BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037329
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6Y288|B3GLT_HUMAN Beta-1,3-glucosyltransferase OS=Homo sapiens GN=B3GALTL PE=1 SV=2
Length = 498
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 144 TILETFREGDED-VRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHAS 202
ILE F +D W V+ DDDT++ + L +L+ YD + +++G
Sbjct: 329 AILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVFLGERY--GYGLGTGG 386
Query: 203 FNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQ 262
++ GG G S V L A +C Y N D++L C + LG+ +T FHQ
Sbjct: 387 YSYITGGGGMVFSREAVRRLLASKCRC---YSNDAPDDMVLGMCFSGLGIPVTHSPLFHQ 443
>sp|Q9NS00|C1GLT_HUMAN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Homo sapiens GN=C1GALT1 PE=1 SV=1
Length = 363
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 139 VRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSN 198
++ F+ + E + E D W++ ADDDT + +DNL +L+KYD + +Y G +
Sbjct: 148 IKAFQYVHEHYLE---DADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQ 204
Query: 199 FHASFNMAFGGAGYALSYPLVEAL--AAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
+ S GGAGY LS ++ A K DKC DL L C+ + V
Sbjct: 205 GYMS-----GGAGYVLSKEALKRFVDAFKTDKCTHSSS---IEDLALGRCMEIMNV 252
>sp|Q08BL3|C1GTA_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A
OS=Danio rerio GN=c1galt1a PE=2 SV=1
Length = 408
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 140 RVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNF 199
+ R + + W++ ADDDT + VDNL +L+ Y Q +Y G + +
Sbjct: 151 KTIRAFHYALKNHGHEADWFLKADDDTFVVVDNLRWILSNYTPEQPIYFGKRFKPYTKQG 210
Query: 200 HASFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
+ S GGAGY LS + F V + DL + CL +GV
Sbjct: 211 YMS-----GGAGYVLSKEALRRFVEGFSTKVCTHTTP-VEDLAMGQCLEKMGV 257
>sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Mus musculus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYA 213
ED W++ ADDDT + VDNL +L+KY+ Q +Y G + + S GGAGY
Sbjct: 160 EDADWFMKADDDTYVIVDNLRWLLSKYNPEQPIYFGRRFKPYVKQGYMS-----GGAGYV 214
Query: 214 LSYPLVEAL--AAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
LS + A K +KC DL L C+ + V
Sbjct: 215 LSKEALRRFVNAFKTEKCTHSSS---IEDLALGRCMEIINV 252
>sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase OS=Mus musculus GN=B3galtl PE=2 SV=3
Length = 489
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 144 TILETF-REGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHAS 202
ILE F + W V+ DDDT++ + L +L+ YD + +++G
Sbjct: 320 AILEKFLNHSHNKISWLVIVDDDTLISISRLRHLLSCYDSSDPVFLGERY--GYGLGTGG 377
Query: 203 FNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQ 262
++ GG G S + L +C Y N D++L C + LGV +T FHQ
Sbjct: 378 YSYVTGGGGMVFSREAIRRLLVSSCRC---YSNDAPDDMVLGMCFSGLGVPVTHSPLFHQ 434
>sp|Q0VC84|C1GLT_BOVIN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Bos taurus GN=C1GALT1 PE=2 SV=1
Length = 368
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYA 213
ED W++ ADDDT + +DNL +L+KY+ + +Y G + + S GGAGY
Sbjct: 160 EDADWFMKADDDTYVILDNLRWLLSKYNPEEPIYFGRRFKPYVKQGYMS-----GGAGYV 214
Query: 214 LSYPLVEALAAKF--DKCVEKYQNLYASDLMLYSCLADLGV 252
LS ++ F DKC + DL L C+ + V
Sbjct: 215 LSKEALKRFVEAFKTDKCT---HSSSIEDLALGRCMEIINV 252
>sp|Q7SYI5|C1GTB_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
OS=Danio rerio GN=c1galt1b PE=2 SV=1
Length = 374
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 113 PSSPPFRVNENITRLKSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDN 172
P P +N R + Y K +R F ++E + DE W++ ADDDT + VDN
Sbjct: 127 PDFPTVGLNTKEGRDQLYWKT-----IRAFHYVME--KHSDE-ADWFLKADDDTYVIVDN 178
Query: 173 LVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEK 232
