Query 037330
Match_columns 84
No_of_seqs 104 out of 215
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_I RP19, S14, YS9, 40S rib 100.0 9.1E-39 3.1E-43 238.1 3.9 71 7-77 130-200 (200)
2 2xzm_2 40S ribosomal protein S 100.0 3.2E-38 1.1E-42 236.4 3.6 70 7-77 138-207 (208)
3 2kcp_A 30S ribosomal protein S 99.3 5.3E-13 1.8E-17 90.5 1.6 28 37-66 66-93 (98)
4 2kco_A 30S ribosomal protein S 99.2 1.3E-12 4.4E-17 92.4 0.8 25 43-67 108-132 (133)
5 3j20_J 30S ribosomal protein S 97.0 0.0003 1E-08 49.0 2.0 24 37-62 103-126 (127)
6 3u65_B TP33 protein; tetratric 65.2 2.5 8.4E-05 31.2 1.5 17 46-62 64-80 (328)
7 1u9c_A APC35852; structural ge 60.0 5.9 0.0002 26.7 2.5 38 28-65 110-151 (224)
8 1n57_A Chaperone HSP31, protei 53.6 7 0.00024 28.5 2.2 36 29-65 167-205 (291)
9 3mmg_A Nuclear inclusion prote 51.7 4.6 0.00016 30.4 0.9 20 42-61 140-164 (241)
10 1rw7_A YDR533CP; alpha-beta sa 48.0 12 0.00041 26.0 2.6 37 28-64 119-160 (243)
11 1lvm_A Catalytic domain of the 42.3 7.9 0.00027 28.9 0.9 22 41-62 147-173 (229)
12 3n7t_A Macrophage binding prot 35.0 21 0.00073 25.5 2.2 38 28-65 126-167 (247)
13 3kkl_A Probable chaperone prot 34.1 22 0.00076 25.3 2.2 38 28-65 119-161 (244)
14 3a43_A HYPD, hydrogenase nicke 33.3 13 0.00044 24.9 0.8 15 52-66 112-126 (139)
15 4go6_A HCF N-terminal chain 1; 29.8 16 0.00056 21.4 0.7 9 54-62 31-39 (45)
16 4fqj_A Hemagglutinin; monoclon 28.6 15 0.0005 28.7 0.5 14 45-58 196-217 (304)
17 1egd_A Medium chain acyl-COA d 27.4 50 0.0017 24.1 3.2 30 35-64 122-163 (396)
18 2vig_A Short-chain specific ac 26.7 36 0.0012 24.8 2.3 28 36-64 114-154 (391)
19 3swo_A Glutaryl-COA dehydrogen 25.2 55 0.0019 23.9 3.1 29 35-64 132-173 (399)
20 2hal_A Hepatitis A protease 3C 24.8 20 0.00068 25.5 0.6 11 46-56 165-175 (212)
21 1ivh_A Isovaleryl-COA dehydrog 24.3 60 0.002 23.6 3.1 28 36-64 123-163 (394)
22 1ukw_A Acyl-COA dehydrogenase; 24.2 66 0.0023 23.2 3.3 28 36-64 112-152 (379)
23 3sf6_A Glutaryl-COA dehydrogen 23.5 67 0.0023 23.5 3.2 30 35-64 137-178 (403)
24 4dcd_A Protease 3C, genome pol 22.9 23 0.00078 25.5 0.6 9 48-56 149-157 (190)
25 2kdx_A HYPA, hydrogenase/ureas 22.4 26 0.0009 22.4 0.8 15 52-66 95-109 (119)
26 2eba_A Putative glutaryl-COA d 21.9 80 0.0027 22.8 3.3 30 35-64 118-160 (385)
27 2b0f_A Picornain 3C (protease 20.5 27 0.00094 24.7 0.6 11 46-56 139-149 (182)
28 3s9c_A Vipera russelli protein 20.3 1E+02 0.0035 20.1 3.4 34 39-76 187-223 (234)
29 3tql_A Arginine-binding protei 20.2 53 0.0018 20.2 1.8 21 53-73 149-169 (227)
No 1
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=100.00 E-value=9.1e-39 Score=238.06 Aligned_cols=71 Identities=51% Similarity=0.895 Sum_probs=63.9
Q ss_pred hhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhh
Q 037330 7 TEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK 77 (84)
Q Consensus 7 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK 77 (84)
++++++|+++++||++|+++++||++|+|||++||||||||||||||||||||||||+||+||++||++||
T Consensus 130 ~~~~k~s~~~~~k~~~r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk 200 (200)
T 3u5c_I 130 EETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200 (200)
T ss_dssp ------CSHHHHHHHHSCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHHHHHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875
