BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037332
(1007 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 14 NSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGS 72
++ K+DVFLSFRG DTR+NF S L+ L R+ I+TF D+ EL+ G SP + + I S
Sbjct: 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVS 63
Query: 73 KILVIIFSKNYASSKWCLDELVKILECKNMNDQVVVPVFYHVDPSDVRKQTGSFGDAFSK 132
+ V++ S+NYA+S WCLDELV I++ + V+P+FY V+P+ VR QTG + F K
Sbjct: 64 RFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKK 123
Query: 133 LEQQFTEMPEKVQLWRAVLTEASNLSGWDSTNIRSEAQLVDVIVKDILKK 182
+ E PEKV WR LT + LSG S + +++LVD I +I K
Sbjct: 124 HASR--EDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 18 KFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTF-TDEELKRGDEISPAILNAIIGSKILV 76
+++VFLSFRG DTR FT L+ +L R KI TF D+EL +G EI P +L AI SKI V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 77 IIFSKNYASSKWCLDELVKILECKNMND-QVVVPVFYHVDPSDVRKQTGSFGDAFSKLEQ 135
I S YA SKWCL EL +I+ + + ++++P+FY VDPSDVR QTG + AF K
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 136 QFTEMPEKVQLWRAVLTEASNLSGWDSTNIRSEAQLVDVIVKDI 179
+F + +Q W+ L + +L GW + + D + DI
Sbjct: 155 KFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 779 NCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLG 838
+ + L P+ ++ L + L+ ++ L +SI L RLR L +R C +L LPE L
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 839 S---------LKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSL 889
S L +L + E + I +PASIA+L +KSL L + L L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 890 TELDLKDC-GIREIPQDIGSVFALEKIDLSG-NNFETLPASMKQLSRLRYLYLINC 943
ELDL+ C +R P G L+++ L +N TLP + +L++L L L C
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 610 NLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLA 669
NL L L + I+ + LKS+ +R S P +P LE+++L CT L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 670 YIPCNIQNFINLGVLCFRGCKSLKCFPHDIH-FTSPIKIDISYCVNLTEFP----KISGN 724
P L L + C +L P DIH T K+D+ CVNL+ P ++ N
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 725 IIVL 728
I+L
Sbjct: 304 CIIL 307
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 20/195 (10%)
Query: 664 NCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIK-IDISYCVNLTEFPK-- 720
+ L +P Q F L L L+ P I + ++ + I C LTE P+
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 721 ----ISG------NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLR 770
SG N+ L L + I +P+SI +L L L + + L +L +I L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLP 229
Query: 771 SLYWLYLNNCSKLESFPEIL---EKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLREC 827
L L L C+ L ++P I ++RL D S + L I L +L L LR C
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS--NLLTLPLDIHRLTQLEKLDLRGC 287
Query: 828 SKLVSLPENLGSLKS 842
L LP + L +
Sbjct: 288 VNLSRLPSLIAQLPA 302
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 886 LCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINC 943
L L + G+ E+P LE + L+ N LPAS+ L+RLR L + C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 40/266 (15%)
Query: 248 CFVANVR----EESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV---- 299
CF V + +K G+L++L+ + +E+ R P E K RLR + +
Sbjct: 177 CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHP 236
Query: 300 --FIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-FGVSNIYKV-NGLENH 355
++LDDV + L F +I++TTRDK V D+ G ++ V +GL
Sbjct: 237 RSLLILDDV-------WDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 356 EAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ-KNKLDWEIALEN 414
+ ++ + N EDL + ++ G+PL + ++G+ L N+ W L
Sbjct: 290 KGLEILSLFV---NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYLRQ 344
Query: 415 LKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDKDYVT---MSQDDPNFAYYVL 471
L+ + + K S + +A +++M + + + + KDY T + Q D VL
Sbjct: 345 LQ---NKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTDLSILQKDVKVPTKVL 400
Query: 472 NVLVDKSLVTISCFNKLQMHDLLQEM 497
VL D ++ D+LQE
Sbjct: 401 CVLWD--------LETEEVEDILQEF 418
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 782 KLESFPEILEKMERLSYMDLSWTKIKELK-SSIDHLERLRNLKLRECSKLVSLPEN---- 836
