BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037331
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 27/238 (11%)
Query: 42 RVTALNLLDMGL---RGTIPGHLGNLSF-LVSLDISENNFHGHLLKELGQLHRLRVVSFA 97
++ L +LD+ G +P L NLS L++LD+S NNF G +L L Q +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK------- 393
Query: 98 YNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRI 157
+ LQ L LQNN FTG IP +L N S L +L FN + GTIPS +
Sbjct: 394 ---------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 158 GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLL 217
G+LSKL +L + + L+G+I E+ ++ LE L+L N+L+G IP + N + + ++L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 218 GNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIP 275
N+L+G +P IG L N+ L L N+ G IP + + +LI LD +N F+G IP
Sbjct: 499 NNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 120/265 (45%), Gaps = 23/265 (8%)
Query: 53 LRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVL 112
L G IP L + L +L + N+ G + L L +S + N+L+G WIG L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 113 SKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLV-------- 164
L IL+L NNSF+G IP L + L L N+ GTIP+ + S +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 165 ------NLGI-----GFSNL---QGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNIST 210
N G+ G NL QG ++ L + G PT N +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 211 IRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSF 270
+ L++ N LSG++P IG S+P + L LG N++ G+IP+ + + L LD +SN
Sbjct: 634 MMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 271 SGHIPNTFGNLRHLSVLSLMMNNLT 295
G IP L L+ + L NNL+
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 9/246 (3%)
Query: 64 LSFLVSLDISENNFHGHLLKEL-GQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122
L L L ++EN F G + L G L + + N G+ + G S L+ L L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 123 NSFTGLIP-NSLFNLSRLETLRAQFNIIGGTIPSRIGNLSK-LVNLGIGFSNLQGQILTE 180
N+F+G +P ++L + L+ L FN G +P + NLS L+ L + +N G IL
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 181 I-GNLQN-LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238
+ N +N L+ L L N +G IPPT+ N S + L+L N LSG +PS++G SL ++
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRD 446
Query: 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298
L L N L G IP + L L N +G IP+ N +L+ +SL N LT E
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE- 505
Query: 299 SSVDRW 304
+ +W
Sbjct: 506 --IPKW 509
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 122/263 (46%), Gaps = 34/263 (12%)
Query: 63 NLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122
NL FL D+S NNF + LG L+ + + NKLSG FS I ++L++L + +
Sbjct: 201 NLEFL---DVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRI-GNLSKLVNLGIGFSNLQGQILTEI 181
N F G IP L L+ L N G IP + G L L + ++ G +
Sbjct: 257 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 182 GNLQNLEYLVLGENNLSGFIP-PTIFNISTIRVLNLLGNQLSGHLPSTI----------- 229
G+ LE L L NN SG +P T+ + ++VL+L N+ SG LP ++
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 230 -------GHSLPNI--------KYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI 274
G LPN+ + L L N G IP +++N S L+ L + N SG I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 275 PNTFGNLRHLSVLSLMMNNLTTE 297
P++ G+L L L L +N L E
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGE 457
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 53 LRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVL 112
L G IP L N + L + +S N G + K +G+L L ++ + N SG+ + +G
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 113 SKLQILRLQNNSFTGLIPNSLF--------------------------------NLSRLE 140
L L L N F G IP ++F NL +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 141 TLRA-QFN-------------IIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQN 186
+R+ Q N + GG N ++ L + ++ L G I EIG++
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNL 246
L L LG N++SG IP + ++ + +L+L N+L G +P + +L + + L NNL
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNL 716
Query: 247 FGTIP 251
G IP
Sbjct: 717 SGPIP 721
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 151/347 (43%), Gaps = 83/347 (23%)
Query: 4 LLAFKAHVLDYRSALANNWSIFYPICSCVGISCGSRHQRVTALNL----LDMG------- 52
L++FK + D L +WS C+ G++C R +VT+++L L++G
Sbjct: 17 LISFKDVLPDKN--LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSS 72
Query: 53 ----------------LRGTIPGHLGNLSFLVSLDISENNFHGHL--LKELGQLHRLRVV 94
+ G++ G + S L SLD+S N+ G + L LG L+ +
Sbjct: 73 LLSLTGLESLFLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 95 SFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGT 152
+ + N L G S + L+ L++L L NS +G N++G
Sbjct: 132 NVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGA------------------NVVGWV 172
Query: 153 IPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIR 212
+ G +L +L I + + G + ++ NLE+L + NN S I P + + S ++
Sbjct: 173 LSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQ 226
Query: 213 VLNLLGNQLSGHLPSTIGH---------------------SLPNIKYLTLGANNLFGTIP 251
L++ GN+LSG I L +++YL+L N G IP
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 286
Query: 252 NSITNASN-LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297
+ ++ A + L GLD + N F G +P FG+ L L+L NN + E
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 27/238 (11%)
Query: 42 RVTALNLLDMGL---RGTIPGHLGNLSF-LVSLDISENNFHGHLLKELGQLHRLRVVSFA 97
++ L +LD+ G +P L NLS L++LD+S NNF G +L L Q +
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK------- 390
Query: 98 YNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRI 157
+ LQ L LQNN FTG IP +L N S L +L FN + GTIPS +
Sbjct: 391 ---------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 158 GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLL 217
G+LSKL +L + + L+G+I E+ ++ LE L+L N+L+G IP + N + + ++L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 218 GNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIP 275
N+L+G +P IG L N+ L L N+ G IP + + +LI LD +N F+G IP
Sbjct: 496 NNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 120/265 (45%), Gaps = 23/265 (8%)
Query: 53 LRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVL 112
L G IP L + L +L + N+ G + L L +S + N+L+G WIG L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 113 SKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLV-------- 164
L IL+L NNSF+G IP L + L L N+ GTIP+ + S +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 165 ------NLGI-----GFSNL---QGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNIST 210
N G+ G NL QG ++ L + G PT N +
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 211 IRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSF 270
+ L++ N LSG++P IG S+P + L LG N++ G+IP+ + + L LD +SN
Sbjct: 631 MMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 271 SGHIPNTFGNLRHLSVLSLMMNNLT 295
G IP L L+ + L NNL+
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 9/246 (3%)
Query: 64 LSFLVSLDISENNFHGHLLKEL-GQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122
L L L ++EN F G + L G L + + N G+ + G S L+ L L +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 123 NSFTGLIP-NSLFNLSRLETLRAQFNIIGGTIPSRIGNLSK-LVNLGIGFSNLQGQILTE 180
N+F+G +P ++L + L+ L FN G +P + NLS L+ L + +N G IL
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 181 I-GNLQN-LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238
+ N +N L+ L L N +G IPPT+ N S + L+L N LSG +PS++G SL ++
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRD 443
Query: 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298
L L N L G IP + L L N +G IP+ N +L+ +SL N LT E
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE- 502
Query: 299 SSVDRW 304
+ +W
Sbjct: 503 --IPKW 506
