Query 037332
Match_columns 1007
No_of_seqs 779 out of 5881
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.7E-46 6E-51 360.0 11.6 177 6-184 23-201 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.5E-45 1.2E-49 346.5 12.1 170 15-189 5-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-41 7.8E-46 397.5 23.5 299 196-507 131-473 (549)
4 3rgz_A Protein brassinosteroid 100.0 4.4E-39 1.5E-43 396.2 28.5 434 555-992 219-741 (768)
5 3rgz_A Protein brassinosteroid 100.0 1.2E-38 4.1E-43 392.3 31.1 438 540-984 156-707 (768)
6 3t6q_A CD180 antigen; protein- 100.0 1.2E-37 4.2E-42 375.2 36.0 452 538-994 36-563 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-36 8.2E-41 363.9 30.8 441 539-994 36-561 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-34 1.1E-38 350.1 37.3 451 539-994 29-625 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 1.4E-34 4.7E-39 346.2 30.3 416 539-965 32-529 (570)
10 4eco_A Uncharacterized protein 100.0 5E-36 1.7E-40 360.2 17.6 342 599-945 195-599 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-34 5E-39 359.7 29.7 444 539-994 28-563 (844)
12 3sfz_A APAF-1, apoptotic pepti 100.0 4.7E-35 1.6E-39 383.8 25.4 307 186-505 117-452 (1249)
13 3t6q_A CD180 antigen; protein- 100.0 8.4E-34 2.9E-38 341.7 34.0 419 559-983 33-526 (606)
14 1vt4_I APAF-1 related killer D 100.0 4.7E-35 1.6E-39 344.1 20.6 278 193-498 128-436 (1221)
15 4eco_A Uncharacterized protein 100.0 1.1E-34 3.9E-39 348.4 24.3 343 618-965 192-598 (636)
16 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-34 2.2E-38 342.7 30.7 415 539-965 60-556 (606)
17 4ecn_A Leucine-rich repeat pro 100.0 2.1E-34 7.3E-39 350.4 25.9 398 559-966 323-839 (876)
18 4ecn_A Leucine-rich repeat pro 100.0 1.2E-34 4.2E-39 352.5 21.3 348 597-950 435-844 (876)
19 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-34 2.8E-38 337.6 27.4 409 539-953 30-493 (549)
20 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-32 4.4E-37 336.0 36.0 309 657-965 250-620 (680)
21 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-33 2.8E-37 343.9 32.4 391 539-945 8-463 (844)
22 2z63_A TOLL-like receptor 4, v 100.0 5E-33 1.7E-37 332.6 28.8 403 539-951 56-536 (570)
23 2z7x_B TOLL-like receptor 1, v 100.0 1E-33 3.5E-38 334.0 19.9 417 539-969 25-480 (520)
24 1z6t_A APAF-1, apoptotic prote 100.0 5.1E-33 1.7E-37 332.6 24.0 303 186-502 117-449 (591)
25 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-32 2E-36 319.1 26.7 437 539-994 4-484 (520)
26 1o6v_A Internalin A; bacterial 100.0 6.9E-31 2.4E-35 304.4 33.0 346 557-947 44-389 (466)
27 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-31 5.1E-36 318.1 25.9 399 539-950 54-514 (549)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-31 1.3E-35 314.6 22.6 399 539-950 56-514 (562)
29 3v47_A TOLL-like receptor 5B a 100.0 2.6E-30 8.8E-35 299.7 28.4 353 585-951 28-413 (455)
30 1jl5_A Outer protein YOPM; leu 100.0 6.1E-30 2.1E-34 293.3 25.8 365 552-980 27-421 (454)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-29 1.2E-33 297.8 31.7 377 587-972 52-512 (562)
32 1jl5_A Outer protein YOPM; leu 100.0 7.3E-30 2.5E-34 292.6 24.7 380 540-971 39-433 (454)
33 1o6v_A Internalin A; bacterial 100.0 5.8E-29 2E-33 288.3 31.3 340 587-965 46-386 (466)
34 3v47_A TOLL-like receptor 5B a 100.0 1.3E-28 4.4E-33 285.4 29.9 345 559-923 30-408 (455)
35 4fmz_A Internalin; leucine ric 100.0 2E-28 6.7E-33 272.7 29.2 301 588-946 45-346 (347)
36 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-28 1.1E-32 295.2 30.0 421 539-964 56-577 (635)
37 4fmz_A Internalin; leucine ric 100.0 4.7E-28 1.6E-32 269.6 28.2 301 607-965 42-344 (347)
38 2id5_A Lingo-1, leucine rich r 100.0 4.5E-28 1.5E-32 282.3 26.4 314 590-948 14-335 (477)
39 3o6n_A APL1; leucine-rich repe 100.0 1.1E-27 3.7E-32 271.1 25.0 306 608-947 44-353 (390)
40 3o6n_A APL1; leucine-rich repe 100.0 1.6E-27 5.6E-32 269.6 26.5 306 629-965 42-350 (390)
41 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-27 4.8E-32 273.9 24.9 334 553-951 36-392 (457)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-27 6.3E-32 272.9 24.6 332 539-929 46-394 (457)
43 3oja_B Anopheles plasmodium-re 100.0 4.8E-27 1.6E-31 280.6 26.9 307 607-947 49-359 (597)
44 4g8a_A TOLL-like receptor 4; l 100.0 8.2E-27 2.8E-31 282.9 28.7 428 559-994 52-583 (635)
45 3h16_A TIR protein; bacteria T 100.0 9.4E-30 3.2E-34 242.7 1.9 129 3-132 5-134 (154)
46 3oja_B Anopheles plasmodium-re 100.0 4.1E-27 1.4E-31 281.2 24.9 304 587-923 51-358 (597)
47 2id5_A Lingo-1, leucine rich r 99.9 1.4E-26 4.6E-31 269.8 26.6 309 611-965 13-331 (477)
48 1xku_A Decorin; proteoglycan, 99.9 9.8E-26 3.3E-30 248.7 28.5 285 610-944 32-330 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 6.8E-26 2.3E-30 250.1 23.9 284 610-944 34-331 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.8E-30 244.7 18.0 244 723-967 50-304 (313)
51 1xku_A Decorin; proteoglycan, 99.9 8.2E-24 2.8E-28 233.3 27.5 283 588-921 32-330 (330)
52 1z7x_W Ribonuclease inhibitor; 99.9 3.1E-27 1.1E-31 274.3 -0.1 367 586-967 2-440 (461)
53 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-25 9.5E-30 242.3 13.7 211 738-950 93-308 (313)
54 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-24 1.6E-28 235.4 23.6 282 588-921 34-331 (332)
55 4fcg_A Uncharacterized protein 99.9 3.1E-24 1.1E-28 235.3 18.7 218 747-966 82-310 (328)
56 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-23 1.1E-27 244.5 24.5 265 588-954 41-305 (622)
57 4fcg_A Uncharacterized protein 99.9 2.6E-23 9E-28 228.0 20.8 220 723-945 81-313 (328)
58 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-22 5.8E-27 238.2 26.5 230 725-985 83-312 (622)
59 3ogk_B Coronatine-insensitive 99.9 1.1E-24 3.8E-29 261.4 5.8 361 587-948 112-528 (592)
60 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-25 9.4E-30 257.9 -1.6 204 745-948 198-442 (461)
61 2z66_A Variable lymphocyte rec 99.9 2.3E-22 7.8E-27 219.2 19.6 234 715-949 19-264 (306)
62 3ub2_A TOLL/interleukin-1 rece 99.9 5.7E-25 2E-29 205.3 -1.5 134 13-151 5-145 (146)
63 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.7E-27 225.0 18.1 161 790-950 145-318 (353)
64 2z80_A TOLL-like receptor 2, v 99.9 3E-22 1E-26 222.9 18.7 268 591-923 35-314 (353)
65 2z66_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 218.0 18.1 238 726-965 10-259 (306)
66 3zyj_A Leucine-rich repeat-con 99.9 8.3E-22 2.8E-26 226.3 22.2 232 715-947 55-293 (440)
67 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-22 2.6E-26 212.6 20.1 223 726-950 14-242 (285)
68 3zyi_A Leucine-rich repeat-con 99.9 8.6E-22 2.9E-26 227.0 21.5 232 715-947 66-304 (452)
69 3zyi_A Leucine-rich repeat-con 99.9 7.4E-21 2.5E-25 219.2 23.3 238 725-965 56-301 (452)
70 3zyj_A Leucine-rich repeat-con 99.9 6.8E-21 2.3E-25 218.7 22.7 238 725-965 45-290 (440)
71 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-21 1.4E-25 206.8 18.8 237 715-951 23-266 (285)
72 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-23 3.3E-27 222.9 5.8 150 794-944 120-273 (317)
73 3ogk_B Coronatine-insensitive 99.9 9.4E-23 3.2E-27 244.6 6.1 385 555-943 108-548 (592)
74 1wwl_A Monocyte differentiatio 99.9 1.4E-22 4.6E-27 221.2 6.5 219 725-947 65-310 (312)
75 3o53_A Protein LRIM1, AGAP0063 99.9 8.8E-22 3E-26 215.3 10.3 238 721-968 32-276 (317)
76 3oja_A Leucine-rich immune mol 99.8 1.7E-21 5.8E-26 225.5 13.0 229 721-959 32-264 (487)
77 2p1m_B Transport inhibitor res 99.8 5.2E-23 1.8E-27 247.0 0.0 393 553-945 60-518 (594)
78 1wwl_A Monocyte differentiatio 99.8 1.1E-21 3.7E-26 214.0 9.2 236 724-966 44-305 (312)
79 2z62_A TOLL-like receptor 4, v 99.8 3.5E-20 1.2E-24 198.4 18.5 220 729-950 13-241 (276)
80 3oja_A Leucine-rich immune mol 99.8 6.6E-21 2.3E-25 220.5 12.3 169 746-941 99-270 (487)
81 1p9a_G Platelet glycoprotein I 99.8 5E-19 1.7E-23 190.1 19.5 196 723-922 10-207 (290)
82 1p9a_G Platelet glycoprotein I 99.8 7.2E-19 2.5E-23 188.8 20.7 202 742-948 6-210 (290)
83 2z62_A TOLL-like receptor 4, v 99.8 3.5E-19 1.2E-23 190.6 17.5 209 715-923 19-237 (276)
84 2o6q_A Variable lymphocyte rec 99.8 1.6E-18 5.4E-23 184.6 20.5 200 725-950 18-222 (270)
85 2xwt_C Thyrotropin receptor; s 99.8 3.7E-19 1.3E-23 185.9 15.2 208 713-944 21-237 (239)
86 1h6u_A Internalin H; cell adhe 99.8 1.2E-18 4.1E-23 189.2 19.5 195 742-947 37-231 (308)
87 2js7_A Myeloid differentiation 99.8 1.6E-20 5.3E-25 178.6 4.0 101 14-116 12-117 (160)
88 2o6q_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 182.4 22.1 192 771-965 17-216 (270)
89 1fyx_A TOLL-like receptor 2; b 99.8 6.8E-21 2.3E-25 179.4 1.2 100 15-116 2-107 (149)
90 2j67_A TOLL like receptor 10; 99.8 1.9E-20 6.5E-25 180.7 3.4 102 13-116 30-136 (178)
91 2p1m_B Transport inhibitor res 99.8 7.7E-21 2.6E-25 228.2 -0.3 358 607-966 64-518 (594)
92 2xwt_C Thyrotropin receptor; s 99.8 6.2E-19 2.1E-23 184.2 13.9 195 771-966 32-238 (239)
93 4glp_A Monocyte differentiatio 99.8 3.8E-19 1.3E-23 193.7 12.6 201 744-947 89-308 (310)
94 1h6u_A Internalin H; cell adhe 99.8 2.9E-18 9.9E-23 186.1 18.1 195 723-928 41-235 (308)
95 1t3g_A X-linked interleukin-1 99.8 1.6E-19 5.4E-24 171.5 6.7 100 17-116 1-114 (159)
96 2ca6_A RAN GTPase-activating p 99.8 2.5E-19 8.5E-24 202.0 8.9 228 723-950 32-320 (386)
97 3rfs_A Internalin B, repeat mo 99.8 3.1E-18 1.1E-22 182.5 16.0 205 766-980 37-245 (272)
98 3rfs_A Internalin B, repeat mo 99.8 4.1E-18 1.4E-22 181.6 16.7 224 726-960 22-249 (272)
99 2ca6_A RAN GTPase-activating p 99.8 1.6E-19 5.6E-24 203.5 4.4 238 728-965 14-314 (386)
100 2ast_B S-phase kinase-associat 99.8 6.2E-19 2.1E-23 194.9 8.7 229 723-954 70-314 (336)
101 4glp_A Monocyte differentiatio 99.7 3.7E-18 1.3E-22 185.9 10.8 216 747-964 65-304 (310)
102 2ast_B S-phase kinase-associat 99.7 2.1E-18 7.3E-23 190.6 8.5 195 611-851 49-257 (336)
103 3cvr_A Invasion plasmid antige 99.7 8.4E-18 2.9E-22 195.6 13.1 186 747-955 60-252 (571)
104 4ay9_X Follicle-stimulating ho 99.7 6.8E-17 2.3E-21 179.0 17.6 236 590-851 12-256 (350)
105 3cvr_A Invasion plasmid antige 99.7 6.6E-17 2.3E-21 188.0 16.6 186 724-932 60-253 (571)
106 3goz_A Leucine-rich repeat-con 99.7 5.5E-18 1.9E-22 188.9 7.2 228 721-948 20-299 (362)
107 4ay9_X Follicle-stimulating ho 99.7 7.6E-17 2.6E-21 178.6 16.0 228 713-943 19-256 (350)
108 3m19_A Variable lymphocyte rec 99.7 2.8E-16 9.6E-21 165.2 18.0 174 725-923 16-192 (251)
109 3goz_A Leucine-rich repeat-con 99.7 5.5E-18 1.9E-22 188.9 5.1 179 746-924 80-298 (362)
110 3m19_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 163.8 19.1 177 771-950 15-196 (251)
111 1h6t_A Internalin B; cell adhe 99.7 2.2E-16 7.4E-21 169.7 17.2 173 766-947 42-214 (291)
112 1dce_A Protein (RAB geranylger 99.7 2.3E-18 7.9E-23 201.7 -1.2 202 724-939 350-566 (567)
113 1h6t_A Internalin B; cell adhe 99.7 4E-16 1.4E-20 167.6 16.3 175 742-926 42-216 (291)
114 1m9s_A Internalin B; cell inva 99.7 4.4E-16 1.5E-20 183.4 16.8 193 745-948 20-212 (605)
115 1xeu_A Internalin C; cellular 99.6 1E-15 3.5E-20 161.6 12.6 149 792-948 39-187 (263)
116 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.7E-20 177.9 15.9 187 729-926 27-213 (605)
117 2qen_A Walker-type ATPase; unk 99.6 1.1E-14 3.9E-19 161.6 21.3 289 186-499 5-349 (350)
118 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.5E-20 152.7 12.3 150 792-946 42-194 (197)
119 2o6s_A Variable lymphocyte rec 99.6 6.3E-15 2.2E-19 150.0 15.6 158 794-957 28-189 (208)
120 4ezg_A Putative uncharacterize 99.6 3.1E-15 1.1E-19 150.6 12.6 152 767-923 41-194 (197)
121 3e6j_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 150.7 15.9 153 796-950 21-176 (229)
122 1dce_A Protein (RAB geranylger 99.6 4.8E-17 1.6E-21 190.5 -2.0 194 743-950 346-550 (567)
123 2fna_A Conserved hypothetical 99.6 1.9E-14 6.4E-19 160.3 18.4 291 186-498 6-356 (357)
124 2o6s_A Variable lymphocyte rec 99.6 5.9E-15 2E-19 150.2 12.8 177 727-934 11-190 (208)
125 2v9t_B SLIT homolog 2 protein 99.6 1.9E-14 6.5E-19 147.4 14.9 148 798-947 15-166 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-14 8E-19 146.8 14.4 150 798-949 15-169 (220)
127 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.9E-19 153.6 11.9 173 744-927 17-189 (263)
128 2xot_A Amphoterin-induced prot 99.5 3E-14 1E-18 158.3 14.6 150 796-945 41-201 (361)
129 1w5s_A Origin recognition comp 99.5 8.9E-14 3E-18 158.1 18.7 280 191-483 20-371 (412)
130 2v9t_B SLIT homolog 2 protein 99.5 7.4E-14 2.5E-18 143.0 14.3 130 726-857 14-144 (220)
131 2xot_A Amphoterin-induced prot 99.5 4E-14 1.4E-18 157.3 11.8 177 726-923 21-202 (361)
132 3e6j_A Variable lymphocyte rec 99.5 2.3E-13 7.7E-18 140.4 16.0 130 794-923 40-172 (229)
133 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.3E-18 139.6 14.5 150 726-900 14-166 (220)
