Query 037329
Match_columns 474
No_of_seqs 338 out of 1179
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 1E-108 3E-113 858.6 41.9 411 59-474 116-532 (537)
2 PF04646 DUF604: Protein of un 100.0 1.1E-76 2.5E-81 572.0 21.9 252 197-449 1-255 (255)
3 KOG2246 Galactosyltransferases 100.0 2E-44 4.4E-49 370.9 14.4 267 66-363 92-363 (364)
4 PF02434 Fringe: Fringe-like; 100.0 1.4E-32 3.1E-37 271.4 9.7 211 61-288 2-232 (252)
5 KOG2287 Galactosyltransferases 99.7 4E-17 8.7E-22 168.6 16.1 208 64-291 94-329 (349)
6 PLN03193 beta-1,3-galactosyltr 99.7 7.5E-16 1.6E-20 159.4 15.3 182 66-262 140-355 (408)
7 PLN03133 beta-1,3-galactosyltr 99.6 4.3E-15 9.4E-20 161.9 17.4 180 65-257 385-592 (636)
8 PF01762 Galactosyl_T: Galacto 99.6 4.5E-15 9.7E-20 140.8 12.1 166 80-258 1-195 (195)
9 KOG3708 Uncharacterized conser 99.3 1.2E-11 2.7E-16 129.1 10.8 165 65-256 26-191 (681)
10 PTZ00210 UDP-GlcNAc-dependent 99.2 3.4E-10 7.3E-15 116.3 13.9 147 138-291 183-347 (382)
11 KOG2288 Galactosyltransferases 99.1 3.3E-10 7.1E-15 110.3 11.0 181 66-262 12-225 (274)
12 PF13506 Glyco_transf_21: Glyc 94.5 0.33 7.1E-06 45.5 10.2 100 153-258 29-147 (175)
13 cd04186 GT_2_like_c Subfamily 92.9 0.25 5.5E-06 43.4 6.1 85 155-259 74-159 (166)
14 KOG2246 Galactosyltransferases 92.8 0.12 2.5E-06 54.3 4.3 71 59-130 66-139 (364)
15 cd02520 Glucosylceramide_synth 91.9 0.52 1.1E-05 43.9 7.2 87 154-259 85-171 (196)
16 cd02526 GT2_RfbF_like RfbF is 89.9 1.7 3.7E-05 41.1 8.8 100 154-258 74-197 (237)
17 PF05679 CHGN: Chondroitin N-a 89.4 0.35 7.6E-06 52.9 3.9 65 226-291 2-71 (499)
18 PF13641 Glyco_tranf_2_3: Glyc 89.2 0.8 1.7E-05 43.2 5.8 95 155-257 86-202 (228)
19 TIGR03469 HonB hopene-associat 87.1 38 0.00082 35.5 17.3 97 153-255 131-252 (384)
20 PF13632 Glyco_trans_2_3: Glyc 85.7 3.2 6.9E-05 38.3 7.5 95 158-258 1-117 (193)
21 TIGR03472 HpnI hopanoid biosyn 85.4 45 0.00098 34.7 16.8 100 154-259 125-247 (373)
22 cd06421 CESA_CelA_like CESA_Ce 85.4 1.8 3.9E-05 40.7 5.8 93 155-255 84-201 (234)
23 cd04185 GT_2_like_b Subfamily 85.0 3.1 6.7E-05 38.5 7.1 85 154-254 78-163 (202)
24 cd06427 CESA_like_2 CESA_like_ 84.1 2.5 5.5E-05 40.7 6.3 97 154-257 83-204 (241)
25 cd06437 CESA_CaSu_A2 Cellulose 82.8 3.4 7.5E-05 39.2 6.6 96 154-256 86-204 (232)
26 TIGR01556 rhamnosyltran L-rham 82.8 4.3 9.3E-05 40.1 7.5 99 154-258 72-194 (281)
27 cd06434 GT2_HAS Hyaluronan syn 82.6 5.2 0.00011 37.7 7.7 102 154-255 76-203 (235)
28 PF01755 Glyco_transf_25: Glyc 81.7 4.8 0.0001 37.7 7.1 22 205-226 168-189 (200)
29 cd04192 GT_2_like_e Subfamily 80.4 6.5 0.00014 36.6 7.5 94 154-252 81-195 (229)
30 cd06436 GlcNAc-1-P_transferase 79.3 4.4 9.5E-05 37.7 5.9 67 155-222 89-178 (191)
31 cd04188 DPG_synthase DPG_synth 79.2 17 0.00037 33.9 9.9 101 155-261 82-204 (211)
32 PRK11204 N-glycosyltransferase 77.7 4.9 0.00011 42.2 6.3 99 154-259 133-254 (420)
33 cd06438 EpsO_like EpsO protein 77.5 4 8.6E-05 37.4 4.9 69 153-221 79-169 (183)
34 cd06420 GT2_Chondriotin_Pol_N 76.9 9.2 0.0002 34.4 7.1 93 154-255 78-170 (182)
35 cd06435 CESA_NdvC_like NdvC_li 76.7 14 0.0003 35.0 8.6 96 154-256 83-200 (236)
36 cd04195 GT2_AmsE_like GT2_AmsE 74.9 6.2 0.00013 36.2 5.5 95 154-256 79-192 (201)
37 cd06439 CESA_like_1 CESA_like_ 74.7 8.9 0.00019 36.7 6.7 30 155-184 109-138 (251)
38 cd06532 Glyco_transf_25 Glycos 74.4 4.8 0.00011 35.5 4.4 37 154-226 81-117 (128)
39 cd02522 GT_2_like_a GT_2_like_ 73.8 12 0.00027 34.7 7.3 92 155-254 72-176 (221)
40 cd02525 Succinoglycan_BP_ExoA 73.5 11 0.00024 35.5 7.0 96 155-256 81-199 (249)
41 cd04184 GT2_RfbC_Mx_like Myxoc 72.9 12 0.00026 34.3 6.9 100 154-259 82-195 (202)
42 cd06442 DPM1_like DPM1_like re 71.4 23 0.0005 32.9 8.6 94 156-256 79-194 (224)
43 cd06433 GT_2_WfgS_like WfgS an 69.5 24 0.00052 31.7 8.0 95 155-255 75-184 (202)
44 PRK14583 hmsR N-glycosyltransf 69.2 10 0.00022 40.6 6.2 99 154-259 154-275 (444)
45 cd04196 GT_2_like_d Subfamily 68.3 24 0.00051 32.4 7.8 93 153-251 77-190 (214)
46 PLN02726 dolichyl-phosphate be 61.7 53 0.0012 31.5 9.2 100 154-259 92-212 (243)
47 COG1216 Predicted glycosyltran 61.6 1E+02 0.0022 31.0 11.5 99 158-261 87-216 (305)
48 cd00761 Glyco_tranf_GTA_type G 59.2 25 0.00054 29.3 5.7 74 155-250 77-150 (156)
49 cd06913 beta3GnTL1_like Beta 1 57.9 26 0.00057 32.8 6.1 38 154-191 83-120 (219)
50 cd06423 CESA_like CESA_like is 57.7 19 0.00041 31.0 4.8 25 155-179 78-102 (180)
51 cd04187 DPM1_like_bac Bacteria 56.1 41 0.00089 30.3 6.9 70 155-224 80-164 (181)
52 cd04179 DPM_DPG-synthase_like 54.0 31 0.00067 30.9 5.7 37 156-192 80-117 (185)
53 COG1215 Glycosyltransferases, 52.2 42 0.0009 35.0 7.1 101 153-260 135-260 (439)
54 PRK14716 bacteriophage N4 adso 51.8 35 0.00076 37.6 6.6 102 154-257 157-281 (504)
55 cd04191 Glucan_BSP_ModH Glucan 51.6 39 0.00084 33.5 6.4 106 154-259 94-225 (254)
56 PF13704 Glyco_tranf_2_4: Glyc 48.8 23 0.0005 29.0 3.7 25 153-177 69-97 (97)
57 PTZ00260 dolichyl-phosphate be 46.7 1E+02 0.0022 31.8 8.8 99 155-259 162-286 (333)
58 cd02510 pp-GalNAc-T pp-GalNAc- 43.5 59 0.0013 32.4 6.3 46 207-256 171-216 (299)
59 PRK10714 undecaprenyl phosphat 41.2 64 0.0014 33.1 6.3 71 154-224 89-174 (325)
60 PF00535 Glycos_transf_2: Glyc 35.5 21 0.00046 30.6 1.5 36 155-192 78-116 (169)
61 TIGR03030 CelA cellulose synth 35.5 97 0.0021 35.6 7.2 94 154-256 227-349 (713)
62 PF02485 Branch: Core-2/I-Bran 30.7 2.6E+02 0.0056 26.9 8.4 152 67-224 1-172 (244)
63 PRK11234 nfrB bacteriophage N4 30.6 2.6E+02 0.0057 32.4 9.5 102 155-258 155-279 (727)
64 PF05637 Glyco_transf_34: gala 23.5 77 0.0017 31.2 3.3 34 144-178 66-101 (239)
65 TIGR03111 glyc2_xrt_Gpos1 puta 22.7 1.4E+02 0.0031 31.8 5.4 28 154-181 130-157 (439)
66 cd04190 Chitin_synth_C C-termi 22.0 2E+02 0.0044 27.7 5.8 29 153-181 71-99 (244)
67 PF10111 Glyco_tranf_2_2: Glyc 21.4 3.8E+02 0.0083 26.5 7.9 98 154-256 87-213 (281)
68 COG3306 Glycosyltransferase in 20.9 3.6E+02 0.0077 27.0 7.4 21 207-227 155-175 (255)
69 PLN03180 reversibly glycosylat 20.7 1.2E+02 0.0027 31.7 4.1 64 155-218 93-167 (346)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-108 Score=858.65 Aligned_cols=411 Identities=36% Similarity=0.658 Sum_probs=388.3
Q ss_pred CCCCCCCeEEEEEEcCccChHHHHHHHHHhhhhcCCeEEEeeecCCCCCCCCCCCCCCCeEeccCCcccccccccchhHH
Q 037329 59 TSPTNINHIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFLPWPPSSPPFRVNENITRLKSYEKIKNSFQ 138 (474)
Q Consensus 59 ~~~~~~s~IvfgI~TS~~~~~~R~~aIk~TW~~~~~r~~vFld~~~~~~~~~~~~~lp~v~is~d~s~f~~~~k~g~~~a 138 (474)
..+|+++||+|||+++++.|++|++||+.||+++.+|++||+|+.+.+ .+++..+|++.|++++|+|.|+++.|++++
T Consensus 116 ~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~--~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa 193 (537)
T PLN03153 116 EAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP--EEGDDSLPPIMVSEDTSRFRYTNPTGHPSG 193 (537)
T ss_pred CCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCC--CCCcCCCCCEEeCCCcccccccCCCCcHHH
Confidence 467999999999999999999999999999999999999999998763 356788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHH
Q 037329 139 VRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPL 218 (474)
Q Consensus 139 ~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~l 218 (474)
+|+++++.|+++.+.|++||||++||||||+++||+++|++|||++++|||..++...++..|+|.||+|||||+||++|
T Consensus 194 ~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPL 273 (537)
T PLN03153 194 LRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPL 273 (537)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHH
Confidence 99999999999988999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCCcccCCCCcccccccCCCCceeecccCCCCCCCCCCcc
Q 037329 219 VEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHSDISGLLSALPQIPVLSLHHLDVINPIFPSMS 298 (474)
Q Consensus 219 l~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfhQ~d~~gd~~g~~~s~~~~P~lSlHH~~~~~~~fp~~~ 298 (474)
|++|.+.+++|..+|...++||.+||+||+++||++|+++||||+|+.||+.|||++||.+|+|||||++.++|+||+|+
T Consensus 274 ae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~fP~~~ 353 (537)
T PLN03153 274 AEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPFYPGLS 353 (537)
T ss_pred HHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccccCCcc
Confidence 99999999999998887889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccchhhhhhhccccceEEEEEEeceEEEEEcCCCCcccccCccccccccccCCCCCCccccCCCC
Q 037329 299 RSKSINHLMKAAKLDHSRLLQQTICYDMQRNWSFSISWGYTTHIYESILPRNFVVKPLETFRPWRRSDRQPLYMFNTRGI 378 (474)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~~tf~~w~~~~~~~~~~f~~r~~ 378 (474)
|.+|++++++||++|++++|||+||||+.++|+|+||||||||+|++++.+.||++|++||.+|++.+++.+|+||||++
T Consensus 354 ~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~fntr~~ 433 (537)
T PLN03153 354 SLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDLDTRDP 433 (537)
T ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCCCCcEEEEeeeeeecCCCcEEEEEEecCCCC----CCCCCCCCCCCCCCccEEEEeCCCccc-c-ccCcccccccc
