Query 037331
Match_columns 330
No_of_seqs 177 out of 3457
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-39 5.2E-44 283.9 18.6 286 2-293 9-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 3E-37 1E-41 300.1 21.6 310 2-323 15-381 (768)
3 4eco_A Uncharacterized protein 100.0 2.1E-37 7.3E-42 295.0 16.6 288 2-296 33-447 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 6E-35 2E-39 283.8 17.2 312 2-327 272-745 (876)
5 3rgz_A Protein brassinosteroid 100.0 4.8E-34 1.7E-38 277.6 23.2 278 42-324 369-718 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1.6E-33 5.5E-38 258.4 23.4 277 41-323 30-408 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.1E-32 3.7E-37 254.4 22.3 277 41-323 32-333 (477)
8 2id5_A Lingo-1, leucine rich r 100.0 3.1E-32 1.1E-36 251.3 21.7 257 40-297 55-335 (477)
9 4fcg_A Uncharacterized protein 100.0 2.7E-32 9.2E-37 239.5 19.2 274 2-297 30-316 (328)
10 3o6n_A APL1; leucine-rich repe 100.0 1.1E-31 3.9E-36 241.3 20.0 270 41-323 45-352 (390)
11 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-32 2.3E-36 235.5 15.4 254 65-328 50-308 (313)
12 3oja_B Anopheles plasmodium-re 100.0 5.7E-31 2E-35 249.2 20.2 270 41-323 51-358 (597)
13 3t6q_A CD180 antigen; protein- 100.0 1.8E-30 6E-35 246.5 22.6 275 41-323 278-560 (606)
14 3t6q_A CD180 antigen; protein- 100.0 5.2E-30 1.8E-34 243.3 25.0 279 42-327 255-540 (606)
15 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-30 2E-34 242.9 23.7 109 41-149 56-165 (606)
16 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.9E-34 222.5 23.3 269 41-320 52-329 (330)
17 4eco_A Uncharacterized protein 100.0 2.4E-30 8.3E-35 246.3 18.5 277 40-328 248-584 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-30 8.3E-35 242.7 17.3 278 41-325 26-425 (549)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-29 4E-34 249.2 21.6 282 39-326 22-378 (844)
20 3v47_A TOLL-like receptor 5B a 100.0 3.2E-29 1.1E-33 229.7 22.1 256 41-297 54-410 (455)
21 1xku_A Decorin; proteoglycan, 100.0 1E-28 3.5E-33 217.1 24.1 271 41-324 31-307 (330)
22 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-29 1.3E-33 219.9 21.4 269 41-321 54-331 (332)
23 2z7x_B TOLL-like receptor 1, v 100.0 7E-29 2.4E-33 231.3 22.2 155 161-323 324-481 (520)
24 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-29 1.3E-33 233.1 19.3 106 41-149 21-127 (520)
25 2z80_A TOLL-like receptor 2, v 100.0 1.6E-29 5.3E-34 224.4 15.9 274 22-297 23-316 (353)
26 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-28 5.6E-33 233.8 23.0 131 41-171 52-183 (635)
27 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.9E-33 242.1 22.3 275 41-326 48-397 (844)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-28 4.5E-33 231.5 21.8 108 41-151 52-160 (562)
29 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-28 4.5E-33 236.6 22.1 250 41-291 25-305 (680)
30 2z63_A TOLL-like receptor 4, v 100.0 9.5E-29 3.2E-33 232.8 20.4 109 41-149 52-161 (570)
31 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.3E-33 216.7 19.4 269 41-323 33-307 (332)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-28 1E-32 229.1 23.0 274 39-323 74-510 (562)
33 4ecn_A Leucine-rich repeat pro 100.0 1.3E-28 4.4E-33 239.4 21.1 274 40-327 490-823 (876)
34 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-28 1.8E-32 232.4 24.9 254 43-297 250-575 (680)
35 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-28 5.2E-33 230.5 19.8 286 39-326 48-467 (549)
36 2z63_A TOLL-like receptor 4, v 100.0 5.4E-28 1.8E-32 227.7 21.1 90 39-128 74-164 (570)
37 3o6n_A APL1; leucine-rich repe 100.0 1.1E-27 3.7E-32 215.3 21.9 291 21-326 5-334 (390)
38 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-28 8.7E-33 231.6 18.5 269 41-324 285-559 (606)
39 4fmz_A Internalin; leucine ric 100.0 1.1E-27 3.7E-32 212.0 21.3 261 40-323 65-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 1.9E-27 6.5E-32 210.4 21.1 261 41-325 44-326 (347)
41 3zyj_A Leucine-rich repeat-con 100.0 7E-27 2.4E-31 213.3 23.1 247 43-295 45-292 (440)
42 3zyi_A Leucine-rich repeat-con 100.0 7.6E-27 2.6E-31 213.8 23.4 248 44-297 57-305 (452)
43 2z66_A Variable lymphocyte rec 100.0 2.1E-27 7.3E-32 206.4 18.7 231 65-297 28-263 (306)
44 4fcg_A Uncharacterized protein 100.0 4.1E-27 1.4E-31 206.5 20.0 287 8-326 22-317 (328)
45 2z80_A TOLL-like receptor 2, v 100.0 1.6E-27 5.5E-32 211.4 17.4 269 45-323 35-314 (353)
46 2z66_A Variable lymphocyte rec 100.0 2.7E-27 9.4E-32 205.7 18.4 245 27-273 5-263 (306)
47 3oja_B Anopheles plasmodium-re 100.0 6.4E-27 2.2E-31 221.4 21.3 294 17-326 8-340 (597)
48 3zyj_A Leucine-rich repeat-con 100.0 1.3E-26 4.4E-31 211.5 22.1 247 66-323 44-292 (440)
49 3zyi_A Leucine-rich repeat-con 99.9 1.7E-26 5.7E-31 211.5 22.3 247 66-323 55-303 (452)
50 1wwl_A Monocyte differentiatio 99.9 6.3E-29 2.2E-33 216.7 5.3 203 112-325 94-311 (312)
51 1o6v_A Internalin A; bacterial 99.9 4E-26 1.4E-30 209.8 22.9 78 41-124 68-145 (466)
52 1o6v_A Internalin A; bacterial 99.9 6.7E-26 2.3E-30 208.3 22.8 262 39-326 88-391 (466)
53 1ozn_A Reticulon 4 receptor; N 99.9 8.8E-27 3E-31 200.5 15.4 224 44-271 14-238 (285)
54 1wwl_A Monocyte differentiatio 99.9 3.8E-28 1.3E-32 211.7 5.7 267 21-297 23-311 (312)
55 1ozn_A Reticulon 4 receptor; N 99.9 9.5E-26 3.3E-30 194.0 20.1 226 68-297 14-240 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.2E-32 208.9 6.4 258 41-318 10-270 (317)
57 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-25 2.9E-29 208.2 23.4 143 52-197 42-185 (635)
58 3bz5_A Internalin-J, INLJ; leu 99.9 3E-24 1E-28 196.4 21.2 254 40-325 63-354 (457)
59 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-24 1E-28 196.4 20.8 225 41-294 42-266 (457)
60 2o6q_A Variable lymphocyte rec 99.9 2.4E-24 8.4E-29 183.7 18.7 216 27-247 3-218 (270)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-25 4.4E-30 196.1 10.3 239 66-323 11-250 (317)
62 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.9E-29 200.8 14.5 219 62-295 31-250 (487)
63 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-24 1.6E-28 201.0 17.7 268 13-324 7-298 (622)
64 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.6E-28 179.2 19.0 207 65-297 28-239 (276)
65 3oja_A Leucine-rich immune mol 99.9 3.5E-25 1.2E-29 204.3 8.8 235 41-290 34-270 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.2E-28 178.1 18.9 203 114-323 29-237 (276)
67 2o6q_A Variable lymphocyte rec 99.9 7.4E-23 2.5E-27 174.5 21.2 183 114-297 38-220 (270)
68 1jl5_A Outer protein YOPM; leu 99.9 1.2E-23 3.9E-28 192.3 16.0 227 41-298 34-273 (454)
69 1jl5_A Outer protein YOPM; leu 99.9 2.3E-22 7.9E-27 183.7 22.7 254 42-325 132-411 (454)
70 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-26 5.2E-31 212.3 -5.7 282 42-325 86-413 (461)
71 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 172.1 19.1 203 61-271 6-208 (290)
72 1z7x_W Ribonuclease inhibitor; 99.9 4.1E-26 1.4E-30 209.4 -6.5 280 41-323 56-383 (461)
73 1p9a_G Platelet glycoprotein I 99.9 1.2E-21 4.1E-26 168.7 19.0 200 41-248 10-209 (290)
74 2ast_B S-phase kinase-associat 99.9 6.7E-25 2.3E-29 193.1 -1.5 263 24-297 32-308 (336)
75 3goz_A Leucine-rich repeat-con 99.9 2.5E-24 8.7E-29 191.4 2.1 252 46-297 3-299 (362)
76 3rfs_A Internalin B, repeat mo 99.9 4.9E-22 1.7E-26 169.6 16.0 210 62-283 38-247 (272)
77 3rfs_A Internalin B, repeat mo 99.9 5.4E-22 1.8E-26 169.4 15.8 207 41-259 41-247 (272)
78 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.9E-27 175.7 12.3 201 113-324 91-308 (310)
79 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 164.6 16.5 190 27-222 3-192 (251)
80 2ca6_A RAN GTPase-activating p 99.9 3E-24 1E-28 192.6 -1.2 241 56-297 23-318 (386)
81 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.4E-26 162.8 15.9 199 66-292 32-236 (239)
82 2ast_B S-phase kinase-associat 99.9 3.1E-23 1.1E-27 182.4 5.0 251 65-328 47-311 (336)
83 4glp_A Monocyte differentiatio 99.9 3.5E-22 1.2E-26 173.8 11.4 227 64-297 63-309 (310)
84 3goz_A Leucine-rich repeat-con 99.9 4.6E-23 1.6E-27 183.2 5.9 254 70-325 3-299 (362)
85 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-21 1.6E-25 180.6 19.6 245 41-322 61-327 (622)
86 1h6u_A Internalin H; cell adhe 99.9 5.8E-21 2E-25 165.9 16.8 193 62-271 38-230 (308)
87 2xwt_C Thyrotropin receptor; s 99.9 6.1E-21 2.1E-25 159.7 16.2 179 41-222 31-218 (239)
88 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.1E-25 158.0 18.2 178 90-271 15-192 (251)
89 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.6E-25 162.6 16.4 213 67-298 21-233 (308)
90 2ca6_A RAN GTPase-activating p 99.8 1.4E-22 4.7E-27 181.8 1.6 251 41-291 32-339 (386)
91 4ay9_X Follicle-stimulating ho 99.8 3.9E-19 1.3E-23 157.2 18.0 221 65-291 30-255 (350)
92 3ogk_B Coronatine-insensitive 99.8 2.7E-22 9.1E-27 189.7 -2.6 138 184-326 377-529 (592)
93 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 9.9E-24 158.0 15.9 237 69-320 13-256 (350)
94 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 146.2 11.8 183 26-230 4-186 (208)
95 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.1E-24 168.5 10.9 214 11-256 26-252 (571)
96 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.4E-23 162.2 14.9 203 90-323 60-274 (571)
97 2o6s_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 140.4 14.1 163 113-283 28-190 (208)
98 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.7E-23 148.7 13.5 189 67-272 26-214 (291)
99 2v9t_B SLIT homolog 2 protein 99.8 8.3E-18 2.8E-22 138.7 14.1 136 161-297 32-167 (220)
100 1h6t_A Internalin B; cell adhe 99.8 8.6E-18 2.9E-22 144.6 14.5 186 95-297 30-215 (291)
101 3e6j_A Variable lymphocyte rec 99.7 1.5E-17 5.3E-22 138.0 13.9 162 22-199 12-173 (229)
102 3ogk_B Coronatine-insensitive 99.7 4.5E-20 1.5E-24 174.4 -2.0 82 87-169 162-251 (592)
103 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.6E-22 155.8 13.9 193 64-273 20-212 (605)
104 2p1m_B Transport inhibitor res 99.7 1.4E-19 4.7E-24 171.1 -1.0 134 184-323 371-519 (594)
105 3e6j_A Variable lymphocyte rec 99.7 8.4E-17 2.9E-21 133.5 15.8 135 161-297 40-174 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 4.7E-17 1.6E-21 134.1 14.2 115 181-296 53-167 (220)
107 4ezg_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 132.0 13.8 152 158-323 41-194 (197)
108 2xot_A Amphoterin-induced prot 99.7 1.6E-17 5.5E-22 147.4 12.0 176 116-295 21-202 (361)
109 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 133.0 12.5 152 136-296 43-195 (197)
110 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.3E-22 146.2 13.0 177 68-248 21-203 (361)
111 1m9s_A Internalin B; cell inva 99.7 3.5E-17 1.2E-21 154.0 14.4 190 43-249 23-212 (605)
112 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.8E-21 131.3 14.4 150 45-197 15-164 (220)
113 1dce_A Protein (RAB geranylger 99.7 1E-19 3.5E-24 170.2 -6.4 123 186-316 442-566 (567)
114 2p1m_B Transport inhibitor res 99.7 4.4E-19 1.5E-23 167.6 -3.1 277 41-324 105-495 (594)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 3.5E-16 1.2E-20 128.9 13.9 151 45-198 15-166 (220)
116 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 138.6 7.7 170 88-273 18-187 (263)
117 1xeu_A Internalin C; cellular 99.7 7E-17 2.4E-21 136.8 9.0 171 111-297 17-187 (263)
118 3sb4_A Hypothetical leucine ri 99.7 7.3E-17 2.5E-21 141.3 8.8 196 112-313 100-326 (329)
119 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.3E-22 160.0 3.4 160 27-198 161-329 (727)
120 3sb4_A Hypothetical leucine ri 99.7 5.8E-16 2E-20 135.6 11.5 203 82-289 86-328 (329)
121 1dce_A Protein (RAB geranylger 99.6 1.8E-18 6.2E-23 161.8 -5.0 191 86-289 346-567 (567)
122 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 119.9 9.9 134 161-297 24-162 (168)
123 4fdw_A Leucine rich hypothetic 99.6 5.5E-14 1.9E-18 125.9 19.5 265 41-322 113-382 (401)
124 2ell_A Acidic leucine-rich nuc 99.6 7.2E-15 2.5E-19 115.7 12.0 135 137-276 24-164 (168)
125 1w8a_A SLIT protein; signaling 99.6 6.2E-15 2.1E-19 118.8 11.2 130 164-297 11-141 (192)
126 4fdw_A Leucine rich hypothetic 99.6 8.5E-14 2.9E-18 124.7 19.7 243 64-325 112-360 (401)
127 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.2E-19 116.0 12.5 129 164-297 13-141 (193)
128 1w8a_A SLIT protein; signaling 99.6 1.9E-14 6.3E-19 115.9 12.5 131 140-274 11-142 (192)
129 2je0_A Acidic leucine-rich nuc 99.6 6.1E-15 2.1E-19 113.7 8.6 125 162-289 18-147 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 1.8E-14 6.3E-19 111.0 10.0 127 137-267 17-149 (149)
131 4b8c_D Glucose-repressible alc 99.5 1E-15 3.5E-20 147.4 3.0 181 65-251 173-358 (727)
132 2wfh_A SLIT homolog 2 protein 99.5 6.6E-14 2.3E-18 112.7 12.9 127 140-271 13-139 (193)
133 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 110.0 13.1 131 163-297 9-139 (177)
134 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 109.1 13.8 130 140-273 10-139 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.3E-19 113.9 7.2 132 157-295 15-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 111.7 7.4 134 182-322 16-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.2E-20 121.5 -5.1 84 184-271 69-153 (198)
138 3g39_A Variable lymphocyte rec 99.4 3.4E-12 1.1E-16 100.5 11.2 107 187-297 11-117 (170)
139 3g39_A Variable lymphocyte rec 99.4 2.6E-12 9.1E-17 101.1 10.0 105 210-323 10-115 (170)
140 2r9u_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 100.2 10.0 108 187-298 14-121 (174)
141 2r9u_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 98.3 11.4 106 163-272 14-119 (174)
142 1ds9_A Outer arm dynein; leuci 99.3 1.3E-14 4.6E-19 117.4 -5.6 64 84-150 43-106 (198)
143 4fs7_A Uncharacterized protein 99.3 1.6E-10 5.5E-15 103.4 17.2 245 41-297 71-357 (394)
144 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 106.0 9.1 105 189-297 12-118 (347)
145 3un9_A NLR family member X1; l 99.2 1.5E-13 5E-18 122.0 -6.6 111 112-222 71-196 (372)
146 3un9_A NLR family member X1; l 99.2 2.9E-13 1E-17 120.1 -5.6 161 136-297 71-254 (372)
147 4gt6_A Cell surface protein; l 99.2 1.2E-09 4.1E-14 97.8 17.3 244 42-293 65-368 (394)
148 4fs7_A Uncharacterized protein 99.2 8.7E-10 3E-14 98.7 15.9 241 41-292 94-376 (394)
149 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.5E-15 101.6 9.2 103 212-323 11-116 (347)
150 4gt6_A Cell surface protein; l 99.1 6E-09 2E-13 93.2 18.9 252 56-321 54-368 (394)
151 4h09_A Hypothetical leucine ri 98.9 1E-07 3.6E-12 84.6 19.6 78 41-123 46-123 (379)
152 2ra8_A Uncharacterized protein 98.9 6.5E-10 2.2E-14 97.9 5.2 157 132-293 167-341 (362)
153 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.5E-14 94.5 5.6 85 183-269 250-341 (362)
154 4h09_A Hypothetical leucine ri 98.8 4.9E-07 1.7E-11 80.2 18.8 241 40-292 68-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 4.7E-08 1.6E-12 77.7 1.9 115 180-295 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 78.3 0.2 120 202-324 29-165 (185)
157 3e4g_A ATP synthase subunit S, 98.3 4.4E-07 1.5E-11 70.6 3.4 84 41-124 61-150 (176)
158 3e4g_A ATP synthase subunit S, 98.3 3.9E-07 1.3E-11 71.0 2.9 83 210-293 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.0 8.4E-07 2.9E-11 74.3 0.3 64 232-297 168-235 (267)
160 3rw6_A Nuclear RNA export fact 98.0 5.1E-06 1.7E-10 69.5 5.0 79 207-288 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 5.7E-05 1.9E-09 59.9 0.9 111 182-293 38-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00048 1.6E-08 54.5 1.4 111 160-270 40-169 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0075 2.6E-07 44.3 5.5 56 213-271 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.027 9.3E-07 41.3 6.0 57 188-247 11-68 (130)
165 2lz0_A Uncharacterized protein 69.6 4.9 0.00017 27.5 3.7 44 224-268 10-53 (100)
166 2lz0_A Uncharacterized protein 68.2 13 0.00044 25.3 5.6 47 52-99 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-39 Score=283.94 Aligned_cols=286 Identities=28% Similarity=0.447 Sum_probs=232.7
Q ss_pred hHHHHHHhhcCCccchhcCCCcCCCCcee--eeeeeeCCCC--ceEEEEEccCCcccc--ccCCcccCCCcccEEEccC-
Q 037331 2 SALLAFKAHVLDYRSALANNWSIFYPICS--CVGISCGSRH--QRVTALNLLDMGLRG--TIPGHLGNLSFLVSLDISE- 74 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~- 74 (330)
.|+++||+.+.||. ++.. |+.+.+||. |.|+.|.... .++++|+++++.+.+ .+|..|.++++|++|++++
T Consensus 9 ~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~ 86 (313)
T 1ogq_A 9 QALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86 (313)
T ss_dssp HHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE
T ss_pred HHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC
Confidence 58999999998876 7885 999999998 9999998654 789999999999998 8899999999999999995
Q ss_pred CccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCC
Q 037331 75 NNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIP 154 (330)
Q Consensus 75 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 154 (330)
+.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 88887888889999999999999999998888889999999999999999988888889999999999999998887778
Q ss_pred CCCCCCC-CccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCC
Q 037331 155 SRIGNLS-KLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSL 233 (330)
Q Consensus 155 ~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 233 (330)
..+..++ +|+.|++++|.+....+..+..+. |+.|++++|.+++..+..+..+++|+.|++++|.+++.++. +. .+
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l 243 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LS 243 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CC
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-cc
Confidence 7777776 788888887777666666666665 77777777777766677777777777777777777644433 33 56
Q ss_pred CCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCc
Q 037331 234 PNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNN 293 (330)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 293 (330)
++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.. ..+++|+.+++++|+
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77777777777777667777777777777777777777666664 667777777777775
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-37 Score=300.08 Aligned_cols=310 Identities=26% Similarity=0.384 Sum_probs=199.1
Q ss_pred hHHHHHHhhcCCccchhcCCCcCCCCceeeeeeeeCCCCceEEEEEccCCccccc---cC--------------------
Q 037331 2 SALLAFKAHVLDYRSALANNWSIFYPICSCVGISCGSRHQRVTALNLLDMGLRGT---IP-------------------- 58 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~-------------------- 58 (330)
+|+++||+.+.||. +++ +|..+.+||.|.|+.|. ..+++.|+++++.+.+. ++
T Consensus 15 ~all~~k~~~~~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~ 90 (768)
T 3rgz_A 15 HQLISFKDVLPDKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90 (768)
T ss_dssp HHHHHHHTTCSCTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE
T ss_pred HHHHHHHhhCCCcc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC
Confidence 58999999999988 888 59989999999999998 47899999999987765 33
Q ss_pred ---CcccCCCcccEEEccCCccCccCch--hhccCCCCcEEEecCcccccccCccc-cCCCCCcEEEcccCcCCCCCCcc
Q 037331 59 ---GHLGNLSFLVSLDISENNFHGHLLK--ELGQLHRLRVVSFAYNKLSGSFSSWI-GVLSKLQILRLQNNSFTGLIPNS 132 (330)
Q Consensus 59 ---~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~ 132 (330)
..|..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 4677788888888888888766666 78888888888888888876666554 67778888888888776555544
Q ss_pred ---ccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCC
Q 037331 133 ---LFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNIS 209 (330)
Q Consensus 133 ---l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 209 (330)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+....+. +..+++|++|++++|.+++..|..+..++
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 247 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCT 247 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCS
T ss_pred hhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCC
Confidence 5556666666666665543322 24455555555555555443333 55555555555555555544444455555
Q ss_pred CCcEEEecCCc----------------------ccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccC
Q 037331 210 TIRVLNLLGNQ----------------------LSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTS 267 (330)
Q Consensus 210 ~L~~L~l~~~~----------------------~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 267 (330)
+|++|++++|. +++.+|..++..+++|++|++++|.+.+.+|..++.+++|+.|++++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 55555555554 44444444442335555555555555555555555555666666666
Q ss_pred CcccCCCCcc-ccCCCCccEEEcccCccCCCCCCCcccccccccc-eE-EEEecccccc
Q 037331 268 NSFSGHIPNT-FGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFT-LL-YLYFQLNNCN 323 (330)
Q Consensus 268 n~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~-~l-~l~l~~n~~~ 323 (330)
|.+.+.+|.. +..+++|++|++++|.+++. .+.. +..++ .| .+++++|+++
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~--~p~~---l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGE--LPES---LTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEEC--CCTT---HHHHTTTCSEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCcc--ccHH---HHhhhcCCcEEEccCCCcC
Confidence 6555444433 55556666666666655543 3322 23333 55 6666666654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-37 Score=294.96 Aligned_cols=288 Identities=22% Similarity=0.293 Sum_probs=215.7
Q ss_pred hHHHHHHhhcCCccchhc-------CCCcCCCCceee---eeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEE
Q 037331 2 SALLAFKAHVLDYRSALA-------NNWSIFYPICSC---VGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLD 71 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 71 (330)
.|+++++.+..++.-.+. .+|+.++++|.| .|+.|... .+++.|+|.++++.|.+|+.++++++|+.|+
T Consensus 33 ~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~ 111 (636)
T 4eco_A 33 LALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLA 111 (636)
T ss_dssp HHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEE
T ss_pred HHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEE
Confidence 588899988865532222 269999999999 99999765 7999999999999999999999999999999
Q ss_pred ccCCcc--------------------------------------------------------------------------
Q 037331 72 ISENNF-------------------------------------------------------------------------- 77 (330)
Q Consensus 72 l~~~~~-------------------------------------------------------------------------- 77 (330)
+++|.+
T Consensus 112 Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~ 191 (636)
T 4eco_A 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191 (636)
T ss_dssp SCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCC
T ss_pred CcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccc
Confidence 998843
Q ss_pred ----CccCchhhccCCCCcEEEecCcccccc-----------------cCcccc--CCCCCcEEEcccCcCCCCCCcccc
Q 037331 78 ----HGHLLKELGQLHRLRVVSFAYNKLSGS-----------------FSSWIG--VLSKLQILRLQNNSFTGLIPNSLF 134 (330)
Q Consensus 78 ----~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~ 134 (330)
++ ++..+.++++|++|++++|.+++. +|..+. .+++|++|++++|.+.+..|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 22 556788899999999999999974 888888 999999999999999889999999
Q ss_pred CCcccceeeccccc-ccc-cCCCCCCCC------CCccEEEeeccccCCcCcc--cccCCCCCcEEEccCCccCCCCccc
Q 037331 135 NLSRLETLRAQFNI-IGG-TIPSRIGNL------SKLVNLGIGFSNLQGQILT--EIGNLQNLEYLVLGENNLSGFIPPT 204 (330)
Q Consensus 135 ~l~~L~~L~l~~~~-l~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~ 204 (330)
.+++|++|++++|. +.+ .+|..+..+ ++|+.|++++|.+. .++. .+..+++|+.|++++|.+++.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99999999999998 776 667666554 78888888888877 6666 67888888888888888776666 6
Q ss_pred ccCCCCCcEEEecCCcccccCCcchhcCCCC-ccEEEccCcccccccchhhccCC--CCcEEEccCCcccCCCCcccc--
Q 037331 205 IFNISTIRVLNLLGNQLSGHLPSTIGHSLPN-IKYLTLGANNLFGTIPNSITNAS--NLIGLDFTSNSFSGHIPNTFG-- 279 (330)
Q Consensus 205 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-- 279 (330)
+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|..|.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 666666677777766666 5665544 4555 666666666655 4444443322 555555555555544444444
Q ss_pred -----CCCCccEEEcccCccCC
Q 037331 280 -----NLRHLSVLSLMMNNLTT 296 (330)
Q Consensus 280 -----~l~~L~~l~l~~n~l~~ 296 (330)
.+++|++|++++|.+++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISK 447 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCS
T ss_pred ccccccCCCCCEEECcCCccCc
Confidence 44455555555555443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6e-35 Score=283.78 Aligned_cols=312 Identities=21% Similarity=0.291 Sum_probs=223.5
Q ss_pred hHHHHHHhhcCCccchhcCCCcCCC-----Cc--eee------------eeeeeCCCCceEEEEEccCCccccccCCccc
Q 037331 2 SALLAFKAHVLDYRSALANNWSIFY-----PI--CSC------------VGISCGSRHQRVTALNLLDMGLRGTIPGHLG 62 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~ 62 (330)
.|+++||+++.|| +|+.+. ++ |.| .|+.|.. ..+++.|+|+++++.|.+|+.++
T Consensus 272 ~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~ 344 (876)
T 4ecn_A 272 KALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIG 344 (876)
T ss_dssp HHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGG
T ss_pred HHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHh
Confidence 5899999999777 365443 56 999 9999986 48899999999999999999999
Q ss_pred CCCcccEEEc-cCCccCcc-------------------------------------------------------------
Q 037331 63 NLSFLVSLDI-SENNFHGH------------------------------------------------------------- 80 (330)
Q Consensus 63 ~~~~L~~L~l-~~~~~~~~------------------------------------------------------------- 80 (330)
++++|+.|+| ++|.+.+.
T Consensus 345 ~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~ 424 (876)
T 4ecn_A 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424 (876)
T ss_dssp GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCC
T ss_pred ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccc
Confidence 9999999999 65533211
Q ss_pred ---------------CchhhccCCCCcEEEecCccccc-----------------ccCcccc--CCCCCcEEEcccCcCC
Q 037331 81 ---------------LLKELGQLHRLRVVSFAYNKLSG-----------------SFSSWIG--VLSKLQILRLQNNSFT 126 (330)
Q Consensus 81 ---------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~ 126 (330)
++..|.++++|+.|++++|.+++ .+|..+. .+++|++|++++|.+.
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 56678889999999999999997 2788877 9999999999999988
Q ss_pred CCCCccccCCcccceeeccccc-ccc-cCCCCC-------CCCCCccEEEeeccccCCcCcc--cccCCCCCcEEEccCC
Q 037331 127 GLIPNSLFNLSRLETLRAQFNI-IGG-TIPSRI-------GNLSKLVNLGIGFSNLQGQILT--EIGNLQNLEYLVLGEN 195 (330)
Q Consensus 127 ~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~ 195 (330)
+..|..+..+++|++|++++|. +.+ .+|..+ ..+++|+.|++++|.+. .++. .+..+++|+.|++++|
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence 8899999999999999999997 665 455433 33447888888877777 5555 6777777777777777
Q ss_pred ccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCC-ccEEEccCcccccccchhhccC-----------------
Q 037331 196 NLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPN-IKYLTLGANNLFGTIPNSITNA----------------- 257 (330)
Q Consensus 196 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~----------------- 257 (330)
.++ .+| .+..+++|+.|++++|.+. .+|..+. .+++ |+.|+|++|.+. .+|..+...