No 2
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=100.00 E-value=3.2e-38 Score=236.44 Aligned_cols=70 Identities=64% Similarity=1.019 Sum_probs=67.6
Q ss_pred hhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhh
Q 037330 7 TEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK 77 (84)
Q Consensus 7 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK 77 (84)
.+++++|+++++|| +|++++++||+|+|||++||||||||||||||||||||||||+||+||+++|++||
T Consensus 138 ~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk 207 (208)
T 2xzm_2 138 LGNKEKSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK 207 (208)
T ss_dssp CCSCCSSTTHHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhcc
Confidence 45789999999999 99999999999999999999999999999999999999999999999999999987
No 3
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=99.29 E-value=5.3e-13 Score=90.49 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=25.5
Q ss_pred hhcCceeEEEeccCCcccccceeeeccchH
Q 037330 37 FGSGRLLACIASRPGQCGRADGYILEGKEL 66 (84)
Q Consensus 37 f~~GrllA~IsSRPGQ~GraDGyILEGkEL 66 (84)
...|+ |||+|||||+|++|||||||+|-
T Consensus 66 ~d~Gk--A~VTSRPGQdG~vnavlL~g~e~ 93 (98)
T 2kcp_A 66 TNLGN--VRVTSRPGQDGVINGVLIRELEH 93 (98)
T ss_dssp ESSSE--EEECSCTTGGGSCEEEEECCSCC
T ss_pred ecCcE--EEEecCCCCccEEEEEEEecccc
Confidence 34798 99999999999999999999984
No 4
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=99.23 E-value=1.3e-12 Score=92.42 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=24.3
Q ss_pred eEEEeccCCcccccceeeeccchHH
Q 037330 43 LACIASRPGQCGRADGYILEGKELE 67 (84)
Q Consensus 43 lA~IsSRPGQ~GraDGyILEGkELe 67 (84)
||||+|||||+|++|||||||+||+
T Consensus 108 ~A~VtSRPGQdG~vnavlleg~el~ 132 (133)
T 2kco_A 108 LAVVTSRPGQDGVINAVLLKNESQR 132 (133)
T ss_dssp EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred eEEEecCCCCcceEEEEEEeccccc
Confidence 7999999999999999999999996
No 5
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.96 E-value=0.0003 Score=49.01 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.1
Q ss_pred hhcCceeEEEeccCCcccccceeeec
Q 037330 37 FGSGRLLACIASRPGQCGRADGYILE 62 (84)
Q Consensus 37 f~~GrllA~IsSRPGQ~GraDGyILE 62 (84)
..-|+ |+|+|||||.|..++++||
T Consensus 103 te~G~--a~vtsrPgqdG~vNavll~ 126 (127)
T 3j20_J 103 TEIGK--AKVTSRPGQDGVVNAILLE 126 (127)
T ss_dssp BSSSE--EEECSCSSSSCCCCEEECC
T ss_pred EcCce--EEEecCCccCceEEEEEec
Confidence 44564 9999999999999999998
No 6
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=65.17 E-value=2.5 Score=31.23 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=13.8
Q ss_pred EeccCCcccccceeeec
Q 037330 46 IASRPGQCGRADGYILE 62 (84)
Q Consensus 46 IsSRPGQ~GraDGyILE 62 (84)
-.+||||.|.+|..+.-
T Consensus 64 ~~~~~~~~G~id~~~~~ 80 (328)
T 3u65_B 64 KSSRPGQAAPLDGAVFS 80 (328)
T ss_dssp SCSSTTSCCSCSEEEEC
T ss_pred hhhccCCCCceeEEEec
Confidence 34699999999987764
No 7
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=60.01 E-value=5.9 Score=26.75 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=28.9
Q ss_pred CCChHHHHHhhcCceeEEEeccC---Ccccccce-eeeccch
Q 037330 28 TLDPHIEEQFGSGRLLACIASRP---GQCGRADG-YILEGKE 65 (84)
Q Consensus 28 kv~~~L~eqf~~GrllA~IsSRP---GQ~GraDG-yILEGkE 65 (84)
.+-..|.+++.+|+++|.|++-| ...|..|| +||.|+.