134 4b8c_D Glucose-repressible alc 99.5 9.6E-15 3.3E-19 176.7 4.9 190 770-964 173-369 (727)
135 2ell_A Acidic leucine-rich nuc 99.5 9.9E-14 3.4E-18 135.7 10.9 128 817-945 24-159 (168)
136 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.7E-18 135.5 11.0 133 794-928 24-165 (168)
137 2qby_B CDC6 homolog 3, cell di 99.4 8.8E-12 3E-16 140.1 25.5 274 193-483 20-339 (384)
138 4b8c_D Glucose-repressible alc 99.4 2.1E-14 7.1E-19 173.8 4.2 150 725-876 175-328 (727)
139 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.3E-18 131.2 8.7 125 817-942 17-149 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.4 7.6E-13 2.6E-17 130.3 8.6 130 791-944 16-151 (176)
141 2je0_A Acidic leucine-rich nuc 99.4 8E-13 2.7E-17 126.3 8.4 124 794-919 17-149 (149)
142 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.7E-17 129.2 9.0 126 837-964 15-150 (176)
143 2qby_A CDC6 homolog 1, cell di 99.3 8.7E-12 3E-16 140.3 16.8 283 190-483 17-348 (386)
144 1w8a_A SLIT protein; signaling 99.3 6.2E-12 2.1E-16 125.6 13.7 109 842-950 30-143 (192)
145 2v1u_A Cell division control p 99.3 1.2E-11 4.2E-16 139.2 17.6 278 191-483 17-351 (387)
146 1fnn_A CDC6P, cell division co 99.3 2.7E-11 9.2E-16 136.4 19.3 304 191-505 15-387 (389)
147 1ds9_A Outer arm dynein; leuci 99.3 1.2E-13 4E-18 139.2 -3.0 133 808-945 39-184 (198)
148 2wfh_A SLIT homolog 2 protein 99.3 2.7E-11 9.4E-16 120.8 14.2 107 841-947 31-140 (193)
149 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.6E-16 123.2 11.5 127 726-854 11-139 (192)
150 3sb4_A Hypothetical leucine ri 99.3 8.8E-12 3E-16 136.5 10.6 197 745-944 100-308 (329)
151 1ds9_A Outer arm dynein; leuci 99.2 6.5E-14 2.2E-18 141.1 -7.6 118 832-951 39-158 (198)
152 2o6r_A Variable lymphocyte rec 99.2 9.1E-11 3.1E-15 115.5 14.5 90 861-950 49-141 (177)
153 2wfh_A SLIT homolog 2 protein 99.2 5.5E-11 1.9E-15 118.6 12.3 126 726-854 13-139 (193)
154 3sb4_A Hypothetical leucine ri 99.2 3.9E-11 1.3E-15 131.3 11.4 234 723-964 25-304 (329)
155 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 114.7 11.9 127 726-854 10-137 (177)
156 1njg_A DNA polymerase III subu 99.2 3.3E-10 1.1E-14 118.4 15.8 196 191-399 21-230 (250)
157 2r9u_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 110.7 11.2 103 844-948 15-120 (174)
158 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 110.1 11.1 106 843-950 11-119 (170)
159 2chg_A Replication factor C sm 99.1 1E-09 3.4E-14 112.8 14.8 184 191-396 15-203 (226)
160 4fs7_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 113.9 22.8 125 813-943 249-376 (394)
161 4fdw_A Leucine rich hypothetic 99.0 8.5E-09 2.9E-13 115.1 19.6 212 725-947 137-359 (401)
162 4fdw_A Leucine rich hypothetic 99.0 1E-08 3.4E-13 114.5 19.4 97 588-688 136-235 (401)
163 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.7E-14 104.4 11.9 105 797-926 15-121 (174)
164 1sxj_B Activator 1 37 kDa subu 98.9 3.1E-09 1.1E-13 116.0 12.3 186 191-398 19-211 (323)
165 3un9_A NLR family member X1; l 98.9 1.6E-10 5.3E-15 127.9 1.7 130 794-923 101-252 (372)
166 3g39_A Variable lymphocyte rec 98.9 4.8E-09 1.6E-13 102.1 11.8 82 842-923 31-115 (170)
167 4fs7_A Uncharacterized protein 98.9 2.3E-07 7.8E-12 104.0 23.9 148 790-943 204-353 (394)
168 1iqp_A RFCS; clamp loader, ext 98.8 2.5E-08 8.5E-13 109.0 15.2 186 190-397 22-212 (327)
169 3un9_A NLR family member X1; l 98.8 4.3E-10 1.5E-14 124.3 1.0 154 794-947 72-253 (372)
170 1hqc_A RUVB; extended AAA-ATPa 98.7 2.3E-07 7.9E-12 101.0 18.3 255 190-487 9-302 (324)
171 2ifg_A High affinity nerve gro 98.7 2.5E-08 8.4E-13 110.0 9.9 101 822-923 13-116 (347)
172 2ra8_A Uncharacterized protein 98.7 2.9E-08 9.9E-13 108.6 10.3 136 808-946 163-320 (362)
173 2chq_A Replication factor C sm 98.6 2.3E-07 7.8E-12 100.9 14.4 182 191-395 15-202 (319)
174 2ra8_A Uncharacterized protein 98.6 3.2E-08 1.1E-12 108.3 7.3 81 862-944 250-341 (362)
175 1jbk_A CLPB protein; beta barr 98.6 2.7E-07 9.1E-12 91.9 13.0 50 191-242 20-69 (195)
176 1jr3_A DNA polymerase III subu 98.6 4.3E-07 1.5E-11 101.1 15.9 194 191-397 14-221 (373)
177 2ifg_A High affinity nerve gro 98.6 1E-07 3.6E-12 104.9 9.3 103 727-830 12-116 (347)
178 3te6_A Regulatory protein SIR3 98.5 4.5E-07 1.5E-11 96.0 12.6 165 194-365 21-211 (318)
179 3pfi_A Holliday junction ATP-d 98.5 3.5E-06 1.2E-10 92.2 19.9 262 191-497 27-327 (338)
180 3bos_A Putative DNA replicatio 98.5 2.5E-07 8.4E-12 96.0 9.8 173 191-396 26-216 (242)
181 3h4m_A Proteasome-activating n 98.5 2.5E-07 8.4E-12 98.7 9.8 173 190-389 14-222 (285)
182 4gt6_A Cell surface protein; l 98.5 1E-05 3.5E-10 90.5 23.1 125 813-943 261-388 (394)
183 3d8b_A Fidgetin-like protein 1 98.5 3.4E-06 1.2E-10 92.5 18.0 185 189-398 80-296 (357)
184 1sxj_A Activator 1 95 kDa subu 98.5 1.6E-06 5.5E-11 100.3 15.9 191 191-397 37-253 (516)
185 1d2n_A N-ethylmaleimide-sensit 98.4 6.1E-06 2.1E-10 87.0 18.7 197 193-418 33-264 (272)
186 4gt6_A Cell surface protein; l 98.4 1.7E-05 5.9E-10 88.7 23.3 108 834-944 258-368 (394)
187 2z4s_A Chromosomal replication 98.4 1E-06 3.5E-11 99.4 12.2 181 193-394 105-303 (440)
188 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.3E-06 1.8E-10 87.0 16.5 177 192-391 5-215 (262)
189 3eie_A Vacuolar protein sortin 98.4 2E-06 6.8E-11 93.1 13.0 174 191-389 16-219 (322)
190 1sxj_D Activator 1 41 kDa subu 98.4 1.1E-06 3.6E-11 97.1 10.9 194 190-395 34-233 (353)
191 1l8q_A Chromosomal replication 98.3 4E-06 1.4E-10 91.0 14.3 176 192-391 10-202 (324)
192 3uk6_A RUVB-like 2; hexameric 98.3 8.9E-06 3.1E-10 90.1 17.3 194 192-394 43-300 (368)
193 2qp9_X Vacuolar protein sortin 98.3 8.5E-06 2.9E-10 89.2 16.7 174 191-389 49-252 (355)
194 2p65_A Hypothetical protein PF 98.3 3.8E-06 1.3E-10 82.8 12.3 50 191-242 20-69 (187)
195 1xwi_A SKD1 protein; VPS4B, AA 98.3 6.3E-06 2.2E-10 88.8 14.9 181 192-396 11-222 (322)
196 3b9p_A CG5977-PA, isoform A; A 98.3 1.4E-05 4.6E-10 85.6 17.1 183 189-396 17-232 (297)
197 2zan_A Vacuolar protein sortin 98.3 1E-05 3.4E-10 91.4 16.7 179 189-390 130-337 (444)
198 3syl_A Protein CBBX; photosynt 98.3 5.8E-06 2E-10 89.1 13.7 149 194-366 32-218 (309)
199 1sxj_E Activator 1 40 kDa subu 98.2 5.1E-06 1.8E-10 91.5 13.1 194 191-394 12-234 (354)
200 4h09_A Hypothetical leucine ri 98.2 0.00016 5.3E-09 80.4 24.7 128 811-942 211-342 (379)
201 3vfd_A Spastin; ATPase, microt 98.2 7.2E-06 2.4E-10 91.3 13.2 183 190-397 112-326 (389)
202 3pvs_A Replication-associated 98.2 9.1E-06 3.1E-10 91.3 12.9 177 189-394 22-212 (447)
203 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.9E-11 86.4 4.6 117 811-945 30-163 (185)
204 3cf0_A Transitional endoplasmi 98.1 4.4E-05 1.5E-09 81.5 16.6 152 192-365 14-199 (301)
205 3u61_B DNA polymerase accessor 98.1 3.1E-05 1E-09 84.0 14.9 177 190-392 23-211 (324)
206 4h09_A Hypothetical leucine ri 98.0 0.00048 1.6E-08 76.4 23.2 109 790-902 236-347 (379)
207 1a5t_A Delta prime, HOLB; zinc 98.0 0.00012 4.2E-09 79.3 17.0 173 199-397 8-205 (334)
208 4b4t_J 26S protease regulatory 98.0 7.6E-05 2.6E-09 81.0 15.0 172 192-390 147-354 (405)
209 1io0_A Tropomodulin; LRR prote 98.0 2.8E-06 9.4E-11 83.6 3.5 119 787-923 29-164 (185)
210 3pxg_A Negative regulator of g 98.0 7.5E-05 2.6E-09 84.9 15.6 148 191-365 178-338 (468)
211 3ec2_A DNA replication protein 97.9 3E-05 1E-09 75.8 9.6 118 198-335 19-143 (180)
212 3hu3_A Transitional endoplasmi 97.9 3.4E-05 1.1E-09 87.6 11.2 152 193-366 204-386 (489)
213 3n70_A Transport activator; si 97.9 1.4E-05 5E-10 74.8 6.8 47 194-240 2-48 (145)
214 1qvr_A CLPB protein; coiled co 97.9 0.0001 3.5E-09 90.7 15.7 154 190-364 167-344 (854)
215 4b4t_H 26S protease regulatory 97.9 0.00013 4.5E-09 80.1 14.4 172 192-390 208-415 (467)
216 2w58_A DNAI, primosome compone 97.9 5.1E-05 1.8E-09 75.8 10.5 60 192-251 24-89 (202)
217 1sxj_C Activator 1 40 kDa subu 97.8 0.00013 4.6E-09 79.4 14.4 180 192-393 24-208 (340)
218 4b4t_L 26S protease subunit RP 97.8 0.00034 1.2E-08 77.3 17.0 172 192-390 180-387 (437)
219 4b4t_M 26S protease regulatory 97.8 7.1E-05 2.4E-09 82.6 11.2 173 191-390 179-387 (434)
220 1in4_A RUVB, holliday junction 97.8 0.00083 2.8E-08 72.7 19.0 259 192-494 24-321 (334)
221 2r62_A Cell division protease 97.7 1.9E-05 6.7E-10 82.9 4.9 153 191-365 9-196 (268)
222 1ofh_A ATP-dependent HSL prote 97.7 0.00017 5.9E-09 77.5 12.6 49 193-241 15-75 (310)
223 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00024 8.1E-09 86.6 15.2 154 191-365 184-362 (758)
224 4b4t_K 26S protease regulatory 97.7 0.0002 6.9E-09 78.9 13.1 172 192-390 171-379 (428)
225 2ce7_A Cell division protein F 97.7 0.00033 1.1E-08 78.7 14.6 174 192-390 15-221 (476)
226 4fcw_A Chaperone protein CLPB; 97.7 0.00015 5E-09 78.1 11.2 49 194-242 18-73 (311)
227 1lv7_A FTSH; alpha/beta domain 97.7 0.00027 9.1E-09 73.6 12.6 153 191-365 10-195 (257)
228 4b4t_I 26S protease regulatory 97.7 0.00061 2.1E-08 74.1 15.4 172 192-390 181-388 (437)
229 3rw6_A Nuclear RNA export fact 97.7 2.5E-05 8.6E-10 80.6 4.3 67 767-834 167-237 (267)
230 2bjv_A PSP operon transcriptio 97.6 0.00028 9.6E-09 73.8 12.5 49 193-241 6-54 (265)
231 3pxi_A Negative regulator of g 97.6 0.00036 1.2E-08 84.8 15.0 148 191-365 178-338 (758)
232 3rw6_A Nuclear RNA export fact 97.6 4.1E-05 1.4E-09 79.0 5.2 64 886-950 169-237 (267)
233 3t15_A Ribulose bisphosphate c 97.5 0.00041 1.4E-08 73.5 11.6 28 215-242 35-62 (293)
234 3e4g_A ATP synthase subunit S, 97.5 0.00013 4.3E-09 69.6 6.2 85 864-948 61-154 (176)
235 3co5_A Putative two-component 97.5 3E-05 1E-09 72.4 1.9 49 193-241 4-52 (143)
236 3e4g_A ATP synthase subunit S, 97.5 8.2E-05 2.8E-09 70.9 4.8 85 747-831 62-153 (176)
237 1ojl_A Transcriptional regulat 97.4 0.00036 1.2E-08 74.3 9.8 48 193-240 2-49 (304)
238 2gno_A DNA polymerase III, gam 97.4 0.0005 1.7E-08 72.9 10.6 146 197-365 1-152 (305)
239 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0011 3.9E-08 74.8 13.5 172 190-390 28-236 (499)
240 2c9o_A RUVB-like 1; hexameric 97.4 0.0027 9.4E-08 71.8 16.6 50 192-241 36-88 (456)
241 2kjq_A DNAA-related protein; s 97.3 0.00025 8.5E-09 66.4 5.6 28 215-242 35-62 (149)
242 1ixz_A ATP-dependent metallopr 97.3 0.0018 6E-08 67.1 12.4 152 192-365 15-199 (254)
243 3cf2_A TER ATPase, transitiona 97.2 0.00072 2.5E-08 80.5 10.0 171 193-390 204-407 (806)
244 3pxi_A Negative regulator of g 97.2 0.001 3.5E-08 80.8 11.5 150 193-365 491-675 (758)
245 2x8a_A Nuclear valosin-contain 97.2 0.0025 8.6E-08 66.5 12.9 151 193-365 10-191 (274)
246 3m6a_A ATP-dependent protease 97.1 0.0048 1.6E-07 71.3 15.8 49 195-243 83-135 (543)
247 1iy2_A ATP-dependent metallopr 97.1 0.0023 7.9E-08 67.2 11.1 152 192-365 39-223 (278)
248 1eiw_A Hypothetical protein MT 97.0 0.00086 2.9E-08 58.0 6.1 72 17-111 3-74 (111)
249 1ypw_A Transitional endoplasmi 96.8 0.0025 8.7E-08 77.2 10.3 149 193-365 204-385 (806)
250 2qgz_A Helicase loader, putati 96.8 0.0024 8.3E-08 67.9 8.1 52 200-251 135-188 (308)
251 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0027 9.1E-08 77.3 8.1 48 193-240 458-512 (758)
252 1pgv_A TMD-1, tropomodulin TMD 96.6 0.002 6.7E-08 62.6 5.4 59 885-943 96-167 (197)
253 1g5t_A COB(I)alamin adenosyltr 96.4 0.0031 1.1E-07 60.8 5.2 134 217-352 29-180 (196)
254 3lw7_A Adenylate kinase relate 96.3 0.014 5E-07 56.1 10.1 20 217-236 2-21 (179)
255 3cf2_A TER ATPase, transitiona 96.3 0.0067 2.3E-07 72.2 8.4 151 193-365 477-661 (806)
256 1qvr_A CLPB protein; coiled co 96.0 0.013 4.4E-07 72.0 9.4 49 194-242 559-614 (854)
257 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0052 1.8E-07 64.2 4.9 25 215-239 122-146 (331)
258 2cvh_A DNA repair and recombin 95.9 0.011 3.8E-07 59.4 7.3 25 214-238 18-42 (220)
259 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0065 2.2E-07 59.0 4.6 87 836-922 65-169 (197)
260 3jvv_A Twitching mobility prot 95.8 0.017 5.9E-07 62.3 8.2 111 217-339 124-235 (356)
261 3rfe_A Platelet glycoprotein I 95.8 0.013 4.6E-07 52.9 6.3 54 891-946 12-68 (130)
262 1zu4_A FTSY; GTPase, signal re 95.7 0.038 1.3E-06 58.7 10.5 36 215-251 104-139 (320)
263 3ice_A Transcription terminati 95.7 0.0059 2E-07 65.1 3.7 40 216-255 174-214 (422)
264 1vma_A Cell division protein F 95.6 0.085 2.9E-06 55.5 12.7 45 199-243 81-131 (306)
265 1rz3_A Hypothetical protein rb 95.5 0.023 7.8E-07 56.1 7.3 44 198-241 3-47 (201)
266 3c8u_A Fructokinase; YP_612366 95.5 0.015 5.1E-07 57.9 5.8 41 201-241 7-47 (208)
267 3hws_A ATP-dependent CLP prote 95.4 0.012 3.9E-07 64.6 5.3 47 195-241 17-76 (363)
268 2r44_A Uncharacterized protein 95.4 0.018 6.2E-07 62.1 6.7 47 193-243 27-73 (331)
269 3sr0_A Adenylate kinase; phosp 95.4 0.049 1.7E-06 53.7 9.1 23 218-240 2-24 (206)