T Consensus 584 ~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 584 KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 776 555 6666777777777777776 6666555 4555 666666666665 444443332
Q ss_pred --------------CCCcEEEccCCcccCCCCcc-ccCCCCccEEEcccCccCCCCCCCccc--ccccccceE-EEEecc
Q 037331 258 --------------SNLIGLDFTSNSFSGHIPNT-FGNLRHLSVLSLMMNNLTTESSSVDRW--SFLSSFTLL-YLYFQL 319 (330)
Q Consensus 258 --------------~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~~~--~~l~~l~~l-~l~l~~ 319 (330)
++|+.|++++|.+. .+|.. +..+++|+.|++++|.++.+|...... ..+.+++.| .|+|++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 24555555555554 23332 335667777777777776553322110 013345577 777887
Q ss_pred ccccccCC
Q 037331 320 NNCNICGK 327 (330)
Q Consensus 320 n~~~~~~~ 327 (330)
|+++.++.
T Consensus 738 N~L~~lp~ 745 (876)
T 4ecn_A 738 NKLTSLSD 745 (876)
T ss_dssp SCCCCCCG
T ss_pred CCCccchH
Confidence 77776543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-34 Score=277.55 Aligned_cols=278 Identities=32% Similarity=0.455 Sum_probs=226.7
Q ss_pred eEEEEEccCCccccccCCcccC--CCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 42 RVTALNLLDMGLRGTIPGHLGN--LSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
+++.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 4555555555555444444444 56677777777777666777788888888888888888878888888888888888
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCC
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG 199 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 199 (330)
+++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 88888888888888888888888888888887888888888888999998888887788888888889999999988887
Q ss_pred CCcccccCCCCCcEEEecCCcccccCCcchhc------------------------------------------------
Q 037331 200 FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGH------------------------------------------------ 231 (330)
Q Consensus 200 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~------------------------------------------------ 231 (330)
.+|..+..+++|+.|++++|.+.+.+|..++.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 88888888889999999998887777765431
Q ss_pred ---------------------CCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcc
Q 037331 232 ---------------------SLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLM 290 (330)
Q Consensus 232 ---------------------~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 290 (330)
.++.|+.|++++|++.+.+|..++.++.|+.|++++|.+.+.+|..|+.+++|++||++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 23568889999999998999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCcccccccccceE-EEEeccccccc
Q 037331 291 MNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 291 ~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~ 324 (330)
+|++++. .| ..+..++.| ++|+++|+++.
T Consensus 689 ~N~l~g~--ip---~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 689 SNKLDGR--IP---QAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SSCCEEC--CC---GGGGGCCCCSEEECCSSEEEE
T ss_pred CCcccCc--CC---hHHhCCCCCCEEECcCCcccc
Confidence 9999987 77 345777888 99999998863
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-33 Score=258.38 Aligned_cols=277 Identities=18% Similarity=0.187 Sum_probs=210.9
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCcc-CchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGH-LLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
+++++|++++|.+.+..|..|.++++|++|++++|.+... .+..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6789999999999887788889999999999998877633 356688888899999998888877778888888888888
Q ss_pred cccCcCCCCCCc--cccCCcccceeecccccccccCCCC-CCCCCCccEEEeeccccCCcCcccccC-------------
Q 037331 120 LQNNSFTGLIPN--SLFNLSRLETLRAQFNIIGGTIPSR-IGNLSKLVNLGIGFSNLQGQILTEIGN------------- 183 (330)
Q Consensus 120 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~------------- 183 (330)
+++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+....+..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 888887753333 3777888888888888877555554 667777777777777655433222211
Q ss_pred ---------------------C----------------------------------------------------------
Q 037331 184 ---------------------L---------------------------------------------------------- 184 (330)
Q Consensus 184 ---------------------~---------------------------------------------------------- 184 (330)
+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 1
Q ss_pred -----CCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 185 -----QNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 185 -----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCccc
Confidence 3455555555555545566677788899999998888844455555 7889999999999888777788888899
Q ss_pred CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 260 LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
|+.|++++|.+.+..+..|..+++|++|++++|++++. .+ ..+..++.| .+++++|+++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~---~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV--PD---GIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CT---TTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccC--CH---hHhccCCcccEEEccCCCcc
Confidence 99999999999877788888999999999999999887 33 234677888 8999999984
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=254.42 Aligned_cols=277 Identities=19% Similarity=0.185 Sum_probs=222.7
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.+++..+..|.++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 67999999999999888888999999999999999998777888999999999999999998666667889999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999888888899999999999999998877777888889999999998888766555677777788888877776654
Q ss_pred CcccccCCCCC------------------------cEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhcc
Q 037331 201 IPPTIFNISTI------------------------RVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITN 256 (330)
Q Consensus 201 ~~~~l~~l~~L------------------------~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 256 (330)
.+..+..+++| +.|++++|.++ .++...+..+++|+.|+|++|.+.+..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 44444445544 45555555555 555444446788888888888887666667778
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 257 ASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 257 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
+++|+.|++++|.+.+..+..|..+++|++|++++|.++++ .+ ..+..++.| .+++++|+++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~---~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL--EE---SVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC--CG---GGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee--CH---hHcCCCcccCEEEccCCCcc
Confidence 88888888888888877777888888888888888888877 44 234667788 8889998884
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=251.34 Aligned_cols=257 Identities=20% Similarity=0.209 Sum_probs=193.5
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
.++|+.|++++|.+.+..|..|.++++|++|++++|.+.......|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 47788888888888777777788888888888888877755555677788888888888877766666777777777777
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCC------------------------
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG------------------------ 175 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~------------------------ 175 (330)
+++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++.+|.+..
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 77777776666667777777777777766653333334455555555555544433
Q ss_pred cCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhc
Q 037331 176 QILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSIT 255 (330)
Q Consensus 176 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 255 (330)
..+.......+|++|++++|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|+|++|.+.+..+..+.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhc
Confidence 33333333346677777777777444457788999999999999998 55554444899999999999999988888999
Q ss_pred cCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 256 NASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 256 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.+++|+.|++++|.+.+..+..|..+++|+.|++++|++.-.
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999976667789999999999999998865
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.7e-32 Score=239.45 Aligned_cols=274 Identities=21% Similarity=0.275 Sum_probs=217.0
Q ss_pred hHHHHHHhhc-CCccchhcCCC----cCCCCceeeeeeeeC--------CCCceEEEEEccCCccccccCCcccCCCccc
Q 037331 2 SALLAFKAHV-LDYRSALANNW----SIFYPICSCVGISCG--------SRHQRVTALNLLDMGLRGTIPGHLGNLSFLV 68 (330)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~ 68 (330)
.|++++|+.+ .|+.+|++. | +...++|.|.|+.|. ....+++.|+++++.+. .+|..+.++++|+
T Consensus 30 ~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~ 107 (328)
T 4fcg_A 30 DVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQ 107 (328)
T ss_dssp HHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCS
T ss_pred HHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCC
Confidence 5899999999 588888885 9 677889999999885 23367888888888887 6677777788888
Q ss_pred EEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeeccccc
Q 037331 69 SLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNI 148 (330)
Q Consensus 69 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 148 (330)
+|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|++++|...+..|..+...
T Consensus 108 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------------ 173 (328)
T 4fcg_A 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------------ 173 (328)
T ss_dssp EEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------------
T ss_pred EEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------------
Confidence 8888888877 66777788888888888888877 667777778888888888776665666544320
Q ss_pred ccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcc
Q 037331 149 IGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPST 228 (330)
Q Consensus 149 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 228 (330)
..+..+..+++|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..
T Consensus 174 ---~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 174 ---DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp ---C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred ---cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 11233455778888888888777 56667788888888888888887 46667888889999999998888778777
Q ss_pred hhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 229 IGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 229 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++++.+++..+.+...
T Consensus 249 ~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 249 FG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred hc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 66 788999999999888888888888899999999999988888999999999999999988776655
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-31 Score=241.28 Aligned_cols=270 Identities=18% Similarity=0.185 Sum_probs=178.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.+++.++.+....+..|..+++|+.|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 66889999999887555555788999999999999888766778889999999999999998777788889999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccC----------------C
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGN----------------L 184 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------~ 184 (330)
++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+.. .
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 999988655556788999999999999988666777888899999999888876432221111 1
Q ss_pred C---------------------CCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccC
Q 037331 185 Q---------------------NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGA 243 (330)
Q Consensus 185 ~---------------------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 243 (330)
+ +|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+. .+++|++|++++
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~ 281 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISN 281 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCS
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCC
Confidence 1 233333333333311 2344455555555555555533333333 455555555555
Q ss_pred cccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 244 NNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 244 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
|++.+ ++..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++. . +..++.| .+++++|++
T Consensus 282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~--~------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--K------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--C------CCTTCCCSEEECCSSCE
T ss_pred CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee--C------chhhccCCEEEcCCCCc
Confidence 55542 3333344555555555555555 3444455555566666655555544 1 2344556 666666665
Q ss_pred c
Q 037331 323 N 323 (330)
Q Consensus 323 ~ 323 (330)
+
T Consensus 352 ~ 352 (390)
T 3o6n_A 352 D 352 (390)
T ss_dssp E
T ss_pred c
Confidence 4
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=6.6e-32 Score=235.54 Aligned_cols=254 Identities=27% Similarity=0.441 Sum_probs=228.8
Q ss_pred CcccEEEccCCccCc--cCchhhccCCCCcEEEecC-cccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccce
Q 037331 65 SFLVSLDISENNFHG--HLLKELGQLHRLRVVSFAY-NKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLET 141 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 141 (330)
.+++.|+++++.+.+ .++..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999987 7888999999999999995 8898889999999999999999999998888999999999999
Q ss_pred eecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCC-CCcEEEccCCccCCCCcccccCCCCCcEEEecCCc
Q 037331 142 LRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQ-NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQ 220 (330)
Q Consensus 142 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 220 (330)
|++++|.+.+..|..+..+++|+.|++++|.+....+..+..++ .|++|++++|.+++..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988899999999999999999998877888888888 999999999999988888888887 9999999999
Q ss_pred ccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCC
Q 037331 221 LSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSS 300 (330)
Q Consensus 221 ~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 300 (330)
+.+..+..+. .+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+.+|..|..+++|++|++++|++++. .
T Consensus 209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--i 284 (313)
T 1ogq_A 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--I 284 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE--C
T ss_pred ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc--C
Confidence 9866666655 799999999999999866665 77889999999999999988999999999999999999999976 5
Q ss_pred CcccccccccceE-EEEeccccccccCCC
Q 037331 301 VDRWSFLSSFTLL-YLYFQLNNCNICGKT 328 (330)
Q Consensus 301 ~~~~~~l~~l~~l-~l~l~~n~~~~~~~~ 328 (330)
|.. ..++.| .+++++|+. .|+.|
T Consensus 285 p~~----~~l~~L~~l~l~~N~~-lc~~p 308 (313)
T 1ogq_A 285 PQG----GNLQRFDVSAYANNKC-LCGSP 308 (313)
T ss_dssp CCS----TTGGGSCGGGTCSSSE-EESTT
T ss_pred CCC----ccccccChHHhcCCCC-ccCCC
Confidence 532 678888 999999996 45544
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.7e-31 Score=249.17 Aligned_cols=270 Identities=18% Similarity=0.188 Sum_probs=186.2
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.+++.++.+....+..|.++++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 55788888888887655556788899999999999888776778888899999999999888777777888999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccC----------------C
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGN----------------L 184 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------~ 184 (330)
++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+.. .
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 999888666666788899999999999888777777888888999998888776432221111 1
Q ss_pred ---------------------CCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccC
Q 037331 185 ---------------------QNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGA 243 (330)
Q Consensus 185 ---------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 243 (330)
++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~ 287 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISN 287 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTT
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCC
Confidence 123344444444432 23455566666666666666644444444 566666666666
Q ss_pred cccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 244 NNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 244 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++. . +..++.| .+++++|++
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~--~------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--K------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--C------CCTTCCCSEEECCSSCE
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc--C------hhhcCCCCEEEeeCCCC
Confidence 66653 3444455666666666666666 4555556666666666666666555 2 2445667 777777776
Q ss_pred c
Q 037331 323 N 323 (330)
Q Consensus 323 ~ 323 (330)
+
T Consensus 358 ~ 358 (597)
T 3oja_B 358 D 358 (597)
T ss_dssp E
T ss_pred C
Confidence 4
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.8e-30 Score=246.48 Aligned_cols=275 Identities=20% Similarity=0.221 Sum_probs=157.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccC-ccccCCCCCcEEE
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS-SWIGVLSKLQILR 119 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 119 (330)
++++.|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.++ ..+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 34444444444443 333444444444444444444443333444444445555554444442222 2244555555555
Q ss_pred cccCcCCCCC--CccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcc-cccCCCCCcEEEccCCc
Q 037331 120 LQNNSFTGLI--PNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILT-EIGNLQNLEYLVLGENN 196 (330)
Q Consensus 120 l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 196 (330)
+++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+. .+..+++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 5555554332 44455555566666665555544455555666666666666555433332 25566666666666666
Q ss_pred cCCCCcccccCCCCCcEEEecCCccccc-CC--cchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC
Q 037331 197 LSGFIPPTIFNISTIRVLNLLGNQLSGH-LP--STIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH 273 (330)
Q Consensus 197 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~--~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (330)
+....+..+..+++|++|++++|.+.+. ++ ..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ-TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG-GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc-cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 6655555666666777777777766531 11 2233 566777777777777666666667777777777777777766
Q ss_pred CCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 274 IPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 274 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
.|..+..++.| +|++++|++++. .+. .+..++.| .+++++|+++
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~--~~~---~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISII--LPS---LLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCC--CGG---GHHHHHTSSEEECTTCCEE
T ss_pred ChhHhCccccc-EEECcCCccccc--CHh---hcccCCCCCEEeCCCCCcc
Confidence 66677777777 777777777765 442 23556777 7888888874
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.2e-30 Score=243.25 Aligned_cols=279 Identities=22% Similarity=0.212 Sum_probs=242.2
Q ss_pred eEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcc
Q 037331 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQ 121 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 121 (330)
.++.|+++++.+.+..+..|..+++|+.|++++|.+. .++..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999888888999999999999999988 667778999999999999999997778889999999999999
Q ss_pred cCcCCCCCC-ccccCCcccceeecccccccccC--CCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 122 NNSFTGLIP-NSLFNLSRLETLRAQFNIIGGTI--PSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 122 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
+|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 998875444 45889999999999999987554 778899999999999999988777778899999999999999998
Q ss_pred CCCcc-cccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccc---cchhhccCCCCcEEEccCCcccCCC
Q 037331 199 GFIPP-TIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGT---IPNSITNASNLIGLDFTSNSFSGHI 274 (330)
Q Consensus 199 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~ 274 (330)
+..+. .+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 65544 478899999999999999855555555 799999999999999763 2356888999999999999999888
Q ss_pred CccccCCCCccEEEcccCccCCCCCCCcccccccccceEEEEeccccccccCC
Q 037331 275 PNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLLYLYFQLNNCNICGK 327 (330)
Q Consensus 275 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l~l~l~~n~~~~~~~ 327 (330)
|..|..+++|++|++++|++++. .+..+. .++.|.+++++|+++.++.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~--~~~~l~---~l~~L~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSS--SIEALS---HLKGIYLNLASNHISIILP 540 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGG--GGGGGT---TCCSCEEECCSSCCCCCCG
T ss_pred hhhhccccCCCEEECCCCccCcC--ChhHhC---cccccEEECcCCcccccCH
Confidence 88999999999999999999988 665554 4444589999999987653
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.8e-30 Score=242.93 Aligned_cols=109 Identities=21% Similarity=0.200 Sum_probs=52.2
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 33444444444444333344444444444444444444333444444444444444444444333344445555555555
Q ss_pred ccCcCCC-CCCccccCCcccceeecccccc
Q 037331 121 QNNSFTG-LIPNSLFNLSRLETLRAQFNII 149 (330)
Q Consensus 121 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l 149 (330)
++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 5555443 2355566666666666665544
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=222.52 Aligned_cols=269 Identities=17% Similarity=0.192 Sum_probs=147.4
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+.++.|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+. .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 45666666666665554445666666666666666665554555666666666666666655 3333322 56666666
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccc--cCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGG--TIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.. ++..+ .++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCC
Confidence 6666655544555666666666666665532 334455556666666666665542 22222 255666666666665
Q ss_pred CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccc
Q 037331 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (330)
+..+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..|
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 54455555666666666666666532222333 4566666666666665 455555566666666666666654333344
Q ss_pred cC------CCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccc
Q 037331 279 GN------LRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLN 320 (330)
Q Consensus 279 ~~------l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n 320 (330)
.. .+.++.+++++|++......+. .+..+..+ .+++++|
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~---~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPS---TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGG---GGTTCCCGGGEEC---
T ss_pred CCcccccccccccceEeecCcccccccCcc---ccccccceeEEEeccc
Confidence 32 2456666666666554322332 23444555 5555555
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.4e-30 Score=246.35 Aligned_cols=277 Identities=19% Similarity=0.286 Sum_probs=185.7
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCc-cCc-cCchhhccC------CCCcEEEecCcccccccCc--cc
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENN-FHG-HLLKELGQL------HRLRVVSFAYNKLSGSFSS--WI 109 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l 109 (330)
.+++++|++++|.+.+.+|..|.++++|++|++++|. +++ .++..+..+ ++|++|++++|.+. .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 4779999999999988899889999999999999997 776 566666665 88888888888888 7777 78
Q ss_pred cCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCC-ccEEEeeccccCCcCcccccCCC--C
Q 037331 110 GVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSK-LVNLGIGFSNLQGQILTEIGNLQ--N 186 (330)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~ 186 (330)
..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .++..+.... +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 888888888888888776666 6667777777777777666 55666666666 666666666555 3333333222 4
Q ss_pred CcEEEccCCccCCCCccccc-------------------------------CCCCCcEEEecCCcccccCCcchhcCCC-
Q 037331 187 LEYLVLGENNLSGFIPPTIF-------------------------------NISTIRVLNLLGNQLSGHLPSTIGHSLP- 234 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~-------------------------------~l~~L~~L~l~~~~~~~~~~~~l~~~~~- 234 (330)
|+.|++++|.+.+..|..+. .+++|++|++++|.++ .+|...+....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 44444444444433333332 3555666666666555 55544432222
Q ss_pred ------CccEEEccCcccccccchhhc--cCCCCcEEEccCCcccCCCCccccCCCCccEEEcc------cCccCCCCCC
Q 037331 235 ------NIKYLTLGANNLFGTIPNSIT--NASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLM------MNNLTTESSS 300 (330)
Q Consensus 235 ------~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~------~n~l~~~~~~ 300 (330)
+|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|++|+++ +|.+.+. .
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~--~ 558 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE--W 558 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC--C
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc--C
Confidence 6666666666666 4555554 66777777777777764 66666677777777773 4555544 4
Q ss_pred CcccccccccceE-EEEeccccccccCCC
Q 037331 301 VDRWSFLSSFTLL-YLYFQLNNCNICGKT 328 (330)
Q Consensus 301 ~~~~~~l~~l~~l-~l~l~~n~~~~~~~~ 328 (330)
|. .+..++.| .+++++|+++.++..
T Consensus 559 p~---~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 559 PE---GITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp CT---TGGGCSSCCEEECCSSCCCBCCSC
T ss_pred hH---HHhcCCCCCEEECCCCcCCccCHh
Confidence 42 34567788 889999998877653
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.4e-30 Score=242.71 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=187.1
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+++..|..|.++++|++|++++|.+....+.+|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 67999999999998877888999999999999999988777788899999999999999998776677889999999999
Q ss_pred ccCcCCC-CCCccccCCcccceeecccccccccCC-CCCCCCCCccEEEeeccccCCcCcccccC---------------
Q 037331 121 QNNSFTG-LIPNSLFNLSRLETLRAQFNIIGGTIP-SRIGNLSKLVNLGIGFSNLQGQILTEIGN--------------- 183 (330)
Q Consensus 121 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------------- 183 (330)
++|.+.+ ..+..+..+++|++|++++|...+.++ ..+..+++|+.|++++|.+....+..+..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9998875 345678888899999998887443444 56788888888888888776555444443
Q ss_pred ---------CCCCcEEEccCCccCCCC--cccc-----------------------------cC----------------
Q 037331 184 ---------LQNLEYLVLGENNLSGFI--PPTI-----------------------------FN---------------- 207 (330)
Q Consensus 184 ---------~~~L~~L~l~~~~~~~~~--~~~l-----------------------------~~---------------- 207 (330)
+++|++|++++|.+++.. +..+ ..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 556667777666655310 0000 00
Q ss_pred -------------------------------------------CCCCcEEEecCCcccccCCcchhcCCCCccEEEccCc
Q 037331 208 -------------------------------------------ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGAN 244 (330)
Q Consensus 208 -------------------------------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n 244 (330)
.++|+.|++++|.+. .+|..++..+++|+.|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 122333444444433 344444334667777777777
Q ss_pred ccccccch---hhccCCCCcEEEccCCcccCCCC--ccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEec
Q 037331 245 NLFGTIPN---SITNASNLIGLDFTSNSFSGHIP--NTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQ 318 (330)
Q Consensus 245 ~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~ 318 (330)
.+.+..+. .++.+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++++|.. +..++.| +++++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------~~~~~~L~~L~Ls 418 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS------CQWPEKMRFLNLS 418 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC------CCCCTTCCEEECT
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh------hcccccccEEECC
Confidence 77654432 24556677777777776653211 3456667777777777776654322 1333445 55555
Q ss_pred ccccccc
Q 037331 319 LNNCNIC 325 (330)
Q Consensus 319 ~n~~~~~ 325 (330)
+|+++.+
T Consensus 419 ~N~l~~l 425 (549)
T 2z81_A 419 STGIRVV 425 (549)
T ss_dssp TSCCSCC
T ss_pred CCCcccc
Confidence 5555433
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=249.16 Aligned_cols=282 Identities=18% Similarity=0.138 Sum_probs=213.0
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccC-chhhccCCCCcEEEecCcccccccCccccCCCCCcE
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHL-LKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQI 117 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 117 (330)
..+++++|+|++|.+++..+..|.++++|+.|++++|.....+ +.+|.++++|++|++++|.+.+..|..+..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3478999999999998888889999999999999998554343 678899999999999999999888899999999999
Q ss_pred EEcccCcCCCCCCcc--ccCCcccceeecccccccccCC-CCCCCCCCccEEEeeccccCCcCcccccCC--CC------
Q 037331 118 LRLQNNSFTGLIPNS--LFNLSRLETLRAQFNIIGGTIP-SRIGNLSKLVNLGIGFSNLQGQILTEIGNL--QN------ 186 (330)
Q Consensus 118 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~------ 186 (330)
|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+ ++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988655544 8899999999999998875544 468889999999999887765444333322 33
Q ss_pred ------------------------CcEEEccCCccCCCCccccc------------------------------------
Q 037331 187 ------------------------LEYLVLGENNLSGFIPPTIF------------------------------------ 206 (330)
Q Consensus 187 ------------------------L~~L~l~~~~~~~~~~~~l~------------------------------------ 206 (330)
|+.|++++|.+.+..+..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 56666666644332222111
Q ss_pred C--CCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCc
Q 037331 207 N--ISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHL 284 (330)
Q Consensus 207 ~--l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 284 (330)
. .++|+.|++++|.+.+..+..+. .+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred ccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 24677777777777633333333 67888888888888877777777888888888888888876667778888888
Q ss_pred cEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccC
Q 037331 285 SVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 285 ~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
++|++++|.+... .+. .+..+++| .+++++|.++.++
T Consensus 341 ~~L~L~~N~i~~~--~~~---~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 341 AYIDLQKNHIAII--QDQ---TFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CEEECCSCCCCCC--CSS---CSCSCCCCCEEEEETCCSCCCS
T ss_pred CEEECCCCCCCcc--Chh---hhcCCCCCCEEECCCCCCCccc
Confidence 8888888888776 332 24667788 8888888887665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.2e-29 Score=229.75 Aligned_cols=256 Identities=21% Similarity=0.269 Sum_probs=179.5
Q ss_pred ceEEEEEccCCcccccc-CCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCc--cccCCCCCcE
Q 037331 41 QRVTALNLLDMGLRGTI-PGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSS--WIGVLSKLQI 117 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~ 117 (330)
++++.|++++|.+.+.+ +..|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+. .+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 55666666666554333 34456666666666666665555555556666666666666655542222 2555566666
Q ss_pred EEcccCcCCCCCCcc-ccCCcccceeecccccccccCCCCCCC-------------------------------------
Q 037331 118 LRLQNNSFTGLIPNS-LFNLSRLETLRAQFNIIGGTIPSRIGN------------------------------------- 159 (330)
Q Consensus 118 L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~------------------------------------- 159 (330)
|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 666666555444443 455555555555555554333322211
Q ss_pred ------------------------------------------------------------CCCccEEEeeccccCCcCcc
Q 037331 160 ------------------------------------------------------------LSKLVNLGIGFSNLQGQILT 179 (330)
Q Consensus 160 ------------------------------------------------------------~~~L~~L~l~~~~~~~~~~~ 179 (330)
.++|+.+++++|.+....+.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 13455555555555555566
Q ss_pred cccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 180 EIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcccccChhhcccccc
Confidence 688899999999999999977788899999999999999999844444444 7999999999999999888888999999
Q ss_pred CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 260 LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
|+.|++++|.+.+..+..|..+++|++|++++|+++..
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999976666789999999999999999987
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-28 Score=217.09 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=226.9
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.+++.++.++ .+|..+. ++++.|++++|.+.......|..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 46778888888876 4555443 68999999999998776778999999999999999999777899999999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCC--cCcccccCCCCCcEEEccCCccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG--QILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.+++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999988 4454443 789999999999986666668899999999999998753 45567888999999999999998
Q ss_pred CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccc
Q 037331 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (330)
.+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 4555443 7999999999999855555555 7999999999999999777778899999999999999998 788889
Q ss_pred cCCCCccEEEcccCccCCCCCCCccccc---ccccceE-EEEeccccccc
Q 037331 279 GNLRHLSVLSLMMNNLTTESSSVDRWSF---LSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 279 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~---l~~l~~l-~l~l~~n~~~~ 324 (330)
..+++|++|++++|++++++ +..+.. ......+ .+++++|++..
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~--~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIG--SNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCC--TTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCcCEEECCCCcCCccC--hhhcCCcccccccccccceEeecCcccc
Confidence 99999999999999999983 333432 2345778 99999999864
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-29 Score=219.93 Aligned_cols=269 Identities=20% Similarity=0.208 Sum_probs=180.1
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+. .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 46777888777777666667777778888888777777666677777777888888777777 4444332 67778888
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccc--cCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGG--TIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.+++++|.+.. ++..+ .++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS--CSSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc--cCCCCEEECCCCcCC
Confidence 8777776555667777778888877777642 445555555 77777777777654 33322 257777778777777
Q ss_pred CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccc
Q 037331 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (330)
...+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..|
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 66556677777788888888777733333443 6777888888887776 566667777788888888887775544555
Q ss_pred cC------CCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccc
Q 037331 279 GN------LRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNN 321 (330)
Q Consensus 279 ~~------l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~ 321 (330)
.. .+.|+.+++++|++......+ ..+..++.| .+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCc---ccccccchhhhhhccccc
Confidence 43 356777888877776332234 233556666 66776663
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=231.31 Aligned_cols=155 Identities=22% Similarity=0.287 Sum_probs=83.3
Q ss_pred CCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCC--CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccE
Q 037331 161 SKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG--FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 238 (330)
++|+.|++++|.+....+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.+.+|...+..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 344444444444443333344444444555554444442 222334445555555555555543244433334455555
Q ss_pred EEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEe
Q 037331 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYF 317 (330)
Q Consensus 239 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l 317 (330)
|++++|.+.+..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|++++++.. .+..++.| .+++
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~-----~~~~l~~L~~L~l 475 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG-----IFDRLTSLQKIWL 475 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEEC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH-----HhccCCcccEEEC
Confidence 55555555444443332 56677777777666 5666556777777777777777765222 24566777 7777
Q ss_pred cccccc
Q 037331 318 QLNNCN 323 (330)
Q Consensus 318 ~~n~~~ 323 (330)
++|+++
T Consensus 476 ~~N~~~ 481 (520)
T 2z7x_B 476 HTNPWD 481 (520)
T ss_dssp CSSCBC
T ss_pred cCCCCc
Confidence 777774
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=233.15 Aligned_cols=106 Identities=25% Similarity=0.191 Sum_probs=66.6
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+.+..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 56666777776666555556666667777777766666555566666666666776666666 33333 5666666666
Q ss_pred ccCcCCC-CCCccccCCcccceeecccccc
Q 037331 121 QNNSFTG-LIPNSLFNLSRLETLRAQFNII 149 (330)
Q Consensus 121 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l 149 (330)
++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccccchhhhccCCcceEEEecCccc
Confidence 6666654 3455666666666666665554
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=224.35 Aligned_cols=274 Identities=22% Similarity=0.258 Sum_probs=185.8
Q ss_pred CcCCCCceeeeeeeeCC-----------CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCC
Q 037331 22 WSIFYPICSCVGISCGS-----------RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHR 90 (330)
Q Consensus 22 ~~~~~~~~~~~~~~~~~-----------~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 90 (330)
|.....+|.|.++ |+. ..+++++|+++++.+++..+..|.++++|++|++++|.+....+..|..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 6667778888765 431 1246788888888877665556778888888888888777666667777888
Q ss_pred CcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCC-ccccCCcccceeeccccc-ccccCCCCCCCCCCccEEEe
Q 037331 91 LRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIP-NSLFNLSRLETLRAQFNI-IGGTIPSRIGNLSKLVNLGI 168 (330)
Q Consensus 91 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l 168 (330)
|++|++++|.++...+..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +....+..+..+++|+.|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 8888888887775444457777888888888887774433 367777888888887773 54444566777778888888
Q ss_pred eccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchh--cCCCCccEEEccCccc
Q 037331 169 GFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIG--HSLPNIKYLTLGANNL 246 (330)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~~L~~L~L~~n~~ 246 (330)
++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+. ...+.++.++++++.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 88777766666777777888888888777532222333477788888888877633222211 1345677777777766
Q ss_pred cc----ccchhhccCCCCcEEEccCCcccCCCCcc-ccCCCCccEEEcccCccCCC
Q 037331 247 FG----TIPNSITNASNLIGLDFTSNSFSGHIPNT-FGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 247 ~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~ 297 (330)
.+ .+|..+..+++|+.|++++|.+. .+|.. |+.+++|++|++++|+++..
