Query 037331
Match_columns 330
No_of_seqs 177 out of 3457
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-36 8.8E-41 300.3 22.6 313 2-323 32-369 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-30 4.2E-35 259.5 17.8 278 41-324 140-442 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.8E-28 3.9E-33 216.2 2.0 279 41-325 125-431 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.6E-28 5.7E-33 215.2 0.9 286 39-327 100-409 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.8E-25 8.2E-30 197.1 -4.1 269 41-321 78-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.1E-24 4.5E-29 192.4 -4.8 276 40-326 54-332 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 5.3E-24 1.2E-28 180.5 -10.0 266 41-325 45-312 (565)
8 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.6E-23 175.9 20.4 261 43-320 591-903 (1153)
9 KOG4237 Extracellular matrix p 99.8 9.4E-22 2E-26 166.5 -4.1 276 41-322 67-358 (498)
10 PLN03210 Resistant to P. syrin 99.8 4.6E-18 9.9E-23 171.8 19.3 216 67-292 591-835 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 5.3E-22 1.1E-26 168.5 -9.4 245 41-297 68-312 (565)
12 PRK15370 E3 ubiquitin-protein 99.8 2.1E-18 4.5E-23 164.4 12.1 250 41-323 178-428 (754)
13 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-20 5.4E-25 164.0 -2.8 276 45-322 2-319 (319)
14 KOG0618 Serine/threonine phosp 99.7 7.6E-20 1.7E-24 169.7 -2.8 128 185-321 359-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 5.1E-17 1.1E-21 154.2 15.1 236 42-324 223-459 (788)
16 KOG0618 Serine/threonine phosp 99.7 2E-19 4.2E-24 167.1 -2.5 270 38-320 238-510 (1081)
17 PRK15370 E3 ubiquitin-protein 99.7 4.6E-17 9.9E-22 155.2 11.7 227 41-296 199-429 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 9.1E-19 2E-23 154.0 -1.4 254 41-294 23-319 (319)
19 PRK15387 E3 ubiquitin-protein 99.7 6E-16 1.3E-20 147.0 14.2 224 41-304 242-465 (788)
20 KOG0617 Ras suppressor protein 99.6 3.5E-18 7.5E-23 129.5 -4.0 165 85-256 29-194 (264)
21 KOG4237 Extracellular matrix p 99.6 2.6E-18 5.6E-23 145.9 -6.9 255 65-327 67-339 (498)
22 KOG0617 Ras suppressor protein 99.6 1.8E-17 4E-22 125.6 -4.4 164 111-281 31-195 (264)
23 PLN03150 hypothetical protein; 99.3 6.6E-12 1.4E-16 119.3 11.1 143 2-149 375-527 (623)
24 KOG3207 Beta-tubulin folding c 99.3 3.4E-13 7.3E-18 116.5 -1.0 208 86-297 118-341 (505)
25 KOG1259 Nischarin, modulator o 99.2 1.5E-12 3.3E-17 107.6 1.3 136 180-326 279-415 (490)
26 KOG1909 Ran GTPase-activating 99.2 6.6E-13 1.4E-17 111.7 -0.9 235 62-297 27-313 (382)
27 KOG0532 Leucine-rich repeat (L 99.2 5.6E-13 1.2E-17 118.7 -3.0 195 88-293 74-271 (722)
28 KOG3207 Beta-tubulin folding c 99.2 1.1E-12 2.3E-17 113.5 -1.5 212 110-327 118-343 (505)
29 KOG1909 Ran GTPase-activating 99.1 5.9E-12 1.3E-16 106.0 -1.7 231 41-271 30-311 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 6.8E-11 1.5E-15 93.1 4.1 106 161-271 19-126 (175)
31 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.3E-15 105.9 5.9 195 93-297 97-292 (394)
32 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.8E-15 105.3 6.3 181 86-275 113-294 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.5E-15 91.8 4.7 112 181-297 15-128 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 6.9E-12 1.5E-16 111.9 -3.1 180 112-301 74-253 (722)
35 KOG1259 Nischarin, modulator o 99.1 4.6E-11 1E-15 99.0 1.6 131 160-297 283-414 (490)
36 KOG4658 Apoptotic ATPase [Sign 99.0 6.6E-10 1.4E-14 108.4 7.9 127 42-171 524-652 (889)
37 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 103.8 8.2 107 211-322 420-527 (623)
38 KOG4658 Apoptotic ATPase [Sign 99.0 7E-10 1.5E-14 108.2 5.5 129 39-168 543-675 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.8E-14 70.1 4.2 61 234-294 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 7.2E-09 1.6E-13 67.2 4.4 61 209-270 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.7 3.2E-10 7E-15 93.9 -5.7 56 139-194 187-243 (419)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.8E-10 6.2E-15 94.2 -7.0 179 113-293 185-374 (419)
43 KOG2982 Uncharacterized conser 98.6 6.7E-09 1.5E-13 86.2 0.7 203 87-289 69-286 (418)
44 KOG0531 Protein phosphatase 1, 98.6 3.7E-09 8E-14 96.3 -1.3 218 63-295 70-290 (414)
45 KOG0531 Protein phosphatase 1, 98.5 7.6E-09 1.6E-13 94.2 -2.2 217 87-323 70-290 (414)
46 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.7E-14 99.5 -6.5 182 130-327 102-295 (1096)
47 KOG4341 F-box protein containi 98.5 2.2E-09 4.7E-14 92.9 -6.8 277 41-321 138-437 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.3 4.8E-08 1E-12 80.2 -2.1 189 109-297 88-318 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 7.6E-09 1.6E-13 95.4 -7.5 126 162-294 165-291 (1096)
50 KOG4579 Leucine-rich repeat (L 98.3 6.4E-08 1.4E-12 71.4 -2.5 107 187-297 29-138 (177)
51 KOG2982 Uncharacterized conser 98.2 1.6E-07 3.5E-12 78.2 -1.7 63 257-323 198-262 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.2 2.5E-07 5.4E-12 76.1 -1.1 231 41-272 30-317 (388)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.7E-11 50.7 2.6 39 258-297 1-39 (44)
54 PF08263 LRRNT_2: Leucine rich 98.0 3.1E-06 6.7E-11 50.2 1.8 35 2-37 6-43 (43)
55 PRK15386 type III secretion pr 97.9 6.3E-05 1.4E-09 67.0 9.2 136 110-268 49-187 (426)
56 KOG4579 Leucine-rich repeat (L 97.9 5.6E-07 1.2E-11 66.5 -3.3 130 164-297 30-161 (177)
57 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 6.9E-10 61.2 4.5 107 208-319 41-149 (233)
58 PF12799 LRR_4: Leucine Rich r 97.7 5.3E-05 1.1E-09 45.0 3.5 35 187-222 3-37 (44)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.5E-10 77.2 0.5 134 161-297 122-265 (699)
60 PF13306 LRR_5: Leucine rich r 97.6 0.00026 5.7E-09 53.1 7.3 83 60-145 7-89 (129)
61 KOG1644 U2-associated snRNP A' 97.6 0.00015 3.3E-09 57.4 5.5 105 184-291 41-149 (233)
62 PF13306 LRR_5: Leucine rich r 97.5 0.0006 1.3E-08 51.2 8.0 57 206-266 55-111 (129)
63 PRK15386 type III secretion pr 97.4 0.0016 3.5E-08 58.2 10.7 57 61-123 48-104 (426)
64 KOG3665 ZYG-1-like serine/thre 97.4 5.7E-05 1.2E-09 72.5 1.4 110 160-272 147-264 (699)
65 KOG4341 F-box protein containi 97.2 1.8E-06 4E-11 75.1 -9.7 253 41-295 164-439 (483)
66 KOG2739 Leucine-rich acidic nu 97.0 0.0003 6.5E-09 58.0 1.4 99 185-289 43-150 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00052 1.1E-08 56.6 2.3 113 207-322 41-158 (260)
68 KOG1947 Leucine rich repeat pr 96.7 6.9E-05 1.5E-09 69.7 -4.9 15 231-245 359-373 (482)
69 KOG2123 Uncharacterized conser 96.3 0.00018 3.9E-09 59.9 -4.5 80 235-322 20-100 (388)
70 KOG2123 Uncharacterized conser 96.3 0.00023 5.1E-09 59.2 -3.9 98 186-288 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.5E-07 29.1 0.9 12 260-271 2-13 (22)
72 KOG1947 Leucine rich repeat pr 94.0 0.011 2.3E-07 55.0 -1.0 64 183-246 241-307 (482)
73 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.9E-07 25.3 1.3 12 284-295 3-14 (17)
74 KOG3864 Uncharacterized conser 93.0 0.012 2.6E-07 46.9 -2.0 81 187-267 103-185 (221)
75 KOG3864 Uncharacterized conser 92.0 0.019 4.2E-07 45.8 -2.0 83 210-293 102-187 (221)
76 KOG4308 LRR-containing protein 89.4 0.00093 2E-08 61.6 -13.4 36 115-150 89-128 (478)
77 KOG0473 Leucine-rich repeat pr 88.4 0.0098 2.1E-07 48.6 -6.5 102 22-126 23-124 (326)
78 smart00369 LRR_TYP Leucine-ric 87.7 0.49 1.1E-05 24.1 1.8 18 210-228 3-20 (26)
79 smart00370 LRR Leucine-rich re 87.7 0.49 1.1E-05 24.1 1.8 18 210-228 3-20 (26)
80 KOG4308 LRR-containing protein 85.5 0.0027 5.9E-08 58.5 -12.7 180 67-247 89-303 (478)
81 PF13516 LRR_6: Leucine Rich r 85.3 0.38 8.2E-06 24.0 0.6 13 235-247 3-15 (24)
82 KOG0473 Leucine-rich repeat pr 84.3 0.029 6.3E-07 45.9 -5.8 83 208-294 41-123 (326)
83 smart00364 LRR_BAC Leucine-ric 84.2 0.7 1.5E-05 23.7 1.3 18 282-299 2-19 (26)
84 KOG3763 mRNA export factor TAP 72.1 1.6 3.6E-05 40.4 0.8 36 208-244 217-254 (585)
85 smart00365 LRR_SD22 Leucine-ri 71.1 3.3 7.1E-05 21.2 1.5 16 282-297 2-17 (26)
86 smart00368 LRR_RI Leucine rich 68.6 3.4 7.4E-05 21.5 1.3 15 282-296 2-16 (28)
87 KOG3763 mRNA export factor TAP 56.7 5.1 0.00011 37.3 1.0 67 183-249 216-285 (585)
88 smart00367 LRR_CC Leucine-rich 49.1 11 0.00024 18.9 1.1 11 282-292 2-12 (26)
89 KOG4242 Predicted myosin-I-bin 31.5 1.6E+02 0.0034 27.5 6.1 278 41-322 165-480 (553)
90 KOG1665 AFH1-interacting prote 30.5 60 0.0013 26.7 3.1 12 235-246 197-208 (302)
91 TIGR00864 PCC polycystin catio 27.0 38 0.00083 38.4 1.9 32 240-271 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-36 Score=300.30 Aligned_cols=313 Identities=33% Similarity=0.535 Sum_probs=192.4
Q ss_pred hHHHHHHhhcCCccchhcCCCcCCCCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccC
Q 037331 2 SALLAFKAHVLDYRSALANNWSIFYPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHL 81 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 81 (330)
.|+++||+.+.||.+++. +|+...+||.|.|+.|... .+++.|+++++.+.+..+..|..+++|+.|++++|.+...+
T Consensus 32 ~~l~~~~~~~~~~~~~~~-~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i 109 (968)
T PLN00113 32 ELLLSFKSSINDPLKYLS-NWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI 109 (968)
T ss_pred HHHHHHHHhCCCCcccCC-CCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC
Confidence 589999999988888887 5999999999999999754 68999999999998888888999999999999999887666
Q ss_pred chhh-ccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCC
Q 037331 82 LKEL-GQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNL 160 (330)
Q Consensus 82 ~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 160 (330)
+..+ ..+++|++|++++|.+.+..|. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 6544 3777777777777776654443 234555555555555555555555555555555555555554555555555
Q ss_pred CCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhc---------
Q 037331 161 SKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGH--------- 231 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--------- 231 (330)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 55555555555544444444555555555555555554444444445555555555555444444444330
Q ss_pred --------------CCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 232 --------------SLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 232 --------------~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 344455555555544444444444455555555555555444444455555555555555555443
Q ss_pred CCCCcccccccccceE-EEEecccccc
Q 037331 298 SSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 298 ~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
.+. .+..++.| .+++++|+++
T Consensus 348 --~p~---~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 348 --IPK---NLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred --CCh---HHhCCCCCcEEECCCCeeE
Confidence 332 22344555 6666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2e-30 Score=259.48 Aligned_cols=278 Identities=31% Similarity=0.506 Sum_probs=148.5
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.+.+..|..++++++|+.|++++|.+....+..+.++++|++|++++|.+.+..|..+..+.+|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 45555555555555555555566666666666666555555555556666666666666555555555555566666666
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 66555555555555555666666655555555555555555555555555555444444455555555555555555544
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC-------
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH------- 273 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------- 273 (330)
+|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 454445555555555555555444444333 344555555555544444444444444444444444444433
Q ss_pred -----------------CCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccc
Q 037331 274 -----------------IPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 274 -----------------~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~ 324 (330)
+|..+..+++|+.|++++|.+++. .+. .+..++.| .+++++|+++.
