L~l~~n~ 581 (598)
. .+..+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 3 33456777777777777754434444 345666555555543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.8e-25 Score=218.33 Aligned_cols=207 Identities=24% Similarity=0.216 Sum_probs=100.2
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|..+....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34555555555554444444445555555555555554444444555555555555555322223344444555555555
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcCCEECHhHhhCCc------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 555555544444444444 45555555555554433344555555555555555553333344555555555555
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~ 457 (598)
+|.+++.. +. .+..+++|+.|++++|++++..+..+.. +++|++|++++|++.
T Consensus 186 ~n~l~~~~-~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 186 QNRVAHVH-PH---AFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCCEEC-TT---TTTTCTTCCEEECCSSCCSCCCHHHHTT-CTTCCEEECCSSCEE
T ss_pred CCcccccC-Hh---HccCcccccEeeCCCCcCCcCCHHHccc-CcccCEEeccCCCcc
Confidence 55554443 21 2344455555555555555443333332 445555555555544
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3e-25 Score=216.73 Aligned_cols=254 Identities=21% Similarity=0.219 Sum_probs=169.1
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
+.++.+++.+.... .. -.++|++|++++|.+++.++ ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~ip----~~--~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP----VG--IPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCC----TT--CCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCC----cC--CCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 34555555554442 11 13466666676666666554 4456667777777777777766666677777777777
Q ss_pred ccCCc-ccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSND-LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|. +....+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|+
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~ 159 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG------NLTHLF 159 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEE
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC------CccEEE
Confidence 77776 554446667777777777777777 4555566677777777777777777766666666665 677888
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+++|.+++..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+++.. + ..+..+++|+.|++++|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~---~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-T---EALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-H---HHHTTCTTCCEEECCSS
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-H---HHcccCcccCEEeccCC
Confidence 8877777655556777778888888888877777777777788888888888777543 2 34667777888888888
Q ss_pred cCccccch-HHHhcCCCCCEEEccCCcCcccCCCCcc
Q 037325 430 RISDTISD-WFWQLSLTLDELDVAYNELRGRVPNSLG 465 (598)
Q Consensus 430 ~l~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~p~~~~ 465 (598)
.+....+. ++.. .++.+..+.+.+.+..|..+.
T Consensus 236 ~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 236 PWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGT
T ss_pred CccCCCCcHHHHH---HHHhcccccCccccCCchHhC
Confidence 77654332 2222 244445666777766666554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.8e-27 Score=231.81 Aligned_cols=266 Identities=22% Similarity=0.221 Sum_probs=160.1
Q ss_pred CCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchh
Q 037325 55 SSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEF 133 (598)
Q Consensus 55 ~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~ 133 (598)
..| ....|+.+..+.......+++.+++++ +.+ .+|..+... |++|+|++|.+....+|..
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~--------------n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~ 83 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRV--------------DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSR 83 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHC--------------CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHH
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeecc--------------ccc--ccHHHHHHH--HhhcccccccccCCCcCHH
Confidence 456 334555555544332233455555555 455 555555443 6677777777643345555
Q ss_pred cc-------CCCCCCEEECcCCCCCcccchhc--cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCc
Q 037325 134 IG-------SLKELRYLNLSGSFFSGTIPQTL--GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAG 204 (598)
Q Consensus 134 ~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 204 (598)
+. ++++|++|++++|++++.+|..+ ..+++|++|++++|.+ .+.
T Consensus 84 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------------------~~~- 136 (312)
T 1wwl_A 84 ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--------------------------ATR- 136 (312)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--------------------------SSS-
T ss_pred HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC--------------------------cch-
Confidence 54 56777777777777776666654 5666666666665544 333
Q ss_pred ccchHhhhcC-----CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--cchhh--hcCCCCCEEEccCCc
Q 037325 205 AYWLEVFNKL-----HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST--TPHWL--FNITSLLCLDLGSND 275 (598)
Q Consensus 205 ~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~ 275 (598)
+..+..+ ++|++|++++|.+++.++ ..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.
T Consensus 137 ---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 137 ---DAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp ---SSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred ---hHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 1222222 566666666666666554 4555666777777777766543 22333 566777777777777
Q ss_pred ccc--cCC-ccccCCCCccEEECcCCCcCccccc-hhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 276 LQG--DIP-DGFASLNSLQELDLSGNSFLGGQLS-RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 276 l~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
+++ .++ ..+..+++|++|++++|. +.+..| ..+..+++|++|++++|.++ .+|..+. + +|++|+++
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~------~L~~L~Ls 282 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A------KLSVLDLS 282 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S------EEEEEECC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C------CceEEECC
Confidence 662 112 223456777777777777 444332 34555677777777777776 3343332 2 68888888
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCc
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLG 381 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 381 (598)
+|++++. |. +..+++|++|++++|++++
T Consensus 283 ~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 283 YNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888765 54 7788888888888888764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-25 Score=234.82 Aligned_cols=234 Identities=21% Similarity=0.193 Sum_probs=141.1
Q ss_pred CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC
Q 037325 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN 368 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 368 (598)
+|++|++++|. +.+..|..+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ .++
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~------~L~~L~Ls~N~l~~l~~-----~~~ 100 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS------TLRTLDLNNNYVQELLV-----GPS 100 (487)
T ss_dssp GCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT------TCCEEECCSSEEEEEEE-----CTT
T ss_pred CccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC------CCCEEEecCCcCCCCCC-----CCC
Confidence 56666666665 444445555556666666666665554443 33333 55566666555553221 255
Q ss_pred CCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCE
Q 037325 369 LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDE 448 (598)
Q Consensus 369 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 448 (598)
|+.|++++|.+.+..+. .+++|+.|++++|.+++.. +. .+..+++|+.|++++|.+++..|..+...++.|++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-DL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG-GB---CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC-ch---hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 55555555555543332 2345555555555555443 21 13344555555555555555544444433445555
Q ss_pred EEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeE
Q 037325 449 LDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 449 L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
|++++|.+++. .+. .+++|+.|++++|++++ +|+.+.. +++|+.|
T Consensus 174 L~Ls~N~l~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~----------l~~L~~L 219 (487)
T 3oja_A 174 LNLQYNFIYDV-----------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQS----------AAGVTWI 219 (487)
T ss_dssp EECTTSCCCEE-----------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGG----------GTTCSEE
T ss_pred EecCCCccccc-----------------------cccccCCCCCEEECCCCCCCC-CCHhHcC----------CCCccEE
Confidence 55555554432 111 25678888888888885 4445665 7888899
Q ss_pred eCcCCccccccchhccCCCCCCEEECCCCcCc-cccchhccCCCCCCEEEcc
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDMSNNSLS-GSTPESIGSLRTVKFLVLR 578 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~l~~l~~L~~L~l~ 578 (598)
+|++|.++ .+|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99998888 47888888888899999988887 6677888888888888775
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=234.41 Aligned_cols=228 Identities=21% Similarity=0.143 Sum_probs=143.4
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCC
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 393 (598)
+|++|++++|.+.+..+..+..++ +|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT------TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC------CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc
Confidence 555555555555555554555444 55555555555554333 455555555555555554221 11455
Q ss_pred CEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEE
Q 037325 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVD 473 (598)
Q Consensus 394 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ 473 (598)
++|++++|.+++.. + ..+++|+.|++++|.+++..|..+.. +++|++|++++|.+++..|..+.
T Consensus 102 ~~L~L~~N~l~~~~-~------~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~-------- 165 (487)
T 3oja_A 102 ETLHAANNNISRVS-C------SRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELA-------- 165 (487)
T ss_dssp CEEECCSSCCCCEE-E------CCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGG--------
T ss_pred CEEECcCCcCCCCC-c------cccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHh--------
Confidence 55555555554433 1 12344555555555555444433332 34445555555444443332221
Q ss_pred cccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEEC
Q 037325 474 LSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553 (598)
Q Consensus 474 ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 553 (598)
..+++|+.|+|++|.+++. |. . ..+++|+.|+|++|.+++ +|..++.+++|+.|++
T Consensus 166 -----------~~l~~L~~L~Ls~N~l~~~-~~-~----------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 166 -----------ASSDTLEHLNLQYNFIYDV-KG-Q----------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp -----------GGTTTCCEEECTTSCCCEE-EC-C----------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred -----------hhCCcccEEecCCCccccc-cc-c----------ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 1257899999999999865 22 1 127999999999999995 5556999999999999
Q ss_pred CCCcCccccchhccCCCCCCEEEccCCCCc-ccCCcCccCcCC
Q 037325 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLS-GKLPLSLKNCTF 595 (598)
Q Consensus 554 s~N~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~P~~~~~~~~ 595 (598)
++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 9999995 8888999999999999999998 777777766543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=203.45 Aligned_cols=215 Identities=25% Similarity=0.277 Sum_probs=134.3
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE 139 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 139 (598)
.++|.|.|+.|.- .+.++.+++++ ++++. +|..+. +++++|++++|+++.. .+..+.++++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------------~~l~~-ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~ 62 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS--------------KKLTA-IPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTK 62 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT--------------SCCSS-CCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC--------------CCCCc-cCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCC
Confidence 4789999988853 23456788887 56663 555443 6899999999999865 5557888999
Q ss_pred CCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCE
Q 037325 140 LRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219 (598)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 219 (598)
|++|++++|.++...+..|..+++|++|++++|.+.... ...+.++++|++|++++|.+.... +..+..+++|++
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~ 137 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLTY 137 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeC---HHHhCcCcCCCE
Confidence 999999999998544445677888888888887654322 233556666666666666665554 334555555555
Q ss_pred EEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 220 L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.+++.+. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 138 L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 138 LSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5555555555544 334445555555555555554444445555555555555555553333334445555555555554
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.3e-24 Score=219.60 Aligned_cols=213 Identities=21% Similarity=0.227 Sum_probs=127.8
Q ss_pred EEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCC----ccccCCC-CccEEECcCCCcCccccchhhcCC-----C
Q 037325 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIP----DGFASLN-SLQELDLSGNSFLGGQLSRNLGKL-----C 313 (598)
Q Consensus 244 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l-----~ 313 (598)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|. +++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 35677777777777776666678888888888776555 5566666 78888888877 455445555443 7
Q ss_pred CCCEEecccccCCcccchhhhCC-CCCCCCCCccEEEccCccccccCcccc----CC-CCCCCEEEccCCcCCccc----
Q 037325 314 NLRTMILSRNNISSEVSDFLDGL-SECTNSILLEKLELRFNQFTGILPISL----GS-LKNLRHLVLWQNSFLGSI---- 383 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l-~~~~~~~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~ls~n~l~~~~---- 383 (598)
+|++|++++|.+++..+..+... .... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIP--FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSC--TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCC--CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 77777777777776665533322 0000 167777777777765544332 23 257777777777776433
Q ss_pred hhhccCCC-CCCEEeCcCCcCCcccCCCchhhhcCC-CCCCEEEccCccCcccc----chHHHhcCCCCCEEEccCCcCc
Q 037325 384 PPSIGNLT-LLKELYLASNQMNGQKISDSYQHLKNQ-TELRTLVLNKARISDTI----SDWFWQLSLTLDELDVAYNELR 457 (598)
Q Consensus 384 ~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~ls~n~~~ 457 (598)
+..+...+ +|++|++++|.+++.........+..+ ++|+.|++++|++++.. +..+....++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33334444 677777777777654411111234444 36777777777766532 2333332346666666666665
Q ss_pred cc
Q 037325 458 GR 459 (598)
Q Consensus 458 ~~ 459 (598)
+.
T Consensus 239 ~~ 240 (362)
T 3goz_A 239 GP 240 (362)
T ss_dssp CC
T ss_pred cH
Confidence 43
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.2e-24 Score=219.95 Aligned_cols=271 Identities=18% Similarity=0.144 Sum_probs=178.5
Q ss_pred EEEccCCcccccCCccccCCCCccEEECcCCCcCccccc----hhhcCCC-CCCEEecccccCCcccchhhhCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS----RNLGKLC-NLRTMILSRNNISSEVSDFLDGLSECTNS 342 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 342 (598)
.+.++.|.+++.+|..+...++|++|++++|. +....+ ..+..++ +|++|++++|.+++..+..+..+-.. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA-IP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT-SC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc-cC
Confidence 46788888888888777777779999999998 555555 6777888 89999999999988777666553000 00
Q ss_pred CCccEEEccCccccccCcccc----CCC-CCCCEEEccCCcCCccchhhc----cC-CCCCCEEeCcCCcCCcccCCCch
Q 037325 343 ILLEKLELRFNQFTGILPISL----GSL-KNLRHLVLWQNSFLGSIPPSI----GN-LTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 343 ~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~ls~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.......
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 179999999998887666533 344 789999999998876665443 33 35888899988888754422222
Q ss_pred hhhcCCC-CCCEEEccCccCccccchHHHhc---C-CCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCC
Q 037325 413 QHLKNQT-ELRTLVLNKARISDTISDWFWQL---S-LTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWS 487 (598)
Q Consensus 413 ~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~---~-~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~ 487 (598)
..+...+ +|++|++++|++++..+..+... + ++|++|++++|.+++.....+.. .+....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---------------~l~~~~ 224 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---------------IFSSIP 224 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------HHHHSC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---------------HHhcCC
Confidence 3345554 88888888888887766554432 3 47888888888776532211110 000012
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccc-------cchhccCCCCCCEEECCCCcCcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE-------IPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
++|++||+++|++++..+..+.. .+..+++|+.|+|++|.+.+. ++..+.++++|++||+++|++.+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKL------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHH------TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCceEEECcCCCCCcHHHHHHHH------HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 36777777777776554433332 113356777777777774432 33456677777777777777765
Q ss_pred c
Q 037325 561 S 561 (598)
Q Consensus 561 ~ 561 (598)
.