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 122/263 (46%), Gaps = 34/263 (12%)
Query: 63 NLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122
NL FL D+S NNF + LG L+ + + NKLSG FS I ++L++L + +
Sbjct: 198 NLEFL---DVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRI-GNLSKLVNLGIGFSNLQGQILTEI 181
N F G IP L L+ L N G IP + G L L + ++ G +
Sbjct: 254 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 182 GNLQNLEYLVLGENNLSGFIP-PTIFNISTIRVLNLLGNQLSGHLPSTI----------- 229
G+ LE L L NN SG +P T+ + ++VL+L N+ SG LP ++
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 230 -------GHSLPNI--------KYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI 274
G LPN+ + L L N G IP +++N S L+ L + N SG I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 275 PNTFGNLRHLSVLSLMMNNLTTE 297
P++ G+L L L L +N L E
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGE 454
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 53 LRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVL 112
L G IP L N + L + +S N G + K +G+L L ++ + N SG+ + +G
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 113 SKLQILRLQNNSFTGLIPNSLF--------------------------------NLSRLE 140
L L L N F G IP ++F NL +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 141 TLRA-QFN-------------IIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQN 186
+R+ Q N + GG N ++ L + ++ L G I EIG++
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNL 246
L L LG N++SG IP + ++ + +L+L N+L G +P + +L + + L NNL
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNL 713
Query: 247 FGTIP 251
G IP
Sbjct: 714 SGPIP 718
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 151/347 (43%), Gaps = 83/347 (23%)
Query: 4 LLAFKAHVLDYRSALANNWSIFYPICSCVGISCGSRHQRVTALNL----LDMG------- 52
L++FK + D L +WS C+ G++C R +VT+++L L++G
Sbjct: 14 LISFKDVLPDKN--LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSS 69
Query: 53 ----------------LRGTIPGHLGNLSFLVSLDISENNFHGHL--LKELGQLHRLRVV 94
+ G++ G + S L SLD+S N+ G + L LG L+ +
Sbjct: 70 LLSLTGLESLFLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 128
Query: 95 SFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGT 152
+ + N L G S + L+ L++L L NS +G N++G
Sbjct: 129 NVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGA------------------NVVGWV 169
Query: 153 IPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIR 212
+ G +L +L I + + G + ++ NLE+L + NN S I P + + S ++
Sbjct: 170 LSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQ 223
Query: 213 VLNLLGNQLSGHLPSTIGH---------------------SLPNIKYLTLGANNLFGTIP 251
L++ GN+LSG I L +++YL+L N G IP
Sbjct: 224 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 283
Query: 252 NSITNASN-LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297
+ ++ A + L GLD + N F G +P FG+ L L+L NN + E
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 17/292 (5%)
Query: 8 KAHVLDYRSALAN--NWSIFYPICSC-----VGISCGSRHQ--RVTALNL--LDMGLRGT 56
K +L + L N S + P C +G+ C + Q RV L+L L++
Sbjct: 8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67
Query: 57 IPGHLGNLSFLVSLDISE-NNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKL 115
IP L NL +L L I NN G + + +L +L + + +SG+ ++ + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 116 QILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKL-VNLGIGFSNLQ 174
L N+ +G +P S+ +L L + N I G IP G+ SKL ++ I + L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 175 GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLP 234
G+I NL NL ++ L N L G + + ++L N L+ L +G S
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS-K 244
Query: 235 NIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSV 286
N+ L L N ++GT+P +T L L+ + N+ G IP GNL+ V
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 107 SWIGVL--SKLQILRLQNNSFTGL-------IPNSLFNLSRLETLR-AQFNIIGGTIPSR 156
+W+GVL + Q R+ N +GL IP+SL NL L L N + G IP
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 157 IGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNL 216
I L++L L I +N+ G I + ++ L L N LSG +PP+I ++ + +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 217 LGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN 276
GN++SG +P + G +T+ N L G IP + N NL +D + N G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 277 TFGNLRHLSVLSLMMNNLTTESSSV 301
FG+ ++ + L N+L + V
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKV 240
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 28 ICSCV----GISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLK 83
+CSC + C S+ ++TA+ IP LD+ N K
Sbjct: 11 VCSCNNNKNSVDCSSK--KLTAI-------PSNIPADTK------KLDLQSNKLSSLPSK 55
Query: 84 ELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGL---IPNSLFNLSRLE 140
+L +LR++ NKL + L L+ L + +N L + + L NL+ L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 141 TLRAQFNIIGGTIPSRI-GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG 199
R Q ++P R+ +L+KL L +G++ LQ L +L+ L L N L
Sbjct: 116 LDRNQLK----SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 200 FIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGAN 244
+P F+ ++ ++ L L NQL +P SL +K L L N
Sbjct: 172 -VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
Query: 118 LRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRI-GNLSKLVNLGIGFSNLQGQ 176
L LQ+N + L + L++L L N + T+P+ I L L L + + LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 177 ILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPN 235
+ L NL L L N L +PP +F+ ++ + L+L N+L LP + L +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTS 158
Query: 236 IKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292
+K L L N L + + L L +N F +L L +L L N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 209 STIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSI-TNASNLIGLDFTS 267
+ + L+L N+LS LPS H L ++ L L N L T+P I NL L T
Sbjct: 37 ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94
Query: 268 NSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
N F L +L+ L L N L +
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS 123
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 178 LTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNI 236
++ + L NL YL+L N L +P +F+ ++ ++ L L+ NQL LP + L N+
Sbjct: 78 ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNL 135
Query: 237 KYLTLGANNLFGTIPNSITNA-SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295
YL L A+N ++P + + +NL LD + N F L L L L N L
Sbjct: 136 TYLNL-AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 296 TESSSV-DR 303
+ V DR
Sbjct: 195 SVPDGVFDR 203
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 149 IGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGN-----LQNLEYLVLGENNLSGFIPP 203
+GG I L +L NL + L G L + N L NL+ LVL EN L +P
Sbjct: 70 LGGNKLHDISALKELTNLT--YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPD 126
Query: 204 TIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNA-SNLI 261
+F+ ++ + LNL NQL LP + L N+ L L N L ++P + + + L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLK 184
Query: 262 GLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292
L N F L L + L N
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 233 LPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN-TFGNLRHLSVLSLMM 291
LPN++YL LG N L +++ +NL L T N +PN F L +L L L+
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVE 118
Query: 292 NNLTT 296
N L +
Sbjct: 119 NQLQS 123
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 87 QLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN--SFTGLIPNSLFNLSRLETLRA 144
+L L+ ++F NK +FS L L+ L L N SF G S F + L+ L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 145 QFNIIGGTIPSRIGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFIPP 203
