Query 037332
Match_columns 1007
No_of_seqs 779 out of 5881
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-128 7E-133 1213.3 84.5 892 1-949 1-909 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.1E-62 2E-66 576.1 31.9 596 196-923 161-807 (889)
3 PLN03194 putative disease resi 100.0 8.9E-40 1.9E-44 303.9 16.2 154 14-184 22-178 (187)
4 PLN00113 leucine-rich repeat r 100.0 1.8E-37 3.9E-42 393.5 29.0 444 537-983 71-573 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 1E-37 2.2E-42 338.0 15.9 264 198-466 1-281 (287)
6 PLN00113 leucine-rich repeat r 100.0 6.3E-36 1.4E-40 379.3 26.9 428 540-971 145-588 (968)
7 KOG0444 Cytoskeletal regulator 100.0 3.3E-32 7.2E-37 289.3 -3.4 358 590-971 10-379 (1255)
8 KOG4194 Membrane glycoprotein 100.0 7.4E-31 1.6E-35 277.9 6.1 357 585-961 76-446 (873)
9 KOG0472 Leucine-rich repeat pr 100.0 3E-32 6.6E-37 276.3 -12.0 384 553-946 85-541 (565)
10 KOG0444 Cytoskeletal regulator 100.0 8.7E-31 1.9E-35 278.6 -2.5 364 562-950 10-379 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 2.8E-31 6.1E-36 269.3 -13.3 427 553-990 39-540 (565)
12 KOG4194 Membrane glycoprotein 99.9 8.5E-29 1.8E-33 262.4 4.3 365 539-929 82-464 (873)
13 KOG0618 Serine/threonine phosp 99.9 4.1E-29 8.9E-34 279.5 -4.4 405 552-967 38-489 (1081)
14 PLN03210 Resistant to P. syrin 99.9 2E-24 4.4E-29 273.3 25.1 324 654-1007 610-972 (1153)
15 KOG0618 Serine/threonine phosp 99.9 6.8E-26 1.5E-30 253.9 -5.7 360 588-961 46-459 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 4E-24 210.5 16.5 261 589-951 203-463 (788)
17 PRK15387 E3 ubiquitin-protein 99.8 3.7E-19 7.9E-24 208.0 16.8 263 560-929 202-465 (788)
18 PF01582 TIR: TIR domain; Int 99.8 7.7E-20 1.7E-24 173.3 2.4 132 21-152 1-140 (141)
19 smart00255 TIR Toll - interleu 99.8 5.9E-18 1.3E-22 161.3 12.1 136 18-155 1-138 (140)
20 PRK15370 E3 ubiquitin-protein 99.7 4.2E-17 9.1E-22 192.5 13.4 247 655-946 178-428 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 188.6 13.5 226 703-951 179-405 (754)
22 KOG4237 Extracellular matrix p 99.7 6.5E-18 1.4E-22 172.7 -1.1 372 582-959 62-490 (498)
23 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 149.7 -4.7 179 769-949 32-215 (264)
24 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 146.5 -5.5 179 742-922 29-211 (264)
25 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-15 3.8E-20 167.2 3.3 206 739-944 74-318 (319)
26 KOG4237 Extracellular matrix p 99.5 5.8E-16 1.3E-20 158.6 -0.9 245 714-958 57-347 (498)
27 cd00116 LRR_RI Leucine-rich re 99.5 2.7E-14 5.9E-19 157.7 5.2 225 724-948 24-293 (319)
28 PF13676 TIR_2: TIR domain; PD 99.4 4.9E-14 1.1E-18 125.6 4.1 87 21-113 1-87 (102)
29 PRK04841 transcriptional regul 99.4 2.6E-11 5.5E-16 153.9 26.3 297 188-505 9-335 (903)
30 PRK00411 cdc6 cell division co 99.2 1E-09 2.2E-14 124.6 23.6 282 190-483 27-358 (394)
31 KOG0532 Leucine-rich repeat (L 99.2 1.6E-12 3.4E-17 139.8 -0.9 223 729-957 56-283 (722)
32 TIGR02928 orc1/cdc6 family rep 99.2 4.5E-09 9.8E-14 118.0 24.0 284 189-483 11-350 (365)
33 PF01637 Arch_ATPase: Archaeal 99.1 2.1E-10 4.5E-15 120.4 10.6 195 195-395 1-233 (234)
34 KOG4658 Apoptotic ATPase [Sign 99.1 6.1E-11 1.3E-15 143.0 7.0 123 559-687 523-650 (889)
35 TIGR00635 ruvB Holliday juncti 99.1 1.4E-09 3.1E-14 118.5 17.1 266 193-487 4-293 (305)
36 KOG0532 Leucine-rich repeat (L 99.1 4.8E-12 1E-16 136.2 -3.5 191 769-964 74-270 (722)
37 PF05729 NACHT: NACHT domain 99.1 9.2E-10 2E-14 108.4 12.7 143 217-365 1-163 (166)
38 KOG1259 Nischarin, modulator o 99.1 2.7E-11 5.8E-16 119.9 0.6 131 816-949 283-415 (490)
39 COG4886 Leucine-rich repeat (L 99.1 2.2E-10 4.8E-15 130.2 8.0 197 750-950 97-294 (394)
40 COG2909 MalT ATP-dependent tra 99.1 8.9E-09 1.9E-13 117.6 19.9 294 188-505 14-341 (894)
41 KOG3207 Beta-tubulin folding c 99.0 7.8E-11 1.7E-15 123.3 2.5 201 724-947 122-340 (505)
42 PRK00080 ruvB Holliday junctio 99.0 1.9E-09 4E-14 118.2 13.2 274 190-486 22-313 (328)
43 KOG3207 Beta-tubulin folding c 99.0 8.7E-11 1.9E-15 122.9 2.3 177 768-945 119-313 (505)
44 TIGR03015 pepcterm_ATPase puta 99.0 2E-08 4.4E-13 107.5 20.5 178 216-400 43-242 (269)
45 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.8E-15 115.2 0.8 134 791-927 281-416 (490)
46 KOG1909 Ran GTPase-activating 99.0 1.4E-10 3E-15 118.3 0.9 224 722-945 29-310 (382)
47 COG4886 Leucine-rich repeat (L 99.0 8.2E-10 1.8E-14 125.5 7.3 176 724-926 117-293 (394)
48 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 105.0 4.6 104 842-947 20-127 (175)
49 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 103.8 4.5 123 818-943 20-150 (175)
50 COG2256 MGS1 ATPase related to 98.8 2.5E-08 5.5E-13 104.5 12.4 164 194-390 31-206 (436)
51 COG3899 Predicted ATPase [Gene 98.8 1.5E-07 3.2E-12 114.6 19.7 306 194-505 1-389 (849)
52 KOG1909 Ran GTPase-activating 98.8 6.3E-10 1.4E-14 113.6 -1.1 179 744-922 90-310 (382)
53 PRK06893 DNA replication initi 98.8 1.3E-07 2.8E-12 97.5 15.3 148 216-394 39-201 (229)
54 PTZ00112 origin recognition co 98.7 3.6E-07 7.7E-12 105.4 16.8 244 188-443 750-1027(1164)
55 COG3903 Predicted ATPase [Gene 98.6 7.5E-08 1.6E-12 101.9 8.5 280 215-504 13-316 (414)
56 TIGR03420 DnaA_homol_Hda DnaA 98.6 8.3E-07 1.8E-11 92.2 15.0 172 193-397 15-202 (226)
57 PRK13342 recombination factor 98.5 8.9E-07 1.9E-11 100.2 13.8 176 191-396 10-196 (413)
58 PTZ00202 tuzin; Provisional 98.5 1.1E-05 2.4E-10 86.7 20.1 180 173-364 237-433 (550)
59 PF13173 AAA_14: AAA domain 98.5 5.7E-07 1.2E-11 83.6 9.1 120 216-357 2-127 (128)
60 PRK08727 hypothetical protein; 98.5 3.8E-06 8.2E-11 86.9 15.3 144 217-391 42-199 (233)
61 TIGR01242 26Sp45 26S proteasom 98.5 6.1E-07 1.3E-11 99.9 10.0 173 192-390 121-328 (364)
62 PRK00440 rfc replication facto 98.5 4.8E-06 1E-10 91.7 17.1 179 192-392 16-199 (319)
63 KOG3678 SARM protein (with ste 98.4 8.3E-07 1.8E-11 93.3 10.1 92 16-113 610-710 (832)
64 PF05496 RuvB_N: Holliday junc 98.4 2.3E-06 5E-11 84.2 11.9 176 189-396 20-221 (233)
65 PRK12402 replication factor C 98.4 4.7E-06 1E-10 92.6 16.3 195 191-393 13-223 (337)
66 PRK14963 DNA polymerase III su 98.4 8.1E-06 1.8E-10 93.4 17.6 189 191-393 12-214 (504)
67 PRK14961 DNA polymerase III su 98.4 1.4E-05 3.1E-10 88.6 19.2 179 190-392 13-216 (363)
68 PLN03025 replication factor C 98.4 2.9E-06 6.3E-11 92.6 13.4 180 190-390 10-194 (319)
69 PRK07003 DNA polymerase III su 98.4 1.4E-05 3E-10 92.4 19.2 190 190-395 13-220 (830)
70 PRK04195 replication factor C 98.4 9.2E-06 2E-10 93.9 18.2 177 191-393 12-199 (482)
71 PRK07471 DNA polymerase III su 98.4 3E-05 6.5E-10 85.1 21.1 198 188-397 14-239 (365)
72 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 73.4 3.3 59 887-945 1-61 (61)
73 PF13191 AAA_16: AAA ATPase do 98.4 8.6E-07 1.9E-11 88.9 8.4 50 194-243 1-51 (185)
74 PRK15386 type III secretion pr 98.4 1.4E-06 2.9E-11 94.4 10.1 63 766-834 48-111 (426)
75 PF00308 Bac_DnaA: Bacterial d 98.4 7.9E-06 1.7E-10 83.4 15.1 159 215-394 33-206 (219)
76 PRK08903 DnaA regulatory inact 98.4 4.7E-06 1E-10 86.4 13.7 172 193-400 18-203 (227)
77 PRK09087 hypothetical protein; 98.4 3.2E-06 6.9E-11 86.5 12.1 138 216-395 44-194 (226)
78 PLN03150 hypothetical protein; 98.4 7.9E-07 1.7E-11 105.8 8.7 110 842-951 419-533 (623)
79 PRK14960 DNA polymerase III su 98.4 1.9E-05 4.2E-10 90.3 19.2 178 190-391 12-214 (702)
80 cd00009 AAA The AAA+ (ATPases 98.3 4.7E-06 1E-10 80.1 11.8 123 196-336 1-131 (151)
81 KOG2028 ATPase related to the 98.3 8.6E-06 1.9E-10 83.9 13.5 153 214-390 160-330 (554)
82 COG1474 CDC6 Cdc6-related prot 98.3 1.5E-05 3.3E-10 87.2 16.5 201 189-396 13-238 (366)
83 PRK14949 DNA polymerase III su 98.3 9.3E-06 2E-10 95.8 15.6 181 190-391 13-215 (944)
84 PRK05564 DNA polymerase III su 98.3 2E-05 4.4E-10 85.8 17.5 177 193-396 4-190 (313)
85 KOG0531 Protein phosphatase 1, 98.3 6.2E-08 1.3E-12 110.1 -2.5 222 721-950 93-322 (414)
86 PF13401 AAA_22: AAA domain; P 98.3 2.4E-06 5.2E-11 80.1 8.8 113 216-334 4-125 (131)
87 PRK05642 DNA replication initi 98.3 1.4E-05 3.1E-10 82.6 15.1 148 216-394 45-206 (234)
88 KOG4341 F-box protein containi 98.3 4.6E-08 1E-12 102.4 -3.4 257 652-947 161-440 (483)
89 PRK08084 DNA replication initi 98.3 1.3E-05 2.8E-10 83.0 14.5 148 216-394 45-207 (235)
90 PF14516 AAA_35: AAA-like doma 98.3 0.00019 4.1E-09 78.5 24.1 206 188-403 6-246 (331)
91 KOG2120 SCF ubiquitin ligase, 98.3 2.8E-08 6.1E-13 99.1 -5.3 153 790-943 206-373 (419)
92 PRK13341 recombination factor 98.3 7.4E-06 1.6E-10 97.4 13.9 169 191-390 26-211 (725)
93 PLN03150 hypothetical protein; 98.3 1.6E-06 3.5E-11 103.2 8.3 90 748-837 420-510 (623)
94 PRK14956 DNA polymerase III su 98.2 4.8E-05 1E-09 84.8 18.6 192 190-390 15-216 (484)
95 PRK12323 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.6 14.9 192 190-393 13-222 (700)
96 PRK07940 DNA polymerase III su 98.2 2.3E-05 4.9E-10 86.8 15.8 177 193-396 5-213 (394)
97 TIGR02397 dnaX_nterm DNA polym 98.2 3.8E-05 8.1E-10 86.0 17.7 183 190-396 11-218 (355)
98 PRK14962 DNA polymerase III su 98.2 2.8E-05 6.1E-10 88.3 16.2 186 189-398 10-221 (472)
99 PRK14087 dnaA chromosomal repl 98.2 2.6E-05 5.6E-10 88.5 15.9 164 216-397 141-320 (450)
100 PRK14957 DNA polymerase III su 98.2 1.6E-05 3.6E-10 91.0 14.3 182 190-396 13-221 (546)
101 KOG0531 Protein phosphatase 1, 98.2 3.4E-07 7.4E-12 104.1 0.7 212 727-946 76-290 (414)
102 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 69.0 3.7 59 864-922 1-61 (61)
103 KOG2227 Pre-initiation complex 98.2 7.1E-05 1.5E-09 80.5 17.7 203 190-397 147-373 (529)
104 KOG2120 SCF ubiquitin ligase, 98.2 1E-07 2.2E-12 95.2 -3.4 177 724-920 186-373 (419)
105 PRK03992 proteasome-activating 98.2 1.2E-05 2.6E-10 89.8 12.2 172 192-390 130-337 (389)
106 KOG2982 Uncharacterized conser 98.2 1.3E-06 2.8E-11 87.5 3.9 180 744-923 69-262 (418)
107 PRK09112 DNA polymerase III su 98.2 2.9E-05 6.2E-10 84.8 14.7 198 187-397 17-241 (351)
108 KOG1859 Leucine-rich repeat pr 98.2 4.7E-08 1E-12 108.7 -7.0 195 745-946 83-292 (1096)
109 PRK06645 DNA polymerase III su 98.2 4.1E-05 8.9E-10 87.2 16.2 189 190-391 18-224 (507)
110 PRK08691 DNA polymerase III su 98.2 3.4E-05 7.3E-10 89.3 15.5 192 190-392 13-216 (709)
111 PRK05896 DNA polymerase III su 98.1 3.3E-05 7.1E-10 88.5 15.0 195 189-397 12-222 (605)
112 KOG2982 Uncharacterized conser 98.1 1.3E-06 2.7E-11 87.5 3.1 197 769-965 70-287 (418)
113 PRK15386 type III secretion pr 98.1 1.2E-05 2.6E-10 87.3 10.5 28 703-731 53-80 (426)
114 KOG4341 F-box protein containi 98.1 1.7E-07 3.8E-12 98.2 -4.0 103 815-917 344-459 (483)
115 PRK14964 DNA polymerase III su 98.1 7.3E-05 1.6E-09 84.4 16.3 178 190-391 10-212 (491)
116 PRK14955 DNA polymerase III su 98.1 9.3E-05 2E-09 83.2 17.1 195 189-392 12-224 (397)
117 TIGR02881 spore_V_K stage V sp 98.1 3.8E-05 8.3E-10 81.2 13.1 153 194-366 7-192 (261)
118 TIGR00678 holB DNA polymerase 98.1 0.00012 2.5E-09 73.4 15.9 89 296-392 95-187 (188)
119 PRK14088 dnaA chromosomal repl 98.1 8.8E-05 1.9E-09 84.2 16.6 156 216-391 130-300 (440)
120 PRK14958 DNA polymerase III su 98.1 0.00016 3.4E-09 83.2 18.7 179 190-392 13-216 (509)
121 TIGR00362 DnaA chromosomal rep 98.0 8.4E-05 1.8E-09 84.3 15.8 156 216-392 136-306 (405)
122 PRK07994 DNA polymerase III su 98.0 8E-05 1.7E-09 86.8 15.6 189 190-392 13-216 (647)
123 PRK14970 DNA polymerase III su 98.0 7.3E-05 1.6E-09 83.7 15.0 180 189-391 13-204 (367)
124 TIGR02903 spore_lon_C ATP-depe 98.0 4.5E-05 9.7E-10 90.1 13.7 172 189-365 150-366 (615)
125 PRK14951 DNA polymerase III su 98.0 0.00012 2.6E-09 85.1 16.8 187 190-392 13-221 (618)
126 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00011 2.3E-09 90.1 16.9 196 170-389 168-389 (852)
127 KOG1859 Leucine-rich repeat pr 98.0 2.4E-07 5.2E-12 103.2 -5.6 192 769-965 83-290 (1096)
128 PRK00149 dnaA chromosomal repl 98.0 9E-05 1.9E-09 85.1 14.8 156 216-392 148-318 (450)
129 TIGR02639 ClpA ATP-dependent C 98.0 0.0001 2.2E-09 89.8 15.9 169 171-365 164-358 (731)
130 PRK14969 DNA polymerase III su 98.0 0.00011 2.5E-09 85.0 15.5 178 190-391 13-215 (527)
131 PRK12422 chromosomal replicati 98.0 0.00013 2.9E-09 82.4 15.6 152 216-389 141-306 (445)
132 PHA02544 44 clamp loader, smal 98.0 8.1E-05 1.7E-09 81.7 13.5 149 190-363 18-171 (316)
133 PF12799 LRR_4: Leucine Rich r 98.0 9.6E-06 2.1E-10 58.3 4.1 39 888-926 2-40 (44)
134 PRK09376 rho transcription ter 98.0 1.7E-05 3.6E-10 85.2 7.5 93 215-310 168-269 (416)
135 KOG0989 Replication factor C, 98.0 9E-05 2E-09 75.4 12.2 191 189-397 32-232 (346)
136 PRK06620 hypothetical protein; 98.0 8E-05 1.7E-09 75.6 12.2 130 217-390 45-183 (214)
137 PRK14954 DNA polymerase III su 98.0 0.00023 4.9E-09 83.2 17.5 194 190-391 13-223 (620)
138 PRK14952 DNA polymerase III su 98.0 0.0003 6.4E-09 81.7 18.2 186 191-398 11-222 (584)
139 PRK09111 DNA polymerase III su 97.9 0.00029 6.2E-09 82.3 17.7 193 190-394 21-231 (598)
140 PRK07133 DNA polymerase III su 97.9 0.00016 3.4E-09 84.8 15.4 191 191-396 16-220 (725)
141 PRK14959 DNA polymerase III su 97.9 0.00023 4.9E-09 82.3 16.4 185 191-400 14-225 (624)
142 KOG4579 Leucine-rich repeat (L 97.9 9.3E-07 2E-11 78.2 -2.3 104 843-946 29-136 (177)
143 PTZ00361 26 proteosome regulat 97.9 4E-05 8.7E-10 85.6 9.8 153 193-367 183-369 (438)
144 PRK06305 DNA polymerase III su 97.9 0.00028 6.1E-09 80.1 16.8 184 190-396 14-223 (451)
145 PRK14086 dnaA chromosomal repl 97.9 0.00029 6.3E-09 81.0 16.7 153 217-390 315-482 (617)
146 PTZ00454 26S protease regulato 97.9 9.7E-05 2.1E-09 82.1 12.2 173 192-390 144-351 (398)
147 TIGR03689 pup_AAA proteasome A 97.9 0.00013 2.9E-09 82.6 13.5 157 192-365 181-378 (512)
148 PRK14950 DNA polymerase III su 97.9 0.00045 9.8E-09 81.6 18.3 191 191-394 14-219 (585)
149 PRK07764 DNA polymerase III su 97.9 0.00048 1E-08 83.3 18.4 186 191-391 13-216 (824)
150 COG1222 RPT1 ATP-dependent 26S 97.9 0.00038 8.2E-09 72.6 14.9 193 193-415 151-392 (406)
151 COG2255 RuvB Holliday junction 97.8 0.00028 6.1E-09 71.1 13.4 263 189-488 22-316 (332)
152 PRK10865 protein disaggregatio 97.8 0.00049 1.1E-08 84.7 18.7 170 171-365 160-354 (857)
153 cd01128 rho_factor Transcripti 97.8 2.2E-05 4.7E-10 81.1 5.8 92 216-310 16-116 (249)
154 PRK08451 DNA polymerase III su 97.8 0.00035 7.6E-09 79.8 15.7 181 190-393 11-215 (535)
155 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.3E-10 95.7 3.4 149 794-943 122-285 (699)
156 PRK08116 hypothetical protein; 97.8 0.00013 2.8E-09 76.9 10.9 102 217-335 115-221 (268)
157 KOG4579 Leucine-rich repeat (L 97.8 1.2E-06 2.6E-11 77.5 -3.6 112 838-949 50-162 (177)
158 TIGR02880 cbbX_cfxQ probable R 97.8 0.00031 6.8E-09 74.8 13.7 128 218-365 60-208 (284)
159 PRK14953 DNA polymerase III su 97.8 0.00074 1.6E-08 77.3 17.4 189 191-394 14-218 (486)
160 PRK07952 DNA replication prote 97.8 0.00083 1.8E-08 69.2 16.0 36 216-251 99-134 (244)
161 PF08937 DUF1863: MTH538 TIR-l 97.8 5.3E-05 1.1E-09 70.3 6.3 88 19-111 1-106 (130)
162 PRK14971 DNA polymerase III su 97.7 0.00081 1.8E-08 79.2 17.6 177 190-391 14-217 (614)
163 PRK12377 putative replication 97.7 0.0007 1.5E-08 69.9 14.5 36 216-251 101-136 (248)
164 CHL00176 ftsH cell division pr 97.7 0.00047 1E-08 81.2 14.7 173 192-389 182-387 (638)
165 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0012 2.7E-08 81.6 19.0 168 171-364 155-348 (852)
166 PRK14948 DNA polymerase III su 97.7 0.0009 1.9E-08 78.8 16.9 193 190-394 13-220 (620)
167 CHL00181 cbbX CbbX; Provisiona 97.7 0.0016 3.5E-08 69.3 17.2 130 217-366 60-210 (287)
168 TIGR00767 rho transcription te 97.7 0.0001 2.2E-09 79.7 7.9 93 215-310 167-268 (415)
169 CHL00095 clpC Clp protease ATP 97.7 0.00081 1.7E-08 83.0 16.9 168 171-363 161-352 (821)
170 COG0466 Lon ATP-dependent Lon 97.7 0.0021 4.6E-08 73.3 18.0 159 193-365 323-508 (782)
171 PRK05563 DNA polymerase III su 97.6 0.0016 3.4E-08 76.2 17.8 188 189-391 12-215 (559)
172 PF12799 LRR_4: Leucine Rich r 97.6 6.7E-05 1.5E-09 53.9 3.9 37 910-946 1-37 (44)
173 PF00004 AAA: ATPase family as 97.6 0.00037 8.1E-09 65.2 10.2 23 219-241 1-23 (132)
174 PRK06647 DNA polymerase III su 97.6 0.0016 3.4E-08 75.9 17.1 189 190-392 13-216 (563)
175 COG0593 DnaA ATPase involved i 97.6 0.0013 2.9E-08 71.8 15.3 133 215-366 112-258 (408)
176 TIGR01241 FtsH_fam ATP-depende 97.6 0.00037 8E-09 81.1 11.9 174 192-390 54-260 (495)
177 COG5238 RNA1 Ran GTPase-activa 97.6 4E-05 8.7E-10 76.0 3.2 181 766-946 26-255 (388)
178 KOG2543 Origin recognition com 97.6 0.001 2.2E-08 70.0 13.4 163 191-364 4-192 (438)
179 PRK05707 DNA polymerase III su 97.6 0.0021 4.5E-08 69.8 16.4 94 297-396 106-203 (328)
180 PRK14965 DNA polymerase III su 97.5 0.00094 2E-08 78.5 14.3 184 190-396 13-221 (576)
181 COG5238 RNA1 Ran GTPase-activa 97.5 9.5E-05 2.1E-09 73.5 4.8 206 742-948 26-287 (388)
182 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.7E-08 73.7 14.3 162 200-395 24-191 (398)
183 PRK07399 DNA polymerase III su 97.5 0.0037 7.9E-08 67.5 16.8 191 193-395 4-220 (314)
184 PRK08181 transposase; Validate 97.5 0.00033 7.1E-09 73.3 8.5 98 217-335 107-209 (269)
185 PRK11034 clpA ATP-dependent Cl 97.5 0.0011 2.4E-08 79.7 13.7 170 171-365 168-362 (758)
186 PRK06526 transposase; Provisio 97.5 0.00081 1.7E-08 70.0 11.0 28 216-243 98-125 (254)
187 KOG3665 ZYG-1-like serine/thre 97.5 4.6E-05 9.9E-10 90.4 1.9 107 793-901 147-264 (699)
188 CHL00195 ycf46 Ycf46; Provisio 97.5 0.003 6.4E-08 72.1 16.2 175 193-390 228-429 (489)
189 PF05673 DUF815: Protein of un 97.4 0.011 2.3E-07 59.7 18.1 53 190-243 24-79 (249)
190 PRK10536 hypothetical protein; 97.4 0.001 2.2E-08 67.9 10.8 50 193-246 55-106 (262)
191 PRK09183 transposase/IS protei 97.4 0.00061 1.3E-08 71.5 8.9 26 217-242 103-128 (259)
192 TIGR00602 rad24 checkpoint pro 97.3 0.0011 2.3E-08 77.6 11.2 53 189-241 80-135 (637)
193 PF01695 IstB_IS21: IstB-like 97.3 0.0003 6.5E-09 69.1 5.3 36 216-251 47-82 (178)
194 TIGR01243 CDC48 AAA family ATP 97.3 0.0031 6.6E-08 77.3 15.3 174 192-390 177-381 (733)
195 PRK06835 DNA replication prote 97.3 0.001 2.2E-08 71.8 9.8 35 217-251 184-218 (329)
196 TIGR01243 CDC48 AAA family ATP 97.3 0.0024 5.1E-08 78.3 14.1 172 193-390 453-657 (733)
197 smart00382 AAA ATPases associa 97.3 0.0008 1.7E-08 63.8 8.0 28 217-244 3-30 (148)
198 TIGR02639 ClpA ATP-dependent C 97.3 0.0036 7.8E-08 76.4 15.3 48 193-240 454-508 (731)
199 KOG2004 Mitochondrial ATP-depe 97.3 0.0019 4.1E-08 73.2 11.4 155 193-365 411-596 (906)
200 PRK08939 primosomal protein Dn 97.2 0.0019 4.1E-08 69.3 10.7 98 216-333 156-259 (306)
201 PRK08769 DNA polymerase III su 97.2 0.015 3.2E-07 62.5 16.9 94 296-397 112-209 (319)
202 KOG1644 U2-associated snRNP A' 97.2 0.00058 1.3E-08 65.3 5.3 102 841-943 42-150 (233)
203 COG3267 ExeA Type II secretory 97.2 0.018 4E-07 57.8 15.9 179 214-398 49-247 (269)
204 PLN00020 ribulose bisphosphate 97.2 0.0072 1.6E-07 64.5 13.9 30 214-243 146-175 (413)
205 COG1223 Predicted ATPase (AAA+ 97.2 0.0049 1.1E-07 61.3 11.7 173 192-390 120-319 (368)
206 PF08357 SEFIR: SEFIR domain; 97.2 0.00048 1E-08 66.0 4.8 64 20-83 2-70 (150)
207 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0013 2.8E-08 68.2 8.2 93 216-311 69-177 (274)
208 PRK06921 hypothetical protein; 97.2 0.0014 3E-08 69.0 8.6 36 216-251 117-153 (266)
209 KOG1644 U2-associated snRNP A' 97.2 0.0007 1.5E-08 64.8 5.6 104 586-689 41-150 (233)
210 KOG0728 26S proteasome regulat 97.1 0.022 4.7E-07 56.3 15.8 143 197-365 151-331 (404)
211 TIGR00763 lon ATP-dependent pr 97.1 0.019 4E-07 70.7 19.5 52 193-244 320-375 (775)
212 PRK10787 DNA-binding ATP-depen 97.1 0.017 3.8E-07 70.2 18.6 52 193-244 322-377 (784)
213 PF05621 TniB: Bacterial TniB 97.1 0.0097 2.1E-07 62.1 14.0 197 193-393 34-258 (302)
214 PRK06871 DNA polymerase III su 97.1 0.017 3.6E-07 62.3 16.2 91 296-393 106-200 (325)
215 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0037 8.1E-08 69.6 10.9 53 192-244 189-251 (802)
216 PRK06090 DNA polymerase III su 97.0 0.062 1.3E-06 57.8 19.9 91 296-396 107-201 (319)
217 PRK11331 5-methylcytosine-spec 97.0 0.0015 3.2E-08 72.2 7.7 54 193-250 175-230 (459)
218 TIGR02640 gas_vesic_GvpN gas v 97.0 0.013 2.8E-07 62.0 14.6 35 202-240 11-45 (262)
219 PRK10865 protein disaggregatio 97.0 0.01 2.2E-07 73.3 15.9 50 193-242 568-624 (857)
220 KOG0991 Replication factor C, 97.0 0.0045 9.8E-08 60.4 9.8 48 192-241 26-73 (333)
221 KOG0735 AAA+-type ATPase [Post 97.0 0.011 2.4E-07 67.1 14.2 154 216-389 431-608 (952)
222 PHA00729 NTP-binding motif con 97.0 0.0031 6.7E-08 63.3 9.0 27 215-241 16-42 (226)
223 PRK08058 DNA polymerase III su 97.0 0.014 3.1E-07 63.7 15.0 146 194-364 6-181 (329)
224 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0037 8E-08 76.9 11.4 51 193-243 566-623 (852)
225 KOG0741 AAA+-type ATPase [Post 97.0 0.022 4.8E-07 62.5 15.7 130 214-364 536-685 (744)
226 PRK12608 transcription termina 97.0 0.0031 6.7E-08 68.1 9.1 102 204-309 122-232 (380)
227 KOG1514 Origin recognition com 96.9 0.032 7E-07 63.8 17.1 167 190-365 393-589 (767)
228 PRK07993 DNA polymerase III su 96.9 0.02 4.3E-07 62.4 15.3 163 201-394 10-202 (334)
229 COG1484 DnaC DNA replication p 96.9 0.003 6.4E-08 65.9 8.6 74 215-307 104-177 (254)
230 KOG0730 AAA+-type ATPase [Post 96.9 0.007 1.5E-07 68.6 11.8 171 193-390 434-637 (693)
231 COG0542 clpA ATP-binding subun 96.9 0.0057 1.2E-07 72.1 11.5 119 193-321 491-619 (786)
232 PF04665 Pox_A32: Poxvirus A32 96.9 0.0011 2.3E-08 67.4 4.8 33 218-250 15-47 (241)
233 KOG0731 AAA+-type ATPase conta 96.9 0.031 6.8E-07 65.5 17.1 178 191-392 309-520 (774)
234 PRK00771 signal recognition pa 96.9 0.013 2.8E-07 65.8 13.5 29 215-243 94-122 (437)
235 CHL00095 clpC Clp protease ATP 96.9 0.0056 1.2E-07 75.7 11.7 118 193-320 509-636 (821)
236 cd01131 PilT Pilus retraction 96.9 0.0032 6.9E-08 63.4 7.8 111 217-338 2-112 (198)
237 TIGR03346 chaperone_ClpB ATP-d 96.9 0.004 8.8E-08 77.2 10.3 51 193-243 565-622 (852)
238 PF10443 RNA12: RNA12 protein; 96.8 0.24 5.3E-06 54.3 22.3 101 298-402 149-284 (431)
239 KOG2739 Leucine-rich acidic nu 96.8 0.00072 1.6E-08 67.8 2.9 84 839-923 41-129 (260)
240 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.6E-08 70.9 4.2 49 194-242 52-104 (361)
241 KOG2228 Origin recognition com 96.8 0.016 3.5E-07 60.2 12.0 172 191-364 22-218 (408)
242 PF02562 PhoH: PhoH-like prote 96.8 0.0035 7.6E-08 62.2 7.1 127 199-335 6-156 (205)
243 PRK08118 topology modulation p 96.8 0.0034 7.3E-08 61.1 6.9 32 218-249 3-37 (167)
244 PRK11034 clpA ATP-dependent Cl 96.7 0.0087 1.9E-07 72.1 11.7 49 193-241 458-513 (758)
245 PF13177 DNA_pol3_delta2: DNA 96.7 0.02 4.3E-07 55.4 12.0 138 197-353 1-162 (162)
246 KOG0744 AAA+-type ATPase [Post 96.7 0.0096 2.1E-07 61.3 9.8 35 216-250 177-215 (423)
247 PF07693 KAP_NTPase: KAP famil 96.7 0.074 1.6E-06 58.6 17.7 75 199-273 2-79 (325)
248 PRK14974 cell division protein 96.7 0.017 3.8E-07 62.4 12.1 29 215-243 139-167 (336)
249 KOG2035 Replication factor C, 96.6 0.066 1.4E-06 54.2 14.8 207 193-416 13-259 (351)
250 COG1618 Predicted nucleotide k 96.6 0.0021 4.5E-08 59.3 4.1 34 217-250 6-40 (179)
251 COG2607 Predicted ATPase (AAA+ 96.6 0.027 5.9E-07 55.7 11.8 115 193-335 60-183 (287)
252 PRK05541 adenylylsulfate kinas 96.6 0.0055 1.2E-07 60.5 7.4 37 215-251 6-42 (176)
253 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4E-08 59.4 3.7 23 218-240 1-23 (121)
254 PRK07261 topology modulation p 96.6 0.0082 1.8E-07 58.7 8.3 23 218-240 2-24 (171)
255 PRK06964 DNA polymerase III su 96.6 0.34 7.3E-06 52.8 21.1 91 296-396 131-225 (342)
256 cd01120 RecA-like_NTPases RecA 96.6 0.0047 1E-07 60.2 6.5 34 218-251 1-34 (165)
257 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.023 5E-07 54.0 10.7 117 217-336 3-139 (159)
258 PRK04132 replication factor C 96.5 0.051 1.1E-06 65.7 15.9 150 223-392 571-727 (846)
259 TIGR00959 ffh signal recogniti 96.5 0.025 5.5E-07 63.3 12.5 26 216-241 99-124 (428)
260 PRK10733 hflB ATP-dependent me 96.5 0.016 3.4E-07 69.4 11.4 128 217-366 186-336 (644)
261 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 65.3 2.5 61 886-946 64-129 (260)
262 PRK10867 signal recognition pa 96.5 0.02 4.2E-07 64.2 11.3 29 215-243 99-127 (433)
263 PRK11889 flhF flagellar biosyn 96.5 0.096 2.1E-06 57.0 15.8 29 215-243 240-268 (436)
264 PRK06696 uridine kinase; Valid 96.4 0.0058 1.3E-07 62.9 6.6 46 198-243 3-49 (223)
265 PRK09361 radB DNA repair and r 96.4 0.0094 2E-07 61.6 7.9 47 205-251 12-58 (225)
266 PRK07667 uridine kinase; Provi 96.4 0.0068 1.5E-07 60.8 6.5 42 202-243 3-44 (193)
267 TIGR00064 ftsY signal recognit 96.4 0.023 5E-07 60.0 10.7 30 214-243 70-99 (272)
268 COG0470 HolB ATPase involved i 96.4 0.026 5.7E-07 62.2 11.8 140 194-352 2-168 (325)
269 COG0542 clpA ATP-binding subun 96.3 0.1 2.2E-06 61.8 16.6 151 192-364 169-345 (786)
270 cd01394 radB RadB. The archaea 96.3 0.024 5.1E-07 58.3 10.2 48 204-251 7-54 (218)
271 TIGR02237 recomb_radB DNA repa 96.3 0.015 3.3E-07 59.3 8.7 45 208-252 4-48 (209)
272 PF07728 AAA_5: AAA domain (dy 96.3 0.0015 3.3E-08 61.7 1.2 22 219-240 2-23 (139)
273 COG0464 SpoVK ATPases of the A 96.3 0.021 4.6E-07 66.8 10.9 151 193-366 242-424 (494)
274 PRK06762 hypothetical protein; 96.3 0.012 2.6E-07 57.5 7.4 24 217-240 3-26 (166)
275 KOG1947 Leucine rich repeat pr 96.3 0.00075 1.6E-08 79.3 -1.4 14 932-945 426-439 (482)
276 PRK04296 thymidine kinase; Pro 96.2 0.0072 1.6E-07 60.3 5.7 110 217-336 3-117 (190)
277 KOG0734 AAA+-type ATPase conta 96.2 0.04 8.7E-07 60.7 11.4 47 193-239 304-360 (752)
278 PRK11608 pspF phage shock prot 96.2 0.08 1.7E-06 57.8 14.2 47 193-239 6-52 (326)
279 KOG0739 AAA+-type ATPase [Post 96.2 0.12 2.5E-06 52.9 13.7 172 193-390 133-335 (439)
280 KOG1947 Leucine rich repeat pr 96.2 0.00099 2.2E-08 78.2 -0.8 129 744-872 186-329 (482)
281 PF13671 AAA_33: AAA domain; P 96.2 0.0064 1.4E-07 57.7 4.7 24 218-241 1-24 (143)
282 PF13604 AAA_30: AAA domain; P 96.1 0.021 4.6E-07 57.3 8.5 40 201-243 6-45 (196)
283 PF14532 Sigma54_activ_2: Sigm 96.1 0.0031 6.7E-08 59.4 2.3 46 196-241 1-46 (138)
284 TIGR01425 SRP54_euk signal rec 96.1 0.057 1.2E-06 60.1 12.4 29 215-243 99-127 (429)
285 cd01129 PulE-GspE PulE/GspE Th 96.1 0.028 6.1E-07 59.2 9.5 102 201-317 68-169 (264)
286 PRK12724 flagellar biosynthesi 96.1 0.16 3.5E-06 56.1 15.4 25 216-240 223-247 (432)
287 KOG0733 Nuclear AAA ATPase (VC 96.1 0.022 4.9E-07 63.7 8.9 150 216-390 545-718 (802)
288 PRK15455 PrkA family serine pr 96.1 0.0071 1.5E-07 68.5 5.1 51 193-243 76-130 (644)
289 TIGR01420 pilT_fam pilus retra 96.0 0.015 3.1E-07 64.1 7.4 111 216-337 122-232 (343)
290 KOG0652 26S proteasome regulat 96.0 0.21 4.5E-06 49.9 14.2 163 193-381 171-372 (424)
291 TIGR02902 spore_lonB ATP-depen 96.0 0.061 1.3E-06 62.9 12.4 47 192-240 64-110 (531)
292 TIGR01817 nifA Nif-specific re 96.0 0.072 1.6E-06 62.9 13.3 50 191-240 194-243 (534)
293 PRK06067 flagellar accessory p 96.0 0.022 4.7E-07 59.3 8.0 48 204-251 13-60 (234)
294 KOG2123 Uncharacterized conser 95.9 0.00053 1.1E-08 68.6 -3.9 78 841-920 19-98 (388)
295 TIGR02974 phageshock_pspF psp 95.9 0.11 2.3E-06 56.8 13.4 46 195-240 1-46 (329)
296 PF00448 SRP54: SRP54-type pro 95.9 0.042 9.1E-07 54.9 9.3 34 217-250 2-35 (196)
297 KOG0743 AAA+-type ATPase [Post 95.9 0.15 3.3E-06 55.8 13.9 153 216-403 235-417 (457)
298 cd01393 recA_like RecA is a b 95.9 0.042 9.2E-07 56.8 9.7 47 205-251 8-60 (226)
299 COG0488 Uup ATPase components 95.9 0.21 4.5E-06 57.8 16.0 57 289-351 449-511 (530)
300 KOG0727 26S proteasome regulat 95.9 0.02 4.3E-07 56.6 6.5 51 194-244 156-217 (408)
301 COG2812 DnaX DNA polymerase II 95.8 0.049 1.1E-06 61.8 10.5 182 191-389 14-213 (515)
302 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.04 8.8E-07 54.8 8.8 23 218-240 1-23 (183)
303 COG4088 Predicted nucleotide k 95.8 0.065 1.4E-06 51.8 9.3 27 217-243 2-28 (261)
304 TIGR03574 selen_PSTK L-seryl-t 95.8 0.027 5.8E-07 59.2 7.7 26 218-243 1-26 (249)
305 cd00983 recA RecA is a bacter 95.7 0.024 5.1E-07 60.8 7.1 47 205-251 43-90 (325)
306 PF01583 APS_kinase: Adenylyls 95.7 0.018 3.8E-07 54.5 5.3 35 216-250 2-36 (156)
307 KOG1051 Chaperone HSP104 and r 95.7 0.068 1.5E-06 64.3 11.2 106 193-311 562-674 (898)
308 TIGR02012 tigrfam_recA protein 95.7 0.021 4.6E-07 61.1 6.4 47 205-251 43-90 (321)
309 PRK14722 flhF flagellar biosyn 95.7 0.099 2.2E-06 57.3 11.7 30 215-244 136-165 (374)
310 PRK10416 signal recognition pa 95.7 0.054 1.2E-06 58.5 9.6 29 215-243 113-141 (318)
311 cd01121 Sms Sms (bacterial rad 95.7 0.044 9.5E-07 60.5 9.1 48 204-251 70-117 (372)
312 PF00485 PRK: Phosphoribulokin 95.6 0.01 2.3E-07 59.6 3.9 26 218-243 1-26 (194)
313 cd02027 APSK Adenosine 5'-phos 95.6 0.059 1.3E-06 51.3 8.8 24 218-241 1-24 (149)
314 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.029 6.3E-07 58.5 7.3 46 206-251 9-60 (235)
315 KOG2123 Uncharacterized conser 95.6 0.00054 1.2E-08 68.6 -5.4 95 590-685 22-123 (388)
316 PF13238 AAA_18: AAA domain; P 95.6 0.011 2.3E-07 55.0 3.5 22 219-240 1-22 (129)
317 PRK08699 DNA polymerase III su 95.6 0.13 2.8E-06 55.8 12.2 86 297-392 113-202 (325)
318 PRK15429 formate hydrogenlyase 95.6 0.057 1.2E-06 65.8 10.5 49 192-240 375-423 (686)
319 KOG0729 26S proteasome regulat 95.6 0.094 2E-06 52.5 9.8 54 194-252 178-242 (435)
320 PRK13531 regulatory ATPase Rav 95.5 0.025 5.3E-07 63.4 6.6 45 193-241 20-64 (498)
321 PRK09354 recA recombinase A; P 95.5 0.027 5.9E-07 60.8 6.7 48 204-251 47-95 (349)
322 PF03308 ArgK: ArgK protein; 95.5 0.039 8.4E-07 56.1 7.3 57 201-258 14-70 (266)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.044 9.5E-07 51.9 7.4 25 216-240 26-50 (144)
324 PRK12726 flagellar biosynthesi 95.5 0.3 6.6E-06 53.1 14.3 36 215-250 205-240 (407)
325 PF07726 AAA_3: ATPase family 95.4 0.0092 2E-07 53.6 2.3 28 219-246 2-29 (131)
326 PTZ00301 uridine kinase; Provi 95.4 0.019 4.1E-07 57.9 4.8 29 216-244 3-31 (210)
327 cd03115 SRP The signal recogni 95.4 0.031 6.8E-07 55.0 6.3 26 218-243 2-27 (173)
328 PRK05703 flhF flagellar biosyn 95.4 0.24 5.2E-06 55.9 14.0 26 216-241 221-246 (424)
329 cd00544 CobU Adenosylcobinamid 95.4 0.089 1.9E-06 51.1 9.2 79 219-306 2-82 (169)
330 cd03247 ABCC_cytochrome_bd The 95.4 0.064 1.4E-06 53.0 8.5 25 216-240 28-52 (178)
331 cd02019 NK Nucleoside/nucleoti 95.4 0.013 2.9E-07 47.2 2.9 23 218-240 1-23 (69)
332 PRK12727 flagellar biosynthesi 95.4 0.15 3.3E-06 57.8 12.0 29 215-243 349-377 (559)
333 cd03214 ABC_Iron-Siderophores_ 95.3 0.024 5.2E-07 56.2 5.1 34 216-250 25-58 (180)
334 PTZ00088 adenylate kinase 1; P 95.3 0.036 7.7E-07 56.8 6.4 22 219-240 9-30 (229)
335 PF08423 Rad51: Rad51; InterP 95.3 0.034 7.4E-07 58.2 6.4 37 204-240 26-62 (256)
336 PF00437 T2SE: Type II/IV secr 95.3 0.017 3.6E-07 61.7 4.2 126 194-335 105-232 (270)
337 cd01125 repA Hexameric Replica 95.3 0.12 2.5E-06 54.0 10.3 24 218-241 3-26 (239)
338 PF08433 KTI12: Chromatin asso 95.2 0.044 9.6E-07 57.6 7.0 27 217-243 2-28 (270)
339 COG0572 Udk Uridine kinase [Nu 95.2 0.023 4.9E-07 56.5 4.4 30 214-243 6-35 (218)
340 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.18 4E-06 64.8 13.1 26 215-240 1629-1654(2281)
341 PRK12678 transcription termina 95.2 0.043 9.4E-07 62.0 6.9 93 216-311 416-517 (672)
342 KOG0651 26S proteasome regulat 95.1 0.041 8.8E-07 56.6 6.1 30 215-244 165-194 (388)
343 TIGR00150 HI0065_YjeE ATPase, 95.1 0.03 6.6E-07 51.4 4.7 25 216-240 22-46 (133)
344 COG1224 TIP49 DNA helicase TIP 95.1 0.044 9.6E-07 57.5 6.4 57 190-246 36-95 (450)
345 PRK04328 hypothetical protein; 95.1 0.081 1.8E-06 55.4 8.7 47 205-251 12-58 (249)
346 KOG0735 AAA+-type ATPase [Post 95.1 0.32 6.9E-06 55.9 13.5 151 193-365 667-848 (952)
347 COG0468 RecA RecA/RadA recombi 95.1 0.072 1.6E-06 55.7 8.1 49 205-253 49-97 (279)
348 PF00910 RNA_helicase: RNA hel 95.1 0.014 3E-07 52.0 2.5 26 219-244 1-26 (107)
349 PRK08233 hypothetical protein; 95.1 0.018 3.9E-07 57.3 3.5 26 216-241 3-28 (182)
350 COG1875 NYN ribonuclease and A 95.1 0.14 3E-06 54.2 9.9 50 197-248 228-280 (436)
351 cd03222 ABC_RNaseL_inhibitor T 95.1 0.072 1.6E-06 52.2 7.6 25 216-240 25-49 (177)
352 TIGR00708 cobA cob(I)alamin ad 95.1 0.097 2.1E-06 50.4 8.2 133 217-351 6-156 (173)
353 PRK05480 uridine/cytidine kina 95.1 0.021 4.5E-07 58.3 4.0 26 215-240 5-30 (209)
354 PRK08533 flagellar accessory p 95.1 0.052 1.1E-06 56.0 6.9 38 214-251 22-59 (230)
355 PRK04040 adenylate kinase; Pro 95.1 0.022 4.8E-07 56.5 4.0 25 217-241 3-27 (188)
356 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.047 1E-06 60.0 6.9 95 216-316 134-231 (358)
357 PRK09270 nucleoside triphospha 95.1 0.034 7.3E-07 57.5 5.5 32 213-244 30-61 (229)
358 PF00406 ADK: Adenylate kinase 95.0 0.027 5.8E-07 54.0 4.5 20 221-240 1-20 (151)
359 PF06068 TIP49: TIP49 C-termin 95.0 0.049 1.1E-06 58.2 6.5 58 192-249 23-83 (398)
360 cd03223 ABCD_peroxisomal_ALDP 95.0 0.14 3E-06 49.9 9.4 25 216-240 27-51 (166)
361 PRK03839 putative kinase; Prov 95.0 0.019 4.1E-07 57.0 3.3 24 218-241 2-25 (180)
362 PRK09280 F0F1 ATP synthase sub 95.0 0.075 1.6E-06 59.6 8.3 92 216-310 144-251 (463)
363 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.12 2.5E-06 53.0 9.0 51 288-340 148-204 (254)
364 COG2884 FtsE Predicted ATPase 95.0 0.11 2.5E-06 49.7 8.1 54 287-342 145-204 (223)
365 PTZ00494 tuzin-like protein; P 95.0 2.3 5.1E-05 46.7 18.7 181 173-365 346-544 (664)
366 cd03228 ABCC_MRP_Like The MRP 95.0 0.14 3.1E-06 50.2 9.4 34 216-250 28-61 (171)
367 PRK11823 DNA repair protein Ra 95.0 0.11 2.3E-06 59.4 9.7 49 203-251 67-115 (446)
368 PRK12337 2-phosphoglycerate ki 95.0 0.037 8.1E-07 61.5 5.8 26 215-240 254-279 (475)
369 COG0465 HflB ATP-dependent Zn 95.0 0.12 2.6E-06 59.6 9.9 174 191-390 148-355 (596)
370 PRK00625 shikimate kinase; Pro 95.0 0.02 4.2E-07 55.9 3.2 24 218-241 2-25 (173)
371 TIGR00416 sms DNA repair prote 95.0 0.11 2.4E-06 59.2 9.7 49 203-251 81-129 (454)
372 TIGR00235 udk uridine kinase. 94.9 0.027 5.8E-07 57.3 4.3 28 214-241 4-31 (207)
373 PRK12723 flagellar biosynthesi 94.9 0.21 4.5E-06 55.4 11.4 27 215-241 173-199 (388)
374 COG5635 Predicted NTPase (NACH 94.9 0.24 5.2E-06 61.5 13.3 196 217-417 223-449 (824)
375 cd03238 ABC_UvrA The excision 94.9 0.11 2.4E-06 50.9 8.3 23 216-238 21-43 (176)
376 COG4608 AppF ABC-type oligopep 94.9 0.057 1.2E-06 55.2 6.4 123 215-341 38-176 (268)
377 PRK12597 F0F1 ATP synthase sub 94.9 0.084 1.8E-06 59.4 8.4 92 216-310 143-250 (461)
378 TIGR03499 FlhF flagellar biosy 94.9 0.12 2.5E-06 55.3 9.2 29 215-243 193-221 (282)
379 TIGR02858 spore_III_AA stage I 94.9 0.12 2.6E-06 54.3 9.1 118 215-339 110-233 (270)
380 cd03216 ABC_Carb_Monos_I This 94.8 0.06 1.3E-06 52.3 6.3 116 216-339 26-146 (163)
381 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.6E-07 35.1 0.8 18 912-929 2-19 (22)
382 cd01130 VirB11-like_ATPase Typ 94.8 0.036 7.8E-07 55.2 4.7 93 216-317 25-120 (186)
383 PRK06217 hypothetical protein; 94.8 0.12 2.6E-06 51.3 8.5 24 218-241 3-26 (183)
384 KOG1969 DNA replication checkp 94.8 0.083 1.8E-06 60.8 7.9 26 214-239 324-349 (877)
385 PRK05022 anaerobic nitric oxid 94.8 0.077 1.7E-06 62.0 8.1 50 191-240 185-234 (509)
386 COG3854 SpoIIIAA ncharacterize 94.8 0.15 3.4E-06 50.2 8.6 113 217-337 138-255 (308)
387 PRK08356 hypothetical protein; 94.8 0.15 3.2E-06 51.2 9.2 21 217-237 6-26 (195)
388 PRK10463 hydrogenase nickel in 94.8 0.037 7.9E-07 58.1 4.7 35 214-248 102-136 (290)
389 TIGR02655 circ_KaiC circadian 94.7 0.062 1.3E-06 62.3 7.1 50 202-251 249-298 (484)
390 PRK04301 radA DNA repair and r 94.7 0.086 1.9E-06 57.5 7.8 37 204-240 90-126 (317)
391 TIGR01069 mutS2 MutS2 family p 94.7 0.045 9.7E-07 66.6 6.1 111 296-416 401-521 (771)
392 TIGR01039 atpD ATP synthase, F 94.7 0.1 2.3E-06 58.2 8.3 94 215-311 142-251 (461)
393 KOG0736 Peroxisome assembly fa 94.7 0.13 2.9E-06 59.5 9.1 95 193-309 672-776 (953)
394 KOG0726 26S proteasome regulat 94.7 0.13 2.9E-06 52.2 8.2 52 193-244 185-247 (440)
395 TIGR02782 TrbB_P P-type conjug 94.7 0.09 1.9E-06 56.4 7.6 89 217-316 133-223 (299)
396 cd03240 ABC_Rad50 The catalyti 94.6 0.15 3.2E-06 51.6 8.8 20 218-237 24-43 (204)
397 cd03246 ABCC_Protease_Secretio 94.6 0.13 2.8E-06 50.5 8.2 25 216-240 28-52 (173)
398 cd01122 GP4d_helicase GP4d_hel 94.6 0.21 4.6E-06 53.3 10.5 37 215-251 29-66 (271)
399 PRK06547 hypothetical protein; 94.6 0.032 6.9E-07 54.4 3.8 27 214-240 13-39 (172)
400 PF07724 AAA_2: AAA domain (Cd 94.6 0.031 6.6E-07 54.5 3.6 40 216-256 3-43 (171)
401 TIGR00390 hslU ATP-dependent p 94.6 0.044 9.6E-07 60.1 5.1 52 193-244 12-75 (441)
402 PRK05986 cob(I)alamin adenolsy 94.6 0.095 2.1E-06 51.2 6.8 118 216-336 22-159 (191)
403 TIGR01351 adk adenylate kinase 94.6 0.12 2.7E-06 52.5 8.1 22 219-240 2-23 (210)
404 TIGR01360 aden_kin_iso1 adenyl 94.5 0.03 6.4E-07 56.0 3.5 26 215-240 2-27 (188)
405 PRK00889 adenylylsulfate kinas 94.5 0.049 1.1E-06 53.7 5.0 27 216-242 4-30 (175)
406 COG2019 AdkA Archaeal adenylat 94.5 0.021 4.6E-07 53.1 2.1 25 216-240 4-28 (189)
407 cd03230 ABC_DR_subfamily_A Thi 94.5 0.13 2.8E-06 50.6 7.9 25 216-240 26-50 (173)
408 TIGR02788 VirB11 P-type DNA tr 94.5 0.061 1.3E-06 58.3 6.0 110 216-337 144-255 (308)
409 PF00006 ATP-synt_ab: ATP synt 94.5 0.097 2.1E-06 52.9 7.0 87 217-309 16-117 (215)
410 TIGR02238 recomb_DMC1 meiotic 94.5 0.092 2E-06 56.6 7.2 36 204-239 84-119 (313)
411 PRK00131 aroK shikimate kinase 94.5 0.031 6.7E-07 55.1 3.4 25 216-240 4-28 (175)
412 PF03205 MobB: Molybdopterin g 94.5 0.061 1.3E-06 50.4 5.1 34 217-250 1-35 (140)
413 TIGR03600 phage_DnaB phage rep 94.5 0.69 1.5E-05 52.8 14.8 71 196-274 175-246 (421)
414 PRK05439 pantothenate kinase; 94.5 0.088 1.9E-06 56.2 6.9 30 213-242 83-112 (311)
415 TIGR03575 selen_PSTK_euk L-ser 94.5 0.1 2.3E-06 56.4 7.5 23 219-241 2-24 (340)
416 PF10236 DAP3: Mitochondrial r 94.5 1 2.2E-05 48.7 15.2 48 346-393 258-306 (309)
417 PRK05201 hslU ATP-dependent pr 94.4 0.071 1.5E-06 58.6 6.2 51 193-243 15-77 (443)
418 PRK10820 DNA-binding transcrip 94.4 0.55 1.2E-05 55.0 13.9 49 191-239 202-250 (520)
419 cd02028 UMPK_like Uridine mono 94.4 0.047 1E-06 53.9 4.4 26 218-243 1-26 (179)
420 PRK06995 flhF flagellar biosyn 94.4 0.51 1.1E-05 53.7 13.0 26 216-241 256-281 (484)
421 PRK07132 DNA polymerase III su 94.4 8.1 0.00018 41.4 21.4 158 203-388 6-177 (299)
422 PRK13947 shikimate kinase; Pro 94.4 0.032 6.9E-07 54.8 3.2 25 218-242 3-27 (171)
423 PRK00279 adk adenylate kinase; 94.3 0.11 2.3E-06 53.3 7.0 23 218-240 2-24 (215)
424 COG1066 Sms Predicted ATP-depe 94.3 0.18 4E-06 54.4 8.7 96 203-307 80-178 (456)
425 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.11 2.3E-06 57.2 7.3 103 214-335 60-167 (362)
426 cd01858 NGP_1 NGP-1. Autoanti 94.2 0.47 1E-05 45.7 11.0 24 216-239 102-125 (157)
427 PRK14528 adenylate kinase; Pro 94.2 0.12 2.6E-06 51.4 7.0 24 217-240 2-25 (186)
428 COG1102 Cmk Cytidylate kinase 94.2 0.038 8.2E-07 51.3 2.9 24 218-241 2-25 (179)
429 cd00227 CPT Chloramphenicol (C 94.2 0.04 8.6E-07 54.3 3.4 25 217-241 3-27 (175)
430 PRK10923 glnG nitrogen regulat 94.2 0.59 1.3E-05 54.5 13.7 48 193-240 138-185 (469)
431 PF13306 LRR_5: Leucine rich r 94.2 0.12 2.7E-06 47.7 6.6 10 815-824 56-65 (129)
432 COG1703 ArgK Putative periplas 94.2 0.087 1.9E-06 54.3 5.8 42 203-244 38-79 (323)
433 TIGR02525 plasmid_TraJ plasmid 94.2 0.084 1.8E-06 58.1 6.1 94 217-317 150-245 (372)
434 cd01135 V_A-ATPase_B V/A-type 94.1 0.17 3.7E-06 52.6 8.0 92 216-311 69-180 (276)
435 cd02024 NRK1 Nicotinamide ribo 94.1 0.034 7.3E-07 54.8 2.7 23 218-240 1-23 (187)
436 PRK03846 adenylylsulfate kinas 94.1 0.07 1.5E-06 53.8 5.1 37 214-250 22-58 (198)
437 COG3640 CooC CO dehydrogenase 94.1 0.075 1.6E-06 52.7 4.9 36 218-253 2-37 (255)
438 PF00560 LRR_1: Leucine Rich R 94.1 0.018 3.8E-07 34.3 0.4 21 888-908 1-21 (22)
439 PRK01184 hypothetical protein; 94.1 0.099 2.2E-06 52.0 6.1 21 217-238 2-22 (184)
440 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.17 3.7E-06 52.6 7.8 96 216-316 69-181 (274)
441 COG1428 Deoxynucleoside kinase 94.1 0.042 9.2E-07 53.8 3.2 26 216-241 4-29 (216)
442 TIGR00455 apsK adenylylsulfate 94.1 0.24 5.2E-06 49.2 8.8 27 215-241 17-43 (184)
443 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.13 2.7E-06 57.7 7.3 91 216-310 138-245 (449)
444 PF03266 NTPase_1: NTPase; In 94.0 0.061 1.3E-06 52.2 4.3 24 219-242 2-25 (168)
445 KOG1532 GTPase XAB1, interacts 94.0 0.059 1.3E-06 54.3 4.1 40 214-254 17-56 (366)
446 PF00158 Sigma54_activat: Sigm 94.0 0.049 1.1E-06 52.9 3.6 45 195-239 1-45 (168)
447 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.14 3E-06 51.7 7.0 24 216-239 26-49 (200)
448 PF13306 LRR_5: Leucine rich r 94.0 0.24 5.2E-06 45.8 8.2 14 837-850 31-44 (129)
449 KOG4308 LRR-containing protein 94.0 0.00076 1.7E-08 76.7 -10.4 178 746-923 87-303 (478)
450 PRK13949 shikimate kinase; Pro 94.0 0.043 9.4E-07 53.5 3.1 24 218-241 3-26 (169)
451 PRK10751 molybdopterin-guanine 93.9 0.091 2E-06 50.8 5.2 28 215-242 5-32 (173)
452 cd02025 PanK Pantothenate kina 93.9 0.038 8.3E-07 56.4 2.8 25 218-242 1-25 (220)
453 PRK09435 membrane ATPase/prote 93.9 0.14 3E-06 55.5 7.1 41 203-243 43-83 (332)
454 PF13245 AAA_19: Part of AAA d 93.9 0.17 3.7E-06 41.5 6.0 23 217-239 11-33 (76)
455 PRK08972 fliI flagellum-specif 93.9 0.14 3.1E-06 56.9 7.2 90 216-311 162-266 (444)
456 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.18 3.9E-06 54.0 7.7 52 192-243 60-115 (358)
457 cd02023 UMPK Uridine monophosp 93.8 0.04 8.6E-07 55.6 2.7 23 218-240 1-23 (198)
458 cd02020 CMPK Cytidine monophos 93.8 0.045 9.7E-07 52.1 2.9 23 218-240 1-23 (147)
459 cd03232 ABC_PDR_domain2 The pl 93.8 0.27 5.9E-06 49.2 8.6 23 216-238 33-55 (192)
460 cd00071 GMPK Guanosine monopho 93.8 0.043 9.2E-07 51.4 2.6 26 218-243 1-26 (137)
461 cd01428 ADK Adenylate kinase ( 93.8 0.28 6.2E-06 49.2 8.9 22 219-240 2-23 (194)
462 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.092 2E-06 55.3 5.4 38 214-251 34-71 (259)
463 PRK14526 adenylate kinase; Pro 93.8 0.12 2.7E-06 52.2 6.0 22 219-240 3-24 (211)
464 CHL00060 atpB ATP synthase CF1 93.7 0.19 4.2E-06 56.6 8.0 93 215-310 160-275 (494)
465 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.13 2.9E-06 49.6 6.1 123 217-349 26-153 (157)
466 PF00154 RecA: recA bacterial 93.7 0.13 2.9E-06 54.9 6.4 107 204-316 40-150 (322)
467 cd03283 ABC_MutS-like MutS-lik 93.7 0.33 7.2E-06 48.7 9.1 24 217-240 26-49 (199)
468 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.084 1.8E-06 53.7 4.8 23 216-238 29-51 (213)
469 TIGR02322 phosphon_PhnN phosph 93.7 0.054 1.2E-06 53.6 3.3 25 217-241 2-26 (179)
470 cd00464 SK Shikimate kinase (S 93.6 0.055 1.2E-06 52.0 3.2 22 219-240 2-23 (154)
471 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.23 5E-06 51.6 8.0 48 204-251 9-56 (237)
472 PF13504 LRR_7: Leucine rich r 93.6 0.046 1E-06 30.1 1.4 14 912-925 3-16 (17)
473 COG0467 RAD55 RecA-superfamily 93.6 0.12 2.6E-06 54.7 5.9 44 208-251 15-58 (260)
474 COG0563 Adk Adenylate kinase a 93.6 0.056 1.2E-06 52.9 3.1 23 218-240 2-24 (178)
475 PRK14529 adenylate kinase; Pro 93.6 0.24 5.2E-06 50.3 7.7 23 219-241 3-25 (223)
476 PRK13948 shikimate kinase; Pro 93.6 0.061 1.3E-06 52.9 3.3 27 215-241 9-35 (182)
477 KOG1970 Checkpoint RAD17-RFC c 93.6 0.13 2.8E-06 57.4 6.0 42 199-240 88-134 (634)
478 TIGR02768 TraA_Ti Ti-type conj 93.5 0.45 9.7E-06 58.1 11.4 27 217-243 369-395 (744)
479 cd02021 GntK Gluconate kinase 93.5 0.052 1.1E-06 51.9 2.8 23 218-240 1-23 (150)
480 PRK13946 shikimate kinase; Pro 93.5 0.058 1.3E-06 53.6 3.1 24 217-240 11-34 (184)
481 PF05970 PIF1: PIF1-like helic 93.4 0.13 2.9E-06 57.1 6.3 34 215-248 21-54 (364)
482 PF00625 Guanylate_kin: Guanyl 93.4 0.079 1.7E-06 52.6 4.0 34 216-249 2-35 (183)
483 COG1419 FlhF Flagellar GTP-bin 93.4 0.43 9.4E-06 52.0 9.6 36 216-251 203-240 (407)
484 PF13086 AAA_11: AAA domain; P 93.4 0.24 5.3E-06 51.4 7.9 37 200-240 5-41 (236)
485 TIGR00554 panK_bact pantothena 93.4 0.18 3.8E-06 53.5 6.6 28 214-241 60-87 (290)
486 PRK05342 clpX ATP-dependent pr 93.3 0.11 2.3E-06 58.3 5.2 49 194-242 72-134 (412)
487 TIGR01650 PD_CobS cobaltochela 93.3 0.17 3.6E-06 54.1 6.4 52 189-244 41-92 (327)
488 cd03213 ABCG_EPDR ABCG transpo 93.3 0.33 7.2E-06 48.7 8.3 26 215-240 34-59 (194)
489 TIGR02533 type_II_gspE general 93.3 0.33 7.2E-06 55.9 9.3 106 196-316 224-330 (486)
490 PRK13975 thymidylate kinase; P 93.3 0.073 1.6E-06 53.6 3.6 26 217-242 3-28 (196)
491 PF06309 Torsin: Torsin; Inte 93.3 0.19 4.1E-06 45.2 5.6 47 194-240 26-77 (127)
492 TIGR00176 mobB molybdopterin-g 93.3 0.093 2E-06 50.2 4.1 26 218-243 1-26 (155)
493 PLN02674 adenylate kinase 93.3 0.54 1.2E-05 48.4 9.8 24 217-240 32-55 (244)
494 COG1124 DppF ABC-type dipeptid 93.3 0.081 1.8E-06 53.0 3.6 23 216-238 33-55 (252)
495 PF10137 TIR-like: Predicted n 93.2 0.22 4.9E-06 45.1 6.1 60 20-82 1-61 (125)
496 PLN02318 phosphoribulokinase/u 93.2 0.1 2.2E-06 59.8 4.7 29 212-240 61-89 (656)
497 PRK14493 putative bifunctional 93.2 0.11 2.3E-06 54.8 4.6 34 217-251 2-35 (274)
498 COG0396 sufC Cysteine desulfur 93.2 0.53 1.2E-05 46.8 8.9 61 287-347 152-216 (251)
499 PRK14530 adenylate kinase; Pro 93.1 0.072 1.6E-06 54.5 3.3 23 218-240 5-27 (215)
500 COG0541 Ffh Signal recognition 93.1 0.41 9E-06 52.3 9.0 40 203-242 80-126 (451)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.3e-128 Score=1213.28 Aligned_cols=892 Identities=38% Similarity=0.634 Sum_probs=761.7
Q ss_pred CCCCCCCCCCCCCCCCccccEEEcCccccccCchhHHHHHHHHhCCCceEecCCCCCCCcchHHHHHHhhccceeEEEec
Q 037332 1 MAASSSSSSSSRLNSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDEELKRGDEISPAILNAIIGSKILVIIFS 80 (1007)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~s 80 (1007)
||||||+ ++.++||||+||||+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||
T Consensus 1 ~~~~~~~------~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s 74 (1153)
T PLN03210 1 MASSSSS------SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFS 74 (1153)
T ss_pred CCCCCCC------CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEec
Confidence 6666444 2468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHhcCCCeEEEEEEeeCCCccccccCchHHHHHHHHHHhccChHHHHHHHHHHHhhccCCCC
Q 037332 81 KNYASSKWCLDELVKILECKNMNDQVVVPVFYHVDPSDVRKQTGSFGDAFSKLEQQFTEMPEKVQLWRAVLTEASNLSGW 160 (1007)
Q Consensus 81 ~~~~~s~~c~~el~~~~~~~~~~~~~v~pvf~~v~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 160 (1007)
++||+|+||++||++|++|++..++.|+||||+|||+|||+|+|.|+++|.+++++ ...+++++||+||++||++.||
T Consensus 75 ~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~ 152 (1153)
T PLN03210 75 KNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY 152 (1153)
T ss_pred CCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce
Confidence 99999999999999999999999999999999999999999999999999999875 3568899999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 161 DSTNIRSEAQLVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 161 ~~~~~~~~~~~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++..+.+|+++|++||++|.+++. .+++.+.+++|||+.+++++.++|..+.+++++|+||||||+||||||+++|+++
T Consensus 153 ~~~~~~~E~~~i~~Iv~~v~~~l~-~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 153 HSQNWPNEAKMIEEIANDVLGKLN-LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhhc-cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 999999999999999999999998 7778888999999999999999998777889999999999999999999999999
Q ss_pred hcccCceEEEEec--chhh--------hccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch
Q 037332 241 FREFEGKCFVANV--REES--------EKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 241 ~~~f~~~~~~~~~--~~~~--------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 310 (1007)
..+|+..+|+... .... ........++++++.++....... ......++++++++|+||||||||+.+
T Consensus 232 ~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~krvLLVLDdv~~~~ 309 (1153)
T PLN03210 232 SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKHRKVLIFIDDLDDQD 309 (1153)
T ss_pred hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhCCeEEEEEeCCCCHH
Confidence 9999999988542 1110 011112345566666655433221 112367888999999999999999999
Q ss_pred hhHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 311 QLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 311 ~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
+|+.+.....++++||+||||||+++++..++++++|+|+.|++++|++||+++||++..+++.+.+++++|+++|+|+|
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 99999988888899999999999999998888889999999999999999999999988777889999999999999999
Q ss_pred hHHHHHhhhhcCCCHHHHHHHHHHhhhCCCCchHHHHHhhhhccch-hhHHHhhhhhcccCCCCHHHHHHhhcCCCc-hh
Q 037332 391 LALRVLGSFLHQKNKLDWEIALENLKLICDPDIYDVLKVSYNELKA-EEKSMFLDIACFFKGEDKDYVTMSQDDPNF-AY 468 (1007)
Q Consensus 391 Lal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~~~~~~~~-~~ 468 (1007)
||++++|++|++++..+|+.++.+++...+..|.+++++||++|++ .+|.||+++|||+.+..++.+..++...++ +.