T Consensus 110 ~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~ 151 (224)
T 1u9c_A 110 TLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKT 151 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCE
T ss_pred HHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcE
Confidence 34456778899999999999977 46676667 4788754
No 8
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=53.56 E-value=7 Score=28.49 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=26.4
Q ss_pred CChHHHHHhhcCceeEEEeccCC---cccccceeeeccch
Q 037330 29 LDPHIEEQFGSGRLLACIASRPG---QCGRADGYILEGKE 65 (84)
Q Consensus 29 v~~~L~eqf~~GrllA~IsSRPG---Q~GraDGyILEGkE 65 (84)
+-..|.++..+|+++|.||.=|- ..|..|| ||.|+.
T Consensus 167 l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~G-LL~Gr~ 205 (291)
T 1n57_A 167 VAAALQWAIKNDRFVISLCHGPAAFLALRHGDN-PLNGYS 205 (291)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCC-TTTTCE
T ss_pred HHHHHHHHHHcCCEEEEECccHHHHHhhcccCc-cCCCCE
Confidence 33456778889999999999884 4455557 788753
No 9
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=51.73 E-value=4.6 Score=30.41 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=15.6
Q ss_pred eeEEEeccCCccccc-----ceeee
Q 037330 42 LLACIASRPGQCGRA-----DGYIL 61 (84)
Q Consensus 42 llA~IsSRPGQ~Gra-----DGyIL 61 (84)
--=-|++.+|+||-+ ||.|+
T Consensus 140 WkHwIsT~~G~CGlPlVs~~Dg~IV 164 (241)
T 3mmg_A 140 WQHWITTKDGQAGSPLVSIIDGNIL 164 (241)
T ss_dssp EEECBCCCTTCTTCEEEETTTCCEE
T ss_pred EEEEcCCCCCcCCCeEEEcCCCcEE
Confidence 344578899999975 88886
No 10
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=47.96 E-value=12 Score=26.01 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=25.3
Q ss_pred CCChHHHHHhhcCceeEEEeccC---Cccccc-ce-eeeccc
Q 037330 28 TLDPHIEEQFGSGRLLACIASRP---GQCGRA-DG-YILEGK 64 (84)
Q Consensus 28 kv~~~L~eqf~~GrllA~IsSRP---GQ~Gra-DG-yILEGk 64 (84)
.+-..|.++..+|+++|.||+-| ...|.+ || +||.|+
T Consensus 119 ~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~ 160 (243)
T 1rw7_A 119 DLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGK 160 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTC
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCc
Confidence 34456777888999999999977 344532 33 467664
No 11
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=42.29 E-value=7.9 Score=28.87 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=16.2
Q ss_pred ceeEEEeccCCccccc-----ceeeec
Q 037330 41 RLLACIASRPGQCGRA-----DGYILE 62 (84)
Q Consensus 41 rllA~IsSRPGQ~Gra-----DGyILE 62 (84)
.--=-|++.+|+||-+ ||+|+=
T Consensus 147 fWkHwIsT~~G~CGlPlVs~~Dg~IVG 173 (229)
T 1lvm_A 147 FWKHWIQTKDGQCGSPLVSTRDGFIVG 173 (229)
T ss_dssp EEEECBCCCTTCTTCEEEETTTCCEEE
T ss_pred EeEEEeeCCCCcCCCcEEECCCCcEEE
Confidence 3444588899999965 888874
No 12
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=34.96 E-value=21 Score=25.53 Aligned_cols=38 Identities=13% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCChHHHHHhhcCceeEEEeccCCccccc---ce-eeeccch
Q 037330 28 TLDPHIEEQFGSGRLLACIASRPGQCGRA---DG-YILEGKE 65 (84)
Q Consensus 28 kv~~~L~eqf~~GrllA~IsSRPGQ~Gra---DG-yILEGkE 65 (84)
.+-..|.+++.+|+++|.||.-|---..+ || .||.|+.
T Consensus 126 ~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~ 167 (247)
T 3n7t_A 126 HLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT 167 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence 34456788899999999999988433332 33 4666643
No 13
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=34.07 E-value=22 Score=25.26 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=27.2
Q ss_pred CCChHHHHHhhcCceeEEEeccCCccccc----ce-eeeccch
Q 037330 28 TLDPHIEEQFGSGRLLACIASRPGQCGRA----DG-YILEGKE 65 (84)
Q Consensus 28 kv~~~L~eqf~~GrllA~IsSRPGQ~Gra----DG-yILEGkE 65 (84)
.+-..|.+++.+|+++|.||.-|---..+ || .||.|+.