FN + T+ S L +L +L SNL Q + +L+NL YL + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 204 TIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGL 263
+S++ VL + GN + I L N+ +L L L P + + S+L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 264 DFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVD---RW 304
+ SN F L L + L N +D RW
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 29 CSCVGISCGSRHQRVT--------ALNLLDMGL-RGTIPGH-----LGNLSFLVSLDISE 74
C G+ C R + T A+ LD+ + T GH NL L+
Sbjct: 30 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 88
Query: 75 NNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLF 134
N G LG L L + N LS SSW G LS L+ L L N + L SLF
Sbjct: 89 NTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 135 -NLSRLETLR----AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEY 189
NL+ L+TLR F+ I + + +L++L + N Q Q L I ++ +L
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT- 204
Query: 190 LVLGENNLSGFIPPTIFNI-STIRVLNLLGNQLS 222
L L E S F+ +I S++R L L L+
Sbjct: 205 LHLSE---SAFLLEIFADILSSVRYLELRDTNLA 235
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFN---IIGGTIPSRIGNLSKLVNLGIGFSNLQGQI 177
++ SFT IP+ L + +++L FN IG NL L+ + ++G
Sbjct: 39 RSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 95
Query: 178 LTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK 237
+G+L++L+ L +N+LS +S+++ LNL+GN +++ +L N++
Sbjct: 96 FYSLGSLEHLD---LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 152
Query: 238 YLTLGANNLFGTI 250
L +G F I
Sbjct: 153 TLRIGNVETFSEI 165
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 29 CSCVGISCGSRHQRVT--------ALNLLDMGL-RGTIPGH-----LGNLSFLVSLDISE 74
C G+ C R + T A+ LD+ + T GH NL L+
Sbjct: 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 75 NNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLF 134
N G LG L L + N LS SSW G LS L+ L L N + L SLF
Sbjct: 63 NTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 135 -NLSRLETLR----AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEY 189
NL+ L+TLR F+ I + + +L++L + N Q Q L I ++ +L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT- 178
Query: 190 LVLGENNLSGFIPPTIFNI-STIRVLNLLGNQLS 222
L L E S F+ +I S++R L L L+
Sbjct: 179 LHLSE---SAFLLEIFADILSSVRYLELRDTNLA 209
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFN---IIGGTIPSRIGNLSKLVNLGIGFSNLQGQI 177
++ SFT IP+ L + +++L FN IG NL L+ + ++G
Sbjct: 13 RSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 178 LTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK 237
+G+L E+L L +N+LS +S+++ LNL+GN +++ +L N++
Sbjct: 70 FYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 238 YLTLGANNLFGTI 250
L +G F I
Sbjct: 127 TLRIGNVETFSEI 139
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 8/214 (3%)
Query: 87 QLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN--SFTGLIPNSLFNLSRLETLRA 144
+L L+ ++F NK +FS L L+ L L N SF G S F + L+ L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 145 QFNIIGGTIPSRIGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFIPP 203
FN + T+ S L +L +L SNL Q + +L+NL YL + + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN 438
Query: 204 TIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIG 262
IFN +S++ VL + GN + I L N+ +L L L P + + S+L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 263 LDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
L+ + N+F + L L VL +N++ T
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 37/240 (15%)
Query: 34 ISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN------------------ 75
IS S +T+L L+ G + T L NL+ L LDIS N
Sbjct: 141 ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 200
Query: 76 --NFHGHLLKELGQLHRLRVVSFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
N + LG L L +S N+L G+ +S L+ L L L NN + L P
Sbjct: 201 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP- 255
Query: 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLV 191
L L++L L+ N I P + L+ L NL + + L+ ++ I NL+NL YL
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 310
Query: 192 LGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
L NN+S P + +++ ++ L N++S S++ + L NI +L+ G N + P
Sbjct: 311 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 365
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 37/240 (15%)
Query: 34 ISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN------------------ 75
IS S +T+L L G + T L NL+ L LDIS N
Sbjct: 146 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205
Query: 76 --NFHGHLLKELGQLHRLRVVSFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
N + LG L L +S N+L G+ +S L+ L L L NN + L P
Sbjct: 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP- 260
Query: 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLV 191
L L++L L+ N I P + L+ L NL + + L+ ++ I NL+NL YL
Sbjct: 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 315
Query: 192 LGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
L NN+S P + +++ ++ L N++S S++ + L NI +L+ G N + P
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 370
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 37/240 (15%)
Query: 34 ISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN------------------ 75
IS S +T+L L G + T L NL+ L LDIS N
Sbjct: 145 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 204
Query: 76 --NFHGHLLKELGQLHRLRVVSFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
N + LG L L +S N+L G+ +S L+ L L L NN + L P
Sbjct: 205 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP- 259
Query: 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLV 191
L L++L L+ N I P + L+ L NL + + L+ ++ I NL+NL YL
Sbjct: 260 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 314
Query: 192 LGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
L NN+S P + +++ ++ L N++S S++ + L NI +L+ G N + P
Sbjct: 315 LYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 37/240 (15%)
Query: 34 ISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN------------------ 75
IS S +T+L L+ G + T L NL+ L LDIS N
Sbjct: 141 ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 200
Query: 76 --NFHGHLLKELGQLHRLRVVSFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
N + LG L L +S N+L G+ +S L+ L L L NN + L P
Sbjct: 201 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP- 255
Query: 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLV 191
L L++L L+ N I P + L+ L NL + + L+ ++ I NL+NL YL
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 310
Query: 192 LGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
L NN+S P + +++ ++ L N++S S++ + L NI +L+ G N + P
Sbjct: 311 LYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 365
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 8/214 (3%)
Query: 87 QLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN--SFTGLIPNSLFNLSRLETLRA 144
+L L+ ++F NK +FS L L+ L L N SF G S F L+ L
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404
Query: 145 QFNIIGGTIPSRIGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFIPP 203
FN + T+ S L +L +L SNL Q + +L+NL YL + + +
Sbjct: 405 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN 462
Query: 204 TIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIG 262
IFN +S++ VL + GN + I L N+ +L L L P + + S+L
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 263 LDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
L+ + N+F + L L VL +N++ T
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 178 LTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNI 236
++ + L NL YL+L N L +P +F+ ++ ++ L L+ NQL LP + L N+
Sbjct: 78 ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNL 135
Query: 237 KYLTLGANNLFGTIPNSITNA-SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295
YL L N L ++P + + +NL LD +N F L L LSL N L