270 1sky_E F1-ATPase, F1-ATP synth 95.4 0.02 6.9E-07 63.3 6.9 51 217-270 152-202 (473)
271 1jr3_D DNA polymerase III, del 95.4 0.14 4.8E-06 55.3 13.7 155 215-395 17-183 (343)
272 2eyu_A Twitching motility prot 95.3 0.016 5.4E-07 59.7 5.6 113 215-338 24-136 (261)
273 3umf_A Adenylate kinase; rossm 95.3 0.018 6.1E-07 57.2 5.6 27 214-240 27-53 (217)
274 1j8m_F SRP54, signal recogniti 95.2 0.097 3.3E-06 54.9 11.4 28 216-243 98-125 (297)
275 1qhx_A CPT, protein (chloramph 95.1 0.0096 3.3E-07 57.5 3.2 25 217-241 4-28 (178)
276 3e70_C DPA, signal recognition 95.1 0.091 3.1E-06 55.9 10.9 29 215-243 128-156 (328)
277 1ypw_A Transitional endoplasmi 95.0 0.004 1.4E-07 75.5 -0.2 51 193-243 477-538 (806)
278 2b8t_A Thymidine kinase; deoxy 95.0 0.02 6.7E-07 57.1 4.9 109 216-335 12-126 (223)
279 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.025 8.7E-07 63.9 6.3 45 193-241 22-66 (500)
280 3hr8_A Protein RECA; alpha and 94.8 0.038 1.3E-06 59.4 7.0 49 203-251 47-96 (356)
281 3kb2_A SPBC2 prophage-derived 94.8 0.014 4.8E-07 55.9 3.3 25 217-241 2-26 (173)
282 1xp8_A RECA protein, recombina 94.8 0.053 1.8E-06 58.7 8.0 50 202-251 59-109 (366)
283 3vaa_A Shikimate kinase, SK; s 94.7 0.016 5.5E-07 57.2 3.5 25 216-240 25-49 (199)
284 1odf_A YGR205W, hypothetical 3 94.7 0.036 1.2E-06 58.0 6.3 30 213-242 28-57 (290)
285 2xxa_A Signal recognition part 94.7 0.22 7.4E-06 55.2 12.8 43 201-243 78-127 (433)
286 3trf_A Shikimate kinase, SK; a 94.6 0.017 5.8E-07 56.2 3.3 24 217-240 6-29 (185)
287 2ga8_A Hypothetical 39.9 kDa p 94.6 0.021 7.2E-07 60.7 4.1 49 196-244 2-52 (359)
288 3dm5_A SRP54, signal recogniti 94.6 0.15 5E-06 56.3 11.0 29 215-243 99-127 (443)
289 2yhs_A FTSY, cell division pro 94.5 0.13 4.3E-06 57.4 10.3 36 215-251 292-327 (503)
290 1fx0_B ATP synthase beta chain 94.5 0.055 1.9E-06 59.9 7.4 53 216-272 165-218 (498)
291 1um8_A ATP-dependent CLP prote 94.5 0.027 9.3E-07 61.9 5.0 25 217-241 73-97 (376)
292 1n0w_A DNA repair protein RAD5 94.5 0.027 9.4E-07 57.5 4.7 26 215-240 23-48 (243)
293 2orw_A Thymidine kinase; TMTK, 94.4 0.027 9.2E-07 54.6 4.3 25 217-241 4-28 (184)
294 2ck3_D ATP synthase subunit be 94.4 0.066 2.3E-06 59.0 7.7 53 216-272 153-206 (482)
295 2q6t_A DNAB replication FORK h 94.4 0.22 7.5E-06 55.8 12.2 62 204-273 189-251 (444)
296 1kht_A Adenylate kinase; phosp 94.4 0.062 2.1E-06 52.4 6.9 26 217-242 4-29 (192)
297 1v5w_A DMC1, meiotic recombina 94.4 0.063 2.2E-06 57.9 7.4 36 205-240 111-146 (343)
298 3rfe_A Platelet glycoprotein I 94.3 0.049 1.7E-06 49.2 5.5 53 591-644 12-67 (130)
299 1nks_A Adenylate kinase; therm 94.3 0.039 1.3E-06 53.9 5.3 26 217-242 2-27 (194)
300 3b9q_A Chloroplast SRP recepto 94.3 0.18 6.2E-06 53.0 10.7 28 215-242 99-126 (302)
301 1ly1_A Polynucleotide kinase; 94.2 0.026 8.8E-07 54.6 3.6 22 217-238 3-24 (181)
302 3uie_A Adenylyl-sulfate kinase 94.2 0.045 1.5E-06 53.9 5.5 27 215-241 24-50 (200)
303 3tlx_A Adenylate kinase 2; str 94.2 0.038 1.3E-06 56.3 5.1 26 215-240 28-53 (243)
304 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.071 2.4E-06 57.0 7.3 106 217-337 172-277 (330)
305 1tue_A Replication protein E1; 94.2 0.042 1.4E-06 53.2 4.8 46 196-242 39-84 (212)
306 1zuh_A Shikimate kinase; alpha 94.1 0.026 9E-07 53.8 3.4 26 216-241 7-32 (168)
307 2px0_A Flagellar biosynthesis 94.1 0.14 4.6E-06 53.8 9.1 28 215-242 104-131 (296)
308 2ewv_A Twitching motility prot 94.1 0.1 3.5E-06 56.9 8.4 112 215-337 135-246 (372)
309 1xjc_A MOBB protein homolog; s 94.1 0.044 1.5E-06 51.8 4.8 28 216-243 4-31 (169)
310 1zp6_A Hypothetical protein AT 94.1 0.027 9.3E-07 55.0 3.6 24 216-239 9-32 (191)
311 2z43_A DNA repair and recombin 94.1 0.039 1.3E-06 59.1 5.0 27 215-241 106-132 (324)
312 1kag_A SKI, shikimate kinase I 94.1 0.022 7.4E-07 54.7 2.7 25 217-241 5-29 (173)
313 2yvu_A Probable adenylyl-sulfa 94.0 0.049 1.7E-06 52.9 5.2 28 215-242 12-39 (186)
314 2rhm_A Putative kinase; P-loop 94.0 0.035 1.2E-06 54.3 4.2 25 216-240 5-29 (193)
315 1ex7_A Guanylate kinase; subst 94.0 0.023 7.7E-07 54.9 2.6 28 217-244 2-29 (186)
316 3iij_A Coilin-interacting nucl 94.0 0.022 7.5E-07 55.1 2.6 25 216-240 11-35 (180)
317 3hyn_A Putative signal transdu 93.9 0.25 8.4E-06 45.9 9.1 101 26-131 27-137 (189)
318 3tqc_A Pantothenate kinase; bi 93.9 0.069 2.4E-06 56.5 6.3 47 195-241 69-117 (321)
319 1g8p_A Magnesium-chelatase 38 93.9 0.027 9.2E-07 61.3 3.3 49 191-241 22-70 (350)
320 1kgd_A CASK, peripheral plasma 93.9 0.029 1E-06 54.2 3.2 25 217-241 6-30 (180)
321 3fwy_A Light-independent proto 93.9 0.055 1.9E-06 57.3 5.5 30 214-243 46-75 (314)
322 3l0o_A Transcription terminati 93.9 0.014 4.9E-07 62.0 1.0 50 205-255 165-215 (427)
323 2ze6_A Isopentenyl transferase 93.9 0.033 1.1E-06 57.2 3.8 24 217-240 2-25 (253)
324 3kl4_A SRP54, signal recogniti 93.8 0.27 9.2E-06 54.2 11.1 29 215-243 96-124 (433)
325 2og2_A Putative signal recogni 93.8 0.27 9.1E-06 52.8 10.8 28 215-242 156-183 (359)
326 2v3c_C SRP54, signal recogniti 93.8 0.18 6E-06 55.9 9.6 28 216-243 99-126 (432)
327 2jaq_A Deoxyguanosine kinase; 93.7 0.033 1.1E-06 55.1 3.4 24 218-241 2-25 (205)
328 3io5_A Recombination and repai 93.7 0.054 1.8E-06 56.4 4.9 34 218-251 30-65 (333)
329 1via_A Shikimate kinase; struc 93.7 0.033 1.1E-06 53.5 3.3 24 218-241 6-29 (175)
330 3t61_A Gluconokinase; PSI-biol 93.7 0.031 1.1E-06 55.2 3.0 25 216-240 18-42 (202)
331 1g41_A Heat shock protein HSLU 93.6 0.06 2E-06 59.4 5.5 49 194-242 16-76 (444)
332 1knq_A Gluconate kinase; ALFA/ 93.6 0.042 1.4E-06 52.8 3.8 25 216-240 8-32 (175)
333 3a00_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 54.3 2.9 28 217-244 2-29 (186)
334 2iyv_A Shikimate kinase, SK; t 93.5 0.03 1E-06 54.3 2.6 23 218-240 4-26 (184)
335 1gvn_B Zeta; postsegregational 93.5 0.074 2.5E-06 55.7 5.8 26 215-240 32-57 (287)
336 4eun_A Thermoresistant glucoki 93.5 0.041 1.4E-06 54.2 3.5 25 216-240 29-53 (200)
337 2c95_A Adenylate kinase 1; tra 93.5 0.041 1.4E-06 54.0 3.5 25 216-240 9-33 (196)
338 2r6a_A DNAB helicase, replicat 93.4 0.53 1.8E-05 52.9 13.0 37 215-251 202-239 (454)
339 3gmt_A Adenylate kinase; ssgci 93.4 0.15 5.1E-06 50.8 7.4 24 217-240 9-32 (230)
340 3cm0_A Adenylate kinase; ATP-b 93.4 0.046 1.6E-06 53.0 3.8 25 216-240 4-28 (186)
341 3p32_A Probable GTPase RV1496/ 93.4 0.13 4.4E-06 55.8 7.6 41 202-242 65-105 (355)
342 1tev_A UMP-CMP kinase; ploop, 93.4 0.047 1.6E-06 53.4 3.8 24 217-240 4-27 (196)
343 3tau_A Guanylate kinase, GMP k 93.4 0.044 1.5E-06 54.4 3.6 26 216-241 8-33 (208)
344 2plr_A DTMP kinase, probable t 93.4 0.069 2.3E-06 53.1 5.1 27 217-243 5-31 (213)
345 1ukz_A Uridylate kinase; trans 93.3 0.05 1.7E-06 53.7 3.9 26 215-240 14-39 (203)
346 1e6c_A Shikimate kinase; phosp 93.3 0.035 1.2E-06 53.1 2.7 24 217-240 3-26 (173)
347 1y63_A LMAJ004144AAA protein; 93.3 0.046 1.6E-06 53.0 3.6 24 216-239 10-33 (184)
348 1nn5_A Similar to deoxythymidy 93.3 0.069 2.4E-06 53.2 4.9 28 216-243 9-36 (215)
349 2bdt_A BH3686; alpha-beta prot 93.3 0.047 1.6E-06 53.2 3.6 22 217-238 3-24 (189)
350 2bwj_A Adenylate kinase 5; pho 93.3 0.044 1.5E-06 53.9 3.4 25 217-241 13-37 (199)
351 2pt5_A Shikimate kinase, SK; a 93.3 0.049 1.7E-06 51.8 3.6 24 218-241 2-25 (168)
352 2qor_A Guanylate kinase; phosp 93.2 0.037 1.3E-06 54.8 2.7 26 216-241 12-37 (204)
353 3bh0_A DNAB-like replicative h 93.2 0.19 6.5E-06 53.4 8.5 46 205-251 58-103 (315)
354 2vli_A Antibiotic resistance p 93.2 0.035 1.2E-06 53.8 2.5 25 217-241 6-30 (183)
355 1qf9_A UMP/CMP kinase, protein 93.1 0.056 1.9E-06 52.8 3.9 25 216-240 6-30 (194)
356 3ney_A 55 kDa erythrocyte memb 93.1 0.049 1.7E-06 53.0 3.2 27 215-241 18-44 (197)
357 2zr9_A Protein RECA, recombina 93.1 0.099 3.4E-06 56.3 6.0 48 204-251 48-96 (349)
358 2cdn_A Adenylate kinase; phosp 93.1 0.054 1.8E-06 53.4 3.6 25 216-240 20-44 (201)
359 2qt1_A Nicotinamide riboside k 93.0 0.057 2E-06 53.5 3.8 27 214-240 19-45 (207)
360 1uf9_A TT1252 protein; P-loop, 93.0 0.061 2.1E-06 53.0 4.0 26 214-239 6-31 (203)
361 4gp7_A Metallophosphoesterase; 93.0 0.044 1.5E-06 52.4 2.8 22 216-237 9-30 (171)
362 3upu_A ATP-dependent DNA helic 93.0 0.32 1.1E-05 54.8 10.4 28 217-244 46-73 (459)
363 1cke_A CK, MSSA, protein (cyti 92.9 0.055 1.9E-06 54.5 3.6 24 217-240 6-29 (227)
364 2if2_A Dephospho-COA kinase; a 92.9 0.054 1.9E-06 53.5 3.5 21 218-238 3-23 (204)
365 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.06 2E-06 55.6 3.9 26 216-241 4-29 (260)
366 1ye8_A Protein THEP1, hypothet 92.9 0.053 1.8E-06 52.1 3.2 24 218-241 2-25 (178)
367 1aky_A Adenylate kinase; ATP:A 92.9 0.052 1.8E-06 54.4 3.3 24 217-240 5-28 (220)
368 1uj2_A Uridine-cytidine kinase 92.9 0.061 2.1E-06 55.2 3.9 28 214-241 20-47 (252)
369 3tr0_A Guanylate kinase, GMP k 92.9 0.054 1.8E-06 53.5 3.4 24 217-240 8-31 (205)
370 2p5t_B PEZT; postsegregational 92.9 0.083 2.8E-06 54.2 4.9 27 215-241 31-57 (253)
371 2i1q_A DNA repair and recombin 92.8 0.096 3.3E-06 56.0 5.5 36 205-240 87-122 (322)
372 3e1s_A Exodeoxyribonuclease V, 92.8 0.4 1.4E-05 55.4 11.0 27 217-243 205-231 (574)
373 2wwf_A Thymidilate kinase, put 92.8 0.06 2E-06 53.5 3.6 28 216-243 10-37 (212)
374 3asz_A Uridine kinase; cytidin 92.8 0.065 2.2E-06 53.3 3.8 27 215-241 5-31 (211)
375 2pbr_A DTMP kinase, thymidylat 92.8 0.061 2.1E-06 52.6 3.6 25 218-242 2-26 (195)
376 2bbw_A Adenylate kinase 4, AK4 92.7 0.06 2.1E-06 55.0 3.6 25 216-240 27-51 (246)
377 2j41_A Guanylate kinase; GMP, 92.7 0.059 2E-06 53.3 3.5 25 216-240 6-30 (207)
378 2grj_A Dephospho-COA kinase; T 92.6 0.071 2.4E-06 51.9 3.7 26 215-240 11-36 (192)
379 1jjv_A Dephospho-COA kinase; P 92.5 0.066 2.3E-06 53.0 3.5 22 217-238 3-24 (206)
380 1rj9_A FTSY, signal recognitio 92.5 0.11 3.7E-06 54.8 5.1 29 215-243 101-129 (304)
381 1gtv_A TMK, thymidylate kinase 92.5 0.045 1.5E-06 54.6 2.1 25 218-242 2-26 (214)
382 2ffh_A Protein (FFH); SRP54, s 92.4 0.098 3.3E-06 57.6 4.9 29 215-243 97-125 (425)
383 2r2a_A Uncharacterized protein 92.4 0.24 8.3E-06 48.3 7.2 22 218-239 7-28 (199)
384 1zak_A Adenylate kinase; ATP:A 92.4 0.06 2E-06 54.1 2.9 26 216-241 5-30 (222)
385 1lvg_A Guanylate kinase, GMP k 92.4 0.055 1.9E-06 53.1 2.6 24 217-240 5-28 (198)
386 3ch4_B Pmkase, phosphomevalona 92.3 0.27 9.4E-06 47.5 7.4 26 215-240 10-35 (202)
387 1zd8_A GTP:AMP phosphotransfer 92.3 0.068 2.3E-06 53.9 3.3 25 216-240 7-31 (227)
388 4e22_A Cytidylate kinase; P-lo 92.3 0.07 2.4E-06 54.7 3.4 25 216-240 27-51 (252)
389 3nwj_A ATSK2; P loop, shikimat 92.3 0.057 2E-06 55.0 2.7 25 217-241 49-73 (250)
390 2pez_A Bifunctional 3'-phospho 92.3 0.088 3E-06 50.7 4.0 26 216-241 5-30 (179)
391 2w0m_A SSO2452; RECA, SSPF, un 92.3 0.1 3.5E-06 52.7 4.6 35 216-250 23-57 (235)
392 2z0h_A DTMP kinase, thymidylat 92.3 0.078 2.7E-06 51.9 3.6 25 218-242 2-26 (197)
393 3fb4_A Adenylate kinase; psych 92.3 0.077 2.6E-06 52.9 3.6 23 218-240 2-24 (216)
394 2dr3_A UPF0273 protein PH0284; 92.2 0.12 3.9E-06 52.8 5.0 37 215-251 22-58 (247)
395 2wsm_A Hydrogenase expression/ 92.2 0.15 5.1E-06 51.0 5.7 44 198-243 14-57 (221)
396 2hf9_A Probable hydrogenase ni 92.1 0.24 8.3E-06 49.6 7.2 29 215-243 37-65 (226)
397 2ck3_A ATP synthase subunit al 92.1 0.13 4.4E-06 57.2 5.3 90 217-309 163-274 (510)
398 3dzd_A Transcriptional regulat 92.1 1.6 5.5E-05 47.2 14.1 48 193-240 129-176 (368)
399 3aez_A Pantothenate kinase; tr 92.1 0.084 2.9E-06 55.8 3.7 28 214-241 88-115 (312)
400 1m7g_A Adenylylsulfate kinase; 92.0 0.099 3.4E-06 51.9 4.1 26 216-241 25-50 (211)
401 4a74_A DNA repair and recombin 92.0 0.1 3.4E-06 52.7 4.1 27 214-240 23-49 (231)
402 3dl0_A Adenylate kinase; phosp 92.0 0.082 2.8E-06 52.7 3.4 23 218-240 2-24 (216)
403 1u0j_A DNA replication protein 91.9 0.14 4.9E-06 52.0 5.1 39 201-239 89-127 (267)
404 3d3q_A TRNA delta(2)-isopenten 91.9 0.091 3.1E-06 55.7 3.8 25 217-241 8-32 (340)
405 4a1f_A DNAB helicase, replicat 91.9 0.29 9.8E-06 52.1 7.6 52 215-273 45-96 (338)
406 1htw_A HI0065; nucleotide-bind 91.9 0.14 4.9E-06 47.8 4.8 26 215-240 32-57 (158)
407 3r20_A Cytidylate kinase; stru 91.9 0.09 3.1E-06 52.7 3.5 24 217-240 10-33 (233)
408 2v54_A DTMP kinase, thymidylat 91.9 0.077 2.6E-06 52.3 3.1 24 217-240 5-28 (204)
409 1znw_A Guanylate kinase, GMP k 91.8 0.083 2.8E-06 52.3 3.2 25 216-240 20-44 (207)
410 1svm_A Large T antigen; AAA+ f 91.8 0.14 4.8E-06 55.5 5.3 38 203-240 156-193 (377)
411 2r9v_A ATP synthase subunit al 91.8 0.34 1.2E-05 53.7 8.2 88 217-309 176-279 (515)
412 2qe7_A ATP synthase subunit al 91.8 0.17 5.7E-06 56.1 5.8 88 216-308 162-265 (502)
413 3vr4_D V-type sodium ATPase su 91.8 0.26 8.8E-06 54.0 7.1 89 217-308 152-259 (465)
414 3be4_A Adenylate kinase; malar 91.7 0.087 3E-06 52.6 3.3 24 217-240 6-29 (217)