L +LA++ +Y G + + S GGAGY LS + F V
Sbjct: 179 LRWILARHSPEDPVYFGRRFKPYVKQGYMS-----GGAGYVLSKEALRRFVEGFRTKVCT 233
Query: 233 YQNLYASDLMLYSCLADLGV 252
+ DL + C+ +GV
Sbjct: 234 HTTS-VEDLAMGQCMEKIGV 252
>sp|Q9JJ05|C1GLT_RAT Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Rattus norvegicus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYA 213
ED W++ ADDDT + +DNL +L+KY+ Q +Y G + + S GGAGY
Sbjct: 160 EDADWFMKADDDTYVILDNLRWLLSKYNPEQPIYFGRRFKPYVKQGYMS-----GGAGYV 214
Query: 214 LSYPLVEAL--AAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
LS + A K +KC DL L C+ + V
Sbjct: 215 LSKEALRRFVDAFKTEKCTHSSS---IEDLALGRCMEIIKV 252
>sp|Q5F3G7|C1GLT_CHICK Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Gallus gallus GN=C1GALT1 PE=2 SV=1
Length = 366
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYA 213
+D W++ ADDDT + +DNL +L+KY Q +Y G + + S GGAGY
Sbjct: 161 DDADWFMKADDDTYVILDNLRWLLSKYSPEQPIYFGRRFKPYVKQGYMS-----GGAGYV 215
Query: 214 LSYPLVEALAAKF--DKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHSDISG 271
LS ++ F +KC DL L C+ + V Q D SG
Sbjct: 216 LSKEALKRFVTAFKTNKCSHSSS---IEDLALGKCMEIINV---------QAGDSRDTSG 263
Query: 272 LLSALPQIP 280
+ P +P
Sbjct: 264 RETFHPFVP 272
>sp|Q6GNL1|C1GLT_XENLA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Xenopus laevis GN=c1galt1 PE=2 SV=1
Length = 360
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYAL 214
+ W+ ADDDT + +DNL +L+ Y Q +Y G + + S GGAGY L
Sbjct: 149 ETEWFFKADDDTYVIMDNLRWMLSNYTADQPIYFGKRFKPYIKQGYMS-----GGAGYVL 203
Query: 215 SYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
S + F V K+ D+ + +C+ +GV
Sbjct: 204 SREALIRFVEGFRTGVCKHTT-STEDVAIGNCMQLMGV 240
>sp|O12971|LFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Gallus
gallus GN=LFNG PE=2 SV=1
Length = 363
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 157 RWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSN-FH-ASFNMA 206
+W+ DDD + V LV++L+ Y HTQ +YIG S E +S N H F A
Sbjct: 178 KWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENKMHPVHFWFA 237
Query: 207 FGGAGYALSYPLVEAL-----AAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261
GGAG+ +S L + F EK + L + Y + LGV L FH
Sbjct: 238 TGGAGFCISRGLALKMSPWASGGHFMSTAEKIR-LPDDCTIGYIIESVLGVKLIRSNLFH 296
Query: 262 QIDLHSDISGLLSALPQIPVLSLH 285
L L Q+P +H
Sbjct: 297 S---------HLENLHQVPKTEIH 311
>sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Xenopus
laevis GN=lfng PE=2 SV=1
Length = 375
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 153 DEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVS-SNFH-AS 202
+ D +W+ DDD + V LV++L++Y HT +YIG S E +S SN +
Sbjct: 186 ESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESNMRPVN 245
Query: 203 FNMAFGGAGYALSYPLVE-----ALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLE 257
F A GGAG+ +S L A F EK + L + Y + LGV L
Sbjct: 246 FWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIR-LPDDCTIGYIIESVLGVKLIRS 304
Query: 258 KGFHQIDLHSDISGLLSALPQIPVLSLHH 286
FH L L Q+P +H+
Sbjct: 305 NLFHS---------HLENLHQVPQSEIHN 324
>sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Danio
rerio GN=lfng PE=2 SV=2
Length = 374
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 157 RWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSNFHASFNMAF- 207
+W+ DDD + LV++L+ Y HTQ +YIG S E + N N F
Sbjct: 189 KWFCHVDDDNYVNTKTLVKLLSNYPHTQDMYIGKPSLDRPIEATERLGDNKMRPVNFWFA 248
Query: 208 -GGAGYALSYPLVE-----ALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261
GGAG+ +S L A F EK + L + Y + LGV+LT FH
Sbjct: 249 TGGAGFCISRGLALKMSPWASGGHFMNTAEKIR-LPDDCTIGYIIESVLGVSLTRSSLFH 307
>sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Bos