Sbjct: 136 TYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 296 TESSSV-DR 303
+ V DR
Sbjct: 195 SVPDGVFDR 203
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 149 IGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGN-----LQNLEYLVLGENNLSGFIPP 203
+GG I L +L NL + L G L + N L NL+ LVL EN L +P
Sbjct: 70 LGGNKLHDISALKELTNLT--YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPD 126
Query: 204 TIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNA-SNLI 261
+F+ ++ + L L NQL LP + L N+ L L NN ++P + + + L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQLK 184
Query: 262 GLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSV---DRW 304
L N F L L+ + L+ N S + RW
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRW 230
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 233 LPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN-TFGNLRHLSVLSLMM 291
LPN++YL LG N L +++ +NL L T N +PN F L +L L L+
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVE 118
Query: 292 NNLTT 296
N L +
Sbjct: 119 NQLQS 123
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 72 ISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
I E++F LG L L +YN LS SSW LS L L L N + L
Sbjct: 65 IEEDSFSS-----LGSLEHL---DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 116
Query: 132 SLF-NLSRLETLRA-QFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEY 189
SLF +L++L+ LR + L+ L L I S+LQ + ++QN+ +
Sbjct: 117 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 176
Query: 190 LVL 192
L+L
Sbjct: 177 LIL 179
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 156 RIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215
R NL LV G + ++ + +G+L E+L L N LS +S++ LN
Sbjct: 48 RCVNLQALVLTSNGINTIEEDSFSSLGSL---EHLDLSYNYLSNLSSSWFKPLSSLTFLN 104
Query: 216 LLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP-NSITNASNLIGLDFTSNSFSGHI 274
LLGN +++ L ++ L +G + F I + L L+ ++ +
Sbjct: 105 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 164
Query: 275 PNTFGNLRHLSVLSLMMNN 293
P + +++++S L L M
Sbjct: 165 PKSLKSIQNVSHLILHMKQ 183
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 21/245 (8%)
Query: 72 ISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPN 131
I E++F LG L L +YN LS SSW LS L L L N + L
Sbjct: 91 IEEDSFSS-----LGSLEHL---DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142
Query: 132 SLF-NLSRLETLRA-QFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEY 189
SLF +L++L+ LR + L+ L L I S+LQ + ++QN+ +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202
Query: 190 LVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSG-HLPS-TIGHSLPNIKYLT-----LG 242
L+L + + S++ L L L H + G + IK T +
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 243 ANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVD 302
+LF + + S L+ L+F+ N F L L + L N +D
Sbjct: 263 DESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321
Query: 303 ---RW 304
RW
Sbjct: 322 YLSRW 326
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 156 RIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215
R NL LV G + ++ + +G+ LE+L L N LS +S++ LN
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGS---LEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 216 LLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP-NSITNASNLIGLDFTSNSFSGHI 274
LLGN +++ L ++ L +G + F I + L L+ ++ +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 275 PNTFGNLRHLSVLSLMMNN 293
P + +++++S L L M
Sbjct: 191 PKSLKSIQNVSHLILHMKQ 209
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 8/210 (3%)
Query: 99 NKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLR----AQFNIIGGTIP 154
N++S ++ L IL L +N+ G+ + L+ LE L AQ ++ T
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 155 SRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVL 214
+G+L L G L + + LQ YL L +NNL T ++ + L
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQ---YLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 215 NLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI 274
L GN++ +P L ++ L L N++ P++ + L+ L +N+ S
Sbjct: 158 FLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 275 PNTFGNLRHLSVLSLMMNNLTTESSSVDRW 304
LR L L L N + + W
Sbjct: 217 AEVLVPLRSLQYLRLNDNPWVCDCRARPLW 246
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 61 LGNLSFLVSLDISEN--------------------NFHGHLLKELGQLHRLRVVSFAYNK 100
L NL+ L LDIS N N + LG L L +S N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 101 LS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIG 158
L G+ +S L+ L L L NN + L P L L++L L+ N I P +
Sbjct: 229 LKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 159 NLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG 218
L+ L NL + + L+ ++ I NL+NL YL L NN+S P + +++ ++ L
Sbjct: 281 GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 336
Query: 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
N++S S++ + L NI +L+ G N + P
Sbjct: 337 NKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 61 LGNLSFLVSLDISEN--------------------NFHGHLLKELGQLHRLRVVSFAYNK 100
L NL+ L LDIS N N + LG L L +S N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 101 LS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIG 158
L G+ +S L+ L L L NN + L P L L++L L+ N I P +
Sbjct: 229 LKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 159 NLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG 218
L+ L NL + + L+ ++ I NL+NL YL L NN+S P + +++ ++ L
Sbjct: 281 GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 336
Query: 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
N++S S++ + L NI +L+ G N + P
Sbjct: 337 NKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 61 LGNLSFLVSLDISEN--------------------NFHGHLLKELGQLHRLRVVSFAYNK 100
L NL+ L LDIS N N + LG L L +S N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 101 LS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIG 158
L G+ +S L+ L L L NN + L P L L++L L+ N I P +
Sbjct: 229 LKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 159 NLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG 218
L+ L NL + + L+ ++ I NL+NL YL L NN+S P + +++ ++ L
Sbjct: 281 GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 336
Query: 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
N++S S++ + L NI +L+ G N + P
Sbjct: 337 NKVSDV--SSLAN-LTNINWLSAGHNQISDLTP 366
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 2/207 (0%)
Query: 99 NKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNI-IGGTIPSRI 157
N++S ++ L IL L +N + + L+ LE L N + P+
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 158 GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLL 217
L +L L + LQ L L+YL L +N L T ++ + L L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 218 GNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNT 277
GN++S +P L ++ L L N + P++ + L+ L +N+ S
Sbjct: 161 GNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Query: 278 FGNLRHLSVLSLMMNNLTTESSSVDRW 304
LR L L L N + + W
Sbjct: 220 LAPLRALQYLRLNDNPWVCDCRARPLW 246
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 43/166 (25%)
Query: 64 LSFLVSLDISEN---------NFHGHLLKELGQLHRLRVVSFAYNKL-SGSFSSWIGVLS 113
L+ L LD+S+N FHG LG+LH L + +L G F L+
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRCGLQELGPGLFRG----LA 128
Query: 114 KLQILRLQNNSFTGL-----------------------IPNSLFN-LSRLETLRAQFNII 149
LQ L LQ+N+ L +P F L L+ L N +
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 150 GGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGEN 195
P +L +L+ L + +NL + L+ L+YL L +N
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 2/207 (0%)
Query: 99 NKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNI-IGGTIPSRI 157
N++S ++ L IL L +N + + L+ LE L N + P+
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 158 GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLL 217