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 54 25566677788888888888877 44443 57788888888888877765
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-28 Score=233.77 Aligned_cols=131 Identities=21% Similarity=0.159 Sum_probs=106.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
..+++|+|++|.+++..+.+|.++++|++|++++|.+....+.+|.++++|++|+|++|+++...+..|.++.+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57999999999999777788999999999999999998777778999999999999999998666677888999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccc-cCCCCCCCCCCccEEEeecc
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGG-TIPSRIGNLSKLVNLGIGFS 171 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~ 171 (330)
++|.+++..+..|..+++|++|++++|.+.. ..|..+..+++|+.|++++|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 9998886666678888888888888877653 23444555556665555444
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=242.15 Aligned_cols=275 Identities=19% Similarity=0.145 Sum_probs=182.0
Q ss_pred ceEEEEEccCCcccccc-CCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCcc--ccCCCCCcE
Q 037331 41 QRVTALNLLDMGLRGTI-PGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSW--IGVLSKLQI 117 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~ 117 (330)
.+|+.|++++|...+.+ |..|.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+.. +..+++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45555555555433333 444555555555555555555444555555555555555555554333322 445555555
Q ss_pred EEcccCcCCCCCC-ccccCCcccceeecccc--------------------------cccccCCCCCCCCCC------cc
Q 037331 118 LRLQNNSFTGLIP-NSLFNLSRLETLRAQFN--------------------------IIGGTIPSRIGNLSK------LV 164 (330)
Q Consensus 118 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~--------------------------~l~~~~~~~~~~~~~------L~ 164 (330)
|++++|.+.+..+ ..|..+++|++|++++| .+.+..+..+..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 5555555543322 34455555555555554 444334444444443 88
Q ss_pred EEEeeccccCCcCcccc------------------------------------cC--CCCCcEEEccCCccCCCCccccc
Q 037331 165 NLGIGFSNLQGQILTEI------------------------------------GN--LQNLEYLVLGENNLSGFIPPTIF 206 (330)
Q Consensus 165 ~L~l~~~~~~~~~~~~l------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~l~ 206 (330)
.|++++|.+....+..+ .. .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 88888875443222111 11 26899999999999877788888
Q ss_pred CCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccE
Q 037331 207 NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSV 286 (330)
Q Consensus 207 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 286 (330)
.+++|+.|++++|.+.+..+..+. .+++|++|+|++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 999999999999999855555554 8999999999999998888888999999999999999998766778999999999
Q ss_pred EEcccCccCCCCCCCcccccccccceE-EEEeccccccccC
Q 037331 287 LSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 287 l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
|++++|.+++++. ++.| .+++++|+++.++
T Consensus 367 L~Ls~N~l~~i~~----------~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 367 LDLRDNALTTIHF----------IPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEEETCCSCCCSS----------CCSCSEEEEESCCCCCCC
T ss_pred EECCCCCCCcccC----------CCCcchhccCCCCccccc
Confidence 9999999987622 4455 6666666665544
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-28 Score=231.55 Aligned_cols=108 Identities=22% Similarity=0.194 Sum_probs=92.8
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+.+..+..|.++++|++|++++|.+....+.+|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67999999999998777788999999999999999998777888999999999999999988 55554 7899999999
Q ss_pred ccCcCCCC-CCccccCCcccceeecccccccc
Q 037331 121 QNNSFTGL-IPNSLFNLSRLETLRAQFNIIGG 151 (330)
Q Consensus 121 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~ 151 (330)
++|.+.+. .|..+..+++|++|++++|.+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99998853 35788889999999998887653
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.3e-28 Score=236.63 Aligned_cols=250 Identities=25% Similarity=0.229 Sum_probs=185.6
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999998877778999999999999999998888888999999999999999999666667999999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCccccc--CCCCCcEEEccCCccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIG--NLQNLEYLVLGENNLS 198 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~ 198 (330)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999877778899999999999999999877788888999999999999887755544433 4578888888888777
Q ss_pred CCCcccccCC---------------------------CCCcEEEecCCcccccCCcchhcCCC--CccEEEccCcccccc
Q 037331 199 GFIPPTIFNI---------------------------STIRVLNLLGNQLSGHLPSTIGHSLP--NIKYLTLGANNLFGT 249 (330)
Q Consensus 199 ~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~--~L~~L~L~~n~~~~~ 249 (330)
+..+..+..+ ++|+.|++++|.+.+..+..+. .++ +|+.|++++|.+.+.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 5555444332 3455555555555533333333 332 366666666666655
Q ss_pred cchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEccc
Q 037331 250 IPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMM 291 (330)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 291 (330)
.+..++.+++|+.|++++|.+.+..+..|..+++|+++++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 555566666666666666665554444444444444444443
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.5e-29 Score=232.83 Aligned_cols=109 Identities=24% Similarity=0.265 Sum_probs=75.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 56666777766666555556666777777777776666555566667777777777777666444445677778888888
Q ss_pred ccCcCCC-CCCccccCCcccceeecccccc
Q 037331 121 QNNSFTG-LIPNSLFNLSRLETLRAQFNII 149 (330)
Q Consensus 121 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l 149 (330)
++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 8777765 3577777888888888776654
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=216.67 Aligned_cols=269 Identities=23% Similarity=0.281 Sum_probs=224.5
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.++++++.++ .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46788999999887 556655 378999999999998777778999999999999999999887889999999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCC--cCcccccCCCCCcEEEccCCccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG--QILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 4455443 799999999999985555568899999999999998753 445566666 9999999999998
Q ss_pred CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccc
Q 037331 199 GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTF 278 (330)
Q Consensus 199 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (330)
. +|..+. ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 4 555543 6899999999999844444555 7899999999999999877778899999999999999998 788889
Q ss_pred cCCCCccEEEcccCccCCCCCCCcccccc---cccceE-EEEecccccc
Q 037331 279 GNLRHLSVLSLMMNNLTTESSSVDRWSFL---SSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 279 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~l---~~l~~l-~l~l~~n~~~ 323 (330)
..+++|++|++++|++++. .+..+... .....+ .+++++|++.
T Consensus 261 ~~l~~L~~L~l~~N~l~~~--~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSCCCBC--CTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hcCccCCEEECCCCCCCcc--ChhHccccccccccccccceEeecCccc
Confidence 9999999999999999988 44334322 235678 9999999987
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3e-28 Score=229.15 Aligned_cols=274 Identities=22% Similarity=0.250 Sum_probs=178.6
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccc-cCccccCCCCCcE
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGS-FSSWIGVLSKLQI 117 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 117 (330)
..+++++|++++|.+++..|..|.++++|++|++++|.+. .++.. .+++|++|++++|.+.+. .|..+..+++|++
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 3478999999999988877888888999999999888887 33333 678888888888887753 3467777888888
Q ss_pred EEcccCcCCCC-------------------------CCccccCCc-----------------------------------
Q 037331 118 LRLQNNSFTGL-------------------------IPNSLFNLS----------------------------------- 137 (330)
Q Consensus 118 L~l~~~~~~~~-------------------------~~~~l~~l~----------------------------------- 137 (330)
|++++|.+... .|..+..+.
T Consensus 151 L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred EecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 88877766531 111111111
Q ss_pred ----------------------------------------------ccceeecccccccccCCCCC--------------
Q 037331 138 ----------------------------------------------RLETLRAQFNIIGGTIPSRI-------------- 157 (330)
Q Consensus 138 ----------------------------------------------~L~~L~l~~~~l~~~~~~~~-------------- 157 (330)
+|++|++++|.+.+.+|..+
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 34444455554444444433
Q ss_pred ---------------------------------------CCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 158 ---------------------------------------GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 158 ---------------------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
..+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 34455666666666665555555666666666666666665
Q ss_pred CC--CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCc
Q 037331 199 GF--IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN 276 (330)
Q Consensus 199 ~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 276 (330)
+. .|..+..+++|+.|++++|.+.+.+|...+..+++|+.|++++|.+.+..+..+. ++|+.|++++|.+. .+|.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence 32 2344556666777777777666446655444566777777777776654444332 57788888888777 5666
Q ss_pred cccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 277 TFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 277 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
.+..+++|++|++++|+++++|.. .+..++.| .+++++|+++
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~-----~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDG-----VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTT-----STTTCTTCCCEECCSCCBC
T ss_pred hhcCCCCCCEEECCCCCCCCCCHH-----HHhcCCCCCEEEecCCCcC
Confidence 566788888888888888766322 24566777 8888888874
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-28 Score=239.43 Aligned_cols=274 Identities=20% Similarity=0.273 Sum_probs=183.6
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCc-cCc-cCchhhccCC-------CCcEEEecCcccccccCc--c
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENN-FHG-HLLKELGQLH-------RLRVVSFAYNKLSGSFSS--W 108 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~ 108 (330)
.++|+.|++++|.+.+.+|..|.++++|+.|++++|. +.. .++..+..++ +|+.|++++|.+. .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 4779999999999888889889999999999999987 765 5565555444 8888888888888 6777 7
Q ss_pred ccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCC-ccEEEeeccccCCcCcccccCC---
Q 037331 109 IGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSK-LVNLGIGFSNLQGQILTEIGNL--- 184 (330)
Q Consensus 109 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~--- 184 (330)
+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .++..+..+
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 888888888888888877 556 7777788888888887777 66766777777 777777777655 333333222
Q ss_pred ----------------------------CCCcEEEccCCccCCCCcccc-cCCCCCcEEEecCCcccccCCcchhcCC--
Q 037331 185 ----------------------------QNLEYLVLGENNLSGFIPPTI-FNISTIRVLNLLGNQLSGHLPSTIGHSL-- 233 (330)
Q Consensus 185 ----------------------------~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~~~-- 233 (330)
++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+. .+|...+...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 24445555555544 233332 24566666666666665 5555544222
Q ss_pred -----CCccEEEccCcccccccchhhc--cCCCCcEEEccCCcccCCCCccccCCCCccEEEccc------CccCCCCCC
Q 037331 234 -----PNIKYLTLGANNLFGTIPNSIT--NASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMM------NNLTTESSS 300 (330)
Q Consensus 234 -----~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~------n~l~~~~~~ 300 (330)
++|+.|+|++|++. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+. .
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~--i 798 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--W 798 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC--C
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc--C
Confidence 26666666666666 4555554 66667777777776664 565666666666666654 444444 4
Q ss_pred CcccccccccceE-EEEeccccccccCC
Q 037331 301 VDRWSFLSSFTLL-YLYFQLNNCNICGK 327 (330)
Q Consensus 301 ~~~~~~l~~l~~l-~l~l~~n~~~~~~~ 327 (330)
|. .+..++.| .|+|++|+++.++.
T Consensus 799 p~---~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 799 PT---GITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp CT---TGGGCSSCCEEECCSSCCCBCCS
T ss_pred hH---HHhcCCCCCEEECCCCCCCccCH
Confidence 42 23456667 77777777766654
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.4e-28 Score=232.38 Aligned_cols=254 Identities=22% Similarity=0.254 Sum_probs=115.4
Q ss_pred EEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhc---------------------------------cCC
Q 037331 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELG---------------------------------QLH 89 (330)
Q Consensus 43 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------------------------~l~ 89 (330)
++.|++++|.+.+..+..|..+++|+.|++++|.+....+..|. .++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 66666666666555555566666666666666555443333333 344
Q ss_pred CCcEEEecCcccccccCccccCCCCCcEEEcccCc----------------------------CCCCCCccccCCcccce
Q 037331 90 RLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNS----------------------------FTGLIPNSLFNLSRLET 141 (330)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------------------------~~~~~~~~l~~l~~L~~ 141 (330)
+|++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 44444444444444444444444444444443332 22222333334444444
Q ss_pred eecccccccccCC-CCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC--CCCcccccCCCCCcEEEecC
Q 037331 142 LRAQFNIIGGTIP-SRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS--GFIPPTIFNISTIRVLNLLG 218 (330)
Q Consensus 142 L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~ 218 (330)
|++++|.+.+.++ ..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 4444444432222 23334444444444444332222222333333333333333332 12344444555555555555
Q ss_pred CcccccCCcchhcCCCCccEEEccCcccccccc--------hhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcc
Q 037331 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP--------NSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLM 290 (330)
Q Consensus 219 ~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 290 (330)
|.++ .++...+..+++|+.|++++|.+.+... ..+..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 490 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 5555 3333322245555555555555543211 113444555555555555552222345555555555555
Q ss_pred cCccCCC
Q 037331 291 MNNLTTE 297 (330)
Q Consensus 291 ~n~l~~~ 297 (330)
+|.++++
T Consensus 569 ~N~l~~l 575 (680)
T 1ziw_A 569 LNNLNTL 575 (680)
T ss_dssp SSCCCCC
T ss_pred CCCCCcC
Confidence 5555544
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.5e-28 Score=230.46 Aligned_cols=286 Identities=17% Similarity=0.215 Sum_probs=204.2
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCccccc-ccCccccCCCCCcE
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSG-SFSSWIGVLSKLQI 117 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 117 (330)
..+++++|++++|.+.+..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+.+ ..+..+..+++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 44889999999999998888889999999999999999987777779999999999999999885 34667889999999
Q ss_pred EEcccCcC-CCCCCccccCCcccceeecccccccccCCCCCCC------------------------CCCccEEEeeccc
Q 037331 118 LRLQNNSF-TGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGN------------------------LSKLVNLGIGFSN 172 (330)
Q Consensus 118 L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~------------------------~~~L~~L~l~~~~ 172 (330)
|++++|.. ....+..+..+++|++|++++|.+.+..+..+.. +++|+.+++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 99999984 4344467889999999999999988766766654 4556666666655
Q ss_pred cCCcC--c-ccc----------------------------------------------------------cC--------
Q 037331 173 LQGQI--L-TEI----------------------------------------------------------GN-------- 183 (330)
Q Consensus 173 ~~~~~--~-~~l----------------------------------------------------------~~-------- 183 (330)
+.... + ... ..
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 44310 0 000 00
Q ss_pred ---------------------CCCCcEEEccCCccCCCCcccc-cCCCCCcEEEecCCcccccCCcc--hhcCCCCccEE
Q 037331 184 ---------------------LQNLEYLVLGENNLSGFIPPTI-FNISTIRVLNLLGNQLSGHLPST--IGHSLPNIKYL 239 (330)
Q Consensus 184 ---------------------~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~~L~~L 239 (330)
.++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.++.. ....+++|+.|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 124555555555554 345444 46888889999988887555432 12257888888
Q ss_pred EccCcccccccc--hhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCC-ccccc----------
Q 037331 240 TLGANNLFGTIP--NSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSV-DRWSF---------- 306 (330)
Q Consensus 240 ~L~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~~~---------- 306 (330)
++++|++.+..+ ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++++... ..++.
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh
Confidence 888888875432 34677888888888888887 57777777788888888888777654321 11111
Q ss_pred -ccccceE-EEEeccccccccC
Q 037331 307 -LSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 307 -l~~l~~l-~l~l~~n~~~~~~ 326 (330)
...++.| .+++++|+++.++
T Consensus 446 ~~~~l~~L~~L~Ls~N~l~~ip 467 (549)
T 2z81_A 446 FSLFLPRLQELYISRNKLKTLP 467 (549)
T ss_dssp CCCCCTTCCEEECCSSCCSSCC
T ss_pred hcccCChhcEEECCCCccCcCC
Confidence 1145566 6666666666554
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.4e-28 Score=227.67 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=72.2
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCccccc-ccCccccCCCCCcE
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSG-SFSSWIGVLSKLQI 117 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 117 (330)
..+++++|++++|.+++..+..|.++++|++|++++|.+.......+..+++|++|++++|.+.+ .+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 34788899999988887777788889999999998888875555467888889999999888875 35778888888888
Q ss_pred EEcccCcCCCC
Q 037331 118 LRLQNNSFTGL 128 (330)
Q Consensus 118 L~l~~~~~~~~ 128 (330)
|++++|.+.+.
T Consensus 154 L~l~~n~l~~~ 164 (570)
T 2z63_A 154 LDLSSNKIQSI 164 (570)
T ss_dssp EECTTSCCCEE
T ss_pred EeCcCCcccee
Confidence 88888876543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-27 Score=215.31 Aligned_cols=291 Identities=16% Similarity=0.103 Sum_probs=207.5
Q ss_pred CCcCCCCcee-eeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCc
Q 037331 21 NWSIFYPICS-CVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYN 99 (330)
Q Consensus 21 ~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 99 (330)
+|..+.+||. +.++.|... .+.+............-..+++++.|++.++.+.......+..+++|++|++++|
T Consensus 5 ~~~~~~~C~~~~~~~~c~~~-----~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n 79 (390)
T 3o6n_A 5 PRQPEYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79 (390)
T ss_dssp --CCEECBCC------EEEE-----SCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS
T ss_pred CCCCccceehhhhhhcccee-----eeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCC
Confidence 4888888885 444445322 1222222211111111235789999999999988666666889999999999999
Q ss_pred ccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcc
Q 037331 100 KLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILT 179 (330)
Q Consensus 100 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 179 (330)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+.
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 99977777899999999999999999988888899999999999999999844344468899999999999999877777
Q ss_pred cccCCCCCcEEEccCCccCCCCcccccCC-------------------------------------CCCcEEEecCCccc
Q 037331 180 EIGNLQNLEYLVLGENNLSGFIPPTIFNI-------------------------------------STIRVLNLLGNQLS 222 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l-------------------------------------~~L~~L~l~~~~~~ 222 (330)
.+..+++|++|++++|.++......+..+ ++|+.|++++|.++
T Consensus 160 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 239 (390)
T ss_dssp TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC
T ss_pred hccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc
Confidence 78899999999999998874322211111 13444444444443
Q ss_pred ccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCc
Q 037331 223 GHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVD 302 (330)
Q Consensus 223 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~ 302 (330)
.. ..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++..+..+++|++|++++|++++.+.
T Consensus 240 -~~-~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~--- 312 (390)
T 3o6n_A 240 -DT-AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVER--- 312 (390)
T ss_dssp -CC-GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGG---
T ss_pred -cc-HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCc---
Confidence 22 2233 5677888888888877666777777888888888888777 355556677888888888888776521
Q ss_pred ccccccccceE-EEEeccccccccC
Q 037331 303 RWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 303 ~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
.+..++.| .+++++|+++.++
T Consensus 313 ---~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 313 ---NQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp ---GHHHHTTCSEEECCSSCCCCCC
T ss_pred ---cccccCcCCEEECCCCccceeC
Confidence 23566778 8888888887664
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.5e-28 Score=231.63 Aligned_cols=269 Identities=20% Similarity=0.234 Sum_probs=226.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++.++.+. .+| .+..+++|+.|++++|.+. .++ .+ .+++|+.|++++|...... .+..+++|++|++
T Consensus 285 ~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp TTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred CCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 67888888888875 344 6888889999999998884 555 45 8889999999988554333 5568899999999
Q ss_pred ccCcCCCC--CCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCc-ccccCCCCCcEEEccCCcc
Q 037331 121 QNNSFTGL--IPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQIL-TEIGNLQNLEYLVLGENNL 197 (330)
Q Consensus 121 ~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 197 (330)
++|.+.+. .+..+..+++|++|++++|.+. .++..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 99988754 3778889999999999999987 466888999999999999998876655 5788899999999999999
Q ss_pred CCCCcccccCCCCCcEEEecCCccccc-CCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCc
Q 037331 198 SGFIPPTIFNISTIRVLNLLGNQLSGH-LPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN 276 (330)
Q Consensus 198 ~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 276 (330)
.+..|..+..+++|++|++++|.+.+. +|..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|.
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhc-cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 888888899999999999999999864 555555 789999999999999988888899999999999999999987788
Q ss_pred cccCCCCccEEEcccCccCCCCCCCcccccccccc-eE-EEEeccccccc
Q 037331 277 TFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFT-LL-YLYFQLNNCNI 324 (330)
Q Consensus 277 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~-~l-~l~l~~n~~~~ 324 (330)
.|+.+++|++|++++|+++.+|.. +..++ .| .+++++|++..
T Consensus 516 ~~~~l~~L~~L~l~~N~l~~~p~~------~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIETSKGI------LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GTTTCTTCCEEECTTSCCCCEESC------GGGSCTTCCEEECCSCCCCC
T ss_pred HccCCCcCCEEECCCCcCcccCHh------HhhhcccCcEEEccCCCccc
Confidence 999999999999999999876322 35565 58 99999999953
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-27 Score=211.95 Aligned_cols=261 Identities=25% Similarity=0.337 Sum_probs=162.3
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
.+++++|++++|.+++.. . +..+++|++|++++|.+... ..+..+++|++|++++|.+.+. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 377889999998887543 3 88888899999988877642 4578888888888888887743 32 66777777777
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCc--------------------c
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQIL--------------------T 179 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~ 179 (330)
+++|..... ...+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+..... .
T Consensus 139 l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 139 LGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp CTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 777754422 2335666666666666665542211 4455555555555555432211 1
Q ss_pred cccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 180 EIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
.+..+++|++|++++|.++.. +. +..+++|++|++++|.++ .+ ..+. .+++|+.|++++|.+.+. ..+..+++
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~-~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQIS-DI-NAVK-DLTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CC-GGGT-TCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred hhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccC-CC-hhHh-cCCCcCEEEccCCccCCC--hhhcCCCC
Confidence 144555666666666665532 22 555666666666666665 33 2222 566677777777666532 23566677
Q ss_pred CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 260 LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
|+.|++++|.+.+..+..+..+++|++|++++|++++. .+ +..++.| .+++++|+|+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RP-----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC--GG-----GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc--cC-----hhhhhccceeehhhhccc
Confidence 77777777776655556666777777777777776665 22 3556666 7777777664
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.9e-27 Score=210.37 Aligned_cols=261 Identities=23% Similarity=0.328 Sum_probs=178.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++.++.+... + .+..+++|++|++++|.+... +. +..+++|++|++++|.+.. + ..+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 7899999999998743 3 488999999999999988753 33 8999999999999999884 3 35889999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+. +. +..+++|++|++++|..... ...+..+++|+.+++.++.+..... +..+++|++|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99998854 33 88999999999999966534 3448899999999999998764433 77889999999999988743
Q ss_pred CcccccCCCCCcEEEecCCcccc---------------------cCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSG---------------------HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~---------------------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
+. +..+++|+.+++++|.+.+ .++. +. .+++|++|++++|.+.+. ..+..+++
T Consensus 193 -~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~ 266 (347)
T 4fmz_A 193 -SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LA-NLSQLTWLEIGTNQISDI--NAVKDLTK 266 (347)
T ss_dssp -GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred -cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hh-cCCCCCEEECCCCccCCC--hhHhcCCC
Confidence 22 4445555555555554441 2222 22 344555555555544421 23444555
Q ss_pred CcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccccc
Q 037331 260 LIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 260 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
|+.|++++|.+.+ + ..+..+++|++|++++|++++. .+ ..+..++.| .+++++|+++.+
T Consensus 267 L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~--~~---~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 267 LKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNE--DM---EVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGG--GH---HHHHTCTTCSEEECCSSSCCCC
T ss_pred cCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCc--Ch---hHhhccccCCEEEccCCccccc
Confidence 5555555555542 2 2345555555555555555444 32 223445666 666666666554
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=213.32 Aligned_cols=247 Identities=21% Similarity=0.267 Sum_probs=195.9
Q ss_pred EEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEccc
Q 037331 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122 (330)
Q Consensus 43 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 122 (330)
.+.++..+.+++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345666666665 4555443 6788899998888877777888889999999999888877777888889999999999
Q ss_pred CcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeecccc-CCcCcccccCCCCCcEEEccCCccCCCC
Q 037331 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFI 201 (330)
Q Consensus 123 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 201 (330)
|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++.++.. .......+..+++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 988866666788888999999998888765566788888999999887543 3333345778889999999999887 44
Q ss_pred cccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCC
Q 037331 202 PPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNL 281 (330)
Q Consensus 202 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 281 (330)
| .+..+++|+.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..|..+
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 4 467788899999999988844444444 78899999999999887778888888999999999999887666778888
Q ss_pred CCccEEEcccCccC
Q 037331 282 RHLSVLSLMMNNLT 295 (330)
Q Consensus 282 ~~L~~l~l~~n~l~ 295 (330)
++|+.|++++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999988865
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.6e-27 Score=213.82 Aligned_cols=248 Identities=23% Similarity=0.264 Sum_probs=191.0
Q ss_pred EEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccC
Q 037331 44 TALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN 123 (330)
Q Consensus 44 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 123 (330)
+.++..+.+++ .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45566666665 4454443 57888888888888777777888888888888888888777778888888888888888
Q ss_pred cCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeecccc-CCcCcccccCCCCCcEEEccCCccCCCCc
Q 037331 124 SFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNL-QGQILTEIGNLQNLEYLVLGENNLSGFIP 202 (330)
Q Consensus 124 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 202 (330)
.+....+..|..+++|++|++++|.+....+..+..+++|+.|+++++.. .......+..+++|+.|++++|.++. +|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 88866666788888888888888888755556778888888888887443 33333357778888888888888874 33
Q ss_pred ccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCC
Q 037331 203 PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLR 282 (330)
Q Consensus 203 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 282 (330)
.+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 466788888888888888744444444 788888888888888877777788888888888888888866666778888
Q ss_pred CccEEEcccCccCCC
Q 037331 283 HLSVLSLMMNNLTTE 297 (330)
Q Consensus 283 ~L~~l~l~~n~l~~~ 297 (330)
+|+.|++++|++.-+
T Consensus 291 ~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 291 YLVELHLHHNPWNCD 305 (452)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEccCCCcCCC
Confidence 888888888887644
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.1e-27 Score=206.42 Aligned_cols=231 Identities=22% Similarity=0.264 Sum_probs=155.6
Q ss_pred CcccEEEccCCccCccCchhhccCCCCcEEEecCcccccc--cCccccCCCCCcEEEcccCcCCCCCCccccCCccccee
Q 037331 65 SFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGS--FSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETL 142 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 142 (330)
++|++|+++++.+.......|..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4666666666666643344456666677777766665522 1344445666777777766665 344556666677777
Q ss_pred ecccccccccCC-CCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCC-CCcccccCCCCCcEEEecCCc
Q 037331 143 RAQFNIIGGTIP-SRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG-FIPPTIFNISTIRVLNLLGNQ 220 (330)
Q Consensus 143 ~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 220 (330)
++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777766653332 356666777777777776665555566677777777777777764 356667777788888888887
Q ss_pred ccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCC-CccEEEcccCccCCC
Q 037331 221 LSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLR-HLSVLSLMMNNLTTE 297 (330)
Q Consensus 221 ~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~n~l~~~ 297 (330)
+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|+++..
T Consensus 187 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7743344444 677888888888887766565677778888888888888777777777774 788888888887765
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.1e-27 Score=206.46 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=216.5
Q ss_pred HhhcCCccchhcCCCcC--CCCceeeeeeeeCCCCceEEEEEccCCcccc----ccCCcc--cCCCcccEEEccCCccCc
Q 037331 8 KAHVLDYRSALANNWSI--FYPICSCVGISCGSRHQRVTALNLLDMGLRG----TIPGHL--GNLSFLVSLDISENNFHG 79 (330)
Q Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~----~~~~~~--~~~~~L~~L~l~~~~~~~ 79 (330)
+..+.|+++|+.. |.. ..++|+|.+.-|.+... .-.-|...+ ..+..+ ...+.++.|+++++.+.