K+ SF + + L + LS I+ ++ + + L L L+L + ++L ++P
Sbjct: 80 KVNSF----KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVY 134
Query: 837 LGSLKSLVY----IEAERS-AISQVPA-SIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLT 890
L LK L IE+ S A +++P+ L E+K LS+ + GL +L
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------ISEGAFEGLSNLR 188
Query: 891 ELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYLI 941
L+L C +REIP ++ + L+++DLSGN+ + P S + L L+ L++I
Sbjct: 189 YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 684 LCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISG--NIIVLDLRDSAIEEVP-- 739
L F+GC C D TS +D+S+ +T G + LD + S ++++
Sbjct: 359 LSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 740 SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-PEILEKMERLSY 798
S SL L+ LD+S+ + + L SL L + S E+F P+I ++ L++
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 799 MDLSWTKIKELK-SSIDHLERLRNLKLRECS--KLVSLP-ENLGSLKSLVY-----IEAE 849
+DLS ++++L ++ + L L+ L + + L + P + L SL+ L Y + ++
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 850 RSAISQVPASIAHLN 864
+ + P+S+A LN
Sbjct: 535 KQELQHFPSSLAFLN 549
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 112/282 (39%), Gaps = 41/282 (14%)
Query: 664 NCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVN-LTEFPKIS 722
N T+L +P ++ G SL P P +++S N LT P +
Sbjct: 72 NLTSLPALPPELRTLEVSG----NQLTSLPVLP-------PGLLELSIFSNPLTHLPALP 120
Query: 723 GNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSK 782
+ L + + + +P L L D + L +L + +CKL W Y N +
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKL----WAYNN---Q 172
Query: 783 LESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKS 842
L S P + ++ LS D + L S + L N +L SLP LK
Sbjct: 173 LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-------RLTSLPALPSGLKE 225
Query: 843 LVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREI 902
L+ +++ +P+ E+K L +G R LP L SGL SL+ + + +
Sbjct: 226 LIVSGNRLTSLPVLPS------ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRL 276
Query: 903 PQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCY 944
P+ + + + ++L GN P S + L LR + Y
Sbjct: 277 PESLIHLSSETTVNLEGN-----PLSERTLQALREITSAPGY 313
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 40/266 (15%)
Query: 248 CFVANVR----EESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV---- 299
CF V + +K G+L++L+ + +E+ R P E K RLR + +
Sbjct: 184 CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHP 243
Query: 300 --FIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-FGVSNIYKV-NGLENH 355
++LDDV + L F +I++TT DK V D+ G ++ V +GL
Sbjct: 244 RSLLILDDV-------WDPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 356 EAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ-KNKLDWEIALEN 414
+ ++ + N EDL + ++ G+PL + ++G+ L N+ W L
Sbjct: 297 KGLEILSLFV---NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYLRQ 351
Query: 415 LKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDKDYVT---MSQDDPNFAYYVL 471
L+ + + K S + +A +++M + + + + KDY T + Q D VL
Sbjct: 352 LQ---NKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTDLSILQKDVKVPTKVL 407
Query: 472 NVLVDKSLVTISCFNKLQMHDLLQEM 497
VL D ++ D+LQE
Sbjct: 408 CVLWD--------LETEEVEDILQEF 425
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 41/269 (15%)
Query: 244 FEGKCFVANVR----EESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV 299
EG CF V + +K G+L++L+ DE+ R P E K RLR + +
Sbjct: 180 LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 238
Query: 300 ------FIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-FGVSNIYKV-NG 351
++LDDV + + L F +I++TTRDK V D+ G + V +
Sbjct: 239 RKHPRSLLILDDV-------WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS 291
Query: 352 LENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ-KNKLDWEI 410
L + ++ + N DL + ++ G+PL + ++G+ L N+ WE
Sbjct: 292 LGKEKGLEILSLFV---NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEY 346
Query: 411 ALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDKDYVT---MSQDDPNFA 467
L+ L+ + + K S + +A +++M + + + + KDY T + Q D
Sbjct: 347 YLKQLQ---NKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTDLSILQKDVKVP 402
Query: 468 YYVLNVLVDKSLVTISCFNKLQMHDLLQE 496
VL +L D ++ D+LQE
Sbjct: 403 TKVLCILWD--------METEEVEDILQE 423
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 33/249 (13%)
Query: 244 FEGKCFVANVR----EESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV 299
EG CF V + +K G+L++L+ DE+ R P E K RLR + +
Sbjct: 174 LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 232
Query: 300 ------FIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-FGVSNIYKV-NG 351
++LDDV + + L F +I++TTRDK V D+ G + V +
Sbjct: 233 RKHPRSLLILDDV-------WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS 285
Query: 352 LENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ-KNKLDWEI 410
L + ++ + N DL + ++ G+PL + ++G+ L N+ WE
Sbjct: 286 LGKEKGLEILSLFV---NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEY 340
Query: 411 ALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDKDYVT---MSQDDPNFA 467
L+ L+ + + K S + +A +++M + + + + KDY T + Q D
Sbjct: 341 YLKQLQ---NKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTDLSILQKDVKVP 396
Query: 468 YYVLNVLVD 476
VL +L D
Sbjct: 397 TKVLCILWD 405
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 684 LCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISG--NIIVLDLRDSAIEEVP-- 739
L F+GC C D S +D+S+ +T G + LD + S ++++
Sbjct: 383 LSFKGC----CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 438
Query: 740 SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-PEILEKMERLSY 798
S SL L+ LD+S+ + + L SL L + S E+F P+I ++ L++
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 799 MDLSWTKIKELK-SSIDHLERLRNLKLRECS--KLVSLP-ENLGSLKSLVY-----IEAE 849
+DLS ++++L ++ + L L+ L + + L + P + L SL+ L Y + ++
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 850 RSAISQVPASIAHLN 864
+ + P+S+A LN
Sbjct: 559 KQELQHFPSSLAFLN 573
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 684 LCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISG--NIIVLDLRDSAIEEVP-- 739
L F+GC C D TS +D+S+ +T G + LD + S ++++
Sbjct: 64 LSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 119
Query: 740 SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-PEILEKMERLSY 798
S SL L+ LD+S+ + + L SL L + S E+F P+I ++ L++
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 799 MDLSWTKIKELK-SSIDHLERLRNLKLRECS--KLVSLP-ENLGSLKSLVY-----IEAE 849
+DLS ++++L ++ + L L+ L + + L + P + L SL+ L Y + ++
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 850 RSAISQVPASIAHLN 864
+ + P+S+A LN
Sbjct: 240 KQELQHFPSSLAFLN 254
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLK-SLSTSICKLRSLYWLYLNNCSKLESF 786
+D R VP+ I + ++ L + T+L+ + S+ L+ LY ++L +
Sbjct: 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYL----GSNQLGAL 79
Query: 787 P-EILEKMERLSYMDLSWTKIKELKSSI-DHLERLRNLKLRECSKLVSLPENLGSLKSLV 844
P + + + +L+ +DL ++ L S++ D L L+ L + C+KL LP + L L
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLT 138
Query: 845 YIEAERSAISQVP 857
++ +++ + +P
Sbjct: 139 HLALDQNQLKSIP 151
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 41/250 (16%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYL-NNCSKLESF 786
LDL + + +PS IE + +L KL L+ + + + SL LY+ N KL+
Sbjct: 282 LDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLG 341
Query: 787 PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLK----------------LRECSKL 830
LEK+E L +DLS + I+ L+ LR+L+ +EC +L
Sbjct: 342 TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 831 -----------VSLP----ENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR 875
V P +NL L+ L +Q +A L +++ L+ G
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQ--HLLAGLQDLRHLNLQGNS 459
Query: 876 ----NLVLPTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPASMK 930
++ LL + SL L L C + I Q + + +DLS N+ SM
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG--DSMD 517
Query: 931 QLSRLRYLYL 940
LS L+ LYL
Sbjct: 518 ALSHLKGLYL 527
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 684 LCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISG--NIIVLDLRDSAIEEVP-- 739
L F+GC C D TS +D+S+ +T G + LD + S ++++
Sbjct: 359 LSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 740 SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-PEILEKMERLSY 798
S SL L+ LD+S+ + + L SL L + S E+F P+I ++ L++
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 799 MDLSWTKIKELK-SSIDHLERLRNLKLRECSKLVSLPENL 837
+DLS ++++L ++ + L L+ L + ++L S+P+ +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMAS-NQLKSVPDGI 513
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 882 LLSGLCSLTELDLKDCGIREIPQDI-GSVFALEKIDLSGNNFETLPASM 929
L GL L L+L+ G EIP ++ +F L+ IDL NN TLPAS+
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 882 LLSGLCSLTELDLKDCGIREIPQDI-GSVFALEKIDLSGNNFETLPASM 929
L GL L L+L+ G EIP ++ +F L+ IDL NN TLPAS+
Sbjct: 536 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 882 LLSGLCSLTELDLKDCGIREIPQDI-GSVFALEKIDLSGNNFETLPASM 929
L GL L L+L+ G EIP ++ +F L+ IDL NN TLPAS+
Sbjct: 541 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 36.6 bits (83), Expect = 0.076, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 13 LNSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIG 71
L S D+F+S ED + +F L L + + D+ L+ GD + +I +
Sbjct: 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGS 73
Query: 72 SKILVIIFSKNYASSKWCLDELVKILECKNMNDQVVVPVFYHVDPSDVRKQTGSFGDAFS 131
S+ +++ S ++ +W EL + + ++ ++P+++ V +V + + D +
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 45/252 (17%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYL-NNCSKLESF 786
LDL + ++ +PS ++ L L KL LS + S SL LY+ N KL
Sbjct: 280 LDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG 339
Query: 787 PEILEKMERLSYMDLSWTKIK-------ELKSSIDHLER----------LRNLKLRECSK 829
LEK+ L +DLS I+ +LK ++ HL+ L++ +EC +
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLK-NLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 830 L-----------VSLP----ENLGSLK--SLVYI---EAERSAISQVPASIAHLNEVKSL 869
L ++ P +NL L+ +L Y + + ++ +P + HLN +K
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV-LRHLN-LKGN 456
Query: 870 SFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPAS 928
F + LL + SL L L CG+ I Q S+ + +DLS N+ S
Sbjct: 457 HFQD-GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC--DS 513
Query: 929 MKQLSRLRYLYL 940
+ LS L+ +YL
Sbjct: 514 IDSLSHLKGIYL 525
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 882 LLSGLC--SLTELDLKDCGIREIPQDIGSVFA-LEKIDLSGNNFETLPASMKQLSRLRYL 938
+L GLC S+ L+L++ +I F L+++DL+ + + LP+ MK L+ L+ L
Sbjct: 244 MLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKL 303
Query: 939 YL 940
L
Sbjct: 304 VL 305
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 849 ERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTL----LSGLCSLTELDLKDCGIREIPQ 904
E +S++P ++ + E SF LPT+ S L +LT LDL C I I +
Sbjct: 17 ENLGLSEIPDTLPNTTEFLEFSFN-----FLPTIHNRTFSRLMNLTFLDLTRCQINWIHE 71
Query: 905 D-IGSVFALEKIDLSGNNFETLP-ASMKQLSRLRYLYLI 941
D S L + L+GN + S+ L++L+LI
Sbjct: 72 DTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLI 110
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 877 LVLPTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLP-ASMKQLSR 934
+V PT GL L L L CG++E+ P + AL+ + L NN + LP + + L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 935 LRYLYL 940
L +L+L
Sbjct: 154 LTHLFL 159
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 6/212 (2%)
Query: 734 AIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEI-LEK 792
++ VP+ I + + + L + + + + S C+ ++ WL+ N + +++ L
Sbjct: 21 GLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTL 80
Query: 793 MERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSA 852
+E+L D + ++ + ++ L L L L C P L +L Y+ + +
Sbjct: 81 LEQLDLSDNAQLRVVD-PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN 139
Query: 853 ISQVP-ASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREI-PQDIGSV 909
+ +P + L + L G R +P GL SL L L + + P +
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDL 199
Query: 910 FALEKIDLSGNNFETLPAS-MKQLSRLRYLYL 940
L + L NN LPA + L L+YL L
Sbjct: 200 GRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 889 LTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLIN 942