Q 037329 379 TRNSCEAPHVFFFHSAENSTENKIATTYLRALPRN----LPPCSNSGNISADSINTIHVFSPATEH-K-RMGKTECCDVE 452 (474)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~~~~v~~~Y~r~~~~~----~~~c~~~~~~~~~~~~~i~v~~~~~~~-~-~~~rr~cc~~~ 452 (474)
+++||++|++|||+++..+ +++|+|+|+|+..++ .+.|.+ .++++.+|++|+|++++++. | +||||+||+|+
T Consensus 434 ~r~~c~~p~~f~l~~~~~~-~~~~~~~Y~r~~~~~~~~~~~~C~~-~~~~~~~v~~i~V~~~~~~~~w~~aprr~CC~v~ 511 (537)
T PLN03153 434 IKSVCKKPILFFLKDVGRE-GNATLGTYSRARMKDDLKRKVFCFP-RSLPLPYVEKIQVLGFPLSKNWHLVPRRLCCRLN 511 (537)
T ss_pred CCCcccCceEEEeeecccc-CCeeEEEEEEecccccccccccccc-cCCChhhceEEEEecCCCccchhhcchhhheecc
Confidence 9999999999999999764 889999999996443 467888 56788899999999876665 4 89999999999
Q ss_pred ccCCCceEEEEeccccCCcccC
Q 037329 453 KMRDVNVTDIKLRKCTKDEIIS 474 (474)
Q Consensus 453 ~~~~~~~~~~~~~~c~~~e~~~ 474 (474)
++. +++|+|+||.|++||+++
T Consensus 512 ~~~-~~~~~i~v~~C~~~e~~~ 532 (537)
T PLN03153 512 QTS-DELLTLTVGQCEKGSLGS 532 (537)
T ss_pred CCC-CCcEEEEEEeccCCcccc
Confidence 887 789999999999999864
No 2
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=100.00 E-value=1.1e-76 Score=571.96 Aligned_cols=252 Identities=44% Similarity=0.851 Sum_probs=240.7
Q ss_pred CCccccccccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCCcccCCCCcccccccC
Q 037329 197 SNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHSDISGLLSAL 276 (474)
Q Consensus 197 q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfhQ~d~~gd~~g~~~s~ 276 (474)
||..|+|.||+|||||+||++|+++|++++|+|+++|+..+++|.+|..||+++||++|.++||||+|++||+.|||++|
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~ 80 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH 80 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecccCCCCCCCCCCcchHHHHHHHHHHHhhcccchhhhhhhccccceEEEEEEeceEEEEEcCCCCcccccCcc
Q 037329 277 PQIPVLSLHHLDVINPIFPSMSRSKSINHLMKAAKLDHSRLLQQTICYDMQRNWSFSISWGYTTHIYESILPRNFVVKPL 356 (474)
Q Consensus 277 ~~~P~lSlHH~~~~~~~fp~~~~~~~~~~l~~~~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~ 356 (474)
+..|++|||||+.++|+||+|+|.+||++|++||++|++++|||+||||++++|++|||||||||+|++.++++||+.++
T Consensus 81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~ 160 (255)
T PF04646_consen 81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE 160 (255)
T ss_pred CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCccccCCCCCCCCCCCcEEEEeeeeeec-CCCcEEEEEEecCCCCCCCCCCCCCCCCCCccEEEEeC
Q 037329 357 ETFRPWRRSDRQPLYMFNTRGITRNSCEAPHVFFFHSAENS-TENKIATTYLRALPRNLPPCSNSGNISADSINTIHVFS 435 (474)
Q Consensus 357 ~tf~~w~~~~~~~~~~f~~r~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~Y~r~~~~~~~~c~~~~~~~~~~~~~i~v~~ 435 (474)
+||.+|++.++.++|+|||||++++||+||.+|||++|..+ ++|+++++|+|...++ ++|.+....++.+|++|+|++
T Consensus 161 rTF~~W~~~~~~~~f~FnTRp~~~dpC~rP~vffL~~v~~~~~~~~t~s~Y~r~~~~~-~~C~~~~~~p~~~v~~I~V~~ 239 (255)
T PF04646_consen 161 RTFRTWYRRSDRTPFAFNTRPVPRDPCQRPTVFFLSSVRSDSGSNQTVSSYVRHRVRN-PNCCWPMADPLSKVQRIRVLK 239 (255)
T ss_pred HHhhcccCcCcCCceeccCCCCcCCCCCCCeEEEEeeeeecCCCCeEEEEEEecccCC-CCCCCCCCCchhhceEEEEEc
Confidence 99999999888999999999999999999999999999986 6889999999998765 899997777789999999999
Q ss_pred CCcc-cc-ccCccccc
Q 037329 436 PATE-HK-RMGKTECC 449 (474)
Q Consensus 436 ~~~~-~~-~~~rr~cc 449 (474)
++.+ .| +|||||||
T Consensus 240 k~~~~~w~~aPRR~CC 255 (255)
T PF04646_consen 240 KPDPDLWKKAPRRQCC 255 (255)
T ss_pred ccCCcccccCccccCC
Confidence 4433 34 99999999
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-44 Score=370.92 Aligned_cols=267 Identities=31% Similarity=0.468 Sum_probs=218.9
Q ss_pred eEEEEEEcCccChHHHHHHHHHhhhhcCCeEEEeeecCCCCCCCCCCCCCCCeEeccCCcccccccccchhHHHHHHHHH
Q 037329 66 HIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFLPWPPSSPPFRVNENITRLKSYEKIKNSFQVRVFRTI 145 (474)
Q Consensus 66 ~IvfgI~TS~~~~~~R~~aIk~TW~~~~~r~~vFld~~~~~~~~~~~~~lp~v~is~d~s~f~~~~k~g~~~a~R~~~~v 145 (474)
.|++-|.|+..++.+|++.+++||+++|+++.+|... .. +.+..+|.|..+.. .|.+...|..+.+
T Consensus 92 ~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s----~~~~~f~~v~~~~~---------~g~~~~~~ktr~~ 157 (364)
T KOG2246|consen 92 RVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LS----KDDSRFPTVYYNLP---------DGYRSLWRKTRIA 157 (364)
T ss_pred eEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CC----CCCCcCceeeccCC---------cchHHHHHHHHHH
Confidence 4555566777777778888888888888776666632 11 01134566644444 4445555555555
Q ss_pred HHHHH-hCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHH-
Q 037329 146 LETFR-EGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALA- 223 (474)
Q Consensus 146 ~e~~~-~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~- 223 (474)
.+.+. +..+++|||+++||||||++|||+++|.+|||++|+|||..++.+.++. + .+||||+++|+++++.|+
T Consensus 158 ~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-y----~~g~ag~~ls~aa~~~la~ 232 (364)
T KOG2246|consen 158 FKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-Y----SSGGAGYVLSFAALRRLAE 232 (364)
T ss_pred HHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-c----ccCCCCcceeHHHHHHHHH
Confidence 55553 6789999999999999999999999999999999999999999888875 3 456666666666555554
Q ss_pred ---HHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCCcccCCCCcccccccCCCCceeecccCCCCCCCCCCcchH
Q 037329 224 ---AKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQIDLHSDISGLLSALPQIPVLSLHHLDVINPIFPSMSRS 300 (474)
Q Consensus 224 ---~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfhQ~d~~gd~~g~~~s~~~~P~lSlHH~~~~~~~fp~~~~~ 300 (474)
+..+.|+.++.. +++|.+||+||+++||+++++ ||.|.+|+..|+..+|+..|++++||+..+ +||++++.
T Consensus 233 ~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~~~~--~fp~~~~~ 306 (364)
T KOG2246|consen 233 RLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHLWLV--YFPNQNGS 306 (364)
T ss_pred HHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCccccccceee--ecCCCchh
Confidence 456789988766 899999999999999999998 999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhhcccchhhhhhhccccceEEEEEEeceEEEEEcCCCCcccccCccccccccc
Q 037329 301 KSINHLMKAAKLDHSRLLQQTICYDMQRNWSFSISWGYTTHIYESILPRNFVVKPLETFRPWR 363 (474)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~~tf~~w~ 363 (474)
.+..+++.+++.++. .+|+.+|||..+.|+++++|||.+++++.... .+.+||.+|+
T Consensus 307 ~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~ 363 (364)
T KOG2246|consen 307 GCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWN 363 (364)
T ss_pred hHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCC
Confidence 999999999999988 99999999999999999999999999999877 6789999995
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.97 E-value=1.4e-32 Score=271.36 Aligned_cols=211 Identities=26% Similarity=0.400 Sum_probs=119.2
Q ss_pred CCCCCeEEEEEEcCccChHHHHHHHHHhhhhcCCeEEE-eeecCCCCCCCCCCCCCCCe---EeccCCcccccccccchh
Q 037329 61 PTNINHIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYL-FLERFPSREFLPWPPSSPPF---RVNENITRLKSYEKIKNS 136 (474)
Q Consensus 61 ~~~~s~IvfgI~TS~~~~~~R~~aIk~TW~~~~~r~~v-Fld~~~~~~~~~~~~~lp~v---~is~d~s~f~~~~k~g~~ 136 (474)
++++++|+|+|+|+.+.|.+|+.+|++||+++|.+..+ |+|.++. .+|.. .+...+.....+.+ .
T Consensus 2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~--------~l~~~~~~~l~~~~~~~~~~~~---~ 70 (252)
T PF02434_consen 2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDP--------SLPTVTGVHLVNPNCDAGHCRK---T 70 (252)
T ss_dssp ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--H--------HHHHHHGGGEEE--------------
T ss_pred CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCcccc--------ccccccccccccCCCcchhhHH---H
Confidence 58899999999999999999999999999999987555 7886643 23332 11111111122222 0
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCc----------ccccccc
Q 037329 137 FQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNF----------HASFNMA 206 (474)
Q Consensus 137 ~a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~----------~~~y~~a 206 (474)
...++.. ..+.+ ..++++||+++||||||+++||+++|++|||++|+|||.++....... ..+|.|+
T Consensus 71 ~~~~~~~-~y~~~--~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~ 147 (252)
T PF02434_consen 71 LSCKMAY-EYDHF--LNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFA 147 (252)
T ss_dssp --HHHHH-HHHHH--HHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE
T ss_pred HHHHHHH-HHHhh--hcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEee
Confidence 1112221 11222 246889999999999999999999999999999999999987532211 1246799
Q ss_pred ccCcceeecHHHHHHHHHHhhHh--hhhcc-CCChhhHHHHHHHHH-cCCceEecCCCCcccCC-CCcc-cccccCCCCc
Q 037329 207 FGGAGYALSYPLVEALAAKFDKC--VEKYQ-NLYASDLMLYSCLAD-LGVTLTLEKGFHQIDLH-SDIS-GLLSALPQIP 280 (474)
Q Consensus 207 ~GGaG~vLSr~ll~~L~~~~d~C--~~~~~-~~~~~D~~Lg~Cl~~-lGV~lt~~~gfhQ~d~~-gd~~-g~~~s~~~~P 280 (474)
+|||||+||++||++|.+....| ..... ...++|+.||.|++. +||++++.+.|||.-.. .+.. ..+.. +.