T Consensus 119 ~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~ 161 (244)
T 3kkl_A 119 NLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKA 161 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCce
Confidence 34456888999999999999988555554 32 4666643
No 14
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.32 E-value=13 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=13.2
Q ss_pred cccccceeeeccchH
Q 037330 52 QCGRADGYILEGKEL 66 (84)
Q Consensus 52 Q~GraDGyILEGkEL 66 (84)
.||..|.+|+.|+||
T Consensus 112 ~Cgs~~~~i~~G~el 126 (139)
T 3a43_A 112 KCGSHDFEVVKGRGV 126 (139)
T ss_dssp SSSCCCEEEEESSCE
T ss_pred cccCCccEEecCCeE
Confidence 678889999999986
No 15
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=29.84 E-value=16 Score=21.41 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=7.4
Q ss_pred cccceeeec
Q 037330 54 GRADGYILE 62 (84)
Q Consensus 54 GraDGyILE 62 (84)
--||+|||+
T Consensus 31 ptA~~YiLQ 39 (45)
T 4go6_A 31 ATADSYLLQ 39 (45)
T ss_dssp TTCSEEEEE
T ss_pred cchheeEEE
Confidence 358999997
No 16
>4fqj_A Hemagglutinin; monoclonal, immunoglobulin, viral protein-immune system COMP; HET: NAG BMA; 2.50A {Influenza b virus}
Probab=28.56 E-value=15 Score=28.74 Aligned_cols=14 Identities=43% Similarity=0.340 Sum_probs=11.3
Q ss_pred EEeccC--------Ccccccce
Q 037330 45 CIASRP--------GQCGRADG 58 (84)
Q Consensus 45 ~IsSRP--------GQ~GraDG 58 (84)
-|.+|| ||+||-|=
T Consensus 196 ~Ig~RP~v~~~~g~GQsGRi~~ 217 (304)
T 4fqj_A 196 QIGSFPDQTEDGGLPQSGRIVV 217 (304)
T ss_dssp CCSCCCCCCSSCCSCCSCEEEE
T ss_pred cCCCCCcccccCCCCccceEEE
Confidence 466799 99999973
No 17
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=27.37 E-value=50 Score=24.05 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=20.0
Q ss_pred HHhhcCceeEEEe-ccCCcc-------c----ccceeeeccc
Q 037330 35 EQFGSGRLLACIA-SRPGQC-------G----RADGYILEGK 64 (84)
Q Consensus 35 eqf~~GrllA~Is-SRPGQ~-------G----raDGyILEGk 64 (84)
..+.+|.+++|+. |-|+-- . ..|||+|.|.
T Consensus 122 ~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~ 163 (396)
T 1egd_A 122 GRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQ 163 (396)
T ss_dssp HHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEE
T ss_pred HHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEE
Confidence 3467899888876 666521 1 1378999984
No 18
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=26.74 E-value=36 Score=24.77 Aligned_cols=28 Identities=43% Similarity=0.905 Sum_probs=19.4
Q ss_pred HhhcCceeEEEe-ccCCccc--------c----cceeeeccc
Q 037330 36 QFGSGRLLACIA-SRPGQCG--------R----ADGYILEGK 64 (84)
Q Consensus 36 qf~~GrllA~Is-SRPGQ~G--------r----aDGyILEGk 64 (84)
.+.+|.+++|++ |-|+ .| + .|||||.|.
T Consensus 114 ~~~~g~~~~~~a~tEp~-~Gsd~~~~~t~A~~~~~g~~lnG~ 154 (391)
T 2vig_A 114 PFTSGDKIGCFALSEPG-NGSDAGAASTTARAEGDSWVLNGT 154 (391)
T ss_dssp GGSSSSCCEEEECCBTT-BSSSGGGCCCEEEEETTEEEEEEE
T ss_pred HHhCCCceEEEEecCCC-CCCCcccceeEEEEeCCEEEEeeE
Confidence 356788888876 6675 22 2 379999984
No 19
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=25.23 E-value=55 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.691 Sum_probs=20.4
Q ss_pred HHhhcCceeEEEe-ccCCccc------------ccceeeeccc
Q 037330 35 EQFGSGRLLACIA-SRPGQCG------------RADGYILEGK 64 (84)
Q Consensus 35 eqf~~GrllA~Is-SRPGQ~G------------raDGyILEGk 64 (84)
..+.+|.+++|+. |-|+- | ..|||+|.|.