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~--~p~---~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE--LPS---EFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE--CCh---hHhcCCCCCEEECcCCcccC
Confidence 333344444455555555544443 331 23445556 66666666653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-28 Score=216.24 Aligned_cols=279 Identities=23% Similarity=0.200 Sum_probs=154.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.|+|.+|.++..-...+..++.|++|+|+.|.++..-...|..-.++++|+|++|.|+..-.+.|..+.+|-+|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 45666666666655444444555555555555555554333334444445555555555555444445555555555555
Q ss_pred ccCcCCCCCCccccCCcccceeeccccccc------------------------ccCCCCCCCCCCccEEEeeccccCCc
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIG------------------------GTIPSRIGNLSKLVNLGIGFSNLQGQ 176 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (330)
+.|.++...+..|..+++|+.|++..|++. .--...|..+.++++|++..|.+...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 555555444444444555555555554442 11122334445555555555555544
Q ss_pred CcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhcc
Q 037331 177 ILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITN 256 (330)
Q Consensus 177 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 256 (330)
....+-+++.|+.|++++|.+....+..+...++|+.|+++.|+++ .+++..+..+..|++|+|++|.+....-..|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 4445555666666666666666656666666666666666666666 555544445566666666666665444445556
Q ss_pred CCCCcEEEccCCcccCCC---CccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccccc
Q 037331 257 ASNLIGLDFTSNSFSGHI---PNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 257 ~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
+++|++|||++|.+...+ ...|..+++|+.|.+.+|++..++ - +-+.-++.| .|||.+|.|-.|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~--k---rAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP--K---RAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc--h---hhhccCcccceecCCCCcceee
Confidence 666666666666554322 224556666666666666666652 2 123445556 666666665443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-28 Score=215.18 Aligned_cols=286 Identities=22% Similarity=0.183 Sum_probs=198.4
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEE
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQIL 118 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 118 (330)
..++++++++..|.++ .+|..-....+|+.|+|..|.+..+..+.+..++.|+.|||+.|.++.+....+..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 4489999999999887 677755556679999999999988888889999999999999999996666677778899999
Q ss_pred EcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 119 RLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 119 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++++|.++..-...|..+.+|.+|.+++|+++..-+..|+.+++|+.|++..|.+....--.|..+++|+.|.+..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99999999888889999999999999999998555566777999999999888776433334556666666666666654
Q ss_pred CCCcccccCCCCCcEEEecCCcccccCCcchh-----------------------cCCCCccEEEccCcccccccchhhc
Q 037331 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIG-----------------------HSLPNIKYLTLGANNLFGTIPNSIT 255 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----------------------~~~~~L~~L~L~~n~~~~~~~~~~~ 255 (330)
.--..+|..+..+++|++..|++...-..+++ ..+++|++|+|++|+++...+.+|.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 33333444444445555544444422222333 2345555555555555544444555
Q ss_pred cCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccCC
Q 037331 256 NASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICGK 327 (330)
Q Consensus 256 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~~ 327 (330)
.+..|++|+|++|++...-...|..+++|++||+++|.+... +.+.-.-+.-+++| .|++.+|++..|++
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~--IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC--IEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE--EecchhhhccchhhhheeecCceeeecch
Confidence 555555555555555543334556667777777777776544 22222223447777 77888888877654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.8e-25 Score=197.10 Aligned_cols=269 Identities=26% Similarity=0.352 Sum_probs=147.6
Q ss_pred ceEEEEEccCCcccc-ccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 41 QRVTALNLLDMGLRG-TIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
+.++.+.+.+|++.. -+|..+..+..|..|+|+.|.+. ..+..+...+++-+|+|++|.|..+....+.++..|-.|+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 556666666666643 25555666666666666666665 4455555556666666666666633333344555556666
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccC-CcCcccccCCCCCcEEEccCCccC
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQ-GQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
+++|.+. .+|+-+..+..|++|.+++|.+...--..+.++.+|+.|.+++...+ ..+|..+..+.+|..++++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 6666655 45555555666666666665543222223333444444444433221 223333444444444444444444
Q ss_pred CCCcccccCCCCCcEEEecCC-----------------------cccccCCcchhcCCCCccEEEccCccccc-ccchhh
Q 037331 199 GFIPPTIFNISTIRVLNLLGN-----------------------QLSGHLPSTIGHSLPNIKYLTLGANNLFG-TIPNSI 254 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~-----------------------~~~~~~~~~l~~~~~~L~~L~L~~n~~~~-~~~~~~ 254 (330)
..|+.+.++++|+.|++++| +++ .+|..+. .+++|+.|.+.+|+++- -+|..+
T Consensus 236 -~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccch
Confidence 44444444444444444444 444 4444444 44555555555554432 144555
Q ss_pred ccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccc
Q 037331 255 TNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNN 321 (330)
Q Consensus 255 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~ 321 (330)
+.+..|+.+...+|.+. .+|+.++.|.+|+.|.++.|.+.++|..+ .-++.| .+|+.+|+
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaI------HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAI------HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhh------hhcCCcceeeccCCc
Confidence 55556666666666555 66777777777777777777777764444 556777 77887664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.1e-24 Score=192.42 Aligned_cols=276 Identities=21% Similarity=0.293 Sum_probs=229.6
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCc-cCchhhccCCCCcEEEecCcccccccCccccCCCCCcEE
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHG-HLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQIL 118 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 118 (330)
.+++++|++.+|.+.... .-++.++.|+.+.+..|++.. -++..+..+..|++|+|++|++. ..|..+..-.++-.|
T Consensus 54 lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence 378999999999987543 347889999999999998853 46788899999999999999999 888888889999999
Q ss_pred EcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 119 RLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 119 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++++|++.......|-++..|-.|++++|++. .+|+.+..+..|++|.+++|.+...-...+..+++|+.|.+++..-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 99999998555556778999999999999998 88999999999999999999987666667778889999999986544
Q ss_pred -CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCcc
Q 037331 199 -GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNT 277 (330)
Q Consensus 199 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 277 (330)
..+|..+..+.+|..++++.|.+. .+|..+. .+++|+.|+|++|.++ .+....+.-.+|+.|+++.|+++ .+|++
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence 468889999999999999999998 8999988 7999999999999998 44444556678899999999998 78999
Q ss_pred ccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccC
Q 037331 278 FGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 278 ~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
+.++++|+.|-+.+|+++=. ++|+. ...+..| .+...+|.++.++
T Consensus 287 vcKL~kL~kLy~n~NkL~Fe-GiPSG---IGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFE-GIPSG---IGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred HhhhHHHHHHHhccCccccc-CCccc---hhhhhhhHHHHhhccccccCc
Confidence 99999999999988876521 24433 2455566 6666677666554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.3e-24 Score=180.52 Aligned_cols=266 Identities=27% Similarity=0.378 Sum_probs=230.6
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
..++.+.+.+|++.. +..++.++..+..|.+.++.+. ..+.++..+..++.++.++|++. .+|..+..+..+..+++
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 557788999998874 4556889999999999999987 67888899999999999999998 88888889999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
+.|.+. ..++.++.+..++.++..+|++. ..|+.+..+.++..+++.+++.....+ ....++.|++++...|.++ .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHhcccchhhhh-c
Confidence 999987 67888889999999999999988 788889999999999999999874444 4445999999999999887 7
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhh-ccCCCCcEEEccCCcccCCCCcccc
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSI-TNASNLIGLDFTSNSFSGHIPNTFG 279 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~ 279 (330)
+|..++.+.+|+.|++..|.+. .+| .+. +|+.|+++.++.|.+. .+|... .+++++..||++.|++. +.|+.+.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 8899999999999999999997 777 555 7999999999999997 667655 48999999999999999 7999999
Q ss_pred CCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccccc
Q 037331 280 NLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 280 ~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
.+.+|++||+++|.+++.|-. +.++ +| ++-+++|++..+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~s------Lgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYS------LGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred HhhhhhhhcccCCccccCCcc------cccc-eeeehhhcCCchHHH
Confidence 999999999999999987333 3666 78 999999998654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.2e-18 Score=175.89 Aligned_cols=261 Identities=21% Similarity=0.261 Sum_probs=127.5
Q ss_pred EEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEccc
Q 037331 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122 (330)
Q Consensus 43 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 122 (330)
++.|.+.++.+. .+|..| ...+|+.|++.++.+. ..+..+..+++|+.++++++.....+|. ++.+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 455555444432 333333 3455555666555554 2333344555555566555432223332 44555555555555
Q ss_pred CcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCc--------------------ccc-
Q 037331 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQIL--------------------TEI- 181 (330)
Q Consensus 123 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~l- 181 (330)
|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|......+ ..+
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~ 745 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR 745 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccc
Confidence 54444455555555555555555543332333322 33444444444432211111 100
Q ss_pred -----------------------------cCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcC
Q 037331 182 -----------------------------GNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHS 232 (330)
Q Consensus 182 -----------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 232 (330)
...++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~ 823 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--N 823 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--C
Confidence 011344555555554444455555555666666665553332444433 3
Q ss_pred CCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccC-ccCCCCCCCcccccccccc
Q 037331 233 LPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN-NLTTESSSVDRWSFLSSFT 311 (330)
Q Consensus 233 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~l~~~~~~~~~~~~l~~l~ 311 (330)
+++|+.|++++|.....+|.. .++|+.|++++|.+. .+|..+..+++|+.|++++| .++.++..+ ..++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~------~~L~ 893 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI------SKLK 893 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc------cccc
Confidence 555666666555433233321 245666666666665 56666777777777777764 555553322 3445
Q ss_pred eE-EEEeccc
Q 037331 312 LL-YLYFQLN 320 (330)
Q Consensus 312 ~l-~l~l~~n 320 (330)
.| .+++++|
T Consensus 894 ~L~~L~l~~C 903 (1153)
T PLN03210 894 HLETVDFSDC 903 (1153)
T ss_pred CCCeeecCCC
Confidence 55 5555554
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=9.4e-22 Score=166.55 Aligned_cols=276 Identities=21% Similarity=0.174 Sum_probs=194.6
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecC-cccccccCccccCCCCCcEEE
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAY-NKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 119 (330)
+..+.|.|..|+++...+.+|+.+++|+.|+|+.|.|+.+.+++|..++.+..|-+.+ |+|++...+.|.++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 7789999999999987788999999999999999999988899999999988876666 899977777899999999999
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCC------------cCcccccCCCCC
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG------------QILTEIGNLQNL 187 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l~~~~~L 187 (330)
+.-|.+.-...+.|..++++..|.+..|.+...--..+..+.+++.+.+..+.+.. ..+-.++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99888887777889999999999999988873333367777778877776554210 011112222222
Q ss_pred cEEEccCCccCCCCcccccC-CCCCc-EEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEc
Q 037331 188 EYLVLGENNLSGFIPPTIFN-ISTIR-VLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDF 265 (330)
Q Consensus 188 ~~L~l~~~~~~~~~~~~l~~-l~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 265 (330)
.-..+.+.++..+.+..+.. ...+. .+. +.+...+..|..-+..+++|++|+|++|+++..-+.+|.....+++|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~-~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLS-SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhc-cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 22222232222111111110 01111 111 1122222455544557888888888888888777788888888888888
Q ss_pred cCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 266 TSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 266 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
..|++...-...|..+..|+.|++.+|+++.. .+ ..+..+..| .++|-.|++
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~--~~---~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV--AP---GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEE--ec---ccccccceeeeeehccCcc
Confidence 88888755555788888888888888888887 55 334667777 778777777
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=4.6e-18 Score=171.76 Aligned_cols=216 Identities=23% Similarity=0.220 Sum_probs=122.1
Q ss_pred ccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeeccc
Q 037331 67 LVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQF 146 (330)
Q Consensus 67 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 146 (330)
|+.|.+.++.+. ..+..| .+.+|+.|++.++.+. .++..+..+++|+.|+++++......| .+..+++|++|++.+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 455555444433 223322 3456666666666665 445555666777777776654333444 355667777777776
Q ss_pred ccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCC
Q 037331 147 NIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLP 226 (330)
Q Consensus 147 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 226 (330)
|.....+|..+..+++|+.|++.+|.....++..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence 65555666667777777777777665443444333 5666677777666443333321 234556666666554 444
Q ss_pred cch-----------------------------hcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCcc
Q 037331 227 STI-----------------------------GHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNT 277 (330)
Q Consensus 227 ~~l-----------------------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 277 (330)
..+ ...+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 321 011245666666666555556666667777777777776544455554
Q ss_pred ccCCCCccEEEcccC
Q 037331 278 FGNLRHLSVLSLMMN 292 (330)
Q Consensus 278 ~~~l~~L~~l~l~~n 292 (330)
+ .+++|+.|++++|
T Consensus 822 ~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 822 I-NLESLESLDLSGC 835 (1153)
T ss_pred C-CccccCEEECCCC
Confidence 3 4556666666654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=5.3e-22 Score=168.49 Aligned_cols=245 Identities=31% Similarity=0.456 Sum_probs=216.7
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.-++.+++.++.+. ..|++++.+..+..++.+.+++. ..++.+.+++.+..++++.|.+. ..++.++.+..+..++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 55889999999987 66788999999999999999987 67888999999999999999998 77888889999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
.+|++. ..|..+..+.++..+++.+|.+. ..|+..-.+..|++++...|-.. .+|+.++.+.+|+.|++..|.+. +
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 999998 77888889999999999999988 55655556899999999877655 78889999999999999999997 6
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGN 280 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (330)
.| .|.++..|+.+.++.|++. .+|....++++++..|+|.+|++. ..|+.+.-+.+|+.||+++|.+. ..|..+++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 66 7788999999999999998 899998888999999999999998 78888888999999999999999 68888999
Q ss_pred CCCccEEEcccCccCCC
Q 037331 281 LRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 281 l~~L~~l~l~~n~l~~~ 297 (330)
+ .|+.|-+.+|++.++
T Consensus 297 l-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTI 312 (565)
T ss_pred c-eeeehhhcCCchHHH
Confidence 9 999999999998654
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.1e-18 Score=164.36 Aligned_cols=250 Identities=21% Similarity=0.351 Sum_probs=179.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+.+.|++.+++++. +|..+. ++|+.|++++|.+.. ++..+. ++|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 346788888888773 455442 578899999998873 444333 58899999999888 5555443 47889999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+.. ++..+ .++|+.|++++|.++ .