T Consensus 148 ~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~---q~ 224 (252)
T PF02434_consen 148 TGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR---QV 224 (252)
T ss_dssp -GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG----S
T ss_pred CCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc---CC
Confidence 99999999999999998876544 32211 235899999999999 99999999999996321 1222 22222 34
Q ss_pred eeecccCC
Q 037329 281 VLSLHHLD 288 (474)
Q Consensus 281 ~lSlHH~~ 288 (474)
.||+|+..
T Consensus 225 ~~s~~~~~ 232 (252)
T PF02434_consen 225 PISYHKFE 232 (252)
T ss_dssp EEE-EEET
T ss_pred CeecCCCc
Confidence 69999996
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4e-17 Score=168.60 Aligned_cols=208 Identities=22% Similarity=0.228 Sum_probs=146.4
Q ss_pred CCeEEEEEEcCccChHHHHHHHHHhhhhcCC-----eEEEeeecCCCCCC---CCC---CCCC-CCeEeccCCccccccc
Q 037329 64 INHIVFGIAGTVNGWKYRRAYVEAWWRPNVT-----RGYLFLERFPSREF---LPW---PPSS-PPFRVNENITRLKSYE 131 (474)
Q Consensus 64 ~s~IvfgI~TS~~~~~~R~~aIk~TW~~~~~-----r~~vFld~~~~~~~---~~~---~~~l-p~v~is~d~s~f~~~~ 131 (474)
...|+++|.|.. .+-.||.+||+||+.... -..+|+.+.+..+. ... .... -.+..+-.+++++++.
T Consensus 94 ~~~lLl~V~S~~-~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty~nltl 172 (349)
T KOG2287|consen 94 PPELLLLVKSAP-DNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTYFNLTL 172 (349)
T ss_pred CceEEEEEecCC-CCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccchhchHH
Confidence 357899986665 555699999999987652 35667776544210 000 0111 2344455667888877
Q ss_pred ccchhHHHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcC-CCCCceEEEeccCCCCC----Cccc-----
Q 037329 132 KIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKY-DHTQYLYIGTNSECVSS----NFHA----- 201 (474)
Q Consensus 132 k~g~~~a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~y-D~~~p~YiG~~se~~~q----~~~~----- 201 (474)
| +. ++.++....+|++++++++|||+||++++|+++|.+. ++.+.+|.|........ ...|
T Consensus 173 K--------tl-~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 173 K--------TL-AILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES 243 (349)
T ss_pred H--------HH-HHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH
Confidence 6 44 3345555679999999999999999999999999999 99999999988764111 0111
Q ss_pred -----cccccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHc-CCceEecCCCCcccCCCCccccccc
Q 037329 202 -----SFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADL-GVTLTLEKGFHQIDLHSDISGLLSA 275 (474)
Q Consensus 202 -----~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~l-GV~lt~~~gfhQ~d~~gd~~g~~~s 275 (474)
.|+...+|+||++|++++++|..... +......||+.+|.|+++. ||.+.+.+++......-+.+.+
T Consensus 244 ~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~----~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~--- 316 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPGYVISGDAARRLLKASK----HLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCY--- 316 (349)
T ss_pred HCCCCCCCCcCCCceeEecHHHHHHHHHHhc----CCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcc---
Confidence 26666789999999999999998432 2334557999999999996 9999988885543322233322
Q ss_pred CCCCceeecccCCCCC
Q 037329 276 LPQIPVLSLHHLDVIN 291 (474)
Q Consensus 276 ~~~~P~lSlHH~~~~~ 291 (474)
.-+++.|..++.+
T Consensus 317 ---~~~~~~H~~~p~e 329 (349)
T KOG2287|consen 317 ---RDLLAVHRLSPNE 329 (349)
T ss_pred ---cceEEEecCCHHH
Confidence 3479999998765
No 6
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.67 E-value=7.5e-16 Score=159.41 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=123.8
Q ss_pred eEEEEEEcCccChHHHHHHHHHhhhhcC----------CeEEEeeecCCCCC---C----CCCCCCCCC-eEeccCCccc
Q 037329 66 HIVFGIAGTVNGWKYRRAYVEAWWRPNV----------TRGYLFLERFPSRE---F----LPWPPSSPP-FRVNENITRL 127 (474)
Q Consensus 66 ~IvfgI~TS~~~~~~R~~aIk~TW~~~~----------~r~~vFld~~~~~~---~----~~~~~~lp~-v~is~d~s~f 127 (474)
.+++||.|+. .+.+||.+||+||++.. ....+|+-+..... . ......... +.++-.+++.
T Consensus 140 ~LvIgI~Sap-~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~ 218 (408)
T PLN03193 140 LMVVGINTAF-SSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYL 218 (408)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccc
Confidence 5667776655 56779999999998742 12456776654210 0 000011122 3334455667
Q ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC---C------
Q 037329 128 KSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS---N------ 198 (474)
Q Consensus 128 ~~~~k~g~~~a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q---~------ 198 (474)
+++.| ++.++..+.+ ..++++|+++|||+||++++|+.+|++......+|+|........ +
T Consensus 219 NLT~K--------Tl~~f~wA~~--~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~ep 288 (408)
T PLN03193 219 ELSAK--------TKTYFATAVA--MWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEP 288 (408)
T ss_pred cchHH--------HHHHHHHHHH--cCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCc
Confidence 77665 4444444443 468999999999999999999999998776667999997542100 0
Q ss_pred ccc-------cccccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCCc
Q 037329 199 FHA-------SFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQ 262 (474)
Q Consensus 199 ~~~-------~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfhQ 262 (474)
..| .|+....|+|||||+.+++.|+..... ......||+.||.||..++|...+.+.|+-
T Consensus 289 e~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~----L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc 355 (408)
T PLN03193 289 EYWKFGENGNKYFRHATGQLYAISKDLASYISINQHV----LHKYANEDVSLGSWFIGLDVEHIDDRRLCC 355 (408)
T ss_pred ccccccCccccCCCCCCcceEEehHHHHHHHHhChhh----hcccCcchhhhhhHhccCCceeeecccccC
Confidence 111 244456789999999999999865432 123347999999999999999999999984
No 7
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.64 E-value=4.3e-15 Score=161.85 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=119.4
Q ss_pred CeEEEEEEcCccChHHHHHHHHHhhhhcC-----CeEEEeeecCCCCCC-C----CCCCCCCC-eEeccCCccccccccc
Q 037329 65 NHIVFGIAGTVNGWKYRRAYVEAWWRPNV-----TRGYLFLERFPSREF-L----PWPPSSPP-FRVNENITRLKSYEKI 133 (474)
Q Consensus 65 s~IvfgI~TS~~~~~~R~~aIk~TW~~~~-----~r~~vFld~~~~~~~-~----~~~~~lp~-v~is~d~s~f~~~~k~ 133 (474)
-.++++|.|+ ..+-+||.+||+||++.. ....+|+.+.+..+. + ........ +..+-.+++.+++.|
T Consensus 385 ~~LlI~V~Sa-p~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlK- 462 (636)
T PLN03133 385 LDLFIGVFST-ANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWK- 462 (636)
T ss_pred eEEEEEEeCC-cccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHH-
Confidence 3677778665 566779999999999742 123556665543210 0 00011122 233334566776665
Q ss_pred chhHHHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC----Cccc--------
Q 037329 134 KNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS----NFHA-------- 201 (474)
Q Consensus 134 g~~~a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q----~~~~-------- 201 (474)
++.++ .+ ...++++++++++|||+||++++|+++|.+.+..+.+|+|........ ...|
T Consensus 463 -------tl~~~-~w-a~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp 533 (636)
T PLN03133 463 -------TLAIC-IF-GTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWP 533 (636)
T ss_pred -------HHHHH-HH-HHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCC
Confidence 44333 33 335899999999999999999999999998888888999987653211 1111
Q ss_pred --cccccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHH---cCCceEec
Q 037329 202 --SFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLAD---LGVTLTLE 257 (474)
Q Consensus 202 --~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~---lGV~lt~~ 257 (474)
.|+.+.+|+||+||+.+++.|+...... ..+.+..||+.+|.|+++ +|+++.+.
T Consensus 534 ~~~YPpYasG~gYVlS~Dla~~L~~~s~s~--~l~~f~lEDVyvGi~l~~l~k~gl~v~~~ 592 (636)
T PLN03133 534 EETYPPWAHGPGYVVSRDIAKEVYKRHKEG--RLKMFKLEDVAMGIWIAEMKKEGLEVKYE 592 (636)
T ss_pred CCCCCCCCCcCEEEEcHHHHHHHHHhhhhc--ccCcCChhhHhHHHHHHHhcccCCCceee
Confidence 2666678999999999999998764321 123456799999999975 46666544
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.61 E-value=4.5e-15 Score=140.81 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred HHHHHHHHhhhhcC-----CeEEEeeecCCCCC---CCC----CCCCCCC-eEeccCCcccccccccchhHHHHHHHHHH
Q 037329 80 YRRAYVEAWWRPNV-----TRGYLFLERFPSRE---FLP----WPPSSPP-FRVNENITRLKSYEKIKNSFQVRVFRTIL 146 (474)
Q Consensus 80 ~R~~aIk~TW~~~~-----~r~~vFld~~~~~~---~~~----~~~~lp~-v~is~d~s~f~~~~k~g~~~a~R~~~~v~ 146 (474)
+||++||+||++.. .-.++|+-+.+... .+. ....... +.++..+++.+++.| ++.++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K--------~~~~~- 71 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLK--------TLAGL- 71 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHH--------HHHHH-
Confidence 48999999999754 22467776665411 100 1111122 334445566666554 55444
Q ss_pred HHHHhCCCCccEEEEEcCCccccHHHHHHHHhcC--CCCCceEEEeccCCCCC----Cccc----------cccccccCc
Q 037329 147 ETFREGDEDVRWYVMADDDTILFVDNLVEVLAKY--DHTQYLYIGTNSECVSS----NFHA----------SFNMAFGGA 210 (474)
Q Consensus 147 e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~p~YiG~~se~~~q----~~~~----------~y~~a~GGa 210 (474)
+|...+++++++++++|||+||++++|..+|.+. ++.+..+.|........ ...| .|+-.+.|+
T Consensus 72 ~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~ 151 (195)
T PF01762_consen 72 KWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGG 151 (195)
T ss_pred HHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCC
Confidence 4444569999999999999999999999999987 77777787877653111 1111 144445788
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
||+||+.+++.|..... ..+....+|+.+|.|+.++||++++.|
T Consensus 152 ~yvls~~~v~~i~~~~~----~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 152 GYVLSSDVVKRIYKASS----HTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred eEEecHHHHHHHHHHhh----cCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 99999999999998643 234566899999999999999988754
No 9
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.2e-11 Score=129.13 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=121.8
Q ss_pred CeEEEEEEcCccChHHHHHHHHHhhhhcCCeEEEeeecCCCCCCCCCCCCCCCeEeccCCcccccccccchhHHHHHHHH
Q 037329 65 NHIVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFLPWPPSSPPFRVNENITRLKSYEKIKNSFQVRVFRT 144 (474)
Q Consensus 65 s~IvfgI~TS~~~~~~R~~aIk~TW~~~~~r~~vFld~~~~~~~~~~~~~lp~v~is~d~s~f~~~~k~g~~~a~R~~~~ 144 (474)
.+++.||.|.. +-.-+|+.|-+++.++..+|.+...-+. ....+..+ +. .+ .+-+.+.+..