T Consensus 132 ~~~~~G~~~~~~a~tEp~~-Gsd~~~~~t~A~~~~~g~~lnG~ 173 (399)
T 3swo_A 132 PRLAAGDAIGCFGLTEPDF-GSNPAGMRTRARRDGSDWILNGT 173 (399)
T ss_dssp HHHHHTSSCEEEECCBTTB-SSCGGGCCCEEEEETTEEEEEEE
T ss_pred HHHhCCCeeeEEEecCCCC-CCCCccceEEEEEeCCEEEEEEE
Confidence 3456899888887 67763 1 1379999984
No 20
>2hal_A Hepatitis A protease 3C; 3C protease, inhibitor design; HET: BBL; 1.35A {Hepatitis a virus} SCOP: b.47.1.4 PDB: 2h6m_A* 2h9h_A* 2cxv_A* 2a4o_A* 1hav_A 1qa7_A*
Probab=24.84 E-value=20 Score=25.46 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred EeccCCccccc
Q 037330 46 IASRPGQCGRA 56 (84)
Q Consensus 46 IsSRPGQ~Gra 56 (84)
..|+|||||-+
T Consensus 165 ~pT~~G~CGs~ 175 (212)
T 2hal_A 165 GEGLPGMCGGA 175 (212)
T ss_dssp CCCCTTCTTCE
T ss_pred cCCCCCcCCCe
Confidence 36899999864
No 21
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=24.26 E-value=60 Score=23.63 Aligned_cols=28 Identities=36% Similarity=0.742 Sum_probs=19.7
Q ss_pred HhhcCceeEEEe-ccCCccc--------c----cceeeeccc
Q 037330 36 QFGSGRLLACIA-SRPGQCG--------R----ADGYILEGK 64 (84)
Q Consensus 36 qf~~GrllA~Is-SRPGQ~G--------r----aDGyILEGk 64 (84)
.+.+|.+++|+. |-|+. | + .|||+|.|.
T Consensus 123 ~l~~G~~~~~~a~tEp~~-gsd~~~~~t~A~~~~~g~~lnG~ 163 (394)
T 1ivh_A 123 KLISGEYIGALAMSEPNA-GSDVVSMKLKAEKKGNHYILNGN 163 (394)
T ss_dssp HHHHTSSCEEEECCBTTB-SSSGGGCCCEEEECSSEEEEEEE
T ss_pred HHhCCCeEEEEEecCCCC-CcCcccceEEEEEcCCEEEEEeE
Confidence 467899888876 56652 2 2 379999984
No 22
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=24.17 E-value=66 Score=23.18 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=19.1
Q ss_pred HhhcCceeEEEe-ccCCccc--------c----cceeeeccc
Q 037330 36 QFGSGRLLACIA-SRPGQCG--------R----ADGYILEGK 64 (84)
Q Consensus 36 qf~~GrllA~Is-SRPGQ~G--------r----aDGyILEGk 64 (84)
.+.+|.+++|+. |-|+- | + .|||||.|.
T Consensus 112 ~~~~g~~~~~~a~tEp~~-Gsd~~~~~t~A~~~~~g~~lnG~ 152 (379)
T 1ukw_A 112 PLTEKPALAAFALSEPGN-GSDAAALKTRAIRQGDHYVLNGT 152 (379)
T ss_dssp GGTSSSCEEEEECCBTTB-SSCGGGCCCEEEEETTEEEEEEE
T ss_pred HHhCCCceEEEEecCCCC-CcChhhCeEEEEEeCCEEEEEEE
Confidence 456899888875 56642 2 2 379999984
No 23
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=23.51 E-value=67 Score=23.50 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=20.6
Q ss_pred HHhhcCceeEEEe-ccCCcc-------c----ccceeeeccc
Q 037330 35 EQFGSGRLLACIA-SRPGQC-------G----RADGYILEGK 64 (84)
Q Consensus 35 eqf~~GrllA~Is-SRPGQ~-------G----raDGyILEGk 64 (84)
..+.+|.+++|+. |-|+-- . ..|||+|.|.