T Consensus 299 ~ 299 (362)
T 3goz_A 299 S 299 (362)
T ss_dssp G
T ss_pred c
Confidence 5
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.5e-24 Score=213.13 Aligned_cols=270 Identities=21% Similarity=0.245 Sum_probs=172.6
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCC--CCCCEEeCCCCCCCCCCcchhccCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQL--KDLEYLDLSMNNFTGFQVPEFIGSL 137 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~~~~l 137 (598)
..|.+|.++.|+ ...++.+|+++ +.+. +..+..+ +++++|++++|.+.+. .+. +..+
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~--------------~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~ 92 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTG--------------KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSP 92 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTT--------------CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCC
T ss_pred HHHHHHHHHhcC--chhheeecccc--------------ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccC
Confidence 445669888875 34577889987 4554 3456666 8999999999999864 444 5679
Q ss_pred CCCCEEECcCCCCCcc-cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCC-CCCCCcccchHhhhcCC
Q 037325 138 KELRYLNLSGSFFSGT-IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGA-DLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~ 215 (598)
++|++|++++|.+++. +|..+..+++|++|++++|.+. ......+..+++|++|++++| .+++.. ++..+..++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~--l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHH--HHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCCCCCCHHH--HHHHHhcCC
Confidence 9999999999998865 8888899999999999988543 233445777888888888888 565421 145567777
Q ss_pred CCCEEEcCCC-CCCCCCCCCCcCCCC-CccEEEccCC--CCC-CCcchhhhcCCCCCEEEccCCc-ccccCCccccCCCC
Q 037325 216 SFVELHLPNC-NLPSLPLSFPSLNFA-SLQVLDLSNN--DFN-STTPHWLFNITSLLCLDLGSND-LQGDIPDGFASLNS 289 (598)
Q Consensus 216 ~L~~L~l~~~-~l~~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~ 289 (598)
+|++|++++| .+++......+..++ +|++|++++| .++ +.++..+.++++|+.|++++|. +++..+..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 7777777777 666432113344556 6777777776 344 3445555666667777776666 55455555666666
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l 363 (598)
|++|++++|..........+..+++|+.|++++| +.......+.. .++.|++++|++++..|..+
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--------~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--------ALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--------HSTTSEESCCCSCCTTCSSC
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--------hCcceEEecccCccccCCcc
Confidence 6666666664122222234555666666666665 33222222211 24444455555555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.2e-22 Score=194.77 Aligned_cols=178 Identities=28% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCC
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS 216 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 216 (598)
+++|++|++++|.++ .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLP---NGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSCCCCCC---TTTTTTCTT
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCccC---hhHhcCCcC
Confidence 444444444444443 222 233444444444444332211 12333444444444444444332 223344444
Q ss_pred CCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 217 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
|++|++++|.+++.++ ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 111 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 4444444444444433 233344444555554444444444444444444444444444443333334444444444444
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccC
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNI 325 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 325 (598)
+|. +.+..+..+..+++|++|++++|.+
T Consensus 190 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 190 QNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-CCccCHHHHhCCcCCCEEEccCCCc
Confidence 444 2333333344444444444444433
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.7e-22 Score=191.53 Aligned_cols=205 Identities=23% Similarity=0.267 Sum_probs=97.5
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC
Confidence 45555555555554444455555555555555555554444445555555555555555 33334444555555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-CccccCCCCCCCEEEccCCcCCccchhhccCCCCCC----E
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK----E 395 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~----~ 395 (598)
++|.+.+..+..+..++ +|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +
T Consensus 108 ~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 108 VETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCccccCchhcccCC------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 55555444333333333 455555555555432 344455555555555555555544333343333333 4
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
|++++|.+++.. +. .....+|+.|++++|++++..+..+.. +++|++|++++|++.+
T Consensus 182 L~ls~n~l~~~~-~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 182 LDLSLNPMNFIQ-PG----AFKEIRLKELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCCEEC-TT----SSCSCCEEEEECCSSCCSCCCTTTTTT-CCSCCEEECCSSCBCC
T ss_pred eecCCCcccccC-cc----ccCCCcccEEECCCCceeecCHhHhcc-cccccEEEccCCcccc
Confidence 555555554432 21 111224444555554444333322222 3444444444444443
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6.6e-22 Score=192.00 Aligned_cols=206 Identities=22% Similarity=0.218 Sum_probs=130.5
Q ss_pred CcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
|++|++++|.+.... +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 30 l~~L~ls~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 30 TKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CCEEECTTCCCCEEC---TTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccEEECCCCcccccC---HhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 444444444444432 2345556666666666666655544 445566777777777777776666667777777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCcc---
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE--- 346 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~--- 346 (598)
++++|.+.+..+..+..+++|++|++++|.+....+|..+..+++|++|++++|++++..+..+..+. +|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~l~ 179 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------QMPLLN 179 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH------TCTTCC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh------hccccc
Confidence 77777777555556777777777777777743334567777777777777777777766655555444 343
Q ss_pred -EEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 347 -KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 347 -~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 180 l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 67777777765444333 334677777777777655444556677777777777766543
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.9e-23 Score=211.91 Aligned_cols=248 Identities=20% Similarity=0.233 Sum_probs=169.5
Q ss_pred cccchhhcCCCCCCEEecccccCCcccchh----hhCCCCCCCCCCccEEEccCc---cccccCcccc-------CCCCC
Q 037325 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDF----LDGLSECTNSILLEKLELRFN---QFTGILPISL-------GSLKN 368 (598)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~~~~~~~L~~L~Ls~n---~l~~~~~~~l-------~~l~~ 368 (598)
..++..+..+++|++|++++|.+.+..+.. +..++ +|++|++++| .+.+.+|..+ ..+++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~------~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT------TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC------CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 345666777888899999888888765544 33444 7888888885 3444555444 67788
Q ss_pred CCEEEccCCcCCc----cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC---------CCCCEEEccCccCccc-
Q 037325 369 LRHLVLWQNSFLG----SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ---------TELRTLVLNKARISDT- 434 (598)
Q Consensus 369 L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~---------~~L~~L~l~~n~l~~~- 434 (598)
|++|++++|.+.+ .++..+..+++|++|++++|.+++.........+..+ ++|++|++++|++++.
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 8888888888876 3666777788888888888887643311111223333 6788888888877633
Q ss_pred cch---HHHhcCCCCCEEEccCCcCccc-----CCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccc----c
Q 037325 435 ISD---WFWQLSLTLDELDVAYNELRGR-----VPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFS----G 502 (598)
Q Consensus 435 ~~~---~~~~~~~~L~~L~ls~n~~~~~-----~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~----~ 502 (598)
++. .+. .+++|++|++++|.++.. .|..+ ..+++|+.|+|++|+++ +
T Consensus 176 ~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l--------------------~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 176 MKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGL--------------------AYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTG--------------------GGCTTCCEEECCSSCCHHHHHH
T ss_pred HHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHh--------------------hcCCCccEEECcCCCCCcHHHH
Confidence 332 222 356777777777766521 11111 12467888888888885 4
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccc----cchhc--cCCCCCCEEECCCCcCcc----ccchhc-cCCCC
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE----IPLLF--SNISFLYILDMSNNSLSG----STPESI-GSLRT 571 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~----~~p~~l-~~l~~ 571 (598)
.+|..+.. +++|+.|+|++|.+++. +|..+ +++++|++|+|++|++++ .+|..+ .++++
T Consensus 235 ~l~~~l~~----------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 235 ALAIALKS----------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp HHHHHGGG----------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcc----------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 56666655 78888888888888765 56666 348888888888888887 477777 66788
Q ss_pred CCEEEccCCCCcccCC
Q 037325 572 VKFLVLRNNYLSGKLP 587 (598)
Q Consensus 572 L~~L~l~~n~l~g~~P 587 (598)
|++|++++|++++..|
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 8888888888887654
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.9e-24 Score=217.07 Aligned_cols=209 Identities=24% Similarity=0.232 Sum_probs=123.0
Q ss_pred CCCccEEEccCCCCCC----CcchhhhcCCCCCEEEccCCcccccCCcccc----CC---------CCccEEECcCCCcC
Q 037325 239 FASLQVLDLSNNDFNS----TTPHWLFNITSLLCLDLGSNDLQGDIPDGFA----SL---------NSLQELDLSGNSFL 301 (598)
Q Consensus 239 l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~~~ 301 (598)
+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3444455555555444 2455556666666666666666533222222 22 67777777777743
Q ss_pred ccccc---hhhcCCCCCCEEecccccCCcc-----cchhhhCCCCCCCCCCccEEEccCcccc----ccCccccCCCCCC
Q 037325 302 GGQLS---RNLGKLCNLRTMILSRNNISSE-----VSDFLDGLSECTNSILLEKLELRFNQFT----GILPISLGSLKNL 369 (598)
Q Consensus 302 ~~~~~---~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~l~~L 369 (598)
...++ ..+..+++|++|++++|++... .+..+..++ +|++|++++|.++ +.+|..+..+++|
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ------ELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT------TCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC------CccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 24444 3556677777777777777632 121344444 6777777777775 4566667777778
Q ss_pred CEEEccCCcCCcc----chhhcc--CCCCCCEEeCcCCcCCcccCCCchhhh-cCCCCCCEEEccCccCccccc--hHHH
Q 037325 370 RHLVLWQNSFLGS----IPPSIG--NLTLLKELYLASNQMNGQKISDSYQHL-KNQTELRTLVLNKARISDTIS--DWFW 440 (598)
Q Consensus 370 ~~L~ls~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~--~~~~ 440 (598)
++|++++|++++. ++..+. .+++|++|++++|.+++..+......+ .++++|+.|++++|++++..+ ..+.
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 326 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH
Confidence 8888888877655 445553 377788888888877752100111223 446777888888887776663 4444
Q ss_pred hcCCCCCEEEccC
Q 037325 441 QLSLTLDELDVAY 453 (598)
Q Consensus 441 ~~~~~L~~L~ls~ 453 (598)
..++.+...++..
T Consensus 327 ~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 327 EVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHTCCEECC
T ss_pred HHhhhcCcchhhh
Confidence 4444544444433
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.9e-22 Score=191.72 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=118.6
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
...+++|++|++++|.++..+ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344555666666666555543 244556666666666666542 245566666666666666665444555666666
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|+
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------NLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------cCCEEECCCCCcCccCHHHhcCCccCC
Confidence 666666666 4444444555666666666666666655554455444 566666666666655554556666666
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHH
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 439 (598)
+|++++|++.+..+..+..+++|++|++++|.+.+. ++.|+.+++..|.++|.+|..+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----------CcHHHHHHHHHHhCCCcccCcc
Confidence 666666666655555556666666666666655432 2345555555555555555443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=4.4e-21 Score=186.99 Aligned_cols=204 Identities=22% Similarity=0.177 Sum_probs=147.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGL 187 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 187 (598)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..|..+++|++|++++|.+..... ...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCC
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCC
Confidence 4678899999999999998 4676554 789999999999987778888999999999999887654332 2677
Q ss_pred CCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCC
Q 037325 188 SSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLL 267 (598)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 267 (598)
++|++|++++|.+... +..+..+++|++|++++|.++.+++ ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 77 ~~L~~L~Ls~N~l~~l----~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CcCCEEECCCCcCCcC----chhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 7888888888877755 3456667777777777777777665 4566677777777777777766666666777777
Q ss_pred EEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
.|++++|++++..+..+..+++|+.|++++|.+ ..+|..+...++|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCcc
Confidence 777777777644444456677777777777763 255555666666666666666554
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.6e-21 Score=184.65 Aligned_cols=182 Identities=26% Similarity=0.319 Sum_probs=99.4
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
+++++|++++|++++..+..+.++++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 345555555555554444445555555555555555553333334555555555555555 3333334455555566666
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 116 l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccCeeCHHHhCcCc------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 665555555555455444 56666666666654444445556666666666666665444455566666666666
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
+|.+++.. +. .+..+++|+.|++++|.+.
T Consensus 190 ~N~l~~~~-~~---~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 190 NNQLKRVP-EG---AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCC-TT---TTTTCTTCCEEECCSSCBC
T ss_pred CCcCCcCC-HH---HhccccCCCEEEecCCCee
Confidence 66665433 21 2445556666666666654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.2e-22 Score=201.50 Aligned_cols=257 Identities=20% Similarity=0.210 Sum_probs=198.7
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcC--CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC-cchhhhcCCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKL--HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST-TPHWLFNITS 265 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 265 (598)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. ...+++|++|++++|.+++. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 3566666666554 2445555 7888888888888877653 45789999999999998765 7778889999
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-ccchhhcCCCCCCEEecccc-cCCcc-cchhhhCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-QLSRNLGKLCNLRTMILSRN-NISSE-VSDFLDGLSECTNS 342 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~~~~~ 342 (598)
|++|++++|.+++..+..+..+++|++|++++|..+++ .++..+..+++|++|++++| .+++. .+..+..++.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~---- 195 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---- 195 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT----
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc----
Confidence 99999999998888888888899999999999932443 46777888999999999999 88765 3444554441
Q ss_pred CCccEEEccCc--ccc-ccCccccCCCCCCCEEEccCCc-CCccchhhccCCCCCCEEeCcCCc-CCcccCCCchhhhcC
Q 037325 343 ILLEKLELRFN--QFT-GILPISLGSLKNLRHLVLWQNS-FLGSIPPSIGNLTLLKELYLASNQ-MNGQKISDSYQHLKN 417 (598)
Q Consensus 343 ~~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 417 (598)
+|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. ++ +..+..+.+
T Consensus 196 -~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~ 270 (336)
T 2ast_B 196 -TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII----PETLLELGE 270 (336)
T ss_dssp -TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC----GGGGGGGGG
T ss_pred -CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC----HHHHHHHhc
Confidence 6999999999 455 4466677789999999999998 777777888999999999999995 32 444456788
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCccc
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF 466 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~ 466 (598)
+++|+.|++++| +++.....+.. .+..|++++|++++..|..++.