T Consensus 22 ~~~~~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~- 94 (328)
T 4fcg_A 22 STALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP- 94 (328)
T ss_dssp -CCCCCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-
T ss_pred cccCchHHHHHHH-HHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-
Confidence 4455788999975 855 34678886654421100 000011111 111111 13467888888888887
Q ss_pred cCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCC
Q 037331 80 HLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGN 159 (330)
Q Consensus 80 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 159 (330)
.++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 56666777888888888888888 77777888888888888888887 66777888888888888887766666654332
Q ss_pred CCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEE
Q 037331 160 LSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYL 239 (330)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 239 (330)
. .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++|
T Consensus 173 ------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L 234 (328)
T 4fcg_A 173 ------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEEL 234 (328)
T ss_dssp ------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEE
T ss_pred ------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEE
Confidence 1 11223567899999999999998 78888999999999999999998 7877766 79999999
Q ss_pred EccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEec
Q 037331 240 TLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQ 318 (330)
Q Consensus 240 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~ 318 (330)
++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+. .|.. +..++.+ .+++.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--iP~~---l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--LPSL---IAQLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC--CCGG---GGGSCTTCEEECC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh--ccHH---HhhccCceEEeCC
Confidence 9999999989999999999999999999999989999999999999999999998887 7744 4666777 88888
Q ss_pred cccccccC
Q 037331 319 LNNCNICG 326 (330)
Q Consensus 319 ~n~~~~~~ 326 (330)
.+.+..++
T Consensus 310 ~~~~~~l~ 317 (328)
T 4fcg_A 310 PHLQAQLD 317 (328)
T ss_dssp GGGSCC--
T ss_pred HHHHHHHh
Confidence 87776554
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=211.36 Aligned_cols=269 Identities=19% Similarity=0.196 Sum_probs=225.0
Q ss_pred EEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCc
Q 037331 45 ALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNS 124 (330)
Q Consensus 45 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 124 (330)
..+.+++.++ .+|..+. ++|++|++++|.+.......|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3788888887 4565544 589999999999987666689999999999999999998778889999999999999999
Q ss_pred CCCCCCccccCCcccceeecccccccccCCC--CCCCCCCccEEEeeccc-cCCcCcccccCCCCCcEEEccCCccCCCC
Q 037331 125 FTGLIPNSLFNLSRLETLRAQFNIIGGTIPS--RIGNLSKLVNLGIGFSN-LQGQILTEIGNLQNLEYLVLGENNLSGFI 201 (330)
Q Consensus 125 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 201 (330)
+++..+..+..+++|++|++++|.+. .++. .+..+++|+.|++++|. +....+..+..+++|++|++++|.+.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98665556899999999999999988 4554 78899999999999984 55555667889999999999999998777
Q ss_pred cccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhh---ccCCCCcEEEccCCcccC----CC
Q 037331 202 PPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSI---TNASNLIGLDFTSNSFSG----HI 274 (330)
Q Consensus 202 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~ 274 (330)
+..+..+++|++|++++|.+. .++......+++|+.|++++|.+.+..+..+ ...+.++.++++++.+.+ .+
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 888999999999999999986 7777666568999999999999986544433 346678899999988765 46
Q ss_pred CccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 275 PNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 275 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
|..+..+++|++|++++|++++++.. .+..++.| .+++++|+++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~-----~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDG-----IFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCBC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHH-----HHhcCCCCCEEEeeCCCcc
Confidence 77789999999999999999976322 24677889 9999999985
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-27 Score=205.73 Aligned_cols=245 Identities=21% Similarity=0.263 Sum_probs=209.9
Q ss_pred CceeeeeeeeCCC---------CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCcc--CchhhccCCCCcEEE
Q 037331 27 PICSCVGISCGSR---------HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGH--LLKELGQLHRLRVVS 95 (330)
Q Consensus 27 ~~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~ 95 (330)
..|.|.++.|... .+++++|+++++.++...+..|.++++|+.|++++|.+... .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4578888888742 25799999999999865555689999999999999988743 256677899999999
Q ss_pred ecCcccccccCccccCCCCCcEEEcccCcCCCCCC-ccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccC
Q 037331 96 FAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIP-NSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQ 174 (330)
Q Consensus 96 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (330)
+++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999998 566778899999999999999986554 57889999999999999998778888999999999999999887
Q ss_pred C-cCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchh
Q 037331 175 G-QILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNS 253 (330)
Q Consensus 175 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 253 (330)
. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.+..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 5 46677889999999999999998777888889999999999999998 555543447899999999999999888888
Q ss_pred hccCC-CCcEEEccCCcccCC
Q 037331 254 ITNAS-NLIGLDFTSNSFSGH 273 (330)
Q Consensus 254 ~~~~~-~L~~L~l~~n~l~~~ 273 (330)
+..++ +|+.|++++|.+...
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECS
T ss_pred HHhhhccCCEEEccCCCeecc
Confidence 88885 999999999998753
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.4e-27 Score=221.45 Aligned_cols=294 Identities=16% Similarity=0.109 Sum_probs=213.9
Q ss_pred hhcCCCcCCCCcee-eeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEE
Q 037331 17 ALANNWSIFYPICS-CVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVS 95 (330)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 95 (330)
.+. +|..+.+||. +.++.|.....+ ++......... +. --.+.+++.+++.++.+.......+..+++|++|+
T Consensus 8 ~l~-~~~~~~~C~~~~~~~~c~~~~~~---i~~~~~~~~~~-~~-~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~ 81 (597)
T 3oja_B 8 NVK-PRQPEYKCIDSNLQYDCVFYDVH---IDMQTQDVYFG-FE-DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSCE---ECSSCCCCEES-CS-SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEE
T ss_pred ccc-CCCCCCcCcccCcCceeEecCce---ecccccccccC-cc-cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEE
Confidence 335 5988888874 333444322111 12111111111 11 22468899999999998866667788999999999
Q ss_pred ecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCC
Q 037331 96 FAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQG 175 (330)
Q Consensus 96 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (330)
+++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 99999998888899999999999999999998888889999999999999999985445557899999999999999987
Q ss_pred cCcccccCCCCCcEEEccCCccCCCCcccccC----------------C---------------------CCCcEEEecC
Q 037331 176 QILTEIGNLQNLEYLVLGENNLSGFIPPTIFN----------------I---------------------STIRVLNLLG 218 (330)
Q Consensus 176 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----------------l---------------------~~L~~L~l~~ 218 (330)
..+..+..+++|+.|++++|.+++.....+.. . ++|+.|++++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 77778999999999999999887532222111 1 1244444444
Q ss_pred CcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCC
Q 037331 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298 (330)
Q Consensus 219 ~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 298 (330)
|.+++ +..+. .+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+
T Consensus 242 n~l~~--~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i- 316 (597)
T 3oja_B 242 NNLTD--TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV- 316 (597)
T ss_dssp SCCCC--CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-
T ss_pred CCCCC--Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-
Confidence 44432 23333 57788888888888887777778888888888888888874 566667788888888888888765
Q ss_pred CCCcccccccccceE-EEEeccccccccC
Q 037331 299 SSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 299 ~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
+. .+..++.| .|++++|+++.++
T Consensus 317 --~~---~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 317 --ER---NQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp --GG---GHHHHTTCSEEECCSSCCCCCC
T ss_pred --Cc---ccccCCCCCEEECCCCCCCCcC
Confidence 21 23567788 8888888887654
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=211.54 Aligned_cols=247 Identities=22% Similarity=0.218 Sum_probs=212.5
Q ss_pred cccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecc
Q 037331 66 FLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQ 145 (330)
Q Consensus 66 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 145 (330)
....++..+..+. .++..+. ++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3557788777776 4554443 689999999999998888899999999999999999998778899999999999999
Q ss_pred cccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCcc-CCCCcccccCCCCCcEEEecCCccccc
Q 037331 146 FNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNL-SGFIPPTIFNISTIRVLNLLGNQLSGH 224 (330)
Q Consensus 146 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~ 224 (330)
+|.+....+..+..+++|+.|++++|.+.......+..+++|++|++++|.. ....+..+..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 9999865566789999999999999998876666788999999999999544 4334456788999999999999998 7
Q ss_pred CCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCccc
Q 037331 225 LPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRW 304 (330)
Q Consensus 225 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 304 (330)
+|. +. .+++|++|+|++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|+++++ .+
T Consensus 200 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~--- 272 (440)
T 3zyj_A 200 IPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL--PH--- 272 (440)
T ss_dssp CCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC--CT---
T ss_pred ccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc--Ch---
Confidence 764 34 689999999999999988888999999999999999999988888899999999999999999988 44
Q ss_pred ccccccceE-EEEecccccc
Q 037331 305 SFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 305 ~~l~~l~~l-~l~l~~n~~~ 323 (330)
..+..++.| .+++++|++.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 234667889 9999999984
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.7e-26 Score=211.54 Aligned_cols=247 Identities=20% Similarity=0.200 Sum_probs=212.2
Q ss_pred cccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecc
Q 037331 66 FLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQ 145 (330)
Q Consensus 66 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 145 (330)
....++..+..+. .++..+. +++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567888877776 3454333 689999999999998888899999999999999999998888899999999999999
Q ss_pred cccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCc-cCCCCcccccCCCCCcEEEecCCccccc
Q 037331 146 FNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENN-LSGFIPPTIFNISTIRVLNLLGNQLSGH 224 (330)
Q Consensus 146 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 224 (330)
+|.+....+..+..+++|+.|++++|.+.......+..+++|++|++++|. +....+..+..+++|++|++++|.+. .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 999986666678899999999999999886666678899999999999854 44334456788999999999999998 6
Q ss_pred CCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCccc
Q 037331 225 LPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRW 304 (330)
Q Consensus 225 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 304 (330)
+|. +. .+++|++|+|++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++++. .+
T Consensus 211 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~--- 283 (452)
T 3zyi_A 211 MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PH--- 283 (452)
T ss_dssp CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CT---
T ss_pred ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--Ch---
Confidence 654 34 689999999999999988899999999999999999999987788899999999999999999987 44
Q ss_pred ccccccceE-EEEecccccc
Q 037331 305 SFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 305 ~~l~~l~~l-~l~l~~n~~~ 323 (330)
..+..++.| .+++++|++.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 234667889 9999999983
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.3e-29 Score=216.65 Aligned_cols=203 Identities=22% Similarity=0.221 Sum_probs=119.5
Q ss_pred CCCCcEEEcccCcCCCCCCccc--cCCcccceeecccccccccCCCCCCCC-----CCccEEEeeccccCCcCcccccCC
Q 037331 112 LSKLQILRLQNNSFTGLIPNSL--FNLSRLETLRAQFNIIGGTIPSRIGNL-----SKLVNLGIGFSNLQGQILTEIGNL 184 (330)
Q Consensus 112 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~ 184 (330)
+.+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+ ++|+.|++++|.+....+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555555444444433 4445555555555554433 3333333 566666666666655555556666
Q ss_pred CCCcEEEccCCccCCC--Ccccc--cCCCCCcEEEecCCcccc--cCCcchhcCCCCccEEEccCcccccccc-hhhccC
Q 037331 185 QNLEYLVLGENNLSGF--IPPTI--FNISTIRVLNLLGNQLSG--HLPSTIGHSLPNIKYLTLGANNLFGTIP-NSITNA 257 (330)
Q Consensus 185 ~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~-~~~~~~ 257 (330)
++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++..++..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 6666666666665432 12222 556777777777776651 2233333356777777777777765543 334556
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccccc
Q 037331 258 SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
++|+.|++++|.+. .+|..+. ++|++|++++|++++.|. +..++.| .+++++|+++..
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-------~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-------PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-------TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-------HhhCCCCCEEeccCCCCCCC
Confidence 77777777777777 5666554 677778887777776621 3566777 777887777654
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4e-26 Score=209.84 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=39.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|++++|.+.+..+ +.++++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 566666666666654322 5556666666666555543222 4555555555555554442211 334444444444
Q ss_pred ccCc
Q 037331 121 QNNS 124 (330)
Q Consensus 121 ~~~~ 124 (330)
++|.
T Consensus 142 ~~n~ 145 (466)
T 1o6v_A 142 SSNT 145 (466)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 4433
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.7e-26 Score=208.33 Aligned_cols=262 Identities=25% Similarity=0.352 Sum_probs=154.9
Q ss_pred CCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccC------------
Q 037331 39 RHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS------------ 106 (330)
Q Consensus 39 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------ 106 (330)
..+++++|++++|.+.+..+ +.++++|++|++++|.+.... .+..+++|++|++++|.+.+...
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 34678888888887765433 777788888888877766432 26677777777777776553210
Q ss_pred -------ccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcc
Q 037331 107 -------SWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILT 179 (330)
Q Consensus 107 -------~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 179 (330)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... .
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence 1244566777777777766532 235566666666666666553322 34444555555555444321 2
Q ss_pred c----------------------ccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCcc
Q 037331 180 E----------------------IGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK 237 (330)
Q Consensus 180 ~----------------------l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 237 (330)
. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+. .++. +. .+++|+
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~ 312 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLE-DISP-IS-NLKNLT 312 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCS-CCGG-GG-GCTTCS
T ss_pred hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCccc-Cchh-hc-CCCCCC
Confidence 2 44455555555555555422 21 445555666666666555 2322 22 456666
Q ss_pred EEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEE
Q 037331 238 YLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLY 316 (330)
Q Consensus 238 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~ 316 (330)
.|++++|.+.+..+ +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|++++. .+ +..++.| .++
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~ 381 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHNQISDL--TP-----LANLTRITQLG 381 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCBC--GG-----GTTCTTCCEEE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCCccCcc--ch-----hhcCCCCCEEe
Confidence 66666666654433 4566667777777766663 2 3466777777777777777665 22 4566777 778
Q ss_pred eccccccccC
Q 037331 317 FQLNNCNICG 326 (330)
Q Consensus 317 l~~n~~~~~~ 326 (330)
+++|+++..+
T Consensus 382 l~~n~~~~~p 391 (466)
T 1o6v_A 382 LNDQAWTNAP 391 (466)
T ss_dssp CCCEEEECCC
T ss_pred ccCCcccCCc
Confidence 8888777644
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.8e-27 Score=200.47 Aligned_cols=224 Identities=20% Similarity=0.182 Sum_probs=147.1
Q ss_pred EEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccC
Q 037331 44 TALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN 123 (330)
Q Consensus 44 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 123 (330)
+.++..+.+++ .+|..+ .++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45667776665 334433 467888888888887666667778888888888888887666777778888888888888
Q ss_pred c-CCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCc
Q 037331 124 S-FTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIP 202 (330)
Q Consensus 124 ~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 202 (330)
. +....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.++...+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677777777777777777765555566666677777776666654444445566666666666666654444
Q ss_pred ccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 203 PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 203 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4455566666666666666533344443 4566666666666665544444556666666666666554
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.8e-28 Score=211.71 Aligned_cols=267 Identities=16% Similarity=0.167 Sum_probs=212.5
Q ss_pred CCcCCCCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCc-cCchhhc-------cCCCCc
Q 037331 21 NWSIFYPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHG-HLLKELG-------QLHRLR 92 (330)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~ 92 (330)
+|+....|+.+..+.......+++.+++.++.+ .+|..+... |+.|+++++.+.. ..+..+. .+++|+
T Consensus 23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 365555555555444433446788899999988 566655544 8899999988843 3444443 689999
Q ss_pred EEEecCcccccccCccc--cCCCCCcEEEcccCcCCCCCCccccCC-----cccceeecccccccccCCCCCCCCCCccE
Q 037331 93 VVSFAYNKLSGSFSSWI--GVLSKLQILRLQNNSFTGLIPNSLFNL-----SRLETLRAQFNIIGGTIPSRIGNLSKLVN 165 (330)
Q Consensus 93 ~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 165 (330)
+|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|+.
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 99999999998888765 8899999999999999966 7777776 89999999999999777788999999999
Q ss_pred EEeeccccCCc--Ccccc--cCCCCCcEEEccCCccCCC--Cc-ccccCCCCCcEEEecCCcccccCCcchhcCCCCccE
Q 037331 166 LGIGFSNLQGQ--ILTEI--GNLQNLEYLVLGENNLSGF--IP-PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238 (330)
Q Consensus 166 L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 238 (330)
|++++|.+... .+..+ ..+++|++|++++|.++.. .+ ..+..+++|++|++++|.+.+..+...+..+++|+.
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 99999986543 22333 7889999999999999731 22 333577999999999999986554444436799999
Q ss_pred EEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 239 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
|++++|.+. .+|..+. ++|+.|++++|++.+ +|. +..+++|++|++++|++++.
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCCC
Confidence 999999998 6676665 899999999999985 466 89999999999999999864
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.5e-26 Score=194.01 Aligned_cols=226 Identities=21% Similarity=0.252 Sum_probs=194.2
Q ss_pred cEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccc
Q 037331 68 VSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFN 147 (330)
Q Consensus 68 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 147 (330)
++++.+++.+.. ++..+ .++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777777763 34332 468999999999999777778899999999999999998777889999999999999999
Q ss_pred c-ccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCC
Q 037331 148 I-IGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLP 226 (330)
Q Consensus 148 ~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 226 (330)
. +....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++ .++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccC
Confidence 7 66555778899999999999999988777777889999999999999998666666888999999999999998 666
Q ss_pred cchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 227 STIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 227 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 55444789999999999999988888899999999999999999976556789999999999999998865
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=208.95 Aligned_cols=258 Identities=20% Similarity=0.185 Sum_probs=193.3
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
..++..++..+.+.......+..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 346666777777765555556677889999999888887767788888899999999888875443 778888999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+.. ..++|++|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 988876332 337888888888888754333 357788899988888766666777788899999998888765
Q ss_pred Cccccc-CCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCcccc
Q 037331 201 IPPTIF-NISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFG 279 (330)
Q Consensus 201 ~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 279 (330)
.+..+. .+++|++|++++|.++ .++... .+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhh
Confidence 555553 6788999999998887 444332 378899999999888854 444778888999999999888 5777788
Q ss_pred CCCCccEEEcccCccC-CCCCCCcccccccccceE-EEEec
Q 037331 280 NLRHLSVLSLMMNNLT-TESSSVDRWSFLSSFTLL-YLYFQ 318 (330)
Q Consensus 280 ~l~~L~~l~l~~n~l~-~~~~~~~~~~~l~~l~~l-~l~l~ 318 (330)
.+++|+.|++++|+++ +. .+ ..+..++.| .++++
T Consensus 235 ~l~~L~~L~l~~N~~~~~~--~~---~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGT--LR---DFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCTTCCEEECTTCCCBHHH--HH---HHHHTCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcC--HH---HHHhccccceEEECC
Confidence 8889999999988887 32 23 234555566 66665
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=8.4e-25 Score=208.16 Aligned_cols=143 Identities=24% Similarity=0.230 Sum_probs=120.0
Q ss_pred ccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCc
Q 037331 52 GLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPN 131 (330)
Q Consensus 52 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 131 (330)
+++ .+|..+. ++++.|+|++|.++...+.+|.++++|++|++++|.+..+.+++|..+++|++|++++|.+....+.
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 444 4565442 4799999999999977778899999999999999999977888899999999999999999977778
Q ss_pred cccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCc-CcccccCCCCCcEEEccCCcc
Q 037331 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQ-ILTEIGNLQNLEYLVLGENNL 197 (330)
Q Consensus 132 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 197 (330)
.|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 899999999999999999866566789999999999999987643 345566677777777776654
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3e-24 Score=196.37 Aligned_cols=254 Identities=18% Similarity=0.176 Sum_probs=144.8
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
.+++++|++++|.+++. + +..+++|++|++++|.+... .+..+++|++|++++|.+.+ ++ +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 37788888888888764 3 77888888888888887753 26778888888888888774 33 67778888888
Q ss_pred cccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCC
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSG 199 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 199 (330)
+++|.+++. + +..+++|++|++++|...+.+ .+..+++|+.|++++|.+... + +..+++|+.|++++|.+++
T Consensus 134 l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe
Confidence 888877753 2 556666666666666433233 244555566666655555431 1 4445555555555555442
Q ss_pred CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchh--------------------------
Q 037331 200 FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNS-------------------------- 253 (330)
Q Consensus 200 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-------------------------- 253 (330)
. .+..+++|+.|++++|.++ .+| +. .+++|+.|++++|++.+..+..
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~-~ip--~~-~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLT-EID--VT-PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred e---ccccCCCCCEEECcCCccc-ccC--cc-ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 2 2344445555555555544 233 22 3444444444444444322111
Q ss_pred ---hccCCCCcEEEccCCcccCCCCc--------cccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccc
Q 037331 254 ---ITNASNLIGLDFTSNSFSGHIPN--------TFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNN 321 (330)
Q Consensus 254 ---~~~~~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~ 321 (330)
+..+++|+.|++++|...+.+|. .+..+++|++|++++|++++. . +..++.| .+++++|+
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~------l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL--D------VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC--C------CTTCTTCSEEECCSSC
T ss_pred cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc--c------cccCCcCcEEECCCCC
Confidence 12334555555555543332221 134455666666666666554 1 2445556 66666666
Q ss_pred cccc
Q 037331 322 CNIC 325 (330)
Q Consensus 322 ~~~~ 325 (330)
++.+
T Consensus 351 l~~l 354 (457)
T 3bz5_A 351 IQDF 354 (457)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 6543
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.9e-24 Score=196.44 Aligned_cols=225 Identities=20% Similarity=0.247 Sum_probs=185.8
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
+++++|+++++.+++. | .+..+++|++|++++|.+... .+..+++|++|++++|.+.+. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 7899999999999864 4 689999999999999998864 278899999999999999854 3 788999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+. + +..+++|++|++++|.+.+ + .+..+++|+.+++++|...... .+..+++|+.|++++|.+++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 99999854 3 7899999999999999985 3 3788999999999998654444 47789999999999999985
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGN 280 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (330)
++ +..+++|+.|++++|.++ .++ +. .+++|+.|++++|++.+ +| +..+++|+.|++++|.+.+..+ +.
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~-~~~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~ 252 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNIT-KLD--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---ST 252 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred ec--cccCCCCCEEECcCCcCC-eec--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HH
Confidence 44 778999999999999998 443 44 78999999999999986 55 7789999999999999986433 33
Q ss_pred CCCccEEEcccCcc
Q 037331 281 LRHLSVLSLMMNNL 294 (330)
Q Consensus 281 l~~L~~l~l~~n~l 294 (330)
+++|+.+++++|.+
T Consensus 253 l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 253 LSKLTTLHCIQTDL 266 (457)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCCCEEeccCCCC
Confidence 44444444444333
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.4e-24 Score=183.72 Aligned_cols=216 Identities=24% Similarity=0.306 Sum_probs=155.0
Q ss_pred CceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccC
Q 037331 27 PICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS 106 (330)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 106 (330)
++|.|.|..|.-. ...+.++++++.++ .+|..+. ++++.|+++++.+....+..|..+++|++|++++|.+....+
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 6899988777522 34678999999887 4565443 678999999998886666678889999999999998886666
Q ss_pred ccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCC
Q 037331 107 SWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQN 186 (330)
Q Consensus 107 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 186 (330)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 66788899999999998888666667778888888888888877555555667777777777777666544444566667
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccc
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLF 247 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ 247 (330)
|++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 777777766666444445556666666666666665 444443335666666666666554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=196.11 Aligned_cols=239 Identities=18% Similarity=0.123 Sum_probs=195.6
Q ss_pred cccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecc
Q 037331 66 FLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQ 145 (330)
Q Consensus 66 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 145 (330)
.++..+++.+.+.......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666654445556778899999999999997777889999999999999999985543 8899999999999
Q ss_pred cccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccC
Q 037331 146 FNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHL 225 (330)
Q Consensus 146 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 225 (330)
+|.+.+. + ..++|+.|++++|.+..... ..+++|++|++++|.++...+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998732 2 34899999999998875443 34688999999999999766778888999999999999998555
Q ss_pred CcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccc
Q 037331 226 PSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWS 305 (330)
Q Consensus 226 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~ 305 (330)
+..+...+++|++|++++|.+.+. +. ...+++|+.|++++|.+.+ ++..+..+++|++|++++|++++++.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~------ 231 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEK------ 231 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECT------
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhh------
Confidence 555554689999999999999854 33 3358999999999999984 56668999999999999999997632
Q ss_pred cccccceE-EEEecccccc
Q 037331 306 FLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 306 ~l~~l~~l-~l~l~~n~~~ 323 (330)
.+..++.| .+++++|+++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 23667889 9999999996
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=200.80 Aligned_cols=219 Identities=21% Similarity=0.209 Sum_probs=143.2
Q ss_pred cCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccce
Q 037331 62 GNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLET 141 (330)
Q Consensus 62 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 141 (330)
..+++|+.|++++|.+....+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 344567777777777666555666777777777777776664443 666677777777777665322 2256777
Q ss_pred eecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCccccc-CCCCCcEEEecCCc
Q 037331 142 LRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIF-NISTIRVLNLLGNQ 220 (330)
Q Consensus 142 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 220 (330)
|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 77777766643332 346677777777776665555666677777777777777655555554 56777777777777
Q ss_pred ccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccC
Q 037331 221 LSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLT 295 (330)
Q Consensus 221 ~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~ 295 (330)
++ .++... .+++|+.|+|++|.+.+..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus 181 l~-~~~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IY-DVKGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CC-EEECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cccccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 76 333322 36777777777777775433 3667777777777777777 35666677777777777777766
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.7e-24 Score=201.04 Aligned_cols=268 Identities=24% Similarity=0.262 Sum_probs=171.4
Q ss_pred CccchhcCCCcCCCCceeeeeee--eC----CCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhc
Q 037331 13 DYRSALANNWSIFYPICSCVGIS--CG----SRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELG 86 (330)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 86 (330)
|+..+... |....++|.|.+.. |. -...+++.|+++++.++ .+|..+. ++|+.|++++|.+.. ++.
T Consensus 7 ~~~~~w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~--- 78 (622)
T 3g06_A 7 EYDAVWSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--- 78 (622)
T ss_dssp ---CHHHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---
T ss_pred HHHHHHHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---
Confidence 56666675 99988999985421 11 11145888899888887 5566554 788888888888773 333
Q ss_pred cCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEE
Q 037331 87 QLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNL 166 (330)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 166 (330)
.+++|++|++++|.++ .+|. .+++|++|++++|.+.+. |. .+++|++|++++|.+. .+|.. +++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEE
Confidence 4678888888888877 4444 567888888888877743 33 4566777777777665 34432 3566666
Q ss_pred EeeccccCCcCcccc-----------------cCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcch
Q 037331 167 GIGFSNLQGQILTEI-----------------GNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTI 229 (330)
Q Consensus 167 ~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 229 (330)
++++|.+... +..+ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.
T Consensus 147 ~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~-- 218 (622)
T 3g06_A 147 SVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA-- 218 (622)
T ss_dssp ECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC--
T ss_pred ECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC--
Confidence 6666655431 1111 122555566666655552 222 1345666666666555 4443
Q ss_pred hcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccc
Q 037331 230 GHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSS 309 (330)
Q Consensus 230 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~ 309 (330)
.+++|+.|++++|.+.+ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++.+ |. .+..
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l---p~---~l~~ 282 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL---PE---SLIH 282 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC---CG---GGGG
T ss_pred --CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC---CH---HHhh
Confidence 24678888888887774 44 34577888888888877 4554 567888888888888754 32 2456
Q ss_pred cceE-EEEeccccccc
Q 037331 310 FTLL-YLYFQLNNCNI 324 (330)
Q Consensus 310 l~~l-~l~l~~n~~~~ 324 (330)
++.| .+++++|+++.
T Consensus 283 l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 283 LSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCTTCEEECCSCCCCH
T ss_pred ccccCEEEecCCCCCC
Confidence 7778 88888888764
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=179.19 Aligned_cols=207 Identities=21% Similarity=0.214 Sum_probs=113.4
Q ss_pred CcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeec
Q 037331 65 SFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRA 144 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 144 (330)
++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35677777777666555556666677777777777666555556666666777777666666555555666666666666
Q ss_pred ccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC-CcccccCCCCCcEEEecCCcccc
Q 037331 145 QFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF-IPPTIFNISTIRVLNLLGNQLSG 223 (330)
Q Consensus 145 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 223 (330)
++|.+.+..+..+..+ ++|++|++++|.+... +|..+..+++|++|++++|.+++
T Consensus 108 ~~n~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 VETNLASLENFPIGHL------------------------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTSCCCCSTTCCCTTC------------------------TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCccccCchhcccC------------------------CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 6655543333234444 4444444444444431 34445555555555555555542
Q ss_pred cCCcchhcCCCCcc----EEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 224 HLPSTIGHSLPNIK----YLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 224 ~~~~~l~~~~~~L~----~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
..+..+. .+++|+ +|++++|.+.+..+..+ ...+|+.|++++|.+.+..+..|..+++|++|++++|+++..