415 3k1j_A LON protease, ATP-depen 91.7 0.14 4.8E-06 60.0 5.5 47 193-243 41-87 (604)
416 1ny5_A Transcriptional regulat 91.7 1.7 5.8E-05 47.4 13.9 47 194-240 138-184 (387)
417 2jeo_A Uridine-cytidine kinase 91.7 0.1 3.5E-06 53.2 3.8 26 215-240 24-49 (245)
418 1np6_A Molybdopterin-guanine d 91.6 0.16 5.5E-06 48.4 4.8 27 216-242 6-32 (174)
419 1u94_A RECA protein, recombina 91.6 0.15 5E-06 55.0 5.1 48 204-251 50-98 (356)
420 3ake_A Cytidylate kinase; CMP 91.6 0.11 3.6E-06 51.5 3.6 24 218-241 4-27 (208)
421 1z6g_A Guanylate kinase; struc 91.5 0.073 2.5E-06 53.2 2.5 25 216-240 23-47 (218)
422 2f6r_A COA synthase, bifunctio 91.5 0.11 3.7E-06 54.3 3.8 24 215-238 74-97 (281)
423 3a8t_A Adenylate isopentenyltr 91.5 0.084 2.9E-06 55.7 2.9 25 216-240 40-64 (339)
424 3crm_A TRNA delta(2)-isopenten 91.5 0.099 3.4E-06 55.0 3.4 24 217-240 6-29 (323)
425 1e4v_A Adenylate kinase; trans 91.4 0.11 3.9E-06 51.6 3.7 23 218-240 2-24 (214)
426 2xb4_A Adenylate kinase; ATP-b 91.4 0.11 3.8E-06 52.1 3.6 23 218-240 2-24 (223)
427 2ehv_A Hypothetical protein PH 91.4 0.15 5.2E-06 52.1 4.8 24 216-239 30-53 (251)
428 1ak2_A Adenylate kinase isoenz 91.4 0.11 3.7E-06 52.6 3.5 25 217-241 17-41 (233)
429 2axn_A 6-phosphofructo-2-kinas 91.3 0.57 2E-05 53.4 9.8 30 215-244 34-63 (520)
430 1vht_A Dephospho-COA kinase; s 91.3 0.13 4.3E-06 51.4 3.9 23 216-238 4-26 (218)
431 1s96_A Guanylate kinase, GMP k 91.3 0.1 3.5E-06 52.0 3.2 26 216-241 16-41 (219)
432 2i3b_A HCR-ntpase, human cance 91.2 0.1 3.5E-06 50.6 3.1 24 218-241 3-26 (189)
433 2f1r_A Molybdopterin-guanine d 91.2 0.075 2.6E-06 50.5 2.0 26 217-242 3-28 (171)
434 2r8r_A Sensor protein; KDPD, P 91.2 0.18 6.2E-06 49.7 4.7 28 218-245 8-36 (228)
435 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 53.7 3.6 24 217-240 4-27 (322)
436 1fx0_A ATP synthase alpha chai 91.0 0.14 4.9E-06 56.7 4.3 89 216-309 163-267 (507)
437 1yrb_A ATP(GTP)binding protein 91.0 0.21 7.3E-06 51.4 5.5 27 215-241 13-39 (262)
438 3bgw_A DNAB-like replicative h 91.0 0.5 1.7E-05 52.6 8.7 37 214-250 195-231 (444)
439 2c61_A A-type ATP synthase non 90.9 0.31 1.1E-05 53.7 6.7 87 217-306 153-258 (469)
440 3end_A Light-independent proto 90.9 0.21 7.2E-06 52.9 5.4 30 214-243 39-68 (307)
441 3gqb_B V-type ATP synthase bet 90.8 0.28 9.5E-06 53.7 6.2 89 217-308 148-262 (464)
442 2j37_W Signal recognition part 90.7 0.4 1.4E-05 54.0 7.6 29 215-243 100-128 (504)
443 1cp2_A CP2, nitrogenase iron p 90.7 0.24 8.1E-06 51.3 5.5 27 217-243 2-28 (269)
444 1cr0_A DNA primase/helicase; R 90.7 0.21 7.1E-06 52.6 5.1 35 216-250 35-70 (296)
445 1puj_A YLQF, conserved hypothe 90.7 2.2 7.4E-05 44.2 12.8 24 215-238 119-142 (282)
446 1sq5_A Pantothenate kinase; P- 90.5 0.16 5.4E-06 53.8 4.0 28 214-241 78-105 (308)
447 1ls1_A Signal recognition part 90.5 0.23 7.9E-06 52.0 5.2 29 215-243 97-125 (295)
448 3hjn_A DTMP kinase, thymidylat 90.5 0.42 1.4E-05 46.6 6.7 32 218-249 2-33 (197)
449 3foz_A TRNA delta(2)-isopenten 90.5 0.15 5.2E-06 52.9 3.7 25 216-240 10-34 (316)
450 2p67_A LAO/AO transport system 90.4 0.43 1.5E-05 51.3 7.4 29 214-242 54-82 (341)
451 2qmh_A HPR kinase/phosphorylas 90.4 0.14 4.9E-06 49.2 3.0 24 217-240 35-58 (205)
452 1a7j_A Phosphoribulokinase; tr 90.3 0.094 3.2E-06 54.9 2.0 26 216-241 5-30 (290)
453 4hlc_A DTMP kinase, thymidylat 90.3 0.24 8.2E-06 48.7 4.8 29 217-245 3-31 (205)
454 3lnc_A Guanylate kinase, GMP k 90.3 0.092 3.2E-06 53.0 1.8 25 216-240 27-52 (231)
455 3b85_A Phosphate starvation-in 90.3 0.12 4.3E-06 50.9 2.7 23 217-239 23-45 (208)
456 2onk_A Molybdate/tungstate ABC 90.2 0.14 4.9E-06 51.7 3.2 25 214-239 23-47 (240)
457 2fz4_A DNA repair protein RAD2 90.1 2.3 7.7E-05 42.8 12.1 40 196-240 93-132 (237)
458 2pcj_A ABC transporter, lipopr 90.0 0.14 4.7E-06 51.3 2.8 22 217-238 31-52 (224)
459 1g8f_A Sulfate adenylyltransfe 90.0 0.24 8.3E-06 55.8 5.1 48 195-242 374-421 (511)
460 1nlf_A Regulatory protein REPA 90.0 0.28 9.5E-06 51.1 5.3 27 216-242 30-56 (279)
461 4eaq_A DTMP kinase, thymidylat 89.9 0.19 6.7E-06 50.4 3.9 28 215-242 25-52 (229)
462 1ltq_A Polynucleotide kinase; 89.9 0.17 5.9E-06 53.4 3.6 23 217-239 3-25 (301)
463 3tif_A Uncharacterized ABC tra 89.8 0.14 4.8E-06 51.7 2.7 23 216-238 31-53 (235)
464 2afh_E Nitrogenase iron protei 89.8 0.3 1E-05 51.2 5.3 27 217-243 3-29 (289)
465 1q57_A DNA primase/helicase; d 89.7 1.3 4.5E-05 50.4 11.1 38 214-251 240-278 (503)
466 1q3t_A Cytidylate kinase; nucl 89.6 0.2 6.7E-06 50.7 3.6 26 215-240 15-40 (236)
467 3oaa_A ATP synthase subunit al 89.6 0.58 2E-05 51.7 7.4 88 217-309 163-266 (513)
468 2qm8_A GTPase/ATPase; G protei 89.6 0.47 1.6E-05 50.8 6.7 29 214-242 53-81 (337)
469 2ocp_A DGK, deoxyguanosine kin 89.4 0.22 7.4E-06 50.6 3.8 26 216-241 2-27 (241)
470 2cbz_A Multidrug resistance-as 89.3 0.16 5.5E-06 51.3 2.7 25 216-240 31-55 (237)
471 3gfo_A Cobalt import ATP-bindi 89.3 0.16 5.5E-06 52.5 2.7 22 217-238 35-56 (275)
472 3eph_A TRNA isopentenyltransfe 89.2 0.23 7.9E-06 53.7 3.9 25 217-241 3-27 (409)
473 2d2e_A SUFC protein; ABC-ATPas 89.2 0.19 6.6E-06 51.2 3.2 23 217-239 30-52 (250)
474 3zvl_A Bifunctional polynucleo 89.2 0.17 5.8E-06 56.1 3.0 26 215-240 257-282 (416)
475 1oix_A RAS-related protein RAB 89.1 0.22 7.5E-06 48.4 3.5 24 216-239 29-52 (191)
476 2zts_A Putative uncharacterize 89.1 0.32 1.1E-05 49.6 4.9 36 215-250 29-65 (251)
477 1pzn_A RAD51, DNA repair and r 89.1 0.26 8.8E-06 53.1 4.3 34 207-240 122-155 (349)
478 1b0u_A Histidine permease; ABC 89.1 0.17 5.8E-06 52.0 2.7 24 216-239 32-55 (262)
479 2zu0_C Probable ATP-dependent 89.0 0.2 7E-06 51.6 3.2 24 216-239 46-69 (267)
480 1sgw_A Putative ABC transporte 88.9 0.15 5.2E-06 50.5 2.1 23 217-239 36-58 (214)
481 1ji0_A ABC transporter; ATP bi 88.9 0.18 6.1E-06 51.1 2.7 22 217-238 33-54 (240)
482 4g1u_C Hemin import ATP-bindin 88.9 0.18 6.1E-06 52.0 2.7 23 217-239 38-60 (266)
483 3fdi_A Uncharacterized protein 88.9 0.25 8.5E-06 48.4 3.7 25 217-241 7-31 (201)
484 2v9p_A Replication protein E1; 88.9 0.27 9.4E-06 51.4 4.2 27 214-240 124-150 (305)
485 2olj_A Amino acid ABC transpor 88.8 0.18 6.2E-06 51.7 2.7 24 216-239 50-73 (263)
486 1mv5_A LMRA, multidrug resista 88.8 0.2 6.8E-06 50.9 2.9 23 216-238 28-50 (243)
487 1g6h_A High-affinity branched- 88.8 0.18 6.3E-06 51.6 2.7 23 217-239 34-56 (257)
488 4edh_A DTMP kinase, thymidylat 88.8 0.41 1.4E-05 47.3 5.2 28 216-243 6-33 (213)
489 2pze_A Cystic fibrosis transme 88.7 0.19 6.4E-06 50.5 2.7 24 217-240 35-58 (229)
490 2ff7_A Alpha-hemolysin translo 88.6 0.19 6.5E-06 51.1 2.7 23 217-239 36-58 (247)
491 3llm_A ATP-dependent RNA helic 88.6 2.6 8.8E-05 42.3 11.2 22 217-238 77-98 (235)
492 3cmu_A Protein RECA, recombina 88.6 0.28 9.5E-06 64.0 4.7 47 205-251 1415-1462(2050)
493 3cr8_A Sulfate adenylyltranfer 88.6 0.34 1.2E-05 55.3 5.0 28 215-242 368-395 (552)
494 1vpl_A ABC transporter, ATP-bi 88.6 0.2 6.7E-06 51.3 2.7 23 216-238 41-63 (256)
495 2j9r_A Thymidine kinase; TK1, 88.4 0.96 3.3E-05 44.2 7.3 111 215-336 27-139 (214)
496 1tq4_A IIGP1, interferon-induc 88.4 0.23 7.9E-06 54.4 3.3 24 215-238 68-91 (413)
497 2ghi_A Transport protein; mult 88.3 0.2 7E-06 51.3 2.7 24 216-239 46-69 (260)
498 2qi9_C Vitamin B12 import ATP- 88.3 0.21 7.2E-06 50.8 2.7 26 217-242 27-52 (249)
499 2f9l_A RAB11B, member RAS onco 88.2 0.24 8.2E-06 48.5 3.1 24 216-239 5-28 (199)
500 2dyk_A GTP-binding protein; GT 88.2 0.3 1E-05 45.6 3.6 23 217-239 2-24 (161)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.7e-46 Score=360.01 Aligned_cols=177 Identities=41% Similarity=0.724 Sum_probs=159.6
Q ss_pred CCCCCCCCCCCccccEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccc
Q 037332 6 SSSSSSRLNSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYA 84 (1007)
Q Consensus 6 ~~~~~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~ 84 (1007)
+|+++|++.+.++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|++|+
T Consensus 23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 444555677889999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhc-CCCeEEEEEEeeCCCccccccCchHHHHHHHHHHhccChHHHHHHHHHHHhhccCCCCCCC
Q 037332 85 SSKWCLDELVKILECKNM-NDQVVVPVFYHVDPSDVRKQTGSFGDAFSKLEQQFTEMPEKVQLWRAVLTEASNLSGWDST 163 (1007)
Q Consensus 85 ~s~~c~~el~~~~~~~~~-~~~~v~pvf~~v~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 163 (1007)
+|.||++||++|++|.+. +++.|+||||+|+|++||+|+|.|+++|.+|++++ ..+++++||.||+++|+++||+..
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecC
Confidence 999999999999999865 57899999999999999999999999999999876 358999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhhc
Q 037332 164 NIRSEAQLVDVIVKDILKKLE 184 (1007)
Q Consensus 164 ~~~~~~~~i~~i~~~i~~~~~ 184 (1007)
.+..|++++++||++|+++++
T Consensus 181 ~~~~e~~~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 181 KNDKQGAIADKVSADIWSHIS 201 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 988999999999999999987
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.5e-45 Score=346.55 Aligned_cols=170 Identities=44% Similarity=0.743 Sum_probs=145.1
Q ss_pred CCccccEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHHH
Q 037332 15 SQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDEL 93 (1007)
Q Consensus 15 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el 93 (1007)
..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEeeCCCccccccCchHHHHHHHHHHhccChHHHHHHHHHHHhhccCCCCCCCCCchHHHHHH
Q 037332 94 VKILECKNMNDQVVVPVFYHVDPSDVRKQTGSFGDAFSKLEQQFTEMPEKVQLWRAVLTEASNLSGWDSTNIRSEAQLVD 173 (1007)
Q Consensus 94 ~~~~~~~~~~~~~v~pvf~~v~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~i~ 173 (1007)
++|++|.+.+++.|+||||+|+|++||+|+|.|+++|.+|+++ ...+++++||.||+++|+++|++.. ..|+++|+
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~ 160 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVD 160 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHHH
Confidence 9999999888999999999999999999999999999999987 5679999999999999999999984 67999999
Q ss_pred HHHHHHHhhhcccccC
Q 037332 174 VIVKDILKKLESVTIS 189 (1007)
Q Consensus 174 ~i~~~i~~~~~~~~~~ 189 (1007)
+||++|.++++ .++|
T Consensus 161 ~Iv~~v~~~l~-~~~~ 175 (176)
T 3jrn_A 161 KIANEISNKKT-IYAT 175 (176)
T ss_dssp HHHHHHHTTCC-----
T ss_pred HHHHHHHHHhc-CCCC
Confidence 99999999998 5443
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-41 Score=397.54 Aligned_cols=299 Identities=16% Similarity=0.098 Sum_probs=239.5
Q ss_pred cchhhHHHHHHHHhccC-CCCeEEEEEEecCCCcHHHHHHHHHH----hhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 196 VGLNSRVEQIKSLLCIG-LPVFRIVGIWGMGGIGKTTIAGAIFN----QNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
|||+.++++|.++|..+ ....++|+|+||||+||||||+++|+ +++.+|+.++|+ ++++... ++ ...+++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~-~~-~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP-KS-TFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST-TH-HHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC-CC-HHHHHHHH
Confidence 59999999999999654 34689999999999999999999997 688899988888 4544322 23 77888888
Q ss_pred HHHHhcccc---cccC-----cchHHHHHHHhCCC-cEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc
Q 037332 271 LSEILDENI---KIRT-----PNLSECIKKRLRQM-DVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF 341 (1007)
Q Consensus 271 ~~~~~~~~~---~~~~-----~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~ 341 (1007)
+.++..... .... ..+...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 888876522 1111 12478899999996 999999999998876 3322 2799999999999999877
Q ss_pred C-cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH-HhhhCC
Q 037332 342 G-VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIALE-NLKLIC 419 (1007)
Q Consensus 342 ~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~-~l~~~~ 419 (1007)
+ ...+|+|++|+.++|++||.+++|+... .+.+.+++++|+++|+|+|||++++|+.++.+. .+|...+. .+....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 5 4468999999999999999999987643 467888999999999999999999999998774 23333332 223224
Q ss_pred CCchHHHHHhhhhccchhhHHHhh-----------hhhcccCCCCHHHHHHhhcCC--Cc------------hhHhHHHH
Q 037332 420 DPDIYDVLKVSYNELKAEEKSMFL-----------DIACFFKGEDKDYVTMSQDDP--NF------------AYYVLNVL 474 (1007)
Q Consensus 420 ~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~~~~~--~~------------~~~~l~~L 474 (1007)
...+..++.+||+.||+++|.||+ |||+||+++.++ +..|.++ || ...++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 567889999999999999999999 999999999988 6677776 54 22389999
Q ss_pred hhccCeEEccC---CeEehhHHHHHHHHHHHhhhch
Q 037332 475 VDKSLVTISCF---NKLQMHDLLQEMGQEIVRQESI 507 (1007)
Q Consensus 475 ~~~~li~~~~~---~~~~mH~lv~~~~~~~~~~e~~ 507 (1007)
+++||++.... .+|+|||++|++|+.++.+++.