taurus GN=LFNG PE=2 SV=1
Length = 380
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 70/181 (38%), Gaps = 32/181 (17%)
Query: 120 VNENITRLKSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAK 179
VN N + S + + V R I E+ R +W+ DDD + V L+ +L
Sbjct: 165 VNTNCSAAHSRQALSCKMAVEYDRFI-ESGR------KWFCHVDDDNYVNVRALLRLLGS 217
Query: 180 YDHTQYLYIGTNS--------ECVSSN--FHASFNMAFGGAGYALSYPLVE-----ALAA 224
Y HTQ +Y+G S E VS N F A GGAG+ +S L A
Sbjct: 218 YPHTQDVYLGKPSLDRPIQATERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGG 277
Query: 225 KFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHSDISGLLSALPQIPVLSL 284
F E+ + L + Y A LGV L FH L L Q+P L
Sbjct: 278 HFMSTAERIR-LPDDCTIGYIVEALLGVPLVRCGLFHS---------HLENLQQVPASEL 327
Query: 285 H 285
H
Sbjct: 328 H 328
>sp|Q54YF7|MANB_DICDI Alpha-mannosidase B OS=Dictyostelium discoideum GN=manB PE=3 SV=1
Length = 1035
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 194 CVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVT 253
C++S++ A A +GY SYPL++ A D + + LY+ SC G
Sbjct: 369 CLASDYQAFNTCANWWSGYYTSYPLLKQTARDSDSLLRVGEMLYS-----LSCFYSNGFD 423
Query: 254 LTLEKGFHQIDLHSDISGLLS 274
GF+ + +H ++SG+L+
Sbjct: 424 FDFNIGFYALSMHRNVSGILT 444
>sp|Q6ZQ11|CHSS1_MOUSE Chondroitin sulfate synthase 1 OS=Mus musculus GN=Chsy1 PE=2 SV=2
Length = 800
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 17/188 (9%)
Query: 50 IWPASSSNVTSPTNINHIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFL 109
+WP S+ P + N + G+ + R W + F S +
Sbjct: 69 LWPQGSAAEGVPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSDTSI 128
Query: 110 PWPPSSPPFRVNENITRLKSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILF 169
P P P R ++ SY K SF + + + + + + E W++ ADDD +
Sbjct: 129 PIPVV--PLRGVDD-----SYPPQKKSFMM--LKYMHDHYLDKYE---WFMRADDDVYIK 176
Query: 170 VDNLVEVLAKYDHTQYLY-----IGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAA 224
D L L + ++ L+ +GT E N GG G LS ++ +A
Sbjct: 177 GDRLESFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVILSREVLRRMAP 236
Query: 225 KFDKCVEK 232
KC+ +
Sbjct: 237 HIGKCLRE 244
>sp|Q18515|C1GLT_CAEEL Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Caenorhabditis elegans GN=C38H2.2 PE=2 SV=2
Length = 389
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 81 RRAYVEAWWRPNVTRGYLFLERFPSREFLPWPPSSPPFRVNENITRLKSYEKIKNSFQVR 140
R +V+A W + Y+F+ E P +N + R + K K +F+
Sbjct: 120 RAKHVKATWAKRCNK-YVFMSSEEDAEL-------PAINLNVSEGRDYLWAKTKGAFKY- 170
Query: 141 VFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFH 200
++ L D W++ ADDDT + ++NL +L + + ++ G + + +
Sbjct: 171 IYDHHLN-------DYDWFLKADDDTYVVMENLRFMLLAHSPDEPIHFGCKFKPFTQGGY 223
Query: 201 ASFNMAFGGAGYALSYPLVEAL--AAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
S GGAGY LS ++ A DK + + A D + CL +GV
Sbjct: 224 HS-----GGAGYVLSREALKKFIEVALPDKSLCSQNHGGAEDAEMGKCLEKVGV 272
>sp|Q7K237|C1GLT_DROME Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Drosophila melanogaster GN=C1GalTA PE=2 SV=1
Length = 388
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYAL 214
D W++ ADDDT V+N+ +L Y +Y G + + S GGAGY L
Sbjct: 173 DADWFLKADDDTYTIVENMRYMLYPYSPETPVYFGCKFKPYVKQGYMS-----GGAGYVL 227
Query: 215 SYPLVE--ALAAKFDKCVEKYQNLYASDLMLYSCLADLGV 252
S V + A + + K N A D+ + CL ++ V
Sbjct: 228 SREAVRRFVVEALPNPKLCKSDNSGAEDVEIGKCLQNVNV 267
>sp|Q9YHB3|RFNG_NOTVI Beta-1,3-N-acetylglucosaminyltransferase radical fringe
OS=Notophthalmus viridescens GN=RFNG PE=2 SV=1
Length = 396
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 153 DEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSNFHAS-- 202
+ + +W+ DDD + + +L +LA + H+Q +Y+G S E V S+ AS