T Consensus 164 ~~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 164 IYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCHHHhh-hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 2222222 233333 56666666553333322 233566666666666544444455666666666666666544
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-25 Score=204.27 Aligned_cols=235 Identities=20% Similarity=0.234 Sum_probs=202.5
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.+.+..|..|..+++|++|++++|.+....+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 589999999999998878889999999999999999875444 889999999999999988433 2389999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCccccc-CCCCCcEEEccCCccCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIG-NLQNLEYLVLGENNLSG 199 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~ 199 (330)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999865544 457899999999999977788889999999999999999877776665 78999999999999985
Q ss_pred CCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc-CCCCccc
Q 037331 200 FIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS-GHIPNTF 278 (330)
Q Consensus 200 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~ 278 (330)
. + ....+++|+.|++++|.++ .+|+.+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred c-c-ccccCCCCCEEECCCCCCC-CCCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 4 3 2346899999999999998 5666665 78999999999999984 6777888999999999999987 5667778
Q ss_pred cCCCCccEEEcc
Q 037331 279 GNLRHLSVLSLM 290 (330)
Q Consensus 279 ~~l~~L~~l~l~ 290 (330)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 889999988886
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.4e-23 Score=178.14 Aligned_cols=203 Identities=23% Similarity=0.267 Sum_probs=148.5
Q ss_pred CCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEcc
Q 037331 114 KLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLG 193 (330)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 193 (330)
++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455666666666666666655555567778888888888
Q ss_pred CCccCCCCcccccCCCCCcEEEecCCcccc-cCCcchhcCCCCccEEEccCcccccccchhhccCCCCc----EEEccCC
Q 037331 194 ENNLSGFIPPTIFNISTIRVLNLLGNQLSG-HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLI----GLDFTSN 268 (330)
Q Consensus 194 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~----~L~l~~n 268 (330)
+|.+....+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++.+..+..+..+++|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 888876555578889999999999999974 2566666 799999999999999877777777666666 8999999
Q ss_pred cccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 269 SFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 269 ~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
.+.+..+..+ ...+|++|++++|.+++. .+ ..+..++.| .+++++|+++
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~--~~---~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSV--PD---GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCC--CT---TTTTTCCSCCEEECCSSCBC
T ss_pred cccccCcccc-CCCcccEEECCCCceeec--CH---hHhcccccccEEEccCCccc
Confidence 9986555544 445899999999999987 33 234678889 9999999995
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.4e-23 Score=174.54 Aligned_cols=183 Identities=23% Similarity=0.265 Sum_probs=99.8
Q ss_pred CCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEcc
Q 037331 114 KLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLG 193 (330)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 193 (330)
+++.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44444444444443333344444444444444444442222233444555555555554443333344555566666666
Q ss_pred CCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC
Q 037331 194 ENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH 273 (330)
Q Consensus 194 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (330)
+|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 66665444445556666666666666665 44444333566666666666666655455556666666677766666644
Q ss_pred CCccccCCCCccEEEcccCccCCC
Q 037331 274 IPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 274 ~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.+..|..+++|+.|++++|++.-.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 444566666677777766666543
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.2e-23 Score=192.34 Aligned_cols=227 Identities=20% Similarity=0.249 Sum_probs=135.4
Q ss_pred ceEEEEEccCCccccccCCcccCCCcc-------------cEEEccCCccCccCchhhccCCCCcEEEecCcccccccCc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFL-------------VSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSS 107 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 107 (330)
.++++|++++|.+.+.+|..++++.+| ++|+++++.+.+ ++. -.++|++|++++|.+.+ +|.
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~ 108 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE 108 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc
Confidence 444455555555554555555544443 555555554442 111 12455666666665553 333
Q ss_pred cccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCC
Q 037331 108 WIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNL 187 (330)
Q Consensus 108 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 187 (330)
. +.+|++|++++|.+.+. +.. .++|++|++++|.+.+ +| .+..+++|+.|++++|.+.. ++.. ..+|
T Consensus 109 ~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L 175 (454)
T 1jl5_A 109 L---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSL 175 (454)
T ss_dssp C---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred c---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccc
Confidence 2 25666666666665532 211 1467777777777763 55 47777777777777776653 2222 3477
Q ss_pred cEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccC
Q 037331 188 EYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTS 267 (330)
Q Consensus 188 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 267 (330)
++|++++|.+++ +| .+..+++|+.|++++|.+. .+|.. .++|++|++++|.+. .+|. ++.+++|+.|++++
T Consensus 176 ~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCS
T ss_pred cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCC
Confidence 777777777764 44 4667777888888777776 44432 347788888888776 4553 67778888888888
Q ss_pred CcccCCCCccccCCCCccEEEcccCccCCCC
Q 037331 268 NSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298 (330)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 298 (330)
|.+.+ +|.. +++|++|++++|++++++
T Consensus 247 N~l~~-l~~~---~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 247 NLLKT-LPDL---PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp SCCSS-CCSC---CTTCCEEECCSSCCSCCC
T ss_pred CcCCc-cccc---ccccCEEECCCCcccccC
Confidence 87773 4432 356666666666666653
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.3e-22 Score=183.72 Aligned_cols=254 Identities=23% Similarity=0.280 Sum_probs=116.7
Q ss_pred eEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcc
Q 037331 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQ 121 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 121 (330)
++++|++++|.+++ +| .|.++++|++|++++|.+.. ++.. .++|++|++++|.+.+ +| .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 34444444444432 22 24444444444444444432 1111 1244444444444442 22 24444455555555
Q ss_pred cCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCC
Q 037331 122 NNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFI 201 (330)
Q Consensus 122 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 201 (330)
+|.+.+ +|.. .++|++|++++|.+. .+| .+..+++|+.|++++|.+.. ++. .+++|+.|++++|.+++ +
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-c
Confidence 444442 1211 124455555555444 333 24555555566555555442 111 12445555555555442 2
Q ss_pred cccccCCCCCcEEEecCCcccc--cCCcch-------------hcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 202 PPTIFNISTIRVLNLLGNQLSG--HLPSTI-------------GHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 202 ~~~l~~l~~L~~L~l~~~~~~~--~~~~~l-------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
|.. +++|+.|++++|.+++ .+|..+ ....++|+.|++++|++.+ +|.. +++|+.|+++
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 221 2455555555555542 111110 1012467777777777664 3432 4778888888
Q ss_pred CCcccCCCCccccCCCCccEEEcccCccCCCCCCCccccccc----------ccceE-EEEecccccccc
Q 037331 267 SNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLS----------SFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~----------~l~~l-~l~l~~n~~~~~ 325 (330)
+|.+. .+|. .+++|++|++++|++++.+..|.++..+. .++.| .+++++|+++.+
T Consensus 346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 88877 4555 46789999999999988665675554431 12678 999999998753
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.5e-26 Score=212.27 Aligned_cols=282 Identities=18% Similarity=0.167 Sum_probs=175.3
Q ss_pred eEEEEEccCCcccc----ccCCcccCCCcccEEEccCCccCccCchhhc-----cCCCCcEEEecCccccccc----Ccc
Q 037331 42 RVTALNLLDMGLRG----TIPGHLGNLSFLVSLDISENNFHGHLLKELG-----QLHRLRVVSFAYNKLSGSF----SSW 108 (330)
Q Consensus 42 ~l~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~ 108 (330)
++++|++++|.++. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57777777776653 3455566677777777777666533232222 2345777777777666422 344
Q ss_pred ccCCCCCcEEEcccCcCCCCCCcccc-----CCcccceeeccccccccc----CCCCCCCCCCccEEEeeccccCCcCc-
Q 037331 109 IGVLSKLQILRLQNNSFTGLIPNSLF-----NLSRLETLRAQFNIIGGT----IPSRIGNLSKLVNLGIGFSNLQGQIL- 178 (330)
Q Consensus 109 l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~- 178 (330)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+... ++..+..+++|+.|++++|.+.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 45567777777777766533222222 244777777777766532 34445566778888888776653321
Q ss_pred ----ccccCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCCcc----hhcCCCCccEEEccCccc
Q 037331 179 ----TEIGNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLPST----IGHSLPNIKYLTLGANNL 246 (330)
Q Consensus 179 ----~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~~L~~L~L~~n~~ 246 (330)
..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+.. +....++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 1122467888888888877643 4555666788888888888775332222 222336888888888887
Q ss_pred ccc----cchhhccCCCCcEEEccCCcccCCCCcccc-----CCCCccEEEcccCccCCCCCCCccc-ccccccceE-EE
Q 037331 247 FGT----IPNSITNASNLIGLDFTSNSFSGHIPNTFG-----NLRHLSVLSLMMNNLTTESSSVDRW-SFLSSFTLL-YL 315 (330)
Q Consensus 247 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~~l-~l 315 (330)
.+. ++..+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+++. ....+ ..+..++.| ++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS--SCSSLAATLLANHSLREL 403 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH--HHHHHHHHHHHCCCCCEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh--hHHHHHHHHHhCCCccEE
Confidence 754 445566778888888888887654333332 267888888888887742 11111 234567788 88
Q ss_pred Eecccccccc
Q 037331 316 YFQLNNCNIC 325 (330)
Q Consensus 316 ~l~~n~~~~~ 325 (330)
++++|+++..
T Consensus 404 ~l~~N~i~~~ 413 (461)
T 1z7x_W 404 DLSNNCLGDA 413 (461)
T ss_dssp ECCSSSCCHH
T ss_pred ECCCCCCCHH
Confidence 8888888653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=172.13 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=131.6
Q ss_pred ccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccc
Q 037331 61 LGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLE 140 (330)
Q Consensus 61 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 140 (330)
+.+++++++++++++.+. .++..+. ++++.|++++|.+....+..+..+++|++|++++|.++...+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556777888888877776 3343332 5777888888887766667777788888888888777643222 5667777
Q ss_pred eeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCc
Q 037331 141 TLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQ 220 (330)
Q Consensus 141 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 220 (330)
+|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777766 556666666667777776666665444556666666666666666664444445556666666666666
Q ss_pred ccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 221 LSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 221 ~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
++ .+|...+..+++|+.|++++|++. .+|..+...++|+.+++++|.+.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 65 555554445666666666666665 44555555566666666666553
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=4.1e-26 Score=209.39 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=137.3
Q ss_pred ceEEEEEccCCccccccCCcc-cCCC----cccEEEccCCccCc----cCchhhccCCCCcEEEecCcccccccCcccc-
Q 037331 41 QRVTALNLLDMGLRGTIPGHL-GNLS----FLVSLDISENNFHG----HLLKELGQLHRLRVVSFAYNKLSGSFSSWIG- 110 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~-~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~- 110 (330)
+++++|++++|.+.+..+..+ ..++ +|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 445555555555443222111 1122 45555555555442 2234445555555555555554422222111
Q ss_pred ----CCCCCcEEEcccCcCCCCC----CccccCCcccceeecccccccccCCCCCC-----CCCCccEEEeeccccCCc-
Q 037331 111 ----VLSKLQILRLQNNSFTGLI----PNSLFNLSRLETLRAQFNIIGGTIPSRIG-----NLSKLVNLGIGFSNLQGQ- 176 (330)
Q Consensus 111 ----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~- 176 (330)
..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+...
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 1334555555555554321 23334445556666655554322111111 133566666666555432
Q ss_pred ---CcccccCCCCCcEEEccCCccCCCC-----cccccCCCCCcEEEecCCccccc----CCcchhcCCCCccEEEccCc
Q 037331 177 ---ILTEIGNLQNLEYLVLGENNLSGFI-----PPTIFNISTIRVLNLLGNQLSGH----LPSTIGHSLPNIKYLTLGAN 244 (330)
Q Consensus 177 ---~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~L~~n 244 (330)
++..+..+++|++|++++|.+.+.. +.....+++|++|++++|.+++. ++..+. .+++|++|++++|
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCC
Confidence 2333445566666666666554321 11112355666666666665522 333333 4566666666666
Q ss_pred ccccccchhhcc-----CCCCcEEEccCCcccCC----CCccccCCCCccEEEcccCccCCCCCCCcccc-cccc-cceE
Q 037331 245 NLFGTIPNSITN-----ASNLIGLDFTSNSFSGH----IPNTFGNLRHLSVLSLMMNNLTTESSSVDRWS-FLSS-FTLL 313 (330)
Q Consensus 245 ~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~-~l~~-l~~l 313 (330)
.+.+..+..+.. .++|+.|++++|.+.+. ++..+..+++|++|++++|.+++. .+..+. .+.. .+.|
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~--~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVL 372 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH--HHHHHHHHHTSTTCCC
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc--cHHHHHHHHcCCCCce
Confidence 665433322221 24667777777766543 334455667777777777776654 332221 1221 4567
Q ss_pred -EEEecccccc
Q 037331 314 -YLYFQLNNCN 323 (330)
Q Consensus 314 -~l~l~~n~~~ 323 (330)
.+++++|+++
T Consensus 373 ~~L~L~~n~i~ 383 (461)
T 1z7x_W 373 RVLWLADCDVS 383 (461)
T ss_dssp CEEECTTSCCC
T ss_pred EEEECCCCCCC
Confidence 7777777776
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.2e-21 Score=168.67 Aligned_cols=200 Identities=22% Similarity=0.196 Sum_probs=173.1
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.+++.+++++ .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.++...+. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 67889999999987 4555453 6899999999999877778899999999999999999854433 68899999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999998 6778888999999999999999866667789999999999999998876666678899999999999999865
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCccccc
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFG 248 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~ 248 (330)
.+..+..+++|+.|++++|+++ .+|..++ ..+.|+.++|++|.+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCccC
Confidence 5556678999999999999998 8888888 67899999999998764
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.7e-25 Score=193.08 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=179.6
Q ss_pred CCCCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCC--CcccEEEccCCccCccCchhhccCCCCcEEEecCccc
Q 037331 24 IFYPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNL--SFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKL 101 (330)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 101 (330)
....|..|.++.+. ...++.++++++.+. +..+..+ ++++.|++.++.+....+. +..+++|+.|++++|.+
T Consensus 32 ~~~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 32 VSGVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TTSSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 34577789887764 234778999888765 3345555 7889999999888765444 56788999999999887
Q ss_pred ccc-cCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccc-cccc-cCCCCCCCCCCccEEEeecc-ccCCc-
Q 037331 102 SGS-FSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFN-IIGG-TIPSRIGNLSKLVNLGIGFS-NLQGQ- 176 (330)
Q Consensus 102 ~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~-~~~~~~~~~~~L~~L~l~~~-~~~~~- 176 (330)
.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+ .++..+..+++|+.|++++| .+...
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 754 6667788899999999998887666777778888888888888 4543 24444666778888888877 65532
Q ss_pred CcccccCCC-CCcEEEccCCc--cC-CCCcccccCCCCCcEEEecCCc-ccccCCcchhcCCCCccEEEccCcc-ccccc
Q 037331 177 ILTEIGNLQ-NLEYLVLGENN--LS-GFIPPTIFNISTIRVLNLLGNQ-LSGHLPSTIGHSLPNIKYLTLGANN-LFGTI 250 (330)
Q Consensus 177 ~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~ 250 (330)
.+..+..++ +|++|++++|. ++ ..++..+..+++|+.|++++|. +++..+..+. .+++|++|++++|. +....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHH
Confidence 344456677 78888888773 33 2345555667778888888777 5545555555 56778888887774 32222
Q ss_pred chhhccCCCCcEEEccCCcccCCCCccccCC-CCccEEEcccCccCCC
Q 037331 251 PNSITNASNLIGLDFTSNSFSGHIPNTFGNL-RHLSVLSLMMNNLTTE 297 (330)
Q Consensus 251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~l~~n~l~~~ 297 (330)
...+..+++|+.|++++| +... .+..+ ..++.|++++|.+++.
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccc
Confidence 234666777888888777 3322 22222 2355556777777776
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.5e-24 Score=191.39 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=177.5
Q ss_pred EEccCCccccccCCcccCCCcccEEEccCCccCccCc----hhhccCC-CCcEEEecCcccccccCccccCC-----CCC
Q 037331 46 LNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLL----KELGQLH-RLRVVSFAYNKLSGSFSSWIGVL-----SKL 115 (330)
Q Consensus 46 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 115 (330)
+.++.+.+.+.+|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888887777766666679999999998876665 6677788 89999999998886666555554 889
Q ss_pred cEEEcccCcCCCCCCccc----cCC-cccceeecccccccccCCCC----CCC-CCCccEEEeeccccCCcCcc----cc
Q 037331 116 QILRLQNNSFTGLIPNSL----FNL-SRLETLRAQFNIIGGTIPSR----IGN-LSKLVNLGIGFSNLQGQILT----EI 181 (330)
Q Consensus 116 ~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~l~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~----~l 181 (330)
++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+.. +.. ..+|+.|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999998876555533 344 78889999888876443322 223 35888888888877643332 23
Q ss_pred cCCC-CCcEEEccCCccCCCCcccc----cCC-CCCcEEEecCCccccc----CCcchhcCCCCccEEEccCcccccccc
Q 037331 182 GNLQ-NLEYLVLGENNLSGFIPPTI----FNI-STIRVLNLLGNQLSGH----LPSTIGHSLPNIKYLTLGANNLFGTIP 251 (330)
Q Consensus 182 ~~~~-~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~L~~n~~~~~~~ 251 (330)
..++ +|++|++++|.+++..+..+ ... ++|++|++++|.+.+. ++..+....++|++|+|++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 88888888888876555433 344 5888888888888732 444444234688888888888875443
Q ss_pred ----hhhccCCCCcEEEccCCcccC-------CCCccccCCCCccEEEcccCccCCC
Q 037331 252 ----NSITNASNLIGLDFTSNSFSG-------HIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 252 ----~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 334567788888888887442 2233566788888888888887654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.9e-22 Score=169.61 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=114.1
Q ss_pred cCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccce
Q 037331 62 GNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLET 141 (330)
Q Consensus 62 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 141 (330)
..+++|+.|++.++.+.. ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345566666666655542 2235556666666666666553 2 24555666666666666665554455556666666
Q ss_pred eecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcc
Q 037331 142 LRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQL 221 (330)
Q Consensus 142 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 221 (330)
|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666655544444455555666666655555544433445555666666666655544444445556666666666665
Q ss_pred cccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCC
Q 037331 222 SGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRH 283 (330)
Q Consensus 222 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 283 (330)
. .++...+..+++|+.|++++|.+.+ .++.|+.+++..|.+.+.+|..++.+..
T Consensus 194 ~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 K-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp S-CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred C-ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 5 3333322245566666666655432 2344555555555555555555554443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.4e-22 Score=169.37 Aligned_cols=207 Identities=19% Similarity=0.242 Sum_probs=180.8
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++.++.+... ..+..+++|+.|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 7799999999988642 348899999999999999875 347889999999999999999777777899999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 99999977777789999999999999999866666678999999999999998876666678999999999999999977
Q ss_pred CcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCC
Q 037331 201 IPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASN 259 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 259 (330)
.+..+..+++|+.|++++|.+.+ .++.++.+.+..|.+.+.+|..++.++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 77778899999999999998762 4668999999999999999988776554
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=175.74 Aligned_cols=201 Identities=19% Similarity=0.164 Sum_probs=111.0
Q ss_pred CCCcEEEcccCcCCCCCCccc--cCCcccceeecccccccccCC----CCCCCCCCccEEEeeccccCCcCcccccCCCC
Q 037331 113 SKLQILRLQNNSFTGLIPNSL--FNLSRLETLRAQFNIIGGTIP----SRIGNLSKLVNLGIGFSNLQGQILTEIGNLQN 186 (330)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 186 (330)
.+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555544444444 445555555555555443222 11234556666666666665555555566666
Q ss_pred CcEEEccCCccCCC--C--cccccCCCCCcEEEecCCcccccCCcc---hhcCCCCccEEEccCcccccccchhhccC--
Q 037331 187 LEYLVLGENNLSGF--I--PPTIFNISTIRVLNLLGNQLSGHLPST---IGHSLPNIKYLTLGANNLFGTIPNSITNA-- 257 (330)
Q Consensus 187 L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~~L~~L~L~~n~~~~~~~~~~~~~-- 257 (330)
|++|++++|.+.+. + +..+..+++|++|++++|.++ .++.. ++..+++|++|+|++|++.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666654321 1 112245566666667666664 33321 22245667777777777665545444444
Q ss_pred -CCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccc
Q 037331 258 -SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 258 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~ 324 (330)
++|+.|++++|.+. .+|..+. ++|++|++++|++++++. +..++.| .+++++|+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-------~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-------PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-------TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-------hhhCCCccEEECcCCCCCC
Confidence 56777777777776 4555442 567777777777766511 2445666 67777777654
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.5e-21 Score=164.64 Aligned_cols=190 Identities=21% Similarity=0.274 Sum_probs=128.8
Q ss_pred CceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccC
Q 037331 27 PICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS 106 (330)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 106 (330)
+|+.|.|..|. ...++++++++.++ .+|..+. ++++.|+++++.+....+..|..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 57788888886 45668899998887 4555444 588899999998887777778888899999999988887777
Q ss_pred ccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCC
Q 037331 107 SWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQN 186 (330)
Q Consensus 107 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 186 (330)
..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77888888888888888888666667777777777777777776443334455556666666555555333334445555
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCccc
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLS 222 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 222 (330)
|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 555555555554333334444455555555555443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3e-24 Score=192.57 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=167.4
Q ss_pred ccCCcccCCCcccEEEccCCccCccCc----hhhccCCCCcEEEecCccc---ccccCccc-------cCCCCCcEEEcc
Q 037331 56 TIPGHLGNLSFLVSLDISENNFHGHLL----KELGQLHRLRVVSFAYNKL---SGSFSSWI-------GVLSKLQILRLQ 121 (330)
Q Consensus 56 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l~ 121 (330)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+ ++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344556677778888888777765433 3355677788888877533 33333333 567788888888
Q ss_pred cCcCCC----CCCccccCCcccceeecccccccccCCC----CCCCC---------CCccEEEeeccccCCcC-c---cc
Q 037331 122 NNSFTG----LIPNSLFNLSRLETLRAQFNIIGGTIPS----RIGNL---------SKLVNLGIGFSNLQGQI-L---TE 180 (330)
Q Consensus 122 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~----~~~~~---------~~L~~L~l~~~~~~~~~-~---~~ 180 (330)
+|.+.. .++..+..+++|++|++++|.+....+. .+..+ ++|+.|++++|.+.... + ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887765 3455667777888888887776532222 22223 78888888888876322 2 24
Q ss_pred ccCCCCCcEEEccCCccCC-----CCcccccCCCCCcEEEecCCccc----ccCCcchhcCCCCccEEEccCcccccc--
Q 037331 181 IGNLQNLEYLVLGENNLSG-----FIPPTIFNISTIRVLNLLGNQLS----GHLPSTIGHSLPNIKYLTLGANNLFGT-- 249 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~~L~~L~L~~n~~~~~-- 249 (330)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+. .+++|++|+|++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhH
Confidence 5577889999999888762 12336777889999999999885 35666555 688899999999988754
Q ss_pred --cchhhcc--CCCCcEEEccCCcccC----CCCccc-cCCCCccEEEcccCccCCC
Q 037331 250 --IPNSITN--ASNLIGLDFTSNSFSG----HIPNTF-GNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 250 --~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~l~l~~n~l~~~ 297 (330)
++..+.. +++|+.|++++|.+.+ .++..+ .++++|++|++++|++++.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 4455533 8889999999998886 366665 5688999999999998876
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.9e-21 Score=162.80 Aligned_cols=199 Identities=17% Similarity=0.155 Sum_probs=128.1
Q ss_pred cccEEEccCCccCccCchhhccCCCCcEEEecCcc-cccccCccccCCCCCcEEEccc-CcCCCCCCccccCCcccceee
Q 037331 66 FLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNK-LSGSFSSWIGVLSKLQILRLQN-NSFTGLIPNSLFNLSRLETLR 143 (330)
Q Consensus 66 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 143 (330)
+|+.|+++++.+.......|..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888877775555567777777777777775 6655555667777777777776 666655555566666666666
Q ss_pred cccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCC-ccCCCCcccccCCCCCc-EEEecCCcc
Q 037331 144 AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGEN-NLSGFIPPTIFNISTIR-VLNLLGNQL 221 (330)
Q Consensus 144 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~ 221 (330)
+++|.+.+ +|. +..+++|+ .|+.|++++| .++...+..+..+++|+ .|++++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 66665542 332 33333332 1125666666 55544444556667777 777777777
Q ss_pred cccCCcchhcCCCCccEEEccCcc-cccccchhhccC-CCCcEEEccCCcccCCCCccccCCCCccEEEcccC
Q 037331 222 SGHLPSTIGHSLPNIKYLTLGANN-LFGTIPNSITNA-SNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292 (330)
Q Consensus 222 ~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 292 (330)
+ .+|...+.. ++|++|++++|+ +.+..+..+..+ ++|+.|++++|.+. .+|.. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 6 666655533 678888888874 765555666777 77888888888777 34443 5667777777665
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.1e-23 Score=182.41 Aligned_cols=251 Identities=18% Similarity=0.197 Sum_probs=196.5
Q ss_pred CcccEEEccCCccCccCchhhccC--CCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCC-CCccccCCcccce
Q 037331 65 SFLVSLDISENNFHGHLLKELGQL--HRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGL-IPNSLFNLSRLET 141 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 141 (330)
..++.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34789999988766 4556666 8999999999999866555 45789999999999998754 6777889999999
Q ss_pred eecccccccccCCCCCCCCCCccEEEeecc-ccCCc-CcccccCCCCCcEEEccCC-ccCCC-CcccccCCC-CCcEEEe
Q 037331 142 LRAQFNIIGGTIPSRIGNLSKLVNLGIGFS-NLQGQ-ILTEIGNLQNLEYLVLGEN-NLSGF-IPPTIFNIS-TIRVLNL 216 (330)
Q Consensus 142 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l 216 (330)
|++++|.+.+..+..+..+++|+.|++++| .+... .+..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999887667777888999999999998 45542 4445778999999999999 88743 566677899 9999999
Q ss_pred cCCc--cc-ccCCcchhcCCCCccEEEccCcc-cccccchhhccCCCCcEEEccCCc-ccCCCCccccCCCCccEEEccc
Q 037331 217 LGNQ--LS-GHLPSTIGHSLPNIKYLTLGANN-LFGTIPNSITNASNLIGLDFTSNS-FSGHIPNTFGNLRHLSVLSLMM 291 (330)
Q Consensus 217 ~~~~--~~-~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~ 291 (330)
++|. ++ +.++..+. .+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++
T Consensus 203 ~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9994 44 24555544 68999999999999 666677788899999999999995 3322233578899999999999
Q ss_pred CccCCCCCCCcccccccccceE-EEEeccccccccCCC
Q 037331 292 NNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICGKT 328 (330)
Q Consensus 292 n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~~~ 328 (330)
| ++.. .+..+. ..+ .+++++|+++.+..+
T Consensus 282 ~-i~~~-----~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDG-----TLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTT-----CHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred c-cCHH-----HHHHHH--hhCcceEEecccCccccCC
Confidence 9 3332 222222 346 777899999876654
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=173.83 Aligned_cols=227 Identities=17% Similarity=0.155 Sum_probs=180.6
Q ss_pred CCcccEEEccCCccCccCch---hhccCCCCcEEEecCcccccccCccc--cCCCCCcEEEcccCcCCCCCC----cccc
Q 037331 64 LSFLVSLDISENNFHGHLLK---ELGQLHRLRVVSFAYNKLSGSFSSWI--GVLSKLQILRLQNNSFTGLIP----NSLF 134 (330)
Q Consensus 64 ~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~ 134 (330)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888776532221 12345679999999999998888877 889999999999999986544 3445
Q ss_pred CCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCc--C--cccccCCCCCcEEEccCCccCCCCcc----ccc
Q 037331 135 NLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQ--I--LTEIGNLQNLEYLVLGENNLSGFIPP----TIF 206 (330)
Q Consensus 135 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~ 206 (330)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+... . ...+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999877778899999999999999986532 1 122367899999999999997 3333 246
Q ss_pred CCCCCcEEEecCCcccccCCcchhcCC---CCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCC
Q 037331 207 NISTIRVLNLLGNQLSGHLPSTIGHSL---PNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRH 283 (330)
Q Consensus 207 ~l~~L~~L~l~~~~~~~~~~~~l~~~~---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 283 (330)
.+++|++|++++|.+.+..|..+. .+ ++|++|++++|++. .+|..+. ++|+.|++++|++.+ +|. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCC
Confidence 789999999999999866676665 34 79999999999998 5666553 799999999999985 444 678999
Q ss_pred ccEEEcccCccCCC
Q 037331 284 LSVLSLMMNNLTTE 297 (330)
Q Consensus 284 L~~l~l~~n~l~~~ 297 (330)
|+.|++++|++++.