T Consensus 390 LAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~ 469 (1153)
T PLN03210 390 LGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVN 469 (1153)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCch
Confidence 9999999999999999999999999988888999999999999986 589999999999999999998888887777 77
Q ss_pred HhHHHHhhccCeEEccCCeEehhHHHHHHHHHHHhhhchhcccCcccccchhhHHHHhhcCcCCCcccccccccccccce
Q 037332 469 YVLNVLVDKSLVTISCFNKLQMHDLLQEMGQEIVRQESIKEAANRSRLWYHKDIYHVLKKNKGTDAIEGIFLNMSKIRNI 548 (1007)
Q Consensus 469 ~~l~~L~~~~li~~~~~~~~~mH~lv~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~i~l~l~~~~~~ 548 (1007)
.+++.|++++||++. .+++.|||++|+||++++++++ .++++++++|.+++++.++..+++++.+++|++|++.....
T Consensus 470 ~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 470 IGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 789999999999987 6789999999999999999987 78999999999999999999999999999999999999999
Q ss_pred ecChhhhccCccccEEEEecccC---CCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCCccccc
Q 037332 549 HLDSRAFINMSNLRLLKFYTCEY---MSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIW 625 (1007)
Q Consensus 549 ~~~~~~f~~~~~Lr~L~l~~~~~---~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 625 (1007)
.+...+|.+|.+|+.|.++++.. .....+++.++..+|.+||+|+|.+|+++.+|..+.+.+|++|++++|.+..+|
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccc
Confidence 99999999999999999987532 223457888899999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCc
Q 037332 626 EGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPI 705 (1007)
Q Consensus 626 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 705 (1007)
.++..+++|+.|+|++|...+.+|.++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+.+++|+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcc
Q 037332 706 KIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLES 785 (1007)
Q Consensus 706 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 785 (1007)
.|++++|..+..+|....+|+.|++++|.+..+|..+ .+++|++|.+.++.... +...+..+
T Consensus 708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l---------------- 769 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL---------------- 769 (1153)
T ss_pred EEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc----------------
Confidence 9999999999999999899999999999999999866 57888888887754221 11101000
Q ss_pred cccccccCCCCceeccCccc-ccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCC
Q 037332 786 FPEILEKMERLSYMDLSWTK-IKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLN 864 (1007)
Q Consensus 786 ~~~~l~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~ 864 (1007)
.+.....+++|+.|++++|. +..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|..
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~----------- 837 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR----------- 837 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc-----------
Confidence 01112234567777777664 44677777788888888888887776666543 444555555544321
Q ss_pred CCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCC-CCccchhhhcCCCCCCEEeeecC
Q 037332 865 EVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGN-NFETLPASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 865 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~n 943 (1007)
...+|. ...+|+.|+|++|.+..+|.++..+++|+.|+|++| +++.+|..+..+++|+.|++++|
T Consensus 838 -----------L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 838 -----------LRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred -----------cccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 111222 124566777777777777777777777777777763 56666666667777777777777
Q ss_pred CCCCcC
Q 037332 944 YMLQTL 949 (1007)
Q Consensus 944 ~~l~~~ 949 (1007)
+.+..+
T Consensus 904 ~~L~~~ 909 (1153)
T PLN03210 904 GALTEA 909 (1153)
T ss_pred cccccc
Confidence 665544
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-62 Score=576.11 Aligned_cols=596 Identities=26% Similarity=0.337 Sum_probs=408.2
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh---hhcccCceEEEEecchhhhccCcHHHHHHHHHH
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ---NFREFEGKCFVANVREESEKEGVLVRLRERILS 272 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 272 (1007)
||.+..++++.+.|..++. .+++|+||||+||||||+.++++ ++.+|+.++|+. ++..+. ...++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~-~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFT-TRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccccc-HHhHHHHHHH
Confidence 9999999999999987654 89999999999999999999994 678999999997 444566 8899999999
Q ss_pred HHhccccccc---CcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh-cCcccEEE
Q 037332 273 EILDENIKIR---TPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-FGVSNIYK 348 (1007)
Q Consensus 273 ~~~~~~~~~~---~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-~~~~~~~~ 348 (1007)
.+........ ..+++..+.+.|++||++||+||||+..+|+.+..++|....||+|++|||+..|+.. +++...++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 8776433322 2467788999999999999999999999999999999988889999999999999998 88888999
Q ss_pred cCCCChhHHHHHHhhhhcCCC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC-CHHHHHHHHHHhhhC-------C
Q 037332 349 VNGLENHEAFKLFCYYAFKGN-HGPEDLLVLSERVLYYANGNPLALRVLGSFLHQK-NKLDWEIALENLKLI-------C 419 (1007)
Q Consensus 349 l~~L~~~~a~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~-------~ 419 (1007)
++.|+.+|||+||++.||... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|.++...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998763 3335589999999999999999999999999987 667999999987654 1
Q ss_pred CCchHHHHHhhhhccchhhHHHhhhhhcccCCCCH--HHHHHhhcCCCc-------------hhHhHHHHhhccCeEEcc
Q 037332 420 DPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDK--DYVTMSQDDPNF-------------AYYVLNVLVDKSLVTISC 484 (1007)
Q Consensus 420 ~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~~~~~~~-------------~~~~l~~L~~~~li~~~~ 484 (1007)
.+.+..++++|||.||++.|.||+|||.||+++.+ +.++..|+++|| ++.++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 35689999999999999999999999999999976 569999999996 678999999999998764
Q ss_pred C----CeEehhHHHHHHHHHHHhhhchhcccCcccccchhhHHHHhhcCcCCCcccccccccccccceecChhhhccCcc
Q 037332 485 F----NKLQMHDLLQEMGQEIVRQESIKEAANRSRLWYHKDIYHVLKKNKGTDAIEGIFLNMSKIRNIHLDSRAFINMSN 560 (1007)
Q Consensus 485 ~----~~~~mH~lv~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~i~l~l~~~~~~~~~~~~f~~~~~ 560 (1007)
. ..|.|||+|||||..++++-+...... . .....+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~---i---------v~~~~~----------------------------- 512 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQ---I---------VSDGVG----------------------------- 512 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccce---E---------EECCcC-----------------------------
Confidence 2 579999999999999998543211100 0 000000
Q ss_pred ccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCC--ccccccccccccccceee
Q 037332 561 LRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSK--IKQIWEGKKEAFKLKSID 638 (1007)
Q Consensus 561 Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~--i~~l~~~~~~l~~L~~L~ 638 (1007)
+ .+.++.. .+...|...+.+|.+..++.....++|+.|-+..|. +..++..
T Consensus 513 ~--------------~~~~~~~--~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~----------- 565 (889)
T KOG4658|consen 513 L--------------SEIPQVK--SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGE----------- 565 (889)
T ss_pred c--------------ccccccc--chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHH-----------
Confidence 0 0000000 013456666666666666665544455555555543 3333222
Q ss_pred ccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCcc
Q 037332 639 LRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEF 718 (1007)
Q Consensus 639 L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~ 718 (1007)
.|..++.|++|||++|.....+|.+++.|-+|++|++++
T Consensus 566 -----------ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~------------------------------ 604 (889)
T KOG4658|consen 566 -----------FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD------------------------------ 604 (889)
T ss_pred -----------HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC------------------------------
Confidence 134455555555555555666666666666666555543
Q ss_pred CCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCC--CCcccccccccCCCC
Q 037332 719 PKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCS--KLESFPEILEKMERL 796 (1007)
Q Consensus 719 ~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L 796 (1007)
+.+..+|.++.+++.|.+|++..+.....+|.....|++|++|.+..-. .....-..+.++.+|
T Consensus 605 --------------t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 605 --------------TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred --------------CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 3455666666666666666666666555555555556667766665432 111122233444455
Q ss_pred ceeccCcccccccchhhhcCCCCCE----EeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh-h-----hh-cCCC
Q 037332 797 SYMDLSWTKIKELKSSIDHLERLRN----LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-S-----IA-HLNE 865 (1007)
Q Consensus 797 ~~L~l~~n~l~~l~~~~~~l~~L~~----L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~-----~~-~l~~ 865 (1007)
+.+.+..... .+-..+..++.|.. +.+.+ ......+..+..+.+|+.|.+.++.+.+... . .. .+++
T Consensus 671 ~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 671 ENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 5444433222 11111222222222 22212 1223344456666777777777766653211 0 01 1345
Q ss_pred CCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCC-CchhhCCCCCcCEEEccCCCCc
Q 037332 866 VKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIRE-IPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 866 L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
+..+.+.+|.....+.+....++|+.|.+..|...+ +......+..+..+.+..+.+.
T Consensus 749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 555555666666666666667788888888876553 3333344444554444444433
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=8.9e-40 Score=303.85 Aligned_cols=154 Identities=32% Similarity=0.506 Sum_probs=141.1
Q ss_pred CCCccccEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHH
Q 037332 14 NSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDE 92 (1007)
Q Consensus 14 ~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~e 92 (1007)
+...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 4567899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEEeeCCCccccc-cCchHHHHHHHHHHhccChHHHHHHHHHHHhhccCCCCCCCC-CchHHH
Q 037332 93 LVKILECKNMNDQVVVPVFYHVDPSDVRKQ-TGSFGDAFSKLEQQFTEMPEKVQLWRAVLTEASNLSGWDSTN-IRSEAQ 170 (1007)
Q Consensus 93 l~~~~~~~~~~~~~v~pvf~~v~~~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~ 170 (1007)
|++|++++ +.|+||||+|+|++||+| .|. ...+++++||+||.+++++.|++.+. .++|++
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e 164 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSE 164 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHH
Confidence 99999864 479999999999999997 433 13578999999999999999987653 378999
Q ss_pred HHHHHHHHHHhhhc
Q 037332 171 LVDVIVKDILKKLE 184 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~ 184 (1007)
+|++|++.|.+++-
T Consensus 165 ~i~~iv~~v~k~l~ 178 (187)
T PLN03194 165 VVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-37 Score=393.46 Aligned_cols=444 Identities=20% Similarity=0.220 Sum_probs=268.0
Q ss_pred ccccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeC
Q 037332 537 GIFLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNL 616 (1007)
Q Consensus 537 ~i~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L 616 (1007)
...+|++.+......+.+|..+++|+.|++++|.+.. .++..+.....+|++|++++|++........+++|++|+|
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 3445666554444446678888888888888876421 3444444344567777777776653322335666777777
Q ss_pred CCCCcc-ccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcc
Q 037332 617 PHSKIK-QIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKC 694 (1007)
Q Consensus 617 ~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 694 (1007)
++|.+. .+|..+..+++|++|++++|.+.+.+| .+.++++|++|++++|.....+|..++.+++|++|++++|.....
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 766665 456666666666666666666655555 356666666666666665556666666666666666666655444
Q ss_pred cCCCCC-CCCCcEEeccccccCCccCC---ccCcceEEEeeCCccc-ccccccc------------------------cc
Q 037332 695 FPHDIH-FTSPIKIDISYCVNLTEFPK---ISGNIIVLDLRDSAIE-EVPSSIE------------------------SL 745 (1007)
Q Consensus 695 ~~~~~~-~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~-~lp~~~~------------------------~l 745 (1007)
+|..+. +++|+.|++++|.....+|. ...+|+.|++++|.+. .+|.++. .+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 554433 55666666655543333332 1224445555554443 3444444 44
Q ss_pred ccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc-ccchhhhcCCCCCEEec
Q 037332 746 TTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHLERLRNLKL 824 (1007)
Q Consensus 746 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l 824 (1007)
++|+.|++++|......|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 44555555444444444444555555555555555544455555555555555555555554 44555555566666666
Q ss_pred cCCCCCccCCcccCCCCCCCEEEeccccCc-ccChhhhcCCCCCEEEecCCCCC-cCCcccCCC----------------
Q 037332 825 RECSKLVSLPENLGSLKSLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCRNL-VLPTLLSGL---------------- 886 (1007)
Q Consensus 825 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l---------------- 886 (1007)
++|+..+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|... ..|..+..+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 666666666666777778888888888776 55667777777777777777643 222222233
Q ss_pred -------CCCCEEeccCCCCC-CCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCCCccccc
Q 037332 887 -------CSLTELDLKDCGIR-EIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPELPLRLK 957 (1007)
Q Consensus 887 -------~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~ 957 (1007)
++|+.|++++|+++ .+|..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|.+.+.+|..+..++
T Consensus 468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 34555666666555 35666777888888888888887 6777888888888888888888888887665555
Q ss_pred ccccccccccCCCCCcchhccccccc
Q 037332 958 LLEARNCKQLRSLPELPSCLKGFDAL 983 (1007)
Q Consensus 958 ~L~~~~c~~l~~~~~~p~~l~~L~~L 983 (1007)
.|...++..++..+.+|..+.++..|
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCccc
Confidence 55555555555555666655554433
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-37 Score=338.00 Aligned_cols=264 Identities=31% Similarity=0.476 Sum_probs=208.2
Q ss_pred hhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh--hhcccCceEEEEecchhhhccCcHHHHHHHHHHHHh
Q 037332 198 LNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ--NFREFEGKCFVANVREESEKEGVLVRLRERILSEIL 275 (1007)
Q Consensus 198 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (1007)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+.... ... ...+++.++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~-~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPS-LEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SC-CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccc-ccccccccccccc
Confidence 789999999999886678999999999999999999999998 889998888876332 222 4677788888877
Q ss_pred ccccc----ccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhhcCc-ccEEEcC
Q 037332 276 DENIK----IRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGV-SNIYKVN 350 (1007)
Q Consensus 276 ~~~~~----~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~-~~~~~l~ 350 (1007)
..... ....+....+++.|+++++||||||||+...|+.+...++.++.|++||||||+..++..++. ...|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66332 223457788999999999999999999999999988887777789999999999998876644 6799999
Q ss_pred CCChhHHHHHHhhhhcCCC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC-CHHHHHHHHHHhhhCC------CCc
Q 037332 351 GLENHEAFKLFCYYAFKGN-HGPEDLLVLSERVLYYANGNPLALRVLGSFLHQK-NKLDWEIALENLKLIC------DPD 422 (1007)
Q Consensus 351 ~L~~~~a~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~~------~~~ 422 (1007)
+|+.+||++||.+.++... .......+.+++|+++|+|+|||++++|++|+.+ +..+|..+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999997655 3344556789999999999999999999999543 6678999988765443 356
Q ss_pred hHHHHHhhhhccchhhHHHhhhhhcccCCCC--HHHHHHhhcCCCc
Q 037332 423 IYDVLKVSYNELKAEEKSMFLDIACFFKGED--KDYVTMSQDDPNF 466 (1007)
Q Consensus 423 i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~~~~~~~~ 466 (1007)
+..++.+||+.|+++.|+||+|||+||+++. .+.++.+|.++|+
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 9999999999999999999999999999977 5779999999887
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-36 Score=379.35 Aligned_cols=428 Identities=19% Similarity=0.210 Sum_probs=338.0
Q ss_pred cccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCC-CCCCCC-CccccceeeCC
Q 037332 540 LNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLK-TLPFNF-DPENLIELNLP 617 (1007)
Q Consensus 540 l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~ 617 (1007)
++++.+......+..|.++++|++|++++|.+.. .++..+..+ .+|++|++++|.+. .+|..+ .+++|++|+|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG---KIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccc---cCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 4555554444455667888888888888876421 233333333 47888888888765 456555 78888888888
Q ss_pred CCCcc-ccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCccc
Q 037332 618 HSKIK-QIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCF 695 (1007)
Q Consensus 618 ~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~ 695 (1007)
+|.+. .+|..+..+++|++|++++|.+.+.+| .+.++++|++|++++|.....+|..+..+++|++|++++|.....+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 88877 567778888888888888888776666 4678888888888888777778888888888888888888766666
Q ss_pred CCCCC-CCCCcEEeccccccCCccCC---ccCcceEEEeeCCccc-cccccccccccccEEecCCccccccchhhhhccC
Q 037332 696 PHDIH-FTSPIKIDISYCVNLTEFPK---ISGNIIVLDLRDSAIE-EVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLR 770 (1007)
Q Consensus 696 ~~~~~-~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 770 (1007)
|..+. +++|+.|+++++......|. ...+|+.|++++|.+. .+|..++.+++|+.|++++|.....+|..++.++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 66543 77888888888765544443 3457888888888886 6777888888899999988888888888888888
Q ss_pred ccceEEecCCCCCcccccccccCCCCceeccCccccc-ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEec
Q 037332 771 SLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAE 849 (1007)
Q Consensus 771 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 849 (1007)
+|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 8999999888888888888888999999999999887 677788899999999999998888888888889999999999
Q ss_pred cccCcccChhhhcCCCCCEEEecCCCCC-cCCcccCCCCCCCEEeccCCCCC-CCchhhCCCCCcCEEEccCCCCc-cch
Q 037332 850 RSAISQVPASIAHLNEVKSLSFAGCRNL-VLPTLLSGLCSLTELDLKDCGIR-EIPQDIGSVFALEKIDLSGNNFE-TLP 926 (1007)
Q Consensus 850 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp 926 (1007)
+|.+....+.....++|+.|++++|... ..|..+.++++|+.|+|++|++. .+|..+.++++|++|+|++|.++ .+|
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 9988743333345689999999999854 66778889999999999999998 57889999999999999999998 678
Q ss_pred hhhcCCCCCCEEeeecCCCCCcCCCCc---ccccccccccccccCCCC
Q 037332 927 ASMKQLSRLRYLYLINCYMLQTLPELP---LRLKLLEARNCKQLRSLP 971 (1007)
Q Consensus 927 ~~~~~l~~L~~L~L~~n~~l~~~p~~~---~~L~~L~~~~c~~l~~~~ 971 (1007)
..+..+++|+.|+|++|++.+.+|..+ .+|+.|++.+|+-...+|
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 889999999999999999999999755 455666666655444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.3e-32 Score=289.33 Aligned_cols=358 Identities=27% Similarity=0.375 Sum_probs=221.6
Q ss_pred eEEEecCCCCC--CCCCCC-CccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEeccccc
Q 037332 590 RYFHWHGYPLK--TLPFNF-DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCT 666 (1007)
Q Consensus 590 ~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 666 (1007)
|-.+++||.+. .+|... .++.++-|.|..+++..+|+.++.+.+|++|.+++|++.+..-.++.++.|+.+.+..|+
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 33444444432 455444 556666666666666666666666666666666666665555566666666666666554
Q ss_pred c-cCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc-ccc
Q 037332 667 N-LAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-IES 744 (1007)
Q Consensus 667 ~-~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~ 744 (1007)
. ...+|..+..|..|..|+|+.|. ++..|... ....++-+|+|++|+|+.+|.. +-+
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--------------------E~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--------------------EYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred cccCCCCchhcccccceeeecchhh-hhhcchhh--------------------hhhcCcEEEEcccCccccCCchHHHh
Confidence 3 22356666666677777766653 22222211 1122445666666777777765 456
Q ss_pred cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc--ccchhhhcCCCCCEE
Q 037332 745 LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK--ELKSSIDHLERLRNL 822 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L 822 (1007)
++.|-.|||++| .+..+|+.+..|..|++|.|++|+....--..+..+++|+.|.+++++-+ .+|.++..+.+|..+
T Consensus 149 LtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 149 LTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 666777777764 45566666667777777777776654332233444566666667665543 566667777777777
Q ss_pred eccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCC--
Q 037332 823 KLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIR-- 900 (1007)
Q Consensus 823 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-- 900 (1007)
+++.|+ +..+|+.+-++++|+.|+|++|.++++....+...+|++|+++.|+...+|..++.++.|+.|.+.+|+++
T Consensus 228 DlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 228 DLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence 776543 44566666777777777777777776666666666777777777777777777777777777777777655
Q ss_pred CCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCC---CcccccccccccccccCCCC
Q 037332 901 EIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPE---LPLRLKLLEARNCKQLRSLP 971 (1007)
Q Consensus 901 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~---~~~~L~~L~~~~c~~l~~~~ 971 (1007)
.||++++.+.+|+++..++|++..+|+++..|+.|+.|.|++|++. ++|+ +++.|+.|++.+.+++-.-|
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 4677777777777777777777777777777777777777766543 3554 34555555555555554443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=7.4e-31 Score=277.92 Aligned_cols=357 Identities=20% Similarity=0.233 Sum_probs=290.5
Q ss_pred CCCCceEEEecCCCCCCCCCCC--CccccceeeCCCCCccccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEe
Q 037332 585 LPEELRYFHWHGYPLKTLPFNF--DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKIN 661 (1007)
Q Consensus 585 ~~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~ 661 (1007)
+|...+.|++++|.+..+...+ ++++|++++|..|.++.+|.......+|+.|+|.+|.+..... .++.++.|++||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4567788888888888877553 8899999999999999998888888889999999888765544 467788889999
Q ss_pred cccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc
Q 037332 662 LWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS 741 (1007)
Q Consensus 662 L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~ 741 (1007)
|+.|.+...-..++..-.++++|+|++|..... +. ..| ....+|..|.|+.|.++.+|.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-------------~~------~~F-~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-------------ET------GHF-DSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccc-------------cc------ccc-cccchheeeecccCcccccCHH
Confidence 988765444445666667888888887753221 11 111 2223778889999999999975
Q ss_pred -ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCC
Q 037332 742 -IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERL 819 (1007)
Q Consensus 742 -~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L 819 (1007)
|.++++|+.|+|..|..-..-...|.+|++|+.|.+..|.....-...|-.+.++++|+|+.|++..+.+ ++-+++.|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 6669999999999976544435578999999999999988877767788899999999999999997764 67899999
Q ss_pred CEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCC
Q 037332 820 RNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDC 897 (1007)
Q Consensus 820 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n 897 (1007)
+.|+++.|.+...-++.++..++|+.|+|+.|.++.++ ..+..+..|++|.|++|.+..+.+ .|.++++|++|+|++|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 99999999998888899999999999999999999886 457889999999999999877654 6789999999999999
Q ss_pred CCCC-C---chhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCCCCcc--ccccccc
Q 037332 898 GIRE-I---PQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLPELPL--RLKLLEA 961 (1007)
Q Consensus 898 ~l~~-l---p~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p~~~~--~L~~L~~ 961 (1007)
.++- + ...+.++++|+.|.+.||+++++|. .|.++++|+.|+|.+|.+-..-|+.+. .|++|.+
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 9884 2 3346779999999999999999985 589999999999999988777776554 4555544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3e-32 Score=276.31 Aligned_cols=384 Identities=21% Similarity=0.289 Sum_probs=291.6
Q ss_pred hhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC-CccccceeeCCCCCccccccccccc
Q 037332 553 RAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF-DPENLIELNLPHSKIKQIWEGKKEA 631 (1007)
Q Consensus 553 ~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l 631 (1007)
.+...+.++..|+.++|.+ ..+|..+... .+++.|+++.|.+..+|..+ .+..|..|+..+|++.++|.++..+
T Consensus 85 ~aig~l~~l~~l~vs~n~l----s~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~ 159 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNKL----SELPEQIGSL-ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNL 159 (565)
T ss_pred HHHHHHHHHHHhhcccchH----hhccHHHhhh-hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHH
Confidence 3455666677777776654 3444444433 36788888888888888777 7888888999999999999998888
Q ss_pred cccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccc
Q 037332 632 FKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISY 711 (1007)
Q Consensus 632 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 711 (1007)
.+|..+++.+|++....|+.-.+..|++|+...| .++.+|..++.|.+|..|++..|+ +..+|..-++..|.+++++.
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc
Confidence 8999999999888777777666888999988775 477888899999999999988875 55667555577777777765
Q ss_pred cccCCccC----CccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCc---
Q 037332 712 CVNLTEFP----KISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLE--- 784 (1007)
Q Consensus 712 ~~~l~~~~----~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--- 784 (1007)
. .+..+| +...++.+||+++|.++++|..+.-+++|++||+++| .+..+|..++++ +|+.|-+.||+.-+
T Consensus 238 N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 238 N-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred c-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHH
Confidence 3 333333 2445778999999999999999999999999999985 456788888888 88888888875210
Q ss_pred ----------------------------------cccc----ccccCCCCceeccCcccccccc----------------
Q 037332 785 ----------------------------------SFPE----ILEKMERLSYMDLSWTKIKELK---------------- 810 (1007)
Q Consensus 785 ----------------------------------~~~~----~l~~l~~L~~L~l~~n~l~~l~---------------- 810 (1007)
..+. ....+.+.+.|++++-+++.+|
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 0000 0112234455555554544444
Q ss_pred ----------hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCC
Q 037332 811 ----------SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLP 880 (1007)
Q Consensus 811 ----------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 880 (1007)
..+..+..+.+.-+..++..+..|..++.+++|..|++++|-+.++|..++.+..|+.|+++.|++..+|
T Consensus 395 fskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP 474 (565)
T KOG0472|consen 395 FSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLP 474 (565)
T ss_pred cccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccch
Confidence 4444444444444444556666777888899999999999999999999999999999999999988888
Q ss_pred cccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 881 TLLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 881 ~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
..+..+..|+.+-.++|++..++. .+.++.+|.+|||.+|.+..+|+.++++.+|++|+|++|++.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 877777778888888899998855 489999999999999999999999999999999999999987
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.7e-31 Score=278.60 Aligned_cols=364 Identities=19% Similarity=0.289 Sum_probs=304.3
Q ss_pred cEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC-CccccceeeCCCCCccccccccccccccceeecc
Q 037332 562 RLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF-DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLR 640 (1007)
Q Consensus 562 r~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~ 640 (1007)
|-.++++|...+ ..+|.+.... ..+++|.+....+..+|... .+.+|+.|.+.||++.++-..++.++.|+.+.++
T Consensus 10 rGvDfsgNDFsg--~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 10 RGVDFSGNDFSG--DRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ecccccCCcCCC--CcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 444555554322 2233333333 46888999999999999877 8999999999999999999999999999999999
Q ss_pred CCcC--CCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCcc
Q 037332 641 YSQY--LTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEF 718 (1007)
Q Consensus 641 ~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~ 718 (1007)
+|++ .+.++++..+..|..|+|+.|. +.+.|..+.+-+++-.|+|+.|. +..+|....
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf------------------ 146 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF------------------ 146 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHH------------------
Confidence 9976 3455578999999999999974 78899999999999999999864 344443221
Q ss_pred CCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCC-CcccccccccCCCCc
Q 037332 719 PKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSK-LESFPEILEKMERLS 797 (1007)
Q Consensus 719 ~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~ 797 (1007)
-....|-.|+|++|.++.+|+.+..+.+|++|+|++|.....--..+-.+++|+.|.+++.+. +..+|..+..+.+|.
T Consensus 147 -inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 147 -INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred -HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 112245678899999999999999999999999999876543323344577788888888655 356888999999999
Q ss_pred eeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCC--
Q 037332 798 YMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR-- 875 (1007)
Q Consensus 798 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-- 875 (1007)
.+|++.|.+..+|..+.++++|+.|+|++|.+.. +.-..+...+|++|+++.|+++.+|+.+..+++|+.|.+.+|+
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 9999999999999999999999999999987643 4445566678999999999999999999999999999999998
Q ss_pred CCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCC
Q 037332 876 NLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 876 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
...+|+.++.+.+|+.+..++|.+.-+|+++..|+.|+.|.|++|.+.++|+.+.-++.|+.|++.+|+.+-.-|
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999987666
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.8e-31 Score=269.31 Aligned_cols=427 Identities=23% Similarity=0.308 Sum_probs=271.9
Q ss_pred hhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC-CccccceeeCCCCCccccccccccc
Q 037332 553 RAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF-DPENLIELNLPHSKIKQIWEGKKEA 631 (1007)
Q Consensus 553 ~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l 631 (1007)
+....-..|+.|.+++|.+ .++..++..++ .+.+|..++|.+..+|..+ .+..++.|+.++|++..+|..+..+
T Consensus 39 e~wW~qv~l~~lils~N~l----~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDL----EVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSL 113 (565)
T ss_pred hhhhhhcchhhhhhccCch----hhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhh
Confidence 3344445566666666654 33334444442 5777777888887777766 7777888888888888888888888
Q ss_pred cccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccc
Q 037332 632 FKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISY 711 (1007)
Q Consensus 632 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 711 (1007)
.+|+.|++++|.+....++++.+..|+.|+..+|+ +..+|.++.++.+|..|++.+|......|..+.+..|++++...
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 88888888888777777777777778777777654 55667777777777777777765444444444566666666543
Q ss_pred cccCCccCCccC---cceEEEeeCCccccccccccccccccEEecCCccccccchhhhh-ccCccceEEecCCCCCcccc
Q 037332 712 CVNLTEFPKISG---NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSIC-KLRSLYWLYLNNCSKLESFP 787 (1007)
Q Consensus 712 ~~~l~~~~~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~ 787 (1007)
..++.+|..++ +|..|++..|.+..+| .|.++..|..|+++.| .++.+|..++ ++.+|..|++..| .++..|
T Consensus 193 -N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~P 268 (565)
T KOG0472|consen 193 -NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVP 268 (565)
T ss_pred -hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCc
Confidence 23455555433 4556677777777777 5777777777777664 4556666555 6777777777774 455677
Q ss_pred cccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCc------------------------------------
Q 037332 788 EILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLV------------------------------------ 831 (1007)
Q Consensus 788 ~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~------------------------------------ 831 (1007)
..+..+.+|..||+++|.++.+|.+++++ .|+.|.+.||+.-+
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 77777777777777777777777777777 77777777765210
Q ss_pred -cCCc----ccCCCCCCCEEEeccccCcccChhhhcCCC---CCEEEecCCC------------------------CCcC
Q 037332 832 -SLPE----NLGSLKSLVYIEAERSAISQVPASIAHLNE---VKSLSFAGCR------------------------NLVL 879 (1007)
Q Consensus 832 -~~~~----~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~---L~~L~l~~~~------------------------~~~~ 879 (1007)
..|. ....+.+.++|++++-+++.+|+....-.. ....++++|+ +...
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 0000 011233455566665555555543322111 3334444443 3444
Q ss_pred CcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCccccccc
Q 037332 880 PTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLL 959 (1007)
Q Consensus 880 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L 959 (1007)
|..++.+++|..|+|++|-+.++|.+++.+..|+.|++++|.|..+|..+..+..|+.+-.++|++...-|..+..++.|
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 55567788888888888888888888888888888888888888888777666666666666564433333334444444
Q ss_pred ccccccc--cCCCCCcchhccccccccccCCCc
Q 037332 960 EARNCKQ--LRSLPELPSCLKGFDALELKIPPQ 990 (1007)
Q Consensus 960 ~~~~c~~--l~~~~~~p~~l~~L~~L~~~~~~~ 990 (1007)
...|..+ ++.+|.....+.++..|+...+++
T Consensus 508 ~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 4444332 333444444445555555555443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.5e-29 Score=262.40 Aligned_cols=365 Identities=18% Similarity=0.186 Sum_probs=234.2
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC--CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF--DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L 616 (1007)
.+|++.++..+++...|.++.||+.+.+.+|++ ..+| .+.....+|+.|++.+|.+.++.+.- .++.|+.|||
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L----t~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL----TRIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchh----hhcc-cccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 467777777777777788888888888777664 2222 22223345777777777777766543 5677777777
Q ss_pred CCCCccccccc-cccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcc
Q 037332 617 PHSKIKQIWEG-KKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKC 694 (1007)
Q Consensus 617 ~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 694 (1007)
+.|.|..++.. +..-.++++|+|++|.+.+.-. .|.++.+|-.|.|+.|......+..|.+|++|+.|+|..|..-..
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 77777777643 3444677777777777655433 466666777777777765555555666677777777766541110
Q ss_pred cCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc-ccccccccEEecCCccccccchhhhhccCccc
Q 037332 695 FPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKSLSTSICKLRSLY 773 (1007)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 773 (1007)
... -.....+|+.|.+..|+|..+.+. |..+.++++|+|..|+....-..++.+|++|+
T Consensus 237 --e~l------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 237 --EGL------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred --hhh------------------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence 000 012233555666666777766654 66677777777777665555555566777777
Q ss_pred eEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEecccc
Q 037332 774 WLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSA 852 (1007)
Q Consensus 774 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 852 (1007)
.|+++.|.+...-++.+...++|+.|+|++|.++.+++ ++..+..|++|+|++|.....-...|..+++|+.|+|+.|.
T Consensus 297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 77777766666666666777777777777777776653 56667777777777766554444556667777777777776
Q ss_pred Cc----ccChhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccC------C
Q 037332 853 IS----QVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSG------N 920 (1007)
Q Consensus 853 l~----~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~------n 920 (1007)
+. +-...|..+++|+.|.+.+|++..+|. .|.++++|+.|+|.+|.|..| |..|..+ .|++|.+.. |
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 65 112335567777777777777766665 677777777777777777765 5556655 666666543 4
Q ss_pred CCccchhhh
Q 037332 921 NFETLPASM 929 (1007)
Q Consensus 921 ~l~~lp~~~ 929 (1007)
++.-++.|+
T Consensus 456 ql~Wl~qWl 464 (873)
T KOG4194|consen 456 QLKWLAQWL 464 (873)
T ss_pred cHHHHHHHH
Confidence 454555554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-29 Score=279.45 Aligned_cols=405 Identities=20% Similarity=0.229 Sum_probs=263.1
Q ss_pred hhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC-CccccceeeCCCCCcccccccccc
Q 037332 552 SRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF-DPENLIELNLPHSKIKQIWEGKKE 630 (1007)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~ 630 (1007)
-++..+.-+|+.|++++|.+ ..+|..+..+ .+|+.|.++.|-+.++|... ++.+|++|+|.+|.++.+|.++..
T Consensus 38 l~~~~~~v~L~~l~lsnn~~----~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQI----SSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred hHHhhheeeeEEeecccccc----ccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence 44555566699999999875 3334344433 47899999999999999766 889999999999999999999999
Q ss_pred ccccceeeccCCcCCCCCCCCCCCCCCcEEecccc-------------------cccCCCCcccccCCCccEEEecCCCC
Q 037332 631 AFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNC-------------------TNLAYIPCNIQNFINLGVLCFRGCKS 691 (1007)
Q Consensus 631 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~~~~l~~~~~~l~~L~~L~l~~~~~ 691 (1007)
+.+|++|++++|.+...++.+..+..++.+..++| .....++..+..+.+ .|+|+.|..
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 99999999999987665554455555555555544 333334444444444 466655543
Q ss_pred C----------cccCC--------CCCCCCCcEEeccccccCCccCC-ccCcceEEEeeCCccccccccccccccccEEe
Q 037332 692 L----------KCFPH--------DIHFTSPIKIDISYCVNLTEFPK-ISGNIIVLDLRDSAIEEVPSSIESLTTLVKLD 752 (1007)
Q Consensus 692 l----------~~~~~--------~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 752 (1007)
. +.+-. .+..++++.|....|...+..+. .+.+|++++++.|.+..+|+|++.+.+|+.|+
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN 270 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec
Confidence 2 11100 01133445555555544433332 44578999999999999999999999999999
Q ss_pred cCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhc-CC-CCCEEeccCCCCC
Q 037332 753 LSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDH-LE-RLRNLKLRECSKL 830 (1007)
Q Consensus 753 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~-l~-~L~~L~l~~~~~~ 830 (1007)
..+|.. ..+|..+....+|+.|.+..| .+..+|....++++|++|+|..|++..+|..+-. +. .|..|+.+.+...
T Consensus 271 ~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 988765 778888888888998888875 4566777788889999999999998888763321 11 1444444433221
Q ss_pred ccCCc-ccCCCCCCCEEEeccccCc-ccChhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchhhC
Q 037332 831 VSLPE-NLGSLKSLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQDIG 907 (1007)
Q Consensus 831 ~~~~~-~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~l~ 907 (1007)
.+|. .-..++.|+.|.+.+|.++ ..-+.+.++.+|+.|+|++|+...+|. .+.+++.|++|+||+|+++.+|..+.
T Consensus 349 -~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva 427 (1081)
T KOG0618|consen 349 -TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA 427 (1081)
T ss_pred -ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH
Confidence 2221 1123445666666666666 233345556666666666666666665 34566666666666666666666666
Q ss_pred CCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC-cCCC-Cc-cccccccccccccc
Q 037332 908 SVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ-TLPE-LP-LRLKLLEARNCKQL 967 (1007)
Q Consensus 908 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~-~~p~-~~-~~L~~L~~~~c~~l 967 (1007)
.++.|++|...+|++..+| .+..++.|+.+|++.|++.. .+|. .+ ++|+.|++.+.+.+
T Consensus 428 ~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 6666666666666666666 55566666666666665543 2332 33 56666666655543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2e-24 Score=273.30 Aligned_cols=324 Identities=30% Similarity=0.452 Sum_probs=227.7
Q ss_pred CCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCC
Q 037332 654 IPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDS 733 (1007)
Q Consensus 654 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 733 (1007)
..+|++|++.+|. +..++.++..+++|+.|++++|..++.+|....+++|+.|++++|..
T Consensus 610 ~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~------------------- 669 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSS------------------- 669 (1153)
T ss_pred ccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCC-------------------
Confidence 3444455554432 33444444455555555555544444444322233444444433322
Q ss_pred ccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhh
Q 037332 734 AIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSI 813 (1007)
Q Consensus 734 ~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~ 813 (1007)
+..+|.++.++++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+..+|..+
T Consensus 670 -L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 670 -LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred -ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc
Confidence 33566678888899999999998888888765 7889999999999888777754 467899999999998888765
Q ss_pred hcCCCCCEEeccCCCCCc-------cCCcccCCCCCCCEEEecccc-CcccChhhhcCCCCCEEEecCCC-CCcCCcccC
Q 037332 814 DHLERLRNLKLRECSKLV-------SLPENLGSLKSLVYIEAERSA-ISQVPASIAHLNEVKSLSFAGCR-NLVLPTLLS 884 (1007)
Q Consensus 814 ~~l~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~ 884 (1007)
.+++|++|.+.++.... ..+.....+++|+.|++++|. +..+|..++++++|+.|++++|. ...+|...
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 57888888887754211 111122345789999999985 55899999999999999999986 56677755
Q ss_pred CCCCCCEEeccCCC-CCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCC---cccccccc
Q 037332 885 GLCSLTELDLKDCG-IREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPEL---PLRLKLLE 960 (1007)
Q Consensus 885 ~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~---~~~L~~L~ 960 (1007)
++++|+.|+|++|. +..+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.+..+|.. +.+|+.|.
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 78999999999984 4556543 46899999999999999999999999999999999999998854 45677778
Q ss_pred cccccccCCCC--Ccch-------------------hccccccccc--cC---CCceeeEcCCCCCCCCccCC
Q 037332 961 ARNCKQLRSLP--ELPS-------------------CLKGFDALEL--KI---PPQIGICLPGSEIPGWFSNR 1007 (1007)
Q Consensus 961 ~~~c~~l~~~~--~~p~-------------------~l~~L~~L~~--~~---~~~~~~~~p~~~~p~~f~~~ 1007 (1007)
+.+|+++..++ ..|. .+.++-.|+. .+ ......++||.++|+||.||
T Consensus 900 l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr 972 (1153)
T PLN03210 900 FSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHR 972 (1153)
T ss_pred cCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCC
Confidence 89999887543 1221 1112222220 01 11223689999999999987
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=6.8e-26 Score=253.88 Aligned_cols=360 Identities=21% Similarity=0.238 Sum_probs=220.8
Q ss_pred CceEEEecCCCCCCCCCCC-CccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEeccccc
Q 037332 588 ELRYFHWHGYPLKTLPFNF-DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCT 666 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 666 (1007)
+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|...|.+..++.+|++|+|.+|........+..+.+|++|++++|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 4899999999999999877 889999999999999999999999999999999988765555578899999999999975
Q ss_pred ccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceE-EEeeCCcccccccccccc
Q 037332 667 NLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIV-LDLRDSAIEEVPSSIESL 745 (1007)
Q Consensus 667 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~-L~l~~~~i~~lp~~~~~l 745 (1007)
...+|.-+..+..+..+..++|..+..++.. .++.+++........++....+++. |+|++|.+.. ..+..+
T Consensus 126 -f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~--~dls~~ 198 (1081)
T KOG0618|consen 126 -FGPIPLVIEVLTAEEELAASNNEKIQRLGQT----SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEV--LDLSNL 198 (1081)
T ss_pred -cCCCchhHHhhhHHHHHhhhcchhhhhhccc----cchhhhhhhhhcccchhcchhhhheeeecccchhhh--hhhhhc
Confidence 5667777888888888888887444433332 2566666665555566655556665 8888888772 224455
Q ss_pred ccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEecc
Q 037332 746 TTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLR 825 (1007)
Q Consensus 746 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~ 825 (1007)
.+|+.|....|..... ....++|+.|+.+.|......+. ....+|++++++.|++..+|++++.+.+|+.|...
T Consensus 199 ~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred cchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 5555555544332211 11234455555555544422211 12234555555555555555555555555555555
Q ss_pred CCCC----------------------CccCCcccCCCCCCCEEEeccccCcccChhhhc---------------------
Q 037332 826 ECSK----------------------LVSLPENLGSLKSLVYIEAERSAISQVPASIAH--------------------- 862 (1007)
Q Consensus 826 ~~~~----------------------~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~--------------------- 862 (1007)
+|.. +.-+|...+.+++|++|++..|.+..+|+.+..
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 4433 233445555566666666666666655543211
Q ss_pred -----CCCCCEEEecCCCCC-cCCcccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccchhhhcCCCCC
Q 037332 863 -----LNEVKSLSFAGCRNL-VLPTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPASMKQLSRL 935 (1007)
Q Consensus 863 -----l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 935 (1007)
++.|+.|++.+|... ..-..+.++++|+.|+|++|++.++|.. +.+++.|++|+||||.++.+|..+..++.|
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 111222333333311 1111244566677777777777766653 456666777777777777777666667777
Q ss_pred CEEeeecCCCCCcCCC--Cccccccccc
Q 037332 936 RYLYLINCYMLQTLPE--LPLRLKLLEA 961 (1007)
Q Consensus 936 ~~L~L~~n~~l~~~p~--~~~~L~~L~~ 961 (1007)
++|...+|.+ ..+|+ ..++|+.+++
T Consensus 433 ~tL~ahsN~l-~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 433 HTLRAHSNQL-LSFPELAQLPQLKVLDL 459 (1081)
T ss_pred HHHhhcCCce-eechhhhhcCcceEEec
Confidence 7776666643 34553 2234444444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.8e-19 Score=210.54 Aligned_cols=261 Identities=20% Similarity=0.201 Sum_probs=144.1
Q ss_pred ceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEeccccccc
Q 037332 589 LRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNL 668 (1007)
Q Consensus 589 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 668 (1007)
-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt----------------------- 255 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT----------------------- 255 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-----------------------
Confidence 4567777777777776552 4677777777777766542 344555555554433
Q ss_pred CCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccc
Q 037332 669 AYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTL 748 (1007)
Q Consensus 669 ~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L 748 (1007)
.+|.. .++|+.|++++|. +..+|..+.+|+.|++++|.++.+|.. +++|
T Consensus 256 -sLP~l---p~sL~~L~Ls~N~------------------------L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L 304 (788)
T PRK15387 256 -SLPVL---PPGLLELSIFSNP------------------------LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGL 304 (788)
T ss_pred -cccCc---ccccceeeccCCc------------------------hhhhhhchhhcCEEECcCCcccccccc---cccc
Confidence 22211 1234444444332 112222333455666666666666642 3456
Q ss_pred cEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCC
Q 037332 749 VKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECS 828 (1007)
Q Consensus 749 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~ 828 (1007)
+.|++++|... .+|.. ..+|+.|++++|... .+|.. ..+|+.|++++|+++.+|.