L +L L + LQ L L+YL L +N L T ++ + L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 218 GNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNT 277
GN++S +P L ++ L L N + P++ + L+ L +N+ S
Sbjct: 162 GNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 278 FGNLRHLSVLSLMMNNLTTESSSVDRW 304
LR L L L N + + W
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLW 247
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 43/166 (25%)
Query: 64 LSFLVSLDISEN---------NFHGHLLKELGQLHRLRVVSFAYNKL-SGSFSSWIGVLS 113
L+ L LD+S+N FHG LG+LH L + +L G F L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRCGLQELGPGLFRG----LA 129
Query: 114 KLQILRLQNNSFTGL-----------------------IPNSLFN-LSRLETLRAQFNII 149
LQ L LQ+N+ L +P F L L+ L N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 150 GGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGEN 195
P +L +L+ L + +NL + L+ L+YL L +N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 6/202 (2%)
Query: 99 NKLSGSFSSWIGVLSKLQILRLQNN--SFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSR 156
NKL L++L L L +N SF G S F + L+ L FN + T+ S
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96
Query: 157 IGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVL 214
L +L +L SNL Q + +L+NL YL + + + IFN +S++ VL
Sbjct: 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL 155
Query: 215 NLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI 274
+ GN + I L N+ +L L L P + + S+L L+ + N+F
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 275 PNTFGNLRHLSVLSLMMNNLTT 296
+ L L VL +N++ T
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMT 237
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 104/272 (38%), Gaps = 34/272 (12%)
Query: 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKL 101
+T LNL LR P + S L LD N+ L EL Q L L+V++ +N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHNEL 85
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLS 161
S + L L L +NS + N N L L N + T
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST--------- 136
Query: 162 KLVNLGIGFSN---------------LQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIF 206
LG G L+ + L +GN +L L L N L F P
Sbjct: 137 ---KLGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQ 192
Query: 207 NISTIRVLNLLGNQLSGHLPSTIGHSLPN--IKYLTLGANNLFGTIPNSIT--NASNLIG 262
I + L L QL+ HL + L N I+ L+L N L T ++ + +NL
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 263 LDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNL 294
LD + N+ +F L L LSL NN+
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 186 NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANN 245
N+ L L N L P S + +L+ N +S P + LP +K L L N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNE 84
Query: 246 LFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
L + +NL LD SNS N F N ++L L L N L++
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 161 SKLVNLGIGFSNLQGQILTEIGN-----LQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215
+ L L + ++NL ++GN L +L YL L NN+ P + + +S +R L+
Sbjct: 248 TNLTQLDLSYNNLH-----DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 216 LLGNQLSGHLPSTIGHSLPNI-----------KYLTLGANNLFGTIPNSITNASNL--IG 262
L + S H PNI +YL + NN+ T N+ T +L +
Sbjct: 303 -LKRAFTKQSVSLASH--PNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLS 359
Query: 263 LDFTSNSFSGHIPNTFGNLRHLSVLSL 289
L T S TF +L H +L+L
Sbjct: 360 LSKTFTSLQTLTNETFVSLAHSPLLTL 386
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 27/233 (11%)
Query: 88 LHRLRVVSFAYNKLSGSFS--SWIGV-------LSKLQILRLQNNSFTGLIPNSLFNLSR 138
L L V+ N++ + W G+ LS + L+L NSF L+P+ L R
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPS----LQR 458
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198
L R + + PS L L L + +N+ + L+ LE L L NNL+
Sbjct: 459 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Query: 199 GFIP------PTIF--NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI 250
P F +S + +LNL N +P + L +K + LG NNL T+
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTL 575
Query: 251 PNSI-TNASNLIGLDFTSNSFSGHIPNTFG-NLRHLSVLSLMMNNLTTESSSV 301
P S+ N +L L+ N + FG R+L+ L + N S+
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKL 101
+T LNL LR + S L SLD+ N L EL Q L L+V++ +N+L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNEL 85
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGT 152
S + L L L +NS + N L TL N + T
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 27/233 (11%)
Query: 88 LHRLRVVSFAYNKLSGSFS--SWIGV-------LSKLQILRLQNNSFTGLIPNSLFNLSR 138
L L V+ N++ + W G+ LS + L+L NSF L+P+ L R
Sbjct: 414 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPS----LQR 468
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198
L R + + PS L L L + +N+ + L+ LE L L NNL+
Sbjct: 469 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Query: 199 GFIP------PTIF--NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI 250
P F +S + +LNL N +P + L +K + LG NNL T+
Sbjct: 528 RLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTL 585
Query: 251 PNSI-TNASNLIGLDFTSNSFSGHIPNTFG-NLRHLSVLSLMMNNLTTESSSV 301
P S+ N +L L+ N + FG R+L+ L + N S+
Sbjct: 586 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 638
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKL 101
+T LNL LR + S L SLD+ N L EL Q L L+V++ +N+L
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNEL 95
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGT 152
S + L L L +NS + N L TL N + T
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 27/233 (11%)
Query: 88 LHRLRVVSFAYNKLSGSFS--SWIGV-------LSKLQILRLQNNSFTGLIPNSLFNLSR 138
L L V+ N++ + W G+ LS + L+L NSF L+P+ L R
Sbjct: 409 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPS----LQR 463
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198
L R + + PS L L L + +N+ + L+ LE L L NNL+
Sbjct: 464 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Query: 199 GFIP------PTIF--NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI 250
P F +S + +LNL N +P + L +K + LG NNL T+
Sbjct: 523 RLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTL 580
Query: 251 PNSI-TNASNLIGLDFTSNSFSGHIPNTFG-NLRHLSVLSLMMNNLTTESSSV 301
P S+ N +L L+ N + FG R+L+ L + N S+
Sbjct: 581 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 633
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKL 101
+T LNL LR + S L SLD+ N L EL Q L L+V++ +N+L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNEL 90
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGT 152
S + L L L +NS + N L TL N + T
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSF-TGLIP--NSLFNLSRLETLRA 144
LH L+V++ +++ L S L LQ L LQ N F G I NSL L RLE L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 145 QFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPT 204
F + +L + ++ + + L + + +L+ + YL L N++S +P
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 205 IFNISTIRVLNLLGNQLS 222
+ +S R +NL N L
Sbjct: 543 LPILSQQRTINLRQNPLD 560
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 200 FIPPTIF-NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNAS 258
++PP +F N+ + VL L N LS LP I H+ P + L++ NNL ++ +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 259 NLIGLDFTSNSFS 271
+L L +SN +
Sbjct: 172 SLQNLQLSSNRLT 184
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 64 LSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN 123
L+ L L + + N + L LH L V+ + ++ L +L++L + +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 124 SF-TGLIPNSLF--NLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG-FSNLQGQILT 179
+ + PN L+ NL+ L + + L + +NL S ++G +L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-RFLNLSYNPISTIEGSMLH 269
Query: 180 EIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYL 239