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999987643 4799999999999998887764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-39 Score=396.20 Aligned_cols=434 Identities=18% Similarity=0.211 Sum_probs=297.4
Q ss_pred hccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCCcc-ccccccccc-c
Q 037332 555 FINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIK-QIWEGKKEA-F 632 (1007)
Q Consensus 555 f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~l-~ 632 (1007)
|.++++|++|++++|.+.... +..+..+ ++|++|++++|.+........+++|++|++++|.+. .+|..+... +
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDF---SRAISTC-TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD 294 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCH---HHHTTTC-SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred cccCCCCCEEECcCCcCCCcc---cHHHhcC-CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcC
Confidence 666666677766666542211 1112222 356666766666653333336666777777776666 556655443 6
Q ss_pred ccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcc-cccCCCccEEEecCCCCCcccCCCCC-CC-CCcEEe
Q 037332 633 KLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCN-IQNFINLGVLCFRGCKSLKCFPHDIH-FT-SPIKID 708 (1007)
Q Consensus 633 ~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~-~~-~L~~L~ 708 (1007)
+|++|++++|.+.+.+| .+..+++|++|++++|.....+|.. +..+++|++|++++|.....+|..+. +. +|+.|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 67777777776665555 3566677777777776655556654 66677777777776655445555443 33 677777
Q ss_pred ccccccCCccCCc-----cCcceEEEeeCCccc-cccccccccccccEEecCCccccccchhhhhccCccceEEecCCCC
Q 037332 709 ISYCVNLTEFPKI-----SGNIIVLDLRDSAIE-EVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSK 782 (1007)
Q Consensus 709 l~~~~~l~~~~~~-----~~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 782 (1007)
++++.....++.. ..+|+.|++++|.+. .+|..+..+++|++|++++|.....+|..++.+++|+.|++++|..
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 7666443333322 345777777777776 5677777777777777777777767777777777777777777777
Q ss_pred CcccccccccCCCCceeccCccccc-ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCc-ccChhh
Q 037332 783 LESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS-QVPASI 860 (1007)
Q Consensus 783 ~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~ 860 (1007)
.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+. .+|..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 7777777777777777777777777 56777777777777777777777777777777777777777777776 667777
Q ss_pred hcCCCCCEEEecCCCCC-cCC-----------------------------------------------------------
Q 037332 861 AHLNEVKSLSFAGCRNL-VLP----------------------------------------------------------- 880 (1007)
Q Consensus 861 ~~l~~L~~L~l~~~~~~-~~~----------------------------------------------------------- 880 (1007)
..+++|+.|++++|... .+|
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 77777777777777532 222
Q ss_pred -----------cccCCCCCCCEEeccCCCCC-CCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCC
Q 037332 881 -----------TLLSGLCSLTELDLKDCGIR-EIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 881 -----------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
..+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++.+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 23445678999999999988 58999999999999999999998 889999999999999999999999
Q ss_pred cCCCCcccccccccccccccCCCCCcchh--ccccccccccCCCcee
Q 037332 948 TLPELPLRLKLLEARNCKQLRSLPELPSC--LKGFDALELKIPPQIG 992 (1007)
Q Consensus 948 ~~p~~~~~L~~L~~~~c~~l~~~~~~p~~--l~~L~~L~~~~~~~~~ 992 (1007)
.+|..+..|+.|...+...+...+.+|.. +..+..+....++.+|
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99987766666666565555555555542 3444444445555554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-38 Score=392.27 Aligned_cols=438 Identities=17% Similarity=0.167 Sum_probs=308.7
Q ss_pred cccccccceecChhh---hccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC-Cccccceee
Q 037332 540 LNMSKIRNIHLDSRA---FINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF-DPENLIELN 615 (1007)
Q Consensus 540 l~l~~~~~~~~~~~~---f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~ 615 (1007)
+|++.+......+.. +.++++|+.|++++|.+... ... ....+|++|++++|.+...+..+ .+++|++|+
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 229 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD-----VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC-----CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEE
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc-----CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEE
Confidence 455555444444444 66777778887777764221 111 22346777888777776543334 677777788
Q ss_pred CCCCCcc-ccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccC-CCccEEEecCCCCCc
Q 037332 616 LPHSKIK-QIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNF-INLGVLCFRGCKSLK 693 (1007)
Q Consensus 616 L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l-~~L~~L~l~~~~~l~ 693 (1007)
+++|.+. .+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.....+|..+..+ ++|++|++++|....
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 8777776 45666777777777777777766555544 55555555555555444555544443 555555555554333
Q ss_pred ccCCCCC-CCCCcEEecccc-------------------------ccCCccCCcc----CcceEEEeeCCccc-cccccc
Q 037332 694 CFPHDIH-FTSPIKIDISYC-------------------------VNLTEFPKIS----GNIIVLDLRDSAIE-EVPSSI 742 (1007)
Q Consensus 694 ~~~~~~~-~~~L~~L~l~~~-------------------------~~l~~~~~~~----~~L~~L~l~~~~i~-~lp~~~ 742 (1007)
.+|..+. +++|+.|++++| .....+|... .+|+.|++++|.+. .+|..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 3343332 444555555444 3222233211 14555555555554 344444
Q ss_pred cc--cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc-ccchhhhcCCCC
Q 037332 743 ES--LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHLERL 819 (1007)
Q Consensus 743 ~~--l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L 819 (1007)
.. +++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 44 566777777777766677778888888888888888877788888888888888888888888 678888888999
Q ss_pred CEEeccCCCCCccCCcccCCCCCCCEEEeccccCc-ccChhhhcCCCCCEEEecCCCCC-cCCcccCCCCCCCEEeccCC
Q 037332 820 RNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCRNL-VLPTLLSGLCSLTELDLKDC 897 (1007)
Q Consensus 820 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~L~~n 897 (1007)
++|++++|...+.+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|... .+|..+..+++|+.|+|++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 99999998888888888889999999999999888 67888888999999999999865 67888888999999999998
Q ss_pred CCC-CCchh----------------------------------------------------------------------h
Q 037332 898 GIR-EIPQD----------------------------------------------------------------------I 906 (1007)
Q Consensus 898 ~l~-~lp~~----------------------------------------------------------------------l 906 (1007)
.++ .+|.. +
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 776 34443 2
Q ss_pred CCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCCCcccccccccccccccCCCCCcchhcccccccc
Q 037332 907 GSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARNCKQLRSLPELPSCLKGFDALE 984 (1007)
Q Consensus 907 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L~~L~ 984 (1007)
..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+.+.+|..+..|+.|+..+...++..+.+|..+.++..|+
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 33567899999999998 7899999999999999999999999998888888888888888877777887776655543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-37 Score=375.17 Aligned_cols=452 Identities=19% Similarity=0.188 Sum_probs=365.7
Q ss_pred cccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCC-CCC-Cccccceee
Q 037332 538 IFLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLP-FNF-DPENLIELN 615 (1007)
Q Consensus 538 i~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~ 615 (1007)
..+|++.+....+.+.+|.++++|++|++++|.+ ..+.........+|++|++++|.+..++ ..+ .+++|++|+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 3578888888888899999999999999999876 2333333333468999999999998875 444 899999999
Q ss_pred CCCCCcccc-ccccccccccceeeccCCcCCC-CCCCCCCCCCCcEEecccccccCCCCcccccCCCcc--EEEecCCCC
Q 037332 616 LPHSKIKQI-WEGKKEAFKLKSIDLRYSQYLT-RIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLG--VLCFRGCKS 691 (1007)
Q Consensus 616 L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~--~L~l~~~~~ 691 (1007)
+++|.++.+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++++|..
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999988 5778999999999999999877 446777799999999999987766678899999999 889999876
Q ss_pred CcccCCCCCCCCCcEEeccccc---------------------------------------------------cCCccC-
Q 037332 692 LKCFPHDIHFTSPIKIDISYCV---------------------------------------------------NLTEFP- 719 (1007)
Q Consensus 692 l~~~~~~~~~~~L~~L~l~~~~---------------------------------------------------~l~~~~- 719 (1007)
....|..+....|+.++++++. .+..++
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 6655555555555555554432 122222
Q ss_pred ---CccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccc-ccccCCC
Q 037332 720 ---KISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPE-ILEKMER 795 (1007)
Q Consensus 720 ---~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~ 795 (1007)
....+|++|++++|.+..+|..+..+++|++|++++|......|..+..+++|++|++++|...+.++. .+..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 234578999999999999999999999999999999887777787889999999999999887766654 4889999
Q ss_pred CceeccCccccccc---chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-C-hhhhcCCCCCEEE
Q 037332 796 LSYMDLSWTKIKEL---KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-P-ASIAHLNEVKSLS 870 (1007)
Q Consensus 796 L~~L~l~~n~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~-~~~~~l~~L~~L~ 870 (1007)
|+.|++++|.+..+ +..+..+++|++|++++|...+..|..+..+++|+.|++++|.+... + ..+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 99999999999866 56788999999999999988888888999999999999999998855 2 3478899999999
Q ss_pred ecCCCCCcC-CcccCCCCCCCEEeccCCCCCC--C--chhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEeeecCC
Q 037332 871 FAGCRNLVL-PTLLSGLCSLTELDLKDCGIRE--I--PQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 871 l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~--l--p~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~ 944 (1007)
+++|..... |..+.++++|++|+|++|.+.. + +..+..+++|++|++++|+++.+ |..+..+++|+.|+|++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 999996554 5678899999999999999875 2 35688899999999999999966 5778999999999999999
Q ss_pred CCCcCCCCcccccccccccccccCCCCCcch---hccccccccccCCCceeeE
Q 037332 945 MLQTLPELPLRLKLLEARNCKQLRSLPELPS---CLKGFDALELKIPPQIGIC 994 (1007)
Q Consensus 945 ~l~~~p~~~~~L~~L~~~~c~~l~~~~~~p~---~l~~L~~L~~~~~~~~~~~ 994 (1007)
+.+..|+.+..++.| ..++..+......|. .+.+|+.|....++..|.|
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 988888877777766 555555544443443 3556677777888877655
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-36 Score=363.89 Aligned_cols=441 Identities=18% Similarity=0.181 Sum_probs=320.2
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCC-CCCC-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTL-PFNF-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L 616 (1007)
.++++.+....+.+.+|.++++|++|++++|.+ ..++.......++|++|++++|.+..+ |..+ .+++|++|++
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 467777777788888999999999999999876 334333333346899999999999988 5556 8999999999
Q ss_pred CCCCccccc-cccccccccceeeccCCcCCC-CCC-CCCCCCCCcEEecccccccCCCCcccccCCCcc----EEEecCC
Q 037332 617 PHSKIKQIW-EGKKEAFKLKSIDLRYSQYLT-RIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLG----VLCFRGC 689 (1007)
Q Consensus 617 ~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~----~L~l~~~ 689 (1007)
++|.+..++ ..+..+++|++|++++|.+.. .+| .+.++++|++|++++|......+..++.+.+|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 999999887 678899999999999998875 445 478999999999999877666677777766655 7888887
Q ss_pred CCCcccCCCCCCCCCcEEeccccccC------------------------------------------------------
Q 037332 690 KSLKCFPHDIHFTSPIKIDISYCVNL------------------------------------------------------ 715 (1007)
Q Consensus 690 ~~l~~~~~~~~~~~L~~L~l~~~~~l------------------------------------------------------ 715 (1007)
......+..+...+|+.|+++++...
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 64433333444556777777665321
Q ss_pred ---C-cc--CCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccc
Q 037332 716 ---T-EF--PKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEI 789 (1007)
Q Consensus 716 ---~-~~--~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 789 (1007)
. .. .....+|+.|+++++.+..+| .+..+++|++|++++|.. ..+| .+ .+++|+.|++++|...... .