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-c
Confidence 999887 5565543 47889999988887 5666543 578999998887763 33333 246888889888887 4
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGN 280 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (330)
+|..+ .++|+.|++++|.++ .+|..+ +++|+.|++++|++. .+|..+ .+.|+.|++++|.+. .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 55443 357899999999887 677654 368999999999887 456544 368999999999888 5665543
Q ss_pred CCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 281 LRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 281 l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
..|+.|++++|+++.+|.... .....++.+ .+++.+|+|+
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~--~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLP--HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhHH--HHhhcCCCccEEEeeCCCcc
Confidence 368889999999887644331 223445778 8899999885
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.5e-20 Score=163.99 Aligned_cols=276 Identities=22% Similarity=0.240 Sum_probs=178.9
Q ss_pred EEEccCCcccc-ccCCcccCCCcccEEEccCCccCcc----CchhhccCCCCcEEEecCccccc------ccCccccCCC
Q 037331 45 ALNLLDMGLRG-TIPGHLGNLSFLVSLDISENNFHGH----LLKELGQLHRLRVVSFAYNKLSG------SFSSWIGVLS 113 (330)
Q Consensus 45 ~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~ 113 (330)
.|+|.++.+.+ .....|..+++|+.++++++.+... +...+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35666666653 3344456677788888888876432 33345566778888887776541 2234555677
Q ss_pred CCcEEEcccCcCCCCCCccccCCcc---cceeecccccccc----cCCCCCCCC-CCccEEEeeccccCCc----Ccccc
Q 037331 114 KLQILRLQNNSFTGLIPNSLFNLSR---LETLRAQFNIIGG----TIPSRIGNL-SKLVNLGIGFSNLQGQ----ILTEI 181 (330)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~l~~----~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l 181 (330)
+|+.|++++|.+....+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.+++.+|.+... ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888776544554444444 8888888877652 122233445 7888888888877632 23345
Q ss_pred cCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCCcc---hhcCCCCccEEEccCcccccccchhh
Q 037331 182 GNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLPST---IGHSLPNIKYLTLGANNLFGTIPNSI 254 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~~L~~L~L~~n~~~~~~~~~~ 254 (330)
..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.+..... ....+++|++|++++|.+.+.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667899999998888732 2334455678999999998876322221 12257889999999998875322222
Q ss_pred c-----cCCCCcEEEccCCcccC----CCCccccCCCCccEEEcccCccCCCCCCCcccc-ccccc-ceE-EEEeccccc
Q 037331 255 T-----NASNLIGLDFTSNSFSG----HIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWS-FLSSF-TLL-YLYFQLNNC 322 (330)
Q Consensus 255 ~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~-~l~~l-~~l-~l~l~~n~~ 322 (330)
. ..+.|+.|++++|.+.. .+...+..+++|+++++++|.+++. ....+. .+... +.+ ++|+.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE--GAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH--HHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 23789999999998862 2334456678899999999998876 332233 33444 577 888888865
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=7.6e-20 Score=169.74 Aligned_cols=128 Identities=31% Similarity=0.444 Sum_probs=87.7
Q ss_pred CCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEE
Q 037331 185 QNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLD 264 (330)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 264 (330)
+.|+.|.+.+|.+++..-..+.+.+.|+.|++++|++. .+|......++.|++|+|++|.+. .+|..+..++.|+.|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 45666777777776554455666777777777777776 777766667777777777777776 5667777777777777
Q ss_pred ccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccc
Q 037331 265 FTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNN 321 (330)
Q Consensus 265 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~ 321 (330)
..+|++. ..| .+..++.|+.+|++.|+++.. ... ..++. +.| +||+++|.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~--~l~--~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV--TLP--EALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhh--hhh--hhCCC-cccceeeccCCc
Confidence 7777776 566 466777777777777777665 221 11122 567 77777776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=5.1e-17 Score=154.23 Aligned_cols=236 Identities=25% Similarity=0.257 Sum_probs=127.0
Q ss_pred eEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcc
Q 037331 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQ 121 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 121 (330)
+++.|++.+|.++. +|. ..++|+.|++++|.++. ++. ..++|+.|++.+|.+. .+|.. ...|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccC---cccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 34455555554442 222 13445555555554442 221 1234555555555444 22221 1345556666
Q ss_pred cCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCC
Q 037331 122 NNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFI 201 (330)
Q Consensus 122 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 201 (330)
+|.+. .+|. ..++|+.|++++|.+. .+|.. ...|+.|.+.+|.+.. ++. + ..+|+.|++++|.++ .+
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls-~L 357 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLA-SL 357 (788)
T ss_pred CCccc-cccc---cccccceeECCCCccc-cCCCC---cccccccccccCcccc-ccc-c--ccccceEecCCCccC-CC
Confidence 66555 2232 1345666666666665 23332 1245555565555542 221 1 135777777777776 34
Q ss_pred cccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCC
Q 037331 202 PPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNL 281 (330)
Q Consensus 202 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 281 (330)
|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.+. .+|.. .
T Consensus 358 P~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~ 421 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---P 421 (788)
T ss_pred CCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---h
Confidence 432 245666777777766 45532 3467777777777763 4432 256777777777776 35543 2
Q ss_pred CCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccc
Q 037331 282 RHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 282 ~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~ 324 (330)
.+|+.|++++|+++.+|. .+..++.+ .++|++|+|+.
T Consensus 422 ~~L~~L~Ls~NqLt~LP~------sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 422 SGLLSLSVYRNQLTRLPE------SLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhhccCcccccCh------HHhhccCCCeEECCCCCCCc
Confidence 356777777777775522 23456777 88888888864
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=2e-19 Score=167.07 Aligned_cols=270 Identities=25% Similarity=0.335 Sum_probs=195.7
Q ss_pred CCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcE
Q 037331 38 SRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQI 117 (330)
Q Consensus 38 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 117 (330)
+....++.++++++.+. .+|..+..+.+|+.+....|.++ ..+..+....+|+.+.+..|++. .+|....++..|+.
T Consensus 238 p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 34466777777777776 34566777888888888887775 55666667777777788888777 56666677888888
Q ss_pred EEcccCcCCCCCCccccCCcc-cceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCc
Q 037331 118 LRLQNNSFTGLIPNSLFNLSR-LETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENN 196 (330)
Q Consensus 118 L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 196 (330)
|++..|.+....+..+..... +..++.+.+.+.......=..++.|+.|.+.+|.+.+...+.+.++++|+.|+|++|.
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 888888877433333333333 5666666666552211122345678889999999988888888999999999999999
Q ss_pred cCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC-CC
Q 037331 197 LSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH-IP 275 (330)
Q Consensus 197 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~ 275 (330)
+.......+.++..|+.|+++||.++ .+|..+. .++.|++|..-.|++. .+| .+..++.|+.+|++.|.+... ++
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 98554456778999999999999998 8998877 7999999999999987 677 678899999999999988753 33
Q ss_pred ccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccc
Q 037331 276 NTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLN 320 (330)
Q Consensus 276 ~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n 320 (330)
... .-++|++||+++|.-... . -+.++.+.++ .+++.-+
T Consensus 471 ~~~-p~p~LkyLdlSGN~~l~~--d---~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 471 EAL-PSPNLKYLDLSGNTRLVF--D---HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhC-CCcccceeeccCCccccc--c---hhhhHHhhhhhheecccC
Confidence 332 227999999999963222 1 2445666666 5555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.6e-17 Score=155.24 Aligned_cols=227 Identities=23% Similarity=0.389 Sum_probs=176.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.++ .+|..+. .+|++|++++|.+. .++..+. .+|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 67999999999988 4555443 58999999999887 4454443 47999999999998 6666553 58999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+. .+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|.+.. ++..+ .++|+.|++++|.++ .
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~ 339 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-S 339 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-c
Confidence 999988 4566543 58999999999887 4555432 478899999988763 33333 368999999999988 4
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccc--
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF-- 278 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-- 278 (330)
+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|+|++|++. .+|..+. ..|+.|++++|++. .+|..+
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence 665553 68999999999998 787654 368999999999998 4555543 47999999999998 566543
Q ss_pred --cCCCCccEEEcccCccCC
Q 037331 279 --GNLRHLSVLSLMMNNLTT 296 (330)
Q Consensus 279 --~~l~~L~~l~l~~n~l~~ 296 (330)
..++.+..+++.+|++..
T Consensus 410 ~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HhhcCCCccEEEeeCCCccH
Confidence 445889999999999864
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=9.1e-19 Score=154.02 Aligned_cols=254 Identities=22% Similarity=0.269 Sum_probs=184.2
Q ss_pred ceEEEEEccCCcccc----ccCCcccCCCcccEEEccCCccCc------cCchhhccCCCCcEEEecCcccccccCcccc
Q 037331 41 QRVTALNLLDMGLRG----TIPGHLGNLSFLVSLDISENNFHG------HLLKELGQLHRLRVVSFAYNKLSGSFSSWIG 110 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 110 (330)
.+++.|++.++.+++ .++..+...+++++++++++.+.. ..+..+..+++|+.|+++++.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 559999999998854 244556678889999999887652 2234567788999999999988755555554
Q ss_pred CCCC---CcEEEcccCcCCC----CCCccccCC-cccceeeccccccccc----CCCCCCCCCCccEEEeeccccCCc--
Q 037331 111 VLSK---LQILRLQNNSFTG----LIPNSLFNL-SRLETLRAQFNIIGGT----IPSRIGNLSKLVNLGIGFSNLQGQ-- 176 (330)
Q Consensus 111 ~l~~---L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~-- 176 (330)
.+.. |++|++++|.+.+ .....+..+ ++|+.|++++|.+.+. +...+..+++|+.|++.+|.+...
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 9999999998763 222344566 8999999999988732 333456677899999999887742
Q ss_pred --CcccccCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCCcchhc----CCCCccEEEccCccc
Q 037331 177 --ILTEIGNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLPSTIGH----SLPNIKYLTLGANNL 246 (330)
Q Consensus 177 --~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~L~~n~~ 246 (330)
+...+...++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+.. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 223345667999999999988643 3345567889999999999887422222221 247999999999988
Q ss_pred cc----ccchhhccCCCCcEEEccCCcccCC----CCccccCC-CCccEEEcccCcc
Q 037331 247 FG----TIPNSITNASNLIGLDFTSNSFSGH----IPNTFGNL-RHLSVLSLMMNNL 294 (330)
Q Consensus 247 ~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~l~l~~n~l 294 (330)
+. .+...+..++.|+.+++++|.+... ....+... +.|+++++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 63 2344556678999999999999854 33334444 6899999988864
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=6e-16 Score=147.04 Aligned_cols=224 Identities=24% Similarity=0.275 Sum_probs=172.9
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++|+.|++++|.++. +|.. .++|+.|++.+|.+.. ++.. ..+|+.|++++|.++ .+|.. .++|+.|++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeEC
Confidence 789999999999884 4542 4689999999998763 3332 257889999999988 45542 478999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+ +|.. ...|+.|.+++|.+. .+|.. ..+|+.|++++|.+.. ++.. ..+|+.|++++|.++ .
T Consensus 310 S~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~ 376 (788)
T PRK15387 310 SDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S 376 (788)
T ss_pred CCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-c
Confidence 9999884 3432 235788899999887 45542 2579999999998873 3332 357888999999988 4
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGN 280 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (330)
+|.. ...|+.|++++|.++ .+|.. .++|+.|++++|.+.+ +|.. +.+|+.|++++|++. .+|..+..
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred Cccc---ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhh
Confidence 5543 357999999999998 67653 4689999999999984 5543 357889999999998 68988999
Q ss_pred CCCccEEEcccCccCCCCCCCccc
Q 037331 281 LRHLSVLSLMMNNLTTESSSVDRW 304 (330)
Q Consensus 281 l~~L~~l~l~~n~l~~~~~~~~~~ 304 (330)
+++|+.|++++|+|++. .+..+
T Consensus 444 L~~L~~LdLs~N~Ls~~--~~~~L 465 (788)
T PRK15387 444 LSSETTVNLEGNPLSER--TLQAL 465 (788)
T ss_pred ccCCCeEECCCCCCCch--HHHHH
Confidence 99999999999999876 55434
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.5e-18 Score=129.54 Aligned_cols=165 Identities=27% Similarity=0.501 Sum_probs=108.9
Q ss_pred hccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCcc
Q 037331 85 LGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLV 164 (330)
Q Consensus 85 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 164 (330)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. .+|..+..+++|++|+++.|++. ..|..|+++|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 344556666677777776 55566666777777777777766 55666677777777777776665 6677777777777
Q ss_pred EEEeeccccC-CcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccC
Q 037331 165 NLGIGFSNLQ-GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGA 243 (330)
Q Consensus 165 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 243 (330)
.+++.+|.+. ...+..|-.++.|+.|.+++|.+. .+|..++++.+|+.|.+.+|.+. ++|..++ .+.+|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccc
Confidence 7777766654 234445555666666777777665 56666677777777777777666 6777666 566777777777
Q ss_pred cccccccchhhcc
Q 037331 244 NNLFGTIPNSITN 256 (330)
Q Consensus 244 n~~~~~~~~~~~~ 256 (330)
|+++ .+|..++.