E+ LQ ++ LV G+ L+ P ++ +RVLN+ GNQL+ L ++ HS+ N++ L
Sbjct: 270 ELLRLQEIQ-LVGGQ--LAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETL 325
Query: 240 TLGANNL 246
L +N L
Sbjct: 326 ILDSNPL 332
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 1/180 (0%)
Query: 110 GVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG 169
G+ ++ ++L L N L + + LE L NI+ P NL L LG+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 170 FSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTI 229
+ L+ L L NL L + EN + + ++ ++ L + N L ++
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147
Query: 230 GHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSL 289
L +++ LTL NL ++++ LI L + + +F L L VL +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 27/144 (18%)
Query: 152 TIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTI 211
+P I ++L++LG Q E + +LE L L EN +S P N+ +
Sbjct: 25 AVPEGIPTETRLLDLGKNRIKTLNQ--DEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 212 RVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271
R L L N+L K + LG T SNL LD + N
Sbjct: 83 RTLGLRSNRL---------------KLIPLGV----------FTGLSNLTKLDISENKIV 117
Query: 272 GHIPNTFGNLRHLSVLSLMMNNLT 295
+ F +L +L L + N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV 141
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 160 LSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLG 218
L+KL L + ++ LQ +L L L L N L+ +P +F+ ++ + L L G
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGG 116
Query: 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278
NQL LPS + L +K L L N L + +NL L ++N F
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 279 GNLRHLSVLSLMMNNL 294
L L ++L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFN 147
L +L ++ YN+L + L++L L L NN L +L++L+ L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 148 IIGGTIPSRI-GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIF 206
+ ++PS + L+KL L + + LQ L NL+ L L N L +P F
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAF 175
Query: 207 N-ISTIRVLNLLGNQLS 222
+ + ++ + L GNQ
Sbjct: 176 DRLGKLQTITLFGNQFD 192
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKL 101
++T LNL L+ G +L+ L +L ++ N L L +L + N+L
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIP----SRI 157
S L+KL+ LRL N + + L+ L+TL N + ++P R+
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRL 178
Query: 158 GNLSKLVNLGIGFS 171
G L + G F
Sbjct: 179 GKLQTITLFGNQFD 192
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 183 NLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTL 241
+L NL+ L LG N L G +P +F+ ++ + VL+L NQL+ LPS + L ++K L +
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFM 119
Query: 242 GANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSV 301
N L +P I ++L L N F L L+ L N E +
Sbjct: 120 CCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 212 RVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNA-SNLIGLDFTSNSF 270
++L L NQ++ P SL N+K L LG+N L G +P + ++ + L LD +N
Sbjct: 43 QILYLHDNQITKLEPGVFD-SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 271 SGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDR 303
+ F L HL L + N LT ++R
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIER 133
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 160 LSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLG 218
L+KL L + ++ LQ +L L L L N L+ +P +F+ ++ + L L G
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGG 116
Query: 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278
NQL LPS + L +K L L N L + +NL L ++N F
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 279 GNLRHLSVLSLMMNNL 294
L L ++L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFN 147
L +L ++ YN+L + L++L L L NN L +L++L+ L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 148 IIGGTIPSRI-GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIF 206
+ ++PS + L+KL L + + LQ L NL+ L L N L +P F
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAF 175
Query: 207 N-ISTIRVLNLLGNQLS 222
+ + ++ + L GNQ
Sbjct: 176 DRLGKLQTITLFGNQFD 192
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKL 101
++T LNL L+ G +L+ L +L ++ N L L +L + N+L
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIP----SRI 157
S L+KL+ LRL N + + L+ L+TL N + ++P R+
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRL 178
Query: 158 GNLSKLVNLGIGFSNLQGQIL 178
G L + G F + +IL
Sbjct: 179 GKLQTITLFGNQFDCSRCEIL 199
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 7/159 (4%)
Query: 96 FAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLF--NLSRLETLRAQFNIIGGTI 153
F N + S L +LQ L LQ N +L N+S LETL N +
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 154 PSRIGNLSK-LVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIR 212
R ++ ++ L + + L G + + ++ L L N + IP + ++ ++
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQ 476
Query: 213 VLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251
LN+ NQL +P + L +++Y+ L N T P
Sbjct: 477 ELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 200 FIPPTIF-NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNAS 258
++PP +F N+ + VL L N LS LP I H+ P + L++ NNL ++ +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 259 NLIGLDFTSNSFS 271
+L L +SN +
Sbjct: 166 SLQNLQLSSNRLT 178
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 115/291 (39%), Gaps = 39/291 (13%)
Query: 16 SALANNWSIFYPI-CSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSL---D 71
+L +S P C C H RV + D+GL+ +P + + L+ L D
Sbjct: 17 DSLPPTYSAMCPFGCHC--------HLRVVQCS--DLGLKA-VPKEISPDTTLLDLQNND 65
Query: 72 ISE---NNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGL 128
ISE ++F G L L + NK+S L KLQ L + N +
Sbjct: 66 ISELRKDDFKG--------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 129 IPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLE 188
PN S L LR N I L + + +G + L+ E G L+
Sbjct: 118 PPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-EPGAFDGLK 173
Query: 189 --YLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSG-HLPSTIGHSLPNIKYLTLGANN 245
YL + E L+G IP + T+ L+L N++ L + +S + L LG N
Sbjct: 174 LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYS--KLYRLGLGHNQ 228
Query: 246 LFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
+ S++ L L +N S +P +L+ L V+ L NN+T
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 112 LSKLQILRLQNNSFTGLIPNSLFN-LSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGF 170
L LQ L+++ + +I N+ F LS L L+ +N L+ L L +
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112
Query: 171 SNLQGQILTEIGN----LQNLEYLVLGENNLSGFIPPTIF-NISTIRVLNLLGNQLS 222
NL G +L+ GN L +LE LVL +NN+ P + F N+ VL+L N++
Sbjct: 113 CNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 112 LSKLQILRLQNNSFTGLIPNSLFN-LSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGF 170
L LQ L+++ + +I N+ F LS L L+ +N L+ L L +
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112
Query: 171 SNLQGQILTEIGN----LQNLEYLVLGENNLSGFIPPTIF-NISTIRVLNLLGNQLS 222
NL G +L+ GN L +LE LVL +NN+ P + F N+ VL+L N++
Sbjct: 113 CNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 26/138 (18%)
Query: 110 GVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG 169
G+ + L L N FT L+P L N L + N RI LS
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN--------RISTLS-----NQS 73
Query: 170 FSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTI 229
FSN+ Q+LT L+L N L P T + ++R+L+L GN +S +P
Sbjct: 74 FSNMT-QLLT----------LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGA 121
Query: 230 GHSLPNIKYLTLGANNLF 247
+ L + +L +GAN L+
Sbjct: 122 FNDLSALSHLAIGANPLY 139
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 211 IRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLG--ANNLFGTIPN-SITNASNLIGLDFTS 267