T Consensus 26 Erl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i~~---~~a~~~~v--s~----~d------~r~~~~~s~v 86 (681)
T KOG3708|consen 26 ERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRIDN---DLAQLTNV--SP----YD------LRGQKTHSMV 86 (681)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccccc---cHhhcccc--Cc----cc------cCccccHHHH
Confidence 46777787722 5567899999999999999998754211 00111111 11 11 1123445656
Q ss_pred HHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHH
Q 037329 145 ILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAA 224 (474)
Q Consensus 145 v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~ 224 (474)
+..++.+...++|||+++.|+|||+...|++++.+.+.++++|+|.-.+... .-|.+|.|+.||++++.+|.+
T Consensus 87 l~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-------~rC~l~~G~LLS~s~l~~lrn 159 (681)
T KOG3708|consen 87 LGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-------GRCRLDTGMLLSQSLLHALRN 159 (681)
T ss_pred HHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-------CccccccceeecHHHHHHHHh
Confidence 6666777789999999999999999999999999999999999995544211 138999999999999999999
Q ss_pred HhhHhhhhccCCChhhHHHHHHHHH-cCCceEe
Q 037329 225 KFDKCVEKYQNLYASDLMLYSCLAD-LGVTLTL 256 (474)
Q Consensus 225 ~~d~C~~~~~~~~~~D~~Lg~Cl~~-lGV~lt~ 256 (474)
+.+.|.... ..--.|..||+|+.. .||.++.
T Consensus 160 nle~C~~~~-lsad~d~~lgrCi~~At~v~C~~ 191 (681)
T KOG3708|consen 160 NLEGCRNDI-LSADPDEWLGRCIQDATGVGCKP 191 (681)
T ss_pred hHHHhhccc-ccCCcHHHHHHHHHHhhcCCccc
Confidence 999997532 223467899999987 6988764
No 10
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.17 E-value=3.4e-10 Score=116.28 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHH
Q 037329 138 QVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYP 217 (474)
Q Consensus 138 a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ 217 (474)
+.|++..+..+++ .+|++++++++|||+|+++++++..|.. .|++.+|+|.......... .+++...+|.||+||+.
T Consensus 183 T~KT~l~~~wA~~-~cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~R-d~~PpY~~G~gYvLSrD 259 (382)
T PTZ00210 183 SRKTYLWLRFALH-MFPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIWR-RNQLTYVNGYCITLSRD 259 (382)
T ss_pred hHHHHHHHHHHHH-hCCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCcccc-CCCCCccccceeeccHH
Confidence 4567755554444 5899999999999999999999999954 5677899999876432111 12234467899999999
Q ss_pred HHHHHHHHhhHh-h----------hhc--cCCChhhHHHHHHHHH-cC-Cce-Ee-cCCCCcccCCCCcccccccCCC-C
Q 037329 218 LVEALAAKFDKC-V----------EKY--QNLYASDLMLYSCLAD-LG-VTL-TL-EKGFHQIDLHSDISGLLSALPQ-I 279 (474)
Q Consensus 218 ll~~L~~~~d~C-~----------~~~--~~~~~~D~~Lg~Cl~~-lG-V~l-t~-~~gfhQ~d~~gd~~g~~~s~~~-~ 279 (474)
+++.|+....-. + +.| .....||+++|..|.. ++ -++ .. +..-|-+|.++... . ++. .
T Consensus 260 VA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~~-~---~~v~~ 335 (382)
T PTZ00210 260 TAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKFGV-R---KSVRN 335 (382)
T ss_pred HHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCCCC-c---ccccc
Confidence 999998762210 0 111 1345799999999965 43 222 22 22222224432111 1 112 2
Q ss_pred ceeecccCCCCC
Q 037329 280 PVLSLHHLDVIN 291 (474)
Q Consensus 280 P~lSlHH~~~~~ 291 (474)
-.|-+||++..|
T Consensus 336 ~sVvvHhike~d 347 (382)
T PTZ00210 336 MSVVIHHIQEAD 347 (382)
T ss_pred ceEEEEecCHHH
Confidence 368999999875
No 11
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.13 E-value=3.3e-10 Score=110.32 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=117.4
Q ss_pred eEEEEEEcCccChHHHHHHHHHhhhhcC--------Ce--EEEeeecCCCCC------CCCCCCCCCC-eEec-cCCccc
Q 037329 66 HIVFGIAGTVNGWKYRRAYVEAWWRPNV--------TR--GYLFLERFPSRE------FLPWPPSSPP-FRVN-ENITRL 127 (474)
Q Consensus 66 ~IvfgI~TS~~~~~~R~~aIk~TW~~~~--------~r--~~vFld~~~~~~------~~~~~~~lp~-v~is-~d~s~f 127 (474)
-.++||.|+... ..|+..++.||-+.. .+ ...|+-+..... ++..+...-. +.++ ..+++.
T Consensus 12 l~vigI~T~f~s-~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~Y~ 90 (274)
T KOG2288|consen 12 LLVIGINTAFSS-RKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEAYE 90 (274)
T ss_pred EEEEEeecccch-hhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHHHH
Confidence 456778887755 458889999997762 12 344665542110 0000011111 2233 223333
Q ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCC----------CCC
Q 037329 128 KSYEKIKNSFQVRVFRTILETFREGDEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSEC----------VSS 197 (474)
Q Consensus 128 ~~~~k~g~~~a~R~~~~v~e~~~~~~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~----------~~q 197 (474)
+++ .++..++..++.+ =++++|+++|||+|++++.|...|+++-....+|||..... +++
T Consensus 91 ~Ls--------~Kt~~~f~~A~~~--~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Ep 160 (274)
T KOG2288|consen 91 ELS--------AKTKAFFSAAVAH--WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEP 160 (274)
T ss_pred HHH--------HHHHHHHHHHHHh--ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccCh
Confidence 333 3455556566653 58999999999999999999999999977789999997543 111
Q ss_pred Cccc-----cccccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCCc
Q 037329 198 NFHA-----SFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFHQ 262 (474)
Q Consensus 198 ~~~~-----~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfhQ 262 (474)
...| -|++|. |+||+||+.|+.-|.-..+- +..| -.+|+.||..|.-+.|.-.+.+.++.
T Consensus 161 eWkfg~~g~YfrhA~-G~~YvlS~dLa~yi~in~~l-L~~y---~nEDVSlGaW~~gldV~h~dd~rlC~ 225 (274)
T KOG2288|consen 161 EWKFGDNGNYFRHAT-GGGYVLSKDLATYISINRQL-LHKY---ANEDVSLGAWMIGLDVEHVDDPRLCC 225 (274)
T ss_pred hhhcCcccccchhcc-CceEEeeHHHHHHHHHhHHH-HHhh---ccCCcccceeeeeeeeeEecCCcccc
Confidence 1111 135676 56999999999999876543 3322 36999999999888887777776663
No 12
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.51 E-value=0.33 Score=45.49 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhcCC-CCCc----eEEEeccCCCCC-------Cc-------cccccccccCccee
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAKYD-HTQY----LYIGTNSECVSS-------NF-------HASFNMAFGGAGYA 213 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p----~YiG~~se~~~q-------~~-------~~~y~~a~GGaG~v 213 (474)
....+++++.|+|+.+..+-|.++++.+. |+.. +|.+.+..+... +. .-+.+++. |+.++
T Consensus 29 ~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-G~~m~ 107 (175)
T PF13506_consen 29 GAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAW-GGSMA 107 (175)
T ss_pred hCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCcee-cceee
Confidence 37899999999999999988888887663 3332 333333222110 00 00234554 56899
Q ss_pred ecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 214 LSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 214 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
+.+.+++++-... .......||..||+.+.+.|.+....+
T Consensus 108 ~rr~~L~~~GG~~-----~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 108 FRREALEEIGGFE-----ALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred eEHHHHHHcccHH-----HHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 9999999874211 111345899999999999998877655
No 13
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.95 E-value=0.25 Score=43.45 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=59.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCC-CceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHhhHhhhhc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHT-QYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKY 233 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~-~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~ 233 (474)
+.+|+++.|||.++..+.|.+++..+... +-..+|.. ..|+++++++.+++++....+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~---- 134 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF---- 134 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh----
Confidence 78999999999999988888887754322 22223322 46789999999999875322211
Q ss_pred cCCChhhHHHHHHHHHcCCceEecCC
Q 037329 234 QNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 234 ~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
..+++|..+...+.+.|.++...|.
T Consensus 135 -~~~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 135 -FLYYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred -hccccHHHHHHHHHHcCCeEEEccc
Confidence 1267899999888888877665443
No 14
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=92.84 E-value=0.12 Score=54.34 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCCCeEEEE-EEcCccChHHHHHHHHHhhhhcCCeEEEeeecCCCCCCCCC--CCCCCCeEeccCCcccccc
Q 037329 59 TSPTNINHIVFG-IAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFLPW--PPSSPPFRVNENITRLKSY 130 (474)
Q Consensus 59 ~~~~~~s~Ivfg-I~TS~~~~~~R~~aIk~TW~~~~~r~~vFld~~~~~~~~~~--~~~lp~v~is~d~s~f~~~ 130 (474)
...+++.|++|| ++++...|..|...|.-||.+..+++.++++.....-.... ...+|.+ ++.++++|+.-
T Consensus 66 ~~~~~i~~~~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s~~~~~f~~v 139 (364)
T KOG2246|consen 66 SLTTDILHLVFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LSKDDSRFPTV 139 (364)
T ss_pred ccccchhhhccCCccccchhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CCCCCCcCcee
Confidence 357899999999 88999999999999999999888889999986432100111 1345777 88888777643
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.94 E-value=0.52 Score=43.93 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHhhHhhhhc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKY 233 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~ 233 (474)
...+|+++.|+|+.+..+-|.+++..+...+--.+|.. ...|++.++.+.+++++... +. .
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~--------------~~~g~~~~~r~~~~~~~ggf-~~----~ 145 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL--------------CAFGKSMALRREVLDAIGGF-EA----F 145 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee--------------cccCceeeeEHHHHHhccCh-HH----H
Confidence 46899999999999988888888876532222222222 24578999999999987543 21 1
Q ss_pred cCCChhhHHHHHHHHHcCCceEecCC
Q 037329 234 QNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 234 ~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
....++|..++.-+.+.|......+.
T Consensus 146 ~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 146 ADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 12346999999999888876654433
No 16
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.94 E-value=1.7 Score=41.13 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=57.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHH---hcCCCCCc-eEEEeccCCCCC-----Cc---c------------ccccccccC
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVL---AKYDHTQY-LYIGTNSECVSS-----NF---H------------ASFNMAFGG 209 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L---~~yD~~~p-~YiG~~se~~~q-----~~---~------------~~y~~a~GG 209 (474)
.+++|+++.|+|+.+..+.|.+++ ........ ..+|........ .. . ..-.....|
T Consensus 74 ~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T cd02526 74 NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLIT 153 (237)
T ss_pred CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeec
Confidence 378999999999999988888875 32222222 222222111000 00 0 000012236
Q ss_pred cceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 210 AGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 210 aG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
+|.++++.+++++...-+. + ...++|..+..-+.+.|..+...|
T Consensus 154 ~~~~~rr~~~~~~ggfd~~----~-~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 154 SGSLISLEALEKVGGFDED----L-FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred cceEEcHHHHHHhCCCCHH----H-cCccchHHHHHHHHHcCCcEEEEc
Confidence 7889999999987643221 1 134689999988888886665433
No 17
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=89.37 E-value=0.35 Score=52.89 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=42.6
Q ss_pred hhHhhhhccCCChhhHHHHHHHHH-cCCceEecCC---CCcccCC-CCcccccccCCCCceeecccCCCCC
Q 037329 226 FDKCVEKYQNLYASDLMLYSCLAD-LGVTLTLEKG---FHQIDLH-SDISGLLSALPQIPVLSLHHLDVIN 291 (474)
Q Consensus 226 ~d~C~~~~~~~~~~D~~Lg~Cl~~-lGV~lt~~~g---fhQ~d~~-gd~~g~~~s~~~~P~lSlHH~~~~~ 291 (474)
++.|.... ....+|+.||+|+.+ +||+++.+.. +|.+... .+..+..+.......+|+|..+...