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 7666 44444443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=2.6e-18 Score=145.87 Aligned_cols=255 Identities=19% Similarity=0.152 Sum_probs=188.2
Q ss_pred CcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEccc-CcCCCCCCccccCCcccceee
Q 037331 65 SFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN-NSFTGLIPNSLFNLSRLETLR 143 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 143 (330)
+....+.|..|.|+..-+.+|..+++|+.|+|++|.|+.+.|.+|.+++.+..|-+.+ |+++......|.++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3577889999999977788999999999999999999999999999999888777766 888877777899999999999
Q ss_pred cccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCC------------CCcccccCCCCC
Q 037331 144 AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG------------FIPPTIFNISTI 211 (330)
Q Consensus 144 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~l~~l~~L 211 (330)
+.-+++.-.....+..++++..|.+..|.+.......+..+..++.+.+..|.... ..|..++..+-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 98888876666778888999999888887765555567778888888887776321 122222333333
Q ss_pred cEEEecCCcccccCCcchhcCCCCccEE---EccCcccccccc-hhhccCCCCcEEEccCCcccCCCCccccCCCCccEE
Q 037331 212 RVLNLLGNQLSGHLPSTIGHSLPNIKYL---TLGANNLFGTIP-NSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVL 287 (330)
Q Consensus 212 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L---~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 287 (330)
....+.+.++. .+...-+ .+. ++.+ -.+.+...+..| ..|..+++|+.|++++|++++.-+.+|.....+++|
T Consensus 227 ~p~rl~~~Ri~-q~~a~kf-~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 227 SPYRLYYKRIN-QEDARKF-LCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred chHHHHHHHhc-ccchhhh-hhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 33333444443 3332222 111 2222 222232333333 458899999999999999998888899999999999
Q ss_pred EcccCccCCCCCCCcccccccccceE-EEEeccccccccCC
Q 037331 288 SLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICGK 327 (330)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~~ 327 (330)
.+..|++... .- ..+..+..| .++|.+|+|+.+..
T Consensus 304 ~L~~N~l~~v--~~---~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 304 YLTRNKLEFV--SS---GMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hcCcchHHHH--HH---HhhhccccceeeeecCCeeEEEec
Confidence 9999999877 33 235677888 89999999987653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=125.63 Aligned_cols=164 Identities=32% Similarity=0.535 Sum_probs=136.8
Q ss_pred CCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEE
Q 037331 111 VLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYL 190 (330)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 190 (330)
.+.++..|.+++|+++ .+|+.+..+.+|+.|++.+|.+. .+|..++.+++|+.++++-|++. ..+..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4567778889999998 77888899999999999999988 78889999999999999877765 778889999999999
Q ss_pred EccCCccCC-CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCc
Q 037331 191 VLGENNLSG-FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNS 269 (330)
Q Consensus 191 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 269 (330)
++.+|++.. .+|..++.+..|+.|.+++|.+. .+|+.++ .+.+|+-|.+.+|.+. .+|..++.+..|++|.+.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999888763 57788888888888888888887 8888887 6888888888888877 677788888888888888888
Q ss_pred ccCCCCccccCC
Q 037331 270 FSGHIPNTFGNL 281 (330)
Q Consensus 270 l~~~~~~~~~~l 281 (330)
+. .+|..++.+
T Consensus 185 l~-vlppel~~l 195 (264)
T KOG0617|consen 185 LT-VLPPELANL 195 (264)
T ss_pred ee-ecChhhhhh
Confidence 87 666655543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=6.6e-12 Score=119.32 Aligned_cols=143 Identities=29% Similarity=0.456 Sum_probs=116.0
Q ss_pred hHHHHHHhhcCCccchhcCCCcCCCCce-----eeeeeeeCCCC----ceEEEEEccCCccccccCCcccCCCcccEEEc
Q 037331 2 SALLAFKAHVLDYRSALANNWSIFYPIC-----SCVGISCGSRH----QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDI 72 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 72 (330)
.|++++|+...++.+ .+|+. ++| .|.|+.|.... ..++.|+|.++.+.+.+|..+..+++|+.|++
T Consensus 375 ~aL~~~k~~~~~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~L 449 (623)
T PLN03150 375 SALQTLKSSLGLPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINL 449 (623)
T ss_pred HHHHHHHHhcCCccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEEC
Confidence 478889988866543 25964 344 69999996321 35889999999999999999999999999999
Q ss_pred cCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCC-cccceeecccccc
Q 037331 73 SENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNL-SRLETLRAQFNII 149 (330)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l 149 (330)
++|.+.+.++..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+... .++..+++.+|..
T Consensus 450 s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999988888889999999999999999998889989999999999999999888888877653 3455666666643
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.4e-13 Score=116.51 Aligned_cols=208 Identities=23% Similarity=0.278 Sum_probs=116.7
Q ss_pred ccCCCCcEEEecCcccccccC--ccccCCCCCcEEEcccCcCCC--CCCccccCCcccceeecccccccccCCC-CCCCC
Q 037331 86 GQLHRLRVVSFAYNKLSGSFS--SWIGVLSKLQILRLQNNSFTG--LIPNSLFNLSRLETLRAQFNIIGGTIPS-RIGNL 160 (330)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~ 160 (330)
.++.+|+.+.|.++.+. ..+ .....+++++.|+++.|-+.. .+......+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677888888887765 222 355678888888888876552 2223445677888888888776521111 11245
Q ss_pred CCccEEEeeccccCCcC-cccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCC--cchhcCCCCcc
Q 037331 161 SKLVNLGIGFSNLQGQI-LTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLP--STIGHSLPNIK 237 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~ 237 (330)
+.|+.|.+++|+++... ...+..+|+|+.|++..|...........-+..|+.|++++|.+. .++ ...+ .++.|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~-~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG-TLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc-cccchh
Confidence 56677777777765322 222345677777777776322111111222456677777776665 333 2223 566677
Q ss_pred EEEccCcccccc-cchh-----hccCCCCcEEEccCCcccCCCC--ccccCCCCccEEEcccCccCCC
Q 037331 238 YLTLGANNLFGT-IPNS-----ITNASNLIGLDFTSNSFSGHIP--NTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 238 ~L~L~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.|+++.+.+.+. .|+. ...+++|+.|+++.|.+. +.+ ..+..+++|+.+.+..|.++..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 777776666542 2221 123566666666666664 222 1234455666666666666544
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.5e-12 Score=107.58 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=102.4
Q ss_pred cccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 180 EIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
.+..++.|+++++++|.++ .+.+.+.-.|.++.|+++.|++. .+.. +. .+++|+.|+|++|.+. .+..+-..+-+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcC
Confidence 3455778888888888887 55666666788888999988886 4433 44 5888899999988887 45555566778
Q ss_pred CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccC
Q 037331 260 LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
.+.|.+++|.+. ....++++.+|..||+++|++..+ +..+...++++| .+.|.+|++..+.
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~l----deV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEEL----DEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhH----HHhcccccccHHHHHhhcCCCccccc
Confidence 888888888875 234577888888889988888777 335667888888 8888888886543
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=6.6e-13 Score=111.71 Aligned_cols=235 Identities=22% Similarity=0.216 Sum_probs=148.6
Q ss_pred cCCCcccEEEccCCccCcc----CchhhccCCCCcEEEecCcc---cccccC-------ccccCCCCCcEEEcccCcCCC
Q 037331 62 GNLSFLVSLDISENNFHGH----LLKELGQLHRLRVVSFAYNK---LSGSFS-------SWIGVLSKLQILRLQNNSFTG 127 (330)
Q Consensus 62 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~~~ 127 (330)
-.+..++.++|++|.+... +...+.+.+.|+..++++-- ....+| .++..+++|+++++++|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3455566666666655432 22334455566666666421 111222 334455677777777776653
Q ss_pred CCCc----cccCCcccceeeccccccccc-------------CCCCCCCCCCccEEEeeccccCCcC----cccccCCCC
Q 037331 128 LIPN----SLFNLSRLETLRAQFNIIGGT-------------IPSRIGNLSKLVNLGIGFSNLQGQI----LTEIGNLQN 186 (330)
Q Consensus 128 ~~~~----~l~~l~~L~~L~l~~~~l~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~ 186 (330)
..+. .+.++..|++|.+.+|.+... ......+-++|+.+.+.+|.+.+.. ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 3333 234667777777777766411 1123345678888888888776432 334556788
Q ss_pred CcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCC----cchhcCCCCccEEEccCcccccccchhh----
Q 037331 187 LEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLP----STIGHSLPNIKYLTLGANNLFGTIPNSI---- 254 (330)
Q Consensus 187 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~---- 254 (330)
|+.+.++.|.+... ...++..+++|++|++.+|.++.... ..+. .++.|+.|++++|.+......++
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHHHHHH
Confidence 99999999888632 22456788999999999998763222 2222 56789999999998875543333
Q ss_pred -ccCCCCcEEEccCCcccCC----CCccccCCCCccEEEcccCccCCC
Q 037331 255 -TNASNLIGLDFTSNSFSGH----IPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 255 -~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
...|.|+.+.+.+|.+... +..++...+.|..|++++|.+.+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~ 313 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEK 313 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccccc
Confidence 3468899999999988752 222345678899999999998543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=5.6e-13 Score=118.71 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=158.6
Q ss_pred CCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEE
Q 037331 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLG 167 (330)
Q Consensus 88 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 167 (330)
+..-..++++.|.+. .+|..+..+..|+.+.+..|.+. ..|..+..+..|.+++++.|++. .+|..++.++ |+.+-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344556788888887 77777777888888888888876 67888888888899999988887 7777777775 78888
Q ss_pred eeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccc
Q 037331 168 IGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLF 247 (330)
Q Consensus 168 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ 247 (330)
++.|++. .++..++..+.|..|+.+.|.+. .+|..+.++..|+.|.+..|++. .+|..+. .+ .|..|+++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCcee
Confidence 8877766 66777777888889999999887 67788888889999999999998 8888887 34 4899999999998
Q ss_pred cccchhhccCCCCcEEEccCCcccCCCCccc---cCCCCccEEEcccCc
Q 037331 248 GTIPNSITNASNLIGLDFTSNSFSGHIPNTF---GNLRHLSVLSLMMNN 293 (330)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~l~l~~n~ 293 (330)
.+|..|..+..|++|-|.+|.++ ..|..+ +..+-+|+|+..-|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78888999999999999999998 455543 567778889888775
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-12 Score=113.45 Aligned_cols=212 Identities=21% Similarity=0.205 Sum_probs=137.8
Q ss_pred cCCCCCcEEEcccCcCCCCCC-ccccCCcccceeecccccccc--cCCCCCCCCCCccEEEeeccccCCcCccc-ccCCC
Q 037331 110 GVLSKLQILRLQNNSFTGLIP-NSLFNLSRLETLRAQFNIIGG--TIPSRIGNLSKLVNLGIGFSNLQGQILTE-IGNLQ 185 (330)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~ 185 (330)
+++.+|+++.+.++.+....- .....+++++.|++++|.+.. .+.....++|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788888888877652211 355678888888888876652 22334556788888888887765332221 22467
Q ss_pred CCcEEEccCCccCCC-CcccccCCCCCcEEEecCCc-ccccCCcchhcCCCCccEEEccCccccccc-chhhccCCCCcE
Q 037331 186 NLEYLVLGENNLSGF-IPPTIFNISTIRVLNLLGNQ-LSGHLPSTIGHSLPNIKYLTLGANNLFGTI-PNSITNASNLIG 262 (330)
Q Consensus 186 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~ 262 (330)
+|++|.++.|+++-. +...+..+|+|+.|.+.+|. +. ..... ...+..|++|+|++|++...- ....+.++.|+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecch-hhhhhHHhhccccCCcccccccccccccccchhh
Confidence 788888888887621 23344567888888888873 22 11111 113567888888888776321 134567888888
Q ss_pred EEccCCcccC-CCCcc-----ccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccCC
Q 037331 263 LDFTSNSFSG-HIPNT-----FGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICGK 327 (330)
Q Consensus 263 L~l~~n~l~~-~~~~~-----~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~~ 327 (330)
|+++.|.+.+ ..|+. ...+++|++|++..|++.+. ..+..+..+++| .+....|+++....