+ L L GNQ + + L N K+LTL +NN T+ N S +N + L+ L +
Sbjct: 33 VTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 268 NSFSGHIPNTFGNLRHLSVLSLMMNNLT 295
N P TF L+ L +LSL N+++
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 242 GANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHL 284
GA+NL+ + N T AS L L F SF P FG LRH+
Sbjct: 119 GADNLWSALENPXTAASILPKLVFWRASF----PQAFGRLRHV 157
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 118 LRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGI--------- 168
L L++N T L P L NL+++ L N + S I L + L +
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 169 ---GFSNLQ------GQI--LTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLL 217
G SNLQ QI ++ + L NL+YL +G N ++ P + N+S + L
Sbjct: 130 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRAD 187
Query: 218 GNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNL 260
N++S P SLPN+ + L N + P + N SNL
Sbjct: 188 DNKISDISPL---ASLPNLIEVHLKDNQISDVSP--LANLSNL 225
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N +L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------QLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 96/251 (38%), Gaps = 58/251 (23%)
Query: 70 LDISENNFHGHLLKELGQLHRLRVVSF-----------AYNKLSGS-----FSSWIGV-- 111
L++ ENN LH L V+ A+N L+ F +W+ V
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 112 ------LSKLQILRLQNNSFTGLIPNSLFN----LSRLETLRAQFNIIGGTIPSRIGNLS 161
LSKL+ L L+NN IP+ FN L RL+ +G L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLD----------------LGELK 182
Query: 162 KLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQL 221
KL + G L NL+YL LG N+ P + + + L + GN
Sbjct: 183 KLEYISEG----------AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230
Query: 222 SGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNL 281
P + H L ++K L + + + N+ ++L+ L+ N+ S + F L
Sbjct: 231 PEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 282 RHLSVLSLMMN 292
R+L L L N
Sbjct: 290 RYLVELHLHHN 300
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N +L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------QLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N +L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------QLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N +L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------QLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 174 QGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTIGHS 232
QG+ G YL L N+L +P +F+ ++++ L L GN+L LP+ + +
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNK 74
Query: 233 LPNIKYLTLGANNLFGTIPNSITNA-SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMM 291
L ++ YL L N L ++PN + + + L L +N F L L L L
Sbjct: 75 LTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 292 NNLTTESSSV-DR 303
N L + V DR
Sbjct: 134 NQLKSVPDGVFDR 146
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLN-------- 170
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 171 --GLENLDTLLLQENSL 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------DLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 85/216 (39%), Gaps = 38/216 (17%)
Query: 110 GVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG 169
G+ + ++L L N + NS +L LE L+ N I IG + L NL
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNT- 116
Query: 170 FSNLQGQILTEIGN-----LQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSG 223
L LT I N L L+ L L N + IP FN I ++R L+L +
Sbjct: 117 -LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS 174
Query: 224 HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIP-------- 275
++ L N++YL L NL IPN +T L LD + N S P
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 276 ----------------NTFGNLRHLSVLSLMMNNLT 295
N F NL+ L ++L NNLT
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 26/230 (11%)
Query: 63 NLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122
+L L L +S N+ + L L + N+L+ + LSKL+ L L+N
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIG 182
N IP+ FN R+ +LR +G L +L + G
Sbjct: 146 NPIES-IPSYAFN--RIPSLRRL----------DLGELKRLSYISEG----------AFE 182
Query: 183 NLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLG 242
L NL YL L NL P + + + L+L GN LS P + L +++ L +
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMI 239
Query: 243 ANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292
+ + N+ N +L+ ++ N+ + + F L HL + L N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 190 LVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYL-TLGANNLF 247
L LG NN ++ ++ R ++++ N++S PS +G P +YL G N
Sbjct: 7 LDLGNNN-------SVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQT 58
Query: 248 GTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
I N++ N +IGLD+ H P+ +H + + +++ T
Sbjct: 59 SNIKNTVANLKRIIGLDY-------HHPDFEQESKHFTSKLVELDDKKT 100
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 157 IGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNL 216
G L LV L + + L G +++ L LGEN + + ++ LNL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 217 LGNQLSGHLPSTIGHSLPNIKYLTLGAN 244
NQ+S +P + H L ++ L L +N
Sbjct: 110 YDNQISCVMPGSFEH-LNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 181 IGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLT 240
G L +L L L N L+G P S I+ L L N++ + + + L +K L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 241 LGANNLFGTIPNSITNASNLIGLDFTSNSF 270
L N + +P S + ++L L+ SN F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 233 LPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292
LP++ L L N L G PN+ AS++ L N F L L L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 293 NLTT 296
++
Sbjct: 113 QISC 116
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 190 LVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYL-TLGANNLF 247
L LG NN ++ ++ R ++++ N++S PS +G P +YL G N
Sbjct: 7 LDLGNNN-------SVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQT 58
Query: 248 GTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
I N++ N +IGLD+ H P+ +H + + +++ T
Sbjct: 59 SNIKNTVANLKRIIGLDY-------HHPDFEQESKHFTSKLVELDDKKT 100
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 160 LSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGN 219
L L + G SNL+ + NL+NLE L LG N++S P F ++VL+ N
Sbjct: 104 LKHLFLIQTGISNLE---FIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNN 160
Query: 220 QL 221
+
Sbjct: 161 AI 162
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 190 LVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYL-TLGANNLF 247
L LG NN ++ ++ R ++++ N++S PS +G P +YL G N
Sbjct: 6 LDLGNNN-------SVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQT 57
Query: 248 GTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
I N++ N +IGLD+ H P+ +H + + +++ T
Sbjct: 58 SNIKNTVANLKRIIGLDY-------HHPDFEQESKHFTSKLVELDDKKT 99
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 190 LVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYL-TLGANNLF 247
L LG NN ++ ++ R ++++ N++S PS +G P +YL G N
Sbjct: 9 LDLGNNN-------SVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQT 60
Query: 248 GTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
I N++ N +IGLD+ H P+ +H + + +++ T
Sbjct: 61 SNIKNTVANLKRIIGLDY-------HHPDFEQESKHFTSKLVELDDKKT 102
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 167 GIGFSNLQ-GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHL 225
+ SNLQ I I L L L N+L+ +P I N+S +RVL+L N+L+ L
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 226 PSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNL 260
P+ +G +KY +N+ T+P N NL
Sbjct: 286 PAELGSCF-QLKYFYF-FDNMVTTLPWEFGNLCNL 318
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 109 IGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGI 168