T Consensus 305 ~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~LP~----------------- 359 (788)
T PRK15387 305 QELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLASLPT----------------- 359 (788)
T ss_pred ceeECCCCccc-cCCCC---cccccccccccCccc-ccccc---ccccceEecCCCccCCCCC-----------------
Confidence 66666665332 23321 123444455444322 23321 1244444444444444432
Q ss_pred CCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCC
Q 037332 829 KLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGS 908 (1007)
Q Consensus 829 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 908 (1007)
. .++|+.|++++|.+..+|.. +.+|+.|++++|.+..+|.. .++|+.|++++|.++.+|..
T Consensus 360 -------l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--- 420 (788)
T PRK15387 360 -------L---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--- 420 (788)
T ss_pred -------C---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---
Confidence 1 13445555666666555532 24566777777666655542 25677777777777777653
Q ss_pred CCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCC
Q 037332 909 VFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPE 951 (1007)
Q Consensus 909 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~ 951 (1007)
+.+|+.|++++|+++.+|..+..+++|+.|+|++|++.+..|.
T Consensus 421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3456777788888877777777778888888888877766554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=3.7e-19 Score=208.04 Aligned_cols=263 Identities=19% Similarity=0.231 Sum_probs=171.8
Q ss_pred cccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeec
Q 037332 560 NLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDL 639 (1007)
Q Consensus 560 ~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 639 (1007)
+-..|+++++.+ ..+|.. ++.+|+.|.+.+|+++.+|.. +++|++|++++|+++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~L----tsLP~~---l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGL----TTLPDC---LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCC----CcCCcc---hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeec
Confidence 356788888765 234443 345899999999999999964 68999999999999999853 357778888
Q ss_pred cCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccC
Q 037332 640 RYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFP 719 (1007)
Q Consensus 640 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~ 719 (1007)
++|.+.. +|. ...+|+.|++++|. ++.+|
T Consensus 270 s~N~L~~-Lp~--lp~~L~~L~Ls~N~------------------------------------------------Lt~LP 298 (788)
T PRK15387 270 FSNPLTH-LPA--LPSGLCKLWIFGNQ------------------------------------------------LTSLP 298 (788)
T ss_pred cCCchhh-hhh--chhhcCEEECcCCc------------------------------------------------ccccc
Confidence 8776432 221 11334444444432 11222
Q ss_pred CccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCcee
Q 037332 720 KISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYM 799 (1007)
Q Consensus 720 ~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 799 (1007)
..+++|+.|++++|.+..+|... .+|+.|++++|.. ..+|.. ..+|+.|++++|... .+|.. ..+|+.|
T Consensus 299 ~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L 367 (788)
T PRK15387 299 VLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKL 367 (788)
T ss_pred ccccccceeECCCCccccCCCCc---ccccccccccCcc-cccccc---ccccceEecCCCccC-CCCCC---Cccccee
Confidence 22345667777777788777532 4577788888654 345531 247999999997654 45643 3578888
Q ss_pred ccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcC
Q 037332 800 DLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVL 879 (1007)
Q Consensus 800 ~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~ 879 (1007)
++++|.+..+|.. ..+|+.|++ ++|.++.+|.. .++|+.|++++|.+..+
T Consensus 368 ~Ls~N~L~~LP~l---~~~L~~LdL------------------------s~N~Lt~LP~l---~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 368 WAYNNRLTSLPAL---PSGLKELIV------------------------SGNRLTSLPVL---PSELKELMVSGNRLTSL 417 (788)
T ss_pred hhhccccccCccc---ccccceEEe------------------------cCCcccCCCCc---ccCCCEEEccCCcCCCC
Confidence 8888888776642 234444554 44444444432 24566666666666655
Q ss_pred CcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc-cchhhh
Q 037332 880 PTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE-TLPASM 929 (1007)
Q Consensus 880 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~ 929 (1007)
|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+++ ..|..+
T Consensus 418 P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 542 24577788888888888888888888888888888887 334333
No 18
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=7.7e-20 Score=173.26 Aligned_cols=132 Identities=35% Similarity=0.561 Sum_probs=112.7
Q ss_pred EEEcCccccccCchhHHHHHHHHhC--CCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHHHHHHH
Q 037332 21 VFLSFRGEDTRYNFTSHLFAALSRK--KIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDELVKIL 97 (1007)
Q Consensus 21 vfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el~~~~ 97 (1007)
|||||++.|.+..|+.+|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444568999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CeEEEEEEeeCCCccc-cccCchHHHHHHHHHHhccC--hHHHHHHHHHHH
Q 037332 98 ECKNMND--QVVVPVFYHVDPSDVR-KQTGSFGDAFSKLEQQFTEM--PEKVQLWRAVLT 152 (1007)
Q Consensus 98 ~~~~~~~--~~v~pvf~~v~~~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 152 (1007)
++....+ +.|+|+||++.+++++ .+.+.+...+.......... ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 8999999999999999 68888877777666554433 457788988764
No 19
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=5.9e-18 Score=161.28 Aligned_cols=136 Identities=39% Similarity=0.669 Sum_probs=113.5
Q ss_pred cccEEEcCcc-ccccCchhHHHHHHHHhCCCceEecCCCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHHHHHH
Q 037332 18 KFDVFLSFRG-EDTRYNFTSHLFAALSRKKIKTFTDEELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDELVKI 96 (1007)
Q Consensus 18 ~~dvfis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el~~~ 96 (1007)
.|||||||++ ++..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 45567999999999999999999998433333333 999999999999999999999999999999999
Q ss_pred HHHHhc-CCCeEEEEEEeeCCCccccccCchHHHHHHHHHHhccChHHHHHHHHHHHhhc
Q 037332 97 LECKNM-NDQVVVPVFYHVDPSDVRKQTGSFGDAFSKLEQQFTEMPEKVQLWRAVLTEAS 155 (1007)
Q Consensus 97 ~~~~~~-~~~~v~pvf~~v~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (1007)
++.... ...+||||+++..|+.+..+.+.++.++.....++.....+ ..|+.++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 987754 56899999999999889999999999988875555433333 68998877654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.2e-17 Score=192.53 Aligned_cols=247 Identities=25% Similarity=0.349 Sum_probs=172.6
Q ss_pred CCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCc
Q 037332 655 PNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSA 734 (1007)
Q Consensus 655 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~ 734 (1007)
.+...|+++++. +..+|..+. ++|+.|++++|. ++.+|..+ ..+|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l----------------------~~nL~~L~Ls~N~ 231 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNE-LKSLPENL----------------------QGNIKTLYANSNQ 231 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCC-CCcCChhh----------------------ccCCCEEECCCCc
Confidence 345677777753 455665543 467778887763 33444321 2356677777777
Q ss_pred cccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhh
Q 037332 735 IEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSID 814 (1007)
Q Consensus 735 i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~ 814 (1007)
++.+|..+. .+|+.|+|++|... .+|..+. .+|+.|++++|... .+|..+. ++|+.|++++|+++.+|..+.
T Consensus 232 LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp 303 (754)
T PRK15370 232 LTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP 303 (754)
T ss_pred cccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch
Confidence 777776543 46777888776543 5665543 46788888765443 5665443 478888888888887775442
Q ss_pred cCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEec
Q 037332 815 HLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDL 894 (1007)
Q Consensus 815 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L 894 (1007)
++|+.|++++|... .+|..+ .++|+.|++++|.++.+|..+ +++|+.|++++|.+..+|..+ .++|+.|+|
T Consensus 304 --~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 304 --SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDV 374 (754)
T ss_pred --hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEEC
Confidence 46788888887654 345433 267888888888888888655 368999999998887777644 368999999
Q ss_pred cCCCCCCCchhhCCCCCcCEEEccCCCCccchhhh----cCCCCCCEEeeecCCCC
Q 037332 895 KDCGIREIPQDIGSVFALEKIDLSGNNFETLPASM----KQLSRLRYLYLINCYML 946 (1007)
Q Consensus 895 ~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~----~~l~~L~~L~L~~n~~l 946 (1007)
++|.++.+|..+. .+|+.|++++|+++.+|..+ ..++++..|++.+|++.
T Consensus 375 s~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 9999998888764 37889999999998777654 44588899999999875
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.2e-16 Score=188.62 Aligned_cols=226 Identities=22% Similarity=0.346 Sum_probs=173.4
Q ss_pred CCcEEeccccccCCccCC-ccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCC
Q 037332 703 SPIKIDISYCVNLTEFPK-ISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCS 781 (1007)
Q Consensus 703 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 781 (1007)
+...|.+++. .++.+|. .+.+++.|++++|.++.+|..+. ++|++|++++|. +..+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCC-CcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc
Confidence 3456777664 4666775 55689999999999999988664 589999999875 446676543 478999999876
Q ss_pred CCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhh
Q 037332 782 KLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIA 861 (1007)
Q Consensus 782 ~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 861 (1007)
.. .+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.++.+|..+
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l- 323 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL- 323 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc-
Confidence 54 6676553 579999999999998887553 58999999988654 4555443 47888899999988887644
Q ss_pred cCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeee
Q 037332 862 HLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLI 941 (1007)
Q Consensus 862 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~ 941 (1007)
.++|+.|++++|....+|..+. ++|+.|+|++|+++.+|..+ .++|+.|+|++|+++.+|..+. .+|+.|+++
T Consensus 324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQAS 396 (754)
T ss_pred -cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhc
Confidence 3689999999998887876543 68999999999998888765 3689999999999998887764 378899999
Q ss_pred cCCCCCcCCC
Q 037332 942 NCYMLQTLPE 951 (1007)
Q Consensus 942 ~n~~l~~~p~ 951 (1007)
+|++. .+|.
T Consensus 397 ~N~L~-~LP~ 405 (754)
T PRK15370 397 RNNLV-RLPE 405 (754)
T ss_pred cCCcc-cCch
Confidence 98765 5664
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=6.5e-18 Score=172.66 Aligned_cols=372 Identities=16% Similarity=0.132 Sum_probs=222.1
Q ss_pred CccCCCCceEEEecCCCCCCCCCCC--CccccceeeCCCCCcccc-ccccccccccceeeccCCcCCCCCC--CCCCCCC
Q 037332 582 LDYLPEELRYFHWHGYPLKTLPFNF--DPENLIELNLPHSKIKQI-WEGKKEAFKLKSIDLRYSQYLTRIP--EPSEIPN 656 (1007)
Q Consensus 582 l~~~~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~ 656 (1007)
...+|.+...+.++.|.++++|... .+++|+.|||++|+|+.+ |..+..+.+|..|-+.+++..+.+| .|.++..
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 3456778889999999999999764 899999999999999988 7888999999888888855556666 4789999
Q ss_pred CcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCC-CCC-CCCCcEEeccccccCC--ccCCccCc--------
Q 037332 657 LEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPH-DIH-FTSPIKIDISYCVNLT--EFPKISGN-------- 724 (1007)
Q Consensus 657 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~-~~~L~~L~l~~~~~l~--~~~~~~~~-------- 724 (1007)
|+.|.+.-|...-.....+..|++|..|.+-+|. ...++. .+. +..++++.+.....+. .+|.....
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 9999988877666666778888999888887764 333333 222 5556666555433111 11100000
Q ss_pred -----ceEEEeeCCcccccccc-c-cccccccEEecCCccccccch-hhhhccCccceEEecCCCCCcccccccccCCCC
Q 037332 725 -----IIVLDLRDSAIEEVPSS-I-ESLTTLVKLDLSYCTRLKSLS-TSICKLRSLYWLYLNNCSKLESFPEILEKMERL 796 (1007)
Q Consensus 725 -----L~~L~l~~~~i~~lp~~-~-~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 796 (1007)
..-..+.+..+..++.. + ..+..+..=-.+.|......| ..|..|++|++|++++|.....-+.+|..+..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 01111122222222221 0 111111111122333333333 347778888888888877777777778888888
Q ss_pred ceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc------cChh----------
Q 037332 797 SYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ------VPAS---------- 859 (1007)
Q Consensus 797 ~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~------~~~~---------- 859 (1007)
+.|.|..|++..+.. .+.++..|++|+|.+|++....|..|..+.+|.+|.+-.|.+.. +-++
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 888888888876654 56778888888888888877778888888888888776664431 1111
Q ss_pred -hhcCCCCCEEEecCCCCCcC----Ccc---------cCCCCCCCE-EeccCCCCCCCchhhCCCCCcCEEEccCCCCcc
Q 037332 860 -IAHLNEVKSLSFAGCRNLVL----PTL---------LSGLCSLTE-LDLKDCGIREIPQDIGSVFALEKIDLSGNNFET 924 (1007)
Q Consensus 860 -~~~l~~L~~L~l~~~~~~~~----~~~---------~~~l~~L~~-L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 924 (1007)
.+....++.+.+++...... |+. -..++.+.+ ..-++..+..+|..+ ...-.+|.+.+|.++.
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~ 458 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITS 458 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcc
Confidence 12223455555554432111 110 011122221 222333344444432 1234566677777777
Q ss_pred chhhhcCCCCCCEEeeecCCCCCcCCCCccccccc
Q 037332 925 LPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLL 959 (1007)
Q Consensus 925 lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L 959 (1007)
+|.. .+.+| .+++++|++..---..++++..|
T Consensus 459 vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql 490 (498)
T KOG4237|consen 459 VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL 490 (498)
T ss_pred cCHH--HHhhh-hcccccCceehhhcccccchhhh
Confidence 7765 45566 67777776543322344444333
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=149.66 Aligned_cols=179 Identities=23% Similarity=0.415 Sum_probs=121.5
Q ss_pred cCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEe
Q 037332 769 LRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEA 848 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 848 (1007)
+...+.|.+++| .+..+|..+..+.+|+.|++++|+++++|.+++.++.|+.|++.-|. +..+|..|++++.|+.|++
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 444555556654 33344555666677777777777777777777777777777776543 4456777777777777777
Q ss_pred ccccCc--ccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccch
Q 037332 849 ERSAIS--QVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 849 ~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
.+|++. .+|..|..+..|+.|++++|....+|...+.+.+|+.|.+..|.+.++|..++.++.|++|++.+|.++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 777666 556666677777777777777777777777778888888888888888888888888888888888888887
Q ss_pred hhhcCCC---CCCEEeeecCCCCCcC
Q 037332 927 ASMKQLS---RLRYLYLINCYMLQTL 949 (1007)
Q Consensus 927 ~~~~~l~---~L~~L~L~~n~~l~~~ 949 (1007)
+.+.++. +=+.+.+.+|+....+
T Consensus 190 pel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 190 PELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred hhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6665432 2223444555544433
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.6e-17 Score=146.52 Aligned_cols=179 Identities=20% Similarity=0.336 Sum_probs=137.4
Q ss_pred ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCE
Q 037332 742 IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRN 821 (1007)
Q Consensus 742 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~ 821 (1007)
+..+.+.+.|.+++|+ +..+|+.+..+.+|+.|++.+| ..+.+|..++.+++|+.|+++-|++..+|..++.+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 3455566666666643 3445556667777777777664 3455666777777777777777777778888888888888
Q ss_pred EeccCCCCCc-cCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCC
Q 037332 822 LKLRECSKLV-SLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIR 900 (1007)
Q Consensus 822 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 900 (1007)
|++..|+... .+|..|..++.|+-|++++|.+.-+|..++.+++|+.|.+..|...++|..++.+..|++|.+.+|+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 8888777654 678888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhCCCC---CcCEEEccCCCC
Q 037332 901 EIPQDIGSVF---ALEKIDLSGNNF 922 (1007)
Q Consensus 901 ~lp~~l~~l~---~L~~L~L~~n~l 922 (1007)
.+|..++++. +=+.+.+.+|.+
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 9998876643 223344445543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=1.8e-15 Score=167.18 Aligned_cols=206 Identities=20% Similarity=0.205 Sum_probs=115.5
Q ss_pred cccccccccccEEecCCccccccchhhhhccCc---cceEEecCCCCCc----ccccccccC-CCCceeccCccccc---
Q 037332 739 PSSIESLTTLVKLDLSYCTRLKSLSTSICKLRS---LYWLYLNNCSKLE----SFPEILEKM-ERLSYMDLSWTKIK--- 807 (1007)
Q Consensus 739 p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~n~l~--- 807 (1007)
+..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344555666677777666655444444444444 7777777665442 122234444 66677777766665
Q ss_pred --ccchhhhcCCCCCEEeccCCCCCc----cCCcccCCCCCCCEEEeccccCcc-----cChhhhcCCCCCEEEecCCCC
Q 037332 808 --ELKSSIDHLERLRNLKLRECSKLV----SLPENLGSLKSLVYIEAERSAISQ-----VPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 808 --~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
.++..+..+++|++|++++|...+ .++..+..+++|+.|++++|.++. +...+..+++|+.|++++|..
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 233445556667777777665542 122334445566667776666552 233345566677777776664
Q ss_pred CcC--Ccc----cCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCccc-----hhhhcCC-CCCCEEe
Q 037332 877 LVL--PTL----LSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFETL-----PASMKQL-SRLRYLY 939 (1007)
Q Consensus 877 ~~~--~~~----~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-----p~~~~~l-~~L~~L~ 939 (1007)
... ... ....+.|+.|++++|.+++ +...+..+++|+.|++++|.++.- ...+... +.|+.|+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 321 000 1123567777777777652 344455567777777777777622 2233444 5777777
Q ss_pred eecCC
Q 037332 940 LINCY 944 (1007)
Q Consensus 940 L~~n~ 944 (1007)
+.+|+
T Consensus 314 ~~~~~ 318 (319)
T cd00116 314 VKDDS 318 (319)
T ss_pred cCCCC
Confidence 77665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=5.8e-16 Score=158.58 Aligned_cols=245 Identities=20% Similarity=0.254 Sum_probs=182.1
Q ss_pred cCCccCC-ccCcceEEEeeCCcccccccc-ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccc-cc
Q 037332 714 NLTEFPK-ISGNIIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPE-IL 790 (1007)
Q Consensus 714 ~l~~~~~-~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l 790 (1007)
.++++|. .+.....++|..|.|+.+|+. |+.+++|+.|||++|.+...-|..|.++++|..|-+.+++.++.+|. .|
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 4556664 445778999999999999976 89999999999999999999999999999999999988777777764 68
Q ss_pred ccCCCCceeccCcccccccc-hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc---c----------
Q 037332 791 EKMERLSYMDLSWTKIKELK-SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ---V---------- 856 (1007)
Q Consensus 791 ~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---~---------- 856 (1007)
+++.+|+.|.+.-|++..++ ..+..+++|..|.+.+|.....--..+..+.+++.+.+..|.+.. +
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 99999999999999999765 578899999999999877654444477778888888777665221 0
Q ss_pred ChhhhcCC----------------------CCCEE---EecCC-CCCcCCc-ccCCCCCCCEEeccCCCCCCC-chhhCC
Q 037332 857 PASIAHLN----------------------EVKSL---SFAGC-RNLVLPT-LLSGLCSLTELDLKDCGIREI-PQDIGS 908 (1007)
Q Consensus 857 ~~~~~~l~----------------------~L~~L---~l~~~-~~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~l~~ 908 (1007)
|..++... .++.+ ..+.| .....|. .|..+++|++|+|++|.++.+ +.+|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 11111111 11111 11112 2233343 477888999999999988887 456788
Q ss_pred CCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCCCCcccccc
Q 037332 909 VFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLPELPLRLKL 958 (1007)
Q Consensus 909 l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~ 958 (1007)
+..+++|.|..|++..+.. .|.++..|++|+|++|++...-|..+..+..
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 8888999998888887754 4688888999999999888877766544333
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=2.7e-14 Score=157.72 Aligned_cols=225 Identities=20% Similarity=0.185 Sum_probs=164.6
Q ss_pred cceEEEeeCCccc-----cccccccccccccEEecCCcccc------ccchhhhhccCccceEEecCCCCCccccccccc
Q 037332 724 NIIVLDLRDSAIE-----EVPSSIESLTTLVKLDLSYCTRL------KSLSTSICKLRSLYWLYLNNCSKLESFPEILEK 792 (1007)
Q Consensus 724 ~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 792 (1007)
+|+.|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4778888888773 45666777888999999887554 234556777889999999998877655555555
Q ss_pred CCC---CceeccCccccc-----ccchhhhcC-CCCCEEeccCCCCCc----cCCcccCCCCCCCEEEeccccCc-----
Q 037332 793 MER---LSYMDLSWTKIK-----ELKSSIDHL-ERLRNLKLRECSKLV----SLPENLGSLKSLVYIEAERSAIS----- 854 (1007)
Q Consensus 793 l~~---L~~L~l~~n~l~-----~l~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~----- 854 (1007)
+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|...+ .++..+..+++|+.|++++|.++
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 554 999999998887 233456666 899999999998763 23445677788999999999887
Q ss_pred ccChhhhcCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCCCCCCC-chhh-----CCCCCcCEEEccCCCCc
Q 037332 855 QVPASIAHLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDCGIREI-PQDI-----GSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 855 ~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~l-p~~l-----~~l~~L~~L~L~~n~l~ 923 (1007)
.++..+..+++|+.|++++|.... +...+..+++|+.|++++|.+++. ...+ ...+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 234445566799999999987542 334566788999999999988742 1111 12478999999999886
Q ss_pred -----cchhhhcCCCCCCEEeeecCCCCCc
Q 037332 924 -----TLPASMKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 924 -----~lp~~~~~l~~L~~L~L~~n~~l~~ 948 (1007)
.+...+..+++|+++++++|++...
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3445567778999999999987643
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.45 E-value=4.9e-14 Score=125.55 Aligned_cols=87 Identities=30% Similarity=0.545 Sum_probs=74.9
Q ss_pred EEEcCccccccCchhHHHHHHHHhCCCceEecCCCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHHHHHHHHHH
Q 037332 21 VFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDEELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDELVKILECK 100 (1007)
Q Consensus 21 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el~~~~~~~ 100 (1007)
|||||+++|. .|+++|.+.|+++|+++|.|.++.+|+.+..++.+++++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 8999999994 799999999999999999999899999999999999999999999999999999999999988843
Q ss_pred hcCCCeEEEEEEe
Q 037332 101 NMNDQVVVPVFYH 113 (1007)
Q Consensus 101 ~~~~~~v~pvf~~ 113 (1007)
.++.|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 34579999844
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.6e-11 Score=153.93 Aligned_cols=297 Identities=14% Similarity=0.129 Sum_probs=180.5
Q ss_pred cCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 188 ISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 188 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
+|.....+|-|..-.+.+.+ ....+++.|+|++|.||||++..+.++ ++.++|+. +...... ...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d~~---~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESDNQ---PERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCcccCC---HHHHH
Confidence 56667788888866665543 235789999999999999999998864 23577775 3322111 23333
Q ss_pred HHHHHHHhccccc-----------ccCcchHHH---HHHHh-C-CCcEEEEEecCCCchh--hH-HHhcCCCCCCCCCeE
Q 037332 268 ERILSEILDENIK-----------IRTPNLSEC---IKKRL-R-QMDVFIVLDDVNKVGQ--LD-YLAGGLDQFGPGSKI 328 (1007)
Q Consensus 268 ~~l~~~~~~~~~~-----------~~~~~~~~~---l~~~l-~-~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~i 328 (1007)
..++..+...... ......... +-..+ . +.+++|||||+...+. .. .+..-+....++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 3343333211000 000112222 22222 2 6789999999966532 22 222222223467789
Q ss_pred EEEeCChhhHhh--c-CcccEEEcC----CCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc
Q 037332 329 IVTTRDKRVLDN--F-GVSNIYKVN----GLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLH 401 (1007)
Q Consensus 329 liTtR~~~v~~~--~-~~~~~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 401 (1007)
|||||...-... . -.....++. +|+.+|+.++|....... ...+.+.++.+.++|.|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999998432111 1 112345666 999999999997665221 1234567899999999999998887765
Q ss_pred CCCHHHHHHHHHHhhhCCCCchHHHHHhh-hhccchhhHHHhhhhhcccCCCCHHHHHHhhcCCCchhHhHHHHhhccCe
Q 037332 402 QKNKLDWEIALENLKLICDPDIYDVLKVS-YNELKAEEKSMFLDIACFFKGEDKDYVTMSQDDPNFAYYVLNVLVDKSLV 480 (1007)
Q Consensus 402 ~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~~fl~~a~f~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li 480 (1007)
..... .......+.......+...+.-. ++.||+..+..++..|+++ .+..+.+..+. +..-....++.|.+.+++
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~-~~~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVT-GEENGQMRLEELERQGLF 307 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHc-CCCcHHHHHHHHHHCCCe
Confidence 43210 01111222111223455554333 7899999999999999986 55555444443 334467889999999996
Q ss_pred EE-cc--CCeEehhHHHHHHHHHHHhhh
Q 037332 481 TI-SC--FNKLQMHDLLQEMGQEIVRQE 505 (1007)
Q Consensus 481 ~~-~~--~~~~~mH~lv~~~~~~~~~~e 505 (1007)
.. .+ ...|+.|++++++.+.....+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 53 22 236999999999998876433
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=1e-09 Score=124.61 Aligned_cols=282 Identities=17% Similarity=0.105 Sum_probs=161.9
Q ss_pred CCCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEEecchhhhccCcHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 266 (1007)
..++.++||++++++|...+... ......+.|+|++|+|||++++.+++++..... ..+.+.++.... . ...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~---~-~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR---T-RYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC---C-HHHH
Confidence 35678999999999999988432 233456789999999999999999998765542 222222332222 2 4566
Q ss_pred HHHHHHHHhcccccc---cCcchHHHHHHHhC--CCcEEEEEecCCCch------hhHHHhcCCCCCCCCCe--EEEEeC
Q 037332 267 RERILSEILDENIKI---RTPNLSECIKKRLR--QMDVFIVLDDVNKVG------QLDYLAGGLDQFGPGSK--IIVTTR 333 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--iliTtR 333 (1007)
+..+..++....... ...+....+.+.+. +++.+||||+++... .+..+....... ++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 667777665422111 11234455556654 456899999997653 244443322211 2333 566666
Q ss_pred ChhhHhhcC-------cccEEEcCCCChhHHHHHHhhhhcC---CCC-CChhHHHHHHHHHHHhCCCchHHHHHhhhh--
Q 037332 334 DKRVLDNFG-------VSNIYKVNGLENHEAFKLFCYYAFK---GNH-GPEDLLVLSERVLYYANGNPLALRVLGSFL-- 400 (1007)
Q Consensus 334 ~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a~~---~~~-~~~~~~~~~~~i~~~~~g~PLal~~~~~~l-- 400 (1007)
+..+..... ....+.+++++.++..+++..++-. ... .++..+.+++......|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 554332211 1246789999999999999877632 111 222233333333333455677776653321
Q ss_pred ---cCC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccC----CCCHHHHH-------HhhcC
Q 037332 401 ---HQK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFK----GEDKDYVT-------MSQDD 463 (1007)
Q Consensus 401 ---~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~~~-------~~~~~ 463 (1007)
.+. +.+++..+..... .....-.+..||.++|..+..++.... ......+. .....
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 4455666555441 223345678999999887766654321 11221111 11111
Q ss_pred C--Cc--hhHhHHHHhhccCeEEc
Q 037332 464 P--NF--AYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 464 ~--~~--~~~~l~~L~~~~li~~~ 483 (1007)
. +. ...+++.|.+.|+|...
T Consensus 335 ~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11 55688899999999764
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=1.6e-12 Score=139.79 Aligned_cols=223 Identities=27% Similarity=0.405 Sum_probs=152.6
Q ss_pred EeeCCccccccccc--cccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccc
Q 037332 729 DLRDSAIEEVPSSI--ESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKI 806 (1007)
Q Consensus 729 ~l~~~~i~~lp~~~--~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 806 (1007)
.|++-.++.+|-.- ..+..-...+++.| ....+|..++.+..|+.+.+..| ....+|..+.++..|++|+|+.|++
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchh
Confidence 34444444444221 22333344555553 33455656666666666666653 3445666777777888888888888
Q ss_pred cccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCC
Q 037332 807 KELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGL 886 (1007)
Q Consensus 807 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 886 (1007)
..+|..++.|+ |+.|.+++| .++.+|..++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....+|..+..+
T Consensus 134 S~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred hcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence 88887777766 677766654 4566777777778888888888888888888888888888888888888888777643
Q ss_pred CCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhh---cCCCCCCEEeeecCCCCCcCCCCccccc
Q 037332 887 CSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASM---KQLSRLRYLYLINCYMLQTLPELPLRLK 957 (1007)
Q Consensus 887 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~---~~l~~L~~L~L~~n~~l~~~p~~~~~L~ 957 (1007)
.|..||+++|+++.||-+|..|..|++|-|.+|.+.+-|..+ +...--|+|+..-|+ .+.-+..+..++
T Consensus 212 -pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~R 283 (722)
T KOG0532|consen 212 -PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLR 283 (722)
T ss_pred -ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccC
Confidence 478888888888888888888888888888888888777554 445556788888874 333333333333
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=4.5e-09 Score=117.99 Aligned_cols=284 Identities=18% Similarity=0.136 Sum_probs=155.0
Q ss_pred CCCCCCccchhhHHHHHHHHhcc--CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC-----ceEEEEecchhhhccC
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCI--GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-----GKCFVANVREESEKEG 261 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~ 261 (1007)
...++.++||++++++|...+.. .......+.|+|++|+|||++++++++.+..... ..+.+.++.....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~--- 87 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT--- 87 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC---
Confidence 34456899999999999998863 1233457899999999999999999997654322 2222333322221
Q ss_pred cHHHHHHHHHHHHhc--ccccc---cCcchHHHHHHHh--CCCcEEEEEecCCCch--h---hHHHhcCC--CCC-CCCC
Q 037332 262 VLVRLRERILSEILD--ENIKI---RTPNLSECIKKRL--RQMDVFIVLDDVNKVG--Q---LDYLAGGL--DQF-GPGS 326 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~--~~~~~---~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--~---~~~l~~~~--~~~-~~gs 326 (1007)
...++..+..++.. ..... ...+....+.+.+ .+++++||||+++... . +..+.... ... +...
T Consensus 88 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 88 -LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred -HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 44556666666531 11111 1122334444545 3567899999998762 1 23333221 111 1233
Q ss_pred eEEEEeCChhhHhhc------C-cccEEEcCCCChhHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 037332 327 KIIVTTRDKRVLDNF------G-VSNIYKVNGLENHEAFKLFCYYAF---KGNHGPEDLLVLSERVLYYANGNP-LALRV 395 (1007)
Q Consensus 327 ~iliTtR~~~v~~~~------~-~~~~~~l~~L~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~ 395 (1007)
.+|.+|......... . ....+.+++++.+|..+++..++- ....-.++..+.+.+++....|.| .|+..
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 445555444332211 0 124689999999999999988863 111122223334455666777887 33333
Q ss_pred Hhhhh-----cCC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccC-C---CCHHHHH----H
Q 037332 396 LGSFL-----HQK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFK-G---EDKDYVT----M 459 (1007)
Q Consensus 396 ~~~~l-----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~~~----~ 459 (1007)
+-... .+. +.+....+...+. .....-....||.++|.++..++..-+ + .....+. .
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 22111 111 3444555444432 233345667889888877766553322 1 1111111 1
Q ss_pred hhcCCCc-------hhHhHHHHhhccCeEEc
Q 037332 460 SQDDPNF-------AYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 460 ~~~~~~~-------~~~~l~~L~~~~li~~~ 483 (1007)
.-...|. ...++..|...|+|+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111121 56678888888998765
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=2.1e-10 Score=120.38 Aligned_cols=195 Identities=19% Similarity=0.215 Sum_probs=99.5
Q ss_pred ccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHH------H-
Q 037332 195 LVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRL------R- 267 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~- 267 (1007)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+..++.-...+|+......... . .... .
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-S-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-H-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-H-HHHHHHHHHHHH
Confidence 799999999999998654 346889999999999999999999874433234444322221110 0 1111 1
Q ss_pred ---HHHHHHHhcccc-------cccCcchHHHHHHHh--CCCcEEEEEecCCCch----h-------hHHHhcCCCCCCC
Q 037332 268 ---ERILSEILDENI-------KIRTPNLSECIKKRL--RQMDVFIVLDDVNKVG----Q-------LDYLAGGLDQFGP 324 (1007)
Q Consensus 268 ---~~l~~~~~~~~~-------~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~----~-------~~~l~~~~~~~~~ 324 (1007)
+.+...+..... ..........+.+.+ .+++++||+||++... . +..+....... .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 111111111110 011112223333333 2356999999997666 1 12222222222 3
Q ss_pred CCeEEEEeCChhhHhh--------cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 325 GSKIIVTTRDKRVLDN--------FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 325 gs~iliTtR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
...+|++.....+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3344455544444332 2233459999999999999998865322 11112345569999999999988764
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=6.1e-11 Score=142.96 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=84.5
Q ss_pred ccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCC--CCCCCCCC--CccccceeeCCCC-Cccccccccccccc
Q 037332 559 SNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYP--LKTLPFNF--DPENLIELNLPHS-KIKQIWEGKKEAFK 633 (1007)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~l~~~~~~l~~ 633 (1007)
...|...+.++.+ .+++..... ++|+.|-+.+|. +..++..| .++.|++|||++| .+.++|..++.|-+
T Consensus 523 ~~~rr~s~~~~~~----~~~~~~~~~--~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKI----EHIAGSSEN--PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccch----hhccCCCCC--CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 5677777777654 233333222 269999999886 77888754 7999999999965 56789999999999
Q ss_pred cceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEec
Q 037332 634 LKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFR 687 (1007)
Q Consensus 634 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~ 687 (1007)
||+|++++..+...++.+.++..|.+|++..+..+..+|.....|.+|++|.+.
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 999999887755444455666666666666655555554444556666666553
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=1.4e-09 Score=118.52 Aligned_cols=266 Identities=15% Similarity=0.104 Sum_probs=150.5
Q ss_pred CCccchhhHHHHHHHHhccC---CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIG---LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
..|||+++.++++..++... ......+.++|++|+|||+||+.+++.+...+. +........ ...+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~~----~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALEK----PGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----EeccchhcC----chhHHHH
Confidence 46999999999999888532 233456889999999999999999998754321 111110011 1111111
Q ss_pred HHHHHhcccc------cccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc--
Q 037332 270 ILSEILDENI------KIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF-- 341 (1007)
Q Consensus 270 l~~~~~~~~~------~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~-- 341 (1007)
+..+..... .....+..+.+...+.+.+..+|+|+..+..++.... .+.+-|..||+...+....
T Consensus 76 -l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 -LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred -HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHh
Confidence 111111100 0001122334444555555666666655444432211 2345556677765433221
Q ss_pred CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc------CC---CHHHHHHHH
Q 037332 342 GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLH------QK---NKLDWEIAL 412 (1007)
Q Consensus 342 ~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~------~~---~~~~w~~~l 412 (1007)
.....+++++++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..++..+. +. +.+.....+
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 1235689999999999999998874322 222345678899999999966554444321 10 111122222
Q ss_pred HHhhhCCCCchHHHHHhhhhccchhhHHHhh-hhhcccCC-CCHHHHHHhhcCCCc-hhHhHH-HHhhccCeEEccCCe
Q 037332 413 ENLKLICDPDIYDVLKVSYNELKAEEKSMFL-DIACFFKG-EDKDYVTMSQDDPNF-AYYVLN-VLVDKSLVTISCFNK 487 (1007)
Q Consensus 413 ~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~~~~~~~-~~~~l~-~L~~~~li~~~~~~~ 487 (1007)
..+...|..+++.++..+. .++.+..+ ...+.+...+..... .+..++ .|++++||.....++
T Consensus 227 ------------~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 227 ------------EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred ------------HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 2245567888888877655 44555432 445555555544443 666677 699999997654443
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=4.8e-12 Score=136.16 Aligned_cols=191 Identities=24% Similarity=0.363 Sum_probs=165.0
Q ss_pred cCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEe
Q 037332 769 LRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEA 848 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 848 (1007)
+.--...+++.|. ...+|.....+..|+.+.+..|.+..+|..++++..|+.|+|+.|. +..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 4444556777754 4567888888889999999999999999999999999999999865 456777777776 899999
Q ss_pred ccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhh
Q 037332 849 ERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPAS 928 (1007)
Q Consensus 849 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 928 (1007)
++|+++.+|..++.++.|..|+.+.|.+..+|..++++.+|+.|++..|++..+|..+..| .|..||+++|++..+|-+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 9999999999999999999999999999999999999999999999999999999999844 599999999999999999
Q ss_pred hcCCCCCCEEeeecCCCCCcCC------CCcccccccccccc
Q 037332 929 MKQLSRLRYLYLINCYMLQTLP------ELPLRLKLLEARNC 964 (1007)
Q Consensus 929 ~~~l~~L~~L~L~~n~~l~~~p------~~~~~L~~L~~~~c 964 (1007)
|.++..|++|.|.+||+.. -| +...-.+.|++.-|
T Consensus 230 fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 9999999999999998654 33 22344677777777
No 37
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=9.2e-10 Score=108.44 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=87.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccC-----ceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFE-----GKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIK 291 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 291 (1007)
|++.|+|.+|+||||+++.++.++..... ...++...+....... ...+...+......... .....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~-----~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN-SRSLADLLFDQLPESIA-----PIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc-cchHHHHHHHhhccchh-----hhHHHHH
Confidence 57899999999999999999998755432 2344444444333222 22333334333322211 1111222
Q ss_pred HH-hCCCcEEEEEecCCCchh---------hHHHh-cCCCC-CCCCCeEEEEeCChhhHh---hcCcccEEEcCCCChhH
Q 037332 292 KR-LRQMDVFIVLDDVNKVGQ---------LDYLA-GGLDQ-FGPGSKIIVTTRDKRVLD---NFGVSNIYKVNGLENHE 356 (1007)
Q Consensus 292 ~~-l~~kr~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~iliTtR~~~v~~---~~~~~~~~~l~~L~~~~ 356 (1007)
.. .+.++++||+|++++... +..+. .-+.. ..++.+++||+|...... .......+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 257899999999975544 11222 11221 247899999999887622 23344689999999999
Q ss_pred HHHHHhhhh
Q 037332 357 AFKLFCYYA 365 (1007)
Q Consensus 357 a~~Lf~~~a 365 (1007)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.7e-11 Score=119.93 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEecc
Q 037332 816 LERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLK 895 (1007)
Q Consensus 816 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~ 895 (1007)
...|++|++++|.+ ..+.++..-+|.++.|++++|.+..+.. +..+++|+.|++++|....+..|-..+-|.+.|.|+
T Consensus 283 Wq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34566667766543 2344455556677777777777776654 677778888888887777766666677778888888
Q ss_pred CCCCCCCchhhCCCCCcCEEEccCCCCccchh--hhcCCCCCCEEeeecCCCCCcC
Q 037332 896 DCGIREIPQDIGSVFALEKIDLSGNNFETLPA--SMKQLSRLRYLYLINCYMLQTL 949 (1007)
Q Consensus 896 ~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~l~~~ 949 (1007)
.|.+.++ .+++.+-+|..||+++|++..+.. +++++|.|+.|.|.+||+.+..
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 8877665 456777888888888888876643 5788888888888888876643
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.2e-10 Score=130.17 Aligned_cols=197 Identities=28% Similarity=0.440 Sum_probs=142.0
Q ss_pred EEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCC-CCceeccCcccccccchhhhcCCCCCEEeccCCC
Q 037332 750 KLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKME-RLSYMDLSWTKIKELKSSIDHLERLRNLKLRECS 828 (1007)
Q Consensus 750 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~ 828 (1007)
.+++..+...... ..+..++.++.|.+.++. ...++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 4555554332222 224445667777777644 334555555563 7888888888888887777888888888888766
Q ss_pred CCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCC
Q 037332 829 KLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGS 908 (1007)
Q Consensus 829 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 908 (1007)
.. .+|...+.++.|+.|++++|.+..+|.....+..|++|.+++|.....+..+..+.++..|.+.+|++..++..++.
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 44 34444447778888888888888888766666778888888887666666677788888888888888877777888
Q ss_pred CCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCC
Q 037332 909 VFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 909 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
+++|+.|++++|.++.++. +..+.+|+.|++++|.+....|
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 8888888888888888775 7788888888888887766555
No 40
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=8.9e-09 Score=117.56 Aligned_cols=294 Identities=14% Similarity=0.155 Sum_probs=181.7
Q ss_pred cCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 188 ISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 188 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
+|..+...|-|..-.+.+.+ ..+.|.+.|..++|.|||||+..++... ..-..+.|+..-...++ .....
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wlslde~dnd----p~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLSLDESDND----PARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEeecCCccCC----HHHHH
Confidence 45556778888766665554 2468999999999999999999998843 34455788864333332 34444
Q ss_pred HHHHHHHhccccccc-----------Ccch---HHHHHHHhC--CCcEEEEEecCC---Cchh---hHHHhcCCCCCCCC
Q 037332 268 ERILSEILDENIKIR-----------TPNL---SECIKKRLR--QMDVFIVLDDVN---KVGQ---LDYLAGGLDQFGPG 325 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~-----------~~~~---~~~l~~~l~--~kr~LlVlDdv~---~~~~---~~~l~~~~~~~~~g 325 (1007)
..++..+....+... ...+ ...+..-+. .++..+||||.. ++.- ++-+.... .++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCC
Confidence 444444432111100 0112 222222221 468999999974 2222 44555544 378
Q ss_pred CeEEEEeCChhhHhhcC---cccEEEcC----CCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 037332 326 SKIIVTTRDKRVLDNFG---VSNIYKVN----GLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGS 398 (1007)
Q Consensus 326 s~iliTtR~~~v~~~~~---~~~~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 398 (1007)
-.+|||||...-..... .+...++. .|+.+|+.++|..... .+-.+.-++.+.+..+|-+-|+..++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHH
Confidence 89999999885432210 12334444 5899999999986651 122233468899999999999998888
Q ss_pred hhcCC-CHHHHHHHHHHhhhCCCCchHH-HHHhhhhccchhhHHHhhhhhcccCCCCHHHHHHhhcCCCchhHhHHHHhh
Q 037332 399 FLHQK-NKLDWEIALENLKLICDPDIYD-VLKVSYNELKAEEKSMFLDIACFFKGEDKDYVTMSQDDPNFAYYVLNVLVD 476 (1007)
Q Consensus 399 ~l~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 476 (1007)
.+++. +.+.-...+. .. +..+.+ ...--+|.||+++|..++-+|++..- -+.+...+....-+...++.|.+
T Consensus 236 a~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f--~~eL~~~Ltg~~ng~amLe~L~~ 309 (894)
T COG2909 236 ALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF--NDELCNALTGEENGQAMLEELER 309 (894)
T ss_pred HccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh--hHHHHHHHhcCCcHHHHHHHHHh
Confidence 87733 3322221111 00 111111 11223689999999999999988531 12344444455557778999999
Q ss_pred ccCeEEc--c-CCeEehhHHHHHHHHHHHhhh
Q 037332 477 KSLVTIS--C-FNKLQMHDLLQEMGQEIVRQE 505 (1007)
Q Consensus 477 ~~li~~~--~-~~~~~mH~lv~~~~~~~~~~e 505 (1007)
++|+-+. + .+.|+.|.++.+|.+.....+
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9987532 2 567999999999998877664
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.8e-11 Score=123.28 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=96.0
Q ss_pred cceEEEeeCCccccccc--cccccccccEEecCCcccccc--chhhhhccCccceEEecCCCCCcccccc-cccCCCCce
Q 037332 724 NIIVLDLRDSAIEEVPS--SIESLTTLVKLDLSYCTRLKS--LSTSICKLRSLYWLYLNNCSKLESFPEI-LEKMERLSY 798 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~ 798 (1007)
+|+.+.|+++.+...+. ....|++++.|||+.|-...- +......|++|+.|+++.|...-...+. -..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 44555555555555442 455666777777766533222 2223445666666666665433211111 123445555
Q ss_pred eccCccccc--ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCC
Q 037332 799 MDLSWTKIK--ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 799 L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
|.++.|.++ .+......+|+|+.|++..|.......... ..+..|++|+|++|+.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-----------------------~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-----------------------KILQTLQELDLSNNNL 258 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-----------------------hhhhHHhhccccCCcc
Confidence 555555554 233333445555555555543222111122 2334455555555554
Q ss_pred CcCC--cccCCCCCCCEEeccCCCCCCC--chh-----hCCCCCcCEEEccCCCCccchh--hhcCCCCCCEEeeecCCC
Q 037332 877 LVLP--TLLSGLCSLTELDLKDCGIREI--PQD-----IGSVFALEKIDLSGNNFETLPA--SMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 877 ~~~~--~~~~~l~~L~~L~L~~n~l~~l--p~~-----l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~ 945 (1007)
..++ .....++.|+.|+++.|.+.++ |+. ...+++|+.|+++.|++..++. .+..+++|+.|.+..|++
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 4433 2334555555555555555532 332 2345556666666665544331 344455555555555554
Q ss_pred CC
Q 037332 946 LQ 947 (1007)
Q Consensus 946 l~ 947 (1007)
..
T Consensus 339 n~ 340 (505)
T KOG3207|consen 339 NK 340 (505)
T ss_pred cc
Confidence 43
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=1.9e-09 Score=118.22 Aligned_cols=274 Identities=17% Similarity=0.113 Sum_probs=148.1
Q ss_pred CCCCCccchhhHHHHHHHHhcc---CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCI---GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
...+.|+|+++.++.+..++.. .....+.+.|+|++|+|||++|+.+++.+...+. +...... .. ...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~-~~---~~~- 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPAL-EK---PGD- 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccc-cC---hHH-
Confidence 3456899999999999887753 2234567889999999999999999998754321 1111100 00 111
Q ss_pred HHHHHHHHhcccc------cccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh
Q 037332 267 RERILSEILDENI------KIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN 340 (1007)
Q Consensus 267 ~~~l~~~~~~~~~------~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~ 340 (1007)
+..++..+..... ........+.+...+.+.+..+|+|+..+...+... + .+.+-|..|+|...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~---l---~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD---L---PPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec---C---CCceEEeecCCcccCCHH
Confidence 1111111111000 000011122233333444444445444333222110 1 123445566665433322
Q ss_pred c--CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhhhC
Q 037332 341 F--GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIALENLKLI 418 (1007)
Q Consensus 341 ~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~l~~~ 418 (1007)
. .....+++++++.++..+++.+.+.... .....+.+..|++.|+|.|-.+..+...+. .|..... -...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCC
Confidence 1 1235689999999999999998874432 223346788999999999965544443321 1111100 0000
Q ss_pred CC---CchHHHHHhhhhccchhhHHHhh-hhhcccCC-CCHHHHHHhhcCCCc-hhHhHH-HHhhccCeEEccCC
Q 037332 419 CD---PDIYDVLKVSYNELKAEEKSMFL-DIACFFKG-EDKDYVTMSQDDPNF-AYYVLN-VLVDKSLVTISCFN 486 (1007)
Q Consensus 419 ~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~~~~~~~-~~~~l~-~L~~~~li~~~~~~ 486 (1007)
.. ......+...+..|++..+..+. .+..|..+ ...+.+...+..... .+..++ .|++.+||.....+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 00 11223445667788888877765 55566554 344555555543333 565666 89999999765444
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.7e-11 Score=122.94 Aligned_cols=177 Identities=20% Similarity=0.255 Sum_probs=125.4
Q ss_pred ccCccceEEecCCCCCcccc--cccccCCCCceeccCccccccc---chhhhcCCCCCEEeccCCCCCccCCc-ccCCCC
Q 037332 768 KLRSLYWLYLNNCSKLESFP--EILEKMERLSYMDLSWTKIKEL---KSSIDHLERLRNLKLRECSKLVSLPE-NLGSLK 841 (1007)
Q Consensus 768 ~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~ 841 (1007)
++.+|+...|.+|.. ...+ .....+++++.|||+.|-+..+ -.....+|+|+.|+++.|........ .-..++
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345555555555432 2222 2455677777777777766643 33456778888888887765432211 123567
Q ss_pred CCCEEEeccccCc--ccChhhhcCCCCCEEEecCCC-CCcCCcccCCCCCCCEEeccCCCCCCCc--hhhCCCCCcCEEE
Q 037332 842 SLVYIEAERSAIS--QVPASIAHLNEVKSLSFAGCR-NLVLPTLLSGLCSLTELDLKDCGIREIP--QDIGSVFALEKID 916 (1007)
Q Consensus 842 ~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~ 916 (1007)
.|+.|.++.|+++ .+......+|+|+.|++.+|. ..........+..|++|+|++|++.+.+ ...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 8899999999888 455556778999999999995 3322333456788999999999998876 4568899999999
Q ss_pred ccCCCCccc--hhh-----hcCCCCCCEEeeecCCC
Q 037332 917 LSGNNFETL--PAS-----MKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 917 L~~n~l~~l--p~~-----~~~l~~L~~L~L~~n~~ 945 (1007)
++.|.+.++ |+. ...+++|++|++..|++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 999999844 544 47789999999999987
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=2e-08 Score=107.50 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=105.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH---
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK--- 292 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~--- 292 (1007)
..++.|+|++|+||||+++.+++.+...--..+++.. .... ..+++..+...++..............+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~-~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVD-AEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCC-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999886532111122221 1122 456666666665433221111112223322
Q ss_pred -H-hCCCcEEEEEecCCCch--hhHHHhc---CCCCCCCCCeEEEEeCChhhHhhc----------CcccEEEcCCCChh
Q 037332 293 -R-LRQMDVFIVLDDVNKVG--QLDYLAG---GLDQFGPGSKIIVTTRDKRVLDNF----------GVSNIYKVNGLENH 355 (1007)
Q Consensus 293 -~-l~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~iliTtR~~~v~~~~----------~~~~~~~l~~L~~~ 355 (1007)
. ..+++.++|+||++... .++.+.. ..........|++|.... ..... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2 26788999999998764 3444432 111112223445555432 21111 12346789999999
Q ss_pred HHHHHHhhhhcCCC--CCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 037332 356 EAFKLFCYYAFKGN--HGPEDLLVLSERVLYYANGNPLALRVLGSFL 400 (1007)
Q Consensus 356 ~a~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 400 (1007)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999887653221 1122335778999999999999999888776
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.3e-10 Score=115.19 Aligned_cols=134 Identities=26% Similarity=0.343 Sum_probs=112.5
Q ss_pred ccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEE
Q 037332 791 EKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLS 870 (1007)
Q Consensus 791 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 870 (1007)
...+.|+.+|+++|.|+++..+..-+|.++.|++++|.....- .+..+++|+.|++++|.++++..+-..+-++++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3346788999999999999888888999999999998776532 47788999999999999998877777888999999
Q ss_pred ecCCCCCcCCcccCCCCCCCEEeccCCCCCCC--chhhCCCCCcCEEEccCCCCccchh
Q 037332 871 FAGCRNLVLPTLLSGLCSLTELDLKDCGIREI--PQDIGSVFALEKIDLSGNNFETLPA 927 (1007)
Q Consensus 871 l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~ 927 (1007)
+++|.+..+.. +..+-+|..|++++|+|..+ ...++++|.|+.|.|.+|.+..+|+
T Consensus 359 La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99998766544 66778899999999999875 4578999999999999999987764
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.4e-10 Score=118.25 Aligned_cols=224 Identities=20% Similarity=0.207 Sum_probs=144.2
Q ss_pred cCcceEEEeeCCccc-----cccccccccccccEEecCCcc---ccccch-------hhhhccCccceEEecCCCCCccc
Q 037332 722 SGNIIVLDLRDSAIE-----EVPSSIESLTTLVKLDLSYCT---RLKSLS-------TSICKLRSLYWLYLNNCSKLESF 786 (1007)
Q Consensus 722 ~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~---~~~~l~-------~~~~~l~~L~~L~l~~~~~~~~~ 786 (1007)
..+++.++|++|.+. .+...+.+.++|+..++++-- ....+| ..+..++.|++|+||.|-.....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 345677777777765 234445566677777766521 111222 33445667777777776554333
Q ss_pred c----cccccCCCCceeccCccccccc--------------chhhhcCCCCCEEeccCCCCCc----cCCcccCCCCCCC
Q 037332 787 P----EILEKMERLSYMDLSWTKIKEL--------------KSSIDHLERLRNLKLRECSKLV----SLPENLGSLKSLV 844 (1007)
Q Consensus 787 ~----~~l~~l~~L~~L~l~~n~l~~l--------------~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~ 844 (1007)
+ ..+..+..|++|.|.+|.+... ..-..+-+.|+.+....|..-. .+...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 3 2345567777777777776521 1123455678888777765422 1233566678888
Q ss_pred EEEeccccCcc-----cChhhhcCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCCCCCC-----Cchhh-CC
Q 037332 845 YIEAERSAISQ-----VPASIAHLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDCGIRE-----IPQDI-GS 908 (1007)
Q Consensus 845 ~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l-~~ 908 (1007)
.+.+..|.+.. +-..+.++++|+.|+|.+|..+. +...++.+++|+.|++++|.+.. +...+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 88888887662 23456788888888888887532 23346677889999999998874 33333 44
Q ss_pred CCCcCEEEccCCCCc-----cchhhhcCCCCCCEEeeecCCC
Q 037332 909 VFALEKIDLSGNNFE-----TLPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 909 l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
.|+|++|.+.+|.++ .+-.++...|.|+.|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 788999999999887 2334556688899999999876
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=8.2e-10 Score=125.50 Aligned_cols=176 Identities=28% Similarity=0.473 Sum_probs=98.3
Q ss_pred cceEEEeeCCccccccccccccc-cccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccC
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLT-TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS 802 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 802 (1007)
.+..|++.++.+..+|.....+. +|+.|++++|. ...+|..+ ..+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~------------------------~~l~~L~~L~l~ 171 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL------------------------RNLPNLKNLDLS 171 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhh------------------------hccccccccccC
Confidence 45556666666666665555553 55555555532 22333334 444455555555
Q ss_pred cccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcc
Q 037332 803 WTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTL 882 (1007)
Q Consensus 803 ~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 882 (1007)
+|++..+|.....+++|+.|++++|.. ..+|.....+..|+.|.+++|.+...+..+..+.++..|.+.+|+...++..
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence 555554444444445555555554332 2233333333445555555555455555556666666666666665555666
Q ss_pred cCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccch
Q 037332 883 LSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 883 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
+..+++|+.|++++|.+++++. ++.+.+|+.|++++|.+...+
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 6667777777777777777665 666777777777777666443
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.3e-09 Score=104.99 Aligned_cols=104 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCEEEeccccCcccChhhh-cCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhh-CCCCCcCEEEccC
Q 037332 842 SLVYIEAERSAISQVPASIA-HLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDI-GSVFALEKIDLSG 919 (1007)
Q Consensus 842 ~L~~L~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~ 919 (1007)
.++.|+|.+|.++.+.. ++ .+.+|+.|++++|.+..++. +..++.|+.|++++|.|+++...+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 44555555555554432 32 35566666666666555543 455666777777777776665444 3466777777777
Q ss_pred CCCccch--hhhcCCCCCCEEeeecCCCCC
Q 037332 920 NNFETLP--ASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 920 n~l~~lp--~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
|++..+. ..+..+++|+.|+|.+||...
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 7665443 235566777777777776543
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2e-09 Score=103.76 Aligned_cols=123 Identities=25% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCCEEeccCCCCCccCCcccC-CCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCccc-CCCCCCCEEecc
Q 037332 818 RLRNLKLRECSKLVSLPENLG-SLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLL-SGLCSLTELDLK 895 (1007)
Q Consensus 818 ~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~ 895 (1007)
.+++|+|.+|.+... +.++ .+.+|+.|++++|.++.+. .+..+++|++|++++|.+..+...+ ..+|+|++|+|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 445555555443321 1233 3456666666666666554 3556677777777777766665433 357788888888
Q ss_pred CCCCCCCc--hhhCCCCCcCEEEccCCCCccchh----hhcCCCCCCEEeeecC
Q 037332 896 DCGIREIP--QDIGSVFALEKIDLSGNNFETLPA----SMKQLSRLRYLYLINC 943 (1007)
Q Consensus 896 ~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~~~~l~~L~~L~L~~n 943 (1007)
+|+|.++. ..+..+++|+.|+|.+|.+..-+. .+..+|+|+.||-...