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w----~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW----RSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccc----cccchhhccchhhhhhccccccccccc
Confidence 8888887764 23332 34678888888888888776 446677777777 77777888765543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=5.9e-12 Score=106.03 Aligned_cols=231 Identities=16% Similarity=0.197 Sum_probs=168.0
Q ss_pred ceEEEEEccCCcccc----ccCCcccCCCcccEEEccCCcc---CccCc-------hhhccCCCCcEEEecCcccccccC
Q 037331 41 QRVTALNLLDMGLRG----TIPGHLGNLSFLVSLDISENNF---HGHLL-------KELGQLHRLRVVSFAYNKLSGSFS 106 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~ 106 (330)
..++.|+|++|.+.. .+.+.+.+.++|+..++++-.. ...++ .++-.+|+|++++|++|-+-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 668999999998854 3445577788999999987422 22233 334567899999999997763322
Q ss_pred ----ccccCCCCCcEEEcccCcCCCC-------------CCccccCCcccceeeccccccccc----CCCCCCCCCCccE
Q 037331 107 ----SWIGVLSKLQILRLQNNSFTGL-------------IPNSLFNLSRLETLRAQFNIIGGT----IPSRIGNLSKLVN 165 (330)
Q Consensus 107 ----~~l~~l~~L~~L~l~~~~~~~~-------------~~~~l~~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~ 165 (330)
..++.+..|+.|.+.+|++... .......-+.|+.+...+|++... +...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 3456789999999999987621 122334567899999999988632 2234566789999
Q ss_pred EEeeccccCCc----CcccccCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCC----cchhcCC
Q 037331 166 LGIGFSNLQGQ----ILTEIGNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLP----STIGHSL 233 (330)
Q Consensus 166 L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~ 233 (330)
+.+..|++... ....+..+++|+.|+|.+|-++.. +..++..+++|+.|++++|.+...-. ..+-...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 99999887633 334567899999999999988633 34556678899999999998864332 2333357
Q ss_pred CCccEEEccCcccccc----cchhhccCCCCcEEEccCCccc
Q 037331 234 PNIKYLTLGANNLFGT----IPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 234 ~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
|.|+.+.+.+|.++.. +...+...+.|..|+|++|++.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8999999999988743 3334456789999999999983
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6.8e-11 Score=93.10 Aligned_cols=106 Identities=22% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCccEEEeeccccCCcCccccc-CCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEE
Q 037331 161 SKLVNLGIGFSNLQGQILTEIG-NLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYL 239 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 239 (330)
.++++|++.++.+... ..++ .+.+|+.|++++|.++. + ..+..++.|+.|++++|.++ .+...+...+|+|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3445555555554422 1232 34455555555555542 1 12334455555555555554 3333222234555555
Q ss_pred EccCcccccc-cchhhccCCCCcEEEccCCccc
Q 037331 240 TLGANNLFGT-IPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 240 ~L~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
++++|++.+. -...+..+++|+.|++.+|.+.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555554421 1122344455555555555444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=105.88 Aligned_cols=195 Identities=35% Similarity=0.461 Sum_probs=109.6
Q ss_pred EEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCc-ccceeecccccccccCCCCCCCCCCccEEEeecc
Q 037331 93 VVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLS-RLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFS 171 (330)
Q Consensus 93 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 171 (330)
.+.+..+.+. .....+..+..++.|++.++.++ ..+....... +|+.|+++++.+. .++..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555443 22222334456677777777666 4444444453 6777777776665 44445566666666766666
Q ss_pred ccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccc
Q 037331 172 NLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251 (330)
Q Consensus 172 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 251 (330)
.+.. .+......+.|+.|++++|.+. .+|.....+..|+++.+++|... ..+..+. .+..+..+.+.+|++. ..+
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-ecc
Confidence 6552 2222225566666666666665 44443334445666666666433 3444444 4556666666666554 224
Q ss_pred hhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 252 NSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 252 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
..++.+++++.|++++|.+. .++. ++.+.+++.+++++|.+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 44555666666666666666 3333 56666666666666666555
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.3e-10 Score=105.30 Aligned_cols=181 Identities=31% Similarity=0.493 Sum_probs=106.0
Q ss_pred ccCCCCcEEEecCcccccccCccccCCC-CCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCcc
Q 037331 86 GQLHRLRVVSFAYNKLSGSFSSWIGVLS-KLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLV 164 (330)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 164 (330)
..++.++.+++.++.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|+++.|.+. .++......+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 34456666777776666 4444444443 6777777777665 33445566677777777777666 4444444566677
Q ss_pred EEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCc
Q 037331 165 NLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGAN 244 (330)
Q Consensus 165 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n 244 (330)
.++++++.+. .++........|+++.+++|.+. ..+..+.++..+..+.+.+|++. .++..+. .++.++.|++++|
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~-~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG-NLSNLETLDLSNN 265 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc-cccccceeccccc
Confidence 7777766655 23332233444666777666433 34445556666666666666665 3344433 5566777777777
Q ss_pred ccccccchhhccCCCCcEEEccCCcccCCCC
Q 037331 245 NLFGTIPNSITNASNLIGLDFTSNSFSGHIP 275 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 275 (330)
.+. .++. ++...+++.|+++++.+....+
T Consensus 266 ~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 266 QIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccc-cccc-ccccCccCEEeccCccccccch
Confidence 666 3333 5566677777777776664333
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.2e-10 Score=91.76 Aligned_cols=112 Identities=29% Similarity=0.334 Sum_probs=41.4
Q ss_pred ccCCCCCcEEEccCCccCCCCccccc-CCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 181 IGNLQNLEYLVLGENNLSGFIPPTIF-NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
+.+...+++|++.+|.++. + +.+. .+.+|+.|++++|++. .+.. +. .+++|++|++++|++.+........+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-LP-GLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-cc-ChhhhhhcccCCCCCCccccchHHhCCc
Confidence 4456678899999998873 3 3444 4678999999999997 5543 33 5789999999999998433322246889
Q ss_pred CcEEEccCCcccCC-CCccccCCCCccEEEcccCccCCC
Q 037331 260 LIGLDFTSNSFSGH-IPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 260 L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
|+.|++++|++.+. .-..+..+++|++|++.+|++...
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999988741 123567889999999999998876
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=6.9e-12 Score=111.88 Aligned_cols=180 Identities=31% Similarity=0.484 Sum_probs=151.3
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEE
Q 037331 112 LSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLV 191 (330)
Q Consensus 112 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 191 (330)
+.--...+++.|.+. .+|..+..+..|+.+.+..|.+. .+|..++++..|..++++.|.++ ..+..+-.+ -|+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 334446778888877 77888888889999999998887 78888999999999999998876 444444434 488899
Q ss_pred ccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 192 LGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 192 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
+++|+++ .+|..++..+.|..|+.+.|.+. .+|..++ .+.+|+.|++..|++. .+|..+..+ .|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9999998 77888888889999999999998 8999888 7899999999999998 667777644 5788999999999
Q ss_pred CCCCccccCCCCccEEEcccCccCCCCCCC
Q 037331 272 GHIPNTFGNLRHLSVLSLMMNNLTTESSSV 301 (330)
Q Consensus 272 ~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 301 (330)
.+|-.|.++..|++|-|.+|++..-|+.+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 79999999999999999999999875544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.6e-11 Score=98.99 Aligned_cols=131 Identities=26% Similarity=0.341 Sum_probs=93.2
Q ss_pred CCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEE
Q 037331 160 LSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYL 239 (330)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 239 (330)
+..|+++++++|.+. .+...+.-.|.++.|+++.|.+.. + ..+..+++|+.|++++|.++ .+..+-. .+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHh-hhcCEeee
Confidence 345777788877766 334455556788888888888762 2 23667788888888888776 5555544 56788888
Q ss_pred EccCcccccccchhhccCCCCcEEEccCCcccCC-CCccccCCCCccEEEcccCccCCC
Q 037331 240 TLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH-IPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 240 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.|++|.+.+ + ..+..+-+|..||+++|++... --..++++|.|+.+.+.+|++...
T Consensus 358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888887752 2 2356677888888888888641 123578888888888888888776
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=6.6e-10 Score=108.37 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=82.1
Q ss_pred eEEEEEccCCccccccCCcccCCCcccEEEccCCc--cCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENN--FHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
.+++.++-++.+.. ++. -..+++|++|-+.++. +.....+.|..+|.|++||+++|.--+.+|..++.+.+|++|+
T Consensus 524 ~~rr~s~~~~~~~~-~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhh-ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 45566665555432 122 2345567777777664 4434445567777777777777655557777777777777777
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeecc
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFS 171 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 171 (330)
++++.+. .+|..+.++..|.+|++..+......+.....+.+|+.|.+...
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7777776 66777777777777777766554444555555777777776554
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=103.85 Aligned_cols=107 Identities=30% Similarity=0.437 Sum_probs=80.3
Q ss_pred CcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcc
Q 037331 211 IRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLM 290 (330)
Q Consensus 211 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 290 (330)
++.|++++|.+.+.+|..+. .+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 66778888888777777766 67888888888888877777777888888888888888887788878888888888888
Q ss_pred cCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 291 MNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 291 ~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
+|.+++. .|..+.. ....+ .+++.+|..
T Consensus 499 ~N~l~g~--iP~~l~~--~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGR--VPAALGG--RLLHRASFNFTDNAG 527 (623)
T ss_pred CCccccc--CChHHhh--ccccCceEEecCCcc
Confidence 8888766 6644332 12345 777777765
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=7e-10 Score=108.18 Aligned_cols=129 Identities=27% Similarity=0.340 Sum_probs=99.1
Q ss_pred CCceEEEEEccCCc--cccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCc
Q 037331 39 RHQRVTALNLLDMG--LRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQ 116 (330)
Q Consensus 39 ~~~~l~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 116 (330)
..++++.|-+.++. +.......|..++.|+.|++++|.-....|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34679999999986 44444556888999999999988655688999999999999999999999 8999999999999
Q ss_pred EEEcccCcCCCCCCccccCCcccceeeccccccc--ccCCCCCCCCCCccEEEe
Q 037331 117 ILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIG--GTIPSRIGNLSKLVNLGI 168 (330)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l 168 (330)
+|++..+......+.....+.+|++|.+...... ......+..+..|+.+.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999988766556777777999999998765421 112223344444544444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.8e-09 Score=70.06 Aligned_cols=61 Identities=39% Similarity=0.588 Sum_probs=37.5
Q ss_pred CCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCcc
Q 037331 234 PNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNL 294 (330)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l 294 (330)
|+|++|++++|++....+..|..+++|+.|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666644445566666666666666666654455666666666666666653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=7.2e-09 Score=67.16 Aligned_cols=61 Identities=33% Similarity=0.531 Sum_probs=47.2
Q ss_pred CCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcc
Q 037331 209 STIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSF 270 (330)
Q Consensus 209 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 270 (330)
|+|++|++++|.+. .++...+..+++|++|++++|.+....+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888887 77766665788888888888888766667778888888888888764
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.2e-10 Score=93.88 Aligned_cols=56 Identities=29% Similarity=0.275 Sum_probs=24.0
Q ss_pred cceeecccccccc-cCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccC
Q 037331 139 LETLRAQFNIIGG-TIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGE 194 (330)
Q Consensus 139 L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 194 (330)
++++++++..++. .+...+++|.+|+.+.+.+..+.+.+...+++-..|++++++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 4444444443331 1112233444444444444444444444444444444444444
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.8e-10 Score=94.19 Aligned_cols=179 Identities=21% Similarity=0.177 Sum_probs=127.0
Q ss_pred CCCcEEEcccCcCCC-CCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccc-cCCc-CcccccCCCCCcE
Q 037331 113 SKLQILRLQNNSFTG-LIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSN-LQGQ-ILTEIGNLQNLEY 189 (330)
Q Consensus 113 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~ 189 (330)
..||++|++...++. ..-..+..|.+|+.|.+.++.+.+.+...+..-.+|+.++++.+. ++.. ..-.+..|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358889998877762 333456678899999999998887777777777899999998754 3322 2223568899999
Q ss_pred EEccCCccCCCC-cccccC-CCCCcEEEecCCccc--ccCCcchhcCCCCccEEEccCccccc-ccchhhccCCCCcEEE
Q 037331 190 LVLGENNLSGFI-PPTIFN-ISTIRVLNLLGNQLS--GHLPSTIGHSLPNIKYLTLGANNLFG-TIPNSITNASNLIGLD 264 (330)
Q Consensus 190 L~l~~~~~~~~~-~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ 264 (330)
|++++|.++... ...+.. -+.|+.|+++|+.-. ..-...+...+|+|.+|+|++|.... .....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999876332 122222 357889999987421 11223344579999999999985432 3334567889999999
Q ss_pred ccCCcccCCCCc---cccCCCCccEEEcccCc
Q 037331 265 FTSNSFSGHIPN---TFGNLRHLSVLSLMMNN 293 (330)
Q Consensus 265 l~~n~l~~~~~~---~~~~l~~L~~l~l~~n~ 293 (330)
++.|... +|. .+...|+|.+|++.++.