T Consensus 2 l~~C~~~~-~s~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~ 71 (499)
T PF05679_consen 2 LDWCLKNI-YSNHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPA 71 (499)
T ss_pred hhHHhhhc-CCCCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCHH
Confidence 57898753 234699999999997 8999998752 2222222 2223334333345679999998864
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=89.19 E-value=0.8 Score=43.23 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=53.6
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcC-CCCCceEEEeccCCCCC---------------------CccccccccccCcce
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKY-DHTQYLYIGTNSECVSS---------------------NFHASFNMAFGGAGY 212 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~y-D~~~p~YiG~~se~~~q---------------------~~~~~y~~a~GGaG~ 212 (474)
..+|+++.|||+.+.++-|.++++.+ ++.-...-|.......+ ....+. ....|+++
T Consensus 86 ~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~ 164 (228)
T PF13641_consen 86 RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALGV-AFLSGSGM 164 (228)
T ss_dssp --SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B-----S-B--TEE
T ss_pred CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccce-eeccCcEE
Confidence 48899999999999988888888776 44433333332110000 001121 22357999
Q ss_pred eecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEec
Q 037329 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLE 257 (474)
Q Consensus 213 vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~ 257 (474)
++.+++++++.. ++. ...++|..++.-+.+.|.++...
T Consensus 165 ~~rr~~~~~~g~-fd~------~~~~eD~~l~~r~~~~G~~~~~~ 202 (228)
T PF13641_consen 165 LFRRSALEEVGG-FDP------FILGEDFDLCLRLRAAGWRIVYA 202 (228)
T ss_dssp EEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEE
T ss_pred EEEHHHHHHhCC-CCC------CCcccHHHHHHHHHHCCCcEEEE
Confidence 999999999864 221 23569999999999888777654
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=87.10 E-value=38 Score=35.46 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=58.6
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCC------------------------ccc-cccccc
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSN------------------------FHA-SFNMAF 207 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~------------------------~~~-~y~~a~ 207 (474)
.++.+|+++.|+|+.+..+.|.++++.+.....-.++........+ ... ....+
T Consensus 131 ~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 209 (384)
T TIGR03469 131 APPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAA- 209 (384)
T ss_pred CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceee-
Confidence 3458999999999999988888777655322212222111100000 000 00112
Q ss_pred cCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceE
Q 037329 208 GGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLT 255 (474)
Q Consensus 208 GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt 255 (474)
-|+++++++++.+++-..-+. + ....||..|+.-+++.|-+..
T Consensus 210 ~G~~~lirr~~~~~vGGf~~~----~-~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 210 AGGCILIRREALERIGGIAAI----R-GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred cceEEEEEHHHHHHcCCHHHH----h-hCcccHHHHHHHHHHcCCcEE
Confidence 367899999999998554221 1 235799999999999875444
No 20
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=85.66 E-value=3.2 Score=38.27 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=59.3
Q ss_pred EEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccC----C---CCCCc--------------cccccccccCcceeec
Q 037329 158 WYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSE----C---VSSNF--------------HASFNMAFGGAGYALS 215 (474)
Q Consensus 158 Wfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se----~---~~q~~--------------~~~y~~a~GGaG~vLS 215 (474)
|+++.|+||-+..+-|.+.+..++ |+-...-|.... + ..+.. ..+.....-|+|.+++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r 80 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR 80 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence 899999999999888888877665 222222122111 0 00100 1122234568999999
Q ss_pred HHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 216 YPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 216 r~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
+++++++....+ ....+||..++.=+.+.|-.+...+
T Consensus 81 ~~~l~~vg~~~~------~~~~~ED~~l~~~l~~~G~~~~~~~ 117 (193)
T PF13632_consen 81 REALREVGGFDD------PFSIGEDMDLGFRLRRAGYRIVYVP 117 (193)
T ss_pred HHHHHHhCcccc------cccccchHHHHHHHHHCCCEEEEec
Confidence 999998753211 1346799999988888886665443
No 21
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=85.43 E-value=45 Score=34.69 Aligned_cols=100 Identities=21% Similarity=0.108 Sum_probs=63.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccCCCCCC------------ccc----------cccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSECVSSN------------FHA----------SFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se~~~q~------------~~~----------~y~~a~GGa 210 (474)
.+.+|+++.|+|+.+..+-|.++++.+. ++..+ ++......... ..+ +-.....|+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~-V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 203 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGL-VTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGA 203 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcce-EeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccccCh
Confidence 5789999999999999998988888774 33222 22222111100 000 101123467
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
.+++.+++++++-.... ......||..|+.-+.+.|.+....+.
T Consensus 204 ~~a~RR~~l~~iGGf~~-----~~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 204 TMALRRATLEAIGGLAA-----LAHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hhheeHHHHHHcCChHH-----hcccchHHHHHHHHHHHcCCeEEecch
Confidence 78999999998764321 112347999999999998877665544
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=85.38 E-value=1.8 Score=40.71 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=57.9
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCC-CCceEEEec-cCCCCCC-----------------------ccccccccccC
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDH-TQYLYIGTN-SECVSSN-----------------------FHASFNMAFGG 209 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~-~~p~YiG~~-se~~~q~-----------------------~~~~y~~a~GG 209 (474)
+.+|+++.|+|+++..+-|.++++.+.. .+.-.++.. ....... ..++.. ...|
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 162 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAA-FCCG 162 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc-eecC
Confidence 6899999999999998888888877654 222222221 1100000 001112 2347
Q ss_pred cceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceE
Q 037329 210 AGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLT 255 (474)
Q Consensus 210 aG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt 255 (474)
+|.++++.+++++... +. ...++|..++.=+.+.|..+.
T Consensus 163 ~~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i~ 201 (234)
T cd06421 163 SGAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRSV 201 (234)
T ss_pred ceeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceEE
Confidence 8999999999987532 21 235799999987777776543
No 23
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.96 E-value=3.1 Score=38.45 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHhhHhhhh
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEK 232 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~ 232 (474)
.+.+|+++.|||..+..+.|.++++.++ +.-.++.|..... + + .++|.++.+.+++++.- .+. .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~---~-----~~~~~~~~~~~~~~~g~-~~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP---D---G-----SFVGVLISRRVVEKIGL-PDK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC---C---C-----ceEEEEEeHHHHHHhCC-CCh---h
Confidence 4789999999999999887777777665 3333333333221 1 1 34678999999987742 221 1
Q ss_pred ccCCChhhHHHHHHHHHcCCce
Q 037329 233 YQNLYASDLMLYSCLADLGVTL 254 (474)
Q Consensus 233 ~~~~~~~D~~Lg~Cl~~lGV~l 254 (474)
+ ..+++|..+..=+.+.|...
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE
Confidence 2 24679999998888888666
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=84.11 E-value=2.5 Score=40.65 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=60.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCC--CCceEEEeccCCC--CCC---------------------cccccccccc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDH--TQYLYIGTNSECV--SSN---------------------FHASFNMAFG 208 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~--~~p~YiG~~se~~--~q~---------------------~~~~y~~a~G 208 (474)
...+|+++.|+|+.+..+.|.++++.+.. .+-.++|...... .++ ...+.....+
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLG 162 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 35699999999999998888888876642 2333444332110 000 0011223457
Q ss_pred CcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEec
Q 037329 209 GAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLE 257 (474)
Q Consensus 209 GaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~ 257 (474)
|+++++++.+++++... +. ....+|..++.=+.+.|..+...
T Consensus 163 g~~~~~rr~~~~~vgg~-~~------~~~~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 163 GTSNHFRTDVLRELGGW-DP------FNVTEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred CchHHhhHHHHHHcCCC-Cc------ccchhhHHHHHHHHHCCceEEEe
Confidence 88899999998887542 11 23568998887777767655443
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=82.85 E-value=3.4 Score=39.25 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCC--CCCC-------c----cc----------cccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSEC--VSSN-------F----HA----------SFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~--~~q~-------~----~~----------~y~~a~GGa 210 (474)
.+.+|++++|+|+.+..+-|.+++..+...+--.++..... ...+ . .+ +..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 47899999999999998888886555433332233322110 0000 0 00 101123456
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
+.++.+++++++... +. ....+|..|..-+...|.+...
T Consensus 166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~~ 204 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFVY 204 (232)
T ss_pred hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEEE
Confidence 667888888776422 21 2357999999998877765553
No 26
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=82.82 E-value=4.3 Score=40.06 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=55.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCC--CceEEEeccCCCCCC-------------------c---cccccccccC
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHT--QYLYIGTNSECVSSN-------------------F---HASFNMAFGG 209 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~--~p~YiG~~se~~~q~-------------------~---~~~y~~a~GG 209 (474)
.+.+|+++.|||+.+..+.|.++++.++.. .-..+|......... . .....+ ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSF-LIS 150 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccE-EEc
Confidence 478999999999999977777666654322 223333221100000 0 000011 235
Q ss_pred cceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 210 AGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 210 aG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
+|.++++.+++++-. +++ .+ ..+.+|..+..=+.+.|..+...|
T Consensus 151 sg~li~~~~~~~iG~-fde---~~-fi~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 151 SGCLITREVYQRLGM-MDE---EL-FIDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred CcceeeHHHHHHhCC-ccH---hh-cccchHHHHHHHHHHCCCEEEEeC
Confidence 678999999998754 222 11 134578777555556776555444
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=82.62 E-value=5.2 Score=37.75 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=57.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC--C---------------------ccccccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS--N---------------------FHASFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q--~---------------------~~~~y~~a~GGa 210 (474)
.+.+|++++|+|+.+..+.|.+++..++..+--.+|........ . ..++-.++..|+
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 155 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGR 155 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCc
Confidence 37899999999999999999999988852222222221110000 0 001111233456
Q ss_pred ceeecHHHHHHHHHHhh---HhhhhccCCChhhHHHHHHHHHcCCceE
Q 037329 211 GYALSYPLVEALAAKFD---KCVEKYQNLYASDLMLYSCLADLGVTLT 255 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d---~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt 255 (474)
..++.+.++++...... .+........++|..++.=+.+.|..+.
T Consensus 156 ~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~ 203 (235)
T cd06434 156 TAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTV 203 (235)
T ss_pred HHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEE
Confidence 67777887776532211 1111112345789888887777666554
No 28
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=81.70 E-value=4.8 Score=37.73 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.9
Q ss_pred ccccCcceeecHHHHHHHHHHh
Q 037329 205 MAFGGAGYALSYPLVEALAAKF 226 (474)
Q Consensus 205 ~a~GGaG~vLSr~ll~~L~~~~ 226 (474)
...|.+||+||+.++++|....
T Consensus 168 ~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 168 YPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred CCCcceeeeeCHHHHHHHHHhC
Confidence 4568889999999999998764
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.38 E-value=6.5 Score=36.59 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=56.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccCCCCCC--------------------ccccccccccCcce
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSECVSSN--------------------FHASFNMAFGGAGY 212 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se~~~q~--------------------~~~~y~~a~GGaG~ 212 (474)
...+|++++|+|+.+..+-|.+++..+. +....+.|........+ ..++.++..-|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 4679999999999998877777777553 34455666543220000 01122344457889
Q ss_pred eecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCC
Q 037329 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGV 252 (474)
Q Consensus 213 vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV 252 (474)
++++.+++++-.... . .....+|..+..-+...|-
T Consensus 161 ~~rr~~~~~~ggf~~----~-~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGFEG----N-DHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCCcc----c-cccccCCHHHHHHHHHhCC
Confidence 999999999754311 0 1234577776655544444
No 30
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=79.33 E-value=4.4 Score=37.65 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=41.9
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccC--CCCCCc---------------------cccccccccCcc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSE--CVSSNF---------------------HASFNMAFGGAG 211 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se--~~~q~~---------------------~~~y~~a~GGaG 211 (474)
+.+|+++.|.|+.+.++-|.+++..+...+--.++.... +...+. ..+ ....||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 457999999999999888888665553222222222211 100100 012 24569999
Q ss_pred eeecHHHHHHH
Q 037329 212 YALSYPLVEAL 222 (474)
Q Consensus 212 ~vLSr~ll~~L 222 (474)
.++++.+++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999998
No 31
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=79.16 E-value=17 Score=33.91 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=66.1
Q ss_pred CccEEEEEcCCccccHHHHHHHHhc-CCCCCceEEEeccCCCCCC---ccc-----------------ccccc-ccCcce
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAK-YDHTQYLYIGTNSECVSSN---FHA-----------------SFNMA-FGGAGY 212 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~-yD~~~p~YiG~~se~~~q~---~~~-----------------~y~~a-~GGaG~ 212 (474)
..+|+++.|+|..+.++.|.++++. .+....+.+|......... ..+ +..+. ...+..