T Consensus 271 ~~~L~~L~l~~~-i~~~~~~~l~~---~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 271 IPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCEEeccCc-cCHHHHHHHHh---hCcceEEecccCccccCCcccc
Confidence 999999999999 55544343332 4666778999999888876654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=196.89 Aligned_cols=208 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred CCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCccccccCc----cccCCCCCCCEEEccCCcCCccchhh
Q 037325 313 CNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGILP----ISLGSLKNLRHLVLWQNSFLGSIPPS 386 (598)
Q Consensus 313 ~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~ls~n~l~~~~~~~ 386 (598)
++|++|++++|.+.+..+..+ ..++ +|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGL------ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCB------CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred CceeEEEeeCCEeccchhhhhhhccCC------CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 445566666655555555444 3333 56666666666554333 22345666666666666666555566
Q ss_pred ccCCCCCCEEeCcCCcCCccc--CCCchhhhcCCCCCCEEEccCccCcccc--chHHHhcCCCCCEEEccCCcCcccCCC
Q 037325 387 IGNLTLLKELYLASNQMNGQK--ISDSYQHLKNQTELRTLVLNKARISDTI--SDWFWQLSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+..+++|++|++++|++.+.. .+. ..+..+++|++|++++|+++... +..+...+++|++|++++|++++..|.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 666666666666666654421 010 11245566666666666665221 112222345556666555555544343
Q ss_pred CcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc
Q 037325 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF 542 (598)
Q Consensus 463 ~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 542 (598)
. +.. +..+++|++|+|++|+++ .+|..+
T Consensus 243 ~--------------------------------------------~~~-------~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 243 S--------------------------------------------APR-------CMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp C--------------------------------------------CSS-------CCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred h--------------------------------------------HHh-------ccCcCcCCEEECCCCCCC-chhhhh
Confidence 2 222 001246666666666666 555555
Q ss_pred cCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 543 ~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
. ++|++|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 271 ~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred c--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 3 566666666666664 233 4556666677777776653
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=192.77 Aligned_cols=206 Identities=18% Similarity=0.183 Sum_probs=151.0
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCc-CCCCCccEEEccCCCCCCCcc----hhhhcCCCCCEEEccCCcccccCCccccCC
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPS-LNFASLQVLDLSNNDFNSTTP----HWLFNITSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
.+++|++|++++|.+++..+...+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456688888888888776663332 778899999999999887554 344578899999999999987777888899
Q ss_pred CCccEEECcCCCcCcc-cc--chhhcCCCCCCEEecccccCCcccch---hhhCCCCCCCCCCccEEEccCccccccCcc
Q 037325 288 NSLQELDLSGNSFLGG-QL--SRNLGKLCNLRTMILSRNNISSEVSD---FLDGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~-~~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
++|++|++++|++.+. .+ +..+..+++|++|++++|+++..... .+..++ +|++|++++|.+++..|.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------QPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC------CCSSEECTTSCCCCCCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC------CCCEEECCCCCCCccchh
Confidence 9999999999984321 12 23346788899999999988643221 234555 788888888888877676
Q ss_pred ccCCC---CCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcc
Q 037325 362 SLGSL---KNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433 (598)
Q Consensus 362 ~l~~l---~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 433 (598)
.+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++.. . +..+++|+.|++++|++++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~----~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q----PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C----TTSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h----hhhCCCccEEECcCCCCCC
Confidence 66665 58888888888888 5666553 68888888888887642 1 3455677777777777654
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.6e-20 Score=182.92 Aligned_cols=203 Identities=25% Similarity=0.206 Sum_probs=150.7
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
+.+++++++++++++.++.++... .+++++|++++|.+++..+..+..+++|+.|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 445666777777777777665422 26788888888888877777888888888888888888753 32 2677888
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
++|++++|.+ ..+|..+..+++|++|++++|++++..+..|..++ +|++|++++|++++..+..+..+++|+
T Consensus 80 ~~L~Ls~N~l--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------ELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCcC--CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------CCCEEECCCCCCCccChhhcccccCCC
Confidence 8888888884 35677777888888888888888877777777776 788888888888866666677788888
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
.|++++|++++..+..+..+++|++|++++|+++.. |. .+...+.|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i--p~---~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI--PK---GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC--CT---TTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc--Ch---hhcccccCCeEEeCCCCcc
Confidence 888888888755555567788888888888888744 32 2445567778888877765
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.5e-21 Score=182.05 Aligned_cols=190 Identities=27% Similarity=0.347 Sum_probs=127.7
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE 139 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 139 (598)
.+||.|.|++|.. ..+.+++++ +++. .+|..+. +++++|+|++|.+.+. .+..+.++++
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~--------------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~ 60 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQG--------------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTK 60 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTT--------------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred ccCCCCCceEcCC---CCeEEecCC--------------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCccc
Confidence 3688999999953 233577776 4554 4555444 6899999999999876 6677889999
Q ss_pred CCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCE
Q 037325 140 LRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219 (598)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 219 (598)
|++|++++|.+++..|..+..+++|++|++++|.+.... +..+..+++|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------------~~~~~~l~~L~~ 111 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-----------------------------LGVFDHLTQLDK 111 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------------------TTTTTTCTTCCE
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-----------------------------hhHhcccCCCCE
Confidence 999999999998777777788888888888776554222 233444455555
Q ss_pred EEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 220 L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.++++++ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 112 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5555555554444 334556666666666666665555556666677777777777665555566667777777777776
Q ss_pred c
Q 037325 300 F 300 (598)
Q Consensus 300 ~ 300 (598)
+
T Consensus 191 ~ 191 (251)
T 3m19_A 191 F 191 (251)
T ss_dssp B
T ss_pred e
Confidence 3
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.9e-20 Score=183.04 Aligned_cols=193 Identities=22% Similarity=0.283 Sum_probs=108.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
..++++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.... .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~----~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS----AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG----GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch----hhcCCC
Confidence 4457788888888888773 44 46778888888888888874 444 777888888888777654332 356666
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+.. .+..+++|++|++++|.+++.++ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 108 ~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 6666666666665542 24555555555555555554432 3344555555555555543222 444455555
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccC
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNI 325 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 325 (598)
|++++|.+++..+ +..+++|++|++++|.+ .+.. .+..+++|+.|++++|.+
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l-~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQI-SDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCC-CBCG--GGTTCTTCCEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCcc-Cccc--cccCCCCCCEEEccCCee
Confidence 5555554442211 34444444444444442 2211 134444444444444443
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=9.8e-21 Score=179.47 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=128.6
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC-CCcccchhccCCCCCCEEEccC-CCCCCCccChhhhcCCCCCc
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF-FSGTIPQTLGNLSNLLYLDLNN-FLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~l~~L~ 191 (598)
+|++|++++|++++. .+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |.+.. .....+.++++|+
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCCCC
Confidence 677777777777743 33456677777777777775 6644444667777777777776 55432 2223466677777
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCC---EEEcCCC-CCCCCCCCCCcCCCCCcc-EEEccCCCCCCCcchhhhcCCCC
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFV---ELHLPNC-NLPSLPLSFPSLNFASLQ-VLDLSNNDFNSTTPHWLFNITSL 266 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L 266 (598)
+|++++|.+.... . +..+++|+ +|++++| .++.++. ..+..+++|+ +|++++|+++ .+|......++|
T Consensus 109 ~L~l~~n~l~~lp----~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L 181 (239)
T 2xwt_C 109 FLGIFNTGLKMFP----D-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181 (239)
T ss_dssp EEEEEEECCCSCC----C-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred EEeCCCCCCcccc----c-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence 7777777776642 2 55666666 7777777 7777665 4566777788 8888888777 344333333778
Q ss_pred CEEEccCCc-ccccCCccccCC-CCccEEECcCCCcCccccchhhcCCCCCCEEecccc
Q 037325 267 LCLDLGSND-LQGDIPDGFASL-NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323 (598)
Q Consensus 267 ~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 323 (598)
+.|++++|+ +++..+..+..+ ++|++|++++|++ . .+|.. .+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-T-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-C-CCCCT--TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-c-cCChh--HhccCceeeccCc
Confidence 888888884 775555667777 7888888888873 3 33433 5667788877665
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2e-19 Score=171.73 Aligned_cols=180 Identities=27% Similarity=0.308 Sum_probs=122.9
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEEC
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 295 (598)
..++++++++.++.++.... ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45667777777776664221 57778888888877777777777778888888887777666666777777777777
Q ss_pred cCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEcc
Q 037325 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375 (598)
Q Consensus 296 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 375 (598)
++|. +....+..+..+++|++|++++|++++..+..+..++ +|++|++++|.+++..+..+..+++|++|+++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 7777 4555555666777777777777777665555555555 67777777777765555556666777777777
Q ss_pred CCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 376 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++.+..+..+..+++|+.|++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7776655555566666677777766666544
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.8e-19 Score=177.42 Aligned_cols=208 Identities=25% Similarity=0.304 Sum_probs=116.5
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcC
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLG 196 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 196 (598)
.+.+..+.+.+. + ....+++|++|++++|.++ .+| .+..+++|++|++++|.+..... +..+++|++|+++
T Consensus 23 ~~~l~~~~~~~~-~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 23 KIAAGKSNVTDT-V--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELS 93 (308)
T ss_dssp HHHTTCSSTTSE-E--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECC
T ss_pred HHHhCCCCcCce-e--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEcc
Confidence 344555555532 1 2345788999999999887 455 57778888888888876543322 5666667777777
Q ss_pred CCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcc
Q 037325 197 GADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276 (598)
Q Consensus 197 ~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 276 (598)
+|.+.+. ..+..+++|++|++++|.+++.+. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 94 ~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 94 GNPLKNV-----SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp SCCCSCC-----GGGTTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCcCCCc-----hhhcCCCCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 6666554 235555556666665555555432 4445555555555555544322 44445555555555544
Q ss_pred cccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 277 QGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 277 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
++. +. +..+++|++|++++|.+++..+ +..++ +|++|++++|.++
T Consensus 164 ~~~-~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 164 SDL-TP--------------------------LANLSKLTTLKADDNKISDISP--LASLP------NLIEVHLKNNQIS 208 (308)
T ss_dssp CCC-GG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECTTSCCC
T ss_pred CCC-hh--------------------------hcCCCCCCEEECCCCccCcChh--hcCCC------CCCEEEccCCccC
Confidence 422 21 4444455555555554443322 33333 5556666666555
Q ss_pred ccCccccCCCCCCCEEEccCCcCC
Q 037325 357 GILPISLGSLKNLRHLVLWQNSFL 380 (598)
Q Consensus 357 ~~~~~~l~~l~~L~~L~ls~n~l~ 380 (598)
+.. .+..+++|+.|++++|+++
T Consensus 209 ~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 209 DVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp BCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccc--cccCCCCCCEEEccCCeee
Confidence 433 2555666666666666554
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4e-20 Score=195.29 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=148.7
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
+++.|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|.+++. |. +.. +|+.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i--p~----l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL--PE----LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC--CC----CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc--ch----hhc--CCCE
Confidence 69999999999986 66655 378999999999998 666 4578999999999999873 43 222 8999
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~ 503 (598)
|++++|++++ +|. .+++|++|++++|++++ +|. ....|+.|++++|++++ +|...++|+.|++++|+|+ .
T Consensus 125 L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-S 194 (571)
T ss_dssp EECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-S
T ss_pred EECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCC-c
Confidence 9999999988 444 37889999999999986 555 23378888888888887 4444478888888888888 6
Q ss_pred CCchhhcccCCCCCc-cccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCC
Q 037325 504 IPNDIGQNLPFLTDL-GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRT 571 (598)
Q Consensus 504 ~p~~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~ 571 (598)
+|. +.. .+ .....|+.|+|++|.|+ .+|..+.++++|+.|+|++|.+++.+|..+..+..
T Consensus 195 lp~-~~~------~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV------RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC--------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH------hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 665 421 00 11223388888888888 68888888888888888888888888888776543
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=8.4e-20 Score=173.04 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=46.8
Q ss_pred hhcCCCCCEEEcCCCC-CCCCCCCCCcCCCCCccEEEccC-CCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCC
Q 037325 211 FNKLHSFVELHLPNCN-LPSLPLSFPSLNFASLQVLDLSN-NDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 288 (598)
+..+++|++|++++|. ++.++. ..+..+++|++|++++ |++++..+..+.++++|++|++++|.+++ +|. +..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 3334444444444443 333332 2333444444444444 44443333344444444444444444442 332 34444
Q ss_pred Ccc---EEECcCC-CcCccccchhhcCCCCCC-EEecccccCC
Q 037325 289 SLQ---ELDLSGN-SFLGGQLSRNLGKLCNLR-TMILSRNNIS 326 (598)
Q Consensus 289 ~L~---~L~l~~n-~~~~~~~~~~l~~l~~L~-~L~l~~n~l~ 326 (598)
+|+ +|++++| . +....+..+..+++|+ +|++++|++.