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 88777542 345678888888888888875442 3577888888876543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.5e-08 Score=104.47 Aligned_cols=164 Identities=23% Similarity=0.284 Sum_probs=102.6
Q ss_pred CccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHH
Q 037332 194 GLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSE 273 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1007)
+++|-+..+.++++ .+.+.-..+||++|+||||||+.++......|...- .....++++...+-
T Consensus 31 HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~i~e-- 94 (436)
T COG2256 31 HLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLREIIE-- 94 (436)
T ss_pred hhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHHHHH--
Confidence 45555555554443 245667779999999999999999997766654221 11111444333221
Q ss_pred HhcccccccCcchHHHHHHHhCCCcEEEEEecCC--CchhhHHHhcCCCCCCCCCeEEE--EeCChhhHhh---cCcccE
Q 037332 274 ILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVN--KVGQLDYLAGGLDQFGPGSKIIV--TTRDKRVLDN---FGVSNI 346 (1007)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili--TtR~~~v~~~---~~~~~~ 346 (1007)
+.-+....+++.+|.+|.|. +..+-+.|++... .|.-|+| ||.++...-. .....+
T Consensus 95 --------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 95 --------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred --------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 11123345889999999995 5566777776653 6776666 6777643211 223479
Q ss_pred EEcCCCChhHHHHHHhhhhcCCCCCC-----hhHHHHHHHHHHHhCCCc
Q 037332 347 YKVNGLENHEAFKLFCYYAFKGNHGP-----EDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 347 ~~l~~L~~~~a~~Lf~~~a~~~~~~~-----~~~~~~~~~i~~~~~g~P 390 (1007)
+++++|+.+|-.+++.+.+-.....- ...++....++..++|--
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 99999999999999988442221111 123456677888888865
No 51
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=114.63 Aligned_cols=306 Identities=15% Similarity=0.198 Sum_probs=179.6
Q ss_pred CccchhhHHHHHHHHhccC-CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEe-cchh--hhccCcHHHHHHH
Q 037332 194 GLVGLNSRVEQIKSLLCIG-LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVAN-VREE--SEKEGVLVRLRER 269 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~~~~l~~~ 269 (1007)
.++||+.+++.|...+... .+...++.+.|..|||||+++++|...+.+.+. .|+.. +.+. ..+...+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999988643 345679999999999999999999997755521 11110 0000 0011112223333
Q ss_pred HHHHHhccc------------------------------------ccc---cCcc--------hHHHHHHHh-CCCcEEE
Q 037332 270 ILSEILDEN------------------------------------IKI---RTPN--------LSECIKKRL-RQMDVFI 301 (1007)
Q Consensus 270 l~~~~~~~~------------------------------------~~~---~~~~--------~~~~l~~~l-~~kr~Ll 301 (1007)
+..++.... ... .... ....+.... +.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 333221110 000 0000 112222333 4469999
Q ss_pred EEecCCCchh-----hHHHhcCCC--CC-CCCCeEEEEeCCh--hhHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 302 VLDDVNKVGQ-----LDYLAGGLD--QF-GPGSKIIVTTRDK--RVLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 302 VlDdv~~~~~-----~~~l~~~~~--~~-~~gs~iliTtR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
|+||+.-.+. ++.+..... .+ ....-.+.|.+.. .+.........+.+.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 9999943332 333333222 00 0111222333332 12222223468999999999999999877633222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC-------CHHHHHHHHHHhhhCC-CCchHHHHHhhhhccchhhHHHhh
Q 037332 372 PEDLLVLSERVLYYANGNPLALRVLGSFLHQK-------NKLDWEIALENLKLIC-DPDIYDVLKVSYNELKAEEKSMFL 443 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl 443 (1007)
...+....|+++.+|+|+-+..+-..+... +...|..-...+.... .+.+.+.+..-.+.||...+.++.
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 234567889999999999999888887653 3344554443333222 122555688889999999999999
Q ss_pred hhhcccCCCCHHHHHHhhcCCCc--hhHhHHHHhhccCeEEcc--------CC---eEehhHHHHHHHHHHHhhh
Q 037332 444 DIACFFKGEDKDYVTMSQDDPNF--AYYVLNVLVDKSLVTISC--------FN---KLQMHDLLQEMGQEIVRQE 505 (1007)
Q Consensus 444 ~~a~f~~~~~~~~~~~~~~~~~~--~~~~l~~L~~~~li~~~~--------~~---~~~mH~lv~~~~~~~~~~e 505 (1007)
..||+...++.+.+..++..... +....+.|. .++|.+.+ .. +-..|+.+|+.+.....++
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~-e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQ-EGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhH-hhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 99999999999888887775444 333333343 34444321 11 1267888888887655443
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.79 E-value=6.3e-10 Score=113.60 Aligned_cols=179 Identities=19% Similarity=0.214 Sum_probs=124.0
Q ss_pred ccccccEEecCCccccccchh----hhhccCccceEEecCCCCCccc-------------ccccccCCCCceeccCcccc
Q 037332 744 SLTTLVKLDLSYCTRLKSLST----SICKLRSLYWLYLNNCSKLESF-------------PEILEKMERLSYMDLSWTKI 806 (1007)
Q Consensus 744 ~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~n~l 806 (1007)
.+++|++|+||+|-.....+. -+.++..|++|.|.+|.....- ....+..+.|+++....|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344666666666544333222 2345566666766666543211 12244567899999999988
Q ss_pred ccc-----chhhhcCCCCCEEeccCCCCCc----cCCcccCCCCCCCEEEeccccCc-----ccChhhhcCCCCCEEEec
Q 037332 807 KEL-----KSSIDHLERLRNLKLRECSKLV----SLPENLGSLKSLVYIEAERSAIS-----QVPASIAHLNEVKSLSFA 872 (1007)
Q Consensus 807 ~~l-----~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~ 872 (1007)
..- ...+...+.|+.+.+..|.+.. .+...+..+++|+.|+|.+|-++ .+...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 743 3467778999999998876532 23346788999999999999887 234456778899999999
Q ss_pred CCCCCc-----CCc-ccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCC
Q 037332 873 GCRNLV-----LPT-LLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 873 ~~~~~~-----~~~-~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l 922 (1007)
+|.... +.. .-...|+|+.|.+.+|.++. +..++...+.|+.|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 998432 111 22457899999999999883 445566789999999999998
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=1.3e-07 Score=97.54 Aligned_cols=148 Identities=15% Similarity=0.233 Sum_probs=90.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+.+.|||++|+|||+||+++++....+.....|+... . ....... +.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~-------~~~~~~~--------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-K-------SQYFSPA--------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-H-------hhhhhHH--------------------HHhhcc
Confidence 35789999999999999999999876555555665411 0 0000000 111111
Q ss_pred CCcEEEEEecCCCc---hhhHH-HhcCCCCC-CCCCeEEEEeCC----------hhhHhhcCcccEEEcCCCChhHHHHH
Q 037332 296 QMDVFIVLDDVNKV---GQLDY-LAGGLDQF-GPGSKIIVTTRD----------KRVLDNFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~~-~~gs~iliTtR~----------~~v~~~~~~~~~~~l~~L~~~~a~~L 360 (1007)
+.-+|||||++.. .+|+. +...+... ..|..+||+|.+ +.+...++...+++++++++++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999863 33442 22222211 245666554443 24444455567899999999999999
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 361 FCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 361 f~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
+.+.++...- .-.+++..-|++.+.|..-++.
T Consensus 170 L~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 170 LQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 9998864332 2234566777888877664444
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=3.6e-07 Score=105.42 Aligned_cols=244 Identities=12% Similarity=0.062 Sum_probs=128.2
Q ss_pred cCCCCCCccchhhHHHHHHHHhcc---CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----cC-ceEEEEecchhhh
Q 037332 188 ISTDSDGLVGLNSRVEQIKSLLCI---GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----FE-GKCFVANVREESE 258 (1007)
Q Consensus 188 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~~~~~~~~~~~ 258 (1007)
+...++.+.|||+++++|...|.. +.....++.|+|++|.|||+.++.|.+++... .+ ..+...++.....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 344568899999999999988853 22334577899999999999999999876432 22 2222333322222
Q ss_pred ccCcHHHHHHHHHHHHhccccccc--CcchHHHHHHHh-C--CCcEEEEEecCCCchh--hHHHhcCCCC-CCCCCeEEE
Q 037332 259 KEGVLVRLRERILSEILDENIKIR--TPNLSECIKKRL-R--QMDVFIVLDDVNKVGQ--LDYLAGGLDQ-FGPGSKIIV 330 (1007)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~ili 330 (1007)
...+...+..++.+...... ..+....+...+ . +...+||||+|+.... -+.|...+.+ ...+++|+|
T Consensus 830 ----p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 830 ----PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ----HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 44455555555543332211 112223333333 1 2235899999975431 1122211111 124566554
Q ss_pred --EeCCh--------hhHhhcCcccEEEcCCCChhHHHHHHhhhhcCCC--CCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 037332 331 --TTRDK--------RVLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGN--HGPEDLLVLSERVLYYANGNPLALRVLGS 398 (1007)
Q Consensus 331 --TtR~~--------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 398 (1007)
+|.+. .+...++. ..+..++++.++-.+++..++-... ..+...+-+|+.++...|..-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 23221 12222222 3466799999999999998874321 12233344444444444555566665544
Q ss_pred hhcC--C---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhh
Q 037332 399 FLHQ--K---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFL 443 (1007)
Q Consensus 399 ~l~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl 443 (1007)
.... . ..+....+..++.. .. +.-....||.+.|-.++
T Consensus 985 AgEikegskVT~eHVrkAleeiE~---sr----I~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD---SP----LTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh---hh----HHHHHHcCCHHHHHHHH
Confidence 4321 1 22333333333221 11 22234577877776554
No 55
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=7.5e-08 Score=101.91 Aligned_cols=280 Identities=19% Similarity=0.216 Sum_probs=179.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
..|.+.++|.|||||||++-.+.+ ++..|...+++.+....+++.. +. -.+.....-...+. +.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~-v~---~~~ag~~gl~~~~g--~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPAL-VF---PTLAGALGLHVQPG--DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhH-hH---HHHHhhcccccccc--hHHHHHHHHHH
Confidence 458899999999999999999999 8888998888777766555433 21 12221122111111 23445667777
Q ss_pred CCCcEEEEEecCCCchh-hHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCCCChh-HHHHHHhhhhcCCCCC-
Q 037332 295 RQMDVFIVLDDVNKVGQ-LDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNGLENH-EAFKLFCYYAFKGNHG- 371 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~a~~~~~~- 371 (1007)
.++|.++|+||...... -..+...+....+.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+......
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999999865543 222222222234555788888876432 34567788888776 6889987776321111
Q ss_pred --ChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH----HhhhCC------CCchHHHHHhhhhccchhhH
Q 037332 372 --PEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIALE----NLKLIC------DPDIYDVLKVSYNELKAEEK 439 (1007)
Q Consensus 372 --~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~----~l~~~~------~~~i~~~l~~sy~~L~~~~k 439 (1007)
.........+|.+..+|.|+++..+++..+.-...+...-+. .+.... .......+.+||.=|..-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 122344578899999999999999999988765554433332 222221 12356789999999999999
Q ss_pred HHhhhhhcccCCCCHHHHHHhhcC-----CCc-hhHhHHHHhhccCeEEcc---CCeEehhHHHHHHHHHHHhh
Q 037332 440 SMFLDIACFFKGEDKDYVTMSQDD-----PNF-AYYVLNVLVDKSLVTISC---FNKLQMHDLLQEMGQEIVRQ 504 (1007)
Q Consensus 440 ~~fl~~a~f~~~~~~~~~~~~~~~-----~~~-~~~~l~~L~~~~li~~~~---~~~~~mH~lv~~~~~~~~~~ 504 (1007)
-.|--++.|..++..+........ ..| ....+..+++++++.... .-.++.-+-.+.|+-.+..+
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887776532211111 112 445567788999886553 22455556666666555544
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=8.3e-07 Score=92.25 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=98.8
Q ss_pred CCcc--chhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 193 DGLV--GLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 193 ~~~v--Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
+.|+ +.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++.........+++. +...... . ..+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~---~----~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA---D----PEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh---H----HHH
Confidence 3455 244566777776542 33568899999999999999999997654444344443 2211100 0 001
Q ss_pred HHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch---h-hHHHhcCCCC-CCCCCeEEEEeCChh---------
Q 037332 271 LSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG---Q-LDYLAGGLDQ-FGPGSKIIVTTRDKR--------- 336 (1007)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iliTtR~~~--------- 336 (1007)
.+.+++ .-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 --------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 85 --------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred --------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 011122 2389999997543 2 2233322211 123457888887532
Q ss_pred hHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 337 VLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 337 v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
+...+.....++++++++++...++...+-... ..-..+....+++.+.|+|..+..+.
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 112222235789999999999998876542211 12223556777777888887665543
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.52 E-value=8.9e-07 Score=100.16 Aligned_cols=176 Identities=20% Similarity=0.303 Sum_probs=104.5
Q ss_pred CCCCccchhhHHHH---HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 191 DSDGLVGLNSRVEQ---IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
..+.+||.+..+.. +.+++..+ ....+.++|++|+||||+|+.+++.....|.. +... . .+ ...+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~---~--~~-~~~i- 77 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV---T--SG-VKDL- 77 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc---c--cc-HHHH-
Confidence 34578898887665 77777443 45578889999999999999999876544321 1110 0 11 2111
Q ss_pred HHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEE--EeCChhhH--hh-
Q 037332 268 ERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIV--TTRDKRVL--DN- 340 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili--TtR~~~v~--~~- 340 (1007)
+.+..... .....+++.+|+||+++.. .+.+.+...+. .|..++| ||.+.... ..
T Consensus 78 r~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 78 REVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 11111110 0111457889999999755 34556655543 3555555 34443211 11
Q ss_pred cCcccEEEcCCCChhHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCchHHHHH
Q 037332 341 FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGP-EDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 341 ~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
.....++++.+++.++..+++.+.+....... ....+....+++.++|.+..+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 12236889999999999999987653211111 223456778899999998665433
No 58
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=1.1e-05 Score=86.68 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhcc-----cccCCCCCCccchhhHHHHHHHHhccCC-CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc
Q 037332 173 DVIVKDILKKLES-----VTISTDSDGLVGLNSRVEQIKSLLCIGL-PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG 246 (1007)
Q Consensus 173 ~~i~~~i~~~~~~-----~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 246 (1007)
.-.++.+.+..+. ...|.+...|+||+.++.++...|...+ ...+++.|.|++|+|||||++.+..... .
T Consensus 237 ~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~ 312 (550)
T PTZ00202 237 KVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M 312 (550)
T ss_pred HHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c
Confidence 3445666665441 2356778899999999999999996433 3456999999999999999999997653 2
Q ss_pred eEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh-----C-CCcEEEEEe--cCCCchhhHHHhcC
Q 037332 247 KCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL-----R-QMDVFIVLD--DVNKVGQLDYLAGG 318 (1007)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlD--dv~~~~~~~~l~~~ 318 (1007)
.+++.+.+ + ..++++.++.+++...... ..++.+.|.+.+ . +++.+||+- +-.+..-.-.-.-.
T Consensus 313 ~qL~vNpr------g-~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~ 384 (550)
T PTZ00202 313 PAVFVDVR------G-TEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA 384 (550)
T ss_pred eEEEECCC------C-HHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH
Confidence 25554443 2 5778888888887532211 123444444332 3 667777763 22222211111111
Q ss_pred CCCCCCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhh
Q 037332 319 LDQFGPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 319 ~~~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
+...-.-|+|++----+.+-.. ...-..|-++.++.++|.++-...
T Consensus 385 la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 385 LACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 1122345677765443332111 111257899999999998876544
No 59
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=5.7e-07 Score=83.56 Aligned_cols=120 Identities=22% Similarity=0.276 Sum_probs=76.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+++.|.|+.|+||||+++.++.+.. .-...+++. +..... .... . .+..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~-----~~~~--~-------------~~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD-----RRLA--D-------------PDLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH-----HHHh--h-------------hhhHHHHHHhhc
Confidence 36899999999999999999998765 222233432 221110 0000 0 002233333333
Q ss_pred CCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh------cCcccEEEcCCCChhHH
Q 037332 296 QMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN------FGVSNIYKVNGLENHEA 357 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~------~~~~~~~~l~~L~~~~a 357 (1007)
.++.+++||+|.....|......+-..++..+|++|+........ .|....+++.||+-.|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 477899999999888887776655544567899999988766532 12234679999988763
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.46 E-value=3.8e-06 Score=86.87 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=85.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
..+.|+|..|+|||+||+++++....+.....|+. . .+....+. +.+. .+ .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~----------~~~~~~~~----------------~~~~-~l-~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-L----------QAAAGRLR----------------DALE-AL-E 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-H----------HHhhhhHH----------------HHHH-HH-h
Confidence 46999999999999999999998765544445553 1 11111110 1111 11 1
Q ss_pred CcEEEEEecCCCch---hhH-HHhcCCCC-CCCCCeEEEEeCChh---------hHhhcCcccEEEcCCCChhHHHHHHh
Q 037332 297 MDVFIVLDDVNKVG---QLD-YLAGGLDQ-FGPGSKIIVTTRDKR---------VLDNFGVSNIYKVNGLENHEAFKLFC 362 (1007)
Q Consensus 297 kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~ 362 (1007)
+.-+|||||+.... .|. .+...+.. ...|..||+|++... +...+....++++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 23489999996442 222 22221111 134667999998542 22222234589999999999999999
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 363 YYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
+++.... -.-.++...-|++.++|-.-
T Consensus 173 ~~a~~~~--l~l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 173 ERAQRRG--LALDEAAIDWLLTHGERELA 199 (233)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhCCCCHH
Confidence 8774322 22234556677777776543
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.45 E-value=6.1e-07 Score=99.93 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=100.4
Q ss_pred CCCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
.+.+.|+++.++++.+.+... -...+.+.++|++|+|||++|+++++.....|- ...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~-----~v~------- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI-----RVV------- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE-----ecc-------
Confidence 356899999999998876421 122456899999999999999999998755432 100
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF-- 322 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 322 (1007)
...+....... .. ......+...-...+.+|+||+++... .+..+...+...
T Consensus 189 --~~~l~~~~~g~----~~----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 --GSELVRKYIGE----GA----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --hHHHHHHhhhH----HH----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 01111111000 00 001111222223456899999986531 122333222211
Q ss_pred CCCCeEEEEeCChhhHh-----hcCcccEEEcCCCChhHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 037332 323 GPGSKIIVTTRDKRVLD-----NFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGP-EDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~P 390 (1007)
..+.+||.||....... ....+..++++..+.++..++|..++.+..... .. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 24667888887543222 113456899999999999999998875443222 12 345666677654
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=4.8e-06 Score=91.71 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=104.4
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHHH
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
-+.++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+... +... ++. .. .+...+ ...+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~-~i~-~~-~~~~~~-~~~~~~~i 89 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWREN-FLE-LN-ASDERG-IDVIRNKI 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc-eEE-ec-cccccc-hHHHHHHH
Confidence 356899999999999988643 33457999999999999999999976432 2221 221 10 011111 11111111
Q ss_pred HHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChh-hHhh-cCcccE
Q 037332 271 LSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKR-VLDN-FGVSNI 346 (1007)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~ 346 (1007)
........ .-...+-++++|+++... ..+.+...+....+.+++|+++.... +... ......
T Consensus 90 -~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 90 -KEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred -HHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 11111000 001235689999987553 34455554444455677777764321 1111 112347
Q ss_pred EEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 347 YKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 347 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
+++.+++.++....+...+-.... .-..+.+..+++.++|.+-.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 899999999998888877643322 12345677888899998744
No 63
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.45 E-value=8.3e-07 Score=93.34 Aligned_cols=92 Identities=24% Similarity=0.461 Sum_probs=75.6
Q ss_pred CccccEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccc--------
Q 037332 16 QYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASS-------- 86 (1007)
Q Consensus 16 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s-------- 86 (1007)
....||||||+.. +....++.|--.|+-+|++||+|- .+..|+ +...+.+.|..++.+|.|++|+..+-
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4578999999865 345788888888899999999998 788876 57799999999999999999997542
Q ss_pred hhhHHHHHHHHHHHhcCCCeEEEEEEe
Q 037332 87 KWCLDELVKILECKNMNDQVVVPVFYH 113 (1007)
Q Consensus 87 ~~c~~el~~~~~~~~~~~~~v~pvf~~ 113 (1007)
.|...|+.-++++++ .|+|||..
T Consensus 688 DWVHKEl~~Afe~~K----NIiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQK----NIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhcC----Ceeeeecc
Confidence 477778888888764 39999955
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.42 E-value=2.3e-06 Score=84.19 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=94.6
Q ss_pred CCCCCCccchhhHHHHHHHHhc---cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLC---IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
|..-++|||-+.-+..+.-++. .......-+.+||++|+||||||..+++.....|. +.. . ..... ..+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i~k---~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAIEK---AGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC--S---CHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhhhh---HHH
Confidence 4456789999998888765543 22345677889999999999999999998876663 111 1 00000 111
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCC--------CCCC---------
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQF--------GPGS--------- 326 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~--------~~gs--------- 326 (1007)
+...+.. + +++-+|.+|++... .+-+.+.++...+ ++++
T Consensus 92 --------------------l~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 --------------------LAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --------------------HHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --------------------HHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1111111 2 23446777888533 3334444332211 2222
Q ss_pred --eEEEEeCChhhHhhcC--cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 327 --KIIVTTRDKRVLDNFG--VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 327 --~iliTtR~~~v~~~~~--~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
-|=.|||...+..-+. ..-+.+++..+.+|-.++..+.+-. -..+..++.+.+|++++.|-|--..-+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2335788654433221 2235689999999999999877732 233455678999999999999544433
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=4.7e-06 Score=92.56 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=106.2
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHH-
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRE- 268 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~- 268 (1007)
..+.++|++..++.+.+++..+ ..+.+.++|++|+||||+|+++++.+... +.......++....... ...+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhhhhcC
Confidence 3467899999999999988643 33467899999999999999999876433 22222222221111000 000000
Q ss_pred -HHHHHHhcccccccCcchHHHHHH----Hh-----CCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCChh
Q 037332 269 -RILSEILDENIKIRTPNLSECIKK----RL-----RQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRDKR 336 (1007)
Q Consensus 269 -~l~~~~~~~~~~~~~~~~~~~l~~----~l-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~~~ 336 (1007)
........ .. .........+++ .. ...+-+||+||++.... ...+...+......+++|+||....
T Consensus 89 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 89 PRFAHFLGT-DK-RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cchhhhhhh-hh-hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00000000 00 000001112221 11 13345899999975532 3344433333345677888775432
Q ss_pred -hHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 337 -VLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 337 -v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
+.... .....+++.+++.++..+.+.+.+-.... .-..+.+..+++.++|.+-.+
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 22211 22357889999999999888876533221 123456778888888876443
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.1e-06 Score=93.40 Aligned_cols=189 Identities=17% Similarity=0.099 Sum_probs=109.7
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--ccCceEEEEecc-hhh--hccCcHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--EFEGKCFVANVR-EES--EKEGVLVR 265 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~-~~~--~~~~~~~~ 265 (1007)
..+.++|-+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+..- ... ...+ +.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d-v~- 88 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD-VL- 88 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc-eE-
Confidence 44578999999999988886543 3456799999999999999999997642 222223321100 000 0000 00
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHH-----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCCh-hh
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKR-----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDK-RV 337 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~-~v 337 (1007)
.+..... .. -+..+.+.+. ..+++-++|||+++.. +.++.++..+....+.+.+|++|... .+
T Consensus 89 -------el~~~~~-~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 89 -------EIDAASN-NS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred -------Eeccccc-CC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0000000 00 0011112221 1245668999999755 34677776665444555666555433 33
Q ss_pred Hhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 338 LDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 338 ~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
.... .....+++.+++.++..+.+.+.+-.... ....+.+..|++.++|.+--+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 2221 22468999999999999999887643322 123456788999999988433
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.4e-05 Score=88.60 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=108.0
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC-----c----------------eE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-----G----------------KC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~----------------~~ 248 (1007)
...+.++|-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+..... + ..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 344679999999999999886542 3467889999999999999999987632110 0 00
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 326 (1007)
++. ...... +.. .+++...+... -..+++-++|+|+++... .++.++..+....+..
T Consensus 92 ~~~----~~~~~~-v~~-ir~i~~~~~~~---------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EID----AASRTK-VEE-MREILDNIYYS---------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred Eec----ccccCC-HHH-HHHHHHHHhcC---------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 010 000000 111 11111110000 012345699999998665 3666766665545566
Q ss_pred eEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 327 KIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 327 ~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
++|++|.+.. +... .+....+++.+++.++..+.+...+-... ....++.+..|++.++|.|-.
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 7777765543 3222 12236899999999999988877663322 112235567788899998853
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=2.9e-06 Score=92.62 Aligned_cols=180 Identities=14% Similarity=0.222 Sum_probs=103.9
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc-ccCceEEEEecchhhhccCcHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR-EFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
..-+.++|.+..++.|..++..+ ..+-+.++|++|+||||+|+.+++.+.. .|...+.-.+. ++..+ .. ..+
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~-~~-~vr 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRG-ID-VVR 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccccc-HH-HHH
Confidence 34457899998888888877543 3345779999999999999999998633 33322221111 11111 21 112
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCCh-hhHhh-cCcc
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRDK-RVLDN-FGVS 344 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~ 344 (1007)
............. -.++.-++|||+++.... ...+...+......+++++++... .+... ....
T Consensus 83 ~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 83 NKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 2211111100000 013456899999976543 344444444345667777776543 22111 1112
Q ss_pred cEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 345 NIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
..++++++++++..+.+.+.+-.... .-..+....+++.++|..
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDM 194 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 57899999999999888877633221 122455678888888865
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.4e-05 Score=92.41 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=110.0
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--cCceEEEEecchhhhccCcHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
...+.+||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.+... .... .+..+ ...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~----PCG~C--------~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ----PCGVC--------RAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC----CCccc--------HHH
Confidence 344679999999999999986542 24566799999999999999999875321 1000 00000 000
Q ss_pred HHHHH-------HHhcccccccCcchHHHHHHH----hCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCC
Q 037332 268 ERILS-------EILDENIKIRTPNLSECIKKR----LRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 268 ~~l~~-------~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
+.+.. ++.... ....++..+.+... ..++.-++|||+++.... +..++..+.......++|+||++
T Consensus 80 r~I~~G~h~DviEIDAas-~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS-NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HHHhcCCCceEEEecccc-cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 00000 000000 00001111111111 123455889999986654 67776665544567788887776
Q ss_pred hhhHh-h-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 037332 335 KRVLD-N-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRV 395 (1007)
Q Consensus 335 ~~v~~-~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~ 395 (1007)
.+-.. . ......++++.++.++..+.+.+.+-... .....+....|++.++|.. -|+..
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 64321 1 12236899999999999999987763322 1223456678888998865 44444
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=9.2e-06 Score=93.88 Aligned_cols=177 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
..+.++|.+..++++.+|+..- ....+.+.|+|++|+||||+|+++++++. |+ +...+. ++. . -....+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielna---sd~-r-~~~~i~ 82 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNA---SDQ-R-TADVIE 82 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcc---ccc-c-cHHHHH
Confidence 3457999999999999988532 12267899999999999999999999863 22 222221 111 1 111222
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh------hHHHhcCCCCCCCCCeEEEEeCChh-hHh--
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ------LDYLAGGLDQFGPGSKIIVTTRDKR-VLD-- 339 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iliTtR~~~-v~~-- 339 (1007)
.+........ .....++-+||||+++.... +..+...+. ..+..||+|+.+.. ...
T Consensus 83 ~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 83 RVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2222111110 00113577999999976532 444444333 23445666664432 111
Q ss_pred hcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 340 NFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 340 ~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
.......+++.+++.++....+.+.+...... ...+....|++.++|..-.+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSA 199 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 11234678999999999988887776432221 22456788888898876443
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=3e-05 Score=85.13 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred cCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--cCceEE---EEecchhhhccCc
Q 037332 188 ISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCF---VANVREESEKEGV 262 (1007)
Q Consensus 188 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~---~~~~~~~~~~~~~ 262 (1007)
.|...+.++|.+..++.+.+.+..+. -.+.+.++|+.|+||+|+|..+++.+-.+ ...... ..... .....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c-- 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDH-- 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCC--
Confidence 34455789999999999999886542 24578899999999999999999875321 110000 00000 00000
Q ss_pred HHHHHHHHHHH-------Hh---cccc----cccCcchHHHHHHHh-----CCCcEEEEEecCCCch--hhHHHhcCCCC
Q 037332 263 LVRLRERILSE-------IL---DENI----KIRTPNLSECIKKRL-----RQMDVFIVLDDVNKVG--QLDYLAGGLDQ 321 (1007)
Q Consensus 263 ~~~l~~~l~~~-------~~---~~~~----~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~ 321 (1007)
...+.+... +. .... ....-+.++.+.+.+ .+.+.++|+||++... ....++..+..
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 000111000 00 0000 000011122233333 2456789999997554 35556555544
Q ss_pred CCCCCeEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 322 FGPGSKIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 322 ~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
...++.+|++|.+.+ +... ......+.+.+++.++..+.+...... .. .+....+++.++|.|.....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 445667777776654 3222 223468999999999999999875411 11 1122678999999998655443
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.2e-07 Score=73.36 Aligned_cols=59 Identities=37% Similarity=0.606 Sum_probs=46.7
Q ss_pred CCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCC
Q 037332 887 CSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 887 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~ 945 (1007)
|+|++|++++|+++.+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467888888888888764 56778888888888888887764 578888888888888863
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=8.6e-07 Score=88.94 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=35.7
Q ss_pred CccchhhHHHHHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 194 GLVGLNSRVEQIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 233457899999999999999999999988776
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.38 E-value=1.4e-06 Score=94.44 Aligned_cols=63 Identities=29% Similarity=0.515 Sum_probs=30.5
Q ss_pred hhccCccceEEecCCCCCcccccccccCCCCceeccCc-ccccccchhhhcCCCCCEEeccCCCCCccCC
Q 037332 766 ICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSW-TKIKELKSSIDHLERLRNLKLRECSKLVSLP 834 (1007)
Q Consensus 766 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 834 (1007)
+..+.+++.|++++| .+..+|. -.++|+.|.+++ +.++.+|..+ .++|++|.+++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 334566667777666 3444441 123455555554 3334444333 2355555555554443333
No 75
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=7.9e-06 Score=83.36 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=88.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
....+.|+|..|+|||.|.+++++.+.+..+ ..+.+.. ..+..+.+...+.. .....+++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~--------~~~~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD--------GEIEEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT--------TSHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc--------ccchhhhhh
Confidence 3456889999999999999999998765443 3333332 33333444333332 122344555
Q ss_pred hCCCcEEEEEecCCCchh---hHH-HhcCCCC-CCCCCeEEEEeCChh---------hHhhcCcccEEEcCCCChhHHHH
Q 037332 294 LRQMDVFIVLDDVNKVGQ---LDY-LAGGLDQ-FGPGSKIIVTTRDKR---------VLDNFGVSNIYKVNGLENHEAFK 359 (1007)
Q Consensus 294 l~~kr~LlVlDdv~~~~~---~~~-l~~~~~~-~~~gs~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~ 359 (1007)
+++ -=+|+|||++.... |+. +...+.. ...|.+||+|++... +...+...-+++++++++++..+
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 553 33788999965432 222 2211111 135778999995442 11223344589999999999999
Q ss_pred HHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 360 LFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 360 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
++.+++-... ..-.++++.-+++.+.+..-.+.
T Consensus 174 il~~~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 174 ILQKKAKERG--IELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhC--CCCcHHHHHHHHHhhcCCHHHHH
Confidence 9998874322 22334566666666655544333
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=4.7e-06 Score=86.42 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=93.8
Q ss_pred CCcc-chhhHH-HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 193 DGLV-GLNSRV-EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 193 ~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
++|+ |...+. ..+.++.. .....+.+.|+|..|+|||+||+++++.....-....++. ... ....+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~----------~~~~~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS----------PLLAF 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------hHHHH
Confidence 4444 554443 34444433 2233467889999999999999999997643322233443 111 00000
Q ss_pred HHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCC-CCCC-eEEEEeCChhhHh-------
Q 037332 271 LSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQF-GPGS-KIIVTTRDKRVLD------- 339 (1007)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs-~iliTtR~~~v~~------- 339 (1007)
... ...-++|+||++.... .+.+...+... ..+. .+|+|++......
T Consensus 86 ---------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 86 ---------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred ---------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 001 1234788999965432 22332222211 2344 3666666432211
Q ss_pred -hcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 037332 340 -NFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFL 400 (1007)
Q Consensus 340 -~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 400 (1007)
.+.....++++++++++-..++.+.+-... ..-.++....+++...|++..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122236889999999887777665432111 22234566777888888887776555443
No 77
>PRK09087 hypothetical protein; Validated
Probab=98.37 E-value=3.2e-06 Score=86.54 Aligned_cols=138 Identities=10% Similarity=0.065 Sum_probs=83.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+.+.|||+.|+|||+|++.++.... ..|+.. ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 35689999999999999999887632 223321 0111111110 01
Q ss_pred CCcEEEEEecCCCc----hhhHHHhcCCCCCCCCCeEEEEeCC---------hhhHhhcCcccEEEcCCCChhHHHHHHh
Q 037332 296 QMDVFIVLDDVNKV----GQLDYLAGGLDQFGPGSKIIVTTRD---------KRVLDNFGVSNIYKVNGLENHEAFKLFC 362 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~iliTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 362 (1007)
+ -+|++||++.. +.+-.+..... ..|..||+|++. ++....+....+++++++++++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999543 22222222211 347789998873 2333334455789999999999999999
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 363 YYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
+++-.. ...-.+++..-|++.+.|..-++..
T Consensus 164 ~~~~~~--~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADR--QLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHc--CCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 887332 2223356667777777776655543
No 78
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.9e-07 Score=105.77 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=84.8
Q ss_pred CCCEEEeccccCc-ccChhhhcCCCCCEEEecCCCCC-cCCcccCCCCCCCEEeccCCCCC-CCchhhCCCCCcCEEEcc
Q 037332 842 SLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCRNL-VLPTLLSGLCSLTELDLKDCGIR-EIPQDIGSVFALEKIDLS 918 (1007)
Q Consensus 842 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 918 (1007)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|+++ .+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877 67777888888888888888754 67777888888888888888887 578888888888888888
Q ss_pred CCCCc-cchhhhcC-CCCCCEEeeecCCCCCcCCC
Q 037332 919 GNNFE-TLPASMKQ-LSRLRYLYLINCYMLQTLPE 951 (1007)
Q Consensus 919 ~n~l~-~lp~~~~~-l~~L~~L~L~~n~~l~~~p~ 951 (1007)
+|+++ .+|..+.. +.++..+++.+|+.+...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 88887 77777654 34667788888876665553
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.9e-05 Score=90.32 Aligned_cols=178 Identities=17% Similarity=0.105 Sum_probs=108.5
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc---------------------CceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF---------------------EGKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 248 (1007)
...+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-... ...+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 344689999999999999986543 246888999999999999999998753211 0111
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 326 (1007)
.+.. +...+ +..+ +.+..... ..-..+++-++|||+|+... ....++..+.....+.
T Consensus 91 EIDA----As~~~-VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 91 EIDA----ASRTK-VEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred Eecc----cccCC-HHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 1100 00000 1111 11111000 00113566789999997653 4666666655444667
Q ss_pred eEEEEeCChhhHh-h-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 327 KIIVTTRDKRVLD-N-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 327 ~iliTtR~~~v~~-~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
++|++|.+..-.. . ......+++.+++.++..+.+.+.+-... .....+....|++.++|.+-
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLR 214 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 7887776643221 1 12336899999999999988887763322 22234556788889999773
No 80
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.7e-06 Score=80.06 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=69.3
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHh
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEIL 275 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (1007)
+|++..+.++...+... ..+.+.|+|.+|+|||++|+++++.+...-. .+++....+...... ........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~~~~~~~~~----~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNASDLLEGLV----VAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC-CeEEEehhhhhhhhH----HHHHhhhh--
Confidence 47888899998887543 3468889999999999999999998753322 333332222111100 00000000
Q ss_pred cccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hh---hHHHhcCCCCC---CCCCeEEEEeCChh
Q 037332 276 DENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQ---LDYLAGGLDQF---GPGSKIIVTTRDKR 336 (1007)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gs~iliTtR~~~ 336 (1007)
............++.++|+||++.. +. +.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999854 22 22323332221 36778888887653
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=8.6e-06 Score=83.86 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
+....+.+||++|+||||||+.+...-+.+- ..|+......+...+ ++++.++- . -...
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~d-vR~ife~a----q--------------~~~~ 218 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTND-VRDIFEQA----Q--------------NEKS 218 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHH-HHHHHHHH----H--------------HHHh
Confidence 4677888999999999999999998655442 345542211122112 22222221 1 1123
Q ss_pred hCCCcEEEEEecCC--CchhhHHHhcCCCCCCCCCeEEE--EeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhc
Q 037332 294 LRQMDVFIVLDDVN--KVGQLDYLAGGLDQFGPGSKIIV--TTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAF 366 (1007)
Q Consensus 294 l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili--TtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~ 366 (1007)
+.++|.+|.+|.|. +..|-+.+++.. ..|.-++| ||.++...-. .....++-++.|..++...++.+..-
T Consensus 219 l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 45788999999994 555566666554 46776666 7777754221 22347899999999999998877432
Q ss_pred ---CCCC---CC-----hhHHHHHHHHHHHhCCCc
Q 037332 367 ---KGNH---GP-----EDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 367 ---~~~~---~~-----~~~~~~~~~i~~~~~g~P 390 (1007)
..+. +. .....+.+-++..|+|-.
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 11 123345566677777764
No 82
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-05 Score=87.24 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=117.8
Q ss_pred CCCCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCce-EEEEecchhhhccCcHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGK-CFVANVREESEKEGVLVR 265 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~ 265 (1007)
...++.+.+|+.+++++...|..- .....-+.|+|.+|.|||+.++.++++++...... +...++..... ..+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t----~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT----PYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC----HHH
Confidence 334566999999999999887531 22233488999999999999999999987664444 44445544443 445
Q ss_pred HHHHHHHHHhcccccc-cCcchHHHHHHHh--CCCcEEEEEecCCCchh-----hHHHhcCCCCCCCCCeEE--EEeCCh
Q 037332 266 LRERILSEILDENIKI-RTPNLSECIKKRL--RQMDVFIVLDDVNKVGQ-----LDYLAGGLDQFGPGSKII--VTTRDK 335 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~il--iTtR~~ 335 (1007)
+...++.++...+... ...+....+.+.+ .++.+++|||+++.... +-.|......+ .++|+ ..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 5556665554222211 1234455666666 35789999999965433 22333222222 45443 333333
Q ss_pred hhHhh--------cCcccEEEcCCCChhHHHHHHhhhh---cCCCCCChhHHHHHHHHHHHhCC-CchHHHHH
Q 037332 336 RVLDN--------FGVSNIYKVNGLENHEAFKLFCYYA---FKGNHGPEDLLVLSERVLYYANG-NPLALRVL 396 (1007)
Q Consensus 336 ~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~ 396 (1007)
.+... .+. ..+..++-+.+|-.+.+..++ |......+.--+++..++..-+| --.|+..+
T Consensus 167 ~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 167 KFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 33222 222 236788889999888888776 33333334444444455555554 33454443
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.3e-06 Score=95.80 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=109.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-c-Cc-eEEEEe-cch----------
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-F-EG-KCFVAN-VRE---------- 255 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~-~~~---------- 255 (1007)
...+.+||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... . .. -|..+. +..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 344679999999999999886532 24566899999999999999999976432 1 00 000000 000
Q ss_pred ---hhhccCcHHHHHHHHHHHHhcccccccCcchHHHHH-HHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEE
Q 037332 256 ---ESEKEGVLVRLRERILSEILDENIKIRTPNLSECIK-KRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKII 329 (1007)
Q Consensus 256 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il 329 (1007)
.....+ +.. .+++.. .+. .-..+++-++|||+++.. +..+.|+..+.......++|
T Consensus 92 EidAas~~k-VDd-IReLie----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 92 EVDAASRTK-VDD-TRELLD----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EeccccccC-HHH-HHHHHH----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 000000 111 111111 111 112356779999999755 45677776665445566666
Q ss_pred EEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 330 VTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 330 iTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
++|.+. .+... ......|++.+++.++..+.+.+.+-.. ......+.+..|++.++|.|-
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHH
Confidence 655544 33322 1223689999999999999988766322 122234567889999999884
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2e-05 Score=85.84 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=109.7
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc------ccCceEEEEecchhhhccCcHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR------EFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
+.++|-+..++.+..++..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. .. ..... +.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~-v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIG-VDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCC-HHHH
Confidence 46789999999999988643 23467789999999999999999987522 223222321 10 11111 2221
Q ss_pred HHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecC--CCchhhHHHhcCCCCCCCCCeEEEEeCChhhH-hh-cC
Q 037332 267 RERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDV--NKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVL-DN-FG 342 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~-~~-~~ 342 (1007)
+++...+...+ ..+++-++|+|++ .+.+.+..++..+....+++.+|++|.+.+.. .. ..
T Consensus 79 -r~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 -RNIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred -HHHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 22222211111 1234445666665 45566888888887667888998888766432 11 12
Q ss_pred cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 343 VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 343 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
....+++.+++.++....+.+.. .. ...+.+..++..++|.|..+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKY-ND-----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHh-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 23689999999999988776543 11 11234677889999998665433
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=6.2e-08 Score=110.13 Aligned_cols=222 Identities=25% Similarity=0.278 Sum_probs=148.0
Q ss_pred ccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceec
Q 037332 721 ISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMD 800 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 800 (1007)
...+++.|++.+|.|..+...+..+.+|++|++++|.+...- .+..++.|+.|++++|..... ..+..+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 445778888888888888777788888888888887655442 355667788888888755432 2344577888888
Q ss_pred cCcccccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCC--CCCEEEecCCCCC
Q 037332 801 LSWTKIKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLN--EVKSLSFAGCRNL 877 (1007)
Q Consensus 801 l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~--~L~~L~l~~~~~~ 877 (1007)
+++|.+..+... ...+.+|+.+.+.+|..... ..+..+..+..+++..|.++.+-. +..+. .|+.+++++|++.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccc
Confidence 888888876654 57778888888887765432 223333444445667776665422 12222 3788888888877
Q ss_pred cCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc---cc-hh-hhcCCCCCCEEeeecCCCCCcCC
Q 037332 878 VLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE---TL-PA-SMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 878 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~l-p~-~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
..+..+..+.++..|++.+|++..+. .+...+.+..+....|.+. .. .. .....+.++.+.+..|+.-...+
T Consensus 246 ~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 76566677788888888888777552 2445566666777777654 11 11 14667788888888887766554
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=2.4e-06 Score=80.11 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=69.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc----CceEEEEecchhhhccCcHHHHHHHHHHHHhccccc-ccCcchHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF----EGKCFVANVREESEKEGVLVRLRERILSEILDENIK-IRTPNLSECI 290 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~l 290 (1007)
.+.+.|+|.+|+|||++++.+++.....+ ...+++..+.. ... ...+...++.++...... ....++.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS---SRT-PRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH---HSS-HHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC---CCC-HHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 46899999999999999999999765431 33333333322 223 778888888887766554 2224455666
Q ss_pred HHHhCCCc-EEEEEecCCCc-h--hhHHHhcCCCCCCCCCeEEEEeCC
Q 037332 291 KKRLRQMD-VFIVLDDVNKV-G--QLDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 291 ~~~l~~kr-~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
.+.+...+ .+||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66665444 59999999766 3 2444543333 566777777665
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=1.4e-05 Score=82.62 Aligned_cols=148 Identities=15% Similarity=0.257 Sum_probs=86.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
...+.|+|..|+|||.||+++++.+..+-..++|+. ..++.... ..+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----------~~~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----------LAELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----------HHHHHhhh-----------------HHHHHhhh
Confidence 367889999999999999999987655433445554 11221110 11222222
Q ss_pred CCcEEEEEecCCCc---hhhHH-HhcCCCC-CCCCCeEEEEeCChhh---------HhhcCcccEEEcCCCChhHHHHHH
Q 037332 296 QMDVFIVLDDVNKV---GQLDY-LAGGLDQ-FGPGSKIIVTTRDKRV---------LDNFGVSNIYKVNGLENHEAFKLF 361 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iliTtR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf 361 (1007)
+-. ++|+||+... ..|+. +...+.. ...|.++|+|++...- ...+....+++++++++++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6789999633 23433 3322221 1356788998875321 111233467899999999999999
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 362 CYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
.+++.... -.-.+++..-+++.+.|..-++.
T Consensus 176 ~~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 176 QLRASRRG--LHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHH
Confidence 86664321 12224666777777777654443
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=4.6e-08 Score=102.38 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=119.1
Q ss_pred CCCCCCcEEecccccccCCCC--cccccCCCccEEEecCCCCCcccCCC---CCCCCCcEEeccccccCCccCCccCcce
Q 037332 652 SEIPNLEKINLWNCTNLAYIP--CNIQNFINLGVLCFRGCKSLKCFPHD---IHFTSPIKIDISYCVNLTEFPKISGNII 726 (1007)
Q Consensus 652 ~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 726 (1007)
..++|+++|.+.+|..++... ..-.++++|++|++..|..++...-. -.++.|+++++++|+.+..
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--------- 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--------- 231 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc---------
Confidence 445566666665555333211 11134556666666665544432111 1244455555555543332
Q ss_pred EEEeeCCccccccccccccccccEEecCCcccccc--chhhhhccCccceEEecCCCCCcccc--cccccCCCCceeccC
Q 037332 727 VLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKS--LSTSICKLRSLYWLYLNNCSKLESFP--EILEKMERLSYMDLS 802 (1007)
Q Consensus 727 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~ 802 (1007)
++++.+ ..++..++.+.+++|...+. +-..-+.+..+..+++..|..++... ..-..+..|+.|+.+
T Consensus 232 ------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 232 ------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred ------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 222211 23344455555555543321 11111233344455555554433221 111234455555555
Q ss_pred ccc-ccc--cchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCC--
Q 037332 803 WTK-IKE--LKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL-- 877 (1007)
Q Consensus 803 ~n~-l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-- 877 (1007)
+.. +.. +..-..+.++|+.|.+++|...+..- ++. .-.+.+.|+.+++..|...
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~------------------ft~---l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG------------------FTM---LGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchhhhhh------------------hhh---hhcCChhhhhhcccccceehh
Confidence 432 221 11122355666666666665433211 000 0123445555555555421
Q ss_pred -cCCcccCCCCCCCEEeccCCCCC-C-----CchhhCCCCCcCEEEccCCCCc--cchhhhcCCCCCCEEeeecCCCCC
Q 037332 878 -VLPTLLSGLCSLTELDLKDCGIR-E-----IPQDIGSVFALEKIDLSGNNFE--TLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 878 -~~~~~~~~l~~L~~L~L~~n~l~-~-----lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
.+-..-.+++.|+.|.|++|.+. + +...-..+..|+.|.|+++... ..-+.+..+++|+.+++.+|....
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 12222345667777777776432 1 1222345667778888877554 333456777788888888876544
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1.3e-05 Score=83.05 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=85.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+.+.|+|+.|+|||+||+++++.....-..+.|+. +... .... .+ +.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~----------------~~----~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFV----------------PE----VLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhh----------------HH----HHHHhh
Confidence 357899999999999999999997665433334443 2110 0000 00 111111
Q ss_pred CCcEEEEEecCCCc---hhhHHHh-cCCCC-CCCC-CeEEEEeCChh---------hHhhcCcccEEEcCCCChhHHHHH
Q 037332 296 QMDVFIVLDDVNKV---GQLDYLA-GGLDQ-FGPG-SKIIVTTRDKR---------VLDNFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~---~~~~~l~-~~~~~-~~~g-s~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L 360 (1007)
. --+++|||+... .+|+... ..+.. ...| .++|+||+... +...+....+++++++++++-.+.
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 1 137899999643 2333221 11111 1133 47999997552 222344457899999999999999
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 361 FCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 361 f~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
+.+++... .-.-.+++..-|++.+.|..-++.
T Consensus 176 l~~~a~~~--~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 176 LQLRARLR--GFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhhcCCHHHHH
Confidence 88766332 122334566777777776654433
No 90
>PF14516 AAA_35: AAA-like domain
Probab=98.28 E-value=0.00019 Score=78.48 Aligned_cols=206 Identities=12% Similarity=0.143 Sum_probs=118.7
Q ss_pred cCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh-ccCcHHHH
Q 037332 188 ISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE-KEGVLVRL 266 (1007)
Q Consensus 188 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l 266 (1007)
.+.+.+..|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+.. ...+...++..... ........
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHHH
Confidence 4556677889996666677666432 2589999999999999999999987654 22232334443221 12224444
Q ss_pred HHHHHHHHhcc----cc-----c---ccCcchHHHHHHHh---CCCcEEEEEecCCCchh----hHHHhcCCC-------
Q 037332 267 RERILSEILDE----NI-----K---IRTPNLSECIKKRL---RQMDVFIVLDDVNKVGQ----LDYLAGGLD------- 320 (1007)
Q Consensus 267 ~~~l~~~~~~~----~~-----~---~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~----~~~l~~~~~------- 320 (1007)
.+.+...+... .. . .........+.+.+ .+++.+|+||+|+..-. .+.+.+.+.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 44444333221 10 0 01122334454443 25899999999964432 122221110
Q ss_pred CCC-CCC--eEEEEeCChhhHh-h----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 321 QFG-PGS--KIIVTTRDKRVLD-N----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 321 ~~~-~gs--~iliTtR~~~v~~-~----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
... -.. -|++.+....... . .++...+++++++.+|..+|..++-.. .. ....++|...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~----~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS----QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC----HHHHHHHHHHHCCCHHH
Confidence 000 111 1222221111111 1 234568899999999999999876421 11 12278999999999999
Q ss_pred HHHHhhhhcCC
Q 037332 393 LRVLGSFLHQK 403 (1007)
Q Consensus 393 l~~~~~~l~~~ 403 (1007)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999998654
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.8e-08 Score=99.07 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=80.4
Q ss_pred cccCCCCceeccCccccc-ccchhhhcCCCCCEEeccCCCCCccCC--cccCCCCCCCEEEeccccCcc--cChhhhc-C
Q 037332 790 LEKMERLSYMDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLP--ENLGSLKSLVYIEAERSAISQ--VPASIAH-L 863 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~--~~~~~~~-l 863 (1007)
+..+.+|+.|.+.++.+. .+...+..-.+|+.|+|+.|+...... -.+.+++.|..|++++|.+.. +...+.+ -
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 344555555555555554 334445555666666666665443221 234566666666666665441 1111111 2
Q ss_pred CCCCEEEecCCCC----CcCCcccCCCCCCCEEeccCCC-CCC-CchhhCCCCCcCEEEccCCCCccchh---hhcCCCC
Q 037332 864 NEVKSLSFAGCRN----LVLPTLLSGLCSLTELDLKDCG-IRE-IPQDIGSVFALEKIDLSGNNFETLPA---SMKQLSR 934 (1007)
Q Consensus 864 ~~L~~L~l~~~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~---~~~~l~~ 934 (1007)
++|+.|+++||.. ..+......+|+|..|+|++|. ++. ....+..++.|++|.++.|..- +|. .+...|+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcc
Confidence 4666777777651 1222223456677777777663 332 3344556666777777666321 122 2455667
Q ss_pred CCEEeeecC
Q 037332 935 LRYLYLINC 943 (1007)
Q Consensus 935 L~~L~L~~n 943 (1007)
|.+|++.+|
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 777776666
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=7.4e-06 Score=97.38 Aligned_cols=169 Identities=19% Similarity=0.277 Sum_probs=98.4
Q ss_pred CCCCccchhhHHH---HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 191 DSDGLVGLNSRVE---QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 191 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
..+.++|.+..+. .+.+++.. +....+.++|++|+||||+|+.+++.....|. .+.. . ..+ +..+
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~-i~di- 93 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAG-VKDL- 93 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhh-hHHH-
Confidence 3456889888774 45555543 34556789999999999999999987665542 1110 0 001 1111
Q ss_pred HHHHHHHhcccccccCcchHHHHHHHh--CCCcEEEEEecCCC--chhhHHHhcCCCCCCCCCeEEEE--eCChh--hHh
Q 037332 268 ERILSEILDENIKIRTPNLSECIKKRL--RQMDVFIVLDDVNK--VGQLDYLAGGLDQFGPGSKIIVT--TRDKR--VLD 339 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliT--tR~~~--v~~ 339 (1007)
+.+. ....+.+ .+++.++|||||+. ..+.+.+...+. .|+.++|+ |.+.. +..
T Consensus 94 r~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 94 RAEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred HHHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111 1111111 24577999999964 345666665443 45555553 44432 111
Q ss_pred h-cCcccEEEcCCCChhHHHHHHhhhhcC-----CCCCChhHHHHHHHHHHHhCCCc
Q 037332 340 N-FGVSNIYKVNGLENHEAFKLFCYYAFK-----GNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 340 ~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
. .....++++++++.++...++.+.+-. +.....-.++....|++.+.|..
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1 112357999999999999998876531 01112233456677888888865
No 93
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.6e-06 Score=103.17 Aligned_cols=90 Identities=27% Similarity=0.312 Sum_probs=45.7
Q ss_pred ccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc-ccchhhhcCCCCCEEeccC
Q 037332 748 LVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHLERLRNLKLRE 826 (1007)
Q Consensus 748 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~ 826 (1007)
++.|+|++|.....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444455555444445555555555555555555544455555555555555555555554 3444455555555555555
Q ss_pred CCCCccCCccc
Q 037332 827 CSKLVSLPENL 837 (1007)
Q Consensus 827 ~~~~~~~~~~l 837 (1007)
|...+.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 54444444443
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=4.8e-05 Score=84.75 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=106.7
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
...+.+||-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+........ ..+..+.. -..+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTS----CLEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcH----HHHHHcc
Confidence 344679999999999999886543 2356889999999999999999987643211000 00000000 0000000
Q ss_pred HHHHHhccc--ccccCcc---hHHHHHH-HhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCC-hhhHhh
Q 037332 270 ILSEILDEN--IKIRTPN---LSECIKK-RLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRD-KRVLDN 340 (1007)
Q Consensus 270 l~~~~~~~~--~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~ 340 (1007)
....+..-. .....++ +.+.+.. -..++.-++|+|+++.. +.++.++..+........+|.+|.+ ..+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 000000000 0000011 1111111 12356679999999755 4477777666543445555544443 333222
Q ss_pred c-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 341 F-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 341 ~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
. .....|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChH
Confidence 1 2235799999999999888887763322 2223456788999999988
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=90.65 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=108.2
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----c-----CceEEEEecchhhhc
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----F-----EGKCFVANVREESEK 259 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-----~~~~~~~~~~~~~~~ 259 (1007)
...+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.+-.. . .|... ..++.....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C-~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC-RACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc-HHHHHHHcC
Confidence 344679999999999999986542 24567899999999999999999875321 0 00000 000000000
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHH----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeC
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKR----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTR 333 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR 333 (1007)
. ..++. .+.... ....++..+.+... ..++.-++|||+++.. ..+..|+..+.....+.++|++|.
T Consensus 91 ~--hpDvi-----EIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 91 R--FVDYI-----EMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred C--CCcce-----Eecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 0 00000 000000 00001111111111 1345668999999755 347777776655445666555554
Q ss_pred -ChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 334 -DKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 334 -~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
...+.... .....++++.++.++..+.+.+.+-.... ....+....|++.++|.|...
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 44443321 12368999999999999988876632221 122345578899999988543
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.3e-05 Score=86.76 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=105.3
Q ss_pred CCccchhhHHHHHHHHhccCCC--------CeEEEEEEecCCCcHHHHHHHHHHhhhccc--------------------
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLP--------VFRIVGIWGMGGIGKTTIAGAIFNQNFREF-------------------- 244 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 244 (1007)
+.++|-+..++.|.+++..+.. -.+.+.++|++|+|||++|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999998865421 346788999999999999999988653221
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCC
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQF 322 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~ 322 (1007)
+...++... ..... +.++ +.+...+... -..+++-++|+|+++... ....++..+...