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--h
Confidence 0 00 112346788888888888888 788888888888888876 6777 44 7888888888887655544 4
Q ss_pred cccCCCCceeccCccccccc---chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC--hhhhcCC
Q 037332 790 LEKMERLSYMDLSWTKIKEL---KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP--ASIAHLN 864 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~l~ 864 (1007)
+..+++|+.|++++|.+..+ +..+..+++|++|++++|... .+|..+..+++|+.|++++|.+..++ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 56778888888888887755 667778888888888887644 35577778888888888888777654 3567778
Q ss_pred CCCEEEecCCCCCc-CCcccCCCCCCCEEeccCCCCCC--CchhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEee
Q 037332 865 EVKSLSFAGCRNLV-LPTLLSGLCSLTELDLKDCGIRE--IPQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYL 940 (1007)
Q Consensus 865 ~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L 940 (1007)
+|++|++++|.... .|..+.++++|+.|++++|.+.. +|..+..+++|++|++++|+++.+ |..+..+++|++|+|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 88888888887544 45567778888888888887775 577777888888888888887754 456777888888888
Q ss_pred ecCCCCCcCCCCcc---cccccccccccccCCCCCcchhcc----ccccccccCCCceeeE
Q 037332 941 INCYMLQTLPELPL---RLKLLEARNCKQLRSLPELPSCLK----GFDALELKIPPQIGIC 994 (1007)
Q Consensus 941 ~~n~~l~~~p~~~~---~L~~L~~~~c~~l~~~~~~p~~l~----~L~~L~~~~~~~~~~~ 994 (1007)
++|++.+..|..+. +|+.|++.+|. +. .+|..+. +|+.|....++..|.|
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~---~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNR-IE---TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSC-CC---CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCc-Cc---ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 88877776665443 45555555543 22 3444332 3555666666665544
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-34 Score=350.06 Aligned_cols=451 Identities=20% Similarity=0.204 Sum_probs=258.7
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCC-C-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFN-F-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L 616 (1007)
.++++.+....+.+.+|.++++|++|++++|.+.. +......-..+|++|++++|.+..+|.. + .+++|++|++
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46677776677778889999999999999886522 2222222235789999999999998874 4 8899999999
Q ss_pred CCCCccccc-cccccccccceeeccCCcCCCCCCC-CCCCCCCcEEecccccccCCCCcccc--cCCCccEEEecCCCCC
Q 037332 617 PHSKIKQIW-EGKKEAFKLKSIDLRYSQYLTRIPE-PSEIPNLEKINLWNCTNLAYIPCNIQ--NFINLGVLCFRGCKSL 692 (1007)
Q Consensus 617 ~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~l 692 (1007)
++|.+..++ ..+..+++|++|++++|.+....|. +.++++|++|++++|......+..+. .+++|++|++++|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999998886 5678899999999999988776664 67888999999988865544444443 4577888888777533
Q ss_pred cccCCCCC----------------------------CCCCcEEeccccccCCccCCcc-----CcceEEEeeCCcccccc
Q 037332 693 KCFPHDIH----------------------------FTSPIKIDISYCVNLTEFPKIS-----GNIIVLDLRDSAIEEVP 739 (1007)
Q Consensus 693 ~~~~~~~~----------------------------~~~L~~L~l~~~~~l~~~~~~~-----~~L~~L~l~~~~i~~lp 739 (1007)
...|..+. .++|+.|+++++......+... .+|+.|++++|.+..++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 32222111 1344444444432211111111 12555555555554433
Q ss_pred -ccccccccccEEecCCccccccchhhh---------------------------------hccCccceEEecCCCCCcc
Q 037332 740 -SSIESLTTLVKLDLSYCTRLKSLSTSI---------------------------------CKLRSLYWLYLNNCSKLES 785 (1007)
Q Consensus 740 -~~~~~l~~L~~L~l~~~~~~~~l~~~~---------------------------------~~l~~L~~L~l~~~~~~~~ 785 (1007)
..+..+++|++|++++|......|..+ ..+++|++|++++|...+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 234445555555555444333333223 3333344444444333333
Q ss_pred cccccccCCCCceeccCcc----------------------------ccccc-chhhhcCCCCCEEeccCCCCCccCC-c
Q 037332 786 FPEILEKMERLSYMDLSWT----------------------------KIKEL-KSSIDHLERLRNLKLRECSKLVSLP-E 835 (1007)
Q Consensus 786 ~~~~l~~l~~L~~L~l~~n----------------------------~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~ 835 (1007)
.+..+..+++|++|++++| .+..+ |..+..+++|+.|++++|...+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 3333333444444333332 22211 2233344444444444444433222 2
Q ss_pred ccCCCCCCCEEEecccc------------------------Cc---ccChhhhcCCCCCEEEecCCCCCcCCc-ccCCCC
Q 037332 836 NLGSLKSLVYIEAERSA------------------------IS---QVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLC 887 (1007)
Q Consensus 836 ~l~~l~~L~~L~l~~~~------------------------l~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 887 (1007)
.+..+++|+.|++++|. +. .+|..+..+++|+.|++++|.+..++. .+.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 33334444444444333 32 234455566666666666666555543 456666
Q ss_pred CCCEEeccCCCCCCCch---------hhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCCCCc---c
Q 037332 888 SLTELDLKDCGIREIPQ---------DIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLPELP---L 954 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p~~~---~ 954 (1007)
+|+.|+|++|.++.++. .+..+++|++|+|++|+++.+|. .+.++++|+.|+|++|.+.+..+..+ +
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 77777777776665421 25667777777777777777765 36777888888888876664444433 4
Q ss_pred cccccccccccccCCCCC--cchhccccccccccCCCceeeE
Q 037332 955 RLKLLEARNCKQLRSLPE--LPSCLKGFDALELKIPPQIGIC 994 (1007)
Q Consensus 955 ~L~~L~~~~c~~l~~~~~--~p~~l~~L~~L~~~~~~~~~~~ 994 (1007)
+|+.|++.++ .+..++. +...+.+|..|....+++.|.|
T Consensus 585 ~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 585 SLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCC
Confidence 4555555544 2222221 1114567778888888888877
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=346.23 Aligned_cols=416 Identities=19% Similarity=0.215 Sum_probs=328.9
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCC-CC-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPF-NF-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L 616 (1007)
.+|++.+....+.+.+|.++++|++|++++|.+ ..++........+|++|++++|.+..+|. .+ .+++|++|++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 467777777778888999999999999999876 33443333334689999999999998874 44 8999999999
Q ss_pred CCCCcccccc-ccccccccceeeccCCcCCC-CCC-CCCCCCCCcEEecccccccCCCCcccccCCCc----cEEEecCC
Q 037332 617 PHSKIKQIWE-GKKEAFKLKSIDLRYSQYLT-RIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINL----GVLCFRGC 689 (1007)
Q Consensus 617 ~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L----~~L~l~~~ 689 (1007)
++|.++.++. .+..+++|++|++++|.+.. .+| .+.++++|++|++++|......+..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999998875 68899999999999998876 345 57889999999999998766667788888888 88999888
Q ss_pred CCCcccCCCCCCCCCcEEecccccc-------------------------------------------------------
Q 037332 690 KSLKCFPHDIHFTSPIKIDISYCVN------------------------------------------------------- 714 (1007)
Q Consensus 690 ~~l~~~~~~~~~~~L~~L~l~~~~~------------------------------------------------------- 714 (1007)
......+..+...+|+.++++++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 7655555555555677776655310
Q ss_pred --C-Ccc---CCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccc
Q 037332 715 --L-TEF---PKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPE 788 (1007)
Q Consensus 715 --l-~~~---~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 788 (1007)
+ ... .....+|+.|++++|.+..+|..+..+ +|++|++++|... .+|. ..+++|+.|++++|......+.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc
Confidence 0 001 112357889999999999999888888 9999999988665 5554 4788899999998877665554
Q ss_pred ccccCCCCceeccCccccccc---chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh--hhhcC
Q 037332 789 ILEKMERLSYMDLSWTKIKEL---KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA--SIAHL 863 (1007)
Q Consensus 789 ~l~~l~~L~~L~l~~n~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~l 863 (1007)
..+++|+.|++++|.+... +..+..+++|++|++++|...+..+ .+..+++|+.|++++|.+...+. .+..+
T Consensus 344 --~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 344 --VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp --CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred --ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcC
Confidence 6789999999999998865 6788899999999999987665444 48889999999999998886643 67888
Q ss_pred CCCCEEEecCCCCCc-CCcccCCCCCCCEEeccCCCCC--CCchhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEe
Q 037332 864 NEVKSLSFAGCRNLV-LPTLLSGLCSLTELDLKDCGIR--EIPQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLY 939 (1007)
Q Consensus 864 ~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~ 939 (1007)
++|++|++++|.... .|..+.++++|+.|+|++|.+. .+|..+..+++|++|++++|+++.+ |..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 999999999998654 4567888999999999999887 4788889999999999999999866 77888999999999
Q ss_pred eecCCCCCcCCCCc---cccccccccccc
Q 037332 940 LINCYMLQTLPELP---LRLKLLEARNCK 965 (1007)
Q Consensus 940 L~~n~~l~~~p~~~---~~L~~L~~~~c~ 965 (1007)
|++|++.+..|..+ ++|+.|++.+++
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99998877766555 455555555544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-36 Score=360.18 Aligned_cols=342 Identities=13% Similarity=0.135 Sum_probs=166.5
Q ss_pred CCCCCCCC-CccccceeeCCCCCccc------------------cccccc--cccccceeeccCCcCCCCCC-CCCCCCC
Q 037332 599 LKTLPFNF-DPENLIELNLPHSKIKQ------------------IWEGKK--EAFKLKSIDLRYSQYLTRIP-EPSEIPN 656 (1007)
Q Consensus 599 l~~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~~~~l~~ 656 (1007)
+..+|..+ ++++|++|+|++|.++. +|..+. .+++|++|++++|.+.+.+| .+.++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 33345444 55556666666655555 555555 55566666666555555555 3455556
Q ss_pred CcEEeccccc-ccC-CCCcccccC------CCccEEEecCCCCCcccCC--CC-CCCCCcEEeccccccCCccCC--ccC
Q 037332 657 LEKINLWNCT-NLA-YIPCNIQNF------INLGVLCFRGCKSLKCFPH--DI-HFTSPIKIDISYCVNLTEFPK--ISG 723 (1007)
Q Consensus 657 L~~L~L~~~~-~~~-~l~~~~~~l------~~L~~L~l~~~~~l~~~~~--~~-~~~~L~~L~l~~~~~l~~~~~--~~~ 723 (1007)
|++|++++|. ... .+|..++.+ ++|++|++++|... .+|. .+ .+++|+.|+++++.....+|. ...
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 6666665554 332 355555544 55556655555433 4444 22 245555555554432223331 112
Q ss_pred cceEEEeeCCcccccccccccccc-ccEEecCCccccccchhhhhccC--ccceEEecCCCCCcccccccc-------cC
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLTT-LVKLDLSYCTRLKSLSTSICKLR--SLYWLYLNNCSKLESFPEILE-------KM 793 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~-------~l 793 (1007)
+|+.|++++|.+..+|..+..+++ |++|++++|... .+|..+..+. +|+.|++++|...+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 445555555555555555555555 555555554433 4444443322 455555555555444444444 44
Q ss_pred CCCceeccCcccccccchhh-hcCCCCCEEeccCCCCCccCCccc-C-------CCCCCCEEEeccccCcccChhhh--c
Q 037332 794 ERLSYMDLSWTKIKELKSSI-DHLERLRNLKLRECSKLVSLPENL-G-------SLKSLVYIEAERSAISQVPASIA--H 862 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~l-~-------~l~~L~~L~l~~~~l~~~~~~~~--~ 862 (1007)
++|+.|++++|.+..+|..+ ..+++|++|++++|... .+|... . ++++|+.|++++|.++.+|..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 45555555555555444432 23455555555554443 233221 1 11245555555555555554443 4
Q ss_pred CCCCCEEEecCCCCCcCCcccCCCCCCCEEeccC------CCCC-CCchhhCCCCCcCEEEccCCCCccchhhhcCCCCC
Q 037332 863 LNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKD------CGIR-EIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRL 935 (1007)
Q Consensus 863 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 935 (1007)
+++|+.|++++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|++|+|++|+++.+|..+. ++|
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 589 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNI 589 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTC
T ss_pred CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcC
Confidence 5555555555555444554444555555555532 2222 344455555555555555555555544432 455
Q ss_pred CEEeeecCCC
Q 037332 936 RYLYLINCYM 945 (1007)
Q Consensus 936 ~~L~L~~n~~ 945 (1007)
+.|+|++|++
T Consensus 590 ~~L~Ls~N~l 599 (636)
T 4eco_A 590 SVLDIKDNPN 599 (636)
T ss_dssp CEEECCSCTT
T ss_pred CEEECcCCCC
Confidence 5555555543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=359.71 Aligned_cols=444 Identities=18% Similarity=0.170 Sum_probs=323.9
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceec-CCCCccCCCCceEEEecCCCCCCC-CCCC-Cccccceee
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHL-DQGLDYLPEELRYFHWHGYPLKTL-PFNF-DPENLIELN 615 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l-~~~l~~~~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~ 615 (1007)
.+|++.+....+.+..|.++++|++|++++|... ..+ +..+.. ..+|++|++++|.+..+ |..+ .+++|++|+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRN-LPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSS-CTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcC-CCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4678888777888899999999999999998431 233 233333 35899999999999988 5555 899999999
Q ss_pred CCCCCccc-cccc--cccccccceeeccCCcCCCCCC--CCCCCCCCcEEecccccccCCCCcccccC--CCccEEEecC
Q 037332 616 LPHSKIKQ-IWEG--KKEAFKLKSIDLRYSQYLTRIP--EPSEIPNLEKINLWNCTNLAYIPCNIQNF--INLGVLCFRG 688 (1007)
Q Consensus 616 L~~~~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~l~~~~~~l--~~L~~L~l~~ 688 (1007)
|++|.+.. ++.. +..+++|++|+|++|.+.+..+ .++++++|++|++++|......+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 99999985 4544 7899999999999999877655 47899999999999998777778888877 8899999998
Q ss_pred CCCCcccCCCCC-------CCCCcEEeccccccCCccC----------------------------------------C-
Q 037332 689 CKSLKCFPHDIH-------FTSPIKIDISYCVNLTEFP----------------------------------------K- 720 (1007)
Q Consensus 689 ~~~l~~~~~~~~-------~~~L~~L~l~~~~~l~~~~----------------------------------------~- 720 (1007)
|......+..+. ...|+.|+++++......+ .
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 876655544322 2248888888763211110 0
Q ss_pred ccCcceEEEeeCCcccccc-ccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCcee
Q 037332 721 ISGNIIVLDLRDSAIEEVP-SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYM 799 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 799 (1007)
...+|+.|++++|.+..++ ..+..+++|+.|++++|......|..+..+++|++|++++|...+..+..+..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 0247899999999988764 558889999999999988877778888999999999999988877778888999999999
Q ss_pred ccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh--------------------
Q 037332 800 DLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-------------------- 858 (1007)
Q Consensus 800 ~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-------------------- 858 (1007)
++++|.+..++. .+..+++|+.|++++|...+ + ..+++|+.|++++|.++.+|.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 999999987764 57889999999999887543 1 224455555555554443332
Q ss_pred --hhhcCCCCCEEEecCCCCCcCCc--ccCCCCCCCEEeccCCCCCCC------chhhCCCCCcCEEEccCCCCccchh-
Q 037332 859 --SIAHLNEVKSLSFAGCRNLVLPT--LLSGLCSLTELDLKDCGIREI------PQDIGSVFALEKIDLSGNNFETLPA- 927 (1007)
Q Consensus 859 --~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~l------p~~l~~l~~L~~L~L~~n~l~~lp~- 927 (1007)
.+..+++|+.|++++|.....+. .+..+++|+.|+|++|.++.+ +..+..+++|++|+|++|+++.+|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 23467788888888887654433 345567788888888777532 3446677788888888887776654
Q ss_pred hhcCCCCCCEEeeecCCCCCcCCCC-cccccccccccccccCCCCCcchhccccccccccCCCceeeE
Q 037332 928 SMKQLSRLRYLYLINCYMLQTLPEL-PLRLKLLEARNCKQLRSLPELPSCLKGFDALELKIPPQIGIC 994 (1007)
Q Consensus 928 ~~~~l~~L~~L~L~~n~~l~~~p~~-~~~L~~L~~~~c~~l~~~~~~p~~l~~L~~L~~~~~~~~~~~ 994 (1007)
.+..+++|+.|+|++|.+.+..|.. +++|+.|++.++ ...+..|..+.+|..|....+++.|.|
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N---~l~~~~~~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN---QLLAPNPDVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEE---CCCCCCSCCCSSCCEEEEEEECCCCSS
T ss_pred HccchhhhheeECCCCCCCccChhhhhccccEEECCCC---cCCCCChhHhCCcCEEEecCCCccccc
Confidence 4677888888888888766544433 355665555544 333444555666777776666666655
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.7e-35 Score=383.79 Aligned_cols=307 Identities=20% Similarity=0.253 Sum_probs=245.9
Q ss_pred cccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh---hhcccCceEEEEecchhhhccCc
Q 037332 186 VTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ---NFREFEGKCFVANVREESEKEGV 262 (1007)
Q Consensus 186 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~ 262 (1007)
..+|..+..||||++++++|.++|...++..++|+|+||||+||||||+++|++ ...+|...+||..+++... ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~- 194 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-SG- 194 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-HH-
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-hH-
Confidence 346677788999999999999999776677899999999999999999999986 3566888887766654322 11
Q ss_pred HHHHHHHHHHHHhcccccc-----cCcchHHHHHHHhCCC--cEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 263 LVRLRERILSEILDENIKI-----RTPNLSECIKKRLRQM--DVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
....+..+...+....... ..+++.+.++..+.++ |+||||||||+.++|+.+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 3344555655555432211 1234566777777766 999999999998877654 6899999999999
Q ss_pred hhHhh-cCcccEEEcCC-CChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH
Q 037332 336 RVLDN-FGVSNIYKVNG-LENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIALE 413 (1007)
Q Consensus 336 ~v~~~-~~~~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~ 413 (1007)
.++.. .+....++++. |+++||++||..+++.. .+.+.+.+++|+++|+|+||||+++|++|+.++ ..|...++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 99854 45567899996 99999999999988543 233456789999999999999999999998775 57988888
Q ss_pred HhhhCCC-----------CchHHHHHhhhhccchhhHHHhhhhhcccCCCCH--HHHHHhhcCCCc-hhHhHHHHhhccC
Q 037332 414 NLKLICD-----------PDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDK--DYVTMSQDDPNF-AYYVLNVLVDKSL 479 (1007)
Q Consensus 414 ~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~~~~~~~-~~~~l~~L~~~~l 479 (1007)
.+..... ..+..++.+||+.|++++|.||+|||+||+++.+ +.+...|.+++. ++.++++|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 8765431 2488999999999999999999999999998765 568888987766 8889999999999
Q ss_pred eEEccCCe---EehhHHHHHHHHHHHhhh
Q 037332 480 VTISCFNK---LQMHDLLQEMGQEIVRQE 505 (1007)
Q Consensus 480 i~~~~~~~---~~mH~lv~~~~~~~~~~e 505 (1007)
++...++. |+||+++|+++++.+.++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99886664 999999999999987655
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.4e-34 Score=341.70 Aligned_cols=419 Identities=16% Similarity=0.119 Sum_probs=325.8
Q ss_pred ccccEEEEecccCCCcceecC-CCCccCCCCceEEEecCCCCCCCC-CCC-CccccceeeCCCCCcccc-cccccccccc
Q 037332 559 SNLRLLKFYTCEYMSSKVHLD-QGLDYLPEELRYFHWHGYPLKTLP-FNF-DPENLIELNLPHSKIKQI-WEGKKEAFKL 634 (1007)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~l~-~~l~~~~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L 634 (1007)
.+++.|++++|.+. .++ ..+.. .++|++|++++|.+..++ ..+ .+++|++|++++|.+..+ |..+..+++|
T Consensus 33 ~~l~~L~Ls~n~i~----~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLP----TIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCS----EECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCccC----cCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 36899999998763 332 23333 358999999999998874 445 899999999999999877 6678899999
Q ss_pred ceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCC-CCCCCc--EEecc
Q 037332 635 KSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDI-HFTSPI--KIDIS 710 (1007)
Q Consensus 635 ~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~--~L~l~ 710 (1007)
++|++++|.+....+ .+..+++|++|++++|.........+..+++|++|++++|......+..+ .+.+|+ .++++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 999999999877543 57899999999999987665333344459999999999986544333333 367777 78888
Q ss_pred ccccCCccCCcc------------------------------------------------------CcceEEEeeCCccc
Q 037332 711 YCVNLTEFPKIS------------------------------------------------------GNIIVLDLRDSAIE 736 (1007)
Q Consensus 711 ~~~~l~~~~~~~------------------------------------------------------~~L~~L~l~~~~i~ 736 (1007)
++......+... .+++.|++++|.+.