Sbjct: 207 ESERKWFCHVDDDNYVNLFSLRHLLASFSHSQDVYLGRPSLDHPIEAIERVKSDGSASVR 266
Query: 203 FNMAFGGAGYALSYPLV 219
F A GGAG+ +S L
Sbjct: 267 FWFATGGAGFCISRGLA 283
>sp|Q5DTK1|CHSS3_MOUSE Chondroitin sulfate synthase 3 OS=Mus musculus GN=Chsy3 PE=1 SV=3
Length = 884
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 158 WYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS-----ECVSSNFHASFNMAFGGAGY 212
W++ ADDD + D L E L + ++ LY+G E N GG G
Sbjct: 258 WFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGM 317
Query: 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVT 253
S ++ + +C+ + + D+ + C+ G T
Sbjct: 318 IFSREVLRRMVPHIGECLREMYTTH-EDVEVGRCVRRFGGT 357
>sp|Q86X52|CHSS1_HUMAN Chondroitin sulfate synthase 1 OS=Homo sapiens GN=CHSY1 PE=1 SV=3
Length = 802
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 17/188 (9%)
Query: 50 IWPASSSNVTSPTNINHIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFL 109
+WP S P + N + G+ + R W + F S +
Sbjct: 70 LWPPGSDPDGGPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSEGSDTSV 129
Query: 110 PWPPSSPPFRVNENITRLKSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILF 169
P P P R ++ SY K SF + + + + + + E W++ ADDD +
Sbjct: 130 PIPVV--PLRGVDD-----SYPPQKKSFMM--LKYMHDHYLDKYE---WFMRADDDVYIK 177
Query: 170 VDNLVEVLAKYDHTQYLY-----IGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAA 224
D L L + ++ L+ +GT E N GG G +S ++ +
Sbjct: 178 GDRLENFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVP 237
Query: 225 KFDKCVEK 232
KC+ +
Sbjct: 238 HIGKCLRE 245
>sp|Q70JA7|CHSS3_HUMAN Chondroitin sulfate synthase 3 OS=Homo sapiens GN=CHSY3 PE=2 SV=3
Length = 882
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 158 WYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS-----ECVSSNFHASFNMAFGGAGY 212
W++ ADDD + D L E L + ++ LY+G E N GG G
Sbjct: 256 WFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGM 315
Query: 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVT 253
S ++ + +C+ + + D+ + C+ G T
Sbjct: 316 IFSREVLRRMVPHIGECLREMYTTH-EDVEVGRCVRRFGGT 355
>sp|Q1RLK6|B3GN4_MOUSE UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
OS=Mus musculus GN=B3gnt4 PE=2 SV=2
Length = 350
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 162 ADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSN------FHASFNMA--------F 207
DDD + V N++E L +D Q +G N + F+M
Sbjct: 191 GDDDVFIHVPNVLEFLEGWDPAQDFLVGDVIRLARPNRNTKVKYFIPFSMYRARHYPPYA 250
Query: 208 GGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHS 267
GG GY +S +A +E+ + D+ + CL LGVT GF +
Sbjct: 251 GGGGYVMS----QATVRHLHMAMEEAELFPIDDVFVGMCLRKLGVTPIHHAGFKTFGIQQ 306
Query: 268 DIS 270
++
Sbjct: 307 PLN 309
>sp|Q24342|FNG_DROME Fringe glycosyltransferase OS=Drosophila melanogaster GN=fng PE=1
SV=1
Length = 412
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 146 LETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGT-----------NSEC 194
L+ F E + +W+ DDD + V LV++L +Y + Y+G +S+
Sbjct: 221 LDVFLESGK--KWFCHFDDDNYVNVPRLVKLLDEYSPSVDWYLGKPSISSPLEIHLDSKN 278
Query: 195 VSSNFHASFNMAFGGAGYALSYPL 218
++N +F A GGAG+ LS L
Sbjct: 279 TTTNKKITFWFATGGAGFCLSRAL 302
>sp|Q924T4|LFNG_RAT Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Rattus
norvegicus GN=Lfng PE=2 SV=1
Length = 378
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 25/144 (17%)
Query: 157 RWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSN--FHASFNMA 206
+W+ DDD + + L+ +LA Y HTQ +YIG S E +S + F A
Sbjct: 193 KWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATERISEHRVRPVHFWFA 252
Query: 207 FGGAGYALSYPLVE-----ALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261