T Consensus 296 L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 296 VDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCEECSSTTTSCC
T ss_pred ccEEECcCCCCCCC
Confidence 99999999998763
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.6e-23 Score=183.24 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=193.8
Q ss_pred EEccCCccCccCchhhccCCCCcEEEecCcccccccC----ccccCCC-CCcEEEcccCcCCCCCCccccCC-----ccc
Q 037331 70 LDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS----SWIGVLS-KLQILRLQNNSFTGLIPNSLFNL-----SRL 139 (330)
Q Consensus 70 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 139 (330)
+.++.+.+.+..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888886666666666679999999999986665 6777888 99999999999987767666664 899
Q ss_pred ceeecccccccccCCCC----CCCC-CCccEEEeeccccCCcCcccc----cC-CCCCcEEEccCCccCCCCc----ccc
Q 037331 140 ETLRAQFNIIGGTIPSR----IGNL-SKLVNLGIGFSNLQGQILTEI----GN-LQNLEYLVLGENNLSGFIP----PTI 205 (330)
Q Consensus 140 ~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~----~~l 205 (330)
++|++++|.+.+..+.. +..+ ++|+.|++++|.+.......+ .. .++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999987554443 3344 799999999999876655443 33 3699999999999985443 334
Q ss_pred cCCC-CCcEEEecCCcccccCCcchh---cCC-CCccEEEccCcccccc----cchhhcc-CCCCcEEEccCCcccCCCC
Q 037331 206 FNIS-TIRVLNLLGNQLSGHLPSTIG---HSL-PNIKYLTLGANNLFGT----IPNSITN-ASNLIGLDFTSNSFSGHIP 275 (330)
Q Consensus 206 ~~l~-~L~~L~l~~~~~~~~~~~~l~---~~~-~~L~~L~L~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~ 275 (330)
...+ +|++|++++|.+++..+..+. ..+ ++|++|+|++|.+.+. ++..+.. .++|+.|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 999999999999854443322 134 5999999999999863 4445555 4599999999999986443
Q ss_pred ----ccccCCCCccEEEcccCccCCCCCCCccc----ccccccceE-EEEecccccccc
Q 037331 276 ----NTFGNLRHLSVLSLMMNNLTTESSSVDRW----SFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 276 ----~~~~~l~~L~~l~l~~n~l~~~~~~~~~~----~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
..+..+++|++|++++|.+.+. ....+ ..+..++.| .+|+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i--~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNM--SKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTC--CHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCcccc--CHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3457889999999999997766 33222 246788899 999999998654
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=4.7e-21 Score=180.65 Aligned_cols=245 Identities=23% Similarity=0.260 Sum_probs=176.7
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
++++.|++++|.++ .+|. .+++|++|++++|.+.. ++. .+++|++|++++|.++. +|. .+.+|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 67899999999887 3444 57889999999988773 333 56788888888888773 333 4566777777
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCC---C--------------CCCCCccEEEeeccccCCcCcccccC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSR---I--------------GNLSKLVNLGIGFSNLQGQILTEIGN 183 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~---~--------------~~~~~L~~L~l~~~~~~~~~~~~l~~ 183 (330)
++|.++. +|.. +++|++|++++|.+.+ ++.. + ..+++|+.|++++|.+.. ++. .
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---C
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---c
Confidence 7776663 3332 3566666666665542 2221 1 223788889998888764 222 3
Q ss_pred CCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEE
Q 037331 184 LQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGL 263 (330)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 263 (330)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+| ..+++|+.|++++|.+. .+|. .+++|+.|
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 578999999999998 4453 3578999999999998 676 25789999999999998 4554 56899999
Q ss_pred EccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCccccccccc----ceE-EEEeccccc
Q 037331 264 DFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSF----TLL-YLYFQLNNC 322 (330)
Q Consensus 264 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l----~~l-~l~l~~n~~ 322 (330)
++++|.+. .+|..|..+++|+.|++++|++++. .+..+..+... ..+ .+++++++.
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~~~~~~g~~~~~~~~~~~~ 327 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER--TLQALREITSAPGYSGPIIRFDMAGASA 327 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH--HHHHHHHHHHSTTCCSCEEECCSCCC--
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc--CHHHHHhcccccccCCCceeeecCCCcc
Confidence 99999999 7888899999999999999999877 55544443332 224 666665443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.8e-21 Score=165.87 Aligned_cols=193 Identities=22% Similarity=0.373 Sum_probs=110.3
Q ss_pred cCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccce
Q 037331 62 GNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLET 141 (330)
Q Consensus 62 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 141 (330)
..+++|++|+++++.+.. . ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-c-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 356667777777766653 2 246666777777777776663332 66667777777777766532 24566666666
Q ss_pred eecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcc
Q 037331 142 LRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQL 221 (330)
Q Consensus 142 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 221 (330)
|++++|.+.+ ++ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 6666666653 22 25556666666666665543221 5555666666666665553 222 55556666666666655
Q ss_pred cccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 222 SGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 222 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
+ .++. +. .+++|++|++++|++.+..+ +..+++|+.|++++|.+.
T Consensus 186 ~-~~~~-l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 S-DISP-LA-SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp C-CCGG-GG-GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred C-cChh-hc-CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 5 3333 22 45566666666665553322 455566666666666554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.1e-21 Score=159.65 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=124.2
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCc-cCccCchhhccCCCCcEEEecC-cccccccCccccCCCCCcEE
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENN-FHGHLLKELGQLHRLRVVSFAY-NKLSGSFSSWIGVLSKLQIL 118 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 118 (330)
.+++.|+++++.+++..+..|.++++|++|++++|. +.......|..+++|++|++++ |.+....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999997777789999999999999997 8766666899999999999998 99997777889999999999
Q ss_pred EcccCcCCCCCCccccCCcccc---eeecccc-cccccCCCCCCCCCCcc-EEEeeccccCCcCcccccCCCCCcEEEcc
Q 037331 119 RLQNNSFTGLIPNSLFNLSRLE---TLRAQFN-IIGGTIPSRIGNLSKLV-NLGIGFSNLQGQILTEIGNLQNLEYLVLG 193 (330)
Q Consensus 119 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 193 (330)
++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .+++++|.+.......+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 555 77777777 8888877 66644444455666666 6666655544222112222 344444444
Q ss_pred CCc-cCCCCcccccCC-CCCcEEEecCCccc
Q 037331 194 ENN-LSGFIPPTIFNI-STIRVLNLLGNQLS 222 (330)
Q Consensus 194 ~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~ 222 (330)
+|. ++...+..+..+ ++|+.|++++|.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 442 332222333333 44444444444443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.8e-20 Score=158.01 Aligned_cols=178 Identities=23% Similarity=0.299 Sum_probs=90.9
Q ss_pred CCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEee
Q 037331 90 RLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG 169 (330)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 169 (330)
..+.++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666666 4444332 466666666666665555556666666666666666654444445555555555555
Q ss_pred ccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccc
Q 037331 170 FSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGT 249 (330)
Q Consensus 170 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 249 (330)
+|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|+.|+|++|++.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 55554433334444555555555555554333333344445555555555444 33332222344455555555444433
Q ss_pred cchhhccCCCCcEEEccCCccc
Q 037331 250 IPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
.+..+..+++|+.|++++|.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 3334444444444444444443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.9e-20 Score=162.57 Aligned_cols=213 Identities=21% Similarity=0.351 Sum_probs=172.8
Q ss_pred ccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeeccc
Q 037331 67 LVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQF 146 (330)
Q Consensus 67 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 146 (330)
+..+.+..+.+.+. ..+..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 33334444444432 234568899999999999884 44 57889999999999999985544 88999999999999
Q ss_pred ccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCC
Q 037331 147 NIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLP 226 (330)
Q Consensus 147 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 226 (330)
|.+.+ + ..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+++. +. +..+++|+.|++++|.++ .++
T Consensus 95 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~ 167 (308)
T 1h6u_A 95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS-DLT 167 (308)
T ss_dssp CCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCG
T ss_pred CcCCC-c-hhhcCCCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC-CCh
Confidence 99874 3 3688899999999999998753 2488999999999999999844 33 788999999999999998 555
Q ss_pred cchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCC
Q 037331 227 STIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298 (330)
Q Consensus 227 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 298 (330)
. +. .+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+++..+
T Consensus 168 ~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 168 P-LA-NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred h-hc-CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeeecCC
Confidence 5 44 78999999999999985433 7889999999999999985 44 3889999999999999998863
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.4e-22 Score=181.79 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=191.8
Q ss_pred ceEEEEEccCCccccc----cCCcccCCCcccEEEccCCccC---ccCchh-------hccCCCCcEEEecCccccc---
Q 037331 41 QRVTALNLLDMGLRGT----IPGHLGNLSFLVSLDISENNFH---GHLLKE-------LGQLHRLRVVSFAYNKLSG--- 103 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~~~~~~~--- 103 (330)
++++.|++++|.+... ++..+..+++|++|++++|.+. ...+.. +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 7799999999998765 3345778999999999997543 233433 3688999999999999986
Q ss_pred -ccCccccCCCCCcEEEcccCcCCCCCCcc----ccCC---------cccceeeccccccc-ccCC---CCCCCCCCccE
Q 037331 104 -SFSSWIGVLSKLQILRLQNNSFTGLIPNS----LFNL---------SRLETLRAQFNIIG-GTIP---SRIGNLSKLVN 165 (330)
Q Consensus 104 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~l~-~~~~---~~~~~~~~L~~ 165 (330)
.++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.+. ..++ ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 36677888999999999999986433333 3344 89999999999886 2333 34567889999
Q ss_pred EEeeccccCCc----Ccc-cccCCCCCcEEEccCCccC----CCCcccccCCCCCcEEEecCCccccc----CCcchh-c
Q 037331 166 LGIGFSNLQGQ----ILT-EIGNLQNLEYLVLGENNLS----GFIPPTIFNISTIRVLNLLGNQLSGH----LPSTIG-H 231 (330)
Q Consensus 166 L~l~~~~~~~~----~~~-~l~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~-~ 231 (330)
|++++|.+... ..+ .+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 99999987632 223 6778999999999999985 35677888999999999999998744 344442 1
Q ss_pred CCCCccEEEccCccccc----ccchhh-ccCCCCcEEEccCCcccCCCC--cc-ccCCCCccEEEccc
Q 037331 232 SLPNIKYLTLGANNLFG----TIPNSI-TNASNLIGLDFTSNSFSGHIP--NT-FGNLRHLSVLSLMM 291 (330)
Q Consensus 232 ~~~~L~~L~L~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~~--~~-~~~l~~L~~l~l~~ 291 (330)
.+++|++|+|++|.+.+ .++..+ ..+++|+.|++++|.+.+..+ .. ...++.++..++..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 38999999999999987 367666 568999999999999986553 22 23345555555543
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.9e-19 Score=157.16 Aligned_cols=221 Identities=19% Similarity=0.153 Sum_probs=115.8
Q ss_pred CcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccC-ccccCCCCCcE-EEcccCcCCCCCCccccCCccccee
Q 037331 65 SFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFS-SWIGVLSKLQI-LRLQNNSFTGLIPNSLFNLSRLETL 142 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L 142 (330)
++++.|++++|.++.....+|.++++|++|++++|.+.+.++ ..|.+++++++ +.+.+|.+....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666666666654444456666666666666666543332 34555555543 3344455555555566666666666
Q ss_pred ecccccccccCCCCCCCCCCccEEEeecc-ccCCcCcccccCC-CCCcEEEccCCccCCCCcccccCCCCCcEEEecC-C
Q 037331 143 RAQFNIIGGTIPSRIGNLSKLVNLGIGFS-NLQGQILTEIGNL-QNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG-N 219 (330)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~ 219 (330)
++++|.+....+..+....++..+++.++ .+.......+..+ ..++.|++++|.++ .++.......+|+.+.+.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 66666665333333444445555555442 2222222233333 24556666666665 2333333445566666654 3
Q ss_pred cccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEccc
Q 037331 220 QLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMM 291 (330)
Q Consensus 220 ~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 291 (330)
.++ .+|...+..+++|+.|++++|+++. +|.. .+.+|+.|.+.++.-.+.+|. +..+++|+.+++.+
T Consensus 189 ~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccc-CCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 443 5665544456666666666666653 3321 234555555544433334443 55666666666654
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2.7e-22 Score=189.67 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCCCcEEEccCCccCCCCcccccC-CCCCcEEEec----CCcccccCC-----cchhcCCCCccEEEccCcc--cccccc
Q 037331 184 LQNLEYLVLGENNLSGFIPPTIFN-ISTIRVLNLL----GNQLSGHLP-----STIGHSLPNIKYLTLGANN--LFGTIP 251 (330)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~~~~~~~~~-----~~l~~~~~~L~~L~L~~n~--~~~~~~ 251 (330)
+++|++|+++.+.+++..+..+.. +++|+.|+++ .+.++ ..| ..+...+++|++|++++|. +.+...
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~-~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT-DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS-SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc-CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 455555555444444333333333 5566666664 33443 211 1112246677777776433 333333
Q ss_pred hhh-ccCCCCcEEEccCCcccC-CCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccccccC
Q 037331 252 NSI-TNASNLIGLDFTSNSFSG-HIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCNICG 326 (330)
Q Consensus 252 ~~~-~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~~~~ 326 (330)
..+ ..+++|+.|++++|.+.+ .++..+..+++|++|++++|++++. .+. .....++.| ++++++|+++..+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~--~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER--AIA--AAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH--HHH--HHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH--HHH--HHHHhcCccCeeECcCCcCCHHH
Confidence 333 347788888888887764 2344457788888888888887543 221 223567788 8899998887654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-19 Score=157.98 Aligned_cols=237 Identities=17% Similarity=0.134 Sum_probs=173.3
Q ss_pred EEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCC-CccccCCcccce-eeccc
Q 037331 69 SLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLI-PNSLFNLSRLET-LRAQF 146 (330)
Q Consensus 69 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~-L~l~~ 146 (330)
+++.++++++ .+|..+ .++++.|++++|.++...+.+|.++++|++|++++|.+.+.+ +..|.+++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455555554 334333 257999999999999666678999999999999999986544 456788888775 55567
Q ss_pred ccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccC-CccCCCCcccccCC-CCCcEEEecCCccccc
Q 037331 147 NIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGE-NNLSGFIPPTIFNI-STIRVLNLLGNQLSGH 224 (330)
Q Consensus 147 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 224 (330)
|.+....+..+..+++|+.+++++|.+.......+.....+..+++.+ +.+....+..+..+ ..++.|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 888866678889999999999999998765555555667788888876 44553334445554 46889999999998 7
Q ss_pred CCcchhcCCCCccEEEccC-cccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccC-ccCCCCCCCc
Q 037331 225 LPSTIGHSLPNIKYLTLGA-NNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN-NLTTESSSVD 302 (330)
Q Consensus 225 ~~~~l~~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~l~~~~~~~~ 302 (330)
++...+ ...+|+++.+.+ |.+....+..|..+++|+.|++++|++.. +|.. .+.+|+.|.+.++ .++.+|
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP---- 240 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP---- 240 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC----
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC----
Confidence 888777 567899999986 55654444567899999999999999984 5542 3456666666554 455542
Q ss_pred ccccccccceE-EEEeccc
Q 037331 303 RWSFLSSFTLL-YLYFQLN 320 (330)
Q Consensus 303 ~~~~l~~l~~l-~l~l~~n 320 (330)
.+..+++| .++++++
T Consensus 241 ---~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 ---TLEKLVALMEASLTYP 256 (350)
T ss_dssp ---CTTTCCSCCEEECSCH
T ss_pred ---CchhCcChhhCcCCCC
Confidence 34667777 7777654
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.9e-19 Score=146.20 Aligned_cols=183 Identities=22% Similarity=0.252 Sum_probs=128.3
Q ss_pred CCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCccccccc
Q 037331 26 YPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSF 105 (330)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 105 (330)
...|.|.++.|.. ++++ .+|..+ .++|+.|+++++.+.......|..+++|++|++++|.+....
T Consensus 4 ~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 3456777777653 3333 223322 346777888877777555556677778888888887777555
Q ss_pred CccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCC
Q 037331 106 SSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQ 185 (330)
Q Consensus 106 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 185 (330)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 55667778888888888877766556677778888888888877755555567778888888888877755555567788
Q ss_pred CCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchh
Q 037331 186 NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIG 230 (330)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 230 (330)
+|+.|++++|.+.. .++.|+.|++..|.+++.+|..++
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 88888888886652 355778888888888888887665
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.5e-19 Score=168.51 Aligned_cols=214 Identities=23% Similarity=0.282 Sum_probs=153.8
Q ss_pred cCCccchhcCCCcCCCCce-----eeeee-eeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchh
Q 037331 11 VLDYRSALANNWSIFYPIC-----SCVGI-SCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKE 84 (330)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 84 (330)
+.++..++.. |..+..+| .|.++ .|.. .+++.|+++++.+++ +|..+ .++|+.|++++|.+. .++
T Consensus 26 ~~~~~~~l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-- 96 (571)
T 3cvr_A 26 YADYFSAWDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-- 96 (571)
T ss_dssp HHHHHHHHHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--
T ss_pred chhHHHHHHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--
Confidence 3455556664 88887888 57777 5641 478999999999886 66655 378999999999887 444
Q ss_pred hccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCcc
Q 037331 85 LGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLV 164 (330)
Q Consensus 85 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 164 (330)
..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. .+++|+
T Consensus 97 -~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~ 163 (571)
T 3cvr_A 97 -ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLE 163 (571)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred -cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcC
Confidence 457889999999998885 555 544 89999999998885 444 57788888888888874 554 467788
Q ss_pred EEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCC-------cEEEecCCcccccCCcchhcCCCCcc
Q 037331 165 NLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTI-------RVLNLLGNQLSGHLPSTIGHSLPNIK 237 (330)
Q Consensus 165 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~l~~~~~~L~ 237 (330)
.|++++|.+.. ++. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..++ .+++|+
T Consensus 164 ~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~ 233 (571)
T 3cvr_A 164 VLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTC 233 (571)
T ss_dssp EEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTE
T ss_pred EEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCC
Confidence 88888887764 433 44 77888888888777 4554 433 55 77777777777 6777766 477777
Q ss_pred EEEccCcccccccchhhcc
Q 037331 238 YLTLGANNLFGTIPNSITN 256 (330)
Q Consensus 238 ~L~L~~n~~~~~~~~~~~~ 256 (330)
.|+|++|.+.+..|..+..
T Consensus 234 ~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEECCSSSCCHHHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHHHH
Confidence 7777777777666665544
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.3e-18 Score=162.18 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=115.8
Q ss_pred CCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEee
Q 037331 90 RLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIG 169 (330)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 169 (330)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666653 44333 255666666666665 333 234566666666666653 444 333 66666666
Q ss_pred ccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccc
Q 037331 170 FSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGT 249 (330)
Q Consensus 170 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 249 (330)
+|.+.. ++. .+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. +. ++|+.|+|++|.+. .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECcCCCCC-c
Confidence 666554 322 45667777777777663 443 4566777777777776 4555 22 66777777777776 4
Q ss_pred cchhhccCCCC-------cEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCccccccccc-----ceEEEEe
Q 037331 250 IPNSITNASNL-------IGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSF-----TLLYLYF 317 (330)
Q Consensus 250 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l-----~~l~l~l 317 (330)
+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|++++. .|..+..+... +.+.+++
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~~~~~~~~~~~~l 268 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR--IRESLSQQTAQPDYHGPRIYFSM 268 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH--HHHHHHHHHHSCC---CEEECCC
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc--CHHHHHHhhcCccccCCeeEEee
Confidence 444 332 55 77777777777 4666666677777777777777766 55555444332 1124555
Q ss_pred cccccc
Q 037331 318 QLNNCN 323 (330)
Q Consensus 318 ~~n~~~ 323 (330)
+++++.
T Consensus 269 ~~~~~~ 274 (571)
T 3cvr_A 269 SDGQQN 274 (571)
T ss_dssp ------
T ss_pred cccccc
Confidence 555443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.7e-18 Score=140.39 Aligned_cols=163 Identities=22% Similarity=0.244 Sum_probs=87.3
Q ss_pred CCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEc
Q 037331 113 SKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVL 192 (330)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 192 (330)
+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554433334445555555555555544332333444555555555555544333333455566666666
Q ss_pred cCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccC
Q 037331 193 GENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 193 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 272 (330)
++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+. ..++.|+.|++..|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 666665444444555666666666666665 444443335666666666666543 234556666666666666
Q ss_pred CCCccccCCCC
Q 037331 273 HIPNTFGNLRH 283 (330)
Q Consensus 273 ~~~~~~~~l~~ 283 (330)
.+|..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 66665555443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.9e-18 Score=148.65 Aligned_cols=189 Identities=20% Similarity=0.302 Sum_probs=121.5
Q ss_pred ccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeeccc
Q 037331 67 LVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQF 146 (330)
Q Consensus 67 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 146 (330)
+..+.+....+... ..+..+++|+.|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 33344444444321 2245677888888888887733 3 36778888888888888875433 77788888888888
Q ss_pred ccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCC
Q 037331 147 NIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLP 226 (330)
Q Consensus 147 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 226 (330)
|.+.+ ++ .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+. .++
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~ 172 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIV 172 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cch
Confidence 77763 22 366677777777777766542 3466667777777777766633 45566677777777777666 333
Q ss_pred cchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccC
Q 037331 227 STIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 227 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 272 (330)
. +. .+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus 173 ~-l~-~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P-LA-GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GT-TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h-hc-CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 33 56677777777776663 33 25666677777777766653
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=8.3e-18 Score=138.68 Aligned_cols=136 Identities=19% Similarity=0.301 Sum_probs=88.4
Q ss_pred CCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEE
Q 037331 161 SKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLT 240 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 240 (330)
++++.|++++|.+....+..+..+++|+.|++++|.++...|..+..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 34555555555555444445556666666666666666555666666677777777777776 56655544667777777
Q ss_pred ccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 241 LGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 241 L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
|++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.-.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 777777766666666777777777777777755555667777777777777776543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.6e-18 Score=144.61 Aligned_cols=186 Identities=18% Similarity=0.314 Sum_probs=151.9
Q ss_pred EecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccC
Q 037331 95 SFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQ 174 (330)
Q Consensus 95 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (330)
.+....+.+.. .+..+++|+.|++++|.+... +.+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence 34444444222 235688999999999998744 3478899999999999998854 33 889999999999999887
Q ss_pred CcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhh
Q 037331 175 GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSI 254 (330)
Q Consensus 175 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 254 (330)
. .+.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.++ .+ ..+. .+++|+.|++++|.+.+..+ +
T Consensus 104 ~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~-~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 104 D--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp C--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGG-GCTTCSEEECCSSCCCCCGG--G
T ss_pred C--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhc-cCCCCCEEEccCCccccchh--h
Confidence 5 3458899999999999999984 3 46788999999999999998 45 4444 78999999999999986544 7
Q ss_pred ccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 255 TNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 255 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
..+++|+.|++++|.+.+ ++. +..+++|+.|++++|+++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred cCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 889999999999999984 544 88999999999999999876
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.5e-17 Score=137.96 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=119.7
Q ss_pred CcCCCCceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCccc
Q 037331 22 WSIFYPICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKL 101 (330)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 101 (330)
|..+...|.|.++.|... .++ .+|..+ .++|+.|++++|.+....+..|..+++|++|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCC------------CcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 667889999998888632 222 333333 26778888888877766667777788888888888887
Q ss_pred ccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccc
Q 037331 102 SGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEI 181 (330)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 181 (330)
....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.......+
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 7555566677888888888888877666666777888888888888777 667777778888888888887775555567
Q ss_pred cCCCCCcEEEccCCccCC
Q 037331 182 GNLQNLEYLVLGENNLSG 199 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~ 199 (330)
..+++|+.|++++|.+..
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 778888888888887764
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=4.5e-20 Score=174.39 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=34.5
Q ss_pred cCCCCcEEEecCcccccc----cCccccCCCCCcEEEcccCcCCC----CCCccccCCcccceeecccccccccCCCCCC
Q 037331 87 QLHRLRVVSFAYNKLSGS----FSSWIGVLSKLQILRLQNNSFTG----LIPNSLFNLSRLETLRAQFNIIGGTIPSRIG 158 (330)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 158 (330)
.+++|++|++++|.+.+. ++..+..+++|+.|+++++.+.+ .++..+..+++|++|+++++.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344555555555444322 11122334455555555544431 112223345555555555554432 223333
Q ss_pred CCCCccEEEee
Q 037331 159 NLSKLVNLGIG 169 (330)
Q Consensus 159 ~~~~L~~L~l~ 169 (330)
.+++|+.+.+.
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 34444444443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.9e-17 Score=155.76 Aligned_cols=193 Identities=21% Similarity=0.295 Sum_probs=143.5
Q ss_pred CCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceee
Q 037331 64 LSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLR 143 (330)
Q Consensus 64 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 143 (330)
+.++..+.+..+.+... ..+..+++|+.|+++++.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 33455555655555432 235677889999999998873 33 47889999999999998885544 78889999999
Q ss_pred cccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccc
Q 037331 144 AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSG 223 (330)
Q Consensus 144 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 223 (330)
+++|.+.+ + +.+..+++|+.|++++|.+... +.+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~- 166 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS- 166 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-
Confidence 99988873 3 3677888888888888887642 4577788888888888888743 56777888888888888887
Q ss_pred cCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC
Q 037331 224 HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH 273 (330)
Q Consensus 224 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (330)
.+++ +. .+++|+.|+|++|++.+. + .+..+++|+.|+|++|.+.+.
T Consensus 167 ~~~~-l~-~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP-LA-GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG-GT-TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred Cchh-hc-cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 3433 33 678888888888888743 3 467788888888888887753
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.4e-19 Score=171.13 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=77.9
Q ss_pred CCCCcEEEccCCccCCCCccccc-CCCCCcEEEec--C----CcccccCCc-----chhcCCCCccEEEccCcccccccc
Q 037331 184 LQNLEYLVLGENNLSGFIPPTIF-NISTIRVLNLL--G----NQLSGHLPS-----TIGHSLPNIKYLTLGANNLFGTIP 251 (330)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~~~~~-----~l~~~~~~L~~L~L~~n~~~~~~~ 251 (330)
+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++ ..|. .+...+++|++|++++ .+.+...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 44445554444444332222232 35667777776 2 2333 1111 1122567777777766 4444444
Q ss_pred hhhcc-CCCCcEEEccCCcccCCCCccc-cCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 252 NSITN-ASNLIGLDFTSNSFSGHIPNTF-GNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 252 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
..+.. +++|+.|++++|.+.+.....+ ..+++|++|++++|++++. .+ ......+++| .+++++|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~--~~--~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK--AL--LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH--HH--HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH--HH--HHHHHhCCCCCEEeeeCCCCC
Confidence 44443 7888888888888765443333 5688899999999988433 22 1234567888 8899988874
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=8.4e-17 Score=133.49 Aligned_cols=135 Identities=25% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEE
Q 037331 161 SKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLT 240 (330)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 240 (330)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEe
Confidence 44555555555554444444555555666666666555333344455666666666666665 44444333566666666
Q ss_pred ccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 241 LGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 241 L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+++|.+. .+|..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++...
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6666665 4555556666666666666666644444566666666666666666544
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=134.15 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=64.7
Q ss_pred ccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCC
Q 037331 181 IGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNL 260 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L 260 (330)
+..+++|+.|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|+|++|.+.+..+..+..+++|
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 344555555555555555444445555555666666666555 3333333355666666666666655555555556666
Q ss_pred cEEEccCCcccCCCCccccCCCCccEEEcccCccCC
Q 037331 261 IGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTT 296 (330)
Q Consensus 261 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 296 (330)
+.|++++|.+.+..|..|..+++|++|++++|++..