T Consensus 137 ~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~ 178 (403)
T 3sf6_A 137 PDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGT 178 (403)
T ss_dssp HHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred HHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEE
Confidence 3467899988887 667621 0 2479999984
No 24
>4dcd_A Protease 3C, genome polyprotein; antiviral inhibitors, dipeptidyl inhib hydrolase-hydrolase inhibitor complex; HET: K36; 1.69A {Human poliovirus 1} PDB: 1l1n_A
Probab=22.87 E-value=23 Score=25.50 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=7.3
Q ss_pred ccCCccccc
Q 037330 48 SRPGQCGRA 56 (84)
Q Consensus 48 SRPGQ~Gra 56 (84)
|+|||||-+
T Consensus 149 T~~G~CGg~ 157 (190)
T 4dcd_A 149 TRAGQCGGV 157 (190)
T ss_dssp CCTTCTTCE
T ss_pred CCCCccCCE
Confidence 799999853
No 25
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.39 E-value=26 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=12.1
Q ss_pred cccccceeeeccchH
Q 037330 52 QCGRADGYILEGKEL 66 (84)
Q Consensus 52 Q~GraDGyILEGkEL 66 (84)
.||..+.+|+.|+||
T Consensus 95 ~Cgs~~~~i~~G~el 109 (119)
T 2kdx_A 95 KCHSKNVIITQGNEM 109 (119)
T ss_dssp SSSSCCCEEEESSCC
T ss_pred cccCCCcEEecCCeE
Confidence 467777889999986
No 26
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=21.93 E-value=80 Score=22.81 Aligned_cols=30 Identities=23% Similarity=0.684 Sum_probs=19.3
Q ss_pred HHhhcCceeEEEe-ccCCcc--------cc----cceeeeccc
Q 037330 35 EQFGSGRLLACIA-SRPGQC--------GR----ADGYILEGK 64 (84)
Q Consensus 35 eqf~~GrllA~Is-SRPGQ~--------Gr----aDGyILEGk 64 (84)
..+.+|.+++|+. |-|+-- .+ .|||+|.|.
T Consensus 118 ~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~ 160 (385)
T 2eba_A 118 PKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGT 160 (385)
T ss_dssp HHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEE
T ss_pred HHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEee
Confidence 3467899888876 555421 12 279999984
No 27
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A
Probab=20.49 E-value=27 Score=24.74 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=8.7
Q ss_pred EeccCCccccc
Q 037330 46 IASRPGQCGRA 56 (84)
Q Consensus 46 IsSRPGQ~Gra 56 (84)
-.|++||||-+
T Consensus 139 ~pTk~G~CGgv 149 (182)
T 2b0f_A 139 YATKTGQCGGV 149 (182)
T ss_dssp SCCCTTCTTCE
T ss_pred cCCCCcccCCe
Confidence 35799999975
No 28
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*
Probab=20.30 E-value=1e+02 Score=20.15 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.1
Q ss_pred cCceeEEEeccCCccccc---ceeeeccchHHHHHHHHHhh
Q 037330 39 SGRLLACIASRPGQCGRA---DGYILEGKELEFYMKKLQRK 76 (84)
Q Consensus 39 ~GrllA~IsSRPGQ~Gra---DGyILEGkELeFY~kki~~k 76 (84)
.+.|++++|.-++.||.. +-|. .+.+|+.+|+..
T Consensus 187 ~~~l~Gi~S~g~~~C~~~~~p~vyt----~V~~y~~WI~~~ 223 (234)
T 3s9c_A 187 NGEMHGIVAGGSEPCGQHLKPAVYT----KVFDYNNWIQSI 223 (234)
T ss_dssp TTEEEEEEEECCSSTTCTTCCEEEE----EGGGGHHHHHHH
T ss_pred eCCcEEEEEEeCCCCCCCCCCcEEE----EhHHhHHHHHHH
Confidence 456889888777778764 3333 478899998764
No 29
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=20.25 E-value=53 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=16.2
Q ss_pred ccccceeeeccchHHHHHHHH
Q 037330 53 CGRADGYILEGKELEFYMKKL 73 (84)
Q Consensus 53 ~GraDGyILEGkELeFY~kki 73 (84)
.||+|++|.....+.+|++..
T Consensus 149 ~grvDa~~~~~~~~~~~~~~~ 169 (227)
T 3tql_A 149 SGRVDAVVGDTPLIKQWLKQN 169 (227)
T ss_dssp TTSSSEEESCHHHHHHHHHHT
T ss_pred cCCcCEEEeChHHHHHHHHhC
Confidence 388999888877777777654
Done!