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 764332222111 15778888888888
Q ss_pred ccccc-ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc-ccch-hh
Q 037332 737 EVPSS-IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKS-SI 813 (1007)
Q Consensus 737 ~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~-~~ 813 (1007)
.++.. +..+++|++|++++|.. ..+|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+. .++. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 87765 88899999999999754 478888889999999999998888777888899999999999999887 5554 48
Q ss_pred hcCCCCCEEeccCCCCCccC--CcccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCCCcC--CcccCCCCC
Q 037332 814 DHLERLRNLKLRECSKLVSL--PENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVL--PTLLSGLCS 888 (1007)
Q Consensus 814 ~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~ 888 (1007)
..+++|++|++++|...+.. +..+..+++|+.|++++|.+..+ |..+..+++|++|++++|..... +..+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 88999999999998876654 77889999999999999998865 56788899999999999986543 335788999
Q ss_pred CCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCcc--ch--hhhcCCCCCCEEeeecCCCCCcCCCCccccccccccc
Q 037332 889 LTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFET--LP--ASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARN 963 (1007)
Q Consensus 889 L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~--lp--~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~ 963 (1007)
|+.|++++|.+... |..+..+++|++|++++|.++. +| ..+..+++|++|++++|.+.+..|..+..++.|...+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 99999999999865 6678899999999999999874 22 4688999999999999998887777666555555555
Q ss_pred ccccCCCCCcchhccccccc
Q 037332 964 CKQLRSLPELPSCLKGFDAL 983 (1007)
Q Consensus 964 c~~l~~~~~~p~~l~~L~~L 983 (1007)
+.+++.....|..+.++..|
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCccCcCChhHhCccccc
Confidence 55555555566666666655
No 14
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.7e-35 Score=344.05 Aligned_cols=278 Identities=19% Similarity=0.172 Sum_probs=214.2
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHH--hhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFN--QNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
+..|||+.++++|.++|... +..++|+|+||||+||||||+++|+ +++.+|+..+||.++++.. + ...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~---d-~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---S-PETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS---S-HHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC---C-HHHHHHHH
Confidence 44699999999999999753 3478999999999999999999997 4788999866665565433 2 44444444
Q ss_pred HHHHhccc------cc------ccCcchHHHHHHHh---CCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 271 LSEILDEN------IK------IRTPNLSECIKKRL---RQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 271 ~~~~~~~~------~~------~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
...+.... .. ...+.+...+++.| .+||+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 44322110 00 00122345666655 6899999999999999998763 799999999999
Q ss_pred hhHhhcCcccEEEcC------CCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC--CHHH
Q 037332 336 RVLDNFGVSNIYKVN------GLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQK--NKLD 407 (1007)
Q Consensus 336 ~v~~~~~~~~~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~--~~~~ 407 (1007)
.++..+.....|+|+ +|+.+||++||.++. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 988654333456676 999999999999884 322 12233333 999999999999999877 6778
Q ss_pred HHHHHHHhhhCCCCchHHHHHhhhhccchhh-HHHhhhhhcccCCCCH--HHHHHhhcCCCc--hhHhHHHHhhccCeEE
Q 037332 408 WEIALENLKLICDPDIYDVLKVSYNELKAEE-KSMFLDIACFFKGEDK--DYVTMSQDDPNF--AYYVLNVLVDKSLVTI 482 (1007)
Q Consensus 408 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~~~~~~~~~~~--~~~~l~~L~~~~li~~ 482 (1007)
|... ....+..++++||+.|++++ |.||++||+||+++.+ +.+..+|.++|. +..++++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 34679999999999999999 9999999999998776 458889998864 7889999999999998
Q ss_pred cc-CCeEehhHHHHHHH
Q 037332 483 SC-FNKLQMHDLLQEMG 498 (1007)
Q Consensus 483 ~~-~~~~~mH~lv~~~~ 498 (1007)
.. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 63 56899999998854
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-34 Score=348.39 Aligned_cols=343 Identities=15% Similarity=0.215 Sum_probs=219.0
Q ss_pred CCCccccccccccccccceeeccCCcCCCC-----------------CC-CCC--CCCCCcEEecccccccCCCCccccc
Q 037332 618 HSKIKQIWEGKKEAFKLKSIDLRYSQYLTR-----------------IP-EPS--EIPNLEKINLWNCTNLAYIPCNIQN 677 (1007)
Q Consensus 618 ~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~-----------------~~-~~~--~l~~L~~L~L~~~~~~~~l~~~~~~ 677 (1007)
+|+++.+|..+..+++|++|+|++|.+.+. +| .+. ++++|++|++++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 567777888888899999999999987773 44 567 8889999999988888888888889
Q ss_pred CCCccEEEecCCCCCc--ccCCCCC-------CCCCcEEeccccccCCccCC-----ccCcceEEEeeCCccc-cccccc
Q 037332 678 FINLGVLCFRGCKSLK--CFPHDIH-------FTSPIKIDISYCVNLTEFPK-----ISGNIIVLDLRDSAIE-EVPSSI 742 (1007)
Q Consensus 678 l~~L~~L~l~~~~~l~--~~~~~~~-------~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~~~i~-~lp~~~ 742 (1007)
+++|++|++++|..+. .+|..+. +++|+.|+++++..- .+|. ...+|+.|++++|.+. .+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 9999999998887333 4555443 266666666665332 4544 2335666666666666 666 56
Q ss_pred cccccccEEecCCccccccchhhhhccCc-cceEEecCCCCCcccccccccCC--CCceeccCcccccc-cchhhh----
Q 037332 743 ESLTTLVKLDLSYCTRLKSLSTSICKLRS-LYWLYLNNCSKLESFPEILEKME--RLSYMDLSWTKIKE-LKSSID---- 814 (1007)
Q Consensus 743 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~n~l~~-l~~~~~---- 814 (1007)
..+++|++|++++|... .+|..+..+++ |++|++++|... .+|..+..++ +|+.|++++|.+.. +|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 66666666666665544 55666666666 666666665544 5555554433 66666666666653 344444
Q ss_pred ---cCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcC--------CCCCEEEecCCCCCcCCccc
Q 037332 815 ---HLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHL--------NEVKSLSFAGCRNLVLPTLL 883 (1007)
Q Consensus 815 ---~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l--------~~L~~L~l~~~~~~~~~~~~ 883 (1007)
.+++|++|++++|......+..+..+++|+.|++++|.++.+|...... ++|+.|++++|.+..+|..+
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 5556666666666555322223445666666666666666655433221 26666666666666666655
Q ss_pred C--CCCCCCEEeccCCCCCCCchhhCCCCCcCEEEcc------CCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCC-Cc
Q 037332 884 S--GLCSLTELDLKDCGIREIPQDIGSVFALEKIDLS------GNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPE-LP 953 (1007)
Q Consensus 884 ~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~------~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~-~~ 953 (1007)
. .+++|+.|+|++|+++.+|..+..+++|++|+|+ +|++. .+|..+..+++|++|+|++|++ +.+|. ..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 4 6666666666666666666666666666666663 33333 5566666666666666666665 55553 34
Q ss_pred cccccccccccc
Q 037332 954 LRLKLLEARNCK 965 (1007)
Q Consensus 954 ~~L~~L~~~~c~ 965 (1007)
++|+.|++.+|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 556666665554
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-34 Score=342.67 Aligned_cols=415 Identities=18% Similarity=0.146 Sum_probs=325.2
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceec-CCCCccCCCCceEEEecCCCCCCCCC-CC-Cccccceee
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHL-DQGLDYLPEELRYFHWHGYPLKTLPF-NF-DPENLIELN 615 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l-~~~l~~~~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~ 615 (1007)
.++++.+....+.+.+|.++++|++|++++|.+. .+ +..+.. ..+|++|++++|.+..++. .+ .+++|++|+
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ----SFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----CCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCccc----ccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 4677777777788889999999999999998762 33 333433 3589999999999999883 34 899999999
Q ss_pred CCCCCcc--ccccccccccccceeeccCCcCCCCCCC-CCCCCCCc----EEecccccccCCCCcccccCCCccEEEecC
Q 037332 616 LPHSKIK--QIWEGKKEAFKLKSIDLRYSQYLTRIPE-PSEIPNLE----KINLWNCTNLAYIPCNIQNFINLGVLCFRG 688 (1007)
Q Consensus 616 L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~----~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~ 688 (1007)
+++|.+. .+|..+..+++|++|++++|.+....|. +..+.+|+ +|++++|... .++.......+|+.|++++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEES
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeeeeeccC
Confidence 9999998 4788999999999999999988776553 44555444 7888887644 3343333344778887777
Q ss_pred CCCC----------------------------------------------------------cccCCCCCCCCCcEEecc
Q 037332 689 CKSL----------------------------------------------------------KCFPHDIHFTSPIKIDIS 710 (1007)
Q Consensus 689 ~~~l----------------------------------------------------------~~~~~~~~~~~L~~L~l~ 710 (1007)
|... ...|....+++|+.++++
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 6431 111221225778888888
Q ss_pred ccccCCccCC--ccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcc--c
Q 037332 711 YCVNLTEFPK--ISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLES--F 786 (1007)
Q Consensus 711 ~~~~l~~~~~--~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--~ 786 (1007)
++.. ..++. ...+|+.|++++|.+..+|. + .+++|++|++++|...... .+..+++|++|++++|...+. .
T Consensus 294 ~~~~-~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 294 GVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp SCCC-CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred Cccc-hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 7643 44442 23478999999999999994 5 8999999999998666554 567899999999999876554 3
Q ss_pred ccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCcc-cChhhhcCC
Q 037332 787 PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQ-VPASIAHLN 864 (1007)
Q Consensus 787 ~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~ 864 (1007)
+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.+.. .|..+..++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 777888999999999999999888888999999999999998877766 678899999999999999885 566788899
Q ss_pred CCCEEEecCCCCCc--CCcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEee
Q 037332 865 EVKSLSFAGCRNLV--LPTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYL 940 (1007)
Q Consensus 865 ~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L 940 (1007)
+|++|++++|.... .|..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+++.+ |..+..+++|+.|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 99999999998654 677888999999999999999875 56788999999999999999865 778899999999999
Q ss_pred ecCCCCCcCCCCc----cccccccccccc
Q 037332 941 INCYMLQTLPELP----LRLKLLEARNCK 965 (1007)
Q Consensus 941 ~~n~~l~~~p~~~----~~L~~L~~~~c~ 965 (1007)
++|++. .+|..+ .+|+.|++.+++
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 999865 566433 346667666654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-34 Score=350.43 Aligned_cols=398 Identities=15% Similarity=0.169 Sum_probs=268.3
Q ss_pred ccccEEEEecccCCCcceecCCCCccCCCCceEEEe-cCCCCCCC-C---------------------------------
Q 037332 559 SNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHW-HGYPLKTL-P--------------------------------- 603 (1007)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l-~~~~l~~l-p--------------------------------- 603 (1007)
.++..|+|.+|.+. ..++..+..+ ++|++|++ ++|.+... |
T Consensus 323 ~~V~~L~Ls~~~L~---G~ip~~l~~L-~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFGAK---GRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTCCE---EEECGGGGGC-TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCCCC---CcCchHHhcc-ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 56888999888652 2455556555 48999999 66632111 0
Q ss_pred -----------------CC--CCccccceeeCCC--CCccccccccccccccceeeccCCcCCC----------------
Q 037332 604 -----------------FN--FDPENLIELNLPH--SKIKQIWEGKKEAFKLKSIDLRYSQYLT---------------- 646 (1007)
Q Consensus 604 -----------------~~--~~l~~L~~L~L~~--~~i~~l~~~~~~l~~L~~L~L~~~~~~~---------------- 646 (1007)
.. .....++.+.+.. |+++.+|..+..+++|++|+|++|.+.+
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 00 0122333344433 7777899999999999999999999887
Q ss_pred -CCC-CCC--CCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCc--ccCCCC--------CCCCCcEEecccc
Q 037332 647 -RIP-EPS--EIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLK--CFPHDI--------HFTSPIKIDISYC 712 (1007)
Q Consensus 647 -~~~-~~~--~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~--~~~~~~--------~~~~L~~L~l~~~ 712 (1007)
.+| .++ ++++|++|+|++|.....+|..++++++|++|++++|..+. .+|..+ .+++|+.|+++++
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 155 566 89999999999999889999999999999999999987343 355322 2457777777775
Q ss_pred ccCCccCC-----ccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCc-cceEEecCCCCCccc
Q 037332 713 VNLTEFPK-----ISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRS-LYWLYLNNCSKLESF 786 (1007)
Q Consensus 713 ~~l~~~~~-----~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~ 786 (1007)
..- .+|. ...+|+.|++++|.+..+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|... .+
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 433 5554 3346677777777777777 6777777777777776655 66666777777 777777776644 56
Q ss_pred ccccccCCC--CceeccCcccccccch----hhh--cCCCCCEEeccCCCCCccCCccc-CCCCCCCEEEeccccCcccC
Q 037332 787 PEILEKMER--LSYMDLSWTKIKELKS----SID--HLERLRNLKLRECSKLVSLPENL-GSLKSLVYIEAERSAISQVP 857 (1007)
Q Consensus 787 ~~~l~~l~~--L~~L~l~~n~l~~l~~----~~~--~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~ 857 (1007)
|..+..++. |+.|++++|.+...+. .+. .+++|+.|++++|... .+|..+ ..+++|+.|++++|.+..+|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 666655543 7777777777653221 222 3346777777776655 444433 46677777777777777666
Q ss_pred hhhhcC--------CCCCEEEecCCCCCcCCcccC--CCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccC------CC
Q 037332 858 ASIAHL--------NEVKSLSFAGCRNLVLPTLLS--GLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSG------NN 921 (1007)
Q Consensus 858 ~~~~~l--------~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------n~ 921 (1007)
..+... ++|+.|+|++|.+..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccc
Confidence 554332 267777777777667776665 67777777777777777777777777777777765 44
Q ss_pred Cc-cchhhhcCCCCCCEEeeecCCCCCcCCC-Ccccccccccccccc
Q 037332 922 FE-TLPASMKQLSRLRYLYLINCYMLQTLPE-LPLRLKLLEARNCKQ 966 (1007)
Q Consensus 922 l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~-~~~~L~~L~~~~c~~ 966 (1007)
+. .+|..+..+++|+.|+|++|++ +.+|. .+++|+.|++.+|+-
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 43 5666777777777777777766 66664 445677777766653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-34 Score=352.55 Aligned_cols=348 Identities=14% Similarity=0.126 Sum_probs=294.8
Q ss_pred CCCCCCCCCC-CccccceeeCCCCCccc------------------cccccc--cccccceeeccCCcCCCCCC-CCCCC
Q 037332 597 YPLKTLPFNF-DPENLIELNLPHSKIKQ------------------IWEGKK--EAFKLKSIDLRYSQYLTRIP-EPSEI 654 (1007)
Q Consensus 597 ~~l~~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~~~~l 654 (1007)
|.+..+|..+ ++++|++|+|++|.++. +|..+. .+++|++|+|++|.+.+.+| .+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555588777 89999999999999998 899887 99999999999999888888 47899
Q ss_pred CCCcEEeccccc-ccC-CCCcccccCC-------CccEEEecCCCCCcccCC--CC-CCCCCcEEeccccccCCccCC--
Q 037332 655 PNLEKINLWNCT-NLA-YIPCNIQNFI-------NLGVLCFRGCKSLKCFPH--DI-HFTSPIKIDISYCVNLTEFPK-- 720 (1007)
Q Consensus 655 ~~L~~L~L~~~~-~~~-~l~~~~~~l~-------~L~~L~l~~~~~l~~~~~--~~-~~~~L~~L~l~~~~~l~~~~~-- 720 (1007)
++|++|++++|. ... .+|..++.++ +|++|++++|... .+|. .+ .+++|+.|+++++.. ..+|.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLEAFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCCCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccchhhc
Confidence 999999999997 444 5887777666 9999999998755 7887 44 489999999998753 36663
Q ss_pred ccCcceEEEeeCCcccccccccccccc-ccEEecCCccccccchhhhhccCc--cceEEecCCCCCcccccc---cc--c
Q 037332 721 ISGNIIVLDLRDSAIEEVPSSIESLTT-LVKLDLSYCTRLKSLSTSICKLRS--LYWLYLNNCSKLESFPEI---LE--K 792 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~l~~~~~~~~~~~~---l~--~ 792 (1007)
...+|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|...+.+|.. +. .
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 235789999999999999999999999 999999998765 78877776654 999999999887765532 22 3
Q ss_pred CCCCceeccCcccccccchhhh-cCCCCCEEeccCCCCCccCCcccC--------CCCCCCEEEeccccCcccChhhh--
Q 037332 793 MERLSYMDLSWTKIKELKSSID-HLERLRNLKLRECSKLVSLPENLG--------SLKSLVYIEAERSAISQVPASIA-- 861 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~--------~l~~L~~L~l~~~~l~~~~~~~~-- 861 (1007)
+++|+.|++++|.+..+|..+. .+++|+.|++++|... .+|..+. ++++|+.|++++|.++.+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 4589999999999999998764 8999999999999776 5665433 33499999999999999999887
Q ss_pred cCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccC------CCCC-CCchhhCCCCCcCEEEccCCCCccchhhhcCCCC
Q 037332 862 HLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKD------CGIR-EIPQDIGSVFALEKIDLSGNNFETLPASMKQLSR 934 (1007)
Q Consensus 862 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 934 (1007)
.+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|++..+|..+. ++
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~ 828 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQ 828 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SS
T ss_pred cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CC
Confidence 99999999999999888999899999999999987 5554 579999999999999999999999998765 79
Q ss_pred CCEEeeecCCCCCcCC
Q 037332 935 LRYLYLINCYMLQTLP 950 (1007)
Q Consensus 935 L~~L~L~~n~~l~~~p 950 (1007)
|+.|+|++|++...-+
T Consensus 829 L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 829 LYILDIADNPNISIDV 844 (876)
T ss_dssp SCEEECCSCTTCEEEC
T ss_pred CCEEECCCCCCCccCh
Confidence 9999999999876544
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.1e-34 Score=337.63 Aligned_cols=409 Identities=15% Similarity=0.156 Sum_probs=222.6
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCC-C-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFN-F-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L 616 (1007)
.+|++.+....+.+.+|.++++|++|++++|.+. .++........+|++|++++|.+..+|.. + .+++|++|++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 3566666655666677777778888887777652 23322222234777778877777777754 3 6777778888
Q ss_pred CCCCcccc--ccccccccccceeeccCCcCCCCCC--CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCC
Q 037332 617 PHSKIKQI--WEGKKEAFKLKSIDLRYSQYLTRIP--EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSL 692 (1007)
Q Consensus 617 ~~~~i~~l--~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 692 (1007)
++|.++.+ |..+..+++|++|++++|...+.+| .+..+++|++|++++|......|..++.+++|++|++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~- 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES- 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-
Confidence 77777743 5567777777788777777555554 467777777777777776666777777777777777776643
Q ss_pred cccCCCC--CCCCCcEEeccccccCC------ccCCccCcceEEEeeCCccc-----cccccccccccccEEecCCcccc
Q 037332 693 KCFPHDI--HFTSPIKIDISYCVNLT------EFPKISGNIIVLDLRDSAIE-----EVPSSIESLTTLVKLDLSYCTRL 759 (1007)
Q Consensus 693 ~~~~~~~--~~~~L~~L~l~~~~~l~------~~~~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~ 759 (1007)
..++... .+++|+.|+++++.... .+.....+|+.|++++|.+. .++..+..+++|+.|++++|...