T Consensus 128 ~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 128 STDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp BCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred ccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCc
Confidence 444 4444444 3 2222223344444444 4444444443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.9e-19 Score=163.31 Aligned_cols=162 Identities=24% Similarity=0.255 Sum_probs=105.1
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
.++|++|++++|++++. .+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.... ...+.++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCCC
Confidence 46899999999999864 5556788999999999999998555556778888888888887654322 23356666677
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
+|++++|.+.... +..+..+++|++|++++|.+++++. ..+..+++|++|++++|.+.+ .+++|+.|++
T Consensus 104 ~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 104 ELALNTNQLQSLP---DGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp EEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred EEEcCCCcCcccC---HhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 7777666666553 3345556666666666666665544 334455566666666664432 2345555555
Q ss_pred cCCcccccCCccccCC
Q 037325 272 GSNDLQGDIPDGFASL 287 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l 287 (598)
..|.++|.+|..++.+
T Consensus 173 ~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHCTTTBBCTTSSB
T ss_pred HHHhCCceeeccCccc
Confidence 5555555555555443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.4e-19 Score=178.94 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=104.4
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcc-hhccCCCCCCEEECcCCCCCcccch-hccCCCCCCEEEccCCCCCCCccCh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVP-EFIGSLKELRYLNLSGSFFSGTIPQ-TLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.+|..+ .+++++|+|++|+++. +| ..|.++++|++|+|++|++.+.+|. .|.++++++++...
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~----------- 87 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE----------- 87 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE-----------
T ss_pred ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc-----------
Confidence 345544 3678899999999884 55 4678889999999999988766654 45666666553322
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCC-CCCCCcchhh
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWL 260 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l 260 (598)
+.|++.... ++.|..+++|++|++++|.++..+. ..+....++..+++.++ ++....+..+
T Consensus 88 --------------~~N~l~~l~---~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 88 --------------KANNLLYIN---PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp --------------EETTCCEEC---TTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred --------------cCCcccccC---chhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccccch
Confidence 223333322 3344555555555555555555444 23333445556666443 4443333334
Q ss_pred hcCC-CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCccc
Q 037325 261 FNIT-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329 (598)
Q Consensus 261 ~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 329 (598)
..+. .++.|++++|+++ .++.......+|+++++.++..+....+..|..+++|++|++++|+++...
T Consensus 150 ~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred hhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 4332 4556666666665 333333344556666665433132222234555555555555555555433
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=4.6e-19 Score=187.13 Aligned_cols=203 Identities=24% Similarity=0.255 Sum_probs=122.1
Q ss_pred CcccE-EecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCE
Q 037325 64 SWSGV-SCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRY 142 (598)
Q Consensus 64 ~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~ 142 (598)
.|.++ .|. .++++.|++++ +++++ +|..+ +++|++|+|++|.++ .+| ..+++|++
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~--------------n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~ 104 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNR--------------LNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEY 104 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCS--------------SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCE
T ss_pred hhhhccccc--cCCccEEEeCC--------------CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCE
Confidence 68888 785 35789999998 67776 66655 388999999999998 467 45789999
Q ss_pred EECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEc
Q 037325 143 LNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222 (598)
Q Consensus 143 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l 222 (598)
|++++|++++ +|. +.. +|++|++++|.+...+. .+++|++|++++|.++... . .+++|++|++
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp----~---~l~~L~~L~L 167 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLP----E---LPTSLEVLSV 167 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCC----C---CCTTCCEEEC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCC----C---cCCCcCEEEC
Confidence 9999999985 777 655 78888888876644221 4566666666666665532 1 3445555555
Q ss_pred CCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCc
Q 037325 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302 (598)
Q Consensus 223 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 302 (598)
++|.+++++. +. ++|+.|++++|+++ .+|. +.. +| ....+.|+.|++++|.+ .
T Consensus 168 s~N~L~~lp~---l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l-~ 220 (571)
T 3cvr_A 168 RNNQLTFLPE---LP--ESLEALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRI-T 220 (571)
T ss_dssp CSSCCSCCCC---CC--TTCCEEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCC-C
T ss_pred CCCCCCCcch---hh--CCCCEEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcc-e
Confidence 5555555433 11 45555555555544 2222 221 22 00001115556655553 2
Q ss_pred cccchhhcCCCCCCEEecccccCCcccchhhhC
Q 037325 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335 (598)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 335 (598)
.+|..+..+++|+.|++++|.+++..|..+..
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 34555555556666666666665555554443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=7.3e-18 Score=169.21 Aligned_cols=241 Identities=19% Similarity=0.145 Sum_probs=162.5
Q ss_pred CEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccc-hhhhCCCCCCCCCCc
Q 037325 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS-DFLDGLSECTNSILL 345 (598)
Q Consensus 267 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~~~~L 345 (598)
++++.++++++ .+|..+ .+++++|++++|+ +....+..|.++++|++|++++|++.+.++ ..|..++ ++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~------~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP------KL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT------TC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch------hh
Confidence 56788888887 677655 3678999999998 454444578899999999999998876554 4566665 55
Q ss_pred c-EEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC-CcCCcccCCCchhhhcCC-CCCC
Q 037325 346 E-KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS-NQMNGQKISDSYQHLKNQ-TELR 422 (598)
Q Consensus 346 ~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~~-~~L~ 422 (598)
. .+.+..|+++...|..+..+++|++|++++|++....+..+....++..+++.+ +.+.... +.. +..+ ..++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~---f~~~~~~l~ 157 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNS---FVGLSFESV 157 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTS---STTSBSSCE
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccc---hhhcchhhh
Confidence 5 456677888877788888899999999999988866655566667788888865 4554433 322 3333 3577
Q ss_pred EEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCC-CcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN-SLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~-~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
.|++++|+++...+..+. ..+|+++++++++..+.+|. .+... .|+.|++++|+++...+..+.+|+.|.+.++.-
T Consensus 158 ~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp EEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT
T ss_pred hhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC
Confidence 888888888765444433 35688888876444445554 34443 777777777777754444566777777655543
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
-..+| .+..+++|+.++++++..
T Consensus 236 l~~lP-----------~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 236 LKKLP-----------TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCCCC-----------CTTTCCSCCEEECSCHHH
T ss_pred cCcCC-----------CchhCcChhhCcCCCCcc
Confidence 22444 223367777777766543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.3e-17 Score=154.25 Aligned_cols=110 Identities=30% Similarity=0.314 Sum_probs=44.3
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
..+++|++|++++|.+++++. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 333444444444444433332 2233344444444444444433333334444444444444444433333334444444
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccc
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 323 (598)
+|++++|. +.+..+..+..+++|++|++++|
T Consensus 128 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 128 DLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 44444444 22222223334444444444444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=155.19 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
+|++|++++|++++..|..+.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKG----------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTT----------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CCCEEECCCCccCccCHhHhcC----------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 4445555555554333333333 555555555555555555555555555555555555555555555555
Q ss_pred CCCCCEEEccCCCCcc
Q 037325 569 LRTVKFLVLRNNYLSG 584 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g 584 (598)
+++|++|++++|++.+
T Consensus 152 l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 152 LHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTCCEEECCSCCEEC
T ss_pred CCCCCEEEecCcCCcC
Confidence 5555555555555543
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.6e-17 Score=153.43 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=109.1
Q ss_pred CCCCCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhc
Q 037325 55 SSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFI 134 (598)
Q Consensus 55 ~~W~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~ 134 (598)
..|.+...|.|.+|.|++ +++ +.+|..+. ++|++|+|++|.+++. .|..+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~--------------------------~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~ 60 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS--------------------------KRH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVF 60 (229)
T ss_dssp CCCCTTCEEETTEEECTT--------------------------SCC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTT
T ss_pred ccCCCCCEEeCCEeEccC--------------------------CCc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHh
Confidence 345788889999999974 222 23444333 8899999999999976 68888
Q ss_pred cCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcC
Q 037325 135 GSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 214 (598)
..+++|++|+|++|+++...+..|..+++|++|++++|.+.... ...+..+++|++|++++|.+... +..+..+
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~l 134 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKELFMCCNKLTEL----PRGIERL 134 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCSC----CTTGGGC
T ss_pred hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC--hhHhCcchhhCeEeccCCccccc----CcccccC
Confidence 99999999999999998554556788888888888887654322 23355666666666666666644 3444555
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCC
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS 254 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 254 (598)
++|++|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 135 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccC
Confidence 556666665555555544 344445555555555555543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2e-17 Score=176.63 Aligned_cols=171 Identities=23% Similarity=0.269 Sum_probs=130.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+.... .+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS----SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT----TSTTCT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh----hhccCC
Confidence 4677888888998888874 44 47788899999999988885444 788888888888888765432 477788
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+... ..+..+++|+.|++++|.++++ ..+..+++|+.|+|++|.+++..| +..+++|+.
T Consensus 110 ~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEEecCCCCCCC-----ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 888888888888764 3577788888888888888776 345677788888888888876655 777788888
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCc
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 300 (598)
|++++|.+++. ..+..+++|+.|++++|++
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 88888877743 3477777888888888773
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.2e-17 Score=162.89 Aligned_cols=170 Identities=23% Similarity=0.276 Sum_probs=90.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|.+... ..+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~----~~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL----SSLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG----GGGTTCT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC----hhhccCC
Confidence 3456777788888777763 33 366677788888888777743 33 77777777777777655432 2255556
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.
T Consensus 113 ~L~~L~L~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCcCCCC-----hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 666666666655543 2344445555555555544443 123344444444444444443322 444444444
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEE
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCc
Confidence 4444444432 11 13334444444444443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.2e-17 Score=160.89 Aligned_cols=172 Identities=27% Similarity=0.371 Sum_probs=101.4
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
..+++|++|++++|.++..+. +..+++|++|++++|++++..+ +.++++|+.|++++|.+++ ++ .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 345566666666666655532 4455666666666666665443 6666666666666666653 22 366666666
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCE
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRH 371 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 371 (598)
+|++++|.+ .+ + ..+..+++|+.|++++|.+.+. ..+..++ +|++|++++|.+++..+ +..+++|+.
T Consensus 116 ~L~L~~n~i-~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 116 SLSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EEECTTSCC-CC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EEECCCCcC-CC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC------CCCEEEccCCccccchh--hcCCCccCE
Confidence 666666663 22 2 3455666666666666666554 2344444 56666666666664433 566666666
Q ss_pred EEccCCcCCccchhhccCCCCCCEEeCcCCcCCc
Q 037325 372 LVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405 (598)
Q Consensus 372 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 405 (598)
|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 6666666653 33 25666666666666666554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.4e-16 Score=170.26 Aligned_cols=172 Identities=26% Similarity=0.365 Sum_probs=84.2
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.++.|+.|++++|.+..++ .+..+++|+.|+|++|.+++..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 3444444455555444442 23344555555555555544333 4455555555555555542 22 3445555555
Q ss_pred EECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEE
Q 037325 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 372 (598)
|++++|.+ .. + ..+..+++|+.|++++|.+.+. ..+..++ +|+.|+|++|.+.+..| +..+++|+.|
T Consensus 114 L~Ls~N~l-~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 114 LSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp EECTTSCC-CC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT------TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EEecCCCC-CC-C-ccccCCCccCEEECCCCccCCc--hhhcccC------CCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 55555552 22 1 2344555555555555555443 2333333 45555555555554333 4555555555
Q ss_pred EccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 373 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
++++|++.+. + .+..+++|+.|++++|++++.
T Consensus 181 ~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 5555555532 2 355555555555555555443
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=160.27 Aligned_cols=176 Identities=26% Similarity=0.296 Sum_probs=100.6
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhh-cCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
+.++++++.++.+|... .+.++.|++++|++++..+..+. ++++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555544311 13466666666666655555555 66666666666666665555556666666666666
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc---CCCCCCCEEE
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL---GSLKNLRHLV 373 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~ 373 (598)
+|. +....+..|..+++|++|++++|++.+..+..|..++ +|++|++++|.+++..+..+ ..+++|+.|+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 666 4444444566666666666666666655555555555 56666666666664333333 3466666666
Q ss_pred ccCCcCCccchhhccCCCC--CCEEeCcCCcCC
Q 037325 374 LWQNSFLGSIPPSIGNLTL--LKELYLASNQMN 404 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~ 404 (598)
+++|++.+..+..+..++. ++.|++++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6666666444445555554 356666666554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=3.8e-16 Score=145.38 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCEEEccCCcccccCC-ccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIP-DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
++.|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~ 106 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------S 106 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS------S
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc------C
Confidence 3444444444443322 224445555555555555 3333344555555566666666655555555555555 5
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66666666666666666666666777777777777666666666677777777777766543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.3e-16 Score=145.80 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=62.9
Q ss_pred CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 265 SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+++.|++++|.+++..+..|..+++|++|++++|. +....|..|..+++|++|++++|+++...+..|..++ +
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~ 105 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------S 105 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------T
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------C
Confidence 34444444444443333334444444444444444 3333344444444444444444444443333344444 4
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555555444445555555555555555555444444555555555555555543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=3.1e-16 Score=157.91 Aligned_cols=177 Identities=25% Similarity=0.207 Sum_probs=122.6
Q ss_pred ccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCcccc-CCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 242 LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA-SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 242 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
-+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|. +....+..|..+++|++|++
T Consensus 20 ~~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 3578888887764 44433 24577888888888766666666 77888888888887 55555567777888888888
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhc---cCCCCCCEEe
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI---GNLTLLKELY 397 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l---~~l~~L~~L~ 397 (598)
++|++....+..|..++ +|++|++++|.+++..+..+..+++|+.|++++|++++..+..+ ..+++|+.|+
T Consensus 96 s~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 88887776666666666 78888888888877667777777888888888887775433334 4577777888
Q ss_pred CcCCcCCcccCCCchhhhcCCCC--CCEEEccCccCc
Q 037325 398 LASNQMNGQKISDSYQHLKNQTE--LRTLVLNKARIS 432 (598)
Q Consensus 398 l~~n~l~~~~~~~~~~~l~~~~~--L~~L~l~~n~l~ 432 (598)
+++|+++... + ..+..++. ++.|++++|.+.
T Consensus 170 L~~N~l~~l~-~---~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLP-L---TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCC-H---HHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccC-H---HHhhhccHhhcceEEecCCCcc
Confidence 8877776543 2 23444444 366777777765
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.4e-16 Score=144.39 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=119.7
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcC
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSG 297 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 297 (598)
+.++.+++.++.+|... .+++++|++++|++++..+..+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666666665422 15788888888888876666788888888888888888877777888888888888888
Q ss_pred CCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCC
Q 037325 298 NSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN 377 (598)
Q Consensus 298 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 377 (598)
|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH------NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC------CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88 4555555677888888888888888888777777777 7888999999888777777888888999999988
Q ss_pred cCCc
Q 037325 378 SFLG 381 (598)
Q Consensus 378 ~l~~ 381 (598)
++..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8764
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.4e-19 Score=190.42 Aligned_cols=89 Identities=27% Similarity=0.290 Sum_probs=76.4
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcccc-chh
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGST-PES 565 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~ 565 (598)
+++|+.|++++|+++ .+|..++. +++|+.|+|++|.+++ +| .++++++|++|+|++|++++.. |..
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~----------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAA----------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGG----------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred cccCcEeecCccccc-ccchhhhc----------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 467888888888888 78888877 8899999999999985 77 7899999999999999999776 889
Q ss_pred ccCCCCCCEEEccCCCCcccCCc
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
++.+++|+.|++++|++++..|.
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSC
T ss_pred HhcCCCCCEEEecCCcCCCCccH
Confidence 99999999999999999876553
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.7e-16 Score=143.86 Aligned_cols=153 Identities=17% Similarity=0.272 Sum_probs=73.3
Q ss_pred cCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.+ . .+..+..+++|++|++++|.+.+..+..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---- 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---- 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence 3444555555555444 233 344445555555555531 1 122344455555555555555544444444444
Q ss_pred CCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCC
Q 037325 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTEL 421 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L 421 (598)
+|++|++++|.+++..+..+..+++|++|++++|+..+.++ .+..+++|++|++++|.+++.. .+..+++|
T Consensus 113 --~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L 183 (197)
T 4ezg_A 113 --SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKL 183 (197)
T ss_dssp --TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSC
T ss_pred --CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH------HhccCCCC
Confidence 45555555555554445555555555555555555222333 3555555555555555554321 24444555
Q ss_pred CEEEccCccCc
Q 037325 422 RTLVLNKARIS 432 (598)
Q Consensus 422 ~~L~l~~n~l~ 432 (598)
+.|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 55555555543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.6e-19 Score=189.06 Aligned_cols=188 Identities=26% Similarity=0.211 Sum_probs=99.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC-------------CCcccchhccCCCCCCEEE-ccCCCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF-------------FSGTIPQTLGNLSNLLYLD-LNNFLDQ 175 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~~~ 175 (598)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..++.+++|++|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH--
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc--
Confidence 45677777777777776 467777777777777776553 3344455555555555555 33211
Q ss_pred CCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC
Q 037325 176 SNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 176 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
++.|+.+.+++|.+.... ...|+.|++++|.+++++. +..+++|+.|++++|.++ .
T Consensus 422 -----------~~~L~~l~l~~n~i~~l~---------~~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 422 -----------LDDLRSKFLLENSVLKME---------YADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH---------HTTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCC-C
T ss_pred -----------cchhhhhhhhcccccccC---------ccCceEEEecCCCCCCCcC---ccccccCcEeecCccccc-c
Confidence 111222222222222110 1235566666666655432 445556666666666655 4
Q ss_pred cchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcccc-chhhcCCCCCCEEecccccCCcc
Q 037325 256 TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQL-SRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 256 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
+|..+..+++|+.|++++|.+++ +| .++.+++|+.|++++|. +.+.. |..++.+++|+.|++++|.+++.
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 45555556666666666665553 34 45555555555555555 33333 55555555555555555555443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=7.4e-16 Score=140.97 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=62.4
Q ss_pred hhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCC
Q 037325 260 LFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339 (598)
Q Consensus 260 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 339 (598)
+..+++|++|++++|.+. .+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-- 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-- 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS--
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC--
Confidence 334444444444444332 11234444444444444444 3333334444445555555555555444444444444
Q ss_pred CCCCCccEEEccCcc-ccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 340 TNSILLEKLELRFNQ-FTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 340 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
+|++|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 137 ----~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 137 ----KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ----CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 45555555554 33 233 45555666666666666553 22 4556666666666666554
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.8e-16 Score=140.43 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=58.4
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|++|++++|++++..|..+.. +++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEG----------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTT----------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CCCCCEEECCCCCCCCcCHhHcCC----------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 456666666666666555555554 6666666666666666556666666666666666666666666666
Q ss_pred cCCCCCCEEEccCCCCcccC
Q 037325 567 GSLRTVKFLVLRNNYLSGKL 586 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g~~ 586 (598)
..+++|++|++++|++.+..
T Consensus 123 ~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTCTTCCEEECTTCCBCCSG
T ss_pred hcCCCCCEEEeCCCCccCcC
Confidence 66666666666666666543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.1e-16 Score=151.40 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=80.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGL 187 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 187 (598)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|++++ +|. +..+++|++|++++|.+..... +..
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~----~~~- 105 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG----IPS- 105 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTT----CCC-
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCc----ccc-
Confidence 35566667777777776663 34 45666677777777776663 333 6666666666666665543221 122
Q ss_pred CCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCC
Q 037325 188 SSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLL 267 (598)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 267 (598)
++|++|++++|.+.+. ..+..+++|++|++++|.+++.+ .+..+++|++|++++|++++. ..+..+++|+
T Consensus 106 ~~L~~L~L~~N~l~~~-----~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp SSCCEEECCSSCCSBS-----GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred CcccEEEccCCccCCC-----hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 5555555555555543 13444555555555555554442 233444555555555554443 3344444455
Q ss_pred EEEccCCccc
Q 037325 268 CLDLGSNDLQ 277 (598)
Q Consensus 268 ~L~l~~n~l~ 277 (598)
.|++++|.+.
T Consensus 176 ~L~l~~N~~~ 185 (263)
T 1xeu_A 176 WIDLTGQKCV 185 (263)
T ss_dssp EEEEEEEEEE
T ss_pred EEeCCCCccc
Confidence 5555544444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.6e-16 Score=150.88 Aligned_cols=170 Identities=23% Similarity=0.291 Sum_probs=110.1
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 444 (598)
.+.++..++++++.+++. + .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ + ..++
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l--~----~l~~l~~L~~L~L~~N~i~~~~~--l-~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL--A----GMQFFTNLKELHLSHNQISDLSP--L-KDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC--T----TGGGCTTCCEEECCSSCCCCCGG--G-TTCS
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc--h----HHhhCCCCCEEECCCCccCCChh--h-ccCC
Confidence 355677788888888744 3 477889999999999988753 2 36778999999999999987665 3 3478
Q ss_pred CCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCC
Q 037325 445 TLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQL 524 (598)
Q Consensus 445 ~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L 524 (598)
+|++|++++|++++. |.... ++|+.|++++|++++ ++ .+.. +++|
T Consensus 86 ~L~~L~L~~N~l~~l-~~~~~----------------------~~L~~L~L~~N~l~~-~~-~l~~----------l~~L 130 (263)
T 1xeu_A 86 KLEELSVNRNRLKNL-NGIPS----------------------ACLSRLFLDNNELRD-TD-SLIH----------LKNL 130 (263)
T ss_dssp SCCEEECCSSCCSCC-TTCCC----------------------SSCCEEECCSSCCSB-SG-GGTT----------CTTC
T ss_pred CCCEEECCCCccCCc-Ccccc----------------------CcccEEEccCCccCC-Ch-hhcC----------cccc
Confidence 899999999988753 22111 345555555555553 22 2333 5556
Q ss_pred CeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 525 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+.|++++|++++ +| .++.+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 666666666653 23 355556666666666666543 445555666666666665553
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=3e-15 Score=140.28 Aligned_cols=135 Identities=30% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|++++..+..+..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~------ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV------ 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch------
Confidence 344444454444444444444455555555555555 2333333445555555555555555555444455555
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.
T Consensus 113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 5666666666666 4555666667777777777777655555566677777777777766644
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3e-17 Score=179.82 Aligned_cols=260 Identities=16% Similarity=0.114 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHhcCC-CCCCCCCCCC--CCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCcc
Q 037325 32 CQEAERKALLQFKQSLR-DPSGQLSSWV--GEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPS 108 (598)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~~~~~~~W~--~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (598)
....++++++++..+.. .....-..|. ....+.|.++.++. .+++.++|.+ +++... +..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~--------------n~~~~~-~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA--------------NGKDEA-NQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC--------------CCCCcc-hhh
Confidence 44567789998886652 1222334573 34567898888864 6899999976 455442 333
Q ss_pred ccCCCCCCEE-----eCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 109 LLQLKDLEYL-----DLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 109 l~~l~~L~~L-----~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
+.....|+.+ +++.|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.+... ...
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~l---p~~ 265 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTEL---PAE 265 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCC---CGG
T ss_pred HhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCccc---Chh
Confidence 3222233332 22333333 25677888999999999999998 7888888999999999999887622 244
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
+.++++|++|+|++|.++.. +..+..+++|++|++++|.++.++. .+..+++|++|+|++|.+++.+|..+..+
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~l----p~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSL----PAELGSCFQLKYFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSC----CSSGGGGTTCSEEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred hhCCCCCCEEeCcCCcCCcc----ChhhcCCCCCCEEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 78899999999999999854 5678899999999999999987765 37889999999999999999888887654
Q ss_pred C-CCCEEEccCCcccccCCccccCCCCccEEECcCCCc-------CccccchhhcCCCCCCEEecccccCC
Q 037325 264 T-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF-------LGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 264 ~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-------~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
. ....+++++|.+++.+|.. |+.|+++.|.. +.+..+..+..+..+....++.|-+.
T Consensus 340 ~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred chhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3 2234778899998877753 45556665510 11222223344445555556666543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=5.3e-15 Score=131.50 Aligned_cols=135 Identities=18% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCEEEccCCcCc-ccCCCCcccC-CCCEEEcccCcCccc-CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCcccc
Q 037325 445 TLDELDVAYNELR-GRVPNSLGFN-FPAKVDLSFNNFEGR-LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521 (598)
Q Consensus 445 ~L~~L~ls~n~~~-~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l 521 (598)
+|++|++++|.++ +.+|..+... .|+.|++++|.+++. ....+++|++|++++|++++.+|..+.. +
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------l 94 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEK----------L 94 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHH----------C
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhh----------C
Confidence 3444444444443 3333333222 444444444444432 1123678999999999999778877766 8
Q ss_pred CCCCeEeCcCCccccc-cchhccCCCCCCEEECCCCcCccccc---hhccCCCCCCEEEccCCCCcccCCcCc
Q 037325 522 KQLITLVISNNNLSGE-IPLLFSNISFLYILDMSNNSLSGSTP---ESIGSLRTVKFLVLRNNYLSGKLPLSL 590 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~~n~l~g~~P~~~ 590 (598)
++|+.|++++|.+++. .+..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|..-
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 9999999999999954 23789999999999999999996555 48899999999999999998 677653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=6.1e-16 Score=169.52 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=43.9
Q ss_pred CCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCE
Q 037325 238 NFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRT 317 (598)
Q Consensus 238 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 317 (598)
.+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.+ ..+|..|+.+++|++
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQF 320 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCC
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccE
Confidence 3444444444444444 34444444455555555555544 3444444445555555555542 234444445555555
Q ss_pred EecccccCCcccchhh
Q 037325 318 MILSRNNISSEVSDFL 333 (598)
Q Consensus 318 L~l~~n~l~~~~~~~~ 333 (598)
|+|++|.+++..|..+
T Consensus 321 L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EECTTSCCCSHHHHHH
T ss_pred EeCCCCccCCCChHHH
Confidence 5555555554444443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=8.9e-16 Score=152.60 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=167.0
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccC-CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC----
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGS-LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG---- 186 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~---- 186 (598)
+.+++.|.++++ +....+ ..+.. +++|++|||++|++. .....-+.++.++.+.+..+ ......|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~-----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMAN-----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTT-----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeE-EecCcccccccccccccccc-----ccCHHHhcccccc
Confidence 556777777653 111111 12223 677888888877766 11111112222333443333 122234566
Q ss_pred ----CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCC----CCCCcch
Q 037325 187 ----LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNND----FNSTTPH 258 (598)
Q Consensus 187 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~ 258 (598)
+++|+.+++.+ .+..+. ...|.+|++|+++++.+|.+..++. ..+..+.++..+....+. .......
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~---~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIE---DAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEEC---TTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccCCCcEEECCc-cccchh---HHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccccc
Confidence 77777777777 666554 4677788888888888887777666 556666667666665421 1112223
Q ss_pred hhhcCCCCC-EEEccCCcccccCCccc----cCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhh
Q 037325 259 WLFNITSLL-CLDLGSNDLQGDIPDGF----ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333 (598)
Q Consensus 259 ~l~~l~~L~-~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 333 (598)
.+.++..|+ .+.+.... .++..+ ....+++.+.+.++- ...........+++|+.+++.+|+++......|
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 344555665 44443321 122111 124556666666553 222222222346788888888877777777777
Q ss_pred hCCCCCCCCCCccEEEccCccccccCccccCCCCCCC-EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCch
Q 037325 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR-HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 334 ~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
..+. +|+++++.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++... +
T Consensus 247 ~~~~------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-~--- 314 (329)
T 3sb4_A 247 AQKK------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG-D--- 314 (329)
T ss_dssp TTCT------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC-T---
T ss_pred hCCC------CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc-h---
Confidence 7766 7888888776 6656666778888888 888877 566555667888888888888877776554 3
Q ss_pred hhhcCCCCCCEEE
Q 037325 413 QHLKNQTELRTLV 425 (598)
Q Consensus 413 ~~l~~~~~L~~L~ 425 (598)
..+.++++|+.++
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 2466777777765
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.2e-15 Score=149.68 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=153.6
Q ss_pred CCCCCEEECcCCCCCcccchhccC-CCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhc--
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGN-LSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK-- 213 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-- 213 (598)
+++++.|.++++ +...-...+.. +++|++|||++|.+........ .++.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~------~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP------AYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC------TTTTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC------HHHhcccc
Confidence 567888888764 22111223333 7778888888776541111111 1112344444444332 234555
Q ss_pred ------CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcc----cccCCcc
Q 037325 214 ------LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL----QGDIPDG 283 (598)
Q Consensus 214 ------l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~ 283 (598)
+++|+++++.+ .++.++. ..+..|++|+.+++..|.+....+..|..+.++..+....+.. .......
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccccccCCCcEEECCc-cccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 77777777777 6666655 5666777777777777776655556666666555555444211 1111222
Q ss_pred ccCCCCcc-EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhh-hCCCCCCCCCCccEEEccCccccccCcc
Q 037325 284 FASLNSLQ-ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL-DGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 284 l~~l~~L~-~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
|..+..|+ .+.+.........+...-....+++.+.+.++- .......+ ..++ +|+++++++|+++...+.
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~------~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMP------NLVSLDISKTNATTIPDF 244 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCT------TCCEEECTTBCCCEECTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcC------CCeEEECCCCCcceecHh
Confidence 33444454 343333221111111111123345555554431 11111111 1133 677777777777765556
Q ss_pred ccCCCCCCCEEEccCCcCCccchhhccCCCCCC-EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHH
Q 037325 362 SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK-ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440 (598)
Q Consensus 362 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (598)
.|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++... + ..+.+|++|+.+++++|.+....+..|.
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~---~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-F---GAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-T---TTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-h---hhhhCCccCCEEEeCCCccCccchhhhc
Confidence 6777777777777776 5544555677777777 777766 444332 2 2466677777777777777655555554
Q ss_pred hcCCCCCEEE
Q 037325 441 QLSLTLDELD 450 (598)
Q Consensus 441 ~~~~~L~~L~ 450 (598)
. +++|+.++
T Consensus 319 ~-~~~L~~ly 327 (329)
T 3sb4_A 319 N-GVPSKLIY 327 (329)
T ss_dssp T-TCCCCEEE
T ss_pred C-Ccchhhhc
Confidence 4 56666654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2e-14 Score=130.68 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=98.2
Q ss_pred CEEEcccCcCcccCCCC-CcCCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCC
Q 037325 470 AKVDLSFNNFEGRLLLW-SFNVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISF 547 (598)
Q Consensus 470 ~~l~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 547 (598)
+.+++++|++. .+|.. ..++++|++++|++++..+.. +.. +++|++|+|++|.+++..|..|+++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGR----------LPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGG----------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCcccccc----------CCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 44555555553 33332 347899999999998655543 555 899999999999999888999999999
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
|++|+|++|++++..|..|.++++|++|++++|++++.+|..+..+++|+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 99999999999988888899999999999999999999999999888775
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.4e-14 Score=126.03 Aligned_cols=125 Identities=17% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCEEEccCCcCc-ccCCCCcccC-CCCEEEcccCcCccc-CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCcccc
Q 037325 445 TLDELDVAYNELR-GRVPNSLGFN-FPAKVDLSFNNFEGR-LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521 (598)
Q Consensus 445 ~L~~L~ls~n~~~-~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l 521 (598)
++++|++++|.++ +.+|..+... .++.|++++|.+++. ....+++|++|++++|++++.+|..+.. +
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----------l 87 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK----------C 87 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHH----------C
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhh----------C
Confidence 3444444444444 3333332222 334444444433332 1112567788888888887667766665 6
Q ss_pred CCCCeEeCcCCccccc-cchhccCCCCCCEEECCCCcCccccc---hhccCCCCCCEEEccC
Q 037325 522 KQLITLVISNNNLSGE-IPLLFSNISFLYILDMSNNSLSGSTP---ESIGSLRTVKFLVLRN 579 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~~ 579 (598)
++|++|++++|.+++. .|..++++++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7888888888888753 34777888888888888888876554 4677788888887763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3.1e-14 Score=126.55 Aligned_cols=132 Identities=25% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCccEEEccCCCCC-CCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE
Q 037325 240 ASLQVLDLSNNDFN-STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318 (598)
Q Consensus 240 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 318 (598)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|. +.+.+|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~---- 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPN---- 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTT----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc-CchHHHHHHhhCCC----
Confidence 34555555555544 33444444445555555555554432 334444444444444444 22223333333444
Q ss_pred ecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-ccccCCCCCCCEEEccCCcCCccch---hhccCCCCCC
Q 037325 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL-PISLGSLKNLRHLVLWQNSFLGSIP---PSIGNLTLLK 394 (598)
Q Consensus 319 ~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~---~~l~~l~~L~ 394 (598)
|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 97 --------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 97 --------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp --------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred --------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 444444444444321 1344445555555555555543322 2445555555
Q ss_pred EEeCcCCcCC
Q 037325 395 ELYLASNQMN 404 (598)
Q Consensus 395 ~L~l~~n~l~ 404 (598)
+|++++|.+.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 5555555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=6.8e-14 Score=125.46 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
.+.+++++++++..... ..++|++|++++|++++..+..+. .+++|++|++++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~----~~~~l~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG----IPSSATRLELESNKLQSLPHGVFD--------------------KLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTEEECCSSCCSSCCTT----CCTTCSEEECCSSCCCCCCTTTTT--------------------TCTTCSEEECCSSCC
T ss_pred CCEEEecCCCCccCCCC----CCCCCcEEEeCCCcccEeCHHHhc--------------------CcccccEEECCCCcc
Confidence 34566666655533211 124555666665555543332222 245777778888877
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
++..+..+.. +++|+.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 65 ~~~~~~~~~~----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 65 QSLPDGVFDK----------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCTTTTTT----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred eEeChhHccC----------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 7444433444 778888888888888666666778888888888888888555555677888888888888
Q ss_pred CCcccCC
Q 037325 581 YLSGKLP 587 (598)
Q Consensus 581 ~l~g~~P 587 (598)
++.+..|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8876554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=8.1e-14 Score=126.59 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=68.7
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|+.|++++|++++..+..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..|
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~----------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSN----------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred ccCCCEEECCCCcCCEeCHhHccC----------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 467788888888887655555655 7888888888888887777778888888888888888886555567
Q ss_pred cCCCCCCEEEccCCCCcc
Q 037325 567 GSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g 584 (598)
..+++|+.|++++|++..
T Consensus 123 ~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred hcCccccEEEeCCCCeec
Confidence 888888888888888753
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.1e-14 Score=124.83 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
.++|++|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~----------------------- 70 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLE----------------------- 70 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEE-----------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEE-----------------------
Confidence 356666666666665212565566666666666666666533 3344444444444
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc---hhhhcCCCCCE
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP---HWLFNITSLLC 268 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~ 268 (598)
+++|.+.+.. +..+..+++|++|++++|.+++.+....+..+++|++|++++|.+++..+ ..+..+++|+.
T Consensus 71 ---Ls~n~i~~~~---~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 71 ---LSDNRVSGGL---EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp ---CCSSCCCSCT---HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred ---CCCCcccchH---HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 4445544432 44455555566666655555553211234445555555555555554433 34555555555
Q ss_pred EEcc
Q 037325 269 LDLG 272 (598)
Q Consensus 269 L~l~ 272 (598)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 5543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=124.89 Aligned_cols=115 Identities=28% Similarity=0.360 Sum_probs=95.6
Q ss_pred EEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 471 KVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 471 ~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
.+++++|++.. +|. ..+++++|++++|+++ .+|..+.. +++|+.|+|++|.+++..+..|.++++|+
T Consensus 14 ~l~~~~~~l~~-ip~~~~~~l~~L~L~~n~i~-~ip~~~~~----------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIPRDVTELYLDGNQFT-LVPKELSN----------YKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp EEECTTSCCSS-CCSCCCTTCCEEECCSSCCC-SCCGGGGG----------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEcCCCCCCc-CCCCCCCCCCEEECCCCcCc-hhHHHhhc----------ccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 44444544442 232 2457999999999998 78877776 89999999999999988888999999999
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|+
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 999999999988888999999999999999999965555688887765
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.2e-13 Score=120.96 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=79.6
Q ss_pred CEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 470 AKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 470 ~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
+.+++++|+++.......+++++|++++|++++..|..+.. +++|+.|+|++|++++..+..|.++++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~----------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR----------LTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT----------CTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcC----------cccCCEEECCCCCcCccChhhccCCCCCC
Confidence 34444554444322222357888888888888766766666 88899999999999866666778889999
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCccc
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~ 585 (598)
+|+|++|++++..|..|.++++|++|++++|++.+.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999876666788888999999999988754
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.6e-13 Score=122.81 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=88.8
Q ss_pred cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEc
Q 037325 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYL 495 (598)
Q Consensus 416 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~l 495 (598)
..+++|+.|++++|+++.. +. +....++|++|++++|.+++. ..+ ..+++|++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l--------------------~~l~~L~~L~L 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGF--------------------PLLRRLKTLLV 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCC--------------------CCCSSCCEEEC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccc--------------------ccCCCCCEEEC
Confidence 3445555566665555532 22 223234667777777666542 111 12457888888
Q ss_pred cCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccch--hccCCCCCCEEECCCCcCccccchh----ccCC
Q 037325 496 RDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL--LFSNISFLYILDMSNNSLSGSTPES----IGSL 569 (598)
Q Consensus 496 s~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~----l~~l 569 (598)
++|++++..|..+.. +++|+.|++++|.++ .+|. .+.++++|++|++++|.++ .+|.. +..+
T Consensus 72 s~N~l~~~~~~~~~~----------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l 139 (176)
T 1a9n_A 72 NNNRICRIGEGLDQA----------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV 139 (176)
T ss_dssp CSSCCCEECSCHHHH----------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred CCCcccccCcchhhc----------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence 888887443333355 788899999999886 6666 7888888999999999887 56664 7888
Q ss_pred CCCCEEEccCCCCc
Q 037325 570 RTVKFLVLRNNYLS 583 (598)
Q Consensus 570 ~~L~~L~l~~n~l~ 583 (598)
++|+.||+++|...
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 88999999888754
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1.1e-12 Score=117.44 Aligned_cols=109 Identities=27% Similarity=0.304 Sum_probs=43.0
Q ss_pred CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC
Q 037325 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN 368 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 368 (598)
+|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------ccCEEECCCCCccccCHHHhhCCcc
Confidence 34444444444 2222223333444444444444444333333333333 3444444444444333333344444
Q ss_pred CCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 369 LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 369 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444444444444322222333444444444444433
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=6.4e-12 Score=127.45 Aligned_cols=201 Identities=12% Similarity=0.125 Sum_probs=91.6
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|.+|++|+.+++.+|.++.++. ..+. +.+|+.+.+..+ ++......|.++++|+.+.+..+ ++.....+|.+ .+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~-~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA-STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT-TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HhhCcccCCeeecCCCcceEech-hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 34444444444444444444333 2222 244444444422 33333334444555555555442 22222233333 44
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCC-----cccchhhhCCCCCCCCCCccEEEccCccccccCccccC
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS-----SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 364 (598)
|+.+.+.++ +.......|..|++|+.+.+.++.+. ......|..+. +|+.+++.+ .++......|.
T Consensus 250 L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~------~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 250 ITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP------KLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp CSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT------TCCEECCCT-TCCEECTTTTT
T ss_pred ccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc------cCCeEEeCC-ceEEEhhhhhc
Confidence 555555332 22222344555555555555544333 22333444444 566666653 34444444566
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC-CCCCEEEccCcc
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ-TELRTLVLNKAR 430 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~-~~L~~L~l~~n~ 430 (598)
++++|+.+.+..+ ++..-..+|.++ +|+.+++.+|.+.... .. .+..+ ..++.+.+..+.
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~-~~---~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF-EK---VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC-CS---SCCCSCTTCCEEEECGGG
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc-cc---cccCCCCCccEEEeCHHH
Confidence 6666666666443 443334456666 6666666666544322 22 12333 255666665544
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.8e-13 Score=118.21 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=75.4
Q ss_pred EEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 471 KVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 471 ~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
.+++++|++. .+|. ..++|++|++++|++++..|..+.. +++|+.|+|++|+|++..+..|.++++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDH----------LVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcC----------CcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 4444444443 2222 2357888888888888766766666 78888888888888865555678888888
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+|+|++|++++..+..|..+++|++|++++|++..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88888888886555568888888888888888873
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=6.3e-15 Score=134.85 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=100.6
Q ss_pred ccCCCCCCEEeCcCCcCCcccCCC---chhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCC
Q 037325 387 IGNLTLLKELYLASNQMNGQKISD---SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS 463 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~ 463 (598)
+.....++.++++.+.+++.. +. .-..+..+++|+.|++++|++++ +| .+.. +++|++|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~-~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCC-TTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEecccc-CcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccch
Confidence 444556666666666666553 21 00134445555555555555554 23 3332 445555555555544 22221
Q ss_pred cccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc-hhc
Q 037325 464 LGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP-LLF 542 (598)
Q Consensus 464 ~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~ 542 (598)
+. .+++|++|++++|++++ +| .+.. +++|+.|++++|.+++..+ ..+
T Consensus 89 ~~--------------------~~~~L~~L~L~~N~l~~-l~-~~~~----------l~~L~~L~l~~N~i~~~~~~~~l 136 (198)
T 1ds9_A 89 DA--------------------VADTLEELWISYNQIAS-LS-GIEK----------LVNLRVLYMSNNKITNWGEIDKL 136 (198)
T ss_dssp HH--------------------HHHHCSEEEEEEEECCC-HH-HHHH----------HHHSSEEEESEEECCCHHHHHHH
T ss_pred hh--------------------cCCcCCEEECcCCcCCc-CC-cccc----------CCCCCEEECCCCcCCchhHHHHH
Confidence 11 13678888888888875 44 5655 7899999999999984322 478
Q ss_pred cCCCCCCEEECCCCcCccccchh----------ccCCCCCCEEEccCCCCc
Q 037325 543 SNISFLYILDMSNNSLSGSTPES----------IGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 543 ~~l~~L~~L~ls~N~l~~~~p~~----------l~~l~~L~~L~l~~n~l~ 583 (598)
.++++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 89999999999999998776653 78889999887 66665
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=9.2e-12 Score=126.29 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=104.6
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
|.++ +|+.+.+..+ +..+. ...|.++ +|+.+.+.+ .++.+.. ..+..|++|+.+++..|+++......|. +
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~---~~aF~~~-~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIG---DMAFFNS-TVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEEC---TTTTTTC-CCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred cccC-CccEEEeCCC-ccEEC---HHhcCCC-CceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 4443 4555555443 33222 2334342 455555543 3444433 3445555555555555555433333333 3
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
.+|+.+.+.++ +......+|.++++|+.+++..+ +.......|.. .
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--------------------------l~~I~~~aF~~-~------ 248 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--------------------------VSTIGQEAFRE-S------ 248 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--------------------------CCEECTTTTTT-C------
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--------------------------ccCcccccccc-C------
Confidence 45555555432 33233334445555555555443 22222233332 1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCC-----ccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFL-----GSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ 418 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 418 (598)
+|+.+.+. +.++......|.++++|+.+++.++.+. ...+..|.++++|+.+++.++ ++... . ..+.+|
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~-~---~aF~~c 322 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILG-Q---GLLGGN 322 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEEC-T---TTTTTC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEh-h---hhhcCC
Confidence 34444442 2233333344455555555555444332 122334455555555555532 32221 1 234455
Q ss_pred CCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC--CCCEEEcccCc
Q 037325 419 TELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN--FPAKVDLSFNN 478 (598)
Q Consensus 419 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~--~L~~l~ls~n~ 478 (598)
++|+.+.+..+ ++......|.. + +|+.+++++|......+..+... .++.+.+..+.
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~-~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNN-T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSS-S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCccEEEECcc-ccEEcHHhCCC-C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555555333 33222333332 4 55555555555443333333322 34555554443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=3.5e-11 Score=122.54 Aligned_cols=327 Identities=11% Similarity=0.066 Sum_probs=166.0
Q ss_pred hHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCC
Q 037325 208 LEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
...|.+|++|+++.+.. .++.+.. .++.++++|+.+++..+ ++......+.++++|+.+.+..+ +.......|..+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGE-FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcch-hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 35667777777777753 3555544 55666677777766543 33333344555666665544432 221222333333
Q ss_pred CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCC
Q 037325 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLK 367 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 367 (598)
..++........ ......|..+++|+.+.+.++ +... ....+.++.
T Consensus 140 ~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I------------------------------~~~~F~~c~ 185 (394)
T 4fs7_A 140 DFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METL------------------------------HNGLFSGCG 185 (394)
T ss_dssp CCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEE------------------------------CTTTTTTCT
T ss_pred cccccccCcccc---ccchhhhcccCCCcEEecCCc-ccee------------------------------ccccccCCC
Confidence 322222211111 111233445555555555332 1222 222344444
Q ss_pred CCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCC
Q 037325 368 NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLD 447 (598)
Q Consensus 368 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 447 (598)
+|+.+.+..+ +.......+.++..|+.+.+..+...- . ........|+.+.+.... +......+ ..+..++
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i---~---~~~~~~~~l~~i~ip~~~-~~i~~~~f-~~~~~l~ 256 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL---G---DFALSKTGVKNIIIPDSF-TELGKSVF-YGCTDLE 256 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE---C---TTTTTTCCCCEEEECTTC-CEECSSTT-TTCSSCC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCceEe---e---hhhcccCCCceEEECCCc-eecccccc-cccccce
Confidence 4444444333 221222334444444444444332110 0 011223344444443221 11111111 2244555
Q ss_pred EEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCe
Q 037325 448 ELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLIT 526 (598)
Q Consensus 448 ~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~ 526 (598)
.+.+..+... .....+... .++.+....+.+.......+.+|+.+.+.++ ++..-...| ..+++|+.
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF----------~~c~~L~~ 324 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAF----------ESCTSLVS 324 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTT----------TTCTTCCE
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhh----------cCCCCCCE
Confidence 5555544322 112222222 4555555554444444455678888888655 432222233 34889999
Q ss_pred EeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 527 LVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 527 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
++|.++ ++..-...|.++++|+.+++..| ++..-...|.++.+|+.+++..+ +. .+...|.+|++|+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 999754 66445678899999999999877 66555678999999999999765 33 4566788888876
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=2.2e-12 Score=115.33 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=76.3
Q ss_pred cCCCCCcEEEcCCCCCCCCcccchHhhhcC-CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 185 SGLSSLVYFNLGGADLSKAGAYWLEVFNKL-HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 185 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
.++++|++|++++|.+.... . +..+ ++|++|++++|.++++ ..+..+++|++|++++|.+++..+..+..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~----~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE----N-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC----C-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCcCCceEEEeeCCCCchhH----H-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34455555555555555431 1 2222 3666666666666654 234556677777777777765444445667
Q ss_pred CCCCEEEccCCcccccCCc--cccCCCCccEEECcCCCcCccccch----hhcCCCCCCEEecccccCC
Q 037325 264 TSLLCLDLGSNDLQGDIPD--GFASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----~l~~l~~L~~L~l~~n~l~ 326 (598)
++|++|++++|.+. .+|. .+..+++|+.|++++|++ . .+|. .+..+++|+.|++++|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i-~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV-T-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG-G-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC-C-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777777664 3443 566666777777777763 2 3333 3566666666666666443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.8e-14 Score=131.72 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=76.2
Q ss_pred hhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (598)
..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+ . .+|..+..+++|++|++++|++++. + .+..++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 366777777777777777764 45 566667777777777763 2 4555555556666666666666653 2 344444
Q ss_pred CCCCCCCccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCccchh----------hccCCCCCCEEe
Q 037325 338 ECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGSIPP----------SIGNLTLLKELY 397 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~----------~l~~l~~L~~L~ 397 (598)
+|++|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+
T Consensus 116 ------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 ------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 56666666666654222 3455666666666666666544332 144555555554
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=4.5e-11 Score=121.72 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=39.7
Q ss_pred ccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEE
Q 037325 520 NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFL 575 (598)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L 575 (598)
.+++|+.+++..+ ++..-...|.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 3788999999876 66455678889999999999765 33 345678888877765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=1.2e-11 Score=109.79 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=85.4
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
+.+.+++++|.++ .+|..+ .+.|+.|+|++|.|++..|..|.++++|++|+|++|++++..|..|.+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEEeCCCCcC-ccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 5689999999998 578665 468999999999999888999999999999999999999777777899
Q ss_pred CCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+++|++|++++|++++..|..+..+++|+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 99999999999999976666788888775
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.5e-13 Score=134.61 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=31.5
Q ss_pred CCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHH
Q 037325 365 SLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 439 (598)
.+++|++|++++|.+.+. ++..+...++|++|++++|.+++.........+...++|++|++++|.+++.....+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 344444444444444322 123334444455555555544432211111223344445555555555544443333
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.2e-13 Score=134.82 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh
Q 037325 366 LKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ 441 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 441 (598)
.++|+.|++++|.+++. ++..+...++|++|++++|.+++..+......+...++|+.|++++|.+++.....+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34555555555555432 23333455566666666666554321111233445556666666666665443332221
Q ss_pred ---cCCCCCEEEccCCcCcc
Q 037325 442 ---LSLTLDELDVAYNELRG 458 (598)
Q Consensus 442 ---~~~~L~~L~ls~n~~~~ 458 (598)
..+.|++|++++|.++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 13556666666666554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.7e-11 Score=107.82 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
.-+.+++++|+++ .+|..+ .+.|+.|+|++|.+++..|..|+++++|++|+|++|++++..+..|.+
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCcEEEeCCCCCC-ccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 3478999999997 788765 368999999999999888999999999999999999999766666799
Q ss_pred CCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+++|++|++++|++++..|..+..+++|+
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cchhhEEECCCCccceeCHHHhccccCCC
Confidence 99999999999999965555588888775
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.5e-10 Score=114.11 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=79.8
Q ss_pred CcceecCccccCCCCCCEEeCCC-CCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSM-NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ +|. +..+++|++|+|++ |.+++. .+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+....
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4554 777 99999999999996 999965 5678999999999999999999888888999999999999998875433
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCC
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKA 203 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~ 203 (598)
. ..+..++ |+.|++.+|.+...
T Consensus 97 ~--~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 97 W--KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp S--TTTCSCC-CCEEECCSSCCCCC
T ss_pred H--HHcccCC-ceEEEeeCCCccCC
Confidence 2 2344444 88888888887654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=3.2e-10 Score=113.37 Aligned_cols=85 Identities=28% Similarity=0.312 Sum_probs=57.8
Q ss_pred cCCcEEEccC-CcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 488 FNVTKLYLRD-NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 488 ~~L~~L~ls~-n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
++|+.|+|++ |+|++..|..|.. +++|+.|+|++|+|++..|..|+++++|+.|+|++|+|++..|..+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRG----------LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCS----------CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred CCeeEEEccCCCCCCCcChhHhcc----------ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3567777774 7776555555555 6777777777777777667777777777777777777775444445
Q ss_pred cCCCCCCEEEccCCCCc
Q 037325 567 GSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~ 583 (598)
..++ |+.|++.+|++.
T Consensus 101 ~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCC-CCEEECCSSCCC
T ss_pred ccCC-ceEEEeeCCCcc
Confidence 5444 777777777765
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=1.2e-08 Score=103.80 Aligned_cols=318 Identities=11% Similarity=0.066 Sum_probs=187.5
Q ss_pred CccccCCC-CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC---CCcccchhccCCCCCCEEEccCCCCCCCccCh
Q 037325 106 SPSLLQLK-DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF---FSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 106 ~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
..+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..+. ++..-...|..+.+|+.+.+..+ ......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~ 130 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDS 130 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECT
T ss_pred HhhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehh
Confidence 45677774 5888888754 4433 34568888999999887763 44333456778888888777653 333344
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhh
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 261 (598)
..+.++.+|+.+.+..+. ..+. ...|..+..|+.+.+.++ ++.+.. ..+. ..+|+.+.+..+. .......+.
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~---~~~F~~c~~L~~i~~~~~-~~~I~~-~aF~-~~~l~~i~ip~~~-~~i~~~af~ 202 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVA---DGMFSYCYSLHTVTLPDS-VTAIEE-RAFT-GTALTQIHIPAKV-TRIGTNAFS 202 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEEC---TTTTTTCTTCCEEECCTT-CCEECT-TTTT-TCCCSEEEECTTC-CEECTTTTT
T ss_pred hhhhhhccccccccccee-eeec---ccceecccccccccccce-eeEecc-cccc-ccceeEEEECCcc-cccccchhh
Confidence 567888889988886543 2222 356778888888888754 444433 3333 3568888876542 223445566
Q ss_pred cCCCCCEEEccCCcccccCCcc-------------ccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcc
Q 037325 262 NITSLLCLDLGSNDLQGDIPDG-------------FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
.+.+++................ +.....+..+.+... ....-...|..+..|+.+.+..+. ...
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~~-~~I 279 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYLASVKMPDSV-VSI 279 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSCCEEECCTTC-CEE
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccccEEeccccc-cee
Confidence 7777777766554332110000 111223444444332 122233457778888888886542 333
Q ss_pred cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccC
Q 037325 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408 (598)
Q Consensus 329 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 408 (598)
....|.... .|+.+.+.. .++......|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++...