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 9999753 443 46788999999998875
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.7e-09 Score=86.19 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=94.2
Q ss_pred cCCCCcEEEecCcccc--cccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccc-cCCCCCCCCCCc
Q 037331 87 QLHRLRVVSFAYNKLS--GSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGG-TIPSRIGNLSKL 163 (330)
Q Consensus 87 ~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L 163 (330)
.+.+++.++|..|.++ ..+...+.++|.|++|+++.|++.......-....+|+.|.+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3445566666666555 1233334456666666666665542211111233455566555554431 222334455555
Q ss_pred cEEEeeccccCCcC--ccccc-CCCCCcEEEccCCccCC--CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccE
Q 037331 164 VNLGIGFSNLQGQI--LTEIG-NLQNLEYLVLGENNLSG--FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238 (330)
Q Consensus 164 ~~L~l~~~~~~~~~--~~~l~-~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 238 (330)
+++.++.|...... ..... .-+.+.++++..|...- ....-..-.|++..+.+..|++...-...-+...|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 55555554322110 00011 11234444444433210 000000113566666666666542222222224566666
Q ss_pred EEccCcccccc-cchhhccCCCCcEEEccCCcccCCCCc------cccCCCCccEEEc
Q 037331 239 LTLGANNLFGT-IPNSITNASNLIGLDFTSNSFSGHIPN------TFGNLRHLSVLSL 289 (330)
Q Consensus 239 L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~l~l 289 (330)
|+|+.+++.+. -.+++..++.|..|+++++.+.+.+.. .++.+++++.|+=
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 77777766542 233456667777777777766543221 2456666666653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.7e-09 Score=96.25 Aligned_cols=218 Identities=28% Similarity=0.368 Sum_probs=114.3
Q ss_pred CCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCccccee
Q 037331 63 NLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETL 142 (330)
Q Consensus 63 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 142 (330)
.+..++.+.+..+.+.. +...+..+.+|+.+++.+|.+. .+...+..+++|+.|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 44555555666655553 2333556667777777777766 3333355667777777777776633 334455557777
Q ss_pred ecccccccccCCCCCCCCCCccEEEeeccccCCcCc-ccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcc
Q 037331 143 RAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQIL-TEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQL 221 (330)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 221 (330)
++.+|.+... ..+..++.|+.++++++.+..... . ...+..++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 7777766521 234446666667777666553332 1 34556666666666665421 1122222333345555555
Q ss_pred cccCCcchhcCCCC--ccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccC
Q 037331 222 SGHLPSTIGHSLPN--IKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295 (330)
Q Consensus 222 ~~~~~~~l~~~~~~--L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~ 295 (330)
. .+-... .+.. |+.+.+++|.+. ..+..+..+..+..+++.++++.. . ..+...+.+..+....|++.
T Consensus 221 ~-~~~~l~--~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 S-KLEGLN--ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-L-EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred e-eccCcc--cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc-c-ccccccchHHHhccCcchhc
Confidence 4 222111 1222 566666666665 222334455566666666665542 1 12334445555555555544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=7.6e-09 Score=94.21 Aligned_cols=217 Identities=22% Similarity=0.293 Sum_probs=150.0
Q ss_pred cCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEE
Q 037331 87 QLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNL 166 (330)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 166 (330)
.+..++.+.++.+.+. .....+..+.++..+++.+|.+... ...+..+++|++|++++|.+... ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4556666677777766 3344467788999999999998733 33377889999999999998743 234566679999
Q ss_pred EeeccccCCcCcccccCCCCCcEEEccCCccCCCCc-ccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcc
Q 037331 167 GIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIP-PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANN 245 (330)
Q Consensus 167 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~ 245 (330)
++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+. .+... . .+..+..+++..|.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~-~-~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGL-D-LLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccch-H-HHHHHHHhhccccc
Confidence 9999887643 245558889999999998874322 1 466788889999998886 33322 2 34455666888887
Q ss_pred cccccchhhccCCC--CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 246 LFGTIPNSITNASN--LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 246 ~~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
+...-+ +..+.. |+.+++++|.+. ..+..+..+..+..+++.+|.+... ..+.....+ .+.+..|.+
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~-------~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL-------EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc-------ccccccchHHHhccCcchh
Confidence 763322 223333 899999999988 4446677888999999999988776 223344445 555555554
Q ss_pred c
Q 037331 323 N 323 (330)
Q Consensus 323 ~ 323 (330)
.
T Consensus 290 ~ 290 (414)
T KOG0531|consen 290 A 290 (414)
T ss_pred c
Confidence 3
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=1.7e-09 Score=99.54 Aligned_cols=182 Identities=23% Similarity=0.279 Sum_probs=123.1
Q ss_pred CccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccC----------CcCcccccCCCCCcEEEccCCccCC
Q 037331 130 PNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQ----------GQILTEIGNLQNLEYLVLGENNLSG 199 (330)
Q Consensus 130 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~~ 199 (330)
|-.+.....|++|-+.++.+.. ......--..|++|.... ... ..+...+ .+-.|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence 5566677889999998887752 111100011233332111 000 0111111 2346677788888776
Q ss_pred CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchh-hccCCCCcEEEccCCcccCCCCccc
Q 037331 200 FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNS-ITNASNLIGLDFTSNSFSGHIPNTF 278 (330)
Q Consensus 200 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (330)
.+..++.-++.|+.|+++.|+++ ... .+- .+++|++|+|++|++. .+|.. ...|. |+.|.+++|.+.. + ..+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGI 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhH
Confidence 34456666789999999999997 444 444 7999999999999997 44542 23344 9999999998873 3 347
Q ss_pred cCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccCC
Q 037331 279 GNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICGK 327 (330)
Q Consensus 279 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~~ 327 (330)
.++.+|+.||+++|.+.+- +.+..+-.+..| .|+|++|++ .|..
T Consensus 251 e~LksL~~LDlsyNll~~h----seL~pLwsLs~L~~L~LeGNPl-~c~p 295 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEH----SELEPLWSLSSLIVLWLEGNPL-CCAP 295 (1096)
T ss_pred HhhhhhhccchhHhhhhcc----hhhhHHHHHHHHHHHhhcCCcc-ccCH
Confidence 8999999999999999887 446678888999 999999998 5543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=2.2e-09 Score=92.86 Aligned_cols=277 Identities=17% Similarity=0.108 Sum_probs=161.2
Q ss_pred ceEEEEEccCCcccccc--CCcccCCCcccEEEccCCc-cCccCchhh-ccCCCCcEEEecCc-ccccccCcc-ccCCCC
Q 037331 41 QRVTALNLLDMGLRGTI--PGHLGNLSFLVSLDISENN-FHGHLLKEL-GQLHRLRVVSFAYN-KLSGSFSSW-IGVLSK 114 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~~~~~~~~~-l~~l~~ 114 (330)
..++.|++.|+.-.+.. -.....++++++|.+.++. +++.....+ ..+++|+++++..| .+++..... ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45788888888544322 2234678999999888884 333222222 45788999988884 344333332 236889
Q ss_pred CcEEEcccCcCC-C-CCCccccCCcccceeecccccccc--cCCCCCCCCCCccEEEeecccc-CCcCcccc-cCCCCCc
Q 037331 115 LQILRLQNNSFT-G-LIPNSLFNLSRLETLRAQFNIIGG--TIPSRIGNLSKLVNLGIGFSNL-QGQILTEI-GNLQNLE 188 (330)
Q Consensus 115 L~~L~l~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~ 188 (330)
|++++++.+.-. + -+...+.++..++.+...+|.-.. .+...-..++-+.++++..|.. ++.....+ ..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999998887533 2 112234455566666666543211 0111112344455565545432 21111111 2456778
Q ss_pred EEEccCCccC-CCCccccc-CCCCCcEEEecCCc-ccccCCcchhcCCCCccEEEccCcccccc--cchhhccCCCCcEE
Q 037331 189 YLVLGENNLS-GFIPPTIF-NISTIRVLNLLGNQ-LSGHLPSTIGHSLPNIKYLTLGANNLFGT--IPNSITNASNLIGL 263 (330)
Q Consensus 189 ~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L 263 (330)
.++.+++... +..-.+++ +.++|+.+.+.+|+ ++..-...+..+++.|+.+++..+..... +...-..++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 8887775432 22222333 46889999998885 33233344555778899999888754322 22233568889999
Q ss_pred EccCCcccCCC-----CccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccc
Q 037331 264 DFTSNSFSGHI-----PNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNN 321 (330)
Q Consensus 264 ~l~~n~l~~~~-----~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~ 321 (330)
.+++|....+. ...-.....|..+.+++++.+.. ..+.++...+.| .+++-+++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----ATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH----HHHHHHhhCcccceeeeechh
Confidence 99988554222 11224566788888988887766 335667777777 77777654
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=4.8e-08 Score=80.23 Aligned_cols=189 Identities=20% Similarity=0.163 Sum_probs=99.3
Q ss_pred ccCCCCCcEEEcccCcCCCCCCc----cccCCcccceeeccccccccc----CC---------CCCCCCCCccEEEeecc
Q 037331 109 IGVLSKLQILRLQNNSFTGLIPN----SLFNLSRLETLRAQFNIIGGT----IP---------SRIGNLSKLVNLGIGFS 171 (330)
Q Consensus 109 l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~l~~~----~~---------~~~~~~~~L~~L~l~~~ 171 (330)
+.+|++|+..++++|.+....|+ .+.+-..|.+|.+++|.+.-. +. .....-|.|+.+.+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555544433332 223444555555555544310 00 11233456777777766
Q ss_pred ccCCcCc----ccccCCCCCcEEEccCCccCCCC-----cccccCCCCCcEEEecCCcccccCCcchh---cCCCCccEE
Q 037331 172 NLQGQIL----TEIGNLQNLEYLVLGENNLSGFI-----PPTIFNISTIRVLNLLGNQLSGHLPSTIG---HSLPNIKYL 239 (330)
Q Consensus 172 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L 239 (330)
++..... ..+..-..|+++.+..|.|.... -..+.++++|+.|++++|.++-.-...++ ...+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6542221 11222356777778777775321 11234577888888888876522111111 134567888
Q ss_pred EccCcccccccchhh------ccCCCCcEEEccCCcccCCCC-cc----c--cCCCCccEEEcccCccCCC
Q 037331 240 TLGANNLFGTIPNSI------TNASNLIGLDFTSNSFSGHIP-NT----F--GNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 240 ~L~~n~~~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~-~~----~--~~l~~L~~l~l~~n~l~~~ 297 (330)
.+.+|-+......++ ...|+|+.|...+|.+.+.+. .. + +.+|-|..+.+.+|.+.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 888877664433322 235677777777776554221 11 1 3566666777777777665
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=7.6e-09 Score=95.41 Aligned_cols=126 Identities=27% Similarity=0.313 Sum_probs=71.9
Q ss_pred CccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEc
Q 037331 162 KLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTL 241 (330)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L 241 (330)
+|...++++|.+. .....+.-++.++.|+|+.|.++.. ..+..++.|++|++++|.+. .+|..-..+|. |..|+|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4555566665544 3333444456666777777766532 25556667777777777665 55543222333 777777
Q ss_pred cCcccccccchhhccCCCCcEEEccCCcccC-CCCccccCCCCccEEEcccCcc
Q 037331 242 GANNLFGTIPNSITNASNLIGLDFTSNSFSG-HIPNTFGNLRHLSVLSLMMNNL 294 (330)
Q Consensus 242 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~l 294 (330)
++|.+++ +. .+..+.+|+.||+++|-+.+ .-...+..+..|+.|.+.+|++
T Consensus 240 rnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7776652 22 24566677777777776553 1111234556666777776664
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=6.4e-08 Score=71.38 Aligned_cols=107 Identities=20% Similarity=0.313 Sum_probs=72.0
Q ss_pred CcEEEccCCccCCCCccc---ccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEE
Q 037331 187 LEYLVLGENNLSGFIPPT---IFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGL 263 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 263 (330)
+..+++++|.+. .++.+ +.....|+.+++++|++. .+|+.+...+|.++.|++++|.+. .+|..++.++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344566666554 33333 334455666777777776 777766656677778888887776 667667777788888
Q ss_pred EccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 264 DFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 264 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+++.|.+. ..|..+..+.+|-.|+..+|..-.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 88877777 5566555677777777777766555
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.6e-07 Score=78.15 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=40.9
Q ss_pred CCCCcEEEccCCcccCC-CCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 257 ASNLIGLDFTSNSFSGH-IPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 257 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
+|++..+-+..|.+... .-..+..++.+.-|+++.|++.+. ..+..+..++.| -+.+.+|++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw----asvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW----ASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH----HHHHHHcCCchhheeeccCCccc
Confidence 45566666666655432 123455667777788888887766 445667777888 8888888763
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2.5e-07 Score=76.11 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=158.1
Q ss_pred ceEEEEEccCCccccc----cCCcccCCCcccEEEccCCccCc----------cCchhhccCCCCcEEEecCcccccccC
Q 037331 41 QRVTALNLLDMGLRGT----IPGHLGNLSFLVSLDISENNFHG----------HLLKELGQLHRLRVVSFAYNKLSGSFS 106 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~ 106 (330)
..++.++|+||.+... +...+.+-++|+..++++-.... ....++-+||+|+.++|+.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 6788999999988642 33446677889999988753321 223456789999999999998775544
Q ss_pred c----cccCCCCCcEEEcccCcCCCCCCccc-------------cCCcccceeecccccccccCCC-----CCCCCCCcc
Q 037331 107 S----WIGVLSKLQILRLQNNSFTGLIPNSL-------------FNLSRLETLRAQFNIIGGTIPS-----RIGNLSKLV 164 (330)
Q Consensus 107 ~----~l~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~l~~~~~~-----~~~~~~~L~ 164 (330)
. .++.-..|..|.+.+|++...--..+ ..-|.|+.+.+.+|++.. .+. .+..-.+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence 3 45677899999999998762211111 234789999999998862 221 122335889
Q ss_pred EEEeeccccCCcCcc-----cccCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCCcchh-----
Q 037331 165 NLGIGFSNLQGQILT-----EIGNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLPSTIG----- 230 (330)
Q Consensus 165 ~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----- 230 (330)
.+.+..|++...... .+..+.+|+.|++.+|-++-. +..++...+.|+.|.+.+|-++..-..+++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 999999988643222 234678999999999987632 334455677899999999987644333332
Q ss_pred cCCCCccEEEccCccccccc-ch----hh--ccCCCCcEEEccCCcccC
Q 037331 231 HSLPNIKYLTLGANNLFGTI-PN----SI--TNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 231 ~~~~~L~~L~L~~n~~~~~~-~~----~~--~~~~~L~~L~l~~n~l~~ 272 (330)
...|+|..|-+.+|.+.+.. -. .+ ...|-|..|.++||++..
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 12578899999988665321 11 11 346778888999998874
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.6e-06 Score=50.69 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=24.7
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 258 SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
++|++|++++|.+. .++..++++++|+.|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 35667777777776 4555566777777777777776655
No 54
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.01 E-value=3.1e-06 Score=50.22 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=26.4
Q ss_pred hHHHHHHhhcC-CccchhcCCCcCC--CCceeeeeeeeC
Q 037331 2 SALLAFKAHVL-DYRSALANNWSIF--YPICSCVGISCG 37 (330)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 37 (330)
+||++||+.+. ++...+.. |+.+ .+||.|.||.|.
T Consensus 6 ~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 6 QALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 68999999998 56677774 9998 799999999994
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=6.3e-05 Score=66.96 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=69.4
Q ss_pred cCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcE
Q 037331 110 GVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEY 189 (330)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 189 (330)
..+.+++.|++++|.+. .+|. -..+|+.|.++++.-...+|..+ .++|+.|.+.+|.....++ .+|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 34678888888888766 4452 22358888887654433445433 2467777777663221222 34566
Q ss_pred EEccCCccCCCCcccccC-CCCCcEEEecCCccc--ccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 190 LVLGENNLSGFIPPTIFN-ISTIRVLNLLGNQLS--GHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 190 L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
|++..+.... +.. .+.|+.|.+.++... ..++.. -+++|+.|.+++|... ..|..+. .+|+.|.++
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6665443321 111 124555555432211 011111 1356777777766544 2333222 466677666
Q ss_pred CC
Q 037331 267 SN 268 (330)
Q Consensus 267 ~n 268 (330)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.6e-07 Score=66.47 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=83.3
Q ss_pred cEEEeeccccCC--cCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEc
Q 037331 164 VNLGIGFSNLQG--QILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTL 241 (330)
Q Consensus 164 ~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L 241 (330)
..+++++|.+.. ..+..+.....|+.+++++|.+..+.+....+.+.++.+++++|.+. ++|..+. .++.|+.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhccc
Confidence 345555554331 12233455667788888888887444444445668888888888887 8888866 7888999999
Q ss_pred cCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 242 GANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 242 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+.|.+. ..|.-+..+.+|-.|+..+|.+. .++..+-.-...-.+++.++++.+-
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 988887 55666666778888888888776 3443221112223334455666655
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=3.2e-05 Score=61.17 Aligned_cols=107 Identities=24% Similarity=0.269 Sum_probs=76.0
Q ss_pred CCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCC-CccccCCCCccE
Q 037331 208 ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI-PNTFGNLRHLSV 286 (330)
Q Consensus 208 l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 286 (330)
..+...+++++|.+. .+ ..+. .+++|.+|.+.+|+++..-|..-..+++|..|.+.+|.+.+.. .+.+..+|+|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hc-ccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 346778889988875 33 2233 6889999999999998666665566788999999999887411 123678889999
Q ss_pred EEcccCccCCCCCCCcccccccccceE-EEEecc
Q 037331 287 LSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQL 319 (330)
Q Consensus 287 l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~ 319 (330)
|.+-+|++.....-- .-.+-.++.| .||.++
T Consensus 118 Ltll~Npv~~k~~YR--~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYR--LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCce--eEEEEecCcceEeehhh
Confidence 999999988773332 2335567777 777653
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=5.3e-05 Score=45.03 Aligned_cols=35 Identities=37% Similarity=0.600 Sum_probs=14.2
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCccc
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLS 222 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 222 (330)
|++|++++|.++ .+|..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.2e-05 Score=77.16 Aligned_cols=134 Identities=22% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCccEEEeeccccC-CcCccccc-CCCCCcEEEccCCccCC-CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCcc
Q 037331 161 SKLVNLGIGFSNLQ-GQILTEIG-NLQNLEYLVLGENNLSG-FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK 237 (330)
Q Consensus 161 ~~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 237 (330)
.+|+.|++++.... ...+..++ .+|+|+.|.+++-.+.. .+.....++|+|..||+++++++ .+ ..+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence 36777888764422 11112222 46888888887755431 22333456788888888888776 44 3333 677888
Q ss_pred EEEccCccccc-ccchhhccCCCCcEEEccCCcccCCC------CccccCCCCccEEEcccCccCCC
Q 037331 238 YLTLGANNLFG-TIPNSITNASNLIGLDFTSNSFSGHI------PNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 238 ~L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.|.+.+-.+.. .....+..+++|+.||+|........ .+.-..+|.|+.||.+++.+.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 88877766653 12234567888888888866443211 11224578888888887766654
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=0.00026 Score=53.13 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=34.1
Q ss_pred cccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCccc
Q 037331 60 HLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRL 139 (330)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 139 (330)
+|.++.+|+.+.+.. .+......+|..+++|+.+.+..+ +.......+..+..++.+.+.. .+.......|..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666666553 333333445555555666665553 3333334455555555555543 2222333344445555
Q ss_pred ceeecc
Q 037331 140 ETLRAQ 145 (330)
Q Consensus 140 ~~L~l~ 145 (330)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.00015 Score=57.42 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=81.0
Q ss_pred CCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCccccccc-chhhccCCCCcE
Q 037331 184 LQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI-PNSITNASNLIG 262 (330)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~ 262 (330)
..+...+++.+|.+-. -..+..++.|.+|.+.+|.++ .+.+.+...+|+|..|.|.+|++.... ..-+..||.|+.
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3466788999998752 235668899999999999999 777777767899999999999887432 123578899999
Q ss_pred EEccCCcccCCCC---ccccCCCCccEEEccc
Q 037331 263 LDFTSNSFSGHIP---NTFGNLRHLSVLSLMM 291 (330)
Q Consensus 263 L~l~~n~l~~~~~---~~~~~l~~L~~l~l~~ 291 (330)
|.+-+|.+...-- ..+..+|+|+.||...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999998774211 2367899999999874
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.0006 Score=51.15 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=18.6
Q ss_pred cCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 206 FNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 206 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
..++.++.+.+.. .+. .++...+..+++++.+.+..+ +.......+..+ .|+.+.+.
T Consensus 55 ~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 55 SNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3333444444433 222 233333323445555555433 222223333333 44444444
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.0016 Score=58.20 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=27.5
Q ss_pred ccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccC
Q 037331 61 LGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN 123 (330)
Q Consensus 61 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 123 (330)
+..+++++.|++++|.+. .++ .+ ..+|+.|.++++.-...+|..+ ..+|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344566666666666544 222 11 1246666666533222334332 135566666655
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5.7e-05 Score=72.55 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred CCCccEEEeeccccCC-cCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccc-cCCcchhcCCCCcc
Q 037331 160 LSKLVNLGIGFSNLQG-QILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSG-HLPSTIGHSLPNIK 237 (330)
Q Consensus 160 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~ 237 (330)
+|.|++|.+.+..+.. .+.....++++|..||+++++++.. ..++++++|+.|.+.+-.+.. .....++ .+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh-cccCCC
Confidence 4566666665544321 1223334566666666666666522 345556666666666554441 1122444 566666
Q ss_pred EEEccCcccccc------cchhhccCCCCcEEEccCCcccC
Q 037331 238 YLTLGANNLFGT------IPNSITNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 238 ~L~L~~n~~~~~------~~~~~~~~~~L~~L~l~~n~l~~ 272 (330)
.||+|....... .......+|.|+.||.++..+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 666666543311 11112346677777777666554
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.23 E-value=1.8e-06 Score=75.13 Aligned_cols=253 Identities=14% Similarity=0.048 Sum_probs=150.0
Q ss_pred ceEEEEEccCCcc-cccc-CCcccCCCcccEEEccCC-ccCccCchh-hccCCCCcEEEecCcc-ccc-ccCccccCCCC
Q 037331 41 QRVTALNLLDMGL-RGTI-PGHLGNLSFLVSLDISEN-NFHGHLLKE-LGQLHRLRVVSFAYNK-LSG-SFSSWIGVLSK 114 (330)
Q Consensus 41 ~~l~~L~l~~~~l-~~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~~ 114 (330)
+++++|.+.+|.. ++.. -..-..|++|+++++..| .++....+. ...+++|++++++.+. +++ .+.....++..
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 8899999999863 3221 122356899999999996 566555543 3578999999999875 332 11122345566
Q ss_pred CcEEEcccCcCCCCCCccc----cCCcccceeeccccccc-ccC-CCCCCCCCCccEEEeeccccC-CcCccc-ccCCCC
Q 037331 115 LQILRLQNNSFTGLIPNSL----FNLSRLETLRAQFNIIG-GTI-PSRIGNLSKLVNLGIGFSNLQ-GQILTE-IGNLQN 186 (330)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~l~-~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~-l~~~~~ 186 (330)
++.+...+|.-. ..+.+ ..+.-+..+++.++... +.- -..-..+.+|+.+..+++... +..... -.++.+
T Consensus 244 l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 244 LEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 667766655321 11222 23444555665555322 111 011134567777777665432 222222 236788
Q ss_pred CcEEEccCCccCCCCc-ccc-cCCCCCcEEEecCCcccccC-CcchhcCCCCccEEEccCccccccc-----chhhccCC
Q 037331 187 LEYLVLGENNLSGFIP-PTI-FNISTIRVLNLLGNQLSGHL-PSTIGHSLPNIKYLTLGANNLFGTI-----PNSITNAS 258 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~L~~n~~~~~~-----~~~~~~~~ 258 (330)
|+.+.+..|...+... ..+ .+.+.|+.+++.++...... ...+..+++.|+.+.++++...... ...-....
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 8999888876432211 112 35778999999887653121 2334447899999999987543221 11123456
Q ss_pred CCcEEEccCCccc-CCCCccccCCCCccEEEcccCccC
Q 037331 259 NLIGLDFTSNSFS-GHIPNTFGNLRHLSVLSLMMNNLT 295 (330)
Q Consensus 259 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~l~ 295 (330)
.|+.+.++++... +.....+..++.|+.+++-+++-.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 7889999998543 344456778899999999888633
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.0003 Score=58.00 Aligned_cols=99 Identities=25% Similarity=0.335 Sum_probs=45.4
Q ss_pred CCCcEEEccCCccCCCCcccccCCCCCcEEEecCC--cccccCCcchhcCCCCccEEEccCcccccccchh---hccCCC
Q 037331 185 QNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGN--QLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNS---ITNASN 259 (330)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~---~~~~~~ 259 (330)
..|+.+++.+..++.. ..+..+++|+.|.++.| ++.+.+..... .+|+|+++++++|++.. +.. +..+.+
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 3444444544444321 12334556666666666 44433333333 34666666666665541 111 233444
Q ss_pred CcEEEccCCcccCCCCc----cccCCCCccEEEc
Q 037331 260 LIGLDFTSNSFSGHIPN----TFGNLRHLSVLSL 289 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~----~~~~l~~L~~l~l 289 (330)
|..|++.+|...+ ..+ .|.-+++|+++|-
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 5555555554443 111 2344455555544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00052 Score=56.61 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=72.1
Q ss_pred CCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCc--ccccccchhhccCCCCcEEEccCCcccC-CCCccccCCCC
Q 037331 207 NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGAN--NLFGTIPNSITNASNLIGLDFTSNSFSG-HIPNTFGNLRH 283 (330)
Q Consensus 207 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~ 283 (330)
....|+.+++.+.+++ .+.. +. .+|+|++|.++.| ++.+.+......+|+|+++++++|++.. .....+..+++
T Consensus 41 ~~~~le~ls~~n~glt-t~~~-~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TLTN-FP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhcccee-eccc-CC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3456677777777765 3322 22 5789999999999 6665555555667999999999998873 11123467778
Q ss_pred ccEEEcccCccCCCCCCC-cccccccccceE-EEEeccccc
Q 037331 284 LSVLSLMMNNLTTESSSV-DRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 284 L~~l~l~~n~l~~~~~~~-~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
|..|++.+|..+.....- ..|.-+++++.| --|+.++..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence 999999998766542111 113334555555 555554443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=6.9e-05 Score=69.70 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=9.0
Q ss_pred cCCCCccEEEccCcc
Q 037331 231 HSLPNIKYLTLGANN 245 (330)
Q Consensus 231 ~~~~~L~~L~L~~n~ 245 (330)
..++.++.+.+.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 355666666666655
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00018 Score=59.89 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=34.9
Q ss_pred CccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-
Q 037331 235 NIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL- 313 (330)
Q Consensus 235 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l- 313 (330)
+.++|+..+|.+.++ . ....++.|+.|.|+-|.+.. + ..+..|++|++|.|..|.|.++ ..+.+|.++++|
T Consensus 20 ~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sl----dEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESL----DELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH-H-HHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccH----HHHHHHhcCchhh
Confidence 344444444444321 1 12334444455554444442 1 1134444455555544444444 334444455555
Q ss_pred EEEeccccc
Q 037331 314 YLYFQLNNC 322 (330)
Q Consensus 314 ~l~l~~n~~ 322 (330)
.|.|..|++
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 455544444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00023 Score=59.21 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccc-cchhhccCCCCcEEE
Q 037331 186 NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGT-IPNSITNASNLIGLD 264 (330)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ 264 (330)
+.++|++++|.++++ ....+++.|++|.++-|.++ .+.+ +. .|.+|++|.|..|.|.+. -...+..+|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-LQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-HH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445566666666532 12335666666666666665 3322 22 466666776666666531 112245566666666
Q ss_pred ccCCcccCCCCc-----cccCCCCccEEE
Q 037331 265 FTSNSFSGHIPN-----TFGNLRHLSVLS 288 (330)
Q Consensus 265 l~~n~l~~~~~~-----~~~~l~~L~~l~ 288 (330)
|..|.-.+..+. .+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 665543332221 234455555554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.011 Score=29.06 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.3
Q ss_pred CcEEEccCCccc
Q 037331 260 LIGLDFTSNSFS 271 (330)
Q Consensus 260 L~~L~l~~n~l~ 271 (330)
|++|++++|.+.
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.98 E-value=0.011 Score=55.01 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCCCCcEEEccCCc-cCCCCcccccC-CCCCcEEEecCCc-ccccCCcchhcCCCCccEEEccCccc
Q 037331 183 NLQNLEYLVLGENN-LSGFIPPTIFN-ISTIRVLNLLGNQ-LSGHLPSTIGHSLPNIKYLTLGANNL 246 (330)
Q Consensus 183 ~~~~L~~L~l~~~~-~~~~~~~~l~~-l~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~n~~ 246 (330)
.+..|+.++++.+. +++..-..+.. ++.|+.|.+.+|. +++.....+...++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 44332223322 5566666655554 34333334444566666666666544
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.98 E-value=0.036 Score=25.32 Aligned_cols=12 Identities=50% Similarity=0.537 Sum_probs=4.0
Q ss_pred ccEEEcccCccC
Q 037331 284 LSVLSLMMNNLT 295 (330)
Q Consensus 284 L~~l~l~~n~l~ 295 (330)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=0.012 Score=46.89 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=39.4
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCccccc-CCcchhcCCCCccEEEccCc-ccccccchhhccCCCCcEEE
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYLTLGAN-NLFGTIPNSITNASNLIGLD 264 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~ 264 (330)
++.++-+++.+..+.-..+..++.++.|.+.+|..-+. -...+....++|+.|+|++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44555555555444444445555555555555532211 11122223456666666655 34444444555566666665
Q ss_pred ccC
Q 037331 265 FTS 267 (330)
Q Consensus 265 l~~ 267 (330)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=0.019 Score=45.80 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCcEEEecCCcccccCCcchhcCCCCccEEEccCccccccc-chhh-ccCCCCcEEEccCC-cccCCCCccccCCCCccE
Q 037331 210 TIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI-PNSI-TNASNLIGLDFTSN-SFSGHIPNTFGNLRHLSV 286 (330)
Q Consensus 210 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 286 (330)
.++.++-+++.+..+-...+. .++.++.|.+.+|.-.+.. ..-+ +..++|+.|+|++| +|++....++.++++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 466777788777655555555 6788888888887544321 1111 24578899999988 666555566778888888
Q ss_pred EEcccCc
Q 037331 287 LSLMMNN 293 (330)
Q Consensus 287 l~l~~n~ 293 (330)
|.+.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8886543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.38 E-value=0.00093 Score=61.59 Aligned_cols=36 Identities=31% Similarity=0.262 Sum_probs=17.8
Q ss_pred CcEEEcccCcCCCCC----CccccCCcccceeeccccccc
Q 037331 115 LQILRLQNNSFTGLI----PNSLFNLSRLETLRAQFNIIG 150 (330)
Q Consensus 115 L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~ 150 (330)
+..+.+.+|.+.... ...+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 455555555554321 123334455566666655554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.0098 Score=48.55 Aligned_cols=102 Identities=20% Similarity=0.117 Sum_probs=75.7
Q ss_pred CcCCCCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCccc
Q 037331 22 WSIFYPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKL 101 (330)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 101 (330)
+|.+.++-.--.+.-.++..+++.||++.+.+. ....-|+-+..+..|+++.+.+. ..++.+..+..+..+++..|..
T Consensus 23 c~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 23 CDLSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred cCCCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch
Confidence 444444333333333455688999999988765 33455777888889999888775 5667778888888889998888
Q ss_pred ccccCccccCCCCCcEEEcccCcCC
Q 037331 102 SGSFSSWIGVLSKLQILRLQNNSFT 126 (330)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~l~~~~~~ 126 (330)
. ..|.++...+++++++...+.+.
T Consensus 101 ~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 S-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred h-hCCccccccCCcchhhhccCcch
Confidence 8 78888899999999999888765
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.66 E-value=0.49 Score=24.07 Aligned_cols=18 Identities=50% Similarity=0.704 Sum_probs=8.9
Q ss_pred CCcEEEecCCcccccCCcc
Q 037331 210 TIRVLNLLGNQLSGHLPST 228 (330)
Q Consensus 210 ~L~~L~l~~~~~~~~~~~~ 228 (330)
+|++|++++|++. .+|..
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 4455555555554 44443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.66 E-value=0.49 Score=24.07 Aligned_cols=18 Identities=50% Similarity=0.704 Sum_probs=8.9
Q ss_pred CCcEEEecCCcccccCCcc
Q 037331 210 TIRVLNLLGNQLSGHLPST 228 (330)
Q Consensus 210 ~L~~L~l~~~~~~~~~~~~ 228 (330)
+|++|++++|++. .+|..
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 4455555555554 44443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.50 E-value=0.0027 Score=58.54 Aligned_cols=180 Identities=22% Similarity=0.227 Sum_probs=79.0
Q ss_pred ccEEEccCCccCccC----chhhccCCCCcEEEecCcccccccC----ccccCC-CCCcEEEcccCcCCCC----CCccc
Q 037331 67 LVSLDISENNFHGHL----LKELGQLHRLRVVSFAYNKLSGSFS----SWIGVL-SKLQILRLQNNSFTGL----IPNSL 133 (330)
Q Consensus 67 L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~~----~~~~l 133 (330)
+..+.+.+|.+.... ..++...+.|..|++++|.+.+... ..+... +.+++|++..|.++.. ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666666555332 2334455666666776666552211 111222 4455566655555532 22333
Q ss_pred cCCcccceeecccccccc----cCCCC----CCCCCCccEEEeeccccCCcC----cccccCCCC-CcEEEccCCccCCC
Q 037331 134 FNLSRLETLRAQFNIIGG----TIPSR----IGNLSKLVNLGIGFSNLQGQI----LTEIGNLQN-LEYLVLGENNLSGF 200 (330)
Q Consensus 134 ~~l~~L~~L~l~~~~l~~----~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~~~~~ 200 (330)
.....++.++++.|.+.. .++.. +....+++++.+.++.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 344555566665554421 01111 122345555555555544211 111222333 44455555555422
Q ss_pred ----CcccccCC-CCCcEEEecCCcccccCC----cchhcCCCCccEEEccCcccc
Q 037331 201 ----IPPTIFNI-STIRVLNLLGNQLSGHLP----STIGHSLPNIKYLTLGANNLF 247 (330)
Q Consensus 201 ----~~~~l~~l-~~L~~L~l~~~~~~~~~~----~~l~~~~~~L~~L~L~~n~~~ 247 (330)
....+..+ +.++.++++.|.++..-. ..+. .++.++.+.+..|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~-~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLV-SCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHh-hhHHHHHhhcccCccc
Confidence 11112222 344555555555542211 1222 3445555555555544
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.26 E-value=0.38 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.1
Q ss_pred CccEEEccCcccc
Q 037331 235 NIKYLTLGANNLF 247 (330)
Q Consensus 235 ~L~~L~L~~n~~~ 247 (330)
+|++|+|++|.+.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.30 E-value=0.029 Score=45.88 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=42.6
Q ss_pred CCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEE
Q 037331 208 ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVL 287 (330)
Q Consensus 208 l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 287 (330)
..+.+.|+++.|++- .+-..+. -+.+++.|+++.|.+. ..|..++....+..+++..|... ..|.+++..+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchH-HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 344555555555443 2222222 3445555666655554 45555555555555555555544 455555666666666
Q ss_pred EcccCcc
Q 037331 288 SLMMNNL 294 (330)
Q Consensus 288 ~l~~n~l 294 (330)
+.-.|++
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6655554
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.21 E-value=0.7 Score=23.68 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=13.3
Q ss_pred CCccEEEcccCccCCCCC
Q 037331 282 RHLSVLSLMMNNLTTESS 299 (330)
Q Consensus 282 ~~L~~l~l~~n~l~~~~~ 299 (330)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888877744
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.12 E-value=1.6 Score=40.44 Aligned_cols=36 Identities=36% Similarity=0.510 Sum_probs=15.4
Q ss_pred CCCCcEEEecCCcccccCC--cchhcCCCCccEEEccCc
Q 037331 208 ISTIRVLNLLGNQLSGHLP--STIGHSLPNIKYLTLGAN 244 (330)
Q Consensus 208 l~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~L~~n 244 (330)
.+.+..+++++|++. .+. ..+.+..|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 344445555555443 111 112223445555555555
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.07 E-value=3.3 Score=21.24 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=11.2
Q ss_pred CCccEEEcccCccCCC
Q 037331 282 RHLSVLSLMMNNLTTE 297 (330)
Q Consensus 282 ~~L~~l~l~~n~l~~~ 297 (330)
.+|+.|+++.|.++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777777665
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.57 E-value=3.4 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=9.7
Q ss_pred CCccEEEcccCccCC
Q 037331 282 RHLSVLSLMMNNLTT 296 (330)
Q Consensus 282 ~~L~~l~l~~n~l~~ 296 (330)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456677777776654
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.67 E-value=5.1 Score=37.35 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCCCcEEEccCCccCCC--CcccccCCCCCcEEEecCCcccccCCcchh-cCCCCccEEEccCcccccc
Q 037331 183 NLQNLEYLVLGENNLSGF--IPPTIFNISTIRVLNLLGNQLSGHLPSTIG-HSLPNIKYLTLGANNLFGT 249 (330)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~~L~~L~L~~n~~~~~ 249 (330)
+.+.+..+++++|++... +..-....|.|+.|+|++|+..-....++. -....|++|.+.+|.+.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 456677777777776421 111122456777888887722101111111 0234577777777777643
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.06 E-value=11 Score=18.92 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=5.4
Q ss_pred CCccEEEcccC
Q 037331 282 RHLSVLSLMMN 292 (330)
Q Consensus 282 ~~L~~l~l~~n 292 (330)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.45 E-value=1.6e+02 Score=27.52 Aligned_cols=278 Identities=14% Similarity=0.017 Sum_probs=132.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhc---cCCCCcEEEecCcccccccCccccC---CCC
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELG---QLHRLRVVSFAYNKLSGSFSSWIGV---LSK 114 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~l~~---l~~ 114 (330)
+.++.++++.+.+...+|.++-.-.+= +.+..|..+..+...+. .-..+++++++.+...+.+|..+.. -.-
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 667888999888877766654322111 55555554432221111 1124677888888777666654332 234
Q ss_pred CcEEEcccCcCC-C--CCCccccCCcccceeecccccccc----cCCC----CCCCCCCccEEEeeccccCCcCcccc-c
Q 037331 115 LQILRLQNNSFT-G--LIPNSLFNLSRLETLRAQFNIIGG----TIPS----RIGNLSKLVNLGIGFSNLQGQILTEI-G 182 (330)
Q Consensus 115 L~~L~l~~~~~~-~--~~~~~l~~l~~L~~L~l~~~~l~~----~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l-~ 182 (330)
++.++.+...+. + ..+.....-..+++.+++.+.... ..+. .+..-+++ +|++..+.....-...+ -
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 566666665543 1 112222334467777776554321 1111 12222344 55555444332211111 0
Q ss_pred -----CCCCCcEEEccCCccCCC-CcccccCCCCCcEEEecCCcccccCCcchh-cCCCCccEEEccCccccc-cc----
Q 037331 183 -----NLQNLEYLVLGENNLSGF-IPPTIFNISTIRVLNLLGNQLSGHLPSTIG-HSLPNIKYLTLGANNLFG-TI---- 250 (330)
Q Consensus 183 -----~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~~L~~L~L~~n~~~~-~~---- 250 (330)
.-+.=-++++..|...+. ...+-..-.++++|.+..|...++...... ..-+..+.+.+....-.. ..
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~ 401 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTE 401 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccccc
Confidence 000111344444444321 111111223588888888876654433221 123456666655432210 11
Q ss_pred --chhh--ccCCCCcEEEccCCcccCCCC---ccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 251 --PNSI--TNASNLIGLDFTSNSFSGHIP---NTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 251 --~~~~--~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
+... ...--+..+.++.|......- .....-+.+..+++++|........+.. +.++.-..+ .+..+.|-.
T Consensus 402 a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lp-kalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 402 APPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLP-KALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred chhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCc-cccCCCCccCCCCCCCCCc
Confidence 1111 112346777888777653222 2234557899999999977665433311 334444445 555544433
No 90
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=30.48 E-value=60 Score=26.72 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=4.6
Q ss_pred CccEEEccCccc
Q 037331 235 NIKYLTLGANNL 246 (330)
Q Consensus 235 ~L~~L~L~~n~~ 246 (330)
+++--.|.+|++
T Consensus 197 N~eGA~L~gcNf 208 (302)
T KOG1665|consen 197 NAEGASLKGCNF 208 (302)
T ss_pred ccccccccCcCC
Confidence 333333333333
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.03 E-value=38 Score=38.41 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.6
Q ss_pred EccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 240 TLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 240 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
+|++|++....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47888888666677888889999999988654
Done!