I LS L++L L +N T L P L + +L+ F+ + T+P GNL L LG+
Sbjct: 266 IKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGV 323
Query: 169 GFSNLQGQILTEIGNLQNLEYLVLGENNLSGFI 201
+ L+ Q L +L E +++G I
Sbjct: 324 EGNPLEKQFLK-----------ILTEKSVTGLI 345
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 115 LQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQ 174
L L L NS T L P + NLS L L N + ++P+ +G+ +L F N+
Sbjct: 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNMV 305
Query: 175 GQILTEIGNLQNLEYLVLGENNLS 198
+ E GNL NL++L + N L
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 29 CSCVG--ISCGSR---------HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNF 77
CSC G I C S+ T L L L+ G L+ L L +S+N
Sbjct: 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64
Query: 78 HGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFN-L 136
+L +L ++ NKL + L++L+ L L N +P+ +F+ L
Sbjct: 65 QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRL 123
Query: 137 SRLETLRAQFNIIGGTIPSRIGNLSKLVN 165
+ L+ + N + P RI LS+ +N
Sbjct: 124 TSLQKIWLHTNPWDCSCP-RIDYLSRWLN 151
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 GNLSFLVSLDISENNFHGHLLKELGQ-LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
G L L +LD+S N L LGQ L L V+ ++N+L+ + L +LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTE 180
+ N L P L +LE L N L L G N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLN-------- 169
Query: 181 IGNLQNLEYLVLGENNL 197
L+NL+ L+L EN+L
Sbjct: 170 --GLENLDTLLLQENSL 184
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 61 LGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120
+ L + +LD++ + L L L+V+ N+++ + S G L+ LQ L +
Sbjct: 103 IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISPLAG-LTNLQYLSI 158
Query: 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNL-GIGFSNLQGQILT 179
N + L P L NLS+L TL+A N I S I L+ L NL + N Q ++
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKI-----SDISPLASLPNLIEVHLKNNQISDVS 211
Query: 180 EIGNLQNL 187
+ N NL
Sbjct: 212 PLANTSNL 219
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 70 LDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLI 129
L+IS+N ++ L +LR++ ++N++ S +L+ L L +N +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 130 PNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQ-NLE 188
+ NL L+ F+ + I GN+S+L LG+ ++L+ + I +L +
Sbjct: 86 CHPTVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 189 YLVLGE 194
LVLGE
Sbjct: 144 LLVLGE 149
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 80 HLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSR- 138
H+ K+L Q + +++ + N +S ++S I LSKL+IL + +N L S+F ++
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQE 70
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG-QILTEIGNLQNLEYLVLGENNL 197
LE L N + NL +L + F+ I E GN+ L++L L +L
Sbjct: 71 LEYLDLSHNKLVKISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 198 --SGFIPPTIFNISTIRVLNLLGN 219
S +P NIS +VL +LG
Sbjct: 128 EKSSVLPIAHLNIS--KVLLVLGE 149
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 30/191 (15%)
Query: 118 LRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQI 177
L NN T + + +L+ LETL Q N ++ LSK+ ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMN--------QLKELSKI-----------AEM 369
Query: 178 LTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSL-PNI 236
T++ +LQ L+ + +N++S + S + L L N S L TI L P I
Sbjct: 370 TTQMKSLQQLD---ISQNSVS--YDEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLPPRI 423
Query: 237 KYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296
K L L +N + +IP + L L+ SN F L L + L N
Sbjct: 424 KVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482
Query: 297 ESSSVD---RW 304
+D RW
Sbjct: 483 SCPRIDYLSRW 493
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 26/110 (23%)
Query: 169 GFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPST 228
G SNL+ + NL+NLE L LG N++S P F ++VL+ N
Sbjct: 115 GISNLE---FIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNA-------- 163
Query: 229 IGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278
I Y++ NS+ A+NL L+F N G P F
Sbjct: 164 -------IHYISRKDT-------NSLEQATNL-SLNFNGNDIKGIEPGAF 198
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 47/277 (16%)
Query: 27 PICSCVGISCGSRHQ-RVTALNLLDMGLRGTIPGHLGNLSFLVSL------DISENNFHG 79
P +G C R Q + + D+GL +P L + L+ L +I + +F
Sbjct: 16 PEIEPMGPVCPFRCQCHLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDF-- 72
Query: 80 HLLKELGQLHRLRVVSFAYNKLS-GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSR 138
K L LH L +++ +K+S G+F+ + KL+ L L N L P +
Sbjct: 73 ---KNLKNLHTLILINNKISKISPGAFAPLV----KLERLYLSKNQLKEL-PEKM--PKT 122
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198
L+ LR N I S L++++ + +G + L+ + E G Q ++ L
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKL-------- 173
Query: 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNAS 258
S IR+ + + LP P++ L L N + S+ +
Sbjct: 174 ----------SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLN 216
Query: 259 NLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295
NL L + NS S + N HL L L N L
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 47/277 (16%)
Query: 27 PICSCVGISCGSRHQ-RVTALNLLDMGLRGTIPGHLGNLSFLVSL------DISENNFHG 79
P +G C R Q + + D+GL +P L + L+ L +I + +F
Sbjct: 16 PEIEPMGPVCPFRCQCHLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDF-- 72
Query: 80 HLLKELGQLHRLRVVSFAYNKLS-GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSR 138
K L LH L +++ +K+S G+F+ + KL+ L L N L P +
Sbjct: 73 ---KNLKNLHTLILINNKISKISPGAFAPLV----KLERLYLSKNQLKEL-PEKM--PKT 122
Query: 139 LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198
L+ LR N I S L++++ + +G + L+ + E G Q ++ L
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKL-------- 173
Query: 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNAS 258
S IR+ + + LP P++ L L N + S+ +
Sbjct: 174 ----------SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLN 216
Query: 259 NLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295
NL L + NS S + N HL L L N L
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 31/194 (15%)
Query: 112 LSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSR-IGNLSKLVNLGIGF 170
L L+IL+L N + + L L TL F+ T+P++ LSKL L +
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWL-- 114
Query: 171 SNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLSGHLPSTI 229
NN IP FN + ++R L+L + ++
Sbjct: 115 -----------------------RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA 151
Query: 230 GHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSL 289
L N++YL LG NL IPN +T L L+ + N P +F L L L L
Sbjct: 152 FEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 290 MMNNLTT-ESSSVD 302
M + T E ++ D
Sbjct: 210 MHAQVATIERNAFD 223
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFN 147
L L+V++ AYNK++ L LQ+L L N L ++ + L ++ + Q N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 148 IIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNL 197
I L KL L +L+ LT I + ++ + L N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTL-----DLRDNALTTIHFIPSIPDIFLSGNKL 393
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 223 GHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLR 282
G P + S+ I+Y+ L +PN N +LIGL+F ++F ++ N + ++
Sbjct: 337 GRTPKEVYESV--IEYIEKTKPEL---VPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQ 391
Query: 283 HLSV--LSLMMNNLTTESSS 300
+S NNL S+
Sbjct: 392 RGDCFNISFGFNNLKDSQSA 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,961,143
Number of Sequences: 62578
Number of extensions: 349162
Number of successful extensions: 1159
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 270
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)