LT L L + E+P +I ++ L +DLS N +LPA + +L+Y Y +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 853 ISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFAL 912
I + A+I + + L G LP + L +L LDL + +P ++GS F L
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
Query: 913 EKIDLSGNNFETLPASMKQLSRLRYL 938
+ N TLP L L++L
Sbjct: 296 KYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 792 KMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERS 851
K + L+ + L+ + EL + I +L LR L L ++L SLP LGS L Y +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN 303
Query: 852 AISQVPASIAHLNEVKSLSFAG 873
++ +P +L ++ L G
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEG 325
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 892 LDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYL 940
LDL + I I +I L ++ L+GN+ LPA +K LS LR L L
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 851 SAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVF 910
++++++PA I +L+ ++ L + R LP L L D + +P + G++
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
Query: 911 ALEKIDLSGNNFE 923
L+ + + GN E
Sbjct: 317 NLQFLGVEGNPLE 329
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 781 SKLESFP-EILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPEN-L 837
++L + P + E + +L + L I+ + S + + + LR L L E +L + E
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 838 GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR-NLVLPTLLSGLCSLTELDLKD 896
L +L Y+ + +P ++ L ++ L +G R +L+ P GL SL +L L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 897 CGIREIPQD-IGSVFALEKIDLSGNNFETLPASM-KQLSRLRYLYL 940
+ I ++ + +LE+++LS NN +LP + L RL ++L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 781 SKLESFP-EILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPEN-L 837
++L + P + E + +L + L I+ + S + + + LR L L E +L + E
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 838 GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR-NLVLPTLLSGLCSLTELDLKD 896
L +L Y+ + +P ++ L ++ L +G R +L+ P GL SL +L L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 897 CGIREIPQD-IGSVFALEKIDLSGNNFETLPASM-KQLSRLRYLYL 940
+ I ++ + +LE+++LS NN +LP + L RL ++L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 103/259 (39%), Gaps = 59/259 (22%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYL-NNCSKLESF 786
LDL + + E+PS + L+TL KL LS S SL L + N +LE
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 787 PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLG-----SLK 841
LE +E L +DLS I+ NL+LR S L SL NL SLK
Sbjct: 343 TGCLENLENLRELDLSHDDIET--------SDCCNLQLRNLSHLQSL--NLSYNEPLSLK 392
Query: 842 SLVYIEAERSAI------------SQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSL 889
+ + E + + +Q P HL +V +LS + ++ L GL +L
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPAL 451
Query: 890 TELDLKD---------------------------CGIREIPQD-IGSVFALEKIDLSGNN 921
L+L+ C + I Q S+ + +DLS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 922 FETLPASMKQLSRLRYLYL 940
+ +S++ LS L+ +YL
Sbjct: 512 LTS--SSIEALSHLKGIYL 528
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 31/236 (13%)
Query: 634 LKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFIN--LGVLCFRGCKS 691
LK +DL ++++ +PE + NL +L + + NF L LC +
Sbjct: 342 LKVLDLSFNEFSGELPE--SLTNLS-------ASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 692 LK-CFPHDIHFTSPIKIDISYCVNLTE----FPKISGNIIVLDLRDSAIEEVPSSIESLT 746
L+ + + FT I +S C L F +SG I PSS+ SL+
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-------------PSSLGSLS 439
Query: 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKI 806
L L L + + +++L L L+ P L L+++ LS ++
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 807 K-ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAI-SQVPASI 860
E+ I LE L LKL S ++P LG +SL++++ + +PA++
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 70/280 (25%)
Query: 707 IDISYCVNLTEFPKISGNIIVLD---LRD-SAIEEVPSSIESLTTLVKLDLSYCTRLKSL 762
+D+S CVNL EF +S N L D SA++ + S L+ +S CT LK L
Sbjct: 191 VDVSRCVNL-EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 763 STSICK---------LRSLYWLYLNNCSKLESFPEILEKM-ERLSYMDLSWTKI------ 806