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666666666665445556666666666666666553
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=4.4e-17 Score=131.96 Aligned_cols=152 Identities=15% Similarity=0.254 Sum_probs=101.7
Q ss_pred CCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCcc
Q 037331 158 GNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK 237 (330)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 237 (330)
..+++|+.++++++.+. .++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhc-CCCCCC
Confidence 34556677777766665 222 4666777777777777554 2 23566677777777777777654555555 677788
Q ss_pred EEEccCcccccccchhhccCCCCcEEEccCCc-ccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EE
Q 037331 238 YLTLGANNLFGTIPNSITNASNLIGLDFTSNS-FSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YL 315 (330)
Q Consensus 238 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l 315 (330)
.|++++|.+.+..+..+..+++|+.|++++|. +. .++ .+..+++|++|++++|++++.+ .+..+++| .+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-------~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-------GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-------TGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-------HhccCCCCCEE
Confidence 88888887776666667777788888888876 44 454 4677778888888888777652 24566777 77
Q ss_pred Eecccccc
Q 037331 316 YFQLNNCN 323 (330)
Q Consensus 316 ~l~~n~~~ 323 (330)
++++|+|+
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 88887764
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=147.35 Aligned_cols=176 Identities=21% Similarity=0.189 Sum_probs=85.9
Q ss_pred cEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCC-CCCCccEEEeeccccCCcCcccccCCCCCcEEEccC
Q 037331 116 QILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIG-NLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGE 194 (330)
Q Consensus 116 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 194 (330)
+.++++++.+. .+|..+. ..++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46666666665 3343322 2356666666666544444444 555556665555555544444455555555555555
Q ss_pred CccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhh---ccCCCCcEEEccCCccc
Q 037331 195 NNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSI---TNASNLIGLDFTSNSFS 271 (330)
Q Consensus 195 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~ 271 (330)
|.++...+..+..+++|+.|++++|.+.+..+..+. .+++|+.|+|++|.+.+..+..+ ..+++|+.|+|++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555533334444555555555555555422222222 45555555555555543222222 23455555555555554
Q ss_pred CCCCccccCCCC--ccEEEcccCccC
Q 037331 272 GHIPNTFGNLRH--LSVLSLMMNNLT 295 (330)
Q Consensus 272 ~~~~~~~~~l~~--L~~l~l~~n~l~ 295 (330)
+..+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 322233444443 244555555543
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3e-17 Score=132.99 Aligned_cols=152 Identities=14% Similarity=0.223 Sum_probs=94.0
Q ss_pred CcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEE
Q 037331 136 LSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215 (330)
Q Consensus 136 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 215 (330)
+++|++|+++++.+. .++ .+..+++|+.|++++|.+. ....+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 223 3444555555555555332 123456667777777777776655556666777777777
Q ss_pred ecCCcccccCCcchhcCCCCccEEEccCcc-cccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCcc
Q 037331 216 LLGNQLSGHLPSTIGHSLPNIKYLTLGANN-LFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNL 294 (330)
Q Consensus 216 l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l 294 (330)
+++|.+++..+..+. .+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 777777644555554 67778888888876 44 444 46777888888888887774 44 567788888888888876
Q ss_pred CC
Q 037331 295 TT 296 (330)
Q Consensus 295 ~~ 296 (330)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.4e-17 Score=146.22 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=137.7
Q ss_pred cEEEccCCccCccCchhhccCCCCcEEEecCcccccccCcccc-CCCCCcEEEcccCcCCCCCCccccCCcccceeeccc
Q 037331 68 VSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIG-VLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQF 146 (330)
Q Consensus 68 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 146 (330)
++++++++.+.. ++..+. +.++.|++++|.++...+..+. .+.+|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888887763 444332 4588899999999877777776 889999999999999877777888999999999999
Q ss_pred ccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccc---cCCCCCcEEEecCCcccc
Q 037331 147 NIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTI---FNISTIRVLNLLGNQLSG 223 (330)
Q Consensus 147 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 223 (330)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 98886666678888999999999988887667778888999999999998885433333 46888999999999887
Q ss_pred cCCcchhcCCCC--ccEEEccCccccc
Q 037331 224 HLPSTIGHSLPN--IKYLTLGANNLFG 248 (330)
Q Consensus 224 ~~~~~l~~~~~~--L~~L~L~~n~~~~ 248 (330)
.++...+..++. ++.|+|.+|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 666544435665 4788999888763
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.5e-17 Score=154.05 Aligned_cols=190 Identities=22% Similarity=0.315 Sum_probs=153.6
Q ss_pred EEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEccc
Q 037331 43 VTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQN 122 (330)
Q Consensus 43 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 122 (330)
+..+.+....+.+..+ +..+++|+.|+++++.+... ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445555555554432 56788999999999988743 358889999999999999985544 78999999999999
Q ss_pred CcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCc
Q 037331 123 NSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIP 202 (330)
Q Consensus 123 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 202 (330)
|.+.+. +.+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 998743 368899999999999999874 3 4578899999999999988754 568889999999999999985544
Q ss_pred ccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccc
Q 037331 203 PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGT 249 (330)
Q Consensus 203 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 249 (330)
+..+++|+.|++++|.+. .++ .+. .+++|+.|+|++|.+.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~-~l~-~l~-~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHIS-DLR-ALA-GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCC-BCG-GGT-TCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEccCCcCcCC
Confidence 788999999999999997 554 444 789999999999988754
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.4e-16 Score=131.31 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=97.2
Q ss_pred EEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCc
Q 037331 45 ALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNS 124 (330)
Q Consensus 45 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 124 (330)
.++..+++++ .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4566666665 3454443 578888888888776656677777888888888888776667777777888888888887
Q ss_pred CCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCcc
Q 037331 125 FTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNL 197 (330)
Q Consensus 125 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 197 (330)
+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7755555566677777777777766655455555555555555555555444333444455555555555444
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1e-19 Score=170.19 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=100.1
Q ss_pred CCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEc
Q 037331 186 NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDF 265 (330)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 265 (330)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 58889999999884 565 888999999999999998 8888777 78999999999999985 56 6888999999999
Q ss_pred cCCcccCCC-CccccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEE
Q 037331 266 TSNSFSGHI-PNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLY 316 (330)
Q Consensus 266 ~~n~l~~~~-~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~ 316 (330)
++|.+.+.. |..|+.+++|+.|++++|++++.+... ......++.| .|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~--~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ--ERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT--THHHHHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH--HHHHHHCcccCccC
Confidence 999998665 888999999999999999998884433 2223345556 554
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=4.4e-19 Score=167.61 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=143.9
Q ss_pred ceEEEEEccCCccccccCCccc-CCCcccEEEccCC-ccCcc-CchhhccCCCCcEEEecCcccccccCccc----cCCC
Q 037331 41 QRVTALNLLDMGLRGTIPGHLG-NLSFLVSLDISEN-NFHGH-LLKELGQLHRLRVVSFAYNKLSGSFSSWI----GVLS 113 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~ 113 (330)
+++++|+++++.+++..+..+. .+++|++|++.+| .+... ....+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 6788888888877665544443 5778888888877 44322 22333467788888888777654333222 2455
Q ss_pred CCcEEEcccCc--CCC-CCCccccCCcccceeecccccc-----------------------------------------
Q 037331 114 KLQILRLQNNS--FTG-LIPNSLFNLSRLETLRAQFNII----------------------------------------- 149 (330)
Q Consensus 114 ~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~~l----------------------------------------- 149 (330)
+|+.|+++++. +.. .+...+..+++|++|++++|..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777664 110 0111112345555555554410
Q ss_pred ---------c----ccCCCCCCCCCCccEEEeeccccCCcCc-ccccCCCCCcEEEccCCccCCC-CcccccCCCCCcEE
Q 037331 150 ---------G----GTIPSRIGNLSKLVNLGIGFSNLQGQIL-TEIGNLQNLEYLVLGENNLSGF-IPPTIFNISTIRVL 214 (330)
Q Consensus 150 ---------~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L 214 (330)
. ..++..+..+++|+.|++++|.+..... ..+..+++|++|++++| +.+. ++.....+++|+.|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 0 0011111135677777777766442211 12345566666666655 2211 11111124445555
Q ss_pred Ee----------------------------------cCCcccccCCcchhcCCCCccEEEcc--C----ccccc-----c
Q 037331 215 NL----------------------------------LGNQLSGHLPSTIGHSLPNIKYLTLG--A----NNLFG-----T 249 (330)
Q Consensus 215 ~l----------------------------------~~~~~~~~~~~~l~~~~~~L~~L~L~--~----n~~~~-----~ 249 (330)
++ .++.+++.....+...+++|++|+++ + +.+++ .
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 44 44444322223333235666666666 2 23321 1
Q ss_pred cchhhccCCCCcEEEccCCcccCCCCccccC-CCCccEEEcccCccCCCCCCCcccccc-cccceE-EEEeccccccc
Q 037331 250 IPNSITNASNLIGLDFTSNSFSGHIPNTFGN-LRHLSVLSLMMNNLTTESSSVDRWSFL-SSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~l~l~~n~l~~~~~~~~~~~~l-~~l~~l-~l~l~~n~~~~ 324 (330)
++..+..+++|+.|++++ .+.+.....+.. +++|++|++++|.+++. .+ ..+ ..+++| .+++++|+++.
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~--~~---~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL--GM---HHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH--HH---HHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH--HH---HHHHhcCCCcCEEECcCCCCcH
Confidence 112234556666666655 333333333333 77888888888877544 22 222 557888 88999998753
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=3.5e-16 Score=128.94 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=104.3
Q ss_pred EEEccCCccccccCCcccCCCcccEEEccCCccCccCc-hhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccC
Q 037331 45 ALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLL-KELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNN 123 (330)
Q Consensus 45 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 123 (330)
.++++++.++. +|..+ .+.++.|++++|.+....+ ..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 67787887764 55544 2456788888888876533 45778888888888888888666667888888888888888
Q ss_pred cCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccC
Q 037331 124 SFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 124 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 198 (330)
.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 887666666777777888887777776555555666666666666665555444445555555555555555443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.6e-17 Score=138.58 Aligned_cols=170 Identities=19% Similarity=0.278 Sum_probs=120.1
Q ss_pred CCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEE
Q 037331 88 LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLG 167 (330)
Q Consensus 88 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 167 (330)
+.++..+++.++.+++.. .+..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.+. +. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 445666677777776333 46678888899998888873 33 677888888888888887743 33 77788888888
Q ss_pred eeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccc
Q 037331 168 IGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLF 247 (330)
Q Consensus 168 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ 247 (330)
+++|.+.... .+.. ++|+.|++++|.+++ + ..+..+++|+.|++++|.++ .++ .+. .+++|+.|++++|++.
T Consensus 92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~-~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK-SIV-MLG-FLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSCCT--TCCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC-BCG-GGG-GCTTCCEEECTTSCCC
T ss_pred CCCCccCCcC--cccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC-CCh-HHc-cCCCCCEEECCCCcCc
Confidence 8888776422 2333 778888888887764 3 34667778888888888776 444 333 5777888888888777
Q ss_pred cccchhhccCCCCcEEEccCCcccCC
Q 037331 248 GTIPNSITNASNLIGLDFTSNSFSGH 273 (330)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (330)
+. ..+..+++|+.|++++|.+...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 54 4566777888888888877643
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=7e-17 Score=136.80 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=140.0
Q ss_pred CCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEE
Q 037331 111 VLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYL 190 (330)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 190 (330)
.+.++..++++++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+....+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4566777788888887443 5778899999999999887 455 67889999999999998875443 8899999999
Q ss_pred EccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcc
Q 037331 191 VLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSF 270 (330)
Q Consensus 191 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 270 (330)
++++|.+++ ++. +.. ++|+.|++++|.++ .++ .+. .+++|+.|++++|++.+. + .+..+++|+.|++++|.+
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 999999984 333 223 89999999999998 554 344 789999999999999854 4 578899999999999999
Q ss_pred cCCCCccccCCCCccEEEcccCccCCC
Q 037331 271 SGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 271 ~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
.+. ..+..+++|+.|++++|+++..
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 854 6688999999999999998877
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=7.3e-17 Score=141.31 Aligned_cols=196 Identities=12% Similarity=0.070 Sum_probs=118.4
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccc----cCCcCcccccCCCCC
Q 037331 112 LSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSN----LQGQILTEIGNLQNL 187 (330)
Q Consensus 112 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~~L 187 (330)
+.+|+.+++.+ .+....+.+|..+++|+.|++..+.+....+..|..+.++..+...... ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 5554555566666666666666665554444555555544444332211 011111122233333
Q ss_pred c--------------------------EEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEc
Q 037331 188 E--------------------------YLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTL 241 (330)
Q Consensus 188 ~--------------------------~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L 241 (330)
+ .+.+.+.-...........+++|+.+++.+|.++ .++...+..|++|+++.|
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence 3 2222211000000000013678899999988887 788877778888999999
Q ss_pred cCcccccccchhhccCCCCc-EEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE
Q 037331 242 GANNLFGTIPNSITNASNLI-GLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL 313 (330)
Q Consensus 242 ~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l 313 (330)
++| +......+|..+++|+ .+++.+ .+....+.+|..|++|+.+++++|.++.+ ....|..+.++..+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I--~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL--GDELFGNGVPSKLI 326 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE--CTTTTCTTCCCCEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc--chhhhcCCcchhhh
Confidence 887 6656677888888898 888887 56645567888899999999888888888 44446655555554
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.5e-17 Score=160.04 Aligned_cols=160 Identities=21% Similarity=0.212 Sum_probs=47.8
Q ss_pred CceeeeeeeeCCCCceEEEEEccCCccccccCCcccCCCcccEEEccCCccCc---------cCchhhccCCCCcEEEec
Q 037331 27 PICSCVGISCGSRHQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHG---------HLLKELGQLHRLRVVSFA 97 (330)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~L~l~ 97 (330)
....|.+.... .++++.|++.++.+... +..+ ++.++|+.+.+.. ..+..+..++.|+.|+|+
T Consensus 161 ~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 161 PSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred ccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECC
Confidence 34555544332 26788899988877642 3322 3333333333221 223334444555555555
Q ss_pred CcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcC
Q 037331 98 YNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQI 177 (330)
Q Consensus 98 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 177 (330)
+|.+. .++..+..+++|++|++++|.++ .+|..|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 55444 33333334445555555554444 34444444444444444444444 33444444444444444444333 22
Q ss_pred cccccCCCCCcEEEccCCccC
Q 037331 178 LTEIGNLQNLEYLVLGENNLS 198 (330)
Q Consensus 178 ~~~l~~~~~L~~L~l~~~~~~ 198 (330)
+..+..+++|+.|+|++|.++
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCC
T ss_pred ChhhhcCCCccEEeCCCCccC
Confidence 333333444444444444433
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.8e-16 Score=135.59 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=148.6
Q ss_pred chhhcc--------CCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccc----
Q 037331 82 LKELGQ--------LHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNII---- 149 (330)
Q Consensus 82 ~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l---- 149 (330)
..+|.. +++|+.+.+.. .++.+...+|..+.+|+.+++.++.+....+..|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 345667 88999999988 77766777888899999999998888767777888877777776654221
Q ss_pred cccCCCCCCCCCCcc--------------------------EEEeeccccCCcCcccc-cCCCCCcEEEccCCccCCCCc
Q 037331 150 GGTIPSRIGNLSKLV--------------------------NLGIGFSNLQGQILTEI-GNLQNLEYLVLGENNLSGFIP 202 (330)
Q Consensus 150 ~~~~~~~~~~~~~L~--------------------------~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 202 (330)
.......+..+..|+ .+.+.+.-.. .....+ ..+++|+.+++.+|.++....
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 111122333444444 2222221100 000011 137899999999998886666
Q ss_pred ccccCCCCCcEEEecCCcccccCCcchhcCCCCcc-EEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCC
Q 037331 203 PTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIK-YLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNL 281 (330)
Q Consensus 203 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 281 (330)
.++.++++|+.+++..+ +. .++...|.++++|+ .+.+.+ .+....+.+|..|++|+.+++++|.+....+.+|..+
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred hhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 78889999999999998 66 78887777999999 999998 6776778899999999999999999986667799999
Q ss_pred CCccEEEc
Q 037331 282 RHLSVLSL 289 (330)
Q Consensus 282 ~~L~~l~l 289 (330)
++|+.+..
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 99998853
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.8e-18 Score=161.78 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=142.3
Q ss_pred ccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCc-------------CCCCCCccccCCcccceee-cccc----
Q 037331 86 GQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNS-------------FTGLIPNSLFNLSRLETLR-AQFN---- 147 (330)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~---- 147 (330)
..+++|+.|++++|.+. .+|..+..+.+|+.|+++++. ..+..|..+..+++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666665 556666666666666655442 2334555666667777776 4433
Q ss_pred ---------cccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecC
Q 037331 148 ---------IIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG 218 (330)
Q Consensus 148 ---------~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 218 (330)
.+. .++ ...|+.|++++|.+.. ++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 425 L~~l~l~~n~i~-~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVL-KME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHH-HHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhccccc-ccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 222 111 1258899999998875 444 889999999999999998 7888999999999999999
Q ss_pred CcccccCCcchhcCCCCccEEEccCccccccc-chhhccCCCCcEEEccCCcccCCCCc---cccCCCCccEEEc
Q 037331 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTI-PNSITNASNLIGLDFTSNSFSGHIPN---TFGNLRHLSVLSL 289 (330)
Q Consensus 219 ~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l 289 (330)
|.++ .+| .+. .+++|+.|+|++|.+.+.. |..+..+++|+.|++++|.+.+..+. .+..+++|+.|++
T Consensus 496 N~l~-~lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCC-CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-CCc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998 577 555 7999999999999999776 88899999999999999999865443 2345889999864
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.4e-15 Score=119.85 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCccEEEeeccccC-CcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEE
Q 037331 161 SKLVNLGIGFSNLQ-GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYL 239 (330)
Q Consensus 161 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 239 (330)
++|+.|++++|.+. ..++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+.+|..+. .+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCEE
Confidence 45566666665554 23344445555566666666555532 4445555566666666655533333332 35556666
Q ss_pred EccCccccccc-chhhccCCCCcEEEccCCcccCCCC---ccccCCCCccEEEcccCccCCC
Q 037331 240 TLGANNLFGTI-PNSITNASNLIGLDFTSNSFSGHIP---NTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 240 ~L~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
++++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 66655555321 1344555555555555555553222 2455555555555555555444
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=5.5e-14 Score=125.95 Aligned_cols=265 Identities=8% Similarity=0.060 Sum_probs=184.4
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
..++.+.+.. .++..-..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+...+|..+.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3445555543 2343444567775 7999998765 554556677774 688888886 566566678888999999999
Q ss_pred ccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCC
Q 037331 121 QNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGF 200 (330)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 200 (330)
..+.++......|. +.+|+.+.+..+ +.......|..+++|+.+.+..+ +.......|.. .+|+.+.+.. .++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEE
Confidence 98888755555555 678898888754 54455677888889999988753 34344455655 6888888844 34444
Q ss_pred CcccccCCCCCcEEEecCCccc----ccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCc
Q 037331 201 IPPTIFNISTIRVLNLLGNQLS----GHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPN 276 (330)
Q Consensus 201 ~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 276 (330)
...++.++++|+.+.+.++.+. ..++...+.+|++|+.+.|.+ .+......+|..|++|+.+.|..+ +......
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 5677888899999999887653 136666666889999999985 466566778888899999999655 5545566
Q ss_pred cccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 277 TFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 277 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
+|..+ +|+.+++.+|.+..+ ....|..++ ..+ .+++-.+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l--~~~~F~~~~--~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQV--FEKVWYGFP--DDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBC--CCSSCCCSC--TTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCccc--ccccccCCC--CCccEEEeCHHHH
Confidence 88888 999999998877766 333343332 245 666665554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=7.2e-15 Score=115.71 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=88.6
Q ss_pred cccceeeccccccc-ccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEE
Q 037331 137 SRLETLRAQFNIIG-GTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215 (330)
Q Consensus 137 ~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 215 (330)
++|++|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555544 34444455556666666666665533 4566677777777777777755666666677888888
Q ss_pred ecCCcccccCC--cchhcCCCCccEEEccCcccccccc---hhhccCCCCcEEEccCCcccCCCCc
Q 037331 216 LLGNQLSGHLP--STIGHSLPNIKYLTLGANNLFGTIP---NSITNASNLIGLDFTSNSFSGHIPN 276 (330)
Q Consensus 216 l~~~~~~~~~~--~~l~~~~~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~ 276 (330)
+++|.++ .++ ..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 8888776 444 3333 67888888888888875444 36777888888888888776 3444
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=6.2e-15 Score=118.75 Aligned_cols=130 Identities=23% Similarity=0.305 Sum_probs=107.0
Q ss_pred cEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcc-cccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEcc
Q 037331 164 VNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPP-TIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLG 242 (330)
Q Consensus 164 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~ 242 (330)
+.++++++++. .++..+. .++++|++++|.+....+. .+..+++|++|++++|.+++..|..+. .+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECC
Confidence 67888888775 4444442 3899999999998855543 477899999999999999855555555 78999999999
Q ss_pred CcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 243 ANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 243 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+|++.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999987777788899999999999999987788899999999999999998866
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=8.5e-14 Score=124.72 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=116.7
Q ss_pred CCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceee
Q 037331 64 LSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLR 143 (330)
Q Consensus 64 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 143 (330)
+..++.+.+.+. +......+|..+ +|+.+.+..+ +..+...+|.+ .+|+.+.+.. .+.......|..+.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 345555555432 222333444443 4666665544 33344444444 3466666554 34434445555666666666
Q ss_pred cccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccc
Q 037331 144 AQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSG 223 (330)
Q Consensus 144 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 223 (330)
+..+.+.......|. +.+|+.+.+.. .+.......|..+++|+.+.+..+ ++.....++.+ ..|+.+.+.. .+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT- 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-
Confidence 655555422222232 45566665543 233333444555666666666543 22222333333 4566666632 233
Q ss_pred cCCcchhcCCCCccEEEccCcccc-----cccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCC
Q 037331 224 HLPSTIGHSLPNIKYLTLGANNLF-----GTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298 (330)
Q Consensus 224 ~~~~~l~~~~~~L~~L~L~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 298 (330)
.++...+..|++|+++.+.++.+. .....+|..|++|+.+.+.+ .+......+|..+.+|+.+++.++ ++.+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I- 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI- 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE-
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE-
Confidence 444444445666666666555432 23444555566666666653 243333345556666666666433 3333
Q ss_pred CCCcccccccccceE-EEEecccccccc
Q 037331 299 SSVDRWSFLSSFTLL-YLYFQLNNCNIC 325 (330)
Q Consensus 299 ~~~~~~~~l~~l~~l-~l~l~~n~~~~~ 325 (330)
....| ..+ .| .+++.+|.+..+
T Consensus 338 -~~~aF---~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 338 -NFSAF---NNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp -CTTSS---SSS-CCCEEEECCSSCCBC
T ss_pred -cHHhC---CCC-CCCEEEEcCCCCccc
Confidence 22112 233 45 555555554443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=116.05 Aligned_cols=129 Identities=21% Similarity=0.268 Sum_probs=95.1
Q ss_pred cEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccC
Q 037331 164 VNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGA 243 (330)
Q Consensus 164 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 243 (330)
+.++++++++. .++..+ .+.|++|++++|.++ .+|..+..+++|+.|++++|.++ .++...+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 45667666655 333333 357888888888887 56677778888888888888887 55544444778888888888
Q ss_pred cccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 244 NNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 244 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|++.-.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 888876677778888888888888888755555677888888888888887654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.9e-14 Score=115.94 Aligned_cols=131 Identities=24% Similarity=0.282 Sum_probs=110.4
Q ss_pred ceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcc-cccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecC
Q 037331 140 ETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILT-EIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLG 218 (330)
Q Consensus 140 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 218 (330)
++++++++.+. .+|..+.. +++.|++++|.+....+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 66765543 899999999998765543 478899999999999999987788999999999999999
Q ss_pred CcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCC
Q 037331 219 NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHI 274 (330)
Q Consensus 219 ~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 274 (330)
|.++ .++...+..+++|++|+|++|++.+..|..+..+++|+.|++++|.+....
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9998 444443337899999999999999888888999999999999999987543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=6.1e-15 Score=113.71 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=51.9
Q ss_pred CccEEEeeccccC-CcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEE
Q 037331 162 KLVNLGIGFSNLQ-GQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLT 240 (330)
Q Consensus 162 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 240 (330)
+++.|++++|.+. ...+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+. .+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEEE
Confidence 3344444444333 22233333444444444444444322 3333444444444444444422332222 344444444
Q ss_pred ccCcccccc-cchhhccCCCCcEEEccCCcccCCCC---ccccCCCCccEEEc
Q 037331 241 LGANNLFGT-IPNSITNASNLIGLDFTSNSFSGHIP---NTFGNLRHLSVLSL 289 (330)
Q Consensus 241 L~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l 289 (330)
+++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 444444431 12334444455555555554443222 23444445554444
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.8e-14 Score=111.00 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=90.6
Q ss_pred cccceeeccccccc-ccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEE
Q 037331 137 SRLETLRAQFNIIG-GTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLN 215 (330)
Q Consensus 137 ~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 215 (330)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555566666777777777666544 5567778888888888888765777776788888888
Q ss_pred ecCCcccccCC--cchhcCCCCccEEEccCcccccccc---hhhccCCCCcEEEccC
Q 037331 216 LLGNQLSGHLP--STIGHSLPNIKYLTLGANNLFGTIP---NSITNASNLIGLDFTS 267 (330)
Q Consensus 216 l~~~~~~~~~~--~~l~~~~~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~ 267 (330)
+++|.++ .++ ..+. .+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887 433 4444 68888999999888876554 4677888888888763
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1e-15 Score=147.37 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=85.9
Q ss_pred CcccEEEccCCccCccCchhhccCCCCcE-----EEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCccc
Q 037331 65 SFLVSLDISENNFHGHLLKELGQLHRLRV-----VSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRL 139 (330)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 139 (330)
+.++.|++..+.+... +..+-...+|.. +++..+.+. ..+..+..+..|+.|++++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4567777777766532 222222222222 222233333 44556667777777777777776 555555577777
Q ss_pred ceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCC
Q 037331 140 ETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGN 219 (330)
Q Consensus 140 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 219 (330)
++|++++|.+. .+|..+..+++|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 77777777776 66666666777777777776666 44556666666777777666665 55555666666666666666
Q ss_pred cccccCCcchhcCCCCccEEEccCcccccccc
Q 037331 220 QLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP 251 (330)
Q Consensus 220 ~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 251 (330)
.+++.+|..+.........++|++|.+.+.+|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66655544443111112234566666654444
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=6.6e-14 Score=112.74 Aligned_cols=127 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred ceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCC
Q 037331 140 ETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGN 219 (330)
Q Consensus 140 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 219 (330)
++++++++.+. .+|..+ .++++.|++++|.+. .++..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 445433 246777777777665 34456667777777777777777555566667777777777777
Q ss_pred cccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 220 QLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 220 ~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
.++ .++...+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 776 444433336677777777777776555555666777777777777654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1e-13 Score=109.97 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=101.3
Q ss_pred ccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEcc
Q 037331 163 LVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLG 242 (330)
Q Consensus 163 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~ 242 (330)
.+.+++.++++.. ++.. ..++|++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 4667777776653 3322 2468899999999888655566778889999999999887 6666554478899999999
Q ss_pred CcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 243 ANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 243 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9988866666678888999999999988865555678888999999999988765
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.5e-13 Score=109.09 Aligned_cols=130 Identities=20% Similarity=0.266 Sum_probs=83.7
Q ss_pred ceeecccccccccCCCCCCCCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCC
Q 037331 140 ETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGN 219 (330)
Q Consensus 140 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 219 (330)
+.++++++.+. .+|..+ .++|+.|+++++.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45666666655 344332 356777777777766544445666777777777777776544455566777777777777
Q ss_pred cccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCC
Q 037331 220 QLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGH 273 (330)
Q Consensus 220 ~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (330)
.++ .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 776 45544433567777777777777654444456677777777777776643
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.1e-14 Score=113.92 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCCCCccEEEeeccccCCcCcccccCCC-CCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCC
Q 037331 157 IGNLSKLVNLGIGFSNLQGQILTEIGNLQ-NLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPN 235 (330)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~ 235 (330)
+..+.+|+.|++++|.+... + .+..+. +|+.|++++|.+++. ..+..+++|++|++++|.++ .++..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 34455666666666655532 2 233333 666666666666532 34555666666666666665 444443225566
Q ss_pred ccEEEccCcccccccch--hhccCCCCcEEEccCCcccCCCCcc----ccCCCCccEEEcccCccC
Q 037331 236 IKYLTLGANNLFGTIPN--SITNASNLIGLDFTSNSFSGHIPNT----FGNLRHLSVLSLMMNNLT 295 (330)
Q Consensus 236 L~~L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~n~l~ 295 (330)
|+.|++++|.+. .++. .+..+++|+.|++++|.+. .++.. +..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666664 3333 4555666666666666665 33432 555666666666655543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.2e-14 Score=111.68 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=63.4
Q ss_pred cCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCc
Q 037331 182 GNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLI 261 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 261 (330)
..+.+|+.|++++|.++ .++......++|++|++++|.++ .+ ..+. .+++|+.|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~-~~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCC-cc-cccc-cCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455555555555554 22322222235555555555554 22 2222 455555555555555533333335555555
Q ss_pred EEEccCCcccCCCCc--cccCCCCccEEEcccCccCCCCCCCcccccccccceE-EEEeccccc
Q 037331 262 GLDFTSNSFSGHIPN--TFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNC 322 (330)
Q Consensus 262 ~L~l~~n~l~~~~~~--~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~ 322 (330)
.|++++|.+. .++. .+..+++|++|++++|+++..+.. ....+..++.| .+|+++|.+
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~--~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhH--HHHHHHHCCccceeCCCcCCH
Confidence 5555555554 3333 455555555555555555543110 01123444555 555555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.7e-15 Score=121.50 Aligned_cols=84 Identities=24% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccc-hhhccCCCCcE
Q 037331 184 LQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIP-NSITNASNLIG 262 (330)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~ 262 (330)
+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .++ .+. .+++|+.|++++|.+.+... ..+..+++|+.
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 334444444444333 23333333344444444444443 222 222 33444444444444442111 23344444444
Q ss_pred EEccCCccc
Q 037331 263 LDFTSNSFS 271 (330)
Q Consensus 263 L~l~~n~l~ 271 (330)
|++++|.+.
T Consensus 145 L~l~~N~l~ 153 (198)
T 1ds9_A 145 LLLAGNPLY 153 (198)
T ss_dssp EEECSCHHH
T ss_pred EEecCCccc
Confidence 444444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.4e-12 Score=100.52 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=79.0
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
.++++++++.++ .+|..+ .+.|++|++++|.+++..+..+. .+++|+.|+|++|++.+..+..+..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467778777776 455444 36788888888888733344444 67888888888888886666667788888888888
Q ss_pred CCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 267 SNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+|.+.+..+..|..+++|++|++++|+++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888865555688888888888888888765
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.6e-12 Score=101.11 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=91.2
Q ss_pred CCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEc
Q 037331 210 TIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSL 289 (330)
Q Consensus 210 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 289 (330)
..+.++++++.++ .+|..+ .+.++.|+|++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578999999998 788764 478999999999999887888999999999999999999766677899999999999
Q ss_pred ccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 290 MMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 290 ~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
++|+++++ .+ ..+..++.| .++|++|+++
T Consensus 86 ~~N~l~~~--~~---~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSI--PR---GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCC--CT---TTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEe--CH---HHhcCCCCCCEEEeCCCCCC
Confidence 99999988 44 234677889 9999999995
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.5e-12 Score=100.15 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=89.0
Q ss_pred CcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 187 LEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 187 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
-+.++++++.++ .+|..+. +.|+.|++++|.+.+..+..+. .+++|+.|+|++|++.+..+..+..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367899999887 5666553 7899999999999843344444 79999999999999997666667889999999999
Q ss_pred CCcccCCCCccccCCCCccEEEcccCccCCCC
Q 037331 267 SNSFSGHIPNTFGNLRHLSVLSLMMNNLTTES 298 (330)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 298 (330)
+|.+.+..+..|..+++|++|++++|++...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999655556899999999999999998763
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=9.3e-12 Score=98.33 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=85.7
Q ss_pred ccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEcc
Q 037331 163 LVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLG 242 (330)
Q Consensus 163 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~ 242 (330)
-+.++++++++. .++..+ .++|+.|++++|.+++..|..+..+++|++|++++|.++ .+|...+..+++|+.|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 367888887775 444444 378999999999998777788888999999999999998 6777665578999999999
Q ss_pred CcccccccchhhccCCCCcEEEccCCcccC
Q 037331 243 ANNLFGTIPNSITNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 243 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 272 (330)
+|++.+..+..+..+++|+.|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999986656668889999999999998874
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.3e-14 Score=117.37 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=28.9
Q ss_pred hhccCCCCcEEEecCcccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeeccccccc
Q 037331 84 ELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIG 150 (330)
Q Consensus 84 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 150 (330)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 44444555555555554442 23 4444445555555544444 23333333444444444444443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=1.6e-10 Score=103.43 Aligned_cols=245 Identities=12% Similarity=0.060 Sum_probs=115.5
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcc--------------------
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNK-------------------- 100 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------------- 100 (330)
.+|+.+.+.. .++..-..+|.+|.+|+.+++.++ +......+|..+..|+.+.+..+-
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 5677777753 344444456777777777777543 332333445555555544333210
Q ss_pred -cccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccccccCCCCCCCCCCccEEEeeccc-------
Q 037331 101 -LSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSN------- 172 (330)
Q Consensus 101 -~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~------- 172 (330)
.......+|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +.......+..+..|+.+.+..+.
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~ 226 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFA 226 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTT
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhh
Confidence 001112345555666666665432 2234445556666666665443 111222233333333333322111
Q ss_pred --------------cCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccE
Q 037331 173 --------------LQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238 (330)
Q Consensus 173 --------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 238 (330)
........+..+..++.+.+..+... ....++..+..++.+..... .++...+..+.+|+.
T Consensus 227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCE
T ss_pred cccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccccccccc
Confidence 11111122334444555444433221 12223333344444433322 123333335666777
Q ss_pred EEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 239 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+.+..+ +......+|..|.+|+.+++..+ +......+|..+.+|+.+++..+ ++.+
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 766654 33344556666777777776543 33333456677777777777555 4444
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.3e-11 Score=105.97 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=63.9
Q ss_pred EEEccCC-ccCCCCcccccCCCCCcEEEecC-CcccccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEcc
Q 037331 189 YLVLGEN-NLSGFIPPTIFNISTIRVLNLLG-NQLSGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFT 266 (330)
Q Consensus 189 ~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 266 (330)
.++++++ .++ .+|. +..+++|+.|++++ |.+. .++...+..+++|+.|+|++|++.+..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 555 3555 66666677777764 6665 4443333356677777777777766666666667777777777
Q ss_pred CCcccCCCCccccCCCCccEEEcccCccCCC
Q 037331 267 SNSFSGHIPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+|.+.+..+..|..++ |+.|++.+|++.-.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 7776644444444444 77777777766644
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.5e-13 Score=122.03 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCCCcEEEcccCcCCCCCCccccC-----CcccceeecccccccccCCCC-CCCCCCccEEEeeccccCCcCcccc----
Q 037331 112 LSKLQILRLQNNSFTGLIPNSLFN-----LSRLETLRAQFNIIGGTIPSR-IGNLSKLVNLGIGFSNLQGQILTEI---- 181 (330)
Q Consensus 112 l~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l---- 181 (330)
+..|+.|++++|.++......+.. ..+|++|++++|.+....... ...+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357788888888776432222221 246666666666654221111 1123345555555555443222222
Q ss_pred -cCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCccc
Q 037331 182 -GNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLS 222 (330)
Q Consensus 182 -~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 222 (330)
...+.|++|++++|.+++. ++..+...++|++|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234455555555544321 1222233444555555554443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=2.9e-13 Score=120.07 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=108.7
Q ss_pred CcccceeecccccccccCC----CCCC-CCCCccEEEeeccccCCcCccccc-CCCCCcEEEccCCccCCCCcccc----
Q 037331 136 LSRLETLRAQFNIIGGTIP----SRIG-NLSKLVNLGIGFSNLQGQILTEIG-NLQNLEYLVLGENNLSGFIPPTI---- 205 (330)
Q Consensus 136 l~~L~~L~l~~~~l~~~~~----~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l---- 205 (330)
.+.|+.|++++|.+..... ..+. ..++|+.|++++|.+.......+. .+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3568888998888763221 1122 236889999988887643333222 34678899999988864333332
Q ss_pred -cCCCCCcEEEecCCccccc----CCcchhcCCCCccEEEccCcccccc----cchhhccCCCCcEEEccCCcccCC---
Q 037331 206 -FNISTIRVLNLLGNQLSGH----LPSTIGHSLPNIKYLTLGANNLFGT----IPNSITNASNLIGLDFTSNSFSGH--- 273 (330)
Q Consensus 206 -~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~--- 273 (330)
...+.|+.|++++|.+++. ++..+. ..++|++|+|++|.+.+. +...+..+++|+.|+|++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2457899999999988632 222333 577899999999988753 244556777899999999988742
Q ss_pred -CCccccCCCCccEEEcccCccCCC
Q 037331 274 -IPNTFGNLRHLSVLSLMMNNLTTE 297 (330)
Q Consensus 274 -~~~~~~~l~~L~~l~l~~n~l~~~ 297 (330)
+...+...++|++|++++|.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 333455678899999999988765
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=1.2e-09 Score=97.76 Aligned_cols=244 Identities=10% Similarity=0.082 Sum_probs=130.4
Q ss_pred eEEEEEccCCccccccCCcccCCCcccEEEccCC---ccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEE
Q 037331 42 RVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN---NFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQIL 118 (330)
Q Consensus 42 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 118 (330)
.|+.+.+... ++..-..+|.+|.+|+.+.+..+ .+......+|..+.+|+.+.+..+ ++.+....+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4888888654 55555677899999999988765 244444566777777776655543 333444556666677777
Q ss_pred EcccCcCCCCCCccccCCcccceeeccccccc---------------------ccCCCCCCCCCCccEEEeecccc----
Q 037331 119 RLQNNSFTGLIPNSLFNLSRLETLRAQFNIIG---------------------GTIPSRIGNLSKLVNLGIGFSNL---- 173 (330)
Q Consensus 119 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~---------------------~~~~~~~~~~~~L~~L~l~~~~~---- 173 (330)
.+... +.......|..+..|+.+.+..+--. ......+..+.++..+.......
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~ 221 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAID 221 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred cccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccccc
Confidence 66533 22233445555555555555432110 01112223333333332211100
Q ss_pred --------------------------------CCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcc
Q 037331 174 --------------------------------QGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQL 221 (330)
Q Consensus 174 --------------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 221 (330)
.......|..+..|+.+.+..+... ....++.+++.|+.+.+.. .+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i 299 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RI 299 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TC
T ss_pred ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cc
Confidence 0011122344555555555433221 2334455566666666642 33
Q ss_pred cccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCc
Q 037331 222 SGHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNN 293 (330)
Q Consensus 222 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 293 (330)
. .++...+.+|.+|+++.|..+ +......+|..|.+|+.+.+..+ +......+|..|.+|+.+++.++.
T Consensus 300 ~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 300 T-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred c-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 3 455555556677777777654 44345556667777777777543 333334567777777777776654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.15 E-value=8.7e-10 Score=98.65 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=162.0
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCC---------------------ccCccCchhhccCCCCcEEEecCc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN---------------------NFHGHLLKELGQLHRLRVVSFAYN 99 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~---------------------~~~~~~~~~~~~l~~L~~L~l~~~ 99 (330)
.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ........+|..+.+|+.+.+..+
T Consensus 94 ~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 94 SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS 172 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred CCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc
Confidence 67888888654 44334456777777776655432 111122346778888999988765
Q ss_pred ccccccCccccCCCCCcEEEcccCcCCCCCCccccCCcccceeecccccc---------------------cccCCCCCC
Q 037331 100 KLSGSFSSWIGVLSKLQILRLQNNSFTGLIPNSLFNLSRLETLRAQFNII---------------------GGTIPSRIG 158 (330)
Q Consensus 100 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l---------------------~~~~~~~~~ 158 (330)
... .....|..+.+|+.+.+..+ +.......|..+..|+.+.+..+.. .......+.
T Consensus 173 ~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~ 250 (394)
T 4fs7_A 173 MET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFY 250 (394)
T ss_dssp CCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTT
T ss_pred cce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceeccccccc
Confidence 433 55667788888888888655 3334445566666666655543211 111223456
Q ss_pred CCCCccEEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccE
Q 037331 159 NLSKLVNLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKY 238 (330)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 238 (330)
.+..++.+.+..+. .......+..+..++.+......+. ..++..+.+|+.+.+..+ +. .+....+..|.+|++
T Consensus 251 ~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCc-ceeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCE
Confidence 67788888876543 2244456778888888877665433 345677889999999765 54 666666768999999
Q ss_pred EEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccC
Q 037331 239 LTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292 (330)
Q Consensus 239 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 292 (330)
+.|..+ +......+|..|.+|+.+.+..+ +......+|..|++|+.+++..+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999865 65566788999999999999876 55455668999999999999765
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=101.56 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=87.6
Q ss_pred cEEEecCC-cccccCCcchhcCCCCccEEEccC-cccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEc
Q 037331 212 RVLNLLGN-QLSGHLPSTIGHSLPNIKYLTLGA-NNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSL 289 (330)
Q Consensus 212 ~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 289 (330)
..++.+++ +++ .+|. +. .+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35677887 887 7888 65 788999999996 9999777788999999999999999999888888999999999999
Q ss_pred ccCccCCCCCCCcccccccccceE-EEEecccccc
Q 037331 290 MMNNLTTESSSVDRWSFLSSFTLL-YLYFQLNNCN 323 (330)
Q Consensus 290 ~~n~l~~~~~~~~~~~~l~~l~~l-~l~l~~n~~~ 323 (330)
++|+|+++ .+..+.. ++ | .|+|.+|+++
T Consensus 88 ~~N~l~~~--~~~~~~~---~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESL--SWKTVQG---LS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCC--CSTTTCS---CC-CCEEECCSSCCC
T ss_pred CCCcccee--CHHHccc---CC-ceEEEeeCCCcc
Confidence 99999988 3433433 33 8 9999999995
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=6e-09 Score=93.21 Aligned_cols=252 Identities=10% Similarity=0.088 Sum_probs=157.3
Q ss_pred ccCCcccCCC-cccEEEccCCccCccCchhhccCCCCcEEEecCcc---cccccCccccCCCCCcEEEcccCcCCCCCCc
Q 037331 56 TIPGHLGNLS-FLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNK---LSGSFSSWIGVLSKLQILRLQNNSFTGLIPN 131 (330)
Q Consensus 56 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 131 (330)
.-..+|.+++ .|+.+.+.+. +......+|.++.+|+.+.+..+. ++.+...+|..+..|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345688885 5999999764 555667889999999999998753 55455677888899998877654 4445667
Q ss_pred cccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCc----------------------CcccccCCCCCcE
Q 037331 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQ----------------------ILTEIGNLQNLEY 189 (330)
Q Consensus 132 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------~~~~l~~~~~L~~ 189 (330)
.|..+.+|+.+.+..... ......+..+..|+.+.+..+ +... ....+..+..+..
T Consensus 132 aF~~c~~L~~i~lp~~~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALST 209 (394)
T ss_dssp TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCE
T ss_pred hhhhhcccccccccceee-eecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccce
Confidence 788999999999875432 233445666666766666432 1111 1112333334433
Q ss_pred EEccCCccC------------------------------------CCCcccccCCCCCcEEEecCCcccccCCcchhcCC
Q 037331 190 LVLGENNLS------------------------------------GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSL 233 (330)
Q Consensus 190 L~l~~~~~~------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 233 (330)
......... .....++..+..|+.+.+..+.. .+....+..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c 287 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNC 287 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTC
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--eecCcccccc
Confidence 332211100 00112344556677776654433 3444445577
Q ss_pred CCccEEEccCcccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccCccCCCCCCCcccccccccceE
Q 037331 234 PNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSVDRWSFLSSFTLL 313 (330)
Q Consensus 234 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~~l 313 (330)
+.|+.+.+.. .+......+|..|.+|+.+.|..+ +......+|..|.+|+.+.+..+ ++.+ ....| ..+++|
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I--~~~aF---~~C~~L 359 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKI--PESAF---SNCTAL 359 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBC--CGGGG---TTCTTC
T ss_pred cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEE--hHhHh---hCCCCC
Confidence 8888888864 444456677888999999998754 44344568899999999999654 5555 33224 455556
Q ss_pred -EEEecccc
Q 037331 314 -YLYFQLNN 321 (330)
Q Consensus 314 -~l~l~~n~ 321 (330)
.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 66666654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=1e-07 Score=84.58 Aligned_cols=78 Identities=5% Similarity=0.030 Sum_probs=46.5
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEEc
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILRL 120 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 120 (330)
.+++.+.+.. +++..-..+|.+|.+|+.+.+..+ +......+|..+ +|+.+.+..+ +..+...+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 5577777754 455445567888888888888654 444445666666 5666666543 33233344443 36777776
Q ss_pred ccC
Q 037331 121 QNN 123 (330)
Q Consensus 121 ~~~ 123 (330)
..+
T Consensus 121 p~~ 123 (379)
T 4h09_A 121 PGA 123 (379)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=6.5e-10 Score=97.87 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=76.1
Q ss_pred cccCCcccceeecccccccccCCCCCCCCCCccEEEeeccccCCcCccccc--CCCCCcEEEccCC--ccCCC-----Cc
Q 037331 132 SLFNLSRLETLRAQFNIIGGTIPSRIGNLSKLVNLGIGFSNLQGQILTEIG--NLQNLEYLVLGEN--NLSGF-----IP 202 (330)
Q Consensus 132 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~-----~~ 202 (330)
.+..+|+|+.|.+.++.-. .++. + ..++|+.|.+..+.+.......+. .+++|+.|+|+.+ ...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666554211 2222 2 256667777666555433322332 4666776666421 11100 11
Q ss_pred ccc--cCCCCCcEEEecCCcccccCCcchhc--CCCCccEEEccCccccccc----chhhccCCCCcEEEccCCcccCCC
Q 037331 203 PTI--FNISTIRVLNLLGNQLSGHLPSTIGH--SLPNIKYLTLGANNLFGTI----PNSITNASNLIGLDFTSNSFSGHI 274 (330)
Q Consensus 203 ~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~ 274 (330)
..+ ..+++|++|++.+|.+.+..+..++. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+.+..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 13566777777666665332222221 3456777777776665432 222344566777777766655432
Q ss_pred CccccC-CCCccEEEcccCc
Q 037331 275 PNTFGN-LRHLSVLSLMMNN 293 (330)
Q Consensus 275 ~~~~~~-l~~L~~l~l~~n~ 293 (330)
-..+.. + ...+++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 222322 1 2346666655
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=2.2e-09 Score=94.50 Aligned_cols=85 Identities=9% Similarity=0.252 Sum_probs=56.5
Q ss_pred CCCCCcEEEccCCccCCCCccccc---CCCCCcEEEecCCcccccCCcchh---cCCCCccEEEccCcccccccchhhcc
Q 037331 183 NLQNLEYLVLGENNLSGFIPPTIF---NISTIRVLNLLGNQLSGHLPSTIG---HSLPNIKYLTLGANNLFGTIPNSITN 256 (330)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~~~~~~ 256 (330)
.+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+.+.....+. ..+++|+.|+|++|.++......+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 478889999888877643332332 467899999999888643222222 14688999999999887554444443
Q ss_pred -CCCCcEEEccCCc
Q 037331 257 -ASNLIGLDFTSNS 269 (330)
Q Consensus 257 -~~~L~~L~l~~n~ 269 (330)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567887775
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.79 E-value=4.9e-07 Score=80.24 Aligned_cols=241 Identities=11% Similarity=0.076 Sum_probs=130.8
Q ss_pred CceEEEEEccCCccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCcccccccCccccCCCCCcEEE
Q 037331 40 HQRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYNKLSGSFSSWIGVLSKLQILR 119 (330)
Q Consensus 40 ~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 119 (330)
..+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +......+|..+ +|+.+.+..+-.. ....++... .++.+.
T Consensus 68 C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~ 141 (379)
T 4h09_A 68 CYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGATTE-IGNYIFYNS-SVKRIV 141 (379)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTCCE-ECTTTTTTC-CCCEEE
T ss_pred CCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcccc-ccccccccc-eeeeee
Confidence 377999999654 554445667777 5777777543 333334455543 6888887654222 223333332 444444
Q ss_pred cccCcCCCCCCccccCCcccceeecccccc-----------------------------------cccCCCCCCCCCCcc
Q 037331 120 LQNNSFTGLIPNSLFNLSRLETLRAQFNII-----------------------------------GGTIPSRIGNLSKLV 164 (330)
Q Consensus 120 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-----------------------------------~~~~~~~~~~~~~L~ 164 (330)
+..+ ++......+..+..++.+.+..... .......+..+.+++
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLK 220 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCS
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccc
Confidence 4322 2223333444444444443322110 001122233445555
Q ss_pred EEEeeccccCCcCcccccCCCCCcEEEccCCccCCCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCc
Q 037331 165 NLGIGFSNLQGQILTEIGNLQNLEYLVLGENNLSGFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGAN 244 (330)
Q Consensus 165 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n 244 (330)
.+.+... +.......+..+..|+.+.+..+ ++.....++.++..|+.+.+..+ +. .++...+..|.+|+++.+.++
T Consensus 221 ~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 221 KITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCT
T ss_pred eeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccccccccccc
Confidence 5555432 22223334556667777776554 33233445566677777777543 33 455555557777888877777
Q ss_pred ccccccchhhccCCCCcEEEccCCcccCCCCccccCCCCccEEEcccC
Q 037331 245 NLFGTIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLRHLSVLSLMMN 292 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 292 (330)
.+......+|..|.+|+.+.|..+ +......+|..|.+|+.+.+..+
T Consensus 297 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 297 AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 666556667777777887777544 33333456777777777777543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=4.7e-08 Score=77.68 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred cccCCCCCcEEEccCC-ccCCC----CcccccCCCCCcEEEecCCccccc----CCcchhcCCCCccEEEccCcccccc-
Q 037331 180 EIGNLQNLEYLVLGEN-NLSGF----IPPTIFNISTIRVLNLLGNQLSGH----LPSTIGHSLPNIKYLTLGANNLFGT- 249 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~L~~n~~~~~- 249 (330)
.+...+.|++|++++| .+... +...+...+.|++|++++|.+... +...+. ..+.|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence 3445566666666666 55422 223344456666666666666422 112222 345667777777666543
Q ss_pred ---cchhhccCCCCcEEEc--cCCcccCC----CCccccCCCCccEEEcccCccC
Q 037331 250 ---IPNSITNASNLIGLDF--TSNSFSGH----IPNTFGNLRHLSVLSLMMNNLT 295 (330)
Q Consensus 250 ---~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~l~l~~n~l~ 295 (330)
+...+...+.|+.|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455566777777 56666532 2233445566777777666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=3.8e-08 Score=78.27 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=89.9
Q ss_pred cccccCCCCCcEEEecCC-ccccc----CCcchhcCCCCccEEEccCcccccc----cchhhccCCCCcEEEccCCcccC
Q 037331 202 PPTIFNISTIRVLNLLGN-QLSGH----LPSTIGHSLPNIKYLTLGANNLFGT----IPNSITNASNLIGLDFTSNSFSG 272 (330)
Q Consensus 202 ~~~l~~l~~L~~L~l~~~-~~~~~----~~~~l~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 272 (330)
...+...+.|++|++++| .+... +...+. ..+.|++|+|++|.+... +...+...+.|+.|+|++|.+.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345567889999999999 88632 223333 578999999999998754 33445667899999999999875
Q ss_pred C----CCccccCCCCccEEEc--ccCccCCCCCCCccc-ccccccceE-EEEeccccccc
Q 037331 273 H----IPNTFGNLRHLSVLSL--MMNNLTTESSSVDRW-SFLSSFTLL-YLYFQLNNCNI 324 (330)
Q Consensus 273 ~----~~~~~~~l~~L~~l~l--~~n~l~~~~~~~~~~-~~l~~l~~l-~l~l~~n~~~~ 324 (330)
. +...+...++|++|++ ++|.+... ....+ ..+...+.| ++++++|.++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~--g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNN--VEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH--HHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHH--HHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3 3456778889999999 88998765 32222 345666889 99999999864
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=4.4e-07 Score=70.64 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=52.4
Q ss_pred ceEEEEEccCCccccccCCcccCCCcccEEEccCC-ccCccCchhhccC----CCCcEEEecCcc-cccccCccccCCCC
Q 037331 41 QRVTALNLLDMGLRGTIPGHLGNLSFLVSLDISEN-NFHGHLLKELGQL----HRLRVVSFAYNK-LSGSFSSWIGVLSK 114 (330)
Q Consensus 41 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~l~~ 114 (330)
.+|++|++++|.++..-...+.++++|++|+|++| .+++.....+..+ ++|+.|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45777777777766554455667777777777777 3554444555543 357777777664 55433344556677
Q ss_pred CcEEEcccCc
Q 037331 115 LQILRLQNNS 124 (330)
Q Consensus 115 L~~L~l~~~~ 124 (330)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.9e-07 Score=70.97 Aligned_cols=83 Identities=10% Similarity=0.094 Sum_probs=41.4
Q ss_pred CCcEEEecCCcccccCCcchhcCCCCccEEEccCcc-cccccchhhccC----CCCcEEEccCCc-ccCCCCccccCCCC
Q 037331 210 TIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANN-LFGTIPNSITNA----SNLIGLDFTSNS-FSGHIPNTFGNLRH 283 (330)
Q Consensus 210 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~~ 283 (330)
.|+.|++++|.++..-...+. .+++|++|+|++|. +++.....+..+ ++|+.|+|++|. +++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455555555555433333333 45566666666653 443333333332 356666666653 44333334455666
Q ss_pred ccEEEcccCc
Q 037331 284 LSVLSLMMNN 293 (330)
Q Consensus 284 L~~l~l~~n~ 293 (330)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=8.4e-07 Score=74.25 Aligned_cols=64 Identities=23% Similarity=0.400 Sum_probs=51.1
Q ss_pred CCCCccEEEccCccccc--ccchhhccCCCCcEEEccCCcccCCCCccccCCC--CccEEEcccCccCCC
Q 037331 232 SLPNIKYLTLGANNLFG--TIPNSITNASNLIGLDFTSNSFSGHIPNTFGNLR--HLSVLSLMMNNLTTE 297 (330)
Q Consensus 232 ~~~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~l~l~~n~l~~~ 297 (330)
.+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..++.+. +|++|++++|++.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 57899999999999986 3456677899999999999999853 2344444 899999999998763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=5.1e-06 Score=69.49 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=39.5
Q ss_pred CCCCCcEEEecCCcccc--cCCcchhcCCCCccEEEccCcccccccchhhccCC--CCcEEEccCCcccCCCCc------
Q 037331 207 NISTIRVLNLLGNQLSG--HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNAS--NLIGLDFTSNSFSGHIPN------ 276 (330)
Q Consensus 207 ~l~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~------ 276 (330)
++++|+.|++++|.+.+ .++..+. .+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+..|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34555666666665552 2222222 456666666666666532 1122222 566666666666543331
Q ss_pred -cccCCCCccEEE
Q 037331 277 -TFGNLRHLSVLS 288 (330)
Q Consensus 277 -~~~~l~~L~~l~ 288 (330)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244556666554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=5.7e-05 Score=59.87 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=59.4
Q ss_pred cCCCCCcEEEccCC-ccCCC----CcccccCCCCCcEEEecCCcccccCC----cchhcCCCCccEEEccCcccccc---
Q 037331 182 GNLQNLEYLVLGEN-NLSGF----IPPTIFNISTIRVLNLLGNQLSGHLP----STIGHSLPNIKYLTLGANNLFGT--- 249 (330)
Q Consensus 182 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~~L~~L~L~~n~~~~~--- 249 (330)
..-+.|++|+++++ .+.+. +..++...+.|+.|++++|++..... ..+. .-..|++|+|++|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHH
Confidence 34456666666664 44321 23444555667777777776653222 2222 345677777777776543
Q ss_pred -cchhhccCCCCcEEEccCCcc---cC----CCCccccCCCCccEEEcccCc
Q 037331 250 -IPNSITNASNLIGLDFTSNSF---SG----HIPNTFGNLRHLSVLSLMMNN 293 (330)
Q Consensus 250 -~~~~~~~~~~L~~L~l~~n~l---~~----~~~~~~~~l~~L~~l~l~~n~ 293 (330)
+...+...+.|+.|+|++|.. .. .+...+..-++|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223344555677777765422 21 122334555667777776554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.68 E-value=0.00048 Score=54.54 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=66.7
Q ss_pred CCCccEEEeecc-ccCCc----CcccccCCCCCcEEEccCCccCCC----CcccccCCCCCcEEEecCCcccccCCcchh
Q 037331 160 LSKLVNLGIGFS-NLQGQ----ILTEIGNLQNLEYLVLGENNLSGF----IPPTIFNISTIRVLNLLGNQLSGHLPSTIG 230 (330)
Q Consensus 160 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 230 (330)
-+.|++|+++++ .+... +...+..-+.|+.|+|++|.+.+. +..++...+.|++|++++|.+.......+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345666666653 44322 233445556788888888877642 334455667888888888887643222222
Q ss_pred ---cCCCCccEEEccCc---ccccc----cchhhccCCCCcEEEccCCcc
Q 037331 231 ---HSLPNIKYLTLGAN---NLFGT----IPNSITNASNLIGLDFTSNSF 270 (330)
Q Consensus 231 ---~~~~~L~~L~L~~n---~~~~~----~~~~~~~~~~L~~L~l~~n~l 270 (330)
.....|++|+|+++ .+... +...+...+.|+.|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 13456888888764 33321 334456677888888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0075 Score=44.32 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=35.2
Q ss_pred EEEecCCccc-ccCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCCccc
Q 037331 213 VLNLLGNQLS-GHLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSNSFS 271 (330)
Q Consensus 213 ~L~l~~~~~~-~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 271 (330)
.++-++++++ ..+|..+ .++++.|+|++|++....+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555555553 2455432 346777777777777555566667777777777777543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.027 Score=41.27 Aligned_cols=57 Identities=28% Similarity=0.413 Sum_probs=44.2
Q ss_pred cEEEccCCccC-CCCcccccCCCCCcEEEecCCcccccCCcchhcCCCCccEEEccCcccc
Q 037331 188 EYLVLGENNLS-GFIPPTIFNISTIRVLNLLGNQLSGHLPSTIGHSLPNIKYLTLGANNLF 247 (330)
Q Consensus 188 ~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ 247 (330)
..++.+++.++ ..+|..+ .++|+.|+|++|.++ .++...+..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 36777887775 2455433 347999999999998 888877778899999999999775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.56 E-value=4.9 Score=27.46 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=26.1
Q ss_pred cCCcchhcCCCCccEEEccCcccccccchhhccCCCCcEEEccCC
Q 037331 224 HLPSTIGHSLPNIKYLTLGANNLFGTIPNSITNASNLIGLDFTSN 268 (330)
Q Consensus 224 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 268 (330)
.+....|.+|..|+++.|..+ ++.....+|..|.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444555556667777776654 33345556666777777666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.20 E-value=13 Score=25.29 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=27.9
Q ss_pred ccccccCCcccCCCcccEEEccCCccCccCchhhccCCCCcEEEecCc
Q 037331 52 GLRGTIPGHLGNLSFLVSLDISENNFHGHLLKELGQLHRLRVVSFAYN 99 (330)
Q Consensus 52 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 99 (330)
+++..-..+|.+|.+|+.+.+..+ ++.....+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344333455677777777777653 33344556677777777766653
Done!