T Consensus 85 pD~~~i~~~---~~~i~-i~~i-R~l~~~~~~~---------------p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPE---GLSIG-VDEV-RELVTIAARR---------------PSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEeccc---cccCC-HHHH-HHHHHHHHhC---------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111122100 00000 1111 1111111100 012445588889997553 345566555544
Q ss_pred CCCCeEEEEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 323 GPGSKIIVTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 323 ~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
.++..+|++|.+. .+... ......+.+.+++.++..+.+.+.. .. ..+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 5567677766664 33322 1223689999999999998886432 11 1345678899999999754433
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=3.8e-05 Score=86.00 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=109.7
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc----cC-----------------ceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE----FE-----------------GKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 248 (1007)
...+.++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999886442 34578899999999999999999875321 11 011
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 326 (1007)
++... .... .. -.+++...+... -..+++-++|+|+++.. .....+...+....+.+
T Consensus 90 ~~~~~----~~~~-~~-~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDAA----SNNG-VD-DIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeecc----ccCC-HH-HHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11100 0000 10 011111111100 01234558899998755 44666666665445567
Q ss_pred eEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 327 KIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 327 ~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
.+|++|.+.. +... ......+++.+++.++..+.+..++-.... ....+.+..+++.++|.|..+...
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHH
Confidence 7777775554 2222 122357899999999998888876633221 122456788899999988655443
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.8e-05 Score=88.27 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=106.2
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc----cC-----------------ce
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE----FE-----------------GK 247 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 247 (1007)
|...+.+||.+..++.+...+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3345679999988888888775432 23567899999999999999999865321 10 01
Q ss_pred EEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCC
Q 037332 248 CFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPG 325 (1007)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 325 (1007)
..+. . +...+ +..+ +++...... .-..+++-++|+|+++.. ++.+.++..+......
T Consensus 89 ~el~-a---a~~~g-id~i-R~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELD-A---ASNRG-IDEI-RKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEe-C---cccCC-HHHH-HHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 1110 0 00011 1111 111111000 012345679999999754 3456666665543344
Q ss_pred CeEEEEeCC-hhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 037332 326 SKIIVTTRD-KRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN-PLALRVLGS 398 (1007)
Q Consensus 326 s~iliTtR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 398 (1007)
..+|++|.+ ..+.... .....+++.+++.++....+.+.+..... .-..+....|++.++|. +.|+..+..
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 454445444 3332221 22368899999999998888877633221 22245567788877654 566666544
No 99
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=2.6e-05 Score=88.45 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=97.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc-Cce-EEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGK-CFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
...+.|+|..|+|||+|++++++.+.... ... +++. ...+...+...+... .+....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~------~~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKT------HKEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHh------hhHHHHHHHH
Confidence 35688999999999999999999765432 222 3332 233444444333221 0122334444
Q ss_pred hCCCcEEEEEecCCCch---h-hHHHhcCCCC-CCCCCeEEEEeCCh-h--------hHhhcCcccEEEcCCCChhHHHH
Q 037332 294 LRQMDVFIVLDDVNKVG---Q-LDYLAGGLDQ-FGPGSKIIVTTRDK-R--------VLDNFGVSNIYKVNGLENHEAFK 359 (1007)
Q Consensus 294 l~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iliTtR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~ 359 (1007)
++ +.-+|||||+.... . .+.+...+.. ...|..||+|+... . +...+...-++++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 43 33478899996442 2 2333322211 13455788886543 1 22223344578999999999999
Q ss_pred HHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 360 LFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 360 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
++.+++-.......-.+++..-|++.++|.|-.+..+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988743221112346778889999999986655443
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.6e-05 Score=90.96 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=107.5
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc---------------------cCceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE---------------------FEGKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 248 (1007)
...+.+||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 344679999999999999886532 34567899999999999999999865321 11111
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH-HhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK-RLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPG 325 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 325 (1007)
.+. . ....+ +.++ +.+ .+.+.. -..+++-++|+|+++.. +..+.++..+......
T Consensus 92 eid-a---as~~g-vd~i-r~i----------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 92 EID-A---ASRTG-VEET-KEI----------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred Eee-c---ccccC-HHHH-HHH----------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 110 0 00011 1111 111 111111 12356679999999754 3466777666554456
Q ss_pred CeEEEEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 037332 326 SKIIVTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRVL 396 (1007)
Q Consensus 326 s~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 396 (1007)
+.+|++|.+. .+... ......+++.+++.++..+.+.+.+-... ..........|++.++|.+ -|+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666555443 33322 22246899999999998888776552221 1223445677888888866 344443
No 101
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=3.4e-07 Score=104.06 Aligned_cols=212 Identities=25% Similarity=0.278 Sum_probs=116.1
Q ss_pred EEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccc
Q 037332 727 VLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKI 806 (1007)
Q Consensus 727 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 806 (1007)
.++++.|.+..+-..+..+.+|+.|++.+|..... ...+..+++|++|++++|.+... ..+..++.|+.|++++|.+
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcc
Confidence 33344455555444456666777777776544332 22255566777777777554433 2244555677777777777
Q ss_pred cccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCC
Q 037332 807 KELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSG 885 (1007)
Q Consensus 807 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 885 (1007)
..+. .+..+++|+.+++++|.....-+ . ...+.+|+.+++.+|.+..+.. +..+..+..+++..|.+..+-. +..
T Consensus 153 ~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~~-l~~ 228 (414)
T KOG0531|consen 153 SDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLEG-LNE 228 (414)
T ss_pred hhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceeccC-ccc
Confidence 6553 23346677777777766544332 1 4556666666777776664431 2223333333555554433322 112
Q ss_pred CCC--CCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 886 LCS--LTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 886 l~~--L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
+.. |+.+++++|.+..++..+..+..+..|++.+|.+..+. .+...+.+..+....+++.
T Consensus 229 ~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred chhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence 222 66777777777666556666667777777776665443 2344455555555555543
No 102
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.3e-06 Score=68.96 Aligned_cols=59 Identities=29% Similarity=0.453 Sum_probs=39.5
Q ss_pred CCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCC
Q 037332 864 NEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 864 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l 922 (1007)
++|++|++++|.+..+|. .|.++++|++|++++|.++.++. .+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666555553 56677777777777777777643 567777777777777754
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=7.1e-05 Score=80.46 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc--eEEEEecchhhhccCcHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG--KCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 265 (1007)
..+..++||+.++..+.+++... ....+-+-|.|.+|.|||.+...++.+....... .+++.+. .... ...
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~-sl~~----~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT-SLTE----ASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec-cccc----hHH
Confidence 34678999999999999998642 3456788999999999999999999987654433 2444322 1111 445
Q ss_pred HHHHHHHHHhccccc-ccCcchHHHHHHHhCCC--cEEEEEecCCCchh--hHHHhcCCCCC-CCCCeEEEEeCCh----
Q 037332 266 LRERILSEILDENIK-IRTPNLSECIKKRLRQM--DVFIVLDDVNKVGQ--LDYLAGGLDQF-GPGSKIIVTTRDK---- 335 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~-~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~iliTtR~~---- 335 (1007)
+...++..+...... ....+....+.....+. -+|+|+|..+.... -+.+...+.|. -+++|+|+.--..
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 555555555222111 11123445555555443 58999999865432 12222333222 2566665432111
Q ss_pred --hhHhhc----C-cccEEEcCCCChhHHHHHHhhhhcCCCCC---ChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 336 --RVLDNF----G-VSNIYKVNGLENHEAFKLFCYYAFKGNHG---PEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 336 --~v~~~~----~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
..+... + ....+..++.+.++-.+++..+.-..... +...+-.|++++.-.|.+--|+.+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111111 1 23577889999999999999887332211 12233344444444455555555444
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1e-07 Score=95.17 Aligned_cols=177 Identities=21% Similarity=0.253 Sum_probs=101.9
Q ss_pred cceEEEeeCCccc--cccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccc--ccccCCCCcee
Q 037332 724 NIIVLDLRDSAIE--EVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPE--ILEKMERLSYM 799 (1007)
Q Consensus 724 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L 799 (1007)
.+++|||+...|+ .+-..+..+.+|+.|.|.++.....+...+.+-.+|+.|+++.|+..+...- .+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777776 3445567788888888888777777777788888888888888876654322 34667777777
Q ss_pred ccCcccccc--cchhhhc-CCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCC
Q 037332 800 DLSWTKIKE--LKSSIDH-LERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 800 ~l~~n~l~~--l~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
+|+++.+.. +.-.+.+ -++|+.|+|+||...-. ...+......+++|..|+|++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--------------------~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--------------------KSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--------------------hhHHHHHHHhCCceeeeccccccc
Confidence 777765541 1111111 24566666666542110 001111123455555555555542
Q ss_pred Cc--CCcccCCCCCCCEEeccCCCCC--CCchhhCCCCCcCEEEccCC
Q 037332 877 LV--LPTLLSGLCSLTELDLKDCGIR--EIPQDIGSVFALEKIDLSGN 920 (1007)
Q Consensus 877 ~~--~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n 920 (1007)
.. .-..+..++.|++|.++.|... +..-.+...|+|.+|++.+|
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 11 1123445666666666666422 11123456677777777665
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=1.2e-05 Score=89.82 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=98.1
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
.+.+.|+++.++++.+.+.. +-...+.|.++|++|+|||++|++++++....|- ....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~~------- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVVG------- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----Eeeh-------
Confidence 35688999999999887632 1133567899999999999999999997653321 1111
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchH-HHHHHHhCCCcEEEEEecCCCch-------------h---hHHHhcCCCCC-
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLS-ECIKKRLRQMDVFIVLDDVNKVG-------------Q---LDYLAGGLDQF- 322 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~-------------~---~~~l~~~~~~~- 322 (1007)
..+.... .+.. .... ..+...-...+.+|+|||++... . +..+...+...
T Consensus 199 ---~~l~~~~----~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---SELVQKF----IGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---HHHhHhh----ccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111110 0000 1111 11222223457899999997541 1 12222222211
Q ss_pred -CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 037332 323 -GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGP-EDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 -~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~P 390 (1007)
..+.+||.||........ ...+..++++..+.++..++|..+..+..... .. ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 235567777765433221 12456899999999999999998774433222 22 245566666653
No 106
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.3e-06 Score=87.45 Aligned_cols=180 Identities=17% Similarity=0.103 Sum_probs=101.6
Q ss_pred ccccccEEecCCccccc--cchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc--ccchhhhcCCCC
Q 037332 744 SLTTLVKLDLSYCTRLK--SLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK--ELKSSIDHLERL 819 (1007)
Q Consensus 744 ~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L 819 (1007)
..+.++.|||.+|.... ++...+.+||.|+.|++++|+....+...-..+.+|++|-|.++.+. .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46778888888875432 34444667888899998887665433222245678888888887765 556677788888
Q ss_pred CEEeccCCCCCcc-CC-cccC-CCCCCCEEEeccccCc---ccChhhhcCCCCCEEEecCCCCCcCC--cccCCCCCCCE
Q 037332 820 RNLKLRECSKLVS-LP-ENLG-SLKSLVYIEAERSAIS---QVPASIAHLNEVKSLSFAGCRNLVLP--TLLSGLCSLTE 891 (1007)
Q Consensus 820 ~~L~l~~~~~~~~-~~-~~l~-~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~ 891 (1007)
+.|.++.|+.-.. +. .... .-+.+++|+...|... .+-..-..++++..+.+..|++.... ..+..+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888887742111 00 0111 1123344444333222 11111123456666666666543322 23445556666
Q ss_pred EeccCCCCCCC--chhhCCCCCcCEEEccCCCCc
Q 037332 892 LDLKDCGIREI--PQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 892 L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~l~ 923 (1007)
|+|+.++|.++ -+.+..+++|..|.+++|.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666666654 234556666666666666544
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.9e-05 Score=84.78 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=113.2
Q ss_pred ccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc----cCceEEEEecchhhhccCc
Q 037332 187 TISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE----FEGKCFVANVREESEKEGV 262 (1007)
Q Consensus 187 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~ 262 (1007)
..|...+.++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+++.+-.. +....... ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~----~~~~--- 88 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD----PDPA--- 88 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC----CCCC---
Confidence 345566789999999999999886543 34578899999999999999999976432 11110000 0000
Q ss_pred HHHHHHHHHHH-------Hhc---ccc----cccCcchHHHHHHHh-----CCCcEEEEEecCCCchh--hHHHhcCCCC
Q 037332 263 LVRLRERILSE-------ILD---ENI----KIRTPNLSECIKKRL-----RQMDVFIVLDDVNKVGQ--LDYLAGGLDQ 321 (1007)
Q Consensus 263 ~~~l~~~l~~~-------~~~---~~~----~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~ 321 (1007)
....+.+... +.. ... ....-+.+..+.+.+ .+++-++|+|+++.... .+.++..+..
T Consensus 89 -c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 89 -SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred -CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 0011111110 000 000 000011223333333 34667899999975543 5555555443
Q ss_pred CCCCCeEEEEe-CChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 322 FGPGSKIIVTT-RDKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 322 ~~~gs~iliTt-R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
...+..+|++| +...+.... .....+++.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33455555444 433333221 123689999999999999998743211 1 123456789999999997655443
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=4.7e-08 Score=108.67 Aligned_cols=195 Identities=22% Similarity=0.254 Sum_probs=114.0
Q ss_pred cccccEEecCCccccccc-hhhhhccCccceEEecCCCCCcccccccccC-CCCceeccCcccccccchhhhc-------
Q 037332 745 LTTLVKLDLSYCTRLKSL-STSICKLRSLYWLYLNNCSKLESFPEILEKM-ERLSYMDLSWTKIKELKSSIDH------- 815 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~l~~~~~~------- 815 (1007)
+++++.|.+-.-..-.-. |-.+..+.+|+.|.+.+|+... ...+..+ ..|++|.. .|.++.+...+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 444455544432222222 5567778899999999987654 1111111 23444422 2222222111111
Q ss_pred ---CCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCccc-CCCCCCCE
Q 037332 816 ---LERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLL-SGLCSLTE 891 (1007)
Q Consensus 816 ---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~ 891 (1007)
...|...+.+.| .+..+...+.-++.|+.|+|++|+++.+. .+..++.|+.|+|++|....+|..- .++ .|+.
T Consensus 160 s~~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQL 236 (1096)
T ss_pred chhhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hhee
Confidence 112333344433 33445556666777788888888877665 5677788888888888776666532 233 3888
Q ss_pred EeccCCCCCCCchhhCCCCCcCEEEccCCCCccch--hhhcCCCCCCEEeeecCCCC
Q 037332 892 LDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP--ASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 892 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~L~~n~~l 946 (1007)
|+|++|.++++ .++.++.+|+.||+++|-+.... .-+..+..|+.|+|.+||+-
T Consensus 237 L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888877766 35677888888888888665221 23456677888888888763
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=4.1e-05 Score=87.22 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC--c-----eEEEEe-cchhhh--c
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE--G-----KCFVAN-VREESE--K 259 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-----~~~~~~-~~~~~~--~ 259 (1007)
....++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+-.... . .|..+. +..... .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 344678999999999888775432 2467889999999999999999987532110 0 011000 000000 0
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHH----HhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEE-Ee
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKK----RLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIV-TT 332 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-Tt 332 (1007)
.+ +. ++... .....+++...+.. -..+++-++|+|+++.. ..++.++..+....+.+.+|+ ||
T Consensus 97 ~D-v~--------eidaa-s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 97 PD-II--------EIDAA-SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred Cc-EE--------Eeecc-CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00 00 00000 00000111111111 12356678999999865 347777766654455666554 54
Q ss_pred CChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 333 RDKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 333 R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
+...+.... .....+++.+++.++..+.+.+.+-.... ....+....|++.++|.+-
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 544443322 22357999999999999999888743221 2223456778889999773
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.4e-05 Score=89.29 Aligned_cols=192 Identities=17% Similarity=0.136 Sum_probs=105.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCce---EEEE-ecchhhhccCcHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGK---CFVA-NVREESEKEGVLVR 265 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~-~~~~~~~~~~~~~~ 265 (1007)
...+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..-... |-.+ .++...... ..+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~--~~D 89 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR--YVD 89 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC--ccc
Confidence 345689999999999999986542 246788999999999999999988653211000 0000 000000000 000
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHH----HhCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCChh-hH
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKK----RLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRDKR-VL 338 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~~~-v~ 338 (1007)
+. .+... .....+++.+.+.. -..+++-++|||+++.... ...++..+......+++|++|.+.. +.
T Consensus 90 vl-----EidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 90 LL-----EIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred eE-----EEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000 00000111111111 0124567899999976543 4455555443345567777665443 22
Q ss_pred hh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 339 DN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
.. .+....+++..++.++..+.+.+.+-... .....+.+..|++.++|.+.-
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHH
Confidence 11 12224678889999999988887663322 122345678889999998743
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.3e-05 Score=88.53 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=105.8
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
|...+.++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...-.... ..+..+ ...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~~Cg~C--------~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--DCCNSC--------SVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCccc--------HHHH
Confidence 3445689999999999999886542 2467889999999999999999987632100000 000000 0000
Q ss_pred HHHHH-------HhcccccccCcchHHHHH---H-HhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 269 RILSE-------ILDENIKIRTPNLSECIK---K-RLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 269 ~l~~~-------~~~~~~~~~~~~~~~~l~---~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
.+... +.... ....++....+. . -..+++-++|+|+++.. +.+..++..+......+.+|++|...
T Consensus 81 ~i~~~~h~DiieIdaas-~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 81 SINTNQSVDIVELDAAS-NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHcCCCCceEEecccc-ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 00000 00000 000001111110 0 01123446999999754 44666666554334455565555433
Q ss_pred -hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 037332 336 -RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVLG 397 (1007)
Q Consensus 336 -~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 397 (1007)
.+... ......+++.+++.++....+...+-.... ....+.+..+++.++|.+- |+..+-
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322 222368899999999998888776532221 1223456788888998663 444433
No 112
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.3e-06 Score=87.52 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=102.8
Q ss_pred cCccceEEecCCCCCc--ccccccccCCCCceeccCcccccccchhh-hcCCCCCEEeccCCCCCc-cCCcccCCCCCCC
Q 037332 769 LRSLYWLYLNNCSKLE--SFPEILEKMERLSYMDLSWTKIKELKSSI-DHLERLRNLKLRECSKLV-SLPENLGSLKSLV 844 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 844 (1007)
.+.++.|++.+|.+.. .+...+.++|.|++|+|+.|++...-..+ ..+.+|+.|.+.+....- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555544332 22233445555555555555544222222 233445555544432211 1222334444445
Q ss_pred EEEeccccCcccC---hhhh-cCCCCCEEEecCCCCCcCC---cccCCCCCCCEEeccCCCCCCC--chhhCCCCCcCEE
Q 037332 845 YIEAERSAISQVP---ASIA-HLNEVKSLSFAGCRNLVLP---TLLSGLCSLTELDLKDCGIREI--PQDIGSVFALEKI 915 (1007)
Q Consensus 845 ~L~l~~~~l~~~~---~~~~-~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L 915 (1007)
.|+++.|.+..+- .... ..+.+++|++..|....+. ..-.-+|++..+-+..|.+.+. ......++.+--|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 5555544332110 0000 1123334444333311111 1123467888888888877754 3345667888899
Q ss_pred EccCCCCccch--hhhcCCCCCCEEeeecCCCCCcCCC------Cccccccccccccc
Q 037332 916 DLSGNNFETLP--ASMKQLSRLRYLYLINCYMLQTLPE------LPLRLKLLEARNCK 965 (1007)
Q Consensus 916 ~L~~n~l~~lp--~~~~~l~~L~~L~L~~n~~l~~~p~------~~~~L~~L~~~~c~ 965 (1007)
+|+.|++.+.. +.+..++.|..|.++++|+...+.. +...|..+.+.|=+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 99999998654 4578899999999999999887763 23445555554443
No 113
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.2e-05 Score=87.27 Aligned_cols=28 Identities=11% Similarity=0.433 Sum_probs=12.7
Q ss_pred CCcEEeccccccCCccCCccCcceEEEee
Q 037332 703 SPIKIDISYCVNLTEFPKISGNIIVLDLR 731 (1007)
Q Consensus 703 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 731 (1007)
.+..|++++| .++.+|..+.+|+.|.++
T Consensus 53 ~l~~L~Is~c-~L~sLP~LP~sLtsL~Ls 80 (426)
T PRK15386 53 ASGRLYIKDC-DIESLPVLPNELTEITIE 80 (426)
T ss_pred CCCEEEeCCC-CCcccCCCCCCCcEEEcc
Confidence 3444555544 444444444444444444
No 114
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.10 E-value=1.7e-07 Score=98.19 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=51.6
Q ss_pred cCCCCCEEeccCCCCCc--cCCcccCCCCCCCEEEeccccCc-c-----cChhhhcCCCCCEEEecCCCCC--cCCcccC
Q 037332 815 HLERLRNLKLRECSKLV--SLPENLGSLKSLVYIEAERSAIS-Q-----VPASIAHLNEVKSLSFAGCRNL--VLPTLLS 884 (1007)
Q Consensus 815 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~-~-----~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~ 884 (1007)
+.+.|+.+++.+|.... .+-..-.+++.|+.|.+++|... + +...-..+..|..+.+++|+.. .....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 34445555554443322 12222234455555555544322 1 1122234566777777777632 1223455
Q ss_pred CCCCCCEEeccCCCCC---CCchhhCCCCCcCEEEc
Q 037332 885 GLCSLTELDLKDCGIR---EIPQDIGSVFALEKIDL 917 (1007)
Q Consensus 885 ~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L 917 (1007)
.+++|+.+++-+|+-. .+...-.++|++++..+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6677888887777433 13334456777766554
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.3e-05 Score=84.41 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=107.4
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc---------------------cCceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE---------------------FEGKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 248 (1007)
...+++||-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.++..+-.. +...+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345679999999999988886542 24578899999999999999998754211 11112
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 326 (1007)
.+.. +...+ +.++ +.+....... -..+++-++|+|+++... ..+.++..+....+.+
T Consensus 89 eida----as~~~-vddI-R~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 89 EIDA----ASNTS-VDDI-KVILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEec----ccCCC-HHHH-HHHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2211 01111 2221 1111111000 012455689999997553 3666766665555667
Q ss_pred eEEEEeCC-hhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 327 KIIVTTRD-KRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 327 ~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
++|++|.+ ..+... ......+++.+++.++..+.+.+.+-.... .-..+.+..|++.++|.+-
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 66666543 343332 223468899999999999988877643222 2234556788889988774
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=9.3e-05 Score=83.19 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=107.7
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--cCceEEEEecchhhhccCcHHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
|...+.++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... +....|..........- ..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c----~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC----ES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC----HH
Confidence 3345689999999999998886542 24568899999999999999999876331 11000100000000000 00
Q ss_pred HHHHHHH-------HhcccccccCcchHHHHHHHh-----CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEe
Q 037332 267 RERILSE-------ILDENIKIRTPNLSECIKKRL-----RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTT 332 (1007)
Q Consensus 267 ~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt 332 (1007)
-+.+... +.+.. ....+++. .+.+.+ .+++-++|+|+++... .++.+...+....+.+.+|++|
T Consensus 87 c~~~~~~~~~n~~~~~~~~-~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAAS-NNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHhcCCCCCeEeecccc-cCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000000 00000 00001111 111222 2455688999997553 5677776666555666766555
Q ss_pred -CChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 333 -RDKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 333 -R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
+...+.... ....++++.++++++..+.+...+-.. ...-..+.+..+++.++|.+--
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHH
Confidence 433333221 123578999999999888887665221 1223346678899999998743
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=3.8e-05 Score=81.25 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=80.1
Q ss_pred CccchhhHHHHHHHHhcc-------------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc--CceEEEEecchhhh
Q 037332 194 GLVGLNSRVEQIKSLLCI-------------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF--EGKCFVANVREESE 258 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~ 258 (1007)
.++|.+..+++|.+.... ..+....+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 478887777666543210 113456688999999999999999998653211 1112221 110
Q ss_pred ccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc----------hhhHHHhcCCCCCCCCCeE
Q 037332 259 KEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV----------GQLDYLAGGLDQFGPGSKI 328 (1007)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~i 328 (1007)
.++... ..+.. .......+... ..-+|++|+++.. +..+.+............+
T Consensus 83 -----~~l~~~----~~g~~----~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 -----ADLVGE----YIGHT----AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred -----HHhhhh----hccch----HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 111111 00000 01111222221 2348899999752 2345565554433333345
Q ss_pred EEEeCChhhHh------h--cCcccEEEcCCCChhHHHHHHhhhhc
Q 037332 329 IVTTRDKRVLD------N--FGVSNIYKVNGLENHEAFKLFCYYAF 366 (1007)
Q Consensus 329 liTtR~~~v~~------~--~~~~~~~~l~~L~~~~a~~Lf~~~a~ 366 (1007)
|+++...+... . -.....++++.++.++-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 55554332211 0 11234688999999999999887763
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=0.00012 Score=73.44 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-hhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 296 QMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK-RVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
+.+-++|+||++... ..+.++..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999997553 3666766665555667777777654 222211 12368999999999999888776 1
Q ss_pred ChhHHHHHHHHHHHhCCCchH
Q 037332 372 PEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLa 392 (1007)
...+.+..+++.++|.|..
T Consensus 169 --i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred --CCHHHHHHHHHHcCCCccc
Confidence 1135678999999998853
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=8.8e-05 Score=84.16 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=90.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
..-+.|+|.+|+|||+||+++++.+...+ ...+.+.. ..++...+...+... ....+++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~--------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc--------cHHHHHHHH
Confidence 44689999999999999999999876654 33333322 222333333333211 112233344
Q ss_pred CCCcEEEEEecCCCch---hh-HHHhcCCCC-CCCCCeEEEEeC-ChhhHh--------hcCcccEEEcCCCChhHHHHH
Q 037332 295 RQMDVFIVLDDVNKVG---QL-DYLAGGLDQ-FGPGSKIIVTTR-DKRVLD--------NFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iliTtR-~~~v~~--------~~~~~~~~~l~~L~~~~a~~L 360 (1007)
+.+.-+|++||++... .+ +.+...+.. ...|..||+||. .+.-.. .+...-++++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345589999997431 11 222222111 123557888874 433221 123345789999999999999
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 361 FCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 361 f~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
+.+.+-... ..-.++++..|++.+.|.--
T Consensus 272 L~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 272 ARKMLEIEH--GELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHhccccCHH
Confidence 988874321 12234567777777777543
No 120
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00016 Score=83.18 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc---------------------cCceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE---------------------FEGKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 248 (1007)
...+.+||-+..++.|.+++..+. -.+...++|+.|+||||+|+.+++.+-.. |....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345679999999999999986542 24567899999999999999999865321 11111
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 326 (1007)
.+.. ....+ +.++ +.+...+.-. -..++.-++|+|+|+.. +....++..+....+.+
T Consensus 92 eida----as~~~-v~~i-R~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 92 EVDA----ASRTK-VEDT-RELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEcc----cccCC-HHHH-HHHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 1110 00111 2111 1111111100 01245568999999754 44666666665445567
Q ss_pred eEEEEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 327 KIIVTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 327 ~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
++|++|.+. .+... ......+++++++.++..+.+.+.+-.... ....+....|++.++|.+--
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRD 216 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHH
Confidence 777665544 22222 112357899999999887776655522221 11234567788888887743
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.04 E-value=8.4e-05 Score=84.28 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=88.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
...+.|+|..|+|||+||+++++.+..+.. ..+.+.. ...+...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 456889999999999999999998766542 2333322 222233333333221 122333334
Q ss_pred CCCcEEEEEecCCCchh----hHHHhcCCCC-CCCCCeEEEEeCCh-hhH--------hhcCcccEEEcCCCChhHHHHH
Q 037332 295 RQMDVFIVLDDVNKVGQ----LDYLAGGLDQ-FGPGSKIIVTTRDK-RVL--------DNFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iliTtR~~-~v~--------~~~~~~~~~~l~~L~~~~a~~L 360 (1007)
++ .-+|||||++.... .+.+...+.. ...|..+|+|+... ... ..+....++++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 23788999964321 1223222211 12455678877542 211 1122234789999999999999
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 361 FCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 361 f~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
+.+.+-.. .....+++...|++.+.|..-.
T Consensus 277 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 277 LQKKAEEE--GLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhcCCCHHH
Confidence 98887432 2222345667777777776543
No 122
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=8e-05 Score=86.78 Aligned_cols=189 Identities=15% Similarity=0.099 Sum_probs=106.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
...+.+||-+.-++.|.+.+..+. -.+.+.++|..|+||||+|+.+++.+-...... ...++.+ ...+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~--~~pCg~C--------~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT--ATPCGEC--------DNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC--CCCCCCC--------HHHHH
Confidence 445689999999999999886542 235578999999999999999998753321000 0000000 00000
Q ss_pred HHH-------HHhcccccccCcchHH---HHHH-HhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-
Q 037332 270 ILS-------EILDENIKIRTPNLSE---CIKK-RLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK- 335 (1007)
Q Consensus 270 l~~-------~~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~- 335 (1007)
+.. .+.... ....++..+ .+.. -..+++-++|||+++... ..+.|+..+.......++|.+|.+.
T Consensus 82 i~~g~~~D~ieidaas-~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 82 IEQGRFVDLIEIDAAS-RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHcCCCCCceeecccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 000 000000 000011111 1111 124566799999997543 4666665554444555565555444
Q ss_pred hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 336 RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 336 ~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
.+... ......|++.+++.++..+.+.+.+-... .....+....|++.++|.+-.
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRD 216 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 33322 22246899999999999998887652221 112234567888999998743
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.3e-05 Score=83.73 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=105.1
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--------cCceEEEEecchhhhcc
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--------FEGKCFVANVREESEKE 260 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 260 (1007)
|..-+.++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.+... |...++-.+ . ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccCC
Confidence 334567899999999999988653 234688899999999999999998876431 222222111 0 0001
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCC-hhh
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRD-KRV 337 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v 337 (1007)
+ +..+ +.+..++... -..+++-++|+|+++... .++.+...+......+.+|++|.. ..+
T Consensus 89 ~-~~~i-~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 S-VDDI-RNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred C-HHHH-HHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 1 1111 1111111000 012345579999987543 366665544433345556655533 222
Q ss_pred Hhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 338 LDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
... ......++.+++++++....+...+..... .-..+.+..+++.++|.+-
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHH
Confidence 221 122357899999999998888876643222 1224567788888888764
No 124
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=4.5e-05 Score=90.06 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--cc---CceEEEE-ecchhhhccCc
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--EF---EGKCFVA-NVREESEKEGV 262 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~-~~~~~~~~~~~ 262 (1007)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+. +.... ..+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~d- 224 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RWD- 224 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cCC-
Confidence 33446799999999998887743 23457999999999999999999876532 11 1122332 11110 001
Q ss_pred HHHHHHHH---------------HHHHhcc------------------cccccCcchHHHHHHHhCCCcEEEEEecCCCc
Q 037332 263 LVRLRERI---------------LSEILDE------------------NIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV 309 (1007)
Q Consensus 263 ~~~l~~~l---------------~~~~~~~------------------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 309 (1007)
...+...+ +...+.. ....-....+..+.+.++++++.++-|+.|..
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 11111000 1100000 00000123567777888888888887766544
Q ss_pred h--hhHHHhcCCCCCCCCCeEEE--EeCChhhHhh-c-CcccEEEcCCCChhHHHHHHhhhh
Q 037332 310 G--QLDYLAGGLDQFGPGSKIIV--TTRDKRVLDN-F-GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 310 ~--~~~~l~~~~~~~~~gs~ili--TtR~~~v~~~-~-~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
+ .|+.+...+....+...|+| ||++...... . .....+.+.+++.+|.++++.+.+
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 3 36666655554445545555 5665432111 1 112467889999999999998876
No 125
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00012 Score=85.12 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=105.4
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--c-CceEEEEecchhhhccCcHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--F-EGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f-~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
...+++||-+.-++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+-.. . ....-...++.+ ..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C--------~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC--------QA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc--------HH
Confidence 345679999998899999886542 34677899999999999999998865311 0 000000000000 00
Q ss_pred HHHHHH-------HHhcccccccCcchHHHHHHHh--------CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEE
Q 037332 267 RERILS-------EILDENIKIRTPNLSECIKKRL--------RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKII 329 (1007)
Q Consensus 267 ~~~l~~-------~~~~~~~~~~~~~~~~~l~~~l--------~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~il 329 (1007)
.+.+.. .+... .....+.+++.+ .++.-++|||+|+... ....++..+.......++|
T Consensus 84 C~~i~~g~h~D~~eldaa-----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fI 158 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAA-----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFV 158 (618)
T ss_pred HHHHHcCCCCceeecCcc-----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEE
Confidence 000000 00000 001111122111 2345588999997554 4667776665444555666
Q ss_pred EEeCC-hhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 330 VTTRD-KRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 330 iTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
++|.+ ..+... ......++++.++.++..+.+.+.+-.... ....+....|++.++|.+--
T Consensus 159 L~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 159 LATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRD 221 (618)
T ss_pred EEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 55544 333322 222368999999999999888876633221 12235567888889887733
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.01 E-value=0.00011 Score=90.07 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----
Q 037332 170 QLVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF----- 244 (1007)
Q Consensus 170 ~~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f----- 244 (1007)
..+++...++..+.. +..-+.+|||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 168 ~~l~~~~~~L~~~~r----~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 168 SALDQYTTDLTAQAR----EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hhHHHHhhhHHHHhc----CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 355666666665554 3344689999999999999886543 23566999999999999999999875432
Q ss_pred -CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh-CCCcEEEEEecCCCch-------hhH--
Q 037332 245 -EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL-RQMDVFIVLDDVNKVG-------QLD-- 313 (1007)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~-- 313 (1007)
...+|...............+.. ..+...+.+.- .+++++|++|++.... +.+
T Consensus 242 ~~~~i~~l~l~~l~ag~~~~ge~e----------------~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~ 305 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGASVKGEFE----------------NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA 305 (852)
T ss_pred cCCeEEEeehhhhhcccccchHHH----------------HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH
Confidence 12333332221100000000000 11222222221 2468999999985432 111
Q ss_pred -HHhcCCCCCCCCCeEEEEeCChhhHhhc-------CcccEEEcCCCChhHHHHHHhhhhcC--CCCCChhHHHHHHHHH
Q 037332 314 -YLAGGLDQFGPGSKIIVTTRDKRVLDNF-------GVSNIYKVNGLENHEAFKLFCYYAFK--GNHGPEDLLVLSERVL 383 (1007)
Q Consensus 314 -~l~~~~~~~~~gs~iliTtR~~~v~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~a~~--~~~~~~~~~~~~~~i~ 383 (1007)
.+.+.+.. ..-++|-||...+..... ..-..+.+++++.+++.+++....-. ......-..+....++
T Consensus 306 n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 306 NLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV 383 (852)
T ss_pred HHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH
Confidence 24444331 234566666543221111 11258999999999999997543311 1111122234455666
Q ss_pred HHhCCC
Q 037332 384 YYANGN 389 (1007)
Q Consensus 384 ~~~~g~ 389 (1007)
+.+.+.
T Consensus 384 ~ls~ry 389 (852)
T TIGR03345 384 ELSHRY 389 (852)
T ss_pred HHcccc
Confidence 666554
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=2.4e-07 Score=103.22 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=128.3
Q ss_pred cCccceEEecCCCCCccc-ccccccCCCCceeccCcccccccchhhhcCCCCCEEecc-----------CCCCCccCCcc
Q 037332 769 LRSLYWLYLNNCSKLESF-PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLR-----------ECSKLVSLPEN 836 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~-----------~~~~~~~~~~~ 836 (1007)
+++++.|.+-.-..-+-. |-.+..+.+|+.|.+.++.+........--..|++|.-. .|. +.+...
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascg--gd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCG--GDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhc--cccccc
Confidence 344444444332222222 556778899999999998877422111111223333221 111 111111
Q ss_pred cCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEE
Q 037332 837 LGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKID 916 (1007)
Q Consensus 837 l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 916 (1007)
+ -...|...+.++|.+..+..++.-++.|+.|+|++|+..... .+..++.|+.|+|++|.+..+|.--..-..|+.|.
T Consensus 161 ~-~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 161 P-VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred h-hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeee
Confidence 1 123577788899999988888999999999999999977765 57789999999999999999886432223499999
Q ss_pred ccCCCCccchhhhcCCCCCCEEeeecCCCCCcCC----CCccccccccccccc
Q 037332 917 LSGNNFETLPASMKQLSRLRYLYLINCYMLQTLP----ELPLRLKLLEARNCK 965 (1007)
Q Consensus 917 L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p----~~~~~L~~L~~~~c~ 965 (1007)
|++|.++++- ++.++.+|+.||+++|-+.+.-. ..+.+|+.|.+.+.|
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999885 78899999999999996554221 234556666655543
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.99 E-value=9e-05 Score=85.11 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=91.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCc-eEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEG-KCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
...+.|+|.+|+|||+||+++++.+..++.. .+.+.. ...+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 4568899999999999999999998776532 232222 222223333332211 122334444
Q ss_pred CCCcEEEEEecCCCchh----hHHHhcCCCC-CCCCCeEEEEeCChh---------hHhhcCcccEEEcCCCChhHHHHH
Q 037332 295 RQMDVFIVLDDVNKVGQ----LDYLAGGLDQ-FGPGSKIIVTTRDKR---------VLDNFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L 360 (1007)
+ +.-+|||||++.... .+.+...+.. ...|..||+|+.... +...+....++++++.+.++..++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 244889999964321 1223222111 123556888776432 122233345899999999999999
Q ss_pred HhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 361 FCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 361 f~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
+.+++-.. ...-.+++...|++.+.|..-.
T Consensus 289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHH
Confidence 99887432 2223345677788888877643
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=0.0001 Score=89.76 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----c-
Q 037332 171 LVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----F- 244 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f- 244 (1007)
.+.+...++..+.. +..-+.++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++... +
T Consensus 164 ~l~~~~~~l~~~~r----~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAK----NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHh----cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 45555556655554 2334579999999999999886543 3356799999999999999999986432 1
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc-CcchHHHHHHHhCCCcEEEEEecCCCch-----------hh
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR-TPNLSECIKKRLRQMDVFIVLDDVNKVG-----------QL 312 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~ 312 (1007)
...+|..+... +... ...... ...+...+.+.-+.++.+|++|+++..- .-
T Consensus 238 ~~~~~~~~~~~----------l~a~-------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~ 300 (731)
T TIGR02639 238 NAKIYSLDMGS----------LLAG-------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS 300 (731)
T ss_pred CCeEEEecHHH----------Hhhh-------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH
Confidence 33444432211 1100 000000 0111222222223467899999986321 12
Q ss_pred HHHhcCCCCCCCC-CeEEEEeCChhhHhh-------cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 313 DYLAGGLDQFGPG-SKIIVTTRDKRVLDN-------FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 313 ~~l~~~~~~~~~g-s~iliTtR~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
+.+.+.+. .| -++|-+|...+.... ...-..++++.++.++..+++....
T Consensus 301 ~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 301 NLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 33444433 33 345544443222111 0112478999999999999998654
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00011 Score=84.98 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc---------------------CceE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF---------------------EGKC 248 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 248 (1007)
...+.+||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 344679999999999999886532 235678999999999999999998763211 0111
Q ss_pred EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCC
Q 037332 249 FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGS 326 (1007)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs 326 (1007)
.+.. ..... +.. .+++....... -..+++-++|+|+++.... ...++..+......+
T Consensus 92 ei~~----~~~~~-vd~-ir~l~~~~~~~---------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVDA----ASNTQ-VDA-MRELLDNAQYA---------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred Eeec----cccCC-HHH-HHHHHHHHhhC---------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 1100 00000 111 11111111000 0134567999999986543 566666655444556
Q ss_pred eEEEEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 327 KIIVTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 327 ~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
.+|++|.+. .+... ......++++.++.++..+.+.+.+-.... ....+.+..|++.++|.+-
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 666655443 23211 111357899999999998888766532221 1223456778888999774
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00013 Score=82.43 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=85.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
...+.|+|+.|+|||+||+++++.+......++++. ...+...+...+... ....+++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 356889999999999999999998765433344443 222223333332211 1223444443
Q ss_pred CCcEEEEEecCCCchh----hHHHhcCCCC-CCCCCeEEEEeCCh-h--------hHhhcCcccEEEcCCCChhHHHHHH
Q 037332 296 QMDVFIVLDDVNKVGQ----LDYLAGGLDQ-FGPGSKIIVTTRDK-R--------VLDNFGVSNIYKVNGLENHEAFKLF 361 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iliTtR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~Lf 361 (1007)
. .-+|++||+..... .+.+...+.. ...|..||+||... . +...+....++++++++.++...++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34788899854321 1222222110 12456788888542 2 1222333468899999999999999
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 362 CYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
.+++-... ..-.+++..-|+..+.+.
T Consensus 281 ~~k~~~~~--~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALS--IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCC
Confidence 88773321 122234555566655544
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.97 E-value=8.1e-05 Score=81.68 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
...+.++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+ +... .. ...+...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~----~~-~~~i~~~ 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD----CR-IDFVRNR 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc----cc-HHHHHHH
Confidence 34467899999999999988643 2346777899999999999999998763222 122 1111 11 1111111
Q ss_pred HHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc---hhhHHHhcCCCCCCCCCeEEEEeCChhhHh-h-cCcc
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV---GQLDYLAGGLDQFGPGSKIIVTTRDKRVLD-N-FGVS 344 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iliTtR~~~v~~-~-~~~~ 344 (1007)
+. ..... ..+.+.+-++|+||++.. +..+.+...+.....++++|+||....... . ....
T Consensus 88 l~-~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LT-RFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HH-HHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 11 00000 001134557899999755 222333333333456778888886543211 1 1112
Q ss_pred cEEEcCCCChhHHHHHHhh
Q 037332 345 NIYKVNGLENHEAFKLFCY 363 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~~ 363 (1007)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777788877766543
No 133
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=9.6e-06 Score=58.31 Aligned_cols=39 Identities=31% Similarity=0.585 Sum_probs=23.7
Q ss_pred CCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccch
Q 037332 888 SLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
+|++|++++|+|+++|..+.++++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666665666666666666666666554
No 134
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.96 E-value=1.7e-05 Score=85.16 Aligned_cols=93 Identities=19% Similarity=0.155 Sum_probs=59.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc-ccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCc-------ch
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR-EFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTP-------NL 286 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~ 286 (1007)
.-+..+|+|++|+||||||+++|+.+.. +|+.++|+..+++... + +.++++.+...+.......... ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~--E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE--E-VTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh--H-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3457889999999999999999997654 6999999987765322 2 6777777763222221111111 01
Q ss_pred HHHHHHH-hCCCcEEEEEecCCCch
Q 037332 287 SECIKKR-LRQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 287 ~~~l~~~-l~~kr~LlVlDdv~~~~ 310 (1007)
.+.-+.. -.+++++|++|++....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHH
Confidence 1111121 36799999999985443
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=9e-05 Score=75.39 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=114.1
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--ccCceEEEEecchhhhccCcHHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--EFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
|...+.++|-+..+..+.+.+.. ........||++|.|||+-|++++..+-. -|.+++--.++ +...+ +.-+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderG-isvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERG-ISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---ccccc-ccch
Confidence 34457899999999999998865 45678899999999999999999987633 36555433222 22222 1100
Q ss_pred HHHH--HHHHhcccccccCcchHHHHHHHhCCCc-EEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChhh-Hhh
Q 037332 267 RERI--LSEILDENIKIRTPNLSECIKKRLRQMD-VFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKRV-LDN 340 (1007)
Q Consensus 267 ~~~l--~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v-~~~ 340 (1007)
...+ +.++....... ... ..++ -.+|||+++.. +.|..+......+...+|.+..+-.-.. ...
T Consensus 106 r~Kik~fakl~~~~~~~---------~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRS---------DGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhccccc---------cCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0000 00000000000 000 0123 37889999765 4588888777766666665544432221 111
Q ss_pred -cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 037332 341 -FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN-PLALRVLG 397 (1007)
Q Consensus 341 -~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 397 (1007)
......|..++|.+++..+-+...+-... ..-..+..+.|++.++|- --|+.++-
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11125688999999999998888874333 233456678899999885 34444443
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.96 E-value=8e-05 Score=75.57 Aligned_cols=130 Identities=12% Similarity=-0.027 Sum_probs=76.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
+.+.|||++|+|||+|++++++.... .++. .... . . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~~~-~--------------------~-------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DIFF-N--------------------E-------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hhhh-c--------------------h-------hHHh-
Confidence 56899999999999999998775421 2221 0000 0 0 0011
Q ss_pred CcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCChhh-------HhhcCcccEEEcCCCChhHHHHHHhhhhcC
Q 037332 297 MDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRDKRV-------LDNFGVSNIYKVNGLENHEAFKLFCYYAFK 367 (1007)
Q Consensus 297 kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~~~v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~ 367 (1007)
..-++++||++...+ +-.+...+. ..|..||+|++.... ...+...-+++++++++++-.+++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224688899975432 212211111 356789999874422 222333458999999999988888777632
Q ss_pred CCCCChhHHHHHHHHHHHhCCCc
Q 037332 368 GNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 368 ~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
. .-.-.+++..-|++.+.|.-
T Consensus 163 ~--~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 S--SVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred c--CCCCCHHHHHHHHHHccCCH
Confidence 1 11223456666777666654
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=83.24 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=105.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--cCceEEEEecchhhhccCcHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
...+.+||-+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .+...|..........- ...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C----~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC----ESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC----HHH
Confidence 34567999999999999988643 234568899999999999999999876321 11001110000000000 000
Q ss_pred HHHHH-------HHhcccccccCcchHHHHHHH----hCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEe-C
Q 037332 268 ERILS-------EILDENIKIRTPNLSECIKKR----LRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTT-R 333 (1007)
Q Consensus 268 ~~l~~-------~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R 333 (1007)
+.+.. .+.+.. ....+++...+... ..+++-++|+|+++... ..+.|+..+....+.+.+|++| +
T Consensus 88 ~~~~~g~~~n~~~~d~~s-~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 88 RDFDAGTSLNISEFDAAS-NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHhccCCCCeEEecccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00000 000000 00001111111111 23445578999997654 3666766665444555555555 4
Q ss_pred ChhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 334 DKRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 334 ~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
...+... .....++++.+++.++....+.+.+-... .....+.+..+++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 3344322 22346899999999998888776553221 11234567888999999653
No 138
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0003 Score=81.66 Aligned_cols=186 Identities=17% Similarity=0.118 Sum_probs=107.3
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----Cce-E--------------EE
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EGK-C--------------FV 250 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~-~--------------~~ 250 (1007)
..+.+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+.... .|. | -+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 44679999999999999986542 345678999999999999999998754211 000 0 00
Q ss_pred EecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH-hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCe
Q 037332 251 ANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR-LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSK 327 (1007)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 327 (1007)
..+. .....+ +..+ +++ .+.+... ..+++-++|+|+++.. +..+.|+..+........
T Consensus 90 ieid-aas~~g-vd~i-Rel----------------~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 90 VELD-AASHGG-VDDT-REL----------------RDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred EEec-cccccC-HHHH-HHH----------------HHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 0000 000000 1111 111 1111110 1245568899998644 446666666654445666
Q ss_pred EEEEe-CChhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHHhh
Q 037332 328 IIVTT-RDKRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVLGS 398 (1007)
Q Consensus 328 iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 398 (1007)
+|++| ....+... ......+++..++.++..+.+.+.+-.... ....+.+..|++.++|.+- |+..+-.
T Consensus 151 fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66555 44444332 222468999999999998888776633221 1223456778888888773 4444433
No 139
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00029 Score=82.31 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=109.0
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCce---EEEEecchhhhccCcHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGK---CFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~l 266 (1007)
...+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+....... .-+..+..+ .-
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c--------~~ 91 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG--------EH 91 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc--------HH
Confidence 345689999999999999886542 345788999999999999999999764322100 000000000 00
Q ss_pred HHHHHHHH----h--cccccccCcchHHHHHHH-----hCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEe-
Q 037332 267 RERILSEI----L--DENIKIRTPNLSECIKKR-----LRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTT- 332 (1007)
Q Consensus 267 ~~~l~~~~----~--~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt- 332 (1007)
.+.+.... . ........+++.+ +.+. ..+++-++|+|+++... ..+.|+..+....+.+.+|++|
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 00000000 0 0000000011111 1111 12345679999997554 3666666665445666666555
Q ss_pred CChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 333 RDKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 333 R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
....+.... .....+++..++.++....+.+.+-... .....+.+..|++.++|.+.-+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 434433221 2236899999999999998887763222 12233567888999999885443
No 140
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00016 Score=84.82 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=106.0
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhh----hccCcHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREES----EKEGVLVRL 266 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~~l 266 (1007)
....++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+-..-....+- .+..+. ...+ +.
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~~~~~~~~D-vi-- 90 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECIENVNNSLD-II-- 90 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHHHhhcCCCc-EE--
Confidence 44678999999999999886542 346778999999999999999998653211000000 000000 0000 00
Q ss_pred HHHHHHHHhcccccccCcchHHHHHHH-----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEE-EeCChhhH
Q 037332 267 RERILSEILDENIKIRTPNLSECIKKR-----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIV-TTRDKRVL 338 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~ 338 (1007)
.+.. ..... .+.++.+.+. ..+++-++|+|+++.. +.+..++..+......+.+|+ |++...+.
T Consensus 91 ------eida-asn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 ------EMDA-ASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred ------EEec-cccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000 00000 0001111111 1356668899999754 346677766654444555554 44444443
Q ss_pred hh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 037332 339 DN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVL 396 (1007)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 396 (1007)
.. ......+++.+++.++..+.+...+-... .....+.+..+++.++|.+- |+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 22236899999999999888877553222 11223456788899988763 44433
No 141
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00023 Score=82.26 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=109.3
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----Cc----------------eEE
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EG----------------KCF 249 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~----------------~~~ 249 (1007)
..+.+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-... .+ ..+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3457899988888888888643 2246788999999999999999998763211 00 111
Q ss_pred EEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH-HhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCC
Q 037332 250 VANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK-RLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 326 (1007)
+.. ..... +..+ +.+. +.+.. -..+++-++|||+++.. +....|+..+.......
T Consensus 93 Id~----a~~~~-Id~i-R~L~----------------~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 93 IDG----ASNRG-IDDA-KRLK----------------EAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred Eec----ccccC-HHHH-HHHH----------------HHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 100 00000 1111 0111 11110 12356678999999765 34666666654434455
Q ss_pred eEEEEeCC-hhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhhh
Q 037332 327 KIIVTTRD-KRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRVLGSFL 400 (1007)
Q Consensus 327 ~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 400 (1007)
.+|++|.+ ..+... ......+++.+++.++..+.+...+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66665554 333322 112357899999999999888876643221 123456778888899865 6666665443
No 142
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=9.3e-07 Score=78.15 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=75.7
Q ss_pred CCEEEeccccCcccChhh---hcCCCCCEEEecCCCCCcCCccc-CCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEcc
Q 037332 843 LVYIEAERSAISQVPASI---AHLNEVKSLSFAGCRNLVLPTLL-SGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLS 918 (1007)
Q Consensus 843 L~~L~l~~~~l~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 918 (1007)
+..++|+.|.+..++... .....|+..+|++|....+|..| ..++.++.|++++|.|+++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344556666655554433 33455666677787777777655 34568888888888888888888888888888888
Q ss_pred CCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 919 GNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 919 ~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
+|.+...|..+..+.+|-.|+..+|...
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccc
Confidence 8888888887777888888888777543
No 143
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.91 E-value=4e-05 Score=85.57 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=89.8
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.++.|.+.+++++.+.+... -...+.|.++|++|+|||++|+++++.....|- .+. ...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cch------
Confidence 56789999999998876421 123456889999999999999999998755441 111 000
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF--G 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 323 (1007)
+.... .+.. .......+.....+.+.+|+||+++... .+..++..+..+ .
T Consensus 253 ----L~~k~----~Ge~----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 ----LIQKY----LGDG----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ----hhhhh----cchH----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 00000 0000 0011222222334567889999874321 011222222211 2
Q ss_pred CCCeEEEEeCChhhHhhc-----CcccEEEcCCCChhHHHHHHhhhhcC
Q 037332 324 PGSKIIVTTRDKRVLDNF-----GVSNIYKVNGLENHEAFKLFCYYAFK 367 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~a~~ 367 (1007)
.+.+||+||...+..... ..+..++++..+.++..++|..++.+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 356788888765544331 24568899999999999999877643
No 144
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00028 Score=80.14 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=106.1
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------Cce-E-------------E
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGK-C-------------F 249 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~-~-------------~ 249 (1007)
...+.++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...- .+. | |
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345689999999999999886532 236788999999999999999998753210 000 0 0
Q ss_pred EEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHH-HHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCC
Q 037332 250 VANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIK-KRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGS 326 (1007)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 326 (1007)
+. +.. ....+ +..+ +++. +.+. .-..+++-++|+|+++.. +..+.+...+.......
T Consensus 93 ~~-i~g-~~~~g-id~i-r~i~----------------~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 93 LE-IDG-ASHRG-IEDI-RQIN----------------ETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred EE-eec-cccCC-HHHH-HHHH----------------HHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 00 000 00000 1111 0111 1110 001245678899998644 33556666555444566
Q ss_pred eEEEEeCCh-hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 037332 327 KIIVTTRDK-RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVL 396 (1007)
Q Consensus 327 ~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 396 (1007)
.+|++|... .+... ......+++.++++++..+.+.+.+-... .....+.+..+++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 676666432 22221 12236789999999998888877653221 12234567888999999763 43333
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00029 Score=80.96 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=88.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
..+.|+|..|+|||.|+.++++.....+ ...+.+.. ...+...+...+... ....+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 4589999999999999999999876543 22333321 233333333332211 1223444443
Q ss_pred CCcEEEEEecCCCch---hh-HHHhcCCCC-CCCCCeEEEEeCCh---------hhHhhcCcccEEEcCCCChhHHHHHH
Q 037332 296 QMDVFIVLDDVNKVG---QL-DYLAGGLDQ-FGPGSKIIVTTRDK---------RVLDNFGVSNIYKVNGLENHEAFKLF 361 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf 361 (1007)
+ -=+|||||+.... .| +.+...+.. ...|..|||||... .+...+...-+++++..+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 2478889996442 22 222222211 13456788888753 12222344568999999999999999
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 362 CYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.+++-... ....++++.-|++.+.+..
T Consensus 456 ~kka~~r~--l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 456 RKKAVQEQ--LNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHhcC--CCCCHHHHHHHHHhccCCH
Confidence 98874322 2223456666666666553
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=9.7e-05 Score=82.07 Aligned_cols=173 Identities=20% Similarity=0.223 Sum_probs=97.8
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. .
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~------- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-G------- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h-------
Confidence 45688999999888876531 1123577899999999999999999987644331 111 0
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF-- 322 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 322 (1007)
..+.... .+.. ...+.+.+.......+.+|+||+++... .+..++..+..+
T Consensus 213 ---s~l~~k~----~ge~----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 ---SEFVQKY----LGEG----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred ---HHHHHHh----cchh----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 0111110 0000 0111222333334578899999986421 122333322221
Q ss_pred CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 323 GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||+||...+.... ...+..++++..+.++..++|..+.-+.... ..+ ..++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 235677888875543322 1345678999999999888887665322211 122 245566666654
No 147
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.88 E-value=0.00013 Score=82.64 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=88.9
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----CceEEEEecch
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EGKCFVANVRE 255 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~ 255 (1007)
-..+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 35678899999888877532 112345689999999999999999999875542 1223332 211
Q ss_pred hh--hc-cCcHHHHHHHHHHHHhcccccccCcchHHHHHHH-hCCCcEEEEEecCCCch---------h-----hHHHhc
Q 037332 256 ES--EK-EGVLVRLRERILSEILDENIKIRTPNLSECIKKR-LRQMDVFIVLDDVNKVG---------Q-----LDYLAG 317 (1007)
Q Consensus 256 ~~--~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~---------~-----~~~l~~ 317 (1007)
.. .. .+......+.+ ....++. -.+++++|+||+++... + +..++.
T Consensus 260 ~eLl~kyvGete~~ir~i----------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 260 PELLNKYVGETERQIRLI----------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred hhhcccccchHHHHHHHH----------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 00 00 00000111111 1111111 13578999999996431 1 223443
Q ss_pred CCCCCC--CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 318 GLDQFG--PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 318 ~~~~~~--~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
.+.... .+..||.||-..+.... ...+..++++..+.++..++|..+.