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 2222221 25677777777654322 11223456677777776654 23333455566666666665432
Q ss_pred cc--c----hhhhhccCccceEEecCCCCCcc-----cccccccCCCCceeccCcccccccchhh-hcCCCCCEEeccCC
Q 037332 760 KS--L----STSICKLRSLYWLYLNNCSKLES-----FPEILEKMERLSYMDLSWTKIKELKSSI-DHLERLRNLKLREC 827 (1007)
Q Consensus 760 ~~--l----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~L~l~~~ 827 (1007)
.. + ...+..+++|+.|.+.++..... ++..+..+++|+.|++++|.+..+|..+ ..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 21 0 01122333444444443322110 1111222344555555555555555443 34555555555555
Q ss_pred CCCccCC---cccCCCCCCCEEEeccccCcccC---hhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCC
Q 037332 828 SKLVSLP---ENLGSLKSLVYIEAERSAISQVP---ASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 828 ~~~~~~~---~~l~~l~~L~~L~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 901 (1007)
...+..| ..++.+++|+.|++++|.++.++ ..+..+++|++|++++|....+|..+..+++|++|++++|.++.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 5444332 12444455555555555554443 22444555555555555544455444455555555555555544
Q ss_pred Cchhh------------------CCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCc
Q 037332 902 IPQDI------------------GSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELP 953 (1007)
Q Consensus 902 lp~~l------------------~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~ 953 (1007)
+|..+ ..+++|++|+|++|+++.+|. ...+++|++|+|++|++.+..|..+
T Consensus 425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 44322 244555555555555555553 2345555555555555544444333
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-32 Score=335.97 Aligned_cols=309 Identities=22% Similarity=0.231 Sum_probs=220.9
Q ss_pred CcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCC-CCCCcEEeccccccCC-----ccC-------CccC
Q 037332 657 LEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIH-FTSPIKIDISYCVNLT-----EFP-------KISG 723 (1007)
Q Consensus 657 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~-----~~~-------~~~~ 723 (1007)
|++|++++|......|..++.+++|++|++++|......|..+. +++|+.|+++++..-. .+| ....
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 66666666655545555666677777777776655444444443 6666777666532111 111 2345
Q ss_pred cceEEEeeCCccccccc-cccccccccEEecCCcc----------------------------ccccchhhhhccCccce
Q 037332 724 NIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCT----------------------------RLKSLSTSICKLRSLYW 774 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~----------------------------~~~~l~~~~~~l~~L~~ 774 (1007)
+|+.|++++|.+..++. .+..+++|++|++++|. .....|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 67788888877776543 36666666666666543 33333455666677777
Q ss_pred EEecCCCCCcccc-cccccCCCCceeccCccccccc-chhhhcCCCCCEEeccCCCCC--ccCCcccCCCCCCCEEEecc
Q 037332 775 LYLNNCSKLESFP-EILEKMERLSYMDLSWTKIKEL-KSSIDHLERLRNLKLRECSKL--VSLPENLGSLKSLVYIEAER 850 (1007)
Q Consensus 775 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~ 850 (1007)
|++++|...+.+| ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|... +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 7777766655444 4566677777777777776644 345667777777777777653 56788899999999999999
Q ss_pred ccCcccCh-hhhcCCCCCEEEecCCCCCcCCc---------ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccC
Q 037332 851 SAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT---------LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSG 919 (1007)
Q Consensus 851 ~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---------~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~ 919 (1007)
|.++.++. .+..+++|++|++++|....++. .+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99998865 47899999999999999765422 37889999999999999999986 479999999999999
Q ss_pred CCCccchhh-hcCCCCCCEEeeecCCCCCcCCC----Cccccccccccccc
Q 037332 920 NNFETLPAS-MKQLSRLRYLYLINCYMLQTLPE----LPLRLKLLEARNCK 965 (1007)
Q Consensus 920 n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p~----~~~~L~~L~~~~c~ 965 (1007)
|+++.+|.. +..+++|+.|+|++|++.+..|. .+++|+.|++.+++
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 999988865 58899999999999987765554 35677777777655
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-33 Score=343.94 Aligned_cols=391 Identities=14% Similarity=0.150 Sum_probs=286.3
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceec-CCCCccCCCCceEEEecCC-CCCCC-CCCC-Ccccccee
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHL-DQGLDYLPEELRYFHWHGY-PLKTL-PFNF-DPENLIEL 614 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l-~~~l~~~~~~L~~L~l~~~-~l~~l-p~~~-~l~~L~~L 614 (1007)
..|++......++. -.++|+.|++++|.+. .+ +..+.. ..+|++|++++| ....+ |..+ ++++|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~----~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR----TVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCC----EECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCC----ccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 34444444444443 4578999999999763 23 233333 368999999999 45566 4555 89999999
Q ss_pred eCCCCCcccc-ccccccccccceeeccCCcCCCCCCC---CCCCCCCcEEecccccccCCCC-cccccCCCccEEEecCC
Q 037332 615 NLPHSKIKQI-WEGKKEAFKLKSIDLRYSQYLTRIPE---PSEIPNLEKINLWNCTNLAYIP-CNIQNFINLGVLCFRGC 689 (1007)
Q Consensus 615 ~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 689 (1007)
+|++|.+..+ |..+..+++|++|+|++|.+....|. +.++++|++|++++|......+ ..++++++|++|++++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 9999999987 78899999999999999998876553 7899999999999998766544 57999999999999998
Q ss_pred CCCcccCCCCC-C--CCCcEEeccccccCCccCCcc---------CcceEEEeeCCccc-ccccccc-------------
Q 037332 690 KSLKCFPHDIH-F--TSPIKIDISYCVNLTEFPKIS---------GNIIVLDLRDSAIE-EVPSSIE------------- 743 (1007)
Q Consensus 690 ~~l~~~~~~~~-~--~~L~~L~l~~~~~l~~~~~~~---------~~L~~L~l~~~~i~-~lp~~~~------------- 743 (1007)
......+..+. + ++|+.|+++++......+... .+|+.|++++|.+. .+|..+.
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 76555554443 3 789999998876544333221 14899999998664 2222211
Q ss_pred -----------------------c--cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCce
Q 037332 744 -----------------------S--LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSY 798 (1007)
Q Consensus 744 -----------------------~--l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 798 (1007)
. .++|+.|++++|......+..+..+++|+.|++++|...+..+..+..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 1 267899999998877777777888999999999998888877888889999999
Q ss_pred eccCccccccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCC
Q 037332 799 MDLSWTKIKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877 (1007)
Q Consensus 799 L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 877 (1007)
|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. +++|+.|.+++|...
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc
Confidence 99999999866 5678899999999999988776667778889999999999999887654 778888888888877
Q ss_pred cCCcccCCCCCCCEEeccCCCCCCCch--hhCCCCCcCEEEccCCCCccchhh--hcCCCCCCEEeeecCCC
Q 037332 878 VLPTLLSGLCSLTELDLKDCGIREIPQ--DIGSVFALEKIDLSGNNFETLPAS--MKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 878 ~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~n~~ 945 (1007)
.+|.. ..+++.|++++|+++.++. .+..+++|+.|+|++|+++.++.. +..+++|+.|+|++|.+
T Consensus 395 ~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 395 TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 66653 3445555555555554322 234555555566555555533221 33345555555555544
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=332.62 Aligned_cols=403 Identities=19% Similarity=0.228 Sum_probs=330.3
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCC-C-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFN-F-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L 616 (1007)
.+|++.+....+.+.+|.++++|++|++++|.+ ..++........+|++|++++|.+..+|.. + .+++|++|++
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcC----CccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 467777777778888999999999999999875 334433333446899999999999999863 3 8999999999
Q ss_pred CCCCccc--cccccccccccceeeccCCcCCCCCC-CCCCCCCC----cEEecccccccCCCCcccccCCCccEEEecCC
Q 037332 617 PHSKIKQ--IWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNL----EKINLWNCTNLAYIPCNIQNFINLGVLCFRGC 689 (1007)
Q Consensus 617 ~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L----~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 689 (1007)
++|.+.. +|..+..+++|++|++++|.+....+ .+..+++| +.|++++|......+..+..+ +|+.|++++|
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 9999986 68899999999999999998876555 35666666 788998887665555555544 6777777765
Q ss_pred CC----------------------------------------------------------CcccCCCCC-CCCCcEEecc
Q 037332 690 KS----------------------------------------------------------LKCFPHDIH-FTSPIKIDIS 710 (1007)
Q Consensus 690 ~~----------------------------------------------------------l~~~~~~~~-~~~L~~L~l~ 710 (1007)
.. ....+..+. +++|+.|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 21 011122222 6788999998
Q ss_pred ccccCCccCCccC--cceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccc--
Q 037332 711 YCVNLTEFPKISG--NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-- 786 (1007)
Q Consensus 711 ~~~~l~~~~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-- 786 (1007)
++. +..+|.... +|+.|++++|.+..+|. ..+++|+.|++++|......+. ..+++|+.|++++|......
T Consensus 291 ~~~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 291 SVT-IERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp SCE-ECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred Ccc-chhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 874 334543222 89999999999999987 5789999999999987666554 78999999999998766543
Q ss_pred ccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCcc-cChhhhcCC
Q 037332 787 PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQ-VPASIAHLN 864 (1007)
Q Consensus 787 ~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~ 864 (1007)
+..+..+++|+.|++++|.+..++..+..+++|++|++++|...+..+ ..+..+++|+.|++++|.+.. .|..+..++
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 677889999999999999999888889999999999999998777655 578999999999999999885 466788999
Q ss_pred CCCEEEecCCCCC--cCCcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEee
Q 037332 865 EVKSLSFAGCRNL--VLPTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYL 940 (1007)
Q Consensus 865 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L 940 (1007)
+|++|++++|... .+|..+..+++|+.|+|++|+++.+ |..+..+++|++|++++|+++.+|. .+..+++|+.|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999964 5888899999999999999999987 7889999999999999999997764 5789999999999
Q ss_pred ecCCCCCcCCC
Q 037332 941 INCYMLQTLPE 951 (1007)
Q Consensus 941 ~~n~~l~~~p~ 951 (1007)
++|++.+..|.
T Consensus 526 ~~N~~~~~~~~ 536 (570)
T 2z63_A 526 HTNPWDCSCPR 536 (570)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCcccCCCcc
Confidence 99999988775
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=334.02 Aligned_cols=417 Identities=16% Similarity=0.137 Sum_probs=258.3
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPH 618 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~ 618 (1007)
.++++.+....+.+.+|.++++|++|++++|.+... .+..+.. ..+|++|++++|.+..+|.. .+++|++|++++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~-l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYL---DISVFKF-NQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE---EGGGGTT-CTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCc---ChHHhhc-ccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 466677766677778888888888888888875221 1222333 35788888888888888877 888888888888
Q ss_pred CCccc--cccccccccccceeeccCCcCCCCCCCCCCCCCC--cEEecccccc--cCCCCcccccCC-CccEEEecCCCC
Q 037332 619 SKIKQ--IWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNL--EKINLWNCTN--LAYIPCNIQNFI-NLGVLCFRGCKS 691 (1007)
Q Consensus 619 ~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~l~~~~~~l~-~L~~L~l~~~~~ 691 (1007)
|.++. +|..+..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. +...+++++|..
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 88876 46778888888888888887654 345566666 8888888876 556666666554 233445555554
Q ss_pred CcccCCCC--CCCCCcEEecccccc-------CCccC--CccCcceEEEeeCCcccc-----ccccccccccccEEecCC
Q 037332 692 LKCFPHDI--HFTSPIKIDISYCVN-------LTEFP--KISGNIIVLDLRDSAIEE-----VPSSIESLTTLVKLDLSY 755 (1007)
Q Consensus 692 l~~~~~~~--~~~~L~~L~l~~~~~-------l~~~~--~~~~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~ 755 (1007)
...++... .+++|+.++++++.. ...++ ....+|+.|+++++.+.. ++..+ ..++|++|++++
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~ 256 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeec
Confidence 44333322 256667777666531 00111 123356666666655542 11111 234677777777
Q ss_pred ccccccchhhh-----hccCccceEEecCCCCCcccc-cccccC---CCCceeccCcccccccchhhhcCCCCCEEeccC
Q 037332 756 CTRLKSLSTSI-----CKLRSLYWLYLNNCSKLESFP-EILEKM---ERLSYMDLSWTKIKELKSSIDHLERLRNLKLRE 826 (1007)
Q Consensus 756 ~~~~~~l~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~l~~l---~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 826 (1007)
|...+.+|..+ ..+++|+.+++++|.. .+| ..+..+ .+|+.|++++|.+...+. ...+++|++|++++
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN 333 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence 66655666665 6667777777766655 444 333333 457777777766654431 24666777777777
Q ss_pred CCCCccCCcccCCCCCCCEEEeccccCcc---cChhhhcCCCCCEEEecCCCCCc-CCcc-cCCCCCCCEEeccCCCCCC
Q 037332 827 CSKLVSLPENLGSLKSLVYIEAERSAISQ---VPASIAHLNEVKSLSFAGCRNLV-LPTL-LSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 827 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---~~~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~L~~n~l~~ 901 (1007)
|...+..|..+..+++|+.|++++|.++. +|..+..+++|++|++++|.... +|.. +..+++|+.|++++|.++.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 76666666666777777777777776664 33456667777777777776555 5542 5666677777777776653
Q ss_pred -CchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCC-cccccccccccccccCC
Q 037332 902 -IPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPEL-PLRLKLLEARNCKQLRS 969 (1007)
Q Consensus 902 -lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~-~~~L~~L~~~~c~~l~~ 969 (1007)
+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|.. +..+..|...++.++..
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred chhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 344332 5677777777777777766667777777777777555 45532 33333333333333333
No 24
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=332.64 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=228.1
Q ss_pred cccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh---hcccCceEEEEecchhhhccCc
Q 037332 186 VTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN---FREFEGKCFVANVREESEKEGV 262 (1007)
Q Consensus 186 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~ 262 (1007)
...|..+..||||+.++++|.++|....+..++|+|+||||+||||||++++++. +.+|+..+||..++.... ...
T Consensus 117 ~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~~ 195 (591)
T 1z6t_A 117 GGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SGL 195 (591)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HHH
T ss_pred CCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HHH
Confidence 3456677889999999999999997655668999999999999999999999864 678975555544543311 111
Q ss_pred HHHHHHHHHHHHhcccc-----cccCcchHHHHHHHhCC--CcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 263 LVRLRERILSEILDENI-----KIRTPNLSECIKKRLRQ--MDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~~~~-----~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
+..+ ..+...+..... ..........++..+.+ +++||||||||+.+.++.+ ++|++||||||++
T Consensus 196 ~~~l-~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 196 LMKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHH-HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHH-HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 2222 223333332111 11112345667777755 7899999999987766532 5789999999999
Q ss_pred hhHhhcCcccEEEc---CCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHH
Q 037332 336 RVLDNFGVSNIYKV---NGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQKNKLDWEIAL 412 (1007)
Q Consensus 336 ~v~~~~~~~~~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l 412 (1007)
.++..++ ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|||++++|+.++.+. ..|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 8876543 345655 5899999999999998642 222345789999999999999999999998763 4688888
Q ss_pred HHhhhCC-----------CCchHHHHHhhhhccchhhHHHhhhhhcccCCCCH--HHHHHhhcCCCc-hhHhHHHHhhcc
Q 037332 413 ENLKLIC-----------DPDIYDVLKVSYNELKAEEKSMFLDIACFFKGEDK--DYVTMSQDDPNF-AYYVLNVLVDKS 478 (1007)
Q Consensus 413 ~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~~~~~~~-~~~~l~~L~~~~ 478 (1007)
..+.... ...+..++..||+.|+++.|.||+++|+||++..+ +.+...|..... +..+++.|++++
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 8776432 13688999999999999999999999999998665 467777876544 778899999999
Q ss_pred CeEEccCC---eEehhHHHHHHHHHHH
Q 037332 479 LVTISCFN---KLQMHDLLQEMGQEIV 502 (1007)
Q Consensus 479 li~~~~~~---~~~mH~lv~~~~~~~~ 502 (1007)
|+....++ .|+||++++++++...
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99876432 6999999999998873
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=319.07 Aligned_cols=437 Identities=15% Similarity=0.150 Sum_probs=293.6
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCC-CCCC-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTL-PFNF-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L 616 (1007)
.+|++.+....++...+ ++|+.|++++|.+..... ..+.. ..+|++|++++|.+..+ |..+ .+++|++|+|
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~---~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWT---SDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCH---HHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCcccccCh---hhccc-cccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 34555554444443333 667777777665422110 11111 23567777777766666 3333 6667777777
Q ss_pred CCCCccccccccccccccceeeccCCcCCC-CCC-CCCCCCCCcEEecccccccCCCCcccccCCCc--cEEEecCCCC-
Q 037332 617 PHSKIKQIWEGKKEAFKLKSIDLRYSQYLT-RIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINL--GVLCFRGCKS- 691 (1007)
Q Consensus 617 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L--~~L~l~~~~~- 691 (1007)
++|.++.+|.. .+++|++|++++|.+.. .+| .+..+++|++|++++|.... ..+..+++| ++|++++|..
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 77777666655 66677777777776654 233 45666677777776665432 345555666 7777766654
Q ss_pred -CcccCCCCCCC--CCcEEeccccccCCccCC----ccCcceEEEeeCCc-------cccccccccccccccEEecCCcc
Q 037332 692 -LKCFPHDIHFT--SPIKIDISYCVNLTEFPK----ISGNIIVLDLRDSA-------IEEVPSSIESLTTLVKLDLSYCT 757 (1007)
Q Consensus 692 -l~~~~~~~~~~--~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~-------i~~lp~~~~~l~~L~~L~l~~~~ 757 (1007)
....|..+... ....++++++.....++. ...+|+.|++++|. +....+.+..+++|+.|++++|.
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 33333333211 112334444433333322 34567888888775 33333367788888888888876
Q ss_pred ccccchhhhh---ccCccceEEecCCCCCