BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037330
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XZM|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 1
 pdb|2XZN|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 2
          Length = 208

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)

Query: 12  KSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMK 71
           KS HV +++ KR K + L+ +IEEQF S R+LACI SRPGQ GRADGYILEGKELEFY++
Sbjct: 143 KSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIR 201

Query: 72  KLQRKK 77
           KLQ KK
Sbjct: 202 KLQSKK 207


>pdb|3U5C|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome A
 pdb|3U5G|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome B
          Length = 200

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 46/70 (65%)

Query: 8   EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELE 67
           E   KS +  RK   R     ++  +E QF +GRL ACI+SRPGQ GR DGYILEG+EL 
Sbjct: 131 ETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELA 190

Query: 68  FYMKKLQRKK 77
           FY+++L  KK
Sbjct: 191 FYLRRLTAKK 200


>pdb|3ZEY|5 Chain 5, High-resolution Cryo-electron Microscopy Structure Of The
           Trypanosoma Brucei Ribosome
          Length = 220

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 47/67 (70%)

Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           K SS + RK E R+K   ++  + +Q   GRLLA I SRPGQ GRADG +LEG EL+FY+
Sbjct: 153 KASSKLKRKWEYRRKHHKIEKALADQLREGRLLARITSRPGQTGRADGALLEGAELQFYL 212

Query: 71  KKLQRKK 77
           KKL +KK
Sbjct: 213 KKLDKKK 219


>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
          Length = 302

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 3   DAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILE 62
           D  + E  +KS   +R L + +K     P +    GSG     +A     CG+ D  I +
Sbjct: 228 DFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVA-TCGSGVTACHVALGAYLCGKPDVPIYD 286

Query: 63  GKELEFYMK 71
           G  +E+YM+
Sbjct: 287 GSWVEWYMR 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,618,429
Number of Sequences: 62578
Number of extensions: 91880
Number of successful extensions: 110
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)