+ S + L+SL +L L P+ L + L+ +DLS
Sbjct: 250 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 807 -------------------KELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIE 847
EL +D L ++R LK+ + +S E G L
Sbjct: 310 FFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLD----LSFNEFSGELPE----- 358
Query: 848 AERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLC-----SLTELDLKDCGIR-E 901
+++ + AS+ L ++ S +F+G +L LC +L EL L++ G +
Sbjct: 359 ----SLTNLSASLLTL-DLSSNNFSG-------PILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 902 IPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYL 940
IP + + L + LS N T+P+S+ LS+LR L L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 738 VPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLS 797
+PSS+ SL+ L L L + + +++L L L+ P L L+
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 798 YMDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAI-SQ 855
++ LS ++ E+ I LE L LKL S ++P LG +SL++++ +
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 856 VPASI 860
+PA++
Sbjct: 554 IPAAM 558
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 70/280 (25%)
Query: 707 IDISYCVNLTEFPKISGNIIVLD---LRD-SAIEEVPSSIESLTTLVKLDLSYCTRLKSL 762
+D+S CVNL EF +S N L D SA++ + S L+ +S CT LK L
Sbjct: 194 VDVSRCVNL-EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 763 STSICK---------LRSLYWLYLNNCSKLESFPEILEKM-ERLSYMDLSWTKI------ 806
+ S + L+SL +L L P+ L + L+ +DLS
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 807 -------------------KELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIE 847
EL +D L ++R LK+ + +S E G L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLD----LSFNEFSGELPE----- 361
Query: 848 AERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLC-----SLTELDLKDCGIR-E 901
+++ + AS+ L ++ S +F+G +L LC +L EL L++ G +
Sbjct: 362 ----SLTNLSASLLTL-DLSSNNFSG-------PILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 902 IPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYL 940
IP + + L + LS N T+P+S+ LS+LR L L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 892 LDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP-ASMKQLSRLRYLYL 940
LDL + I IP+D+ + AL++++++ N +++P +L+ L+Y++L
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ ++ EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877
RL L L C +L L + G+L L ++ + + +P L + L + R
Sbjct: 56 RLTQLNLDRC-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 878 VLPT-LLSGLCSLTELDLKDCGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
LP L GL L EL LK ++ +P + + LEK+ L+ N LPA +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ ++ EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877
RL L L C +L L + G+L L ++ + + +P L + L + R
Sbjct: 56 RLTQLNLDRC-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 878 VLPT-LLSGLCSLTELDLKDCGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
LP L GL L EL LK ++ +P + + LEK+ L+ N LPA +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ ++ EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ ++ EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 55 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 111
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ + EL + ++
Sbjct: 112 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 171 GLENLDTLLLQENS-LYTIPK 190
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877
RL L L C +L L + G+L L ++ + + +P L + L + R
Sbjct: 57 RLTQLNLDRC-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 114
Query: 878 VLPT-LLSGLCSLTELDLKDCGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
LP L GL L EL LK ++ +P + + LEK+ L+ NN LPA +
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ + EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877
RL L L C +L L + G+L L ++ + + +P L + L + R
Sbjct: 56 RLTQLNLDRC-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 878 VLPT-LLSGLCSLTELDLKDCGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
LP L GL L EL LK ++ +P + + LEK+ L+ NN LPA +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICK-LRSLYWLYLNNCSKLESF 786
LDL + ++ +P ++L L LD+S+ RL SL + L L LYL ++L++
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG-NELKTL 139
Query: 787 PE-ILEKMERLSYMDLSWTKIKELKSS-IDHLERLRNLKLRECSKLVSLPE 835
P +L +L + L+ + EL + ++ LE L L L+E S L ++P+
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPK 189
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 838 GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKD 896
G+L L ++ + + +P L + L + R LP L GL L EL LK
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 897 CGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
++ +P + + LEK+ L+ NN LPA +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICK-LRSLYWLYLNNCSKLESF 786
LDL + ++ +P ++L L LD+S+ RL SL + L L LYL ++L++
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG-NELKTL 139
Query: 787 PE-ILEKMERLSYMDLSWTKIKELKSS-IDHLERLRNLKLRECSKLVSLPE 835
P +L +L + L+ + EL + ++ LE L L L+E S L ++P+
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPK 189
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 838 GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKD 896
G+L L ++ + + +P L + L + R LP L GL L EL LK
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 897 CGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
++ +P + + LEK+ L+ NN LPA +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICK-LRSLYWLYLNNCSKLESF 786
LDL + ++ +P ++L L LD+S+ RL SL + L L LYL ++L++
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG-NELKTL 139
Query: 787 PE-ILEKMERLSYMDLSWTKIKELKSS-IDHLERLRNLKLRECSKLVSLPE 835
P +L +L + L+ + EL + ++ LE L L L+E S L ++P+
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPK 189
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 838 GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKD 896
G+L L ++ + + +P L + L + R LP L GL L EL LK
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 897 CGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
++ +P + + LEK+ L+ NN LPA +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 701 FTSPIKIDISYCVNLTEFPKISGNIIVL---DLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+T ++++ C LT+ ++ G + VL DL + ++ +P ++L L LD+S+
Sbjct: 54 YTRLTQLNLDRC-ELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-N 110
Query: 758 RLKSLSTSICK-LRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSS-ID 814
RL SL + L L LYL ++L++ P +L +L + L+ + EL + ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
Query: 815 HLERLRNLKLRECSKLVSLPE 835
LE L L L+E S L ++P+
Sbjct: 170 GLENLDTLLLQENS-LYTIPK 189
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877
RL L L C +L L + G+L L ++ + + +P L + L + R
Sbjct: 56 RLTQLNLDRC-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 878 VLPT-LLSGLCSLTELDLKDCGIREIPQDIGS-VFALEKIDLSGNNFETLPASM 929
LP L GL L EL LK ++ +P + + LEK+ L+ N+ LPA +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 830 LVSLPENLGSLKSLVYIEAERSAISQVPASIAHLN----------EVKS-LSFAGCRNLV 878
L+SLPE SL+ L + S + ++PAS+ HL+ E+ + L + N
Sbjct: 92 LISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXLPELPALLEYINADNNQ 151
Query: 879 LPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPA 927
L L SL L +++ + +P+ S LE +D+S N E+LPA
Sbjct: 152 LTXLPELPTSLEVLSVRNNQLTFLPELPES---LEALDVSTNLLESLPA 197
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 611 LIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINL 662
L LNL + ++Q+ +G KL+ +DL S L R P+P E+P ++ + L
Sbjct: 253 LNSLNLSFAGLEQVPKGLPA--KLRVLDLS-SNRLNRAPQPDELPEVDNLTL 301
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLES 785
I D + +VP I S T + L + LKS S S L WL L+ C
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCE---- 67
Query: 786 FPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVY 845
+E +E D +W + L + I +++ S L SL++LV
Sbjct: 68 ----IETIE-----DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-------SLENLVA 111
Query: 846 IEAERSAISQVPASIAHLNEVKSLSFA-----GCRNLVLPTLLSGLCSLTELDLKDCGIR 900
+E + +++ P I L +K L+ A C+ LP S L +L +DL I+
Sbjct: 112 VETKLASLESFP--IGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQ 166
Query: 901 EI 902
I
Sbjct: 167 TI 168
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 829 KLVSLPENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVLPT-LLSGL 886
+L S+P + + K +++ + I+++ P HL ++ L F + +PT + L
Sbjct: 23 RLASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 887 CSLTELDLKDCGIREIPQ 904
LT+LDL D ++ IP+
Sbjct: 81 TQLTQLDLNDNHLKSIPR 98
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 303 LDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNGLENHEAFKLFC 362
+D+ + L + A +D+ G ++T ++D FG+ + ++ GL++ AF+ FC
Sbjct: 233 FEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVDGFGM-KVSRIGGLQHMRAFRDFC 291
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLES 785
I D + +VP I S T + L + LKS S S L WL L+ C
Sbjct: 9 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCE---- 62
Query: 786 FPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVY 845
+E +E D +W + L + I +++ S L SL++LV
Sbjct: 63 ----IETIE-----DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-------SLENLVA 106
Query: 846 IEAERSAISQVPASIAHLNEVKSLSFA-----GCRNLVLPTLLSGLCSLTELDLKDCGIR 900
+E + +++ P I L +K L+ A C+ LP S L +L +DL I+
Sbjct: 107 VETKLASLESFP--IGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQ 161
Query: 901 EI 902
I
Sbjct: 162 TI 163
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 656 NLEKINLWNCTNLAYIPCNIQNFINLGV-----LCFRGCKSLKCFPHDIHFTSPI----- 705
N+ ++L TNL Y+ C+ NL V L + C + K D+ +P+
Sbjct: 75 NITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS-QNPLLTYLN 133
Query: 706 -------KIDISYCVNLTEFP-KISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCT 757
+ID+S+ LTE ++ I LD + T L LD S+
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKITKLD------------VTPQTQLTTLDCSF-N 180
Query: 758 RLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLE 817
++ L S KL + NN +KL+ L + +L+++D S K+ E+ +
Sbjct: 181 KITELDVSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID-----VT 230
Query: 818 RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR 875
L L +CS ++ +L L + ++ + ++ + H ++ GCR
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCR 286
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 596 GYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPE---PS 652
G PL ++ N L E+ P + +K E K + L SIDLR+++ LT++ + +
Sbjct: 456 GSPLSSI--NLXGNXLTEI--PKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRAT 510
Query: 653 EIPNLEKINL-WNC-TNLAYIPCNIQNFINLGVLCFR---GCKSLKCFPHDIHFT---SP 704
+P L I+L +N + P N G+ R G ++L+ +P I +
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 705 IKIDISYCVNLTEFPKISGNIIVLDLRDS 733
++I + + E KI+ NI VLD++D+
Sbjct: 571 LQIGSNDIRKVNE--KITPNISVLDIKDN 597
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 856 VPASIAHLNEVKSLSFAGCRNLV--LPTLLSGLCSLTELDLKDCGIR-EIPQDIGSVFAL 912
+P+S+A+L + L G NLV +P ++ L L L + + IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 913 EKIDLSGNNFE-TLPASMKQLSRL 935
+D S N TLP S+ L L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNL 151
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 727 VLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLR-SLYWLYLNNCSKLES 785
+L+LR + + + S T V LD+ +++ CK+ ++WL L NC+ E+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ------CKMDFKIFWLNLKNCNSPET 197
Query: 786 FPEILEKMERLSYMDLSWTKIKELKSSI 813
E+L+K+ L +D +WT + S+I
Sbjct: 198 VLEMLQKL--LYQIDPNWTSRSDHSSNI 223
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 718 FPKISGNIIVLDLRDSAIEEVPSSI-ESLTTLVKLDLSYCTRLKSLSTSI----CKLRSL 772
F K++ N+ L+L + ++ +P + + LT L +LDLSY +L+SL + +L+ L
Sbjct: 129 FDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDL 186
Query: 773 YWLYLNNCSKLESFPE-ILEKMERLSYM 799
LY N +L+S P+ + +++ L Y+
Sbjct: 187 R-LYQN---QLKSVPDGVFDRLTSLQYI 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,151,563
Number of Sequences: 62578
Number of extensions: 1161299
Number of successful extensions: 2913
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2764
Number of HSP's gapped (non-prelim): 194
length of query: 1007
length of database: 14,973,337
effective HSP length: 108
effective length of query: 899
effective length of database: 8,214,913
effective search space: 7385206787
effective search space used: 7385206787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)