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 333222 34445555544433221 1345679999999999999998876
No 148
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00045 Score=81.61 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=107.7
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
..+.+||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.......-+ ..+. .-...+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~-~~c~--------~c~~c~~i 83 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG-RPCG--------TCEMCRAI 83 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCCc--------cCHHHHHH
Confidence 44689999999999998886542 34567899999999999999999876321100000 0000 00011111
Q ss_pred HHHHhcc----c--ccccCcchHHHHHHHh-----CCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCCh-h
Q 037332 271 LSEILDE----N--IKIRTPNLSECIKKRL-----RQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDK-R 336 (1007)
Q Consensus 271 ~~~~~~~----~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~-~ 336 (1007)
....... . .....++. +.+.+.+ .+++-++|||+++.. +..+.|+..+......+.+|++|.+. .
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 1000000 0 00000111 1111111 245668999999755 44666766655444566666666443 3
Q ss_pred hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 337 VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 337 v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
+... ......+++..++.++....+.+.+..... ....+.+..+++.++|.+..+.
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3222 122357889999999988888777643221 1224567788999999885444
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00048 Score=83.32 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=104.2
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----CceEEEEecchhh----hccC
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EGKCFVANVREES----EKEG 261 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~----~~~~ 261 (1007)
..+.+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.... .|..--. ++... ...+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s-C~~~~~g~~~~~d 90 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS-CVALAPGGPGSLD 90 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH-HHHHHcCCCCCCc
Confidence 34679999999999999986542 235678999999999999999998763211 0100000 00000 0000
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHH-----HhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKK-----RLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
+.. +... .....+++ +.+++ -..+++-++|||+++... ..+.|+..+......+.+|++|.+
T Consensus 91 -v~e--------idaa-s~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 91 -VTE--------IDAA-SHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred -EEE--------eccc-ccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000 0000 00000111 11111 123455678899997553 466666666544556666655543
Q ss_pred -hhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 335 -KRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 335 -~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
..+... ......|++..++.++..+.+.+.+-... .....+....|++.++|.+.
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 344332 22346899999999998888876552222 11223455778889999873
No 150
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00038 Score=72.60 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=113.0
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
...=|.++++++|.+..... -...+-|.+||++|.|||-||++|+++....| +..++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH------
Confidence 34557777888777765321 13457789999999999999999999865544 332211
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHh----CCCcEEEEEecCCCchh----------------hHHHhcCCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRL----RQMDVFIVLDDVNKVGQ----------------LDYLAGGLDQ 321 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~ 321 (1007)
++.+.. . .+...++++.. .+.+..|.+|.++.... .-+|+..+..
T Consensus 220 ---ElVqKY----i--------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 220 ---ELVQKY----I--------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ---HHHHHH----h--------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 111111 1 11222333322 35678999998853321 2234455554
Q ss_pred CC--CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc---
Q 037332 322 FG--PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP--- 390 (1007)
Q Consensus 322 ~~--~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P--- 390 (1007)
|. ..-+||..|-..+++.- -..++.++++.-+.+.-.+.|.-|+-+.... .-++ +.+++.+.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAd 360 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGAD 360 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHH
Confidence 43 34688887765554432 2357889999666677777888777543322 2233 34566677765
Q ss_pred -hHHHHHhhhhc---CC---CHHHHHHHHHHh
Q 037332 391 -LALRVLGSFLH---QK---NKLDWEIALENL 415 (1007)
Q Consensus 391 -Lal~~~~~~l~---~~---~~~~w~~~l~~l 415 (1007)
-|+.+=|+++. ++ +.+++..+.++.
T Consensus 361 lkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 361 LKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 45556666653 12 445566555544
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00028 Score=71.07 Aligned_cols=263 Identities=17% Similarity=0.171 Sum_probs=133.0
Q ss_pred CCCCCCccchhhHHHHHHHHhcc---CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCI---GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
|..-..|||-++-++++.=.+.. .....--|.++|++|.||||||.-+++.+..++... .+..-.+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~----- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKP----- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccCh-----
Confidence 33446899999888887766643 223456788999999999999999999876554311 11111111
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-hHH-HhcCCCC--------CCCCCeEE------
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-LDY-LAGGLDQ--------FGPGSKII------ 329 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~-l~~~~~~--------~~~gs~il------ 329 (1007)
.++...+.. |+... .+.+|.+..... .++ +.++..+ .++++|.+
T Consensus 92 ------------------gDlaaiLt~-Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 92 ------------------GDLAAILTN-LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------------------hhHHHHHhc-CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 112222211 22222 344566643221 111 1122111 13444433
Q ss_pred -----EEeCChhhHhhc--CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 037332 330 -----VTTRDKRVLDNF--GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ 402 (1007)
Q Consensus 330 -----iTtR~~~v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 402 (1007)
.|||...+..-. ...-+.+++..+.+|-.+...+.+..- ..+..++.+.+|+++..|-|--..-+-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 588866443221 122467888999999999998887321 2233456788999999999944333322221
Q ss_pred CCHHHHHHHHHH--hhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccCCCC--HHHHHHhhcCCCc-hhHh-HHHHhh
Q 037332 403 KNKLDWEIALEN--LKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGED--KDYVTMSQDDPNF-AYYV-LNVLVD 476 (1007)
Q Consensus 403 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~~~~~~~~-~~~~-l~~L~~ 476 (1007)
++..+... +...........+.+--.+|+...++.+..+.-.+.|-+ .+.+......+-. .++. ---|+.
T Consensus 229 ----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 229 ----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 11111000 000000112223333334455555555444443333222 3443333322211 2222 234788
Q ss_pred ccCeEEccCCeE
Q 037332 477 KSLVTISCFNKL 488 (1007)
Q Consensus 477 ~~li~~~~~~~~ 488 (1007)
.++++....|++
T Consensus 305 ~gfi~RTpRGR~ 316 (332)
T COG2255 305 QGFIQRTPRGRI 316 (332)
T ss_pred hchhhhCCCcce
Confidence 888888766654
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.85 E-value=0.00049 Score=84.66 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------
Q 037332 171 LVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------ 244 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------ 244 (1007)
.+++...++..+.. +..-+.+|||+.+++++++.|.... ...+.++|.+|+|||++|+.++.++....
T Consensus 160 ~l~~~~~~l~~~~r----~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 160 ALKKYTIDLTERAE----QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred HHHHHhhhHHHHHh----cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 45555666665554 2334579999999999999986543 33566999999999999999999874421
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccC-cchHHHHHHHh-CCCcEEEEEecCCCch----------hh
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRT-PNLSECIKKRL-RQMDVFIVLDDVNKVG----------QL 312 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~ 312 (1007)
...+|..+... +... ....... ..+...+.+.- .+++++|++|++.... .-
T Consensus 234 ~~~~~~l~l~~----------l~ag-------~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~ 296 (857)
T PRK10865 234 GRRVLALDMGA----------LVAG-------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG 296 (857)
T ss_pred CCEEEEEehhh----------hhhc-------cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH
Confidence 23344332221 1000 0000000 11222222221 2468999999986442 12
Q ss_pred HHHhcCCCCCCCCCeEEEEeCChhhHhhc-------CcccEEEcCCCChhHHHHHHhhhh
Q 037332 313 DYLAGGLDQFGPGSKIIVTTRDKRVLDNF-------GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 313 ~~l~~~~~~~~~gs~iliTtR~~~v~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
+-+.+.+.. ..-++|-+|...+..... ..-..+.+...+.++..+++....
T Consensus 297 ~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 297 NMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 233333321 234555555544431111 111356677778899888886543
No 153
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.84 E-value=2.2e-05 Score=81.07 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=58.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhc-ccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccC-------cchH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFR-EFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRT-------PNLS 287 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~~ 287 (1007)
...++|+|++|+|||||++++++.... +|+..+|+..+.+.. .+ +.++++.+...+......... ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~e-v~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EE-VTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--cc-HHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 467899999999999999999997644 688888987554421 23 777777773222211111110 0111
Q ss_pred HHHHHH-hCCCcEEEEEecCCCch
Q 037332 288 ECIKKR-LRQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 288 ~~l~~~-l~~kr~LlVlDdv~~~~ 310 (1007)
...... -+++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 222222 35799999999985443
No 154
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00035 Score=79.75 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=106.7
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc----cc----------------CceEE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR----EF----------------EGKCF 249 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~----~f----------------~~~~~ 249 (1007)
...+.+||-+..++.+..++..+. -.++..++|+.|+||||+|+.+++.+-. .. ...++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 344679999999999999886542 3456789999999999999999987521 11 00011
Q ss_pred EEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCe
Q 037332 250 VANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSK 327 (1007)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 327 (1007)
..+ .....+ +..+...+ ...... -..+++-++|+|+++... ....++..+....+.++
T Consensus 90 eld---aas~~g-Id~IReli-e~~~~~---------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 90 EMD---AASNRG-IDDIRELI-EQTKYK---------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred Eec---cccccC-HHHHHHHH-HHHhhC---------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 100 000001 11111111 100000 011355688999997553 35666666554456677
Q ss_pred EEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 328 IIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 328 iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
+|++|.+.. +... ......+++.+++.++..+.+.+.+-.... .-..+.+..|++.++|.+--+
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 777776542 2111 112368899999999998888766532221 122456778899999988433
No 155
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=1.1e-05 Score=95.67 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=92.2
Q ss_pred CCCceeccCccccc--ccchhhh-cCCCCCEEeccCCCCCc-cCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEE
Q 037332 794 ERLSYMDLSWTKIK--ELKSSID-HLERLRNLKLRECSKLV-SLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSL 869 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~--~l~~~~~-~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L 869 (1007)
.+|++|++++...- .+|..++ .+|+|++|.+.+-.... .+.....++++|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777777774432 3343443 57888888887643322 2334556778888888888888877 567788888888
Q ss_pred EecCCCCCcCCc--ccCCCCCCCEEeccCCCCCCCc-------hhhCCCCCcCEEEccCCCCc--cchhhhcCCCCCCEE
Q 037332 870 SFAGCRNLVLPT--LLSGLCSLTELDLKDCGIREIP-------QDIGSVFALEKIDLSGNNFE--TLPASMKQLSRLRYL 938 (1007)
Q Consensus 870 ~l~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L 938 (1007)
.+.+-....... .+.++++|+.||+|.......+ +.-..+|.|+.||.|+..+. .+..-+..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 777655443322 3456778888888876544322 12245778888888877665 222233445566665
Q ss_pred eeecC
Q 037332 939 YLINC 943 (1007)
Q Consensus 939 ~L~~n 943 (1007)
.+-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 55443
No 156
>PRK08116 hypothetical protein; Validated
Probab=97.80 E-value=0.00013 Score=76.89 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=57.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
..+.++|.+|+|||.||.++++.+..+...++|+. ...++..+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC
Confidence 45889999999999999999998866533344443 3334444433322211 1112223343443
Q ss_pred CcEEEEEecCC--CchhhH--HHhcCCC-CCCCCCeEEEEeCCh
Q 037332 297 MDVFIVLDDVN--KVGQLD--YLAGGLD-QFGPGSKIIVTTRDK 335 (1007)
Q Consensus 297 kr~LlVlDdv~--~~~~~~--~l~~~~~-~~~~gs~iliTtR~~ 335 (1007)
-. ||||||+. ...+|. .+...+. ....|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33 89999993 233332 2222221 123566788888643
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.2e-06 Score=77.50 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=74.9
Q ss_pred CCCCCCCEEEeccccCcccChhhhc-CCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEE
Q 037332 838 GSLKSLVYIEAERSAISQVPASIAH-LNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKID 916 (1007)
Q Consensus 838 ~~l~~L~~L~l~~~~l~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 916 (1007)
.....|+..++++|.+..+|..|.. ++.++.|++++|.+..+|..+..++.|+.|++++|.+...|.-+..+.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 3344555666777777777766543 357777888888877788777788888888888888888777777788888888
Q ss_pred ccCCCCccchhhhcCCCCCCEEeeecCCCCCcC
Q 037332 917 LSGNNFETLPASMKQLSRLRYLYLINCYMLQTL 949 (1007)
Q Consensus 917 L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~ 949 (1007)
..+|.+..+|..+-.-..+-..++.+++..+.-
T Consensus 130 s~~na~~eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 130 SPENARAEIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred CCCCccccCcHHHhccccHHHHHhcCCcccccC
Confidence 888887777755322222222333555444433
No 158
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.78 E-value=0.00031 Score=74.83 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc--cCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
-+.++|++|+|||++|+.++..+... .....|+... ...+.. ...+... ......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~~l~~----~~~g~~~----~~~~~~~~~--- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RDDLVG----QYIGHTA----PKTKEILKR--- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HHHHhH----hhcccch----HHHHHHHHH---
Confidence 57899999999999999988865432 1111233211 111111 1111110 111122222
Q ss_pred CCcEEEEEecCCCc-----------hhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc--------CcccEEEcCCCChhH
Q 037332 296 QMDVFIVLDDVNKV-----------GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF--------GVSNIYKVNGLENHE 356 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~--------~~~~~~~l~~L~~~~ 356 (1007)
...-+|+||+++.. +.++.+...+.....+.+||+++......... .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 23468899999633 22444555544444556677766543221111 123578999999999
Q ss_pred HHHHHhhhh
Q 037332 357 AFKLFCYYA 365 (1007)
Q Consensus 357 a~~Lf~~~a 365 (1007)
..+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999987765
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00074 Score=77.28 Aligned_cols=189 Identities=13% Similarity=0.061 Sum_probs=104.5
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----cCceEEEEecchhhh--ccCcH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----FEGKCFVANVREESE--KEGVL 263 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~~ 263 (1007)
....++|-+.-++.+.+++..+. -.+...++|+.|+||||+|+.++..+... .++..- .++..... ..+ +
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d-~ 90 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPD-L 90 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCc-E
Confidence 34578999999999999986542 34567789999999999999999875321 111100 00000000 000 0
Q ss_pred HHHHHHHHHHHhcccccccCcchHHHHHHHh-----CCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCC-h
Q 037332 264 VRLRERILSEILDENIKIRTPNLSECIKKRL-----RQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRD-K 335 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~ 335 (1007)
. .+.... ... .+..+.+.+.. .+++-++|+|+++.. +..+.++..+....+...+|++|.+ .
T Consensus 91 ~--------eidaas-~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 91 I--------EIDAAS-NRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred E--------EEeCcc-CCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 0 000000 000 00111222211 345679999999755 3456666655544445555555533 3
Q ss_pred hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 336 RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 336 ~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
.+... ......+++.+++.++....+.+.+-.... ....+.+..+++.++|.+-.+.
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 33222 122357899999999988888776532221 2223456778888888765433
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.77 E-value=0.00083 Score=69.18 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
...+.++|.+|+|||+||.++++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357889999999999999999998765544445543
No 161
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.75 E-value=5.3e-05 Score=70.30 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=46.4
Q ss_pred ccEEEcCccccccCchhHHHHHHHHhC-------CCce----------EecC-CCCCCCcchHHHHHHhhccceeEEEec
Q 037332 19 FDVFLSFRGEDTRYNFTSHLFAALSRK-------KIKT----------FTDE-ELKRGDEISPAILNAIIGSKILVIIFS 80 (1007)
Q Consensus 19 ~dvfis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s 80 (1007)
|.|||||++.|.. ..+..|.+.+... .+.. +.+. +....+.|...|.++|..|.++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999863 3667777777663 2211 1122 333445789999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHhcCCCeEEEEE
Q 037332 81 KNYASSKWCLDELVKILECKNMNDQVVVPVF 111 (1007)
Q Consensus 81 ~~~~~s~~c~~el~~~~~~~~~~~~~v~pvf 111 (1007)
++-..|.|+-.|+..+++ .+..|+.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998776 233466654
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00081 Score=79.24 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----------------------cCc
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----------------------FEG 246 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~~ 246 (1007)
...+.++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+-.. |+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 344679999999999999986542 34668899999999999999998865311 111
Q ss_pred eEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCC
Q 037332 247 KCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGP 324 (1007)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~ 324 (1007)
. .+ +. ..... +..+. .+..++... -..+++-++|+|+++... .++.|+..+.....
T Consensus 93 ~-~l-d~---~~~~~-vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 93 H-EL-DA---ASNNS-VDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred E-Ee-cc---cccCC-HHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 0 00 00 00000 11111 111111000 012345588999987554 46667766654455
Q ss_pred CCeEEEEe-CChhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 325 GSKIIVTT-RDKRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 325 gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
.+.+|++| +...+... .....++++.+++.++....+.+.+-.... ....+.+..|++.++|..-
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 66666544 44444432 223468999999999999888876633221 2223456788889998764
No 163
>PRK12377 putative replication protein; Provisional
Probab=97.71 E-value=0.0007 Score=69.90 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=29.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998866544455554
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.71 E-value=0.00047 Score=81.19 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCCccchhhHHHHHHHHh---ccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLL---CIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L---~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.++++|.++..+++.+.+ ... ....+-|.++|++|+|||++|++++......| +.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s------- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGS------- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHH-------
Confidence 456888888777766554 211 12245689999999999999999998653221 111110
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF--G 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 323 (1007)
.+..... +. ........+.......+++|+|||++... .+..++..+..+ .
T Consensus 251 ---~f~~~~~----g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 ---EFVEMFV----GV----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred ---HHHHHhh----hh----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1100000 00 00122334445556778999999996431 133344333222 2
Q ss_pred CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 324 PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
.+..||.||...+.... ...+..+.++..+.++-.+++..++-.... ........+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence 45566667766543332 124578899999999999999887743211 1122345677777774
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.0012 Score=81.64 Aligned_cols=168 Identities=11% Similarity=0.134 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------
Q 037332 171 LVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------ 244 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------ 244 (1007)
.+++...++..+.. +...+.+|||+.++++++..|.... ...+.++|++|+|||++|+.++.++...+
T Consensus 155 ~l~~~~~~l~~~~~----~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~ 228 (852)
T TIGR03346 155 ALEKYARDLTERAR----EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK 228 (852)
T ss_pred HHHHHhhhHHHHhh----CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc
Confidence 45555555555544 2334579999999999999986543 24556899999999999999999875432
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc-CcchHHHHHHHhC-CCcEEEEEecCCCch----------hh
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR-TPNLSECIKKRLR-QMDVFIVLDDVNKVG----------QL 312 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~ 312 (1007)
...+|..++.. +.. +...... ...+...+.+.-+ +++.+|++|++.... ..
T Consensus 229 ~~~~~~l~~~~----------l~a-------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~ 291 (852)
T TIGR03346 229 NKRLLALDMGA----------LIA-------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG 291 (852)
T ss_pred CCeEEEeeHHH----------Hhh-------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH
Confidence 23344332211 110 0000000 0112222322222 468999999986432 12
Q ss_pred HHHhcCCCCCCCC-CeEEEEeCChhhHhh-------cCcccEEEcCCCChhHHHHHHhhh
Q 037332 313 DYLAGGLDQFGPG-SKIIVTTRDKRVLDN-------FGVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 313 ~~l~~~~~~~~~g-s~iliTtR~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
+.+.+.+ ..| -++|-+|...+.... ...-..+.++..+.++..+++...
T Consensus 292 ~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 292 NMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 2233332 223 345555544433111 111246789999999999988655
No 166
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0009 Score=78.83 Aligned_cols=193 Identities=17% Similarity=0.114 Sum_probs=105.2
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecchhhhccCcHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-... ..... ..++. -...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~-~~Cg~--------C~~C~ 82 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP-EPCGK--------CELCR 82 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC-CCCcc--------cHHHH
Confidence 344679999999999999886542 235678999999999999999999763321 10000 00000 00001
Q ss_pred HHHHHHh------cccccccCcchHHHHHHH----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCCh-
Q 037332 269 RILSEIL------DENIKIRTPNLSECIKKR----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDK- 335 (1007)
Q Consensus 269 ~l~~~~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~- 335 (1007)
.+..... ........++..+.+... ..+++-++|+|+++.. +....|+..+......+.+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1100000 000000001111111110 1245568899999755 34666766665434455555555443
Q ss_pred hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 336 RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 336 ~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
.+... ......+++..++.++....+.+.+-.... ....+.+..|++.++|.+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 33322 122367888999999888877766532211 1123457788899999875444
No 167
>CHL00181 cbbX CbbX; Provisional
Probab=97.69 E-value=0.0016 Score=69.29 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=71.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc-c-CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE-F-EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
..+.++|++|+||||+|+.++...... + ...-|+.. + ...+... ..+... ......+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~-----~~~l~~~----~~g~~~----~~~~~~l~~-- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T-----RDDLVGQ----YIGHTA----PKTKEVLKK-- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c-----HHHHHHH----Hhccch----HHHHHHHHH--
Confidence 357899999999999999998865321 1 11112221 0 1111111 111110 111122222
Q ss_pred CCCcEEEEEecCCCc-----------hhhHHHhcCCCCCCCCCeEEEEeCChhhHhh--------cCcccEEEcCCCChh
Q 037332 295 RQMDVFIVLDDVNKV-----------GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN--------FGVSNIYKVNGLENH 355 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~--------~~~~~~~~l~~L~~~ 355 (1007)
...-+|+||+++.. +..+.+...+.....+.+||+++........ -.....+++++++.+
T Consensus 121 -a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 121 -AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred -ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 12358999999642 2344455544444455667777654332211 123468899999999
Q ss_pred HHHHHHhhhhc
Q 037332 356 EAFKLFCYYAF 366 (1007)
Q Consensus 356 ~a~~Lf~~~a~ 366 (1007)
|..+++...+-
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998877763
No 168
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=0.0001 Score=79.73 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=60.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCc-------ch
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTP-------NL 286 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~ 286 (1007)
.-..++|+|++|.|||||++.+++.+..+ |+..+|+..+++.. .. +.++++.+...+.......... ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~--~E-VtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP--EE-VTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC--cc-HHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34679999999999999999999987655 99899988664422 23 7778888754333222211111 11
Q ss_pred HHHHHHH-hCCCcEEEEEecCCCch
Q 037332 287 SECIKKR-LRQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 287 ~~~l~~~-l~~kr~LlVlDdv~~~~ 310 (1007)
.+..+.. -++++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 1222222 36899999999996543
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.68 E-value=0.00081 Score=83.00 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc------c
Q 037332 171 LVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE------F 244 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f 244 (1007)
..++...++..+.. ...-+.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.++... -
T Consensus 161 ~l~~~~~~l~~~a~----~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 161 TLEEFGTNLTKEAI----DGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred HHHHHHHHHHHHHH----cCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 55666666655543 1223468999999999999996543 2345699999999999999999986432 1
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc-CcchHHHHHHHhCCCcEEEEEecCCCch----------hhH
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR-TPNLSECIKKRLRQMDVFIVLDDVNKVG----------QLD 313 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~ 313 (1007)
...+|..+... +.. +...... ...+...+.+.-..++++|++|++.... .-+
T Consensus 235 ~~~i~~l~~~~----------l~a-------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~ 297 (821)
T CHL00095 235 DKLVITLDIGL----------LLA-------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAAN 297 (821)
T ss_pred CCeEEEeeHHH----------Hhc-------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHH
Confidence 23444433211 110 0110000 0112222322223567999999984221 112
Q ss_pred HHhcCCCCCCCCCeEEEEeCChhhHhh-------cCcccEEEcCCCChhHHHHHHhh
Q 037332 314 YLAGGLDQFGPGSKIIVTTRDKRVLDN-------FGVSNIYKVNGLENHEAFKLFCY 363 (1007)
Q Consensus 314 ~l~~~~~~~~~gs~iliTtR~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~ 363 (1007)
-+.+.+. ...-++|.+|...+.... ...-..++++..+.++...++..
T Consensus 298 lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 298 ILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 2333322 122456666665543221 11124678888999988887754
No 170
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0021 Score=73.30 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=91.9
Q ss_pred CCccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
.+-+|.++-.++|.+.|.- ..-...+++++|++|+|||.|++.++.-+..+|- ++-+..++..+.-.+ -.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~sLGGvrDEAEIRG----HRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RISLGGVRDEAEIRG----HRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EEecCccccHHHhcc----ccc
Confidence 4679999999999998852 2234579999999999999999999998877764 222222222221111 001
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh------hHHHhcCCCCCC-------------CCCeE-
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ------LDYLAGGLDQFG-------------PGSKI- 328 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~-------------~gs~i- 328 (1007)
.- ...-+..+.+.+++. +.+.=+++||.++.... -.+++..+..-. .=|.|
T Consensus 398 TY--------IGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TY--------IGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cc--------cccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 10 000112233334333 44567899999864432 233333332111 11444
Q ss_pred EEEeCCh-h-h-HhhcCcccEEEcCCCChhHHHHHHhhhh
Q 037332 329 IVTTRDK-R-V-LDNFGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 329 liTtR~~-~-v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
.|||-|. + + +..+..-+++++.+.+++|-.+.-.++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4555432 1 0 1112233789999999999888887775
No 171
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0016 Score=76.21 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=104.1
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----CceEEEEecchhhh--ccC
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EGKCFVANVREESE--KEG 261 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~--~~~ 261 (1007)
|...+.++|.+..++.+.+++..+. -.+...++|+.|+||||+|+.++..+-..- +|..- ..+..... ..+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C-~~C~~i~~g~~~d 89 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC-EICKAITNGSLMD 89 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc-HHHHHHhcCCCCC
Confidence 3445789999999999999987543 346777899999999999999988653210 00000 00000000 000
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHH-----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEe-C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKR-----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTT-R 333 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt-R 333 (1007)
+.. +..... . .-+..+.+.+. ..+++-++|+|+++.. +.+..|+..+........+|++| .
T Consensus 90 -v~e--------idaas~-~-~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 90 -VIE--------IDAASN-N-GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred -eEE--------eecccc-C-CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 000 000000 0 00011111111 1345668899999755 44667776655434455555544 3
Q ss_pred ChhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 334 DKRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 334 ~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
...+... ......++..+++.++..+.+...+-.... ....+.+..|++.++|.+.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMR 215 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 3333222 122357889999999988888776632221 1223556778888888764
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.7e-05 Score=53.95 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=32.6
Q ss_pred CCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 910 FALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 910 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
++|++|++++|+++.+|..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999765
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.62 E-value=0.00037 Score=65.19 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 174
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0016 Score=75.86 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=107.6
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-----cCceEEEEecchhhh--ccCc
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-----FEGKCFVANVREESE--KEGV 262 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~ 262 (1007)
.....++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. +++.. ...++.... ..+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d- 89 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD- 89 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC-
Confidence 344679999999999999986542 34678899999999999999999875321 11110 000000000 000
Q ss_pred HHHHHHHHHHHHhcccccccCcchHHHH---HH-HhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-
Q 037332 263 LVRLRERILSEILDENIKIRTPNLSECI---KK-RLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK- 335 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~- 335 (1007)
+.. +.+.. ....++..+.. .. -..+++-++|+|+++... .++.++..+....+.+.+|.+|.+.
T Consensus 90 v~~--------idgas-~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 90 VIE--------IDGAS-NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred eEE--------ecCcc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 000 00000 00001111111 10 113456689999997554 4677777766545566666665443
Q ss_pred hhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 336 RVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 336 ~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
.+... ......++..+++.++..+.+.+.+..... ....+.+..|++.++|.+-.
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 33222 122357899999999998888776643221 22345667788889997743
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0013 Score=71.79 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=80.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
....+.|||..|.|||.|++++.+......+...++... .......+...+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~--------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRD--------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHh--------hhHHHHHHhh
Confidence 467899999999999999999999877766543333211 11222222222221 2234455554
Q ss_pred CCCcEEEEEecCCCchh---h-HHHhcCCCC-CCCCCeEEEEeCCh---------hhHhhcCcccEEEcCCCChhHHHHH
Q 037332 295 RQMDVFIVLDDVNKVGQ---L-DYLAGGLDQ-FGPGSKIIVTTRDK---------RVLDNFGVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~L 360 (1007)
.-=++++||++-... | +.+...+.. ...|-.||+|++.. .+...+...-++++.+.+.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 233888999954322 1 222222211 13445899998543 2233344556899999999999999
Q ss_pred Hhhhhc
Q 037332 361 FCYYAF 366 (1007)
Q Consensus 361 f~~~a~ 366 (1007)
+.+++-
T Consensus 253 L~kka~ 258 (408)
T COG0593 253 LRKKAE 258 (408)
T ss_pred HHHHHH
Confidence 988764
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.61 E-value=0.00037 Score=81.08 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=94.4
Q ss_pred CCCccchhhHHHHHHHHhc---c-------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLLC---I-------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.++++|.+..++++.+++. . +....+-+.++|++|+|||++|++++......| +....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~-------- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG-------- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH--------
Confidence 3568888877776665442 1 112345688999999999999999998653322 11111
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF--G 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 323 (1007)
..+.... .+. ....+...+.......+.+|+|||++... .+..++..+... .
T Consensus 122 --~~~~~~~----~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 --SDFVEMF----VGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred --HHHHHHH----hcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111100 000 00122333444444567899999985431 122233332211 2
Q ss_pred CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 324 PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.+-.||.||........ ...+..++++..+.++-.+++..+.-+..... ......+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 34455566655432221 13457889999999999999987763322211 112346777777743
No 177
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=4e-05 Score=76.05 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=107.9
Q ss_pred hhccCccceEEecCCCCCccc----ccccccCCCCceeccCccccc----ccc-------hhhhcCCCCCEEeccCCCCC
Q 037332 766 ICKLRSLYWLYLNNCSKLESF----PEILEKMERLSYMDLSWTKIK----ELK-------SSIDHLERLRNLKLRECSKL 830 (1007)
Q Consensus 766 ~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~----~l~-------~~~~~l~~L~~L~l~~~~~~ 830 (1007)
+.-+..+..+++++|.+.+.- ...+.+-.+|+..+++.-... +++ ..+-.||.|+..++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788889999998776543 344555677888777753221 233 24567888888888888766
Q ss_pred ccCCc----ccCCCCCCCEEEeccccCcccC-----hh---------hhcCCCCCEEEecCCCCCcCCc-----ccCCCC
Q 037332 831 VSLPE----NLGSLKSLVYIEAERSAISQVP-----AS---------IAHLNEVKSLSFAGCRNLVLPT-----LLSGLC 887 (1007)
Q Consensus 831 ~~~~~----~l~~l~~L~~L~l~~~~l~~~~-----~~---------~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~ 887 (1007)
...|. .+++-+.|.+|.+++|++..+- .. ...-|.|+......|+....|. .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 55554 3456677888888888777432 11 1233566666666666433332 122224
Q ss_pred CCCEEeccCCCCCC------CchhhCCCCCcCEEEccCCCCccc-----hhhhcCCCCCCEEeeecCCCC
Q 037332 888 SLTELDLKDCGIRE------IPQDIGSVFALEKIDLSGNNFETL-----PASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~------lp~~l~~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~~l 946 (1007)
+|+.+.+..|.|.. +...+..+.+|+.|+|..|.|+.. ...+..-+.|+.|.+.+|-+.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 67777777776652 122334566777777777766622 222334455677777777443
No 178
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.59 E-value=0.001 Score=70.05 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCCCccchhhHHHHHHHHhccCCCC-eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPV-FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
..+.+-+|+.++..+..++...+.. ...|.|+|.+|.|||.+.+.+.+....+ .+|+..+. ... .+.+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~e-cft----~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVE-CFT----YAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHH-hcc----HHHHHHH
Confidence 3467899999999999999766653 4456899999999999999999976333 45665332 222 5556666
Q ss_pred HHHHHh-cccccccC----c---chHHHHHHH--h--CCCcEEEEEecCCCchhhHHH--------hcCCCCCCCCCeEE
Q 037332 270 ILSEIL-DENIKIRT----P---NLSECIKKR--L--RQMDVFIVLDDVNKVGQLDYL--------AGGLDQFGPGSKII 329 (1007)
Q Consensus 270 l~~~~~-~~~~~~~~----~---~~~~~l~~~--l--~~kr~LlVlDdv~~~~~~~~l--------~~~~~~~~~gs~il 329 (1007)
|+.+.. ........ + +....+.++ . +++.++||||+++...+.+.. ...++ -+ .-+|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEE
Confidence 666653 11111110 1 122333331 1 246899999999766653322 11111 12 3344
Q ss_pred EEeCChhhHhh---cCcc--cEEEcCCCChhHHHHHHhhh
Q 037332 330 VTTRDKRVLDN---FGVS--NIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 330 iTtR~~~v~~~---~~~~--~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
+++-....... +|.- -++..+.-+.+|..+++.+.
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44432211111 2332 35677888999999888643
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0021 Score=69.76 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=60.6
Q ss_pred CcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCC
Q 037332 297 MDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGP 372 (1007)
Q Consensus 297 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 372 (1007)
++-++|+|+++.. +....++..+....+++.+|+||.+.+ +... ......+.+.+++.+++.+.+.... . ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~-- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ES-- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cC--
Confidence 3445577999754 446666666554456777777777664 3322 2223679999999999998887653 1 11
Q ss_pred hhHHHHHHHHHHHhCCCchHHHHH
Q 037332 373 EDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 373 ~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
..+.+..++..++|.|+....+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567788999999765544
No 180
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00094 Score=78.49 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc--c---Cce-E-------------EE
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--F---EGK-C-------------FV 250 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f---~~~-~-------------~~ 250 (1007)
...+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+-.. . .|. | |+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 345689999999999999886542 34567899999999999999999875321 1 000 0 00
Q ss_pred EecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH-hCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCe
Q 037332 251 ANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR-LRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSK 327 (1007)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 327 (1007)
. +. .....+ +.++ +++.. .+... ..+++-++|+|+++... ....|+..+....+.+.
T Consensus 92 e-id-~~s~~~-v~~i-r~l~~----------------~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 92 E-ID-GASNTG-VDDI-RELRE----------------NVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred e-ee-ccCccC-HHHH-HHHHH----------------HHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 0 00 000000 1111 11111 11100 12345578899997553 35666665554445666
Q ss_pred EEEEe-CChhhHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 037332 328 IIVTT-RDKRVLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRVL 396 (1007)
Q Consensus 328 iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 396 (1007)
+|++| ....+... ......+++..++.++....+...+-... ..-..+.+..|++.++|.. .|+..+
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66555 44444332 12235788999999998887776552221 1122345677888888865 444444
No 181
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.53 E-value=9.5e-05 Score=73.46 Aligned_cols=206 Identities=18% Similarity=0.095 Sum_probs=144.8
Q ss_pred ccccccccEEecCCccccccch----hhhhccCccceEEecCCCCCcc-----------cccccccCCCCceeccCcccc
Q 037332 742 IESLTTLVKLDLSYCTRLKSLS----TSICKLRSLYWLYLNNCSKLES-----------FPEILEKMERLSYMDLSWTKI 806 (1007)
Q Consensus 742 ~~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~-----------~~~~l~~l~~L~~L~l~~n~l 806 (1007)
+.-+..+..++|++|.+.+... ..+.+-.+|+..+++.- .++. +...+-+||+|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4457889999999998876644 44556677888887762 2221 224567899999999999998
Q ss_pred c-ccc----hhhhcCCCCCEEeccCCCCCcc----CC---------cccCCCCCCCEEEeccccCcccChh-----hhcC
Q 037332 807 K-ELK----SSIDHLERLRNLKLRECSKLVS----LP---------ENLGSLKSLVYIEAERSAISQVPAS-----IAHL 863 (1007)
Q Consensus 807 ~-~l~----~~~~~l~~L~~L~l~~~~~~~~----~~---------~~l~~l~~L~~L~l~~~~l~~~~~~-----~~~l 863 (1007)
. ..| ..+++-+.|.+|.+++|..-.. +. ....+-|.|+......|.+...+.. +...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 7 333 4567889999999998864211 11 1234568899999999988866532 3444
Q ss_pred CCCCEEEecCCCCCcC------CcccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCcc--chh---
Q 037332 864 NEVKSLSFAGCRNLVL------PTLLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFET--LPA--- 927 (1007)
Q Consensus 864 ~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~--lp~--- 927 (1007)
.+|+.+.+..|.+..- -..+..+.+|+.|+|.+|-++. +...+...+.|++|.+..|-++. ...
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 7899999998875321 1123567899999999998884 33445566779999999997762 111
Q ss_pred hh--cCCCCCCEEeeecCCCCCc
Q 037332 928 SM--KQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 928 ~~--~~l~~L~~L~L~~n~~l~~ 948 (1007)
.+ ...|+|..|...+|..-+.
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HhhhhcCCCccccccchhhhcCc
Confidence 12 4468999999999876553
No 182
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.0013 Score=73.67 Aligned_cols=162 Identities=18% Similarity=0.192 Sum_probs=93.4
Q ss_pred hHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc
Q 037332 200 SRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI 279 (1007)
Q Consensus 200 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 279 (1007)
.-+.++.+.+.... .++.|+|+-++||||+++.+.....+. .+++........... +.+..+.
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~-l~d~~~~---------- 86 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIE-LLDLLRA---------- 86 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhh-HHHHHHH----------
Confidence 34445555543222 299999999999999997776655444 444432211111111 1111111
Q ss_pred cccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh------cCcccEEEcCCCC
Q 037332 280 KIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN------FGVSNIYKVNGLE 353 (1007)
Q Consensus 280 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~------~~~~~~~~l~~L~ 353 (1007)
..... ..++..++||.|.....|+.....+...++. +|+||+-+...... .|-...+++.||+
T Consensus 87 ---------~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 87 ---------YIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ---------HHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111 1177899999999999998887776655555 88888877654332 2445688999999
Q ss_pred hhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 354 NHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 354 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
..|-..+-...+ . ...... .-+-.-..||.|-++..
T Consensus 156 F~Efl~~~~~~~----~-~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 156 FREFLKLKGEEI----E-PSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHHHhhccccc----c-hhHHHH-HHHHHHHhCCCcHHHhC
Confidence 998766542000 0 001111 22223347899987654
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0037 Score=67.45 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=107.8
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc---------------ccCceEEEEecchhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR---------------EFEGKCFVANVREES 257 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 257 (1007)
+.++|-+..++.+.+.+..+. -.+...++|+.|+||+++|.++++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468999999999999886542 2478899999999999999999886522 23334444321000
Q ss_pred hccCcHHHHHHHHHHHHh--cccccccCcchHHHHHHHh-----CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeE
Q 037332 258 EKEGVLVRLRERILSEIL--DENIKIRTPNLSECIKKRL-----RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKI 328 (1007)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~i 328 (1007)
.... .. .......+ ........-+.++.+.+.+ .+++-++|+|+++... ....++..+.... .+.+
T Consensus 82 ~g~~-~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKL-IT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccc-cc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0000 00 00000110 0000000011223333333 3456789999987554 3555655554334 3455
Q ss_pred EEEe-CChhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 329 IVTT-RDKRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 329 liTt-R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
|++| ....+.... .....+++.++++++..+.+.+..... ... .....++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHH
Confidence 5444 444443332 234689999999999999998764211 111 1135788999999966544
No 184
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.00033 Score=73.27 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
..+.++|++|+|||.||.++.+....+...+.|+. ..++...+...... ......++. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~~-------~~~~~~l~~-l~- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARRE-------LQLESAIAK-LD- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHhC-------CcHHHHHHH-Hh-
Confidence 45899999999999999999997655443445554 34444444322111 122223332 22
Q ss_pred CcEEEEEecCCCc---hhh-HHHhcCCCC-CCCCCeEEEEeCCh
Q 037332 297 MDVFIVLDDVNKV---GQL-DYLAGGLDQ-FGPGSKIIVTTRDK 335 (1007)
Q Consensus 297 kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~iliTtR~~ 335 (1007)
+-=||||||+... +.+ +.+...+.. ...+ .+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 3349999999422 111 222222211 1223 588888754
No 185
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.48 E-value=0.0011 Score=79.68 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc------c
Q 037332 171 LVDVIVKDILKKLESVTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE------F 244 (1007)
Q Consensus 171 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f 244 (1007)
.+++...++..+.. ....+.++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++... .
T Consensus 168 ~l~~~~~~l~~~a~----~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~ 241 (758)
T PRK11034 168 RMENFTTNLNQLAR----VGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_pred HHHHHHHhHHHHHH----cCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhc
Confidence 55566666655443 1223569999999999999887632 2345689999999999999999875332 1
Q ss_pred CceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcch-HHHHHHHhCCCcEEEEEecCCCc--------hh--hH
Q 037332 245 EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNL-SECIKKRLRQMDVFIVLDDVNKV--------GQ--LD 313 (1007)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~--------~~--~~ 313 (1007)
+..+|..+ +..+ . .+.......+.. ...+...-+.++.+|+||+++.. .+ ..
T Consensus 242 ~~~~~~l~----------~~~l----l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~ 304 (758)
T PRK11034 242 DCTIYSLD----------IGSL----L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA 304 (758)
T ss_pred CCeEEecc----------HHHH----h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHH
Confidence 22333221 1111 0 000000000111 12222222346789999999633 11 21
Q ss_pred -HHhcCCCCCCCCCeEEEEeCChhhHhh-------cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 314 -YLAGGLDQFGPGSKIIVTTRDKRVLDN-------FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 314 -~l~~~~~~~~~gs~iliTtR~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
.+.+.+. ...-+||-+|...+.... ...-..++++..+.+++.+++....
T Consensus 305 nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 305 NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1333322 122344545544332111 0111478999999999999987553
No 186
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00081 Score=70.05 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=23.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+.|+|++|+|||+||.++.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568999999999999999999876443
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=4.6e-05 Score=90.38 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCCCceeccCccccc--ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc--ChhhhcCCCCCE
Q 037332 793 MERLSYMDLSWTKIK--ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV--PASIAHLNEVKS 868 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~ 868 (1007)
+|+|++|.+++-.+. ++.....++|+|..|++++++.... ..++++++|+.|.+.+-.+..- -..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554333 2223344555555555555443222 3445555555555555444421 123455666666
Q ss_pred EEecCCCCCcCC-------cccCCCCCCCEEeccCCCCCC
Q 037332 869 LSFAGCRNLVLP-------TLLSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 869 L~l~~~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~ 901 (1007)
|++|.......+ +.-..+|+|+.||.|++.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 666655432222 122457788888888777663
No 188
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.45 E-value=0.003 Score=72.07 Aligned_cols=175 Identities=18% Similarity=0.121 Sum_probs=93.0
Q ss_pred CCccchhhHHHHHHHHhc---c-----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHH
Q 037332 193 DGLVGLNSRVEQIKSLLC---I-----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 264 (1007)
+++.|.+..++.+.+... . +-...+-|.++|++|.|||.+|+++++.+...| +..........
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~----- 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGG----- 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhccc-----
Confidence 567788776666654221 0 113456789999999999999999999764332 22111110000
Q ss_pred HHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--------------hHHHhcCCCCCCCCCeEEE
Q 037332 265 RLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--------------LDYLAGGLDQFGPGSKIIV 330 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~ili 330 (1007)
..+. ....+.+.+...-...+++|++|+++.... +..+...+.....+.-||.
T Consensus 299 ---------~vGe----se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 299 ---------IVGE----SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ---------ccCh----HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0000 001122222222235689999999863211 1112221221223344566
Q ss_pred EeCChhhHh-----hcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 331 TTRDKRVLD-----NFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 331 TtR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
||....... ....++.+.++.-+.++-.++|..+..+...... .......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 776553222 1235678899999999999999877643221100 0112356666676664
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.45 E-value=0.011 Score=59.69 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=40.6
Q ss_pred CCCCCccchhhHHHHHHHHh---ccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 190 TDSDGLVGLNSRVEQIKSLL---CIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+.++|.+.+++.|.+-. ..+. ...-|.+||..|.|||++++++.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34467999999999887632 2332 34567789999999999999999987554
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.001 Score=67.86 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh-h-hcccCc
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ-N-FREFEG 246 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~ 246 (1007)
..+.++......+..++.. ..+|.+.|++|.|||+||.++..+ + .+.|..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 4567788888888887754 248999999999999999998884 3 344553
No 191
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00061 Score=71.49 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..+.|+|++|+|||+||.+++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999886543
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.0011 Score=77.56 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=42.9
Q ss_pred CCCCCCccchhhHHHHHHHHhccCC---CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGL---PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
|...+.++|-++.++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455789999999999999886432 2346899999999999999999998653
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.31 E-value=0.0003 Score=69.10 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=26.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
..-+.++|.+|+|||.||.++.+....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999997654433355554
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.31 E-value=0.0031 Score=77.27 Aligned_cols=174 Identities=18% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
.+++.|++..++++.+++... -...+.|.++|++|+|||++|+++++.....| +..+........
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHHhccc
Confidence 355889999999988876321 12346788999999999999999998764332 211111110000
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-------------hhHHHhcCCCCC-CCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-------------QLDYLAGGLDQF-GPGS 326 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~-~~gs 326 (1007)
.+ .....+...+.......+.+|+||+++... ....+...+... ..+.
T Consensus 253 --------------~g----~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 253 --------------YG----ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --------------cc----HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 000112223333334566799999985421 122333332221 2344
Q ss_pred eEEE-EeCChhhH-hhc----CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 327 KIIV-TTRDKRVL-DNF----GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 327 ~ili-TtR~~~v~-~~~----~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.++| ||....-. ... ..+..+.+...+.++..+++..+.-+..... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 4455 44433211 111 2345778888888888888875542211111 112456677777764
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.001 Score=71.82 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
..+.++|.+|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998765544455554
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0024 Score=78.25 Aligned_cols=172 Identities=17% Similarity=0.221 Sum_probs=95.0
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
..+.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++++.....| +.....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~------ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE------ 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH------
Confidence 5678888888888776542 112345688999999999999999999865433 1111111
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--------------hhHHHhcCCCCC--CCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--------------QLDYLAGGLDQF--GPG 325 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~g 325 (1007)
+. ....++ ....+...+...-+..+.+|++|+++... ....++..+... ..+
T Consensus 523 ----l~----~~~vGe----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 523 ----IL----SKWVGE----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ----Hh----hcccCc----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 10 000000 00112222233334567899999985331 123343333321 234
Q ss_pred CeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 326 SKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 326 s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..||.||...+.... -..+..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 445556655543322 1346788999999999999987665322211 112 245566666654
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.0008 Score=63.84 Aligned_cols=28 Identities=32% Similarity=0.241 Sum_probs=24.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
+.+.|+|++|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999999876554
No 198
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.28 E-value=0.0036 Score=76.37 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=38.4
Q ss_pred CCccchhhHHHHHHHHhccC------C-CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIG------L-PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++|.+..++.+.+.+... . ....++.++|+.|+|||+||+.++..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 46889999999988877531 1 123468899999999999999999876
No 199
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0019 Score=73.25 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
.+-+|+++-.++|.+.+.- ++.+.++++.+|++|+|||.+|+.|+..+..+|- ++ .++...+..+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-Rf---SvGG~tDvAe------- 479 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-RF---SVGGMTDVAE------- 479 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-EE---eccccccHHh-------
Confidence 4579999999999998852 3456789999999999999999999998766653 12 2222222111
Q ss_pred HHHHHHhccccc---ccCcchHHHHHHHhCCCcEEEEEecCCCchh------hHHHhcCCCCC-------------CCCC
Q 037332 269 RILSEILDENIK---IRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ------LDYLAGGLDQF-------------GPGS 326 (1007)
Q Consensus 269 ~l~~~~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~-------------~~gs 326 (1007)
+.+.... .-+..+++.++.. +-..=|+.||.|+.... -.+++..+..- -.=|
T Consensus 480 -----IkGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 480 -----IKGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred -----hcccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 1111111 0012233333332 23455888999864431 12222222100 1136
Q ss_pred eEEE-EeCChhhHhh----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 327 KIIV-TTRDKRVLDN----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 327 ~ili-TtR~~~v~~~----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
+|+. .|-+. +... ...-+++++.+...+|-.++-.++.
T Consensus 554 kVLFicTAN~-idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANV-IDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccc-cccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6653 33322 1111 1122688999999998877776665
No 200
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.23 E-value=0.0019 Score=69.32 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=56.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+. ...++..+...... ......+.. +.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~-------~~~~~~l~~-l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISD-------GSVKEKIDA-VK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhc-------CcHHHHHHH-hc
Confidence 467899999999999999999998765433355554 33444444433321 112233333 22
Q ss_pred CCcEEEEEecCC--CchhhH--HHhcCC-C-CCCCCCeEEEEeC
Q 037332 296 QMDVFIVLDDVN--KVGQLD--YLAGGL-D-QFGPGSKIIVTTR 333 (1007)
Q Consensus 296 ~kr~LlVlDdv~--~~~~~~--~l~~~~-~-~~~~gs~iliTtR 333 (1007)
+-=||||||+. ....|. .+...+ . +...+-.+|+||-
T Consensus 217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 34589999994 333343 233322 1 1123455777775
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.015 Score=62.52 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-hhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 296 QMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK-RVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
+++-++|||+++... .-..++..+....+++.+|++|.+. .+.... .-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 455689999997554 3455555554445677777777654 343332 223678999999999988886431 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 372 PEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
. ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2235678999999998665443
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00058 Score=65.31 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCccc-CCCCCCCEEeccCCCCCCCc--hhhCCCCCcCEEEc
Q 037332 841 KSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLL-SGLCSLTELDLKDCGIREIP--QDIGSVFALEKIDL 917 (1007)
Q Consensus 841 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L 917 (1007)
.+...+++++|.+..++ .+.+++.|.+|.+.+|++..+...+ ..+++|+.|.|.+|.|.++. .-+..+|.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34566777777777554 2566777777777777766654433 34567777777777776542 23456777777777
Q ss_pred cCCCCccchh----hhcCCCCCCEEeeecC
Q 037332 918 SGNNFETLPA----SMKQLSRLRYLYLINC 943 (1007)
Q Consensus 918 ~~n~l~~lp~----~~~~l~~L~~L~L~~n 943 (1007)
-+|.++.-+. .+..+|+|+.||..+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777664432 3566777777777654
No 203
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.018 Score=57.78 Aligned_cols=179 Identities=14% Similarity=0.092 Sum_probs=94.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc---CcchHHHH
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR---TPNLSECI 290 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~l 290 (1007)
.+.+++.++|.-|.|||.++++....+-+.--+.+.+. ..... ...+...+...+...+.... .+.....+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s-~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLS-DATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccchh-HHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 34569999999999999999965554432221121221 11112 45566666666655221111 11222333
Q ss_pred HHHh-CCCc-EEEEEecCCCch--hhHHHh--cCC-CCC-CCCCeEEEE---eCCh---hhHhhcC-cccE-EEcCCCCh
Q 037332 291 KKRL-RQMD-VFIVLDDVNKVG--QLDYLA--GGL-DQF-GPGSKIIVT---TRDK---RVLDNFG-VSNI-YKVNGLEN 354 (1007)
Q Consensus 291 ~~~l-~~kr-~LlVlDdv~~~~--~~~~l~--~~~-~~~-~~gs~iliT---tR~~---~v~~~~~-~~~~-~~l~~L~~ 354 (1007)
.+.. +++| +.+++||..+.. .++.+. ..+ ..+ ++-+.+++- -|.+ .+....+ ...+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 5677 999999985432 233322 111 111 121223321 1111 0111111 1123 89999999
Q ss_pred hHHHHHHhhhhcCCCCCChh-HHHHHHHHHHHhCCCchHHHHHhh
Q 037332 355 HEAFKLFCYYAFKGNHGPED-LLVLSERVLYYANGNPLALRVLGS 398 (1007)
Q Consensus 355 ~~a~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~g~PLal~~~~~ 398 (1007)
++...++..+.-+...+.+. ..+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99888887776443322222 245567788889999988877654
No 204
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.17 E-value=0.0072 Score=64.50 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=26.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+.++|||++|.|||.+|++++.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346899999999999999999999987554
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.0049 Score=61.25 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=97.3
Q ss_pred CCCccchhhHHHH---HHHHhccC----CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHH
Q 037332 192 SDGLVGLNSRVEQ---IKSLLCIG----LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 192 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 264 (1007)
-+++||.+....+ |++.|... +-..+.|..+|++|.|||.+|+++++..+-.|- ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l----~v------------- 182 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL----LV------------- 182 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE----Ee-------------
Confidence 3578888876653 44555432 245789999999999999999999997543321 11
Q ss_pred HHHHHHHHHHhcccccccCcchHHHHHHH-hCCCcEEEEEecCCCch--------------hhHHHhcCCCCC--CCCCe
Q 037332 265 RLRERILSEILDENIKIRTPNLSECIKKR-LRQMDVFIVLDDVNKVG--------------QLDYLAGGLDQF--GPGSK 327 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~gs~ 327 (1007)
+..+-|...+++. ...+..+.++ -+.-++.+.+|.++... .+.+++..+... +.|..
T Consensus 183 kat~liGehVGdg------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 183 KATELIGEHVGDG------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred chHHHHHHHhhhH------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 0011111111111 1112222222 23467899999875332 245555555422 34555
Q ss_pred EEEEeCChhhHhhc---CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 328 IIVTTRDKRVLDNF---GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 328 iliTtR~~~v~~~~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.|-.|-+.+.+... ...+-++...-+++|-.+++..++-.-.-+... -.+.++++.+|..
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCCC
Confidence 55566655554431 234567777788899999998887433222211 1355666666653
No 206
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.16 E-value=0.00048 Score=66.04 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=55.8
Q ss_pred cEEEcCccccccC-chhHHHHHHHHhC-CCceEecC-CCCC--CCcchHHHHHHhhccceeEEEecCcc
Q 037332 20 DVFLSFRGEDTRY-NFTSHLFAALSRK-KIKTFTDE-ELKR--GDEISPAILNAIIGSKILVIIFSKNY 83 (1007)
Q Consensus 20 dvfis~~~~d~~~-~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~s~~~ 83 (1007)
-|||||+++...+ .+|..|++.|++. |+.|.+|. +... +..+..++.++++++..+|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 4999999866533 7899999999999 99999998 7643 77899999999999999999999765
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.15 E-value=0.0013 Score=68.19 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=59.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccc-----ccccC---c---
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDEN-----IKIRT---P--- 284 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~--- 284 (1007)
-+-++|.|.+|.||||||+.+++.++.+|+..+++..+++-..+ +.++.+.+...-.... ...+. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45789999999999999999999998888888888776654333 5555555543211000 00000 0
Q ss_pred --chHHHHHHHh--C-CCcEEEEEecCCCchh
Q 037332 285 --NLSECIKKRL--R-QMDVFIVLDDVNKVGQ 311 (1007)
Q Consensus 285 --~~~~~l~~~l--~-~kr~LlVlDdv~~~~~ 311 (1007)
...-.+.+++ + ++++|+|+||+....+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 1112344555 3 8899999999854433
No 208
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.0014 Score=69.02 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=28.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVA 251 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 251 (1007)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987655 33345554
No 209
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.0007 Score=64.80 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccc-cccccceeeccCCcCC--CCCCCCCCCCCCcEEec
Q 037332 586 PEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKK-EAFKLKSIDLRYSQYL--TRIPEPSEIPNLEKINL 662 (1007)
Q Consensus 586 ~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~L 662 (1007)
....-.+++++|.+..++..-.++.|..|.|.+|+|+.+-..+. .+++|+.|.|.+|++. +.+..+..++.|++|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34566788888888888877788899999999999998876664 5677999999988763 34445678889999988
Q ss_pred ccccccCCC---CcccccCCCccEEEecCC
Q 037332 663 WNCTNLAYI---PCNIQNFINLGVLCFRGC 689 (1007)
Q Consensus 663 ~~~~~~~~l---~~~~~~l~~L~~L~l~~~ 689 (1007)
-+|+....- ..-+..+++|+.||+++-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 887643321 124567888888888654
No 210
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.022 Score=56.26 Aligned_cols=143 Identities=20% Similarity=0.345 Sum_probs=81.4
Q ss_pred chhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 197 GLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 197 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
|.++++++|.+.+.. +-.+.+-|.++|++|.|||-||++|++.. .||+..++.. .-
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgs-------el 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGS-------EL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechH-------HH
Confidence 346666666655432 12456788999999999999999999753 3444434321 11
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHh----CCCcEEEEEecCCCchh----------------hHHHhcCCCCC--C
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRL----RQMDVFIVLDDVNKVGQ----------------LDYLAGGLDQF--G 323 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~--~ 323 (1007)
+++-+ .+...++++.+ .+-+-.|..|.+++... .-+++..+..| .
T Consensus 218 vqk~i-------------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 218 VQKYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHh-------------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 11111 11122222221 34567888888754321 11233344333 2
Q ss_pred CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 324 PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
..-+||+.|..-+++.. -..++.++.++-+++.-.+++.-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 45678877765554433 2356778888888887777776554
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.14 E-value=0.019 Score=70.68 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 193 DGLVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
...+|.+..+++|.+++.. +.....++.++|++|+|||++|+.++..+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578999999998886632 222345899999999999999999999875444
No 212
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.12 E-value=0.017 Score=70.17 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=41.4
Q ss_pred CCccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 193 DGLVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
...+|.++-+++|.++|.. +.....++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999999999988853 112346899999999999999999998765443
No 213
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.11 E-value=0.0097 Score=62.09 Aligned_cols=197 Identities=15% Similarity=0.094 Sum_probs=105.0
Q ss_pred CCccchhhH---HHHHHHHhccCC-CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc-----eEEEEecchhhhccCcH
Q 037332 193 DGLVGLNSR---VEQIKSLLCIGL-PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG-----KCFVANVREESEKEGVL 263 (1007)
Q Consensus 193 ~~~vGr~~~---~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-----~~~~~~~~~~~~~~~~~ 263 (1007)
+.+||-... ++.+.+++.... ...+-+.|+|.+|.|||+++++++...-..++. -+++. +.....+ .
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~-~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPD-E 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCC-h
Confidence 355555433 344555554432 345679999999999999999999865333321 12222 1233444 7
Q ss_pred HHHHHHHHHHHhccccccc-CcchHHHHHHHhCC-CcEEEEEecCCCch-----hhHHHhcCCCCCC---CCCeEEEEeC
Q 037332 264 VRLRERILSEILDENIKIR-TPNLSECIKKRLRQ-MDVFIVLDDVNKVG-----QLDYLAGGLDQFG---PGSKIIVTTR 333 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~-kr~LlVlDdv~~~~-----~~~~l~~~~~~~~---~gs~iliTtR 333 (1007)
..+...|+.++........ ...+...+.+.++. +--+||+|++.+.- +-..++..+...+ .=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 7888888888876654332 22334444455543 34489999996531 1222222222112 2345566665
Q ss_pred ChhhHhhcC-----cccEEEcCCCChh-HHHHHHhhhhc--C-CCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 334 DKRVLDNFG-----VSNIYKVNGLENH-EAFKLFCYYAF--K-GNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 334 ~~~v~~~~~-----~~~~~~l~~L~~~-~a~~Lf~~~a~--~-~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
+..-+-..+ --..+.++....+ |...|+..... . .....-...+++..|...++|+.--+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 442221110 1134566655544 34445432211 1 11111234678899999999986433
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.017 Score=62.28 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-hhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 296 QMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK-RVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
+++=++|+|+++... ....++..+....+++.+|++|.+. .+.... .....+.+.+++++++.+.+..... ..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~~ 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---AE 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---cC
Confidence 455688899997554 4666666665556677777777665 344332 2236899999999999988876541 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHH
Q 037332 372 PEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLal 393 (1007)
...+...+..++|.|+..
T Consensus 183 ----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ----hHHHHHHHHHcCCCHHHH
Confidence 112556778899999643
No 215
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0037 Score=69.62 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=41.6
Q ss_pred CCCccchhhHHHHHHHHhccC----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 192 SDGLVGLNSRVEQIKSLLCIG----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
..++=|.++.+.++.+++..- -...+-|.++|++|.|||.||++++.++.-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 356889999999998877431 12356788999999999999999999865443
No 216
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.062 Score=57.75 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=60.6
Q ss_pred CCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-hhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 296 QMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK-RVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
+++=++|+|+++... ....++..+....+++.+|++|.+. .+.... .....+.+.+++++++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 345588899987553 4666766665555677777666654 444432 234688999999999998886532 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 372 PEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
. .+..+++.++|.|+....+
T Consensus 182 -~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999999876544
No 217
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.04 E-value=0.0015 Score=72.25 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--ccCceEEE
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--EFEGKCFV 250 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~ 250 (1007)
.++++.+..++.+...|... +.|.++|++|+|||++|+++++.+.. .+..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 45788888999999888643 47888999999999999999997643 34444444
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.013 Score=61.96 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 202 VEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 202 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++++..++..+ +-|.++|++|+|||++|++++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444332 356689999999999999999855
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.03 E-value=0.01 Score=73.28 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCccchhhHHHHHHHHhccC------CC-CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG------LP-VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..++|.+..++.+...+... .+ ...++.++|+.|+|||++|+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999888877531 11 1347889999999999999999986643
No 220
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.02 E-value=0.0045 Score=60.43 Aligned_cols=48 Identities=23% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
-.+.||-++.++.+.-.-. +++..-+.|.||+|+||||-+..+++.+-
T Consensus 26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3568999998888776543 34577888999999999999999999753
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.011 Score=67.14 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=80.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
..-|.|.|..|+|||+||+++++.+.+.- .+++..+.........+.++++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 45788999999999999999999876432 333333322111111133333332 334555666
Q ss_pred CCcEEEEEecCCCch--------hh-------HHHh-cCCCC-CCCCCe--EEEEeCChhhHhh-----cCcccEEEcCC
Q 037332 296 QMDVFIVLDDVNKVG--------QL-------DYLA-GGLDQ-FGPGSK--IIVTTRDKRVLDN-----FGVSNIYKVNG 351 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~--------~~-------~~l~-~~~~~-~~~gs~--iliTtR~~~v~~~-----~~~~~~~~l~~ 351 (1007)
..+-+|||||++-.. +| ..+. ..... ...+.+ +|.|.....-... .-...+..+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 778899999985321 11 1111 00011 123444 3334333222111 11234678888
Q ss_pred CChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 352 LENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 352 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
+..++-.++++... ........ .+...-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhhhh-hHHHHHHHHhcCCc
Confidence 88888777776543 22211111 12223377778775
No 222
>PHA00729 NTP-binding motif containing protein
Probab=97.01 E-value=0.0031 Score=63.34 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+...|.|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998753
No 223
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.014 Score=63.72 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred Cccc-hhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc---------------------cCceEEEE
Q 037332 194 GLVG-LNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE---------------------FEGKCFVA 251 (1007)
Q Consensus 194 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~ 251 (1007)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+.+.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 555667777776543 234677899999999999999998865221 11111111
Q ss_pred ecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH----hCCCcEEEEEecCCCch--hhHHHhcCCCCCCCC
Q 037332 252 NVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR----LRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPG 325 (1007)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~g 325 (1007)
.. ..... + ++..+.+... ..+.+-++|+|+++... ....++..+....++
T Consensus 85 ~~---~~~i~-i--------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 85 PD---GQSIK-K--------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred cc---cccCC-H--------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 00 00000 1 1111111110 22445578999986543 356666666655677
Q ss_pred CeEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhh
Q 037332 326 SKIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 326 s~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
+.+|++|.+.. +... ......+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77777776543 3222 122468999999999998888643
No 224
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.99 E-value=0.0037 Score=76.85 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCccchhhHHHHHHHHhccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|-+..++.+.+.+... .....++.++|+.|+|||.+|++++..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 46899999999998877421 1234578999999999999999998876443
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.022 Score=62.52 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
.....+.+.|++|+|||+||..++.. ..|+.+-.+. . .+--+ +.+-.+. ..+...+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---p-e~miG-~sEsaKc--------------~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---P-EDMIG-LSESAKC--------------AHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---h-HHccC-ccHHHHH--------------HHHHHHHHHh
Confidence 34667889999999999999999875 5677543332 1 00111 1110000 1112233333
Q ss_pred hCCCcEEEEEecCCCchhhHH------------Hh---cCCCCCCCCCeEEEEeCChhhHhhcCc----ccEEEcCCCCh
Q 037332 294 LRQMDVFIVLDDVNKVGQLDY------------LA---GGLDQFGPGSKIIVTTRDKRVLDNFGV----SNIYKVNGLEN 354 (1007)
Q Consensus 294 l~~kr~LlVlDdv~~~~~~~~------------l~---~~~~~~~~gs~iliTtR~~~v~~~~~~----~~~~~l~~L~~ 354 (1007)
-+..=-.||+||++..-+|-. ++ ...|..+..--|+-||-...++..|+. ...|+|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 345557899999976655432 22 222222222234457777788887764 45789999988
Q ss_pred -hHHHHHHhhh
Q 037332 355 -HEAFKLFCYY 364 (1007)
Q Consensus 355 -~~a~~Lf~~~ 364 (1007)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6677766544
No 226
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.0031 Score=68.08 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR 282 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 282 (1007)
++++.+..- +.-+-++|+|.+|+|||||++.+++.+..+. +..+++..+.+.... +.++.+.+...+........
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~E---V~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEE---VTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCC---HHHHHHHHhhhEEeecCCCC
Confidence 355655432 2234568999999999999999999876654 343455444433222 66777777665443221111
Q ss_pred Ccc------hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 283 TPN------LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 283 ~~~------~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
... ....+.+++ ++++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 011 111222222 589999999998544
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.94 E-value=0.032 Score=63.79 Aligned_cols=167 Identities=15% Similarity=0.173 Sum_probs=102.3
Q ss_pred CCCCCccchhhHHHHHHHHhcc---CCCCeEEEEEEecCCCcHHHHHHHHHHhhh--------cccCceEEEEecchhhh
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCI---GLPVFRIVGIWGMGGIGKTTIAGAIFNQNF--------REFEGKCFVANVREESE 258 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--------~~f~~~~~~~~~~~~~~ 258 (1007)
..+..+-+|+.+..+|...+.. ..+..+.+-|.|.+|.|||..+..|.+.++ ..|+ ++.+...
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm----- 466 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGL----- 466 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcce-----
Confidence 3567788999999999988753 223455899999999999999999999653 1244 2333222
Q ss_pred ccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC-----CCcEEEEEecCCCchh--hHHHhcCCCCC-CCCCeEEE
Q 037332 259 KEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR-----QMDVFIVLDDVNKVGQ--LDYLAGGLDQF-GPGSKIIV 330 (1007)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~ili 330 (1007)
......++...|..++.++.... ....+.+..+.. .+.+++++|+++..-. -+-+...+.|. .++|+++|
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 22226778888888887765543 334455555553 3568888998854432 22333334443 47888776
Q ss_pred EeCCh-----------hhHhhcCcccEEEcCCCChhHHHHHHhhhh
Q 037332 331 TTRDK-----------RVLDNFGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 331 TtR~~-----------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
-+=.. .+...+|. ..+..++.+.++-.+....+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EEecccccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhh
Confidence 54211 01111121 345566666666666665554
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.02 Score=62.37 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=94.4
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc---------------------cCceEEEEecchhhhc
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE---------------------FEGKCFVANVREESEK 259 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~ 259 (1007)
.-+++.+.+..+ .-.+...+.|+.|+||+++|.+++..+--. .+...++.... .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~-- 84 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK--G-- 84 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc--c--
Confidence 344555655433 234678899999999999999999865211 11111111000 0
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh-----CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEe
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRL-----RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTT 332 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt 332 (1007)
..... -+.++.+.+.+ .+++=++|+|+++... ....++..+....+++.+|.+|
T Consensus 85 ------------------~~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 85 ------------------KSSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred ------------------cccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 00000 11112222222 2456688999987543 4566666665556677777777
Q ss_pred CChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 333 RDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 333 R~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
.+.+ +... ......+.+.+++++++.+.+.... . .+ .+.+..++..++|.|....
T Consensus 146 ~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 146 REPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T-MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHHHH
Confidence 6653 4433 2223578999999999988876432 1 11 2236678899999996543
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.003 Score=65.92 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=45.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
+..-+.++|.+|+|||.||.++.+++...--.+.|+. ..+++.++...... ......+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~-------~~~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDE-------GRLEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhc-------CchHHHHHHHh
Confidence 4567889999999999999999999873323344443 44555555444332 11222233322
Q ss_pred CCCcEEEEEecCC
Q 037332 295 RQMDVFIVLDDVN 307 (1007)
Q Consensus 295 ~~kr~LlVlDdv~ 307 (1007)
. +-=||||||+-
T Consensus 166 ~-~~dlLIiDDlG 177 (254)
T COG1484 166 K-KVDLLIIDDIG 177 (254)
T ss_pred h-cCCEEEEeccc
Confidence 1 22389999984
No 230
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.007 Score=68.55 Aligned_cols=171 Identities=20% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchh-hhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREE-SEKE 260 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 260 (1007)
++.=|.++-+.+|.+.... +-...+-|..+|++|.|||++|+++++.-+-.|-.+ . ..+. +.-.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k-gpEL~sk~v 509 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K-GPELFSKYV 509 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c-CHHHHHHhc
Confidence 3444577777777655432 224567899999999999999999999866555321 0 0000 0000
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCCCCCCCCCe
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGLDQFGPGSK 327 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gs~ 327 (1007)
+.-....+++ +++.-+--+.++.||.++.... +..++..++.......
T Consensus 510 GeSEr~ir~i-------------------F~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 510 GESERAIREV-------------------FRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred CchHHHHHHH-------------------HHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 0011122222 2222223457888887753321 3444444443333333
Q ss_pred EEE---EeCChhhHhh-c---CcccEEEcCCCChhHHHHHHhhhhcCCCCCCh-hHHHHHHHHHHHhCCCc
Q 037332 328 IIV---TTRDKRVLDN-F---GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPE-DLLVLSERVLYYANGNP 390 (1007)
Q Consensus 328 ili---TtR~~~v~~~-~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~g~P 390 (1007)
|+| |-|...+-.. + ..++.+.++.-+.+...++|..++-+..-.+. ++ .+++++..|.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl----~~La~~T~g~S 637 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL----EELAQATEGYS 637 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH----HHHHHHhccCC
Confidence 433 2333322221 2 25678888888888888999988854333222 23 44555555554
No 231
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0057 Score=72.06 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCccchhhHHHHHHHHhccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
..++|-+..++.+.+.+... .....+....|+.|+|||.||++++..+.+.=+..+-+ ++++...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~E------- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYME------- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHH-------
Confidence 56899999999998887532 12356788899999999999999999875433333333 3333222
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCcE-EEEEecCC--CchhhHHHhcCCCC
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMDV-FIVLDDVN--KVGQLDYLAGGLDQ 321 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~--~~~~~~~l~~~~~~ 321 (1007)
+.-.+.+.+.++.-..-+--..+-+..+.++| +|.||+|+ +++..+-|+..+..
T Consensus 563 --kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22233344443332212224556677777877 77789996 44557777766654
No 232
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.0011 Score=67.40 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
.++|+|..|+||||+++.+.......|.....+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 577999999999999999999998999655444
No 233
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.031 Score=65.53 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=102.8
Q ss_pred CCCCccchhhHHHHHHHHh---ccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 191 DSDGLVGLNSRVEQIKSLL---CIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L---~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
...++.|.++..++|++.. ... ..-.+-|.++|++|.|||-||++++-.-. +=|+......
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSE---- 379 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSE---- 379 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechHH----
Confidence 3467889888777766644 322 22357788999999999999999987532 2233221111
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-----------------hhHHHhcCCCCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-----------------QLDYLAGGLDQFG 323 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~~ 323 (1007)
+.+...+.. .....+.....=...++.+.+|+++... .+..++...+.+.
T Consensus 380 ---------FvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 380 ---------FVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ---------HHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 000011100 0112222333334566788888774321 1455555555444
Q ss_pred CCCeE--EEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 324 PGSKI--IVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 324 ~gs~i--liTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
.+..| +-+|...++... -..++.+.++.-+.....++|..|+-.-... .+..++++ ++...-|.+=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 43333 335555544433 1346788899889999999999888543332 34455556 88888888744
No 234
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.87 E-value=0.013 Score=65.77 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=25.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|.++|.+|+||||.|.+++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.87 E-value=0.0056 Score=75.66 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CCccchhhHHHHHHHHhccC------CC-CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIG------LP-VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
..++|-+..++.+.+.+... .. ...++.++|+.|+|||+||+.+++.+...-...+ ..++.+...... +..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~-~~d~s~~~~~~~-~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMI-RLDMSEYMEKHT-VSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceE-EEEchhcccccc-HHH
Confidence 56899999999998877521 11 2346778999999999999999987643322222 222322222211 111
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCc-EEEEEecCCCch--hhHHHhcCCC
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMD-VFIVLDDVNKVG--QLDYLAGGLD 320 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~--~~~~l~~~~~ 320 (1007)
+.+........+....+.+.++.++ .+++||+++... .++.++..+.
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1111111110111223445554454 588999997543 3566655544
No 236
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0032 Score=63.39 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=64.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
.+|.|+|+.|.||||++..+...+.......++...- ..... ... ...+. .............+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~---~~E~~-~~~-~~~~i---~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED---PIEFV-HES-KRSLI---NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC---Ccccc-ccC-cccee---eecccCCCccCHHHHHHHHhcC
Confidence 4789999999999999999888765554444443211 00000 000 00000 0000011123456778888877
Q ss_pred CcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhH
Q 037332 297 MDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVL 338 (1007)
Q Consensus 297 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~ 338 (1007)
..=.+++|++.+.+.+....... ..|-.++.|+-...+.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 78899999998887766544332 3455677777665544
No 237
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.86 E-value=0.004 Score=77.15 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=40.2
Q ss_pred CCccchhhHHHHHHHHhccC------CC-CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG------LP-VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|.+..++.+.+.+... .. ...++.++|+.|+|||++|+.+...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999998888542 11 24578899999999999999999876443
No 238
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.85 E-value=0.24 Score=54.32 Aligned_cols=101 Identities=12% Similarity=0.025 Sum_probs=66.0
Q ss_pred cEEEEEecCCCc-----------hhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc------CcccEEEcCCCChhHHHHH
Q 037332 298 DVFIVLDDVNKV-----------GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF------GVSNIYKVNGLENHEAFKL 360 (1007)
Q Consensus 298 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~------~~~~~~~l~~L~~~~a~~L 360 (1007)
|=+||||+.... .+|...+.. .+=.+||++|-+....... .+-+.+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998322 224433322 3556899999877554432 2335778999999999999
Q ss_pred HhhhhcCCCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 037332 361 FCYYAFKGNHG-------------P-----EDLLVLSERVLYYANGNPLALRVLGSFLHQ 402 (1007)
Q Consensus 361 f~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 402 (1007)
...+.-..... . .....-....++.+||--.=+..+++.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 98887432110 0 123334466778888888888888888864
No 239
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00072 Score=67.76 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCC---CCcCCcccCCCCCCCEEeccCCCCCCC--chhhCCCCCcC
Q 037332 839 SLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCR---NLVLPTLLSGLCSLTELDLKDCGIREI--PQDIGSVFALE 913 (1007)
Q Consensus 839 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~ 913 (1007)
.+..|+.|++.+..++.+. .+..+++|++|.++.|. ...++.....+|+|++|++++|++..+ -..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3344444444444444332 12334555555555552 122222223335555555555554421 11123344455
Q ss_pred EEEccCCCCc
Q 037332 914 KIDLSGNNFE 923 (1007)
Q Consensus 914 ~L~L~~n~l~ 923 (1007)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555433
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.78 E-value=0.0012 Score=70.90 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=41.6
Q ss_pred CccchhhHHHHHHHHhccC----CCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 194 GLVGLNSRVEQIKSLLCIG----LPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.++|.++.++++++++... ....++++++|++|+||||||+++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988542 234689999999999999999999997643
No 241
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.78 E-value=0.016 Score=60.17 Aligned_cols=172 Identities=19% Similarity=0.144 Sum_probs=95.7
Q ss_pred CCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhh--hccCcHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREES--EKEGVLVRL 266 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l 266 (1007)
+...++|-.++..++.+++... .++..-|.|+|+.|.|||+|......+ .+.|.....+......- +... +..+
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~a-l~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIA-LKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHH-HHHH
Confidence 3456999999999999888542 134456889999999999999887776 34444444443332221 1122 5666
Q ss_pred HHHHHHHHhcccc-cccCcchHHHHHHHhCC------CcEEEEEecCCCchh------hHHHhcC-CCCCCCCCeEEEEe
Q 037332 267 RERILSEILDENI-KIRTPNLSECIKKRLRQ------MDVFIVLDDVNKVGQ------LDYLAGG-LDQFGPGSKIIVTT 332 (1007)
Q Consensus 267 ~~~l~~~~~~~~~-~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~------~~~l~~~-~~~~~~gs~iliTt 332 (1007)
.+++..++..... .....+-...+-+.|+. -++.+|+|.++-... +-.+... -....|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6666555443211 11122333444444432 358999988764432 2222211 11235667788999
Q ss_pred CChhh-------HhhcCcccEEEcCCCChhHHHHHHhhh
Q 037332 333 RDKRV-------LDNFGVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 333 R~~~v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
|-.-. -.......++-++.++-++-.+++++-
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 85422 111222234555556656555555444
No 242
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.0035 Score=62.25 Aligned_cols=127 Identities=26% Similarity=0.295 Sum_probs=58.1
Q ss_pred hhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh--hcccCceEEEEecchhhhccCcH-HHHHHH------
Q 037332 199 NSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN--FREFEGKCFVANVREESEKEGVL-VRLRER------ 269 (1007)
Q Consensus 199 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~-~~l~~~------ 269 (1007)
..+-....++|. ...+|.+.|++|.|||.||.+.+.+. ..+|+..++....-+.....+.+ ..+-+.
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 344445555554 34589999999999999999988653 45677666664332211111100 011111
Q ss_pred -HHHHHhcccccccCcchHHHHH---------HHhCCC---cEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCC
Q 037332 270 -ILSEILDENIKIRTPNLSECIK---------KRLRQM---DVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 270 -l~~~~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
+...+..-. ........+. .+++++ ..++|+|++.+. .++..+... .+.||++|++=-.
T Consensus 82 p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 82 PIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 111111100 0011222221 233443 469999999654 457766654 4789999998654
Q ss_pred h
Q 037332 335 K 335 (1007)
Q Consensus 335 ~ 335 (1007)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 243
>PRK08118 topology modulation protein; Reviewed
Probab=96.76 E-value=0.0034 Score=61.10 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=25.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc---ccCceEE
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR---EFEGKCF 249 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 249 (1007)
-|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997543 3554443
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0087 Score=72.09 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCccchhhHHHHHHHHhccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|-+..++.|.+.+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999998887521 11245788999999999999999988763
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.74 E-value=0.02 Score=55.44 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--------------------ccCceEEEEecchh
Q 037332 197 GLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--------------------EFEGKCFVANVREE 256 (1007)
Q Consensus 197 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~~~~~~~~~ 256 (1007)
|-+..++.+.+++..+ .-...+.++|+.|+||+++|.++++.+-. .+....++... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4456667777776543 23457889999999999999999986421 12223333210 00
Q ss_pred hhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCC
Q 037332 257 SEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
..... +.++. .+...+.... ..+++=++|+||++.. +....++..+.....++++|++|++
T Consensus 79 ~~~i~-i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIK-IDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBS-HHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhh-HHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 00011 11111 2221111110 1234568999999754 4466666655555678899888887
Q ss_pred hhh-Hhh-cCcccEEEcCCCC
Q 037332 335 KRV-LDN-FGVSNIYKVNGLE 353 (1007)
Q Consensus 335 ~~v-~~~-~~~~~~~~l~~L~ 353 (1007)
..- ... ......+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 753 222 1223466666553
No 246
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0096 Score=61.29 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh----hcccCceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN----FREFEGKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~ 250 (1007)
-|+|.++|++|.|||+|++++++++ .+.|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 4899999999999999999999964 3445544444
No 247
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.67 E-value=0.074 Score=58.60 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhccCC-CCeEEEEEEecCCCcHHHHHHHHHHhhhcc--cCceEEEEecchhhhccCcHHHHHHHHHHH
Q 037332 199 NSRVEQIKSLLCIGL-PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE--FEGKCFVANVREESEKEGVLVRLRERILSE 273 (1007)
Q Consensus 199 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1007)
+.-.+.|.+.+...+ ....+|+|.|.=|+|||++.+.+.+.+... -...+...+.+......+....++..+..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 344566667776543 567899999999999999999999988776 222333333333333233344444444443
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=96.66 E-value=0.017 Score=62.44 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|+++|++|+||||++.+++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998876554
No 249
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.64 E-value=0.066 Score=54.18 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc------ccCceEEEEecch-----------
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR------EFEGKCFVANVRE----------- 255 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~----------- 255 (1007)
+.+.++++....+.+... .++..-..++|+.|.||-|.+..+.+++-+ +-+...|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 457778877777777654 345677889999999999999998887522 2233334332111
Q ss_pred -----hhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcE-EEEEecCCCc--hhhHHHhcCCCCCCCCCe
Q 037332 256 -----ESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV-FIVLDDVNKV--GQLDYLAGGLDQFGPGSK 327 (1007)
Q Consensus 256 -----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 327 (1007)
.++.-.--+.+..+++.++....... .-.++.| ++|+-.++.. +.-.++..........+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-----------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-----------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-----------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 00000001122223333222221110 0012333 5666666533 333444444444456778
Q ss_pred EEEE----eCChhhHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhh-hc
Q 037332 328 IIVT----TRDKRVLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRVLGSF-LH 401 (1007)
Q Consensus 328 iliT----tR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~-l~ 401 (1007)
+|+. ||--+.... ..-.+++.+.+++|....+++.+-+..-.. ..+++.+|+++++|+- -|+-.+-.. +.
T Consensus 160 lIl~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred EEEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8774 333222221 123679999999999999988874443322 2678999999999974 222222111 11
Q ss_pred C-----C----CHHHHHHHHHHhh
Q 037332 402 Q-----K----NKLDWEIALENLK 416 (1007)
Q Consensus 402 ~-----~----~~~~w~~~l~~l~ 416 (1007)
+ + +..+|+.++.+..
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHH
Confidence 1 1 3468998887754
No 250
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0021 Score=59.33 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=28.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEE
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFV 250 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 250 (1007)
.-|+|.|++|+||||+++++.+.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 468899999999999999999988766 6655444
No 251
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.027 Score=55.73 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCccchhhHHHHHHHHh---ccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 193 DGLVGLNSRVEQIKSLL---CIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
..++|.|...+.+.+-- ..+ -...-|.+||--|.||+.|++++.+.+.++.-.-+=|. ..+ +..+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~-------k~d-l~~L--- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD-------KED-LATL--- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc-------HHH-HhhH---
Confidence 56899999999887632 222 23456789999999999999999999877766422221 001 1110
Q ss_pred HHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCC---CchhhHHHhcCCCCC---CCCCeEEEEeCCh
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVN---KVGQLDYLAGGLDQF---GPGSKIIVTTRDK 335 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~---~~~~~~~l~~~~~~~---~~gs~iliTtR~~ 335 (1007)
..+.+.++. +.+|+.|..||.. ..+..+.++..+..+ .|.-.++..|.++
T Consensus 128 --------------p~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 128 --------------PDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------------HHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 112222222 3678999999983 333466666555422 2334455555444
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0055 Score=60.53 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
...+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887777666663
No 253
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0019 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 254
>PRK07261 topology modulation protein; Provisional
Probab=96.59 E-value=0.0082 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 255
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.34 Score=52.77 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCC-hhhHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCC
Q 037332 296 QMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRD-KRVLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHG 371 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 371 (1007)
+++=++|+|+++.. +....++..+....+++.+|.+|.+ ..+.... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34558889998754 4467777666655677766666555 4444332 223689999999999998887642 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 372 PEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 372 ~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
.+ ...++..++|.|.....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577789999755444
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.55 E-value=0.0047 Score=60.18 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987765444445544
No 257
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.55 E-value=0.023 Score=53.96 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccc------c--ccc------
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDEN------I--KIR------ 282 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~--~~~------ 282 (1007)
..|-|++..|.||||+|...+-+...+=..+.++--+.. ....+ -...++.+ ..+.-.. . ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~~~g-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GWKYG-ELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CCccC-HHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467788888999999999998876544333344322221 11222 22233332 0000000 0 000
Q ss_pred CcchHHHHHHHhCCCc-EEEEEecCCCc-----hhhHHHhcCCCCCCCCCeEEEEeCChh
Q 037332 283 TPNLSECIKKRLRQMD-VFIVLDDVNKV-----GQLDYLAGGLDQFGPGSKIIVTTRDKR 336 (1007)
Q Consensus 283 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~~ 336 (1007)
..+..+..++.+.... =|+|||++-.. -..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 0111233444454444 49999998422 123333333333346778999999874
No 258
>PRK04132 replication factor C small subunit; Provisional
Probab=96.53 E-value=0.051 Score=65.75 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=88.4
Q ss_pred e--cCCCcHHHHHHHHHHhhh-cccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcE
Q 037332 223 G--MGGIGKTTIAGAIFNQNF-REFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDV 299 (1007)
Q Consensus 223 G--~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 299 (1007)
| +.|+||||+|.++++++- +.+...+.-.+.+ +..+ +..+. ++.......... -..+.-
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNAS---d~rg-id~IR-~iIk~~a~~~~~-------------~~~~~K 632 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGENWRHNFLELNAS---DERG-INVIR-EKVKEFARTKPI-------------GGASFK 632 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCC---Cccc-HHHHH-HHHHHHHhcCCc-------------CCCCCE
Confidence 7 788999999999999863 3333333333332 2122 33222 222221111100 012457
Q ss_pred EEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhH
Q 037332 300 FIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDL 375 (1007)
Q Consensus 300 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~ 375 (1007)
++|||+++... +...|+..+......+++|.+|.+.. +... ......+++.+++.++..+.+.+.+-.... ...
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~ 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELT 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCC
Confidence 99999998664 56667766655556677777666543 2222 122468999999999988887766532211 112
Q ss_pred HHHHHHHHHHhCCCchH
Q 037332 376 LVLSERVLYYANGNPLA 392 (1007)
Q Consensus 376 ~~~~~~i~~~~~g~PLa 392 (1007)
.+....|++.++|.+-.
T Consensus 711 ~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 711 EEGLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 45678899999998843
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.51 E-value=0.025 Score=63.31 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 260
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.48 E-value=0.016 Score=69.40 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=71.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
+-|.++|++|.|||++|+.++......| +...... +.... .+. ........+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~----------~~~~~----~g~----~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSD----------FVEMF----VGV----GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHH----------hHHhh----hcc----cHHHHHHHHHHHHhc
Confidence 4589999999999999999988764433 1111110 10000 000 001122233333345
Q ss_pred CcEEEEEecCCCch----------------hhHHHhcCCCCC--CCCCeEEEEeCChhhHhhc-----CcccEEEcCCCC
Q 037332 297 MDVFIVLDDVNKVG----------------QLDYLAGGLDQF--GPGSKIIVTTRDKRVLDNF-----GVSNIYKVNGLE 353 (1007)
Q Consensus 297 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~iliTtR~~~v~~~~-----~~~~~~~l~~L~ 353 (1007)
.+.+|++|+++... .+..++..+..+ ..+.-||.||..++..... ..++.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 67899999986541 122333333322 2344455577665543321 245788899889
Q ss_pred hhHHHHHHhhhhc
Q 037332 354 NHEAFKLFCYYAF 366 (1007)
Q Consensus 354 ~~~a~~Lf~~~a~ 366 (1007)
.++-.+++..+.-
T Consensus 324 ~~~R~~Il~~~~~ 336 (644)
T PRK10733 324 VRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887763
No 261
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0016 Score=65.34 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=24.6
Q ss_pred CCCCCEEeccCC--CCC-CCchhhCCCCCcCEEEccCCCCccch--hhhcCCCCCCEEeeecCCCC
Q 037332 886 LCSLTELDLKDC--GIR-EIPQDIGSVFALEKIDLSGNNFETLP--ASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 886 l~~L~~L~L~~n--~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~L~~n~~l 946 (1007)
+++|++|.++.| .++ .++.-...+|+|++|++++|++.-+. ..+..+.+|..|++.+|.-.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 344445555444 222 12222233344555555554443110 12334444444444444433
No 262
>PRK10867 signal recognition particle protein; Provisional
Probab=96.46 E-value=0.02 Score=64.24 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|.++|.+|+||||.|.+++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998877655
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.096 Score=57.01 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|+++|++|+||||++.+++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876543
No 264
>PRK06696 uridine kinase; Validated
Probab=96.44 E-value=0.0058 Score=62.91 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhcc-CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 198 LNSRVEQIKSLLCI-GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 198 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
|++.+++|.+.+.. ..+...+|+|.|.+|+||||+|+++...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56666777766643 34567899999999999999999999987543
No 265
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.40 E-value=0.0094 Score=61.64 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
|-++|..+-....++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44455444456689999999999999999999987655555567765
No 266
>PRK07667 uridine kinase; Provisional
Probab=96.39 E-value=0.0068 Score=60.75 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 202 VEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 202 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.+.+.+.+....+...+|+|.|.+|+||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665555566899999999999999999999987543
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.38 E-value=0.023 Score=59.97 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...++++++|++|+||||++.+++..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877554
No 268
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.026 Score=62.20 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=77.3
Q ss_pred CccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC---------------------ceEEEEe
Q 037332 194 GLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE---------------------GKCFVAN 252 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~ 252 (1007)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+..... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 3567777777777777543333345899999999999999999998653221 111111
Q ss_pred cchhhhccC--cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeE
Q 037332 253 VREESEKEG--VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKI 328 (1007)
Q Consensus 253 ~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~i 328 (1007)
.+.... ...+..+++........ ..++.-++++|+++.... -..+...+......+++
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 011111 11222222222111110 024567899999975543 45555555555677888
Q ss_pred EEEeCCh-hhHhhc-CcccEEEcCCC
Q 037332 329 IVTTRDK-RVLDNF-GVSNIYKVNGL 352 (1007)
Q Consensus 329 liTtR~~-~v~~~~-~~~~~~~l~~L 352 (1007)
|++|... .+.... .....+++.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCc
Confidence 8888743 232221 12245666663
No 269
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.1 Score=61.84 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cC-----ceEEEEecchhhhccCcHHH
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FE-----GKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~~ 265 (1007)
-+.++||+++++++++.|.....+- -.++|.+|+|||++|.-++.++... -+ ..++-.++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g----------- 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG----------- 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-----------
Confidence 4579999999999999997654332 2367999999999999999986432 22 122222111
Q ss_pred HHHHHHHHHhcccccccCcc-hHHHHHHHhCCCcEEEEEecCCC-----------chhhHHHhcCCCCCCCCCeEE-EEe
Q 037332 266 LRERILSEILDENIKIRTPN-LSECIKKRLRQMDVFIVLDDVNK-----------VGQLDYLAGGLDQFGPGSKII-VTT 332 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~il-iTt 332 (1007)
.-+.+.......++ +...+.+.-+.+++.|.+|.+.. .+.-.-+++++..+ . -++| .||
T Consensus 236 ------~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-e-L~~IGATT 307 (786)
T COG0542 236 ------SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-E-LRCIGATT 307 (786)
T ss_pred ------HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-C-eEEEEecc
Confidence 11112222222122 23333333345589999998732 22233344444321 1 2344 455
Q ss_pred CChhhHhhc-------CcccEEEcCCCChhHHHHHHhhh
Q 037332 333 RDKRVLDNF-------GVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 333 R~~~v~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
-++.- ... ..-+.+.|+.-+.+++.+.+...
T Consensus 308 ~~EYR-k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYR-KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHH-HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44321 111 11257788889999988887644
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.024 Score=58.32 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.|-++|..+-...+++.|+|.+|+||||+|.+++.....+-..++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344555444456789999999999999999999987655444455664
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.30 E-value=0.015 Score=59.31 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=34.4
Q ss_pred HhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEe
Q 037332 208 LLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVAN 252 (1007)
Q Consensus 208 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 252 (1007)
+|..+-...+++.|+|.+|+|||++|..++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344444567899999999999999999998876555556777763
No 272
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0015 Score=61.67 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.++|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.021 Score=66.77 Aligned_cols=151 Identities=23% Similarity=0.219 Sum_probs=85.1
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh-cc
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE-KE 260 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 260 (1007)
....|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-....- .... ..
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcccc
Confidence 3455666666555554321 123456899999999999999999999655544321110 0000 00
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCCCCCCC--C
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGLDQFGP--G 325 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~--g 325 (1007)
+... ......+....+..++.|.+|.++.... ...++..+..... +
T Consensus 318 Gese-------------------k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 318 GESE-------------------KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred chHH-------------------HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 0011 1223333444456789999999853322 3333333332222 3
Q ss_pred CeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhc
Q 037332 326 SKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAF 366 (1007)
Q Consensus 326 s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~ 366 (1007)
..||-||-.+..... ...+..+.++.-+.++..+.|..+.-
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 334444444433321 13467889999999999999998874
No 274
>PRK06762 hypothetical protein; Provisional
Probab=96.26 E-value=0.012 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++|.|.|++|+||||+|+++..++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 275
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.26 E-value=0.00075 Score=79.28 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.0
Q ss_pred CCCCCEEeeecCCC
Q 037332 932 LSRLRYLYLINCYM 945 (1007)
Q Consensus 932 l~~L~~L~L~~n~~ 945 (1007)
+.+++.+++.+|+.
T Consensus 426 ~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRV 439 (482)
T ss_pred hhccccCCccCccc
Confidence 44455555555543
No 276
>PRK04296 thymidine kinase; Provisional
Probab=96.24 E-value=0.0072 Score=60.32 Aligned_cols=110 Identities=17% Similarity=0.072 Sum_probs=58.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccc---ccCcchHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIK---IRTPNLSECIKKR 293 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~l~~~ 293 (1007)
.++.|+|..|.||||+|..++.+...+...++++. - ......+ ...+ ...++..... ....+....+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~-~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG-EGKV----VSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc-CCcE----ecCCCCcccceEeCChHHHHHHHHh-
Confidence 47889999999999999999998765543333331 1 0011111 1111 1111111000 011223333333
Q ss_pred hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChh
Q 037332 294 LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKR 336 (1007)
Q Consensus 294 l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~ 336 (1007)
..++.-+||+|.+.-. +++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2334458999998543 33444443322 46889999999854
No 277
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.04 Score=60.71 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCccchhhH---HHHHHHHhccCC-------CCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 193 DGLVGLNSR---VEQIKSLLCIGL-------PVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 193 ~~~vGr~~~---~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+++-|.|+. +++|++.|.... .=.+-|.++|++|.|||-||++++-+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 445666654 556666665432 22567899999999999999999865
No 278
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.21 E-value=0.08 Score=57.84 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999998888877543333456889999999999999999864
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.12 Score=52.88 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=90.1
Q ss_pred CCccchhhHHHHHHHHhccC----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGV 262 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 262 (1007)
.++-|.+...+.|.+..... ...-+-|.++|++|.||+.||++|+-.... -|+.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSv----S----- 198 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSV----S----- 198 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEe----e-----
Confidence 56789999999988865321 123578999999999999999999976432 22221 1
Q ss_pred HHHHHHHHHHHHhcccccccCcchHHHHHHHh-CCCcEEEEEecCCCc---------hhhHHHhcC-------CCCCCCC
Q 037332 263 LVRLRERILSEILDENIKIRTPNLSECIKKRL-RQMDVFIVLDDVNKV---------GQLDYLAGG-------LDQFGPG 325 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~l~~~-------~~~~~~g 325 (1007)
-.++....+ ++ .+.+...+-+.- ++|+-+|.+|.|+.. +.-+.+... ......|
T Consensus 199 SSDLvSKWm----GE-----SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 199 SSDLVSKWM----GE-----SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred hHHHHHHHh----cc-----HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 111111111 00 022232232222 468889999998532 112222211 1122345
Q ss_pred CeEEEEeCChhhHhhc---CcccEEEcCCCChhHHH-HHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 326 SKIIVTTRDKRVLDNF---GVSNIYKVNGLENHEAF-KLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 326 s~iliTtR~~~v~~~~---~~~~~~~l~~L~~~~a~-~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.-|+=.|..+-++... ..+..+-+ +|.+..|+ .+|.-+.... +...-+.-.+++.++..|..
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 5555567666555442 12223333 45555554 4566665322 22222333455666676654
No 280
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00099 Score=78.23 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=72.9
Q ss_pred ccccccEEecCCcccccc--chhhhhccCccceEEecCC-CCCcccc----cccccCCCCceeccCccc-cccc--chhh
Q 037332 744 SLTTLVKLDLSYCTRLKS--LSTSICKLRSLYWLYLNNC-SKLESFP----EILEKMERLSYMDLSWTK-IKEL--KSSI 813 (1007)
Q Consensus 744 ~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~n~-l~~l--~~~~ 813 (1007)
.+++|+.|.+.+|..... +-.....++.|+.|++++| ......+ .....+++|+.|+++++. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777777766665 3445667778888888763 2222211 233455777778777766 4422 1222
Q ss_pred hcCCCCCEEeccCCCCCc--cCCcccCCCCCCCEEEeccccCc---ccChhhhcCCCCCEEEec
Q 037332 814 DHLERLRNLKLRECSKLV--SLPENLGSLKSLVYIEAERSAIS---QVPASIAHLNEVKSLSFA 872 (1007)
Q Consensus 814 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~ 872 (1007)
..+++|+.|.+.+|.... .+-.....+++|+.|+++++... .+.....++++|+.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 337788888877776422 12233455677777777776543 122223345555554443
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.16 E-value=0.0064 Score=57.71 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.14 E-value=0.021 Score=57.27 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+.+.+...+..+ -+++.|.|.+|.||||+++.+...+...
T Consensus 6 Q~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344444444432 3688899999999999999998876654
No 283
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.13 E-value=0.0031 Score=59.40 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
||.-..++++.+.+..-......|.|+|..|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4555566666665543223345678999999999999999988543
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.057 Score=60.14 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|.++|..|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876544
No 285
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.09 E-value=0.028 Score=59.18 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccc
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIK 280 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 280 (1007)
.++.+.+++.. ...+|.|.|..|.||||+++++...+...-...+.+.+..+ .. +..+ .++.. ..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E----~~-~~~~-----~q~~v--~~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE----YQ-IPGI-----NQVQV--NE 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce----ec-CCCc-----eEEEe--CC
Confidence 33444444432 23589999999999999999988776432222233322111 11 1000 00000 00
Q ss_pred ccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhc
Q 037332 281 IRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAG 317 (1007)
Q Consensus 281 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~ 317 (1007)
.......+.++..++...=.++++++.+.+....+..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 1113467788888888888999999999887554443
No 286
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.16 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+++++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.022 Score=63.71 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=84.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchH-HHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLS-ECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~l~~~l 294 (1007)
..-|.+||++|.|||-||++|++.-+.+|-. +.. .+++... .++. +... ..+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFis------VKG--------PELlNkY----VGES-----ErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFIS------VKG--------PELLNKY----VGES-----ERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEe------ecC--------HHHHHHH----hhhH-----HHHHHHHHHHhh
Confidence 4568899999999999999999987666531 111 0111111 1110 1112 2222222
Q ss_pred CCCcEEEEEecCCCch-------------hhHHHhcCCCCC--CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCCh
Q 037332 295 RQMDVFIVLDDVNKVG-------------QLDYLAGGLDQF--GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLEN 354 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~ 354 (1007)
..-++.|.+|.++... .+..++..+... -.|.-||-.|-.+++... -..+...-|+.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 4568999999985331 144555555432 245566666655544332 12456788888888
Q ss_pred hHHHHHHhhhhcCCCCC---ChhHHHHHHHHHHHhCCCc
Q 037332 355 HEAFKLFCYYAFKGNHG---PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 355 ~~a~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~g~P 390 (1007)
+|-.+++....-....+ .-+++++|.. .+|.|.-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999988777421111 2345555443 3455654
No 288
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.08 E-value=0.0071 Score=68.45 Aligned_cols=51 Identities=24% Similarity=0.196 Sum_probs=42.1
Q ss_pred CCccchhhHHHHHHHHhc----cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLC----IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.+++|.++.+++|++.|. ......+++.++|++|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 368999999999999882 233456899999999999999999999865443
No 289
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.04 E-value=0.015 Score=64.13 Aligned_cols=111 Identities=13% Similarity=0.207 Sum_probs=65.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
...|.|.|+.|.||||+++.+...+......+++... .. ...........+.............+.++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--dp------~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--DP------IEYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--CC------hhhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 3689999999999999999998877655555554421 10 000000000000000111112356677888898
Q ss_pred CCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhh
Q 037332 296 QMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRV 337 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v 337 (1007)
..+=.|++|.+.+.+.+....... ..|-.|+.|+-...+
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 899999999999888776544331 345555655554433
No 290
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.21 Score=49.91 Aligned_cols=163 Identities=16% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.+.=|.+++++++++.+... -...+-|..||++|.|||-+|++.+.+....|-.-+ .
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA----------g-- 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA----------G-- 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc----------c--
Confidence 45667777777777766321 123567889999999999999998876544432110 0
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHh----CCCcEEEEEecCCCch-------------h---hHHHhcCCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRL----RQMDVFIVLDDVNKVG-------------Q---LDYLAGGLDQ 321 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~-------------~---~~~l~~~~~~ 321 (1007)
-++..... .+....++... ...+.+|.+|.++... . .-+++..+..
T Consensus 239 ------PQLVQMfI--------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 239 ------PQLVQMFI--------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred ------hHHHhhhh--------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 00100000 12222233222 3457888888774221 1 1234445554
Q ss_pred CCCC--CeEEEEeCChhhH-----hhcCcccEEEcCCCChhHHHHHHhhhhcCCC-CCChhHHHHHHH
Q 037332 322 FGPG--SKIIVTTRDKRVL-----DNFGVSNIYKVNGLENHEAFKLFCYYAFKGN-HGPEDLLVLSER 381 (1007)
Q Consensus 322 ~~~g--s~iliTtR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~-~~~~~~~~~~~~ 381 (1007)
|.+. .+||..|..-+++ ..-..++.++.+.-+++.-..++.-+.-+.. .+.-+++++++.
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 5443 4566555433332 2223456677665555555555555554333 334566666554
No 291
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.96 E-value=0.061 Score=62.87 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=37.7
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+.++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356999999999998876543 23456799999999999999998743
No 292
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.96 E-value=0.072 Score=62.88 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=40.3
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888775433334567899999999999999999854
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.95 E-value=0.022 Score=59.27 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.+-++|..+-+...++.|+|.+|+|||++|.++......+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344455445456789999999999999999999765433334455554
No 294
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.00053 Score=68.62 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCch--hhCCCCCcCEEEcc
Q 037332 841 KSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQ--DIGSVFALEKIDLS 918 (1007)
Q Consensus 841 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~ 918 (1007)
.+.+.|++.+|.+.++. ....++.|+.|.|+-|.+..+.. +..+..|++|+|..|.|.++.+ -+.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34445555555555442 12344555555555555444322 3344445555555554444322 23444444444444
Q ss_pred CC
Q 037332 919 GN 920 (1007)
Q Consensus 919 ~n 920 (1007)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 43
No 295
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.93 E-value=0.11 Score=56.81 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=34.0
Q ss_pred ccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 195 LVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777766664433334567899999999999999998753
No 296
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.91 E-value=0.042 Score=54.88 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=26.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
++|.++|+.|+||||.+.+++.+.+.+-..+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 6899999999999999999998876652333444
No 297
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.15 Score=55.76 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
-|--.++|++|.|||++..++++.+ +|+ ++.....++....+ ++.++.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L--~yd--IydLeLt~v~~n~d-----Lr~LL~~---------------------t 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL--NYD--IYDLELTEVKLDSD-----LRHLLLA---------------------T 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc--CCc--eEEeeeccccCcHH-----HHHHHHh---------------------C
Confidence 3556799999999999999999875 344 33332222221111 1222111 1
Q ss_pred CCcEEEEEecCCCchh--------------------hHHHhcCCC--CCC-CCCeEE-EEeCChhhHhh-----cCcccE
Q 037332 296 QMDVFIVLDDVNKVGQ--------------------LDYLAGGLD--QFG-PGSKII-VTTRDKRVLDN-----FGVSNI 346 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~~--------------------~~~l~~~~~--~~~-~gs~il-iTtR~~~v~~~-----~~~~~~ 346 (1007)
..+-+||+.|++..-+ +--|+..+. |.. .+-||| .||-..+-++. -..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3455677777753311 111222221 111 134665 56665543332 123456
Q ss_pred EEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh-hhcCC
Q 037332 347 YKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGS-FLHQK 403 (1007)
Q Consensus 347 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~-~l~~~ 403 (1007)
+.+.-=+.+....|+.++..... +. .++.+|.+...|.-+.=..++. ++..+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 78888888889999988874332 22 2444555555555444444444 34444
No 298
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.88 E-value=0.042 Score=56.84 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------CceEEEE
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGKCFVA 251 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 251 (1007)
+-++|..+-....++.|+|.+|+|||++|..++....... ..++|+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3344444445568999999999999999999987654443 4455654
No 299
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.88 E-value=0.21 Score=57.76 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHHHhCCCcEEEEEecC------CCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCC
Q 037332 289 CIKKRLRQMDVFIVLDDV------NKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNG 351 (1007)
Q Consensus 289 ~l~~~l~~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~ 351 (1007)
.+...+-.+.=++|||.= +..+.++..+..+ +| .||+.|-++....... .+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 344455667889999954 3334444444332 34 4888999998877653 46676664
No 300
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.02 Score=56.61 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=38.1
Q ss_pred CccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 194 GLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
+.=|.+-..+++.+.... +-+..+-|.++|++|.|||.||++|++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 455777777777766532 124467888999999999999999999765554
No 301
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.049 Score=61.81 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc----ccC--ceEEEEecchhhhccCcHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR----EFE--GKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~----~f~--~~~~~~~~~~~~~~~~~~~ 264 (1007)
..+++||-+.-++.|...+..+. -..--...|+-|+||||+|+.++..+-- ..+ ..|..+ ...... . ..
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~-~~ 88 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-S-LI 88 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-C-cc
Confidence 34578999999999999886543 2344567899999999999999985421 111 111110 000000 0 00
Q ss_pred HHHHHHHHHHhcccccccCcchHHHHHHH---h-----CCCcEEEEEecCC--CchhhHHHhcCCCCCCCCCeEEEEeCC
Q 037332 265 RLRERILSEILDENIKIRTPNLSECIKKR---L-----RQMDVFIVLDDVN--KVGQLDYLAGGLDQFGPGSKIIVTTRD 334 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~---l-----~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtR~ 334 (1007)
++. ++... ....++.+++. . +++.=+.|+|.|. +...|..++..+.-..+....|..|++
T Consensus 89 Dvi-----EiDaA-----Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 89 DVI-----EIDAA-----SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cch-----hhhhh-----hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 000 00000 01122233322 2 2344588999996 445588888777644455555655555
Q ss_pred hh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 335 KR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 335 ~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
.+ +... ....+.|.++.++.++-...+...+-... -....+...-|++..+|.
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGS 213 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCC
Confidence 53 3222 22347899999999988888877663222 222334445566666664
No 302
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.78 E-value=0.04 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 303
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.065 Score=51.76 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+.|.+.|.+|+||||+|++++..++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457789999999999999999876554
No 304
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.76 E-value=0.027 Score=59.19 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 305
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.73 E-value=0.024 Score=60.79 Aligned_cols=47 Identities=28% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
|-.+|. .+-+.-+++-|+|++|+||||||..++......-...+|+.
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 444554 34456789999999999999999998887655555566665
No 306
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.69 E-value=0.018 Score=54.49 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
..+|-|.|.+|.||||||+++..++...-....++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 35899999999999999999999988775544444
No 307
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.068 Score=64.29 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCccchhhHHHHHHHHhccCC----C--CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIGL----P--VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~----~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
..++|-++.+..|.+.+.... . ..-.+.+.|+.|+|||.||++++.-+.+..+..+-+. +.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 347788888888887775321 1 3457788999999999999999998766555444332 2222
Q ss_pred HHHHHHHHhcccccccCcchHHHHHHHhCCCcE-EEEEecCCCchh
Q 037332 267 RERILSEILDENIKIRTPNLSECIKKRLRQMDV-FIVLDDVNKVGQ 311 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~ 311 (1007)
++ ...+.+.+..-...+....+.+.++.++| +|.||||+..+.
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 22 23333333322234556678888888876 666799976654
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.66 E-value=0.021 Score=61.12 Aligned_cols=47 Identities=30% Similarity=0.346 Sum_probs=34.6
Q ss_pred HHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
|-.+|. .+-+.-+++-|+|++|+||||||..++......-..++|+.
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 334554 44456789999999999999999998887655545556664
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.099 Score=57.30 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
...+++++|+.|+||||++.+++.+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 347999999999999999999998764443
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.65 E-value=0.054 Score=58.54 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.65 E-value=0.044 Score=60.51 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
++-+.|..+-....++.|.|.+|+|||||+..++......-..++|+.
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344455444345579999999999999999999987765544455554
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.63 E-value=0.01 Score=59.57 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
||+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 313
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.63 E-value=0.059 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 314
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.61 E-value=0.029 Score=58.45 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc------cCceEEEE
Q 037332 206 KSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE------FEGKCFVA 251 (1007)
Q Consensus 206 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 251 (1007)
-++|..+-....++.|+|.+|+|||++|..++...... -..++|+.
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 9 DELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred HhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34444444556899999999999999999998653222 24556665
No 315
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.00054 Score=68.56 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=50.5
Q ss_pred eEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeeccCCcCCCCC--CCCCCCCCCcEEecccccc
Q 037332 590 RYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRI--PEPSEIPNLEKINLWNCTN 667 (1007)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~--~~~~~l~~L~~L~L~~~~~ 667 (1007)
+.|++.|+.+.++.-.-.++.|++|.|+-|+|+++ ..+..+++|+.|.|+.|.+...- .-+.++++|+.|-|..|+.
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 33444444444444444555666666666666655 23455666666666666542211 1135666666666666655
Q ss_pred cCCCCc-----ccccCCCccEEE
Q 037332 668 LAYIPC-----NIQNFINLGVLC 685 (1007)
Q Consensus 668 ~~~l~~-----~~~~l~~L~~L~ 685 (1007)
...-+. -+.-|++|++|+
T Consensus 101 c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 101 CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccccchhHHHHHHHHcccchhcc
Confidence 444332 244566666665
No 316
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.58 E-value=0.011 Score=54.98 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 317
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.13 Score=55.84 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=48.7
Q ss_pred CcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChh-hHhhc-CcccEEEcCCCChhHHHHHHhhhhcCCCCCC
Q 037332 297 MDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKR-VLDNF-GVSNIYKVNGLENHEAFKLFCYYAFKGNHGP 372 (1007)
Q Consensus 297 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 372 (1007)
++-++|+|+++..+ ....++..+.....++.+|++|.+.+ +.... .....+.+.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--C
Confidence 34455668886543 33444433332234566777777654 33321 223678999999999988886532 1 1
Q ss_pred hhHHHHHHHHHHHhCCCchH
Q 037332 373 EDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 373 ~~~~~~~~~i~~~~~g~PLa 392 (1007)
.. ...+..++|-|+.
T Consensus 188 ~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-----EERLAFHSGAPLF 202 (325)
T ss_pred cH-----HHHHHHhCCChhh
Confidence 11 1123567898854
No 318
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.56 E-value=0.057 Score=65.81 Aligned_cols=49 Identities=24% Similarity=0.214 Sum_probs=38.6
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999999988877665333334578899999999999999998854
No 319
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.094 Score=52.45 Aligned_cols=54 Identities=26% Similarity=0.483 Sum_probs=36.4
Q ss_pred CccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEe
Q 037332 194 GLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVAN 252 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 252 (1007)
+.=|=.++++++.+.... +-+..+-|.++|++|.|||-+|++|+++. ..||+..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirv 242 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRV 242 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEee
Confidence 344555666666554321 22345678899999999999999999974 2456553
No 320
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.54 E-value=0.025 Score=63.41 Aligned_cols=45 Identities=22% Similarity=0.096 Sum_probs=38.3
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhc
Confidence 469999999999988776543 578999999999999999998654
No 321
>PRK09354 recA recombinase A; Provisional
Probab=95.53 E-value=0.027 Score=60.79 Aligned_cols=48 Identities=31% Similarity=0.342 Sum_probs=35.9
Q ss_pred HHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.|-.+|. .+-+.-+++-|+|++|+||||||..++......-...+|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3445565 44456789999999999999999998887655555566665
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.53 E-value=0.039 Score=56.10 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE 258 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 258 (1007)
+..++.+.+.....+..+|+|.|+||+||+||..++...+.++ ...+=+..+...+.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSP 70 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGG
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCC
Confidence 4445555555545567899999999999999999999987654 22333434444333
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.51 E-value=0.044 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|.|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3689999999999999999998754
No 324
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.3 Score=53.07 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
..++++++|+.|+||||++..++.....+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999988764432334444
No 325
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.43 E-value=0.0092 Score=53.63 Aligned_cols=28 Identities=36% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhcccCc
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNFREFEG 246 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 246 (1007)
|.|+|.+|+||||+|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777753
No 326
>PTZ00301 uridine kinase; Provisional
Probab=95.42 E-value=0.019 Score=57.90 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
..+|+|.|.+|+||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875544
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.41 E-value=0.031 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
++.++|++|+||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.24 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.++++++|++|+||||++.+++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999888765
No 329
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.39 E-value=0.089 Score=51.07 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=42.6
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC--
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ-- 296 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-- 296 (1007)
+.|.|.+|+|||++|.++... .....+++.... ..+ .++.+.+.......+....+.+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~----~~d--~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE----AFD--DEMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC----cCC--HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999998765 223445554222 222 233444333222222222223333444444422
Q ss_pred CcEEEEEecC
Q 037332 297 MDVFIVLDDV 306 (1007)
Q Consensus 297 kr~LlVlDdv 306 (1007)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347899986
No 330
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.38 E-value=0.064 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|.|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998754
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.38 E-value=0.013 Score=47.17 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 332
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.15 Score=57.84 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|+|+|.+|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998876443
No 333
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.33 E-value=0.024 Score=56.21 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=25.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
-.+++|.|..|.|||||++.++-.... ....+++
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~ 58 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILL 58 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEE
Confidence 458999999999999999999875432 3444444
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.30 E-value=0.036 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998864
No 335
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.29 E-value=0.034 Score=58.25 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=27.1
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|-++|..+-....+.-|+|.+|+|||+||..++-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 4445554333345689999999999999999887643
No 336
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.28 E-value=0.017 Score=61.70 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=70.1
Q ss_pred CccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEE-EEecchhhhccCcHHHHHHHHHH
Q 037332 194 GLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCF-VANVREESEKEGVLVRLRERILS 272 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 272 (1007)
.+.-.....+++.++|...-...+.|.|.|..|.||||+++++...+... ...+. +.+..+...... .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~~----------~ 173 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPGP----------N 173 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SCS----------S
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeeccc----------c
Confidence 34433444455555554332235789999999999999999999876555 33333 332111110000 0
Q ss_pred HHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeE-EEEeCCh
Q 037332 273 EILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKI-IVTTRDK 335 (1007)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~i-liTtR~~ 335 (1007)
...-... ....+..+.++..|+..+=.+|++.+.+.+.++.+... ..|..+ +-|....
T Consensus 174 ~~~~~~~-~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 174 QIQIQTR-RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEEEEE-TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred eEEEEee-cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000000 12245678888999988889999999999888775433 456677 5554433
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.25 E-value=0.12 Score=54.02 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999988653
No 338
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.23 E-value=0.044 Score=57.56 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..|.|+|.+|+||||+|+.+...+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468899999999999999999977653
No 339
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.023 Score=56.46 Aligned_cols=30 Identities=40% Similarity=0.380 Sum_probs=26.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..+.+|||.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999988755
No 340
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.20 E-value=0.18 Score=64.80 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+-|.++|++|.|||.||++++...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999874
No 341
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.16 E-value=0.043 Score=62.02 Aligned_cols=93 Identities=25% Similarity=0.252 Sum_probs=53.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhc-ccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccC------cchHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFR-EFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRT------PNLSE 288 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~ 288 (1007)
-.-.+|+|.+|+|||||++.+++.+.. +-++.+++..+.+-... +..+.+.+-.++......... ....-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 457889999999999999999997654 33445556555543322 444444431111111111100 11122
Q ss_pred HHHHHh--CCCcEEEEEecCCCchh
Q 037332 289 CIKKRL--RQMDVFIVLDDVNKVGQ 311 (1007)
Q Consensus 289 ~l~~~l--~~kr~LlVlDdv~~~~~ 311 (1007)
.+.+++ +++.+||++|++.....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 233444 68999999999865443
No 342
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.041 Score=56.60 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=26.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
-...++|||++|.|||-+|++|+..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 357899999999999999999999876555
No 343
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.14 E-value=0.03 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|.+.|.-|.||||+++.++..+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999875
No 344
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.13 E-value=0.044 Score=57.45 Aligned_cols=57 Identities=30% Similarity=0.220 Sum_probs=45.1
Q ss_pred CCCCCccchhhHHHH---HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc
Q 037332 190 TDSDGLVGLNSRVEQ---IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG 246 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 246 (1007)
...+.+||..+..+. +.++...+.-.-+.|.|+|++|.|||+||..+.+.+...-+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 346789999877764 566666655556899999999999999999999998766443
No 345
>PRK04328 hypothetical protein; Provisional
Probab=95.13 E-value=0.081 Score=55.36 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
|-++|..+-..-.++.|.|.+|.|||+||..+......+-..++|+.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44445444455689999999999999999998765433344456664
No 346
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.32 Score=55.94 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCccchhhHHHHHHHHhccCC-----------CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIGL-----------PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.++=|+.+.++.+.+.+.... ....-|.++|++|.|||-||.+++....-+ |+. +..
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ecC------
Confidence 345577777777776665432 123468899999999999999998763222 232 211
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCCCC--CCCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGLDQ--FGPGS 326 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~gs 326 (1007)
. +++... ++.. .+...+.+.+.-..|++.+.+|.+++... ...++..+.. +-.|.
T Consensus 735 -P-ElL~Ky---IGaS-----Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 735 -P-ELLSKY---IGAS-----EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred -H-HHHHHH---hccc-----HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 1 111111 1111 12334445555567999999999865431 4555555431 12455
Q ss_pred eEEE-EeCChhhHhh----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 327 KIIV-TTRDKRVLDN----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 327 ~ili-TtR~~~v~~~----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
-|+- |||..-+-.. -..++.+.-+.-++.+-.+.|...+
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 5554 4554322111 1123333444445555666665443
No 347
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.072 Score=55.71 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEec
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANV 253 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 253 (1007)
+-++|..+-+..+++-|+|+.|.||||+|.+++-.....-...+|+...
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 3344444446778999999999999999999888766666677888643
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.11 E-value=0.014 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
|-|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998775543
No 349
>PRK08233 hypothetical protein; Provisional
Probab=95.10 E-value=0.018 Score=57.32 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 350
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.10 E-value=0.14 Score=54.19 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh--h-hcccCceE
Q 037332 197 GLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ--N-FREFEGKC 248 (1007)
Q Consensus 197 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~-~~~f~~~~ 248 (1007)
+|..+..--.++|. ++++..|.+.|.+|.|||-||.+..-. + ++.|...+
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 34444333344443 356889999999999999998775542 2 34455443
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.08 E-value=0.072 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|.|..|.|||||++.++--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3589999999999999999988644
No 352
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.08 E-value=0.097 Score=50.41 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=63.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHh--ccc--ccc-c-------Cc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEIL--DEN--IKI-R-------TP 284 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~--~~~-~-------~~ 284 (1007)
..|-|++..|.||||.|..++.+...+=-.++++--+.. ....+ -...++.+...+. +.. ... . ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~G-E~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNG-ERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccC-hHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 577788889999999999988875443222322211111 11112 2222222200000 000 000 0 01
Q ss_pred chHHHHHHHhCCCcE-EEEEecCCCc-----hhhHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCC
Q 037332 285 NLSECIKKRLRQMDV-FIVLDDVNKV-----GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNG 351 (1007)
Q Consensus 285 ~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~ 351 (1007)
+..+..++.+...+| |+|||.+-.. -..+.+...+....++..||+|-|+..-.-.--.+.+.++..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 122344555554444 9999988322 112233333333346779999999874322212334444443
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.08 E-value=0.021 Score=58.27 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 354
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.07 E-value=0.052 Score=55.95 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
+...++.|.|.+|.||||+|.+++.....+-...+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44569999999999999999777765533323345554
No 355
>PRK04040 adenylate kinase; Provisional
Probab=95.06 E-value=0.022 Score=56.51 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 356
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.06 E-value=0.047 Score=60.02 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=55.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCc--eE-EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEG--KC-FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK 292 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (1007)
...|.|+|+.|.||||+++.+...+....+. ++ .+.+.- ... ...+.... ..+...............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi----E~~-~~~~~~~~-~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI----EFV-YDEIETIS-ASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc----eEe-cccccccc-ceeeeeeccccccCHHHHHHH
Confidence 4699999999999999999998877544332 22 221111 111 11110000 000000111111345677888
Q ss_pred HhCCCcEEEEEecCCCchhhHHHh
Q 037332 293 RLRQMDVFIVLDDVNKVGQLDYLA 316 (1007)
Q Consensus 293 ~l~~kr~LlVlDdv~~~~~~~~l~ 316 (1007)
.|+..+-.+++..+.+.+..+...
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 898899999999999888775443
No 357
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.06 E-value=0.034 Score=57.52 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 213 LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
.....+|+|.|+.|.|||||++.+...++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998776543
No 358
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.05 E-value=0.027 Score=53.97 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEecCCCcHHHHHHHHHHhh
Q 037332 221 IWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 221 I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999874
No 359
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.01 E-value=0.049 Score=58.19 Aligned_cols=58 Identities=31% Similarity=0.276 Sum_probs=41.2
Q ss_pred CCCccchhhHHHH---HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEE
Q 037332 192 SDGLVGLNSRVEQ---IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCF 249 (1007)
Q Consensus 192 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 249 (1007)
.+.+||..+..+. +.+++..+.-.-+.|.+.|++|.|||+||..+++.+..+.+....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 4689999887765 355665554345889999999999999999999999887775443
No 360
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.00 E-value=0.14 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|+|..|.|||||++.++-..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 361
>PRK03839 putative kinase; Provisional
Probab=95.00 E-value=0.019 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 362
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.00 E-value=0.075 Score=59.61 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=54.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccC---c---
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRT---P--- 284 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~---~--- 284 (1007)
-+-++|.|.+|+|||||+..++.....+....+.+..+++-... +.++.+.+...-..... ..+. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rE---v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 46789999999999999999988766554444444445443222 55555555442111100 0000 0
Q ss_pred --chHHHHHHHh---CCCcEEEEEecCCCch
Q 037332 285 --NLSECIKKRL---RQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 285 --~~~~~l~~~l---~~kr~LlVlDdv~~~~ 310 (1007)
...-.+.+++ +++++|+++|++....
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 1123345555 6799999999985443
No 363
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.12 Score=53.00 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHhCCCcEEEEEecC----C--CchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh
Q 037332 288 ECIKKRLRQMDVFIVLDDV----N--KVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN 340 (1007)
Q Consensus 288 ~~l~~~l~~kr~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~ 340 (1007)
-.+.+.|.+++=|+|||.- + ....+-.++..+. ..|..|+++|-|-+....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 4566778888999999953 2 2233444444444 238899999998765543
No 364
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.99 E-value=0.11 Score=49.69 Aligned_cols=54 Identities=9% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCcEEEEEec----CCCchhhHHH--hcCCCCCCCCCeEEEEeCChhhHhhcC
Q 037332 287 SECIKKRLRQMDVFIVLDD----VNKVGQLDYL--AGGLDQFGPGSKIIVTTRDKRVLDNFG 342 (1007)
Q Consensus 287 ~~~l~~~l~~kr~LlVlDd----v~~~~~~~~l--~~~~~~~~~gs~iliTtR~~~v~~~~~ 342 (1007)
.-.|.+.+-+++-+++-|. ++..-.|+-+ ...+. ..|+.||++|-+.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 3445666677888888884 4444445433 22222 56999999999999887764
No 365
>PTZ00494 tuzin-like protein; Provisional
Probab=94.99 E-value=2.3 Score=46.68 Aligned_cols=181 Identities=14% Similarity=0.086 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhcc-----cccCCCCCCccchhhHHHHHHHHhccC-CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc
Q 037332 173 DVIVKDILKKLES-----VTISTDSDGLVGLNSRVEQIKSLLCIG-LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG 246 (1007)
Q Consensus 173 ~~i~~~i~~~~~~-----~~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 246 (1007)
.-.++.+.+..+. ...+.....+|.|+.+-..+.+.|..- ....+++++.|.-|.||++|.+....+ .-..
T Consensus 346 ~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~p 422 (664)
T PTZ00494 346 RTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVA 422 (664)
T ss_pred HHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCC
Confidence 4445666655441 123445678999999988888887653 356899999999999999999987664 2233
Q ss_pred eEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH-------HhCCCcEEEEEe--cCCCchhhHHHhc
Q 037332 247 KCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK-------RLRQMDVFIVLD--DVNKVGQLDYLAG 317 (1007)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~-------~l~~kr~LlVlD--dv~~~~~~~~l~~ 317 (1007)
.+|+. ++. ..+.+..+.+.+ +....+ ...++.+.+.+ ...++.=+||+- +-.+..-...-.-
T Consensus 423 aV~VD-VRg---~EDtLrsVVKAL----gV~nve-~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v 493 (664)
T PTZ00494 423 LVHVD-VGG---TEDTLRSVVRAL----GVSNVE-VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV 493 (664)
T ss_pred eEEEE-ecC---CcchHHHHHHHh----CCCChh-hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH
Confidence 55664 433 233255544444 333222 12344433332 234455566653 2222221111011
Q ss_pred CCCCCCCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 318 GLDQFGPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 318 ~~~~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
.+...-.-++|++----+.+-.. ..--..|-++.++.++|.++-....
T Consensus 494 aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 494 SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11112345677764433322111 1112578999999999998775443
No 366
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.14 Score=50.17 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
-.+++|.|..|.|||||.+.++--... ....+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 458999999999999999999875432 3334444
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.98 E-value=0.11 Score=59.37 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.++-+.|..+-..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555444445679999999999999999999987754333455554
No 368
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.98 E-value=0.037 Score=61.50 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|.+.|.+|+||||+|.+++.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999874
No 369
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.12 Score=59.61 Aligned_cols=174 Identities=19% Similarity=0.224 Sum_probs=92.7
Q ss_pred CCCCccchhhHHHHHHHHh---ccCC-------CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 191 DSDGLVGLNSRVEQIKSLL---CIGL-------PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
...+.-|.|+.++++.+.+ .... .-.+-|.++|++|.|||.||++++-...-.|-.. .+ ++
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i-----SG--S~-- 218 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI-----SG--SD-- 218 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec-----cc--hh--
Confidence 3456788887777666554 3221 2256789999999999999999998644333210 00 00
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQFGP 324 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 324 (1007)
..+ ++. + .......+...+..++-++.+++|.++... .+..++.....++.
T Consensus 219 --FVe----mfV---G----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 219 --FVE----MFV---G----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred --hhh----hhc---C----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 000 000 0 001223344555556667999999774321 14445544454443
Q ss_pred CC-eEEE-EeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 325 GS-KIIV-TTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 325 gs-~ili-TtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
+. -|++ .|-.++|... -..++.+.++.-+-..-.+.+.-|+-..... .-++ ..|++.+-|.-
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfs 355 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFS 355 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcc
Confidence 22 2333 3333334322 2345677777777677777777665332222 1122 22666666664
No 370
>PRK00625 shikimate kinase; Provisional
Probab=94.96 E-value=0.02 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|.++||+|+||||+|+.+..++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 371
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.95 E-value=0.11 Score=59.20 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.++-+.|..+-..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4455555444455679999999999999999999887655433455664
No 372
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.94 E-value=0.027 Score=57.30 Aligned_cols=28 Identities=46% Similarity=0.521 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+...+|+|+|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 373
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.21 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 374
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.92 E-value=0.24 Score=61.54 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=97.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc----CceEEEEecchhhhccCcHH--HHHHHHHHHHhcccccccCcchHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF----EGKCFVANVREESEKEGVLV--RLRERILSEILDENIKIRTPNLSECI 290 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~l 290 (1007)
.-+.|+|.+|.||||+...++-....+. +..+|+. ............ .+..-+...+...... .+.....
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~---~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQGIA---KQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccCCc---chhhHHH
Confidence 3688999999999999999887543322 2223332 110000000011 1222222222221111 2222333
Q ss_pred HHHhCCCcEEEEEecCCCchh------hHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCCCChhHHHHHHh--
Q 037332 291 KKRLRQMDVFIVLDDVNKVGQ------LDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNGLENHEAFKLFC-- 362 (1007)
Q Consensus 291 ~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~-- 362 (1007)
.+.++..++|+.+|+++.... ...+....+. -+.+.+|+|+|....-.....-..+++..+.++.-.....
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 578889999999999875543 1221111121 2588999999877554433333455666666554332221
Q ss_pred ------hhhcCCCCCC-hhHH-HH---HHHHHHHhCCCchHHHHHhhhhc------CCCHHHHHHHHHHhhh
Q 037332 363 ------YYAFKGNHGP-EDLL-VL---SERVLYYANGNPLALRVLGSFLH------QKNKLDWEIALENLKL 417 (1007)
Q Consensus 363 ------~~a~~~~~~~-~~~~-~~---~~~i~~~~~g~PLal~~~~~~l~------~~~~~~w~~~l~~l~~ 417 (1007)
...++..... ..+. .+ ..+-++.....|+.+...+..-. ....+-++.+++.+-.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 1122221111 0111 11 12334555788988888775443 2234556666665443
No 375
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.92 E-value=0.11 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998863
No 376
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.91 E-value=0.057 Score=55.24 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=65.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecc--hhhhccCcHHHHHHHHHHHHhccccc-------ccCcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVR--EESEKEGVLVRLRERILSEILDENIK-------IRTPN 285 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~-------~~~~~ 285 (1007)
...+++|+|..|.||||+|+.+..-...... .+++..-. ... ... ..+...+++..++-.... ....+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~-~~~-~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLS-KEE-RRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcc-hhH-HHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999875443333 33332110 000 111 223334444443322111 11112
Q ss_pred hH-HHHHHHhCCCcEEEEEecCCCc------hhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc
Q 037332 286 LS-ECIKKRLRQMDVFIVLDDVNKV------GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF 341 (1007)
Q Consensus 286 ~~-~~l~~~l~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~ 341 (1007)
.+ -.+.+.|.-++-++|.|...+. .+.-.++..+. ...|-..+..|-+-.++..+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 22 3456677788899999975332 22223332222 12455677777777776654
No 377
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.90 E-value=0.084 Score=59.43 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccC-------
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRT------- 283 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~------- 283 (1007)
-+-++|.|.+|+|||||+..+++....+...++.+..+++-... +.++.+.+...-..... ..+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rE---v~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSRE---GHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHH---HHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 46799999999999999999998775443334333344433222 45555555432111000 0000
Q ss_pred -cchHHHHHHHh---CCCcEEEEEecCCCch
Q 037332 284 -PNLSECIKKRL---RQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 284 -~~~~~~l~~~l---~~kr~LlVlDdv~~~~ 310 (1007)
....-.+.+++ +++++|+++|++....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 01123345555 3789999999995443
No 378
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.90 E-value=0.12 Score=55.27 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876543
No 379
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.89 E-value=0.12 Score=54.26 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc--c---ccCcchHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI--K---IRTPNLSEC 289 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~---~~~~~~~~~ 289 (1007)
+...++|+|..|.|||||.+.++..+... ...+++.. ........ ..++...+ ..+..... . ........-
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~-~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDE-RSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchh-HHHHHHHh-cccccccccccccccccchHHHH
Confidence 35789999999999999999999876543 22233311 01100000 11222111 00111000 0 000011222
Q ss_pred HHHHh-CCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHh
Q 037332 290 IKKRL-RQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLD 339 (1007)
Q Consensus 290 l~~~l-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~ 339 (1007)
+...+ ...+=++++|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 23333 35778999999988877777765543 5778999998776643
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.85 E-value=0.06 Score=52.25 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccC-cchHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRT-PNLSECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~l~~~l 294 (1007)
-.+++|.|..|.|||||.+.++-... .....+++... ... ... .....+. .+.-.. .... +...-.+...+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~-~~~~~~~---~i~~~~-qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-FAS-PRDARRA---GIAMVY-QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-cCC-HHHHHhc---CeEEEE-ecCHHHHHHHHHHHHH
Confidence 35899999999999999999986543 23444554321 111 000 1111000 000000 0100 11122344445
Q ss_pred CCCcEEEEEecCC---CchhhHHHhcCCCCC-CCCCeEEEEeCChhhHh
Q 037332 295 RQMDVFIVLDDVN---KVGQLDYLAGGLDQF-GPGSKIIVTTRDKRVLD 339 (1007)
Q Consensus 295 ~~kr~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtR~~~v~~ 339 (1007)
-.++-++++|+.. |.+..+.+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5567788899863 222223332222211 24677888888876444
No 381
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.012 Score=35.06 Aligned_cols=18 Identities=56% Similarity=0.964 Sum_probs=9.5
Q ss_pred cCEEEccCCCCccchhhh
Q 037332 912 LEKIDLSGNNFETLPASM 929 (1007)
Q Consensus 912 L~~L~L~~n~l~~lp~~~ 929 (1007)
|++|+|++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.80 E-value=0.036 Score=55.19 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc---cccCcchHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI---KIRTPNLSECIKK 292 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~l~~ 292 (1007)
...++|.|..|.||||+++.+...+.... ..+.+.+..+...... ... ++..... ........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHP-------NWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCCC-------CEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 36899999999999999999988664322 2222221111100000 000 0000000 0011345667777
Q ss_pred HhCCCcEEEEEecCCCchhhHHHhc
Q 037332 293 RLRQMDVFIVLDDVNKVGQLDYLAG 317 (1007)
Q Consensus 293 ~l~~kr~LlVlDdv~~~~~~~~l~~ 317 (1007)
.++..+=.++++.+.+.+.++.+..
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHHH
Confidence 7887888899999998887765543
No 383
>PRK06217 hypothetical protein; Validated
Probab=94.79 E-value=0.12 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|.|.|.+|+||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 384
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.79 E-value=0.083 Score=60.77 Aligned_cols=26 Identities=42% Similarity=0.568 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+.-++..++|++|+||||||..++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 45689999999999999999999886
No 385
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.79 E-value=0.077 Score=62.03 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=41.2
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34679999999999888876544445678899999999999999999864
No 386
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=0.15 Score=50.16 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc---ccCc-eEEEEecch-hhhccCcHHHHHHHHHHHHhcccccccCcchHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR---EFEG-KCFVANVRE-ESEKEGVLVRLRERILSEILDENIKIRTPNLSECIK 291 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~-~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 291 (1007)
.-..|.|++|+|||||.+.+++-+.. +|.. .+-+.+-+. ...-.....+.....--++.+.. .....++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c-----pk~~gmmm 212 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC-----PKAEGMMM 212 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccc-----hHHHHHHH
Confidence 34678999999999999999986543 3432 333332221 11100001111111111111111 11222233
Q ss_pred HHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhh
Q 037332 292 KRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRV 337 (1007)
Q Consensus 292 ~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v 337 (1007)
..-...+=.+|+|.+-..++-.++..++ ..|.+++.|..-..+
T Consensus 213 aIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred HHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 3223456789999998888876766654 468887777654433
No 387
>PRK08356 hypothetical protein; Provisional
Probab=94.77 E-value=0.15 Score=51.24 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIF 237 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~ 237 (1007)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 388
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.75 E-value=0.037 Score=58.07 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKC 248 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 248 (1007)
.+..+|.|.|.+|.|||||+..+...++......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 45789999999999999999999998876654333
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.75 E-value=0.062 Score=62.26 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 202 VEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 202 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
+.++-++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34566666655566789999999999999999999987655544455554
No 390
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.70 E-value=0.086 Score=57.51 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=28.4
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+.++|..+-....++-|+|.+|+|||++|..++...
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 3444554444566899999999999999999998764
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.70 E-value=0.045 Score=66.56 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCcEEEEEecCCC---chhhHH----HhcCCCCCCCCCeEEEEeCChhhHhhcCc-ccE--EEcCCCChhHHHHHHhhhh
Q 037332 296 QMDVFIVLDDVNK---VGQLDY----LAGGLDQFGPGSKIIVTTRDKRVLDNFGV-SNI--YKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 296 ~kr~LlVlDdv~~---~~~~~~----l~~~~~~~~~gs~iliTtR~~~v~~~~~~-~~~--~~l~~L~~~~a~~Lf~~~a 365 (1007)
..+-|+++|.... ...... +...+. ..|+.+|+||-..++...... ..+ +.+. ++.+. .. |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~~-l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEET-LS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCCC-Cc-eEEEE
Confidence 4788999999843 222222 222222 357899999999877543211 111 1111 11111 00 11222
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 037332 366 FKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIALENLK 416 (1007)
Q Consensus 366 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~l~ 416 (1007)
. ...+.. ..|-+|++++ |+|-.+..-|..+.+....+++.++..+.
T Consensus 476 ~-~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 L-KGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred C-CCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 112221 2355666665 88888877777776655556666666554
No 392
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.69 E-value=0.1 Score=58.24 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCc-----
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTP----- 284 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~----- 284 (1007)
.-+-++|.|.+|+|||||+..+......+...++.+..+++-... +.++.+.+...-..... ..+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rE---v~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 346789999999999999999988765544444444445443222 55555555432111000 00000
Q ss_pred ---chHHHHHHHh---CCCcEEEEEecCCCchh
Q 037332 285 ---NLSECIKKRL---RQMDVFIVLDDVNKVGQ 311 (1007)
Q Consensus 285 ---~~~~~l~~~l---~~kr~LlVlDdv~~~~~ 311 (1007)
...-.+.+++ +++++|+++||+....+
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHHH
Confidence 0123345555 46899999999954443
No 393
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.13 Score=59.50 Aligned_cols=95 Identities=20% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCccchhhHHHHHHHHhccC----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGV 262 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 262 (1007)
++.=|.++-+.+|.+-+... -....-|.+||++|.|||-+|++|+-+..-. |+. +.. .
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-VKG----P-- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-VKG----P-- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-ecC----H--
Confidence 56678888888888766431 1234578899999999999999999764332 333 111 0
Q ss_pred HHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc
Q 037332 263 LVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV 309 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 309 (1007)
+ ++..-.++ .+++..+.+.+.-..+++.|.+|.+++.
T Consensus 740 --E----LLNMYVGq----SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --E----LLNMYVGQ----SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --H----HHHHHhcc----hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1 11111111 1133444455555678999999998754
No 394
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.13 Score=52.24 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=39.6
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
.+.=|.+.++++|.+..... -...+-|.+||.+|.|||-||++|++....-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 44667888888888876432 12356778999999999999999999865554
No 395
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.67 E-value=0.09 Score=56.45 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=54.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc-CceE-EEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKC-FVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
+.+.|.|..|+||||+++++...+.... +.++ .+.+..+......... ++ ... .......+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~--~~~-~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QL--RTS-DDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EE--Eec-CCCCCHHHHHHHHh
Confidence 4677999999999999999998775432 2222 2322222110000000 00 000 01125678888889
Q ss_pred CCCcEEEEEecCCCchhhHHHh
Q 037332 295 RQMDVFIVLDDVNKVGQLDYLA 316 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~~~~l~ 316 (1007)
+..+=.||+..+.+.+.++.+.
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 8888889999999988776544
No 396
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.65 E-value=0.15 Score=51.56 Aligned_cols=20 Identities=45% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 037332 218 IVGIWGMGGIGKTTIAGAIF 237 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~ 237 (1007)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999986
No 397
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.64 E-value=0.13 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|+|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998754
No 398
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.63 E-value=0.21 Score=53.28 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 251 (1007)
...++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34588899999999999999998876544 33345554
No 399
>PRK06547 hypothetical protein; Provisional
Probab=94.63 E-value=0.032 Score=54.39 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
....+|+|.|++|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998864
No 400
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.62 E-value=0.031 Score=54.47 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=29.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh-cccCceEEEEecchh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF-REFEGKCFVANVREE 256 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~ 256 (1007)
..++.+.|+.|+|||.||++++..+. ......+ ..++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~-~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLI-RIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE-EEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchH-HHhhhcc
Confidence 35788999999999999999999876 4544333 3344443
No 401
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.61 E-value=0.044 Score=60.09 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCccchhhHHHHHHHHhccC------------CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG------------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
..+||.++.++.+.-++... ....+-|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35788888888776555421 11236788999999999999999999875443
No 402
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.58 E-value=0.095 Score=51.22 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=59.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHh----ccc--ccc-cC-----
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEIL----DEN--IKI-RT----- 283 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~--~~~-~~----- 283 (1007)
...|-|+|..|-||||.|..++.+...+=..+.++--... ....+ -...++.+. .+. +.. ... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg-~~~~G-E~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG-AWSTG-ERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CCccC-HHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 3688899999999999999988875443222333322211 11122 222222210 000 000 000 00
Q ss_pred --cchHHHHHHHhCCCc-EEEEEecCCCch-----hhHHHhcCCCCCCCCCeEEEEeCChh
Q 037332 284 --PNLSECIKKRLRQMD-VFIVLDDVNKVG-----QLDYLAGGLDQFGPGSKIIVTTRDKR 336 (1007)
Q Consensus 284 --~~~~~~l~~~l~~kr-~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iliTtR~~~ 336 (1007)
.+..+..++.+...+ =|+|||.+-..- ..+++...+....++..||+|=|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112234455554444 499999983221 23333333333346789999999874
No 403
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.57 E-value=0.12 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.55 E-value=0.03 Score=56.05 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+..+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 405
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.55 E-value=0.049 Score=53.70 Aligned_cols=27 Identities=37% Similarity=0.303 Sum_probs=24.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..+|+|.|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999998754
No 406
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.021 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|+|+|.+|+||||+.+.+-..+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999887766
No 407
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.13 Score=50.57 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|+|..|.|||||++.++-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.52 E-value=0.061 Score=58.29 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc-CcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE-GVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
...+.|.|..|.||||+++++...+..... .+.+.+..+..... ..+ . +.. .........-...+.++..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~-iv~ied~~El~~~~~~~~-~----l~~--~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDER-IITIEDTREIFLPHPNYV-H----LFY--SKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcccc-EEEEcCccccCCCCCCEE-E----EEe--cCCCCCcCccCHHHHHHHHh
Confidence 368999999999999999999876543322 23333222211100 000 0 000 00000011134567777888
Q ss_pred CCCcEEEEEecCCCchhhHHHhcCCCCCCCCCe-EEEEeCChhh
Q 037332 295 RQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSK-IIVTTRDKRV 337 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-iliTtR~~~v 337 (1007)
+...=.+|+|.+...+.++.+... . .|.. ++.|+-....
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGSP 255 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCCH
Confidence 888888999999987776544433 2 2322 4666655443
No 409
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.51 E-value=0.097 Score=52.86 Aligned_cols=87 Identities=21% Similarity=0.350 Sum_probs=48.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCc---c---
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTP---N--- 285 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~---~--- 285 (1007)
.-++|.|.+|+|||+|+..+.+..... ..+++. +++.... +.++.+++...-..+.. ..+.. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-iGer~~E---v~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-IGERGRE---VTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-ESECHHH---HHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee-ccccchh---HHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 578899999999999999999976432 224443 3322221 55555555332111110 00000 0
Q ss_pred --hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 286 --LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 286 --~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
..-.+.+++ +++++|+++||+...
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHH
Confidence 111222333 689999999998433
No 410
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.50 E-value=0.092 Score=56.60 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.|-++|..+-...+++-|+|.+|+|||+||..++-.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 344556544456689999999999999999887753
No 411
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.49 E-value=0.031 Score=55.13 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...|.|+|++|+||||+|++++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999986
No 412
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.49 E-value=0.061 Score=50.42 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=25.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEE
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFV 250 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 250 (1007)
++|.|+|..|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999987644 4433333
No 413
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.48 E-value=0.69 Score=52.82 Aligned_cols=71 Identities=27% Similarity=0.293 Sum_probs=41.6
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh-cccCceEEEEecchhhhccCcHHHHHHHHHHHH
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF-REFEGKCFVANVREESEKEGVLVRLRERILSEI 274 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 274 (1007)
.|...-...|-+++. +-....++.|.|.+|+|||++|..++.... .+-..++|+. . ... ..++...++...
T Consensus 175 ~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l-----Em~-~~~l~~Rl~~~~ 246 (421)
T TIGR03600 175 TGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L-----EMS-AEQLGERLLASK 246 (421)
T ss_pred cceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C-----CCC-HHHHHHHHHHHH
Confidence 344444444444443 323446888999999999999999997654 2222344543 1 222 555666655543
No 414
>PRK05439 pantothenate kinase; Provisional
Probab=94.48 E-value=0.088 Score=56.17 Aligned_cols=30 Identities=33% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 213 LPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
....-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886643
No 415
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.47 E-value=0.1 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998875
No 416
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.47 E-value=1 Score=48.68 Aligned_cols=48 Identities=33% Similarity=0.393 Sum_probs=32.6
Q ss_pred EEEcCCCChhHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCchHH
Q 037332 346 IYKVNGLENHEAFKLFCYYAFKGNHGP-EDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 346 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal 393 (1007)
.++|++++++|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764332222 223344556666668998654
No 417
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.43 E-value=0.071 Score=58.58 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCccchhhHHHHHHHHhccC--------C----CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG--------L----PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|.+..++.+..++... . ...+.|.++|++|+|||++|+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 45889988888887776420 0 113678999999999999999999876543
No 418
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.40 E-value=0.55 Score=55.02 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
..+.++|....+.++.+.+..-...-..|.|+|..|+||+++|+++...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 4468999999888887766432222345789999999999999997664
No 419
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.39 E-value=0.047 Score=53.85 Aligned_cols=26 Identities=46% Similarity=0.498 Sum_probs=22.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.38 E-value=0.51 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|++++|+.|+||||++.+++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998764
No 421
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.37 E-value=8.1 Score=41.40 Aligned_cols=158 Identities=6% Similarity=0.066 Sum_probs=85.9
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--------c-cC-ceEEEEecchhhhccCcHHHHHHHHHH
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--------E-FE-GKCFVANVREESEKEGVLVRLRERILS 272 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~ 272 (1007)
+.+.+.+..+ .-.++..++|..|.||+++|+++.+.+-. . .+ ...++. ..+ .... +.++. ++..
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~-vd~Ir-~l~~ 79 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLS-KSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCC-HHHHH-HHHH
Confidence 3344444322 23467789999999999999999988611 1 11 111221 000 1111 11211 1111
Q ss_pred HHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCCCCCCeEEEEeCC-hhhHhh-cCcccEEE
Q 037332 273 EILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGPGSKIIVTTRD-KRVLDN-FGVSNIYK 348 (1007)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~ 348 (1007)
.+.-.. .-.+++=++|+|+++.... ...++..+....+++.+|++|.+ ..+... .....+++
T Consensus 80 ~~~~~~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 80 KLYFSS--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred HhccCC--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 111110 0014666888999875543 55666666555667777765544 344433 23357899
Q ss_pred cCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCC
Q 037332 349 VNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANG 388 (1007)
Q Consensus 349 l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 388 (1007)
+.++++++..+.+.... .+ ++.+..++...+|
T Consensus 146 f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSN 177 (299)
T ss_pred CCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCC
Confidence 99999999987776431 11 1334555556665
No 422
>PRK13947 shikimate kinase; Provisional
Probab=94.35 E-value=0.032 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988643
No 423
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.33 E-value=0.11 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 424
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.18 Score=54.38 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=54.6
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccc--
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIK-- 280 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-- 280 (1007)
.++-+.|-.+--.-.+|.|-|-+|||||||..+++.++..+. .+.++.. +.+ ..++. --+..+......
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EES-----~~Qik-lRA~RL~~~~~~l~ 150 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EES-----LQQIK-LRADRLGLPTNNLY 150 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC--CcC-----HHHHH-HHHHHhCCCccceE
Confidence 344455533323456899999999999999999999998776 5666642 111 22221 111222211111
Q ss_pred ccC-cchHHHHHHHhCCCcEEEEEecCC
Q 037332 281 IRT-PNLSECIKKRLRQMDVFIVLDDVN 307 (1007)
Q Consensus 281 ~~~-~~~~~~l~~~l~~kr~LlVlDdv~ 307 (1007)
... .++.+.++..-+.+.-++|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 111 223333444445677899999874
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.29 E-value=0.11 Score=57.17 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=56.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
...+-+-|||..|.|||.|+-.+|+.+..+-..++-+. .+ +.++.+.+...- +. .+....+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh-------~F--m~~vh~~l~~~~-~~------~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH-------EF--MLDVHSRLHQLR-GQ------DDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc-------HH--HHHHHHHHHHHh-CC------CccHHHHHHH
Confidence 34678999999999999999999997533211111000 00 333333332221 11 2334555566
Q ss_pred hCCCcEEEEEecC--CCchh---hHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 294 LRQMDVFIVLDDV--NKVGQ---LDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 294 l~~kr~LlVlDdv--~~~~~---~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
+.++..||.||.+ .|..+ +..+...+- ..|. |||+|-|.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 6677779999975 33333 444443332 3565 55555444
No 426
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.23 E-value=0.47 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
...|+++|++|+|||||...+..+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 356789999999999999998753
No 427
>PRK14528 adenylate kinase; Provisional
Probab=94.23 E-value=0.12 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998764
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.038 Score=51.31 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 429
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.20 E-value=0.04 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 430
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.18 E-value=0.59 Score=54.47 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++|....+.++.+.+..-......|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999888888877665433344568899999999999999998853
No 431
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.17 E-value=0.12 Score=47.74 Aligned_cols=10 Identities=10% Similarity=0.364 Sum_probs=3.4
Q ss_pred cCCCCCEEec
Q 037332 815 HLERLRNLKL 824 (1007)
Q Consensus 815 ~l~~L~~L~l 824 (1007)
++++|+.+.+
T Consensus 56 ~~~~l~~i~~ 65 (129)
T PF13306_consen 56 NCKSLESITF 65 (129)
T ss_dssp T-TT-EEEEE
T ss_pred cccccccccc
Confidence 3334444444
No 432
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.17 E-value=0.087 Score=54.35 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
.++...+....++..+|+|.|.||+||+||.-++..++.++=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 456666666667789999999999999999999998875543
No 433
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.17 E-value=0.084 Score=58.13 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=55.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEE-EecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFV-ANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
..|.|.|+.|+||||+++++.+.+.... +.+++. .+..+... .+ ...+.. ................++..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~-~~~~~~-----~~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GS-PDDLLP-----PAQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CC-Cceeec-----ccccccCCCccCHHHHHHHhh
Confidence 4688999999999999999988765433 233332 21111100 00 000000 000010111234667888899
Q ss_pred CCCcEEEEEecCCCchhhHHHhc
Q 037332 295 RQMDVFIVLDDVNKVGQLDYLAG 317 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~~~~l~~ 317 (1007)
+..+=.|+++.+.+.+.++....
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHH
Confidence 99999999999999988775443
No 434
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.15 E-value=0.17 Score=52.58 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh----cccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCc--
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF----REFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTP-- 284 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~-- 284 (1007)
-+-++|.|-.|+|||+|+..+.+... .+-+.++|+ .+++-..+ +.++.+.+...-.-... ..+..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~-~IGeR~re---v~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA-AMGITMED---ARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE-EeccccHH---HHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 35789999999999999999887643 122334444 44443322 55555555442111100 00000
Q ss_pred ------chHHHHHHHh--C-CCcEEEEEecCCCchh
Q 037332 285 ------NLSECIKKRL--R-QMDVFIVLDDVNKVGQ 311 (1007)
Q Consensus 285 ------~~~~~l~~~l--~-~kr~LlVlDdv~~~~~ 311 (1007)
-..-.+.+++ + ++++|+++||+....+
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 1123345555 2 6899999999865443
No 435
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.14 E-value=0.034 Score=54.80 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 436
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.11 E-value=0.07 Score=53.75 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=28.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
....+|+|+|++|+||||+|+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999999775432234444
No 437
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.08 E-value=0.075 Score=52.75 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEec
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANV 253 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 253 (1007)
.|+|+|-||+||||+|..+..++..+-...+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777765543333444443
No 438
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.07 E-value=0.018 Score=34.31 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=15.4
Q ss_pred CCCEEeccCCCCCCCchhhCC
Q 037332 888 SLTELDLKDCGIREIPQDIGS 908 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~lp~~l~~ 908 (1007)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877776554
No 439
>PRK01184 hypothetical protein; Provisional
Probab=94.07 E-value=0.099 Score=52.01 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=17.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.07 E-value=0.17 Score=52.59 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred eEEEEEEecCCCcHHHHH-HHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccc-------ccccC-cc-
Q 037332 216 FRIVGIWGMGGIGKTTIA-GAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDEN-------IKIRT-PN- 285 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~-~~- 285 (1007)
-+-++|.|.+|+|||+|| ..+.+.. +-+..+++..+++.... +.++.+.+...-.... ..... ..
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~e---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAST---VAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccchHH---HHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 357899999999999996 4555442 33455455545443222 5555555543211110 00000 00
Q ss_pred ----hHHHHHHHh--CCCcEEEEEecCCCchh-hHHHh
Q 037332 286 ----LSECIKKRL--RQMDVFIVLDDVNKVGQ-LDYLA 316 (1007)
Q Consensus 286 ----~~~~l~~~l--~~kr~LlVlDdv~~~~~-~~~l~ 316 (1007)
..-.+.+++ +++.+|+|+||+....+ ++++.
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 112233333 57899999999965543 44443
No 441
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.042 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=23.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 442
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.06 E-value=0.24 Score=49.24 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...++.|.|.+|.||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999998764
No 443
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.06 E-value=0.13 Score=57.67 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=52.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccC------
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRT------ 283 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~------ 283 (1007)
-+-++|.|.+|+|||+|+..+.....+. -+.++|. .+++-... +.++.+.+...-..... ..+.
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGeR~rE---v~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGERCRE---GEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-EeccCcHH---HHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 4578999999999999999998876432 3444444 44432222 55555555432111100 0000
Q ss_pred --cchHHHHHHHh---CCCcEEEEEecCCCch
Q 037332 284 --PNLSECIKKRL---RQMDVFIVLDDVNKVG 310 (1007)
Q Consensus 284 --~~~~~~l~~~l---~~kr~LlVlDdv~~~~ 310 (1007)
....-.+.+++ +++++|+++||+....
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 01123345555 4689999999995443
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.04 E-value=0.061 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhc
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
|.|.|.+|+|||||++++++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 445
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.03 E-value=0.059 Score=54.29 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVR 254 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 254 (1007)
.....|.++||+|.||||..+.++.++..++.. .++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 345688899999999999999999988776653 3444443
No 446
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.03 E-value=0.049 Score=52.85 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 195 LVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+||....+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467778888877766532222355679999999999999999984
No 447
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.02 E-value=0.14 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998875
No 448
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.99 E-value=0.24 Score=45.76 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=4.9
Q ss_pred cCCCCCCCEEEecc
Q 037332 837 LGSLKSLVYIEAER 850 (1007)
Q Consensus 837 l~~l~~L~~L~l~~ 850 (1007)
+.++++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 33444444444433
No 449
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.98 E-value=0.00076 Score=76.65 Aligned_cols=178 Identities=22% Similarity=0.195 Sum_probs=84.3
Q ss_pred ccccEEecCCccccccc----hhhhhccCccceEEecCCCCCccc----ccccccC-CCCceeccCccccc-----ccch
Q 037332 746 TTLVKLDLSYCTRLKSL----STSICKLRSLYWLYLNNCSKLESF----PEILEKM-ERLSYMDLSWTKIK-----ELKS 811 (1007)
Q Consensus 746 ~~L~~L~l~~~~~~~~l----~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~n~l~-----~l~~ 811 (1007)
..+..|.+.+|.....- -..+..+.+|+.|++++|+....- -..+... ..|++|++..+.++ .+..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34677777777655442 234555677777888776654211 1112222 44556666665555 2334
Q ss_pred hhhcCCCCCEEeccCCCCCc----cCCcccC----CCCCCCEEEeccccCccc-----ChhhhcCCC-CCEEEecCCCCC
Q 037332 812 SIDHLERLRNLKLRECSKLV----SLPENLG----SLKSLVYIEAERSAISQV-----PASIAHLNE-VKSLSFAGCRNL 877 (1007)
Q Consensus 812 ~~~~l~~L~~L~l~~~~~~~----~~~~~l~----~l~~L~~L~l~~~~l~~~-----~~~~~~l~~-L~~L~l~~~~~~ 877 (1007)
.+.....++.++++.|.... .++..+. ...++++|++.+|.++.. ...+...+. +..|++.+|...
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 44556666666666665421 1122222 344555555555555411 112222333 444555544432
Q ss_pred cC-----CcccCCC-CCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCc
Q 037332 878 VL-----PTLLSGL-CSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 878 ~~-----~~~~~~l-~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
.. ...+..+ +.++.++++.|.+++ +...+..++.+++|.+++|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11 1122222 444555555555442 2333444445555555555443
No 450
>PRK13949 shikimate kinase; Provisional
Probab=93.96 E-value=0.043 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
-|.|+|++|+||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 451
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.94 E-value=0.091 Score=50.80 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988765
No 452
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.93 E-value=0.038 Score=56.44 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
+|+|.|..|+||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 453
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.93 E-value=0.14 Score=55.46 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.++.+.+........+|+|.|.+|+|||||+..+...++..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443333467899999999999999999998877654
No 454
>PF13245 AAA_19: Part of AAA domain
Probab=93.90 E-value=0.17 Score=41.52 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=17.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+++.|.|++|.|||+++......
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999555554443
No 455
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.88 E-value=0.14 Score=56.93 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=49.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccc---cCcc-------
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKI---RTPN------- 285 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~------- 285 (1007)
-..++|.|..|+|||||++.++..... +..++ ..+++-... +.++.+.++..-....... ..++
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER~rE---v~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGERGRE---VKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCChHH---HHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 357999999999999999999864322 34444 334433222 4444444432211000000 0011
Q ss_pred ---hHHHHHHHh--CCCcEEEEEecCCCchh
Q 037332 286 ---LSECIKKRL--RQMDVFIVLDDVNKVGQ 311 (1007)
Q Consensus 286 ---~~~~l~~~l--~~kr~LlVlDdv~~~~~ 311 (1007)
..-.+.+++ +++++|+++||+....+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~ 266 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQ 266 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHH
Confidence 112244444 68999999999954433
No 456
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.88 E-value=0.18 Score=53.97 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=43.7
Q ss_pred CCCccchhhHHHHHHHHhccC----CCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCIG----LPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.+.++|+++.++++++.+... +..-+++.+.|+.|.||||||+.+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 357999999999999988643 2456899999999999999999998876554
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.84 E-value=0.04 Score=55.63 Aligned_cols=23 Identities=52% Similarity=0.689 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 458
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.82 E-value=0.045 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|.|.|.+|+||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 459
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.27 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.79 E-value=0.043 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.|+|+|+.|+|||||++.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865443
No 461
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.79 E-value=0.28 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998873
No 462
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.78 E-value=0.092 Score=55.30 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
..-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45679999999999999999998776444434556665
No 463
>PRK14526 adenylate kinase; Provisional
Probab=93.76 E-value=0.12 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998764
No 464
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.75 E-value=0.19 Score=56.61 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhc-cc------cc-----cc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILD-EN------IK-----IR 282 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~------~~-----~~ 282 (1007)
.-+-++|.|.+|+|||||+..+...+.+....++.+..+++-... +.++.+.+...-.- .. .. .+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrE---v~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTRE---GNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchH---HHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 346799999999999999999888754333334444445443322 45555555441100 00 00 00
Q ss_pred Cc--------chHHHHHHHhC--CC-cEEEEEecCCCch
Q 037332 283 TP--------NLSECIKKRLR--QM-DVFIVLDDVNKVG 310 (1007)
Q Consensus 283 ~~--------~~~~~l~~~l~--~k-r~LlVlDdv~~~~ 310 (1007)
.. ...-.+.++++ ++ ++||++||+....
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A 275 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFV 275 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHH
Confidence 01 11234566763 34 8999999995443
No 465
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.13 Score=49.55 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=61.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc-CcchHHHHHHHhC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR-TPNLSECIKKRLR 295 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~ 295 (1007)
.+++|+|..|.|||||++.++..+. .....+++... .... .. .....+.+ .-... .. .+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~-~~~~~~~i----~~~~q-lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LP-LEELRRRI----GYVPQ-LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CC-HHHHHhce----EEEee-CCHHHHHHHHHHHHHh
Confidence 6899999999999999999987553 23444554321 1100 00 11111110 00000 00 0111222444445
Q ss_pred CCcEEEEEecCC---CchhhHHHhcCCCCC-CCCCeEEEEeCChhhHhhcCcccEEEc
Q 037332 296 QMDVFIVLDDVN---KVGQLDYLAGGLDQF-GPGSKIIVTTRDKRVLDNFGVSNIYKV 349 (1007)
Q Consensus 296 ~kr~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtR~~~v~~~~~~~~~~~l 349 (1007)
..+-++++|+.. |.+....+...+... ..+..++++|.+....... .++++.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 557789999874 222222332222111 2256788888887766543 2455544
No 466
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.73 E-value=0.13 Score=54.93 Aligned_cols=107 Identities=20% Similarity=0.098 Sum_probs=55.1
Q ss_pred HHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccc--cc
Q 037332 204 QIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDEN--IK 280 (1007)
Q Consensus 204 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~ 280 (1007)
.|-..|. .+-+.-+++-|+|+.|+||||||..+.......-...+|+..-+. . -...++.+...+..-- .+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~----l--d~~~a~~lGvdl~rllv~~P 113 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHA----L--DPEYAESLGVDLDRLLVVQP 113 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---------HHHHHHTT--GGGEEEEE-
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCccc----c--hhhHHHhcCccccceEEecC
Confidence 4445553 222456799999999999999999999877666555667652111 1 1222333322222110 01
Q ss_pred ccCcchHHHHHHHhCC-CcEEEEEecCCCchhhHHHh
Q 037332 281 IRTPNLSECIKKRLRQ-MDVFIVLDDVNKVGQLDYLA 316 (1007)
Q Consensus 281 ~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~l~ 316 (1007)
...++....+.+.++. .--++|+|-|.....-.++-
T Consensus 114 ~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e 150 (322)
T PF00154_consen 114 DTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELE 150 (322)
T ss_dssp SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHT
T ss_pred CcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHh
Confidence 1113334445555543 34588999886544333333
No 467
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.73 E-value=0.33 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++++|.|+.|.|||||.+.+.-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998643
No 468
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.71 E-value=0.084 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999885
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.68 E-value=0.054 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 470
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.63 E-value=0.055 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
|.|+|++|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 471
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.63 E-value=0.23 Score=51.64 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.|-++|..+-....++.|.|.+|+|||++|..+......+-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555555456789999999999999999988765434445566665
No 472
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.58 E-value=0.046 Score=30.11 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=4.6
Q ss_pred cCEEEccCCCCccc
Q 037332 912 LEKIDLSGNNFETL 925 (1007)
Q Consensus 912 L~~L~L~~n~l~~l 925 (1007)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 473
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.57 E-value=0.12 Score=54.70 Aligned_cols=44 Identities=36% Similarity=0.348 Sum_probs=35.8
Q ss_pred HhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 208 LLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 208 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.+..+-+..+++.|+|.+|+|||++|.++......+...++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33344466789999999999999999999998877777777775
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.57 E-value=0.056 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|.|.|.+|+||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999983
No 475
>PRK14529 adenylate kinase; Provisional
Probab=93.57 E-value=0.24 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhhh
Q 037332 219 VGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 219 v~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
|.|.|++|+||||+|+.++.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 77899999999999999998763
No 476
>PRK13948 shikimate kinase; Provisional
Probab=93.55 E-value=0.061 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+.|.++|+.|+||||+++.+..++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346889999999999999999998764
No 477
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.55 E-value=0.13 Score=57.35 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhc-----cCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 199 NSRVEQIKSLLC-----IGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 199 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+-+.++..||. ...-+.++..|.|++|+||||..+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345666777776 333456899999999999999999998764
No 478
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.54 E-value=0.45 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+++.|.|.+|.||||+++.+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 588899999999999999998766543
No 479
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.52 E-value=0.052 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998863
No 480
>PRK13946 shikimate kinase; Provisional
Probab=93.47 E-value=0.058 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.|.+.|++|+||||+|+.++.++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999987
No 481
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.45 E-value=0.13 Score=57.13 Aligned_cols=34 Identities=18% Similarity=-0.030 Sum_probs=27.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKC 248 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 248 (1007)
....+.|.|.||.|||++.+++.+.++..-..++
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~ 54 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVL 54 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEE
Confidence 3467889999999999999999998776544333
No 482
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.41 E-value=0.079 Score=52.65 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCF 249 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 249 (1007)
.+++.|+|+.|+|||||++++......+|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4689999999999999999999988877853333
No 483
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.39 E-value=0.43 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh--cccCceEEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF--REFEGKCFVA 251 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 251 (1007)
-++|+++|+.|+||||-..+++.+.. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999976555555543 3333344543
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.38 E-value=0.24 Score=51.39 Aligned_cols=37 Identities=41% Similarity=0.378 Sum_probs=24.9
Q ss_pred hHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 200 SRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 200 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+.+.+..++... .+..|+|++|.||||++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3455565555332 278899999999998887777765
No 485
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.36 E-value=0.18 Score=53.50 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988776554
No 486
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.33 E-value=0.11 Score=58.34 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=34.2
Q ss_pred CccchhhHHHHHHHHhc-------cC-----C--CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 194 GLVGLNSRVEQIKSLLC-------IG-----L--PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.+||.+..++.+...+. .. + .....+.++|++|+|||++|+.++..+..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 47788877776654431 10 0 11356889999999999999999987643
No 487
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.32 E-value=0.17 Score=54.15 Aligned_cols=52 Identities=17% Similarity=0.062 Sum_probs=36.8
Q ss_pred CCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
|..++.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++..+...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333444554555566677776432 4688999999999999999999876443
No 488
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.31 E-value=0.33 Score=48.67 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.-.+++|.|..|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 489
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.31 E-value=0.33 Score=55.85 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=61.0
Q ss_pred cchhhH-HHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHH
Q 037332 196 VGLNSR-VEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEI 274 (1007)
Q Consensus 196 vGr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 274 (1007)
.|...+ ++.+..++.. ...+|.|.|+.|.||||+..++.+.+...-...+-+.+-. .+. +..+ .+.
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv----E~~-~~~~-----~q~ 290 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV----EYQ-IEGI-----GQI 290 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe----eee-cCCC-----ceE
Confidence 454443 3444444432 2358999999999999999988887643322223232111 111 1000 000
Q ss_pred hcccccccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHh
Q 037332 275 LDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLA 316 (1007)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~ 316 (1007)
. -...........++..|+..+=.|++.++.+.+......
T Consensus 291 ~--v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 291 Q--VNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred E--EccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 0 000011346688899999999999999999998755543
No 490
>PRK13975 thymidylate kinase; Provisional
Probab=93.30 E-value=0.073 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 491
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.30 E-value=0.19 Score=45.24 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=33.7
Q ss_pred CccchhhHHHHHHHHh----cc-CCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 194 GLVGLNSRVEQIKSLL----CI-GLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L----~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+++|-.-..+.+.+++ .. .+...-|++.+|.+|+|||.+|+.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4566665555555544 32 23457799999999999999999988863
No 492
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.30 E-value=0.093 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987655
No 493
>PLN02674 adenylate kinase
Probab=93.27 E-value=0.54 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..|.|.|++|+||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999998764
No 494
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.25 E-value=0.081 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|..|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 495
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=93.21 E-value=0.22 Score=45.09 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=50.7
Q ss_pred cEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCc
Q 037332 20 DVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKN 82 (1007)
Q Consensus 20 dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~ 82 (1007)
.|||.|. .|. .++..+...|+..|+.+..=. ....|..+.+.+.++..++..+|++++|+
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899998 553 688899999998888755443 66899999999999999999999999985
No 496
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.21 E-value=0.1 Score=59.78 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 212 GLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 212 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++..+|+|.|..|.||||||+.+...+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44567899999999999999999998764
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.16 E-value=0.11 Score=54.84 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
++|+|+|.+|+|||||+.++...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988776 455554
No 498
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.53 Score=46.84 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCcEEEEEecCCCchhhHHH---hcCCCC-CCCCCeEEEEeCChhhHhhcCcccEE
Q 037332 287 SECIKKRLRQMDVFIVLDDVNKVGQLDYL---AGGLDQ-FGPGSKIIVTTRDKRVLDNFGVSNIY 347 (1007)
Q Consensus 287 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~l---~~~~~~-~~~gs~iliTtR~~~v~~~~~~~~~~ 347 (1007)
...+.+.+--++-+.|||..++--+.+.+ ...... ..+|+-++|.|-.+.++.....+.+|
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34455555557789999987654443332 211111 14577788888888888877655554
No 499
>PRK14530 adenylate kinase; Provisional
Probab=93.14 E-value=0.072 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|.|+|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 500
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.14 E-value=0.41 Score=52.30 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHhccCC-------CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 203 EQIKSLLCIGL-------PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 203 ~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
++|.++|..+. ....||..+|.-|.||||.|-++++.+++
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 45666664311 23678999999999999999999998766
Done!