GGAG+ +S L A F E+ + L + Y A LGV L FH
Sbjct: 253 TGGAGFCISRGLALKMGPWASGGHFMSTAERIR-LPDDCTIGYIVEALLGVPLIRSGLFH 311
Query: 262 QIDLHSDISGLLSALPQIPVLSLH 285
L L Q+P LH
Sbjct: 312 S---------HLENLQQVPTTELH 326
>sp|O09010|LFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Mus
musculus GN=Lfng PE=1 SV=1
Length = 378
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 25/144 (17%)
Query: 157 RWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSN--FHASFNMA 206
+W+ DDD + + L+ +LA Y HTQ +YIG S E +S + F A
Sbjct: 193 KWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATERISEHKVRPVHFWFA 252
Query: 207 FGGAGYALSYPLVE-----ALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261
GGAG+ +S L A F E+ + L + Y A LGV L FH
Sbjct: 253 TGGAGFCISRGLALKMGPWASGGHFMSTAERIR-LPDDCTIGYIVEALLGVPLIRSGLFH 311
Query: 262 QIDLHSDISGLLSALPQIPVLSLH 285
L L Q+P LH
Sbjct: 312 S---------HLENLQQVPTTELH 326
>sp|Q8MJU5|FETA_CANFA Alpha-fetoprotein OS=Canis familiaris GN=AFP PE=2 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 112 PPSSPPFRVNENITRLKSYEKIKNSFQVR 140
PPS PPF+V E +T K+YE+ ++ F R
Sbjct: 133 PPSIPPFQVAEPVTSCKAYEENRDMFMNR 161
>sp|Q8NES3|LFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Homo
sapiens GN=LFNG PE=1 SV=2
Length = 379
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 25/144 (17%)
Query: 157 RWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS--------ECVSSN--FHASFNMA 206
+W+ DDD + + L+ +LA Y HT+ +Y+G S E VS N F A
Sbjct: 194 KWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFA 253
Query: 207 FGGAGYALSYPLVE-----ALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261
GGAG+ +S L A F E+ + L + Y A LGV L FH
Sbjct: 254 TGGAGFCISRGLALKMSPWASGGHFMNTAERIR-LPDDCTIGYIVEALLGVPLIRSGLFH 312
Query: 262 QIDLHSDISGLLSALPQIPVLSLH 285
L L Q+P LH
Sbjct: 313 S---------HLENLQQVPTSELH 327
>sp|P41881|YPT3_CAEEL Uncharacterized protein F37A4.3 OS=Caenorhabditis elegans
GN=F37A4.3 PE=4 SV=1
Length = 229
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 143 RTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHAS 202
+ IL T R + +WY+ A D+ FV+ L++ L+K+D +Y + +FHA
Sbjct: 94 KMILHT-RRLPQQAQWYMFAFDNNYFFVERLIKELSKFDSHLPIY------TILRDFHAD 146
Query: 203 FNMAF 207
N +
Sbjct: 147 VNFNY 151
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 276 LPQIPVLSLHHLDVINPIFPSMSRSKSINHLMKAAKLDHSRLLQQTICYDMQRNWSFSIS 335
+P+IPV++ HLD I+ + + + KL S Q + +D++ + F +
Sbjct: 1 MPRIPVINTSHLDRIDELLVDNTETGEF-------KLHRSVFTDQAL-FDLEMKYIFEGN 52
Query: 336 WGYTTHIYESILPRN 350
W Y H ES +P N
Sbjct: 53 WVYLAH--ESQIPNN 65
>sp|Q9P2E5|CHPF2_HUMAN Chondroitin sulfate glucuronyltransferase OS=Homo sapiens GN=CHPF2
PE=2 SV=2
Length = 772
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYAL 214
D W+ + DDT + L + Q LY+G E + + A + GG GY L
Sbjct: 174 DYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARY--CHGGFGYLL 231
Query: 215 SYPLVEALAAKFDKCVEKYQNLYAS-DLMLYSCLAD-LGV 252
S L+ L D C + L A D L CL D LGV
Sbjct: 232 SRSLLLRLRPHLDGC--RGDILSARPDEWLGRCLIDSLGV 269
>sp|Q8IUX4|ABC3F_HUMAN DNA dC->dU-editing enzyme APOBEC-3F OS=Homo sapiens GN=APOBEC3F
PE=1 SV=3
Length = 373
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 350 NFVVKPLETFRPWRRSDRQPLYMFNT-RGITRNSCEA--PHVFFFH 392
NFV + F PW + D ++ T + I RN EA PH+F+FH
Sbjct: 158 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFH 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,108,226
Number of Sequences: 539616
Number of extensions: 7187496
Number of successful extensions: 15568
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15529
Number of HSP's gapped (non-prelim): 51
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)