T Consensus 82 ~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~ 161 (211)
T cd04188 82 RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCce
Confidence 3499999999999999888888886 4556678888765432110 000 11111 123457
Q ss_pred eecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCC
Q 037329 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261 (474)
Q Consensus 213 vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfh 261 (474)
++++.+++++..... ...+..|..+..-+.+.|.++...|-.+
T Consensus 162 ~~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~~ 204 (211)
T cd04188 162 LFTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVRW 204 (211)
T ss_pred eEcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCcce
Confidence 899999998864321 1245678888888888887777666444
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=77.74 E-value=4.9 Score=42.22 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=62.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcC--CCCCceEEEeccCCC-------CCC--------------ccccccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKY--DHTQYLYIGTNSECV-------SSN--------------FHASFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~p~YiG~~se~~-------~q~--------------~~~~y~~a~GGa 210 (474)
.+.+|+++.|+|+.+..+-|.++++.+ |++--..-|.+.... .+. ..++..+..+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 468999999999999998888888776 443222333221100 000 011222344688
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
+.++.+.+++++... + ....+||..++.-+.+.|.+....|.
T Consensus 213 ~~~~rr~~l~~vgg~-~------~~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 213 ITAFRKSALHEVGYW-S------TDMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred eeeeeHHHHHHhCCC-C------CCcccchHHHHHHHHHcCCeEEeccc
Confidence 889999988886432 1 12357999999988888876665543
No 33
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=77.51 E-value=4 Score=37.42 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=44.3
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC-Cc---------------------cccccccccCc
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS-NF---------------------HASFNMAFGGA 210 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q-~~---------------------~~~y~~a~GGa 210 (474)
..+.+|+++.|.|+.+.++-|.+++..+........|........ +. .++..+..+|+
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLGGT 158 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecCc
Confidence 357999999999999998888888877754444555543211000 00 01222345677
Q ss_pred ceeecHHHHHH
Q 037329 211 GYALSYPLVEA 221 (474)
Q Consensus 211 G~vLSr~ll~~ 221 (474)
|+++++.++++
T Consensus 159 ~~~~rr~~l~~ 169 (183)
T cd06438 159 GMCFPWAVLRQ 169 (183)
T ss_pred hhhhHHHHHHh
Confidence 88888888877
No 34
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=76.86 E-value=9.2 Score=34.38 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHhhHhhhhc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKY 233 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~ 233 (474)
...+|+++.|+|+.+..+-|.++++..++. ....|.......... .....|+++++.+..+.++.. ++.+ +
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~gg-f~~~---~ 148 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKLT----ERGIRGCNMSFWKKDLLAVNG-FDEE---F 148 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccccc----eeEeccceEEEEHHHHHHhCC-CCcc---c
Confidence 457899999999999887788877776433 334454432111111 123457788888888875443 2322 1
Q ss_pred cCCChhhHHHHHHHHHcCCceE
Q 037329 234 QNLYASDLMLYSCLADLGVTLT 255 (474)
Q Consensus 234 ~~~~~~D~~Lg~Cl~~lGV~lt 255 (474)
....++|..++.=+.+.|....
T Consensus 149 ~~~~~eD~~l~~r~~~~g~~~~ 170 (182)
T cd06420 149 TGWGGEDSELVARLLNSGIKFR 170 (182)
T ss_pred ccCCcchHHHHHHHHHcCCcEE
Confidence 1123699999988888885444
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=76.72 E-value=14 Score=34.96 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCc-------cccc---------------cccccCcc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNF-------HASF---------------NMAFGGAG 211 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~-------~~~y---------------~~a~GGaG 211 (474)
.+.+|+++.|+|+.+..+.|.++++.+...+--.++.......... .+.+ .....|++
T Consensus 83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (236)
T cd06435 83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTM 162 (236)
T ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecce
Confidence 3589999999999999888888887765323223332211100000 0000 01234677
Q ss_pred eeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 212 YALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 212 ~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
.++++.+++++-. ++.+ ...+|..++.=+.+.|-.+..
T Consensus 163 ~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~~ 200 (236)
T cd06435 163 CLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGVY 200 (236)
T ss_pred EEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEEE
Confidence 8999999998753 2322 357999999888887766554
No 36
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=74.91 E-value=6.2 Score=36.23 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC--CCCceEEEeccCCCCCCc----------------ccc-ccccccCcceee
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD--HTQYLYIGTNSECVSSNF----------------HAS-FNMAFGGAGYAL 214 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD--~~~p~YiG~~se~~~q~~----------------~~~-y~~a~GGaG~vL 214 (474)
.+.+|+++.|+|.++..+.|.+++..+. ++-.++.|.... ...+. .+. ......|+++++
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLE-FDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMF 157 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEE-ECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhh
Confidence 4689999999999999887777776553 333344333221 00000 000 011234556677
Q ss_pred cHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 215 SYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 215 Sr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
.+.+++++... + ....++|..+...+...|-.+..
T Consensus 158 rr~~~~~~g~~-~------~~~~~eD~~~~~r~~~~g~~~~~ 192 (201)
T cd04195 158 RKSKVLAVGGY-Q------DLPLVEDYALWARMLANGARFAN 192 (201)
T ss_pred hHHHHHHcCCc-C------CCCCchHHHHHHHHHHcCCceec
Confidence 77766664321 1 12467999999988877765544
No 37
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=74.67 E-value=8.9 Score=36.65 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.4
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCC
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQ 184 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~ 184 (474)
..+|++++|+|+++..+-|.++++.+...+
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 349999999999999888888888775333
No 38
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=74.36 E-value=4.8 Score=35.48 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHh
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKF 226 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~ 226 (474)
.+.+|.++.+||..+..+ |.+||++|+.++++|....
T Consensus 81 ~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~vs~~~A~~ll~~~ 117 (128)
T cd06532 81 SNLEYALILEDDAILDPD------------------------------------GTAGYLVSRKGAKKLLAAL 117 (128)
T ss_pred cCCCeEEEEccCcEECCC------------------------------------CceEEEeCHHHHHHHHHhC
Confidence 467899999999998875 6779999999999998764
No 39
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.77 E-value=12 Score=34.69 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=56.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEecc-CCCCCC------------ccccccccccCcceeecHHHHHH
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNS-ECVSSN------------FHASFNMAFGGAGYALSYPLVEA 221 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~s-e~~~q~------------~~~~y~~a~GGaG~vLSr~ll~~ 221 (474)
..+|+++.|+|+.+..+.|.+++........ .+|... ...... ........+++.|+++++.+.++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEE 150 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHH
Confidence 3699999999999998888887766544433 333321 110000 00012334567899999998877
Q ss_pred HHHHhhHhhhhccCCChhhHHHHHHHHHcCCce
Q 037329 222 LAAKFDKCVEKYQNLYASDLMLYSCLADLGVTL 254 (474)
Q Consensus 222 L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~l 254 (474)
+-. +++ ..+.+|..+..=+.+.|...
T Consensus 151 ~G~-fd~------~~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 151 LGG-FPE------LPLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred hCC-CCc------cccccHHHHHHHHHhCCCEE
Confidence 753 222 12678998877677777544
No 40
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=73.49 E-value=11 Score=35.47 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=54.9
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccCCC-C--------------CC--ccc-----cccccccCcc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSECV-S--------------SN--FHA-----SFNMAFGGAG 211 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se~~-~--------------q~--~~~-----~y~~a~GGaG 211 (474)
+.+|++++|+|+.+..+-|.++++.+. ++.....|...... . .. ..+ ...++..|++
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHH 160 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccccccccc
Confidence 689999999999988777777775543 33333333321100 0 00 000 0012345677
Q ss_pred eeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 212 YALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 212 ~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
.++++.+++++.. +++. ...++|..++.=+.+.|.....
T Consensus 161 ~~~~~~~~~~~g~-~~~~-----~~~~eD~~l~~r~~~~G~~~~~ 199 (249)
T cd02525 161 GAYRREVFEKVGG-FDES-----LVRNEDAELNYRLRKAGYKIWL 199 (249)
T ss_pred ceEEHHHHHHhCC-CCcc-----cCccchhHHHHHHHHcCcEEEE
Confidence 7889988887642 2221 1236888887666666665543
No 41
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.92 E-value=12 Score=34.28 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=59.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC--CCCceEEEeccCCC------CC--Ccccc----ccccccCcceeecHHHH
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD--HTQYLYIGTNSECV------SS--NFHAS----FNMAFGGAGYALSYPLV 219 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD--~~~p~YiG~~se~~------~q--~~~~~----y~~a~GGaG~vLSr~ll 219 (474)
...+|+++.|+|..+..+.|.++++.++ +.-.+..|...... .. ...|. ....+.|++.++++.++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 161 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLV 161 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHH
Confidence 3569999999999998888888877652 33333333322110 00 00010 12344566778899998
Q ss_pred HHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 220 EALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 220 ~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
+++... +.. ...++|..++.=+.+.|.++...|.
T Consensus 162 ~~iggf-~~~-----~~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 162 RQVGGF-REG-----FEGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred HHhCCC-CcC-----cccchhHHHHHHHHhccceEEEccH
Confidence 887532 211 1246898888777777877665543
No 42
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=71.38 E-value=23 Score=32.90 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=53.1
Q ss_pred ccEEEEEcCCccccHHHHHHHHhc-CCCCCceEEEeccCCCC--CCc-------------------cccccccccCccee
Q 037329 156 VRWYVMADDDTILFVDNLVEVLAK-YDHTQYLYIGTNSECVS--SNF-------------------HASFNMAFGGAGYA 213 (474)
Q Consensus 156 ~kWfv~~DDDTf~~~~nL~~~L~~-yD~~~p~YiG~~se~~~--q~~-------------------~~~y~~a~GGaG~v 213 (474)
.+|+++.|+|..+.++.|..++.. .+++..+..|....... ++. ..+. ....|+.++
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKV-SDPTSGFRA 157 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCCCccch
Confidence 489999999999988888888876 45555566665432110 000 0011 112345567
Q ss_pred ecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 214 LSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 214 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
+++.+++++....+ ...+..|..+..-+.+.|..+..
T Consensus 158 ~~r~~~~~ig~~~~------~~~~~~~~~l~~~~~~~g~~i~~ 194 (224)
T cd06442 158 YRREVLEKLIDSLV------SKGYKFQLELLVRARRLGYRIVE 194 (224)
T ss_pred hhHHHHHHHhhhcc------CCCcEEeHHHHHHHHHcCCeEEE
Confidence 89999998861111 12233444444444556655443
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.54 E-value=24 Score=31.70 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=57.3
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcC--CCCCceEEEeccCCCCC----Cc---------cccccccccCcceeecHHHH
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKY--DHTQYLYIGTNSECVSS----NF---------HASFNMAFGGAGYALSYPLV 219 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~p~YiG~~se~~~q----~~---------~~~y~~a~GGaG~vLSr~ll 219 (474)
..+|+++.|+|..+..+.+.++|... +++..+..|........ .. .+.......|+|+++++.++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHHH
Confidence 57999999999999988888777322 33444555543211000 00 00113345678899999999
Q ss_pred HHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceE
Q 037329 220 EALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLT 255 (474)
Q Consensus 220 ~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt 255 (474)
+++.. ++. . ...++|..+..=+.+.|....
T Consensus 155 ~~~~~-f~~---~--~~~~~D~~~~~r~~~~g~~~~ 184 (202)
T cd06433 155 EKYGG-FDE---S--YRIAADYDLLLRLLLAGKIFK 184 (202)
T ss_pred HHhCC-Cch---h--hCchhhHHHHHHHHHcCCceE
Confidence 88754 221 1 124678877776767665553
No 44
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=69.19 E-value=10 Score=40.58 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=63.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcC--CCCCceEEEeccCCCC-------CC--------------ccccccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKY--DHTQYLYIGTNSECVS-------SN--------------FHASFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~p~YiG~~se~~~-------q~--------------~~~~y~~a~GGa 210 (474)
.+.+|+++.|+|+.+..+.|.++++.+ |++--..-|.+..... +. ..++-.++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 468999999999999988888887765 4433332232211000 00 011223456788
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
+.++.+.+++++.... .....||..++.-+...|-....+|.
T Consensus 234 ~~~~rr~al~~vGg~~-------~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 234 VAAFRRRALADVGYWS-------PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred eeEEEHHHHHHcCCCC-------CCcccccHHHHHHHHHcCCeEEEeec
Confidence 8899999988864321 12357999999999998877665554
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.28 E-value=24 Score=32.36 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhc-CCCCCceEEEeccC----C--CCCCccc---c-----------ccccccCcc
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAK-YDHTQYLYIGTNSE----C--VSSNFHA---S-----------FNMAFGGAG 211 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~-yD~~~p~YiG~~se----~--~~q~~~~---~-----------y~~a~GGaG 211 (474)
..+.+|+++.|+|..+.++.|.++++. ........++.... . ......+ . ......|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 457999999999999988888888775 33333434443221 0 0000000 0 012346888
Q ss_pred eeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcC
Q 037329 212 YALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLG 251 (474)
Q Consensus 212 ~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lG 251 (474)
+++.+.+++++...... ..+.+|..+...+...|
T Consensus 157 ~~~r~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 157 MAFNRELLELALPFPDA------DVIMHDWWLALLASAFG 190 (214)
T ss_pred eeEEHHHHHhhcccccc------ccccchHHHHHHHHHcC
Confidence 99999999987653211 13568888877776644
No 46
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=61.67 E-value=53 Score=31.52 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=57.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC-CCCceEEEeccCCCCC--Cccc-----------------cccc-cccCcce
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD-HTQYLYIGTNSECVSS--NFHA-----------------SFNM-AFGGAGY 212 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD-~~~p~YiG~~se~~~q--~~~~-----------------~y~~-a~GGaG~ 212 (474)
...+|+++.|+|..+.++.|.+++.... +.-.+.+|........ ...+ +... ...|+-.
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~ 171 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFR 171 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCccc
Confidence 3578999999999999888877776653 3456666764321100 0000 0011 1234445
Q ss_pred eecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 213 ALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 213 vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
++++.+++.+....+. ..+..|..+..=+...|..+...|-
T Consensus 172 ~~rr~~~~~i~~~~~~------~~~~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 172 LYKRSALEDLVSSVVS------KGYVFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred ceeHHHHHHHHhhccC------CCcEEehHHHHHHHHcCCcEEEeCc
Confidence 7799999988653321 2344565554444456766665543
No 47
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=61.58 E-value=1e+02 Score=31.03 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=61.0
Q ss_pred EEEEEcCCccccHHHHHHHHhcCCCC-CceEEEeccCCCC-----------------------CCccc------ccccc-
Q 037329 158 WYVMADDDTILFVDNLVEVLAKYDHT-QYLYIGTNSECVS-----------------------SNFHA------SFNMA- 206 (474)
Q Consensus 158 Wfv~~DDDTf~~~~nL~~~L~~yD~~-~p~YiG~~se~~~-----------------------q~~~~------~y~~a- 206 (474)
|+++.++||++..+.|.++|+..+.. ....+|....... ..... ....+
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVAS 166 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhh
Confidence 99999999999877777776543222 2222222211100 00000 00112
Q ss_pred ccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCCC
Q 037329 207 FGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGFH 261 (474)
Q Consensus 207 ~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gfh 261 (474)
.-|+..++++++++++-. +|+ ++ ..+.+|+.++.=+.++|.++...|+..
T Consensus 167 ~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R~~~~G~~i~~~p~a~ 216 (305)
T COG1216 167 LSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLRARKAGYKIYYVPDAI 216 (305)
T ss_pred cceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHHHHHcCCeEEEeeccE
Confidence 467889999999999875 432 22 356899999999999998777666633
No 48
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=59.25 E-value=25 Score=29.31 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=46.2
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCCCccccccccccCcceeecHHHHHHHHHHhhHhhhhcc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSSNFHASFNMAFGGAGYALSYPLVEALAAKFDKCVEKYQ 234 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~y~~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~ 234 (474)
+.+|++++|+|..+..+.+..++..+-.++..- .+.+.++++++++.++++....+. .
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~----~- 134 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEAD-----------------AVGGPGNLLFRRELLEEIGGFDEA----L- 134 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCce-----------------EEeccchheeeHHHHHHhCCcchH----h-
Confidence 699999999999998887777644332111110 111227899999999988654321 1
Q ss_pred CCChhhHHHHHHHHHc
Q 037329 235 NLYASDLMLYSCLADL 250 (474)
Q Consensus 235 ~~~~~D~~Lg~Cl~~l 250 (474)
..+++|..+..-+...
T Consensus 135 ~~~~ed~~~~~~~~~~ 150 (156)
T cd00761 135 LSGEEDDDFLLRLLRG 150 (156)
T ss_pred cCCcchHHHHHHHHhh
Confidence 1236777766555543
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=57.93 E-value=26 Score=32.82 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEec
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTN 191 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~ 191 (474)
...+|+++.|+|+.+..+.|.+.+..........+|..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 46799999999999998777666554432223355654
No 50
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=57.69 E-value=19 Score=30.95 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=20.8
Q ss_pred CccEEEEEcCCccccHHHHHHHHhc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAK 179 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~ 179 (474)
+.+|++++|+|..+..+-|.+++..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~ 102 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVP 102 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHH
Confidence 7899999999999987777777443
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=56.07 E-value=41 Score=30.29 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=46.4
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC--------------Cccccccc-cccCcceeecHHHH
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS--------------NFHASFNM-AFGGAGYALSYPLV 219 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q--------------~~~~~y~~-a~GGaG~vLSr~ll 219 (474)
..+|+++.|+|.....+-|.++++..++...+.+|........ ....+... -.+|+.+++++.++
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHH
Confidence 3599999999999987777777776666666777766532210 00001111 24566778999999
Q ss_pred HHHHH
Q 037329 220 EALAA 224 (474)
Q Consensus 220 ~~L~~ 224 (474)
+++..
T Consensus 160 ~~i~~ 164 (181)
T cd04187 160 DALLL 164 (181)
T ss_pred HHHHh
Confidence 99875
No 52
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=53.96 E-value=31 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.7
Q ss_pred ccEEEEEcCCccccHHHHHHHHhc-CCCCCceEEEecc
Q 037329 156 VRWYVMADDDTILFVDNLVEVLAK-YDHTQYLYIGTNS 192 (474)
Q Consensus 156 ~kWfv~~DDDTf~~~~nL~~~L~~-yD~~~p~YiG~~s 192 (474)
.+|+++.|+|+.+..+-|.+++.. ......+.+|...
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 399999999999998888888876 4445566667654
No 53
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=52.18 E-value=42 Score=35.03 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhcCCCCCce-EEEecc-------CCC---CCC--------------ccccccccc
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAKYDHTQYL-YIGTNS-------ECV---SSN--------------FHASFNMAF 207 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~-YiG~~s-------e~~---~q~--------------~~~~y~~a~ 207 (474)
....+++++.|.||....+-|.++++.++..... +.|.+. .+. .+. ...+.....
T Consensus 135 ~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 214 (439)
T COG1215 135 RAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFL 214 (439)
T ss_pred hcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEE
Confidence 3459999999999999999999999988644333 566552 110 000 011234557
Q ss_pred cCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCCC
Q 037329 208 GGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKGF 260 (474)
Q Consensus 208 GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~gf 260 (474)
+|++.++-+++++++..... ..-+||..++.=+...|-.....+.-
T Consensus 215 ~G~~~~~rr~aL~~~g~~~~-------~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 215 SGSSSAFRRSALEEVGGWLE-------DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred cceeeeEEHHHHHHhCCCCC-------CceeccHHHHHHHHHCCCeEEEeecc
Confidence 89999999999999873222 33479999999999888766655544
No 54
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=51.80 E-value=35 Score=37.57 Aligned_cols=102 Identities=15% Similarity=-0.024 Sum_probs=60.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCC-----ceEEEeccCCCC-----------C-------CccccccccccCc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQ-----YLYIGTNSECVS-----------S-------NFHASFNMAFGGA 210 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~-----p~YiG~~se~~~-----------q-------~~~~~y~~a~GGa 210 (474)
..++++++.|-|+.+.++-|..+-. ..++. |++.+....... . ....|.....+|.
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYNY-LLPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHHh-hcCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 4579999999999999888776532 22221 232221111000 0 0011222346799
Q ss_pred ceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEec
Q 037329 211 GYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLE 257 (474)
Q Consensus 211 G~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~ 257 (474)
|+++++.+++++.....+. ........||..+|.-+...|-+....
T Consensus 236 g~afRR~aLe~l~~~~GG~-~fd~~sLTED~dLglRL~~~G~rv~y~ 281 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQ-PFDSDSLTEDYDIGLRLKRAGFRQIFV 281 (504)
T ss_pred eEEeEHHHHHHHHhhcCCC-CCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 9999999999985422111 000133579999999999988665543
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=51.62 E-value=39 Score=33.52 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcC--CCCC-----ce-EEEeccC-CCCC---Cc-----------cc-cccccccC
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKY--DHTQ-----YL-YIGTNSE-CVSS---NF-----------HA-SFNMAFGG 209 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~-----p~-YiG~~se-~~~q---~~-----------~~-~y~~a~GG 209 (474)
.+.+++++.|.|+.+.++-|.+++..+ ||+- ++ ++...+. ...+ .. .| +....+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 173 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWG 173 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccc
Confidence 578999999999999999999988765 4431 11 1111100 0000 00 01 00112347
Q ss_pred cceeecHHHHHHHHHH--hhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 210 AGYALSYPLVEALAAK--FDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 210 aG~vLSr~ll~~L~~~--~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
.++++.+.+++++... ..+........-.+|..++.-+...|-.....|.
T Consensus 174 ~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 174 HNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred eEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 8899999988875321 1111100012346999999999988876665554
No 56
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=48.80 E-value=23 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.2
Q ss_pred CCCccEEEEEcCCccccHH----HHHHHH
Q 037329 153 DEDVRWYVMADDDTILFVD----NLVEVL 177 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~----nL~~~L 177 (474)
..+.+|++++|-|-|+.++ +|.++|
T Consensus 69 ~~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 4589999999999999854 355544
No 57
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=46.73 E-value=1e+02 Score=31.84 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcC----CCCCceEEEeccCCCC----CCcc-----------------ccccccccC
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKY----DHTQYLYIGTNSECVS----SNFH-----------------ASFNMAFGG 209 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~y----D~~~p~YiG~~se~~~----q~~~-----------------~~y~~a~GG 209 (474)
..+|++++|.|+...++.+.+++... ++.-.+.+|....... .... .+..+.--.
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46899999999998876655555433 3445688887653110 0000 012233334
Q ss_pred cc-eeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecCC
Q 037329 210 AG-YALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEKG 259 (474)
Q Consensus 210 aG-~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~g 259 (474)
.| -++++.+++.+.+... . ..+.-|..+-..+...|.++...|-
T Consensus 242 ~Gfk~~~r~~~~~i~~~~~--~----~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSLH--L----ERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCeEEEeHHHHHHHhhhcc--c----cCccchHHHHHHHHHcCCCEEEEce
Confidence 45 4889999998854321 1 2345677777777777877766554
No 58
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=43.46 E-value=59 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=29.3
Q ss_pred ccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 207 FGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 207 ~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
..|+.+++++.+.+++-. +|.. +....++|..+..=+.+.|-.+..
T Consensus 171 ~~g~~~~irr~~~~~vGg-fDe~---~~~~~~ED~Dl~~R~~~~G~~i~~ 216 (299)
T cd02510 171 MAGGLFAIDREWFLELGG-YDEG---MDIWGGENLELSFKVWQCGGSIEI 216 (299)
T ss_pred ccceeeEEEHHHHHHhCC-CCCc---ccccCchhHHHHHHHHHcCCeEEE
Confidence 457788999999988754 3321 111124898877766677765543
No 59
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=41.23 E-value=64 Score=33.09 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=46.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEeccCCCCC--------------CccccccccccCcce-eecHHH
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGTNSECVSS--------------NFHASFNMAFGGAGY-ALSYPL 218 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~~se~~~q--------------~~~~~y~~a~GGaG~-vLSr~l 218 (474)
...+|+++.|+|.-.+++.+.++++.....-.+..|........ +...+.++...++|+ ++++.+
T Consensus 89 A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~ 168 (325)
T PRK10714 89 VTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHI 168 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHH
Confidence 36799999999999999888888877643334444544321100 001133455667787 899999
Q ss_pred HHHHHH
Q 037329 219 VEALAA 224 (474)
Q Consensus 219 l~~L~~ 224 (474)
++.+..
T Consensus 169 ~~~l~~ 174 (325)
T PRK10714 169 VDAMLH 174 (325)
T ss_pred HHHHHH
Confidence 999854
No 60
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=35.53 E-value=21 Score=30.65 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred CccEEEEEcCCccccHH---HHHHHHhcCCCCCceEEEecc
Q 037329 155 DVRWYVMADDDTILFVD---NLVEVLAKYDHTQYLYIGTNS 192 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~---nL~~~L~~yD~~~p~YiG~~s 192 (474)
..+|++++|||+++..+ +|++.+.+. .....+|...
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~--~~~~~~~~~~ 116 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKN--PPDVVIGSVI 116 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHC--TTEEEEEEEE
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhC--CCcEEEEEEE
Confidence 34499999999999964 555555543 2334455443
No 61
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=35.49 E-value=97 Score=35.55 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcC--CCCCceEEEeccCCCC--------------C-------------Ccccccc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKY--DHTQYLYIGTNSECVS--------------S-------------NFHASFN 204 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~y--D~~~p~YiG~~se~~~--------------q-------------~~~~~y~ 204 (474)
.+.+|+++.|.|+....+-|.+.+..+ ||+ --.++.+..... + ...++-.
T Consensus 227 a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~-v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~ 305 (713)
T TIGR03030 227 TDGELILIFDADHVPTRDFLQRTVGWFVEDPK-LFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAA 305 (713)
T ss_pred cCCCEEEEECCCCCcChhHHHHHHHHHHhCCC-EEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCe
Confidence 456999999999999988888887766 332 122222210000 0 0011212
Q ss_pred ccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 205 MAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 205 ~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
+ +.|++.++.+++++++-.... ....||..++..+.+.|-+...
T Consensus 306 ~-~~Gs~~~iRR~al~~iGGf~~-------~~vtED~~l~~rL~~~G~~~~y 349 (713)
T TIGR03030 306 F-FCGSAAVLRREALDEIGGIAG-------ETVTEDAETALKLHRRGWNSAY 349 (713)
T ss_pred e-ecCceeEEEHHHHHHcCCCCC-------CCcCcHHHHHHHHHHcCCeEEE
Confidence 2 457889999999988753211 2347999999999988865443
No 62
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=30.66 E-value=2.6e+02 Score=26.91 Aligned_cols=152 Identities=11% Similarity=0.111 Sum_probs=69.5
Q ss_pred EEEEEEcCccChHHHHHHHHHhhhhcCCeEEEeeecCCCCCCCC-C---CCCCCCeEeccCCcccccccccchhHH-HHH
Q 037329 67 IVFGIAGTVNGWKYRRAYVEAWWRPNVTRGYLFLERFPSREFLP-W---PPSSPPFRVNENITRLKSYEKIKNSFQ-VRV 141 (474)
Q Consensus 67 IvfgI~TS~~~~~~R~~aIk~TW~~~~~r~~vFld~~~~~~~~~-~---~~~lp~v~is~d~s~f~~~~k~g~~~a-~R~ 141 (474)
|.|.|.+.....+.-...++... ......+|.+|...+....+ . ....+.+.+..+ +....| |..+. .-+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~-~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~--r~~v~W--G~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY-HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPK--RVDVRW--GGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-------T--TSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc-CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeeccc--cccccc--CCccHHHHH
Confidence 45666554434443334444444 33445667888773211111 0 123455544332 223333 33333 335
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCcccc--HHHHHHHHhcCCCCCceEEEeccCCCCCCcccc----c---------ccc
Q 037329 142 FRTILETFREGDEDVRWYVMADDDTILF--VDNLVEVLAKYDHTQYLYIGTNSECVSSNFHAS----F---------NMA 206 (474)
Q Consensus 142 ~~~v~e~~~~~~~~~kWfv~~DDDTf~~--~~nL~~~L~~yD~~~p~YiG~~se~~~q~~~~~----y---------~~a 206 (474)
+.++.++++. .++.+||++.-.+.|-. .+.+.++|+..+....+.-+...+.......+. . .+.
T Consensus 76 l~ll~~al~~-~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 76 LNLLREALKR-DGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHH--S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHhc-CCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 6677777764 45899999999999976 688999998864333322222211111000000 0 124
Q ss_pred ccCcceeecHHHHHHHHH
Q 037329 207 FGGAGYALSYPLVEALAA 224 (474)
Q Consensus 207 ~GGaG~vLSr~ll~~L~~ 224 (474)
.|..=+.||+++++.|..
T Consensus 155 ~GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILD 172 (244)
T ss_dssp EE-S--EEEHHHHHHHHH
T ss_pred ccceeeEeeHHHHHHhhh
Confidence 677789999999999984
No 63
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=30.59 E-value=2.6e+02 Score=32.35 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=61.3
Q ss_pred CccEEEEEcCCccccHHHHHHHHhcCCCCCceEEEe--ccCC-C------------C----CC----ccccccccccCcc
Q 037329 155 DVRWYVMADDDTILFVDNLVEVLAKYDHTQYLYIGT--NSEC-V------------S----SN----FHASFNMAFGGAG 211 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~nL~~~L~~yD~~~p~YiG~--~se~-~------------~----q~----~~~~y~~a~GGaG 211 (474)
.++-+++.|-|+.+-++.|. +++.+.+.....-+. +... . . .. ...+.....+|.|
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~ 233 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVG 233 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCce
Confidence 56778999999999999997 334332222111110 1000 0 0 00 0112245678999
Q ss_pred eeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEecC
Q 037329 212 YALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTLEK 258 (474)
Q Consensus 212 ~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~~~ 258 (474)
+++||.+++.|.+.-+++. ..+..-.||..+|.=+...|....-.+
T Consensus 234 ~af~Rr~l~al~~~ggg~~-~~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 234 TCFSRRAVTALLEDGDGIA-FDVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred EEEecccHHHHHHhcCCCC-cCCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 9999998887776543221 112345799999999999997665544
No 64
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=23.49 E-value=77 Score=31.23 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCccEEEEEcCCcccc-H-HHHHHHHh
Q 037329 144 TILETFREGDEDVRWYVMADDDTILF-V-DNLVEVLA 178 (474)
Q Consensus 144 ~v~e~~~~~~~~~kWfv~~DDDTf~~-~-~nL~~~L~ 178 (474)
++.+++.. .|+++|++..|.|+++. + -.|.+.+-
T Consensus 66 ~lr~~m~~-~P~~~wv~~lD~Dali~n~~~~L~~~il 101 (239)
T PF05637_consen 66 ALRAAMKK-YPEAEWVWWLDSDALIMNPDFSLEEHIL 101 (239)
T ss_dssp HHHHHHHH--TT-SEEEEE-TTEEE------------
T ss_pred HHHHHHHh-CCCCCEEEEEcCCeEEEecccccccccc
Confidence 55566654 69999999999999987 3 24444443
No 65
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=22.68 E-value=1.4e+02 Score=31.81 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHhcCC
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLAKYD 181 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~~yD 181 (474)
.+.+|+++.|+|+.+..+.|.++++.++
T Consensus 130 s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 130 SIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred ccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 4578999999999999888888887764
No 66
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=21.95 E-value=2e+02 Score=27.67 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCCccEEEEEcCCccccHHHHHHHHhcCC
Q 037329 153 DEDVRWYVMADDDTILFVDNLVEVLAKYD 181 (474)
Q Consensus 153 ~~~~kWfv~~DDDTf~~~~nL~~~L~~yD 181 (474)
..+.+|+++.|.||.+..+-|.+++..++
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~ 99 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMD 99 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHH
Confidence 46789999999999999888888877663
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=21.45 E-value=3.8e+02 Score=26.52 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=60.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHh---cCCCC-CceEEEeccC-C--C-----CC-----------------Ccccccc
Q 037329 154 EDVRWYVMADDDTILFVDNLVEVLA---KYDHT-QYLYIGTNSE-C--V-----SS-----------------NFHASFN 204 (474)
Q Consensus 154 ~~~kWfv~~DDDTf~~~~nL~~~L~---~yD~~-~p~YiG~~se-~--~-----~q-----------------~~~~~y~ 204 (474)
...+|+++.|.|.++..+.|.+.+. ..+.+ ...+++.... . . .. +..++ .
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWE-F 165 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccc-c
Confidence 4789999999999999988888888 44332 2333332211 0 0 00 00111 1
Q ss_pred ccccCcceeecHHHHHHHHHHhhHhhhhccCCChhhHHHHHHHHHcCCceEe
Q 037329 205 MAFGGAGYALSYPLVEALAAKFDKCVEKYQNLYASDLMLYSCLADLGVTLTL 256 (474)
Q Consensus 205 ~a~GGaG~vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Cl~~lGV~lt~ 256 (474)
.+..|+-+++++....++... | +.+....+||..++.=|.+.|..+..
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGf-D---E~f~G~G~ED~D~~~RL~~~~~~~~~ 213 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGF-D---ERFRGWGYEDIDFGYRLKKAGYKFKR 213 (281)
T ss_pred ccccceEEEEEHHHHHHhCCC-C---ccccCCCcchHHHHHHHHHcCCcEec
Confidence 234458889999888887543 2 23323336999999888888765543
No 68
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.91 E-value=3.6e+02 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.4
Q ss_pred ccCcceeecHHHHHHHHHHhh
Q 037329 207 FGGAGYALSYPLVEALAAKFD 227 (474)
Q Consensus 207 ~GGaG~vLSr~ll~~L~~~~d 227 (474)
-|=+||++|+.+++.+.+...
T Consensus 155 ~gt~gYiis~~aAk~fl~~~~ 175 (255)
T COG3306 155 LGTAGYIISRKAAKKFLELTE 175 (255)
T ss_pred cCccceeecHHHHHHHHHHhh
Confidence 577899999999999998764
No 69
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=20.66 E-value=1.2e+02 Score=31.67 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=39.6
Q ss_pred CccEEEEEcCCccccHH-------HHHHHHhcC-CCCCceEEEeccCCCCCCccc--cccccc-cCcceeecHHH
Q 037329 155 DVRWYVMADDDTILFVD-------NLVEVLAKY-DHTQYLYIGTNSECVSSNFHA--SFNMAF-GGAGYALSYPL 218 (474)
Q Consensus 155 ~~kWfv~~DDDTf~~~~-------nL~~~L~~y-D~~~p~YiG~~se~~~q~~~~--~y~~a~-GGaG~vLSr~l 218 (474)
.+++.+.+|||++.--+ -|.+-+... .|+.|.++-..+..+.....| ||||.. .|.=+++|.+|
T Consensus 93 ~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPfS~R~gv~vaiS~GL 167 (346)
T PLN03180 93 KKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPTAVSHGL 167 (346)
T ss_pred cceEEEEECCCCCCCCCCccccccHHHHHHHhcCCCCCCceeecccccCccCCcccCCCCccccCCcceEEeccc
Confidence 59999999999996633 333222221 377788887776644333333 677732 35567777765
Done!