T Consensus 280 ~~~aF~~c~------~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~- 349 (394)
T 4gt6_A 280 GTGAFMNCP------ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP- 349 (394)
T ss_dssp CTTTTTTCT------TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC-
T ss_pred cCccccccc------ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh-
Confidence 344455555 788888863 455455567888889999988754 44344557888889999988654 33221
Q ss_pred CCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcC
Q 037325 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNEL 456 (598)
Q Consensus 409 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~ 456 (598)
. .++.+|++|+.+++.++.... ..+. .+..|+.+.+..+.+
T Consensus 350 ~---~aF~~C~~L~~i~~~~~~~~~---~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 E---SAFSNCTALNNIEYSGSRSQW---NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp G---GGGTTCTTCCEEEESSCHHHH---HTCB-CCCCC----------
T ss_pred H---hHhhCCCCCCEEEECCceeeh---hhhh-ccCCCCEEEeCCCCE
Confidence 1 357888999999988875321 1222 256788887766544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=5.8e-10 Score=110.94 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=93.0
Q ss_pred cccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhh--CCCCCCCCCCccEEEccC--cccccc
Q 037325 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD--GLSECTNSILLEKLELRF--NQFTGI 358 (598)
Q Consensus 283 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~~~~~~~L~~L~Ls~--n~l~~~ 358 (598)
.+..+|+|+.|++++|. . ..++. + ..++|+.|++..+.+.......+. .++ +|++|+|+. +...+.
T Consensus 167 ll~~~P~L~~L~L~g~~-~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTN-N-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHTCTTCCEEEEECCB-T-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTCC
T ss_pred HHhcCCCCcEEEEeCCC-C-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEeccccccccc
Confidence 34455666666666652 1 11222 2 256777777776666554433333 344 677777642 111111
Q ss_pred -----Ccccc--CCCCCCCEEEccCCcCCccchhhcc---CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 359 -----LPISL--GSLKNLRHLVLWQNSFLGSIPPSIG---NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 359 -----~~~~l--~~l~~L~~L~ls~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
+...+ ..+++|+.|++++|.+.+..+..+. .+++|++|+++.|.+++.........+..+++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 11122 2468888888888887754443332 4678888888888877643111122335567888888888
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCc
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|.+++.....+...+ ...++++.++
T Consensus 317 n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888776666655422 3567777765
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.96 E-value=1.1e-07 Score=96.46 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=82.3
Q ss_pred hccCCC-CCCEEECcCCCCCcccchhccCCCCCCEEEccCCC-CCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHh
Q 037325 133 FIGSLK-ELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL-DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEV 210 (598)
Q Consensus 133 ~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 210 (598)
+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ..+.......|.++.+|+.+.+..+ +..+. ...
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~---~~a 132 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID---SEA 132 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC---TTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh---hhh
Confidence 455653 5888888654 553445668888888888887652 2344444556777777776665543 22222 345
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
|..+.+|+.+.+... +..+.. ..+..+.+|+.+.+..+ ++......+. ..+|+.+.+..+... .....+..+.++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~-~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVAD-GMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhcccccccccce-eeeecc-cceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccc
Confidence 666666666666532 233332 44555566666666543 2222222232 244555555443221 223344455555
Q ss_pred cEEECcC
Q 037325 291 QELDLSG 297 (598)
Q Consensus 291 ~~L~l~~ 297 (598)
+......
T Consensus 208 ~~~~~~~ 214 (394)
T 4gt6_A 208 STITSDS 214 (394)
T ss_dssp CEEEECC
T ss_pred ceecccc
Confidence 5554443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.7e-09 Score=106.04 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=21.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCC--------CcchhccCCCCCCEEECcCC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGF--------QVPEFIGSLKELRYLNLSGS 148 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~--------~~p~~~~~l~~L~~L~L~~n 148 (598)
.++.++++|+.|.+........ .+...+..+|+|+.|+|++|
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 3455677888887765432110 13333444555555555554
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.62 E-value=4.3e-06 Score=84.25 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=59.6
Q ss_pred hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhc
Q 037325 308 NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387 (598)
Q Consensus 308 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l 387 (598)
.+..+.+|+.+.+..+ +.......+.... .|+.+.+..+ ++......+..+.+|+.+.+..+ +.......+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~------~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMK------ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCS------SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCc------cceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 3444455555555332 2222223333333 4555555443 33333345555566666665433 332233345
Q ss_pred cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc
Q 037325 388 GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA 452 (598)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls 452 (598)
.++.+|+.+.+.++.++... . ..+.+|.+|+.+.+..+ ++......|.. |.+|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~-~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLE-P---RVFMDCVKLSSVTLPTA-LKTIQVYAFKN-CKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEEC-T---TTTTTCTTCCEEECCTT-CCEECTTTTTT-CTTCCCCCCC
T ss_pred ccccccccccccccccceeh-h---hhhcCCCCCCEEEcCcc-ccEEHHHHhhC-CCCCCEEEEC
Confidence 55666666666555444322 1 23455566666666433 33222223322 5555555553
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=3.4e-06 Score=85.05 Aligned_cols=276 Identities=10% Similarity=0.016 Sum_probs=169.4
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc-hhccCCCCCCEEEccCCCCCCCc
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
+++..-..+|.+|.+|+.++|..+ ++.+ -..+|.++ +|+.+.+..+ +. .++ ..|.. .+|+++.+..+.. .
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~~~~---~ 126 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPGATT---E 126 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCTTCC---E
T ss_pred CccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCCccc---c
Confidence 566555678999999999999754 5532 23456665 6777777543 44 333 33444 4799998876422 2
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCC-----------CCCcCCCCCccEEEc
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL-----------SFPSLNFASLQVLDL 247 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-----------~~~~~~l~~L~~L~L 247 (598)
.....+.++ .++.+.+..+ +.... ...+..+..++.+.+.......... ...+.....+..+.+
T Consensus 127 i~~~~F~~~-~l~~~~~~~~-v~~i~---~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 127 IGNYIFYNS-SVKRIVIPKS-VTTIK---DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp ECTTTTTTC-CCCEEEECTT-CCEEC---SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred ccccccccc-eeeeeeccce-eeccc---cchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 222334444 4555555433 22222 3456677777777766543321110 011223344555555
Q ss_pred cCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCc
Q 037325 248 SNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327 (598)
Q Consensus 248 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 327 (598)
.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..
T Consensus 202 ~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~ 276 (379)
T 4h09_A 202 PSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKT 276 (379)
T ss_dssp CTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSE
T ss_pred ccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-cee
Confidence 4332 2233344666778888887654 33234456777888888888765 23333456778888888888543 444
Q ss_pred ccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCC
Q 037325 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401 (598)
Q Consensus 328 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 401 (598)
.....|..+. +|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus 277 i~~~aF~~c~------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 277 VPYLLCSGCS------NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECTTTTTTCT------TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccc------ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 4455566655 7999999888787666778888999999998654 55444567888899999988654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=5.9e-08 Score=86.91 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=44.5
Q ss_pred cchhhcCCCCCCEEecccc-cCCcccchhhhCCCCCCCCCCccEEEccCccccccC----ccccCCCCCCCEEEccCCcC
Q 037325 305 LSRNLGKLCNLRTMILSRN-NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL----PISLGSLKNLRHLVLWQNSF 379 (598)
Q Consensus 305 ~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l 379 (598)
+...+...++|++|++++| .+.......+...- ...++|++|++++|.+.... ...+...++|++|++++|.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L--~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL--KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH--TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH--HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3444556666777777766 66554333222110 00114555555555554321 22223334455555555554
Q ss_pred Ccc----chhhccCCCCCCEEeC--cCCcCC
Q 037325 380 LGS----IPPSIGNLTLLKELYL--ASNQMN 404 (598)
Q Consensus 380 ~~~----~~~~l~~l~~L~~L~l--~~n~l~ 404 (598)
.+. +...+...+.|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 432 2233344444555555 444444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.6e-08 Score=89.26 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=49.7
Q ss_pred CccEEEccCc-ccccc----CccccCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhh
Q 037325 344 LLEKLELRFN-QFTGI----LPISLGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQH 414 (598)
Q Consensus 344 ~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 414 (598)
.|++|++++| .+... +...+...++|++|++++|.+.+. +...+...+.|++|++++|.|.+.........
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4555555555 44322 222333445555555555555432 22233334455555555555543322222233
Q ss_pred hcCCCCCCEEEc--cCccCccccchHHHh---cCCCCCEEEccCCcC
Q 037325 415 LKNQTELRTLVL--NKARISDTISDWFWQ---LSLTLDELDVAYNEL 456 (598)
Q Consensus 415 l~~~~~L~~L~l--~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~ 456 (598)
+...+.|++|++ ++|.+++.....+.. ..+.|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 444455555555 445554433222211 124455555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=9.2e-08 Score=90.03 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=36.0
Q ss_pred cCCCCeEeCcCCcccc--ccchhccCCCCCCEEECCCCcCccccchhccCCC--CCCEEEccCCCCcccCC
Q 037325 521 LKQLITLVISNNNLSG--EIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR--TVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 521 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~--~L~~L~l~~n~l~g~~P 587 (598)
++.|++|+|++|.|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4556666666666655 3445555566666666666666543 2233333 56666666666665555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=7.3e-07 Score=83.89 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=61.7
Q ss_pred CcCCcEEEccCCcccc--cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCC--CCCEEECCCCcCcccc
Q 037325 487 SFNVTKLYLRDNSFSG--LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNIS--FLYILDMSNNSLSGST 562 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~--~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~ 562 (598)
+++|+.|+|++|+|++ .+|..+.. +++|+.|+|++|.|++. ..+..++ +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~----------l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQK----------APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHH----------STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhh----------CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 5689999999999986 44555555 89999999999999864 2344444 8999999999999876
Q ss_pred ch-------hccCCCCCCEEEc
Q 037325 563 PE-------SIGSLRTVKFLVL 577 (598)
Q Consensus 563 p~-------~l~~l~~L~~L~l 577 (598)
|. .+..+++|+.||-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 63 3678899998863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.2e-06 Score=76.38 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=63.1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCc-CCccchhhccCC----CCCCEEeCcCCc-CCcccCCCchhhhcC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS-FLGSIPPSIGNL----TLLKELYLASNQ-MNGQKISDSYQHLKN 417 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 417 (598)
.|++||+++|.++...-..+..+++|+.|++++|. +++..-..+..+ ++|++|++++|. +++ ..+..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHHHHHhc
Confidence 58888888888877666667788888888888884 665554555554 468888888874 664 34556778
Q ss_pred CCCCCEEEccCcc-Ccc
Q 037325 418 QTELRTLVLNKAR-ISD 433 (598)
Q Consensus 418 ~~~L~~L~l~~n~-l~~ 433 (598)
+++|+.|++++|. +++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 8888888888886 554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.8e-06 Score=75.18 Aligned_cols=83 Identities=8% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc-cccccchhccCC----CCCCEEECCCC-cCcccc
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN-LSGEIPLLFSNI----SFLYILDMSNN-SLSGST 562 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~ls~N-~l~~~~ 562 (598)
.|+.||+++|.+++.--..+.. +++|+.|+|++|. +++.--..++.+ ++|++|+|++| +++..-
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~----------~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG----------LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT----------CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcC----------CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 5778888888776544433433 7888888888884 776655566654 47888888887 477666
Q ss_pred chhccCCCCCCEEEccCCC
Q 037325 563 PESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 563 p~~l~~l~~L~~L~l~~n~ 581 (598)
-..+..+++|++|++++|+
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 6667788888888888875
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=3.8e-05 Score=68.16 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 366 LKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
-+.|+.|+|++|++.+. +.+.+...+.|++|+|++|.|.+.......+.+...+.|+.|+|++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34444444444444322 2223334445555555555554433222233444444555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=8.4e-05 Score=65.92 Aligned_cols=93 Identities=9% Similarity=0.114 Sum_probs=66.2
Q ss_pred ccCCCCCCCEEEccCC-cCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc
Q 037325 362 SLGSLKNLRHLVLWQN-SFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 362 ~l~~l~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+..-+.|+.|++++| ++.+. +...+...+.|+.|+|++|.+.+.......+.+...+.|+.|+|++|+|++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455677888888875 66542 455677778899999999988876655555667778889999999998887666
Q ss_pred hHHHhcC---CCCCEEEccCC
Q 037325 437 DWFWQLS---LTLDELDVAYN 454 (598)
Q Consensus 437 ~~~~~~~---~~L~~L~ls~n 454 (598)
..+...+ +.|++|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 5555432 45777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.001 Score=55.04 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.9
Q ss_pred cEEEccCCccc-ccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 491 TKLYLRDNSFS-GLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 491 ~~L~ls~n~l~-~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l------------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF------------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC------------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC------------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888775 4566554 246888888888888555556777888888888888664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.64 E-value=0.0032 Score=51.99 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=41.3
Q ss_pred CEEEcccCcCc-ccCCCCC-cCCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 470 AKVDLSFNNFE-GRLLLWS-FNVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 470 ~~l~ls~n~l~-~~~~~~~-~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
..++-+++.++ ..+|..+ +++++|||++|+|+ .+|.. +.. +++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~----------l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDA----------LPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGG----------CTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhh----------ccccCEEEecCCCee
Confidence 46788888886 4666554 47999999999998 45544 333 788999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.92 E-value=54 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=15.7
Q ss_pred hhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcC
Q 037325 259 WLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSG 297 (598)
Q Consensus 259 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 297 (598)
.|.++++|+.+.|..+ ++.....+|..|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444444444444332 1212233444444454444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.59 E-value=80 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=19.0
Q ss_pred ccCCCCeEeCcCCccccccchhccCCCCCCEEECCC
Q 037325 520 NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSN 555 (598)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~ 555 (598)
.+++|+.+.+-.+ ++..-...|.+|.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3566666666543 2323344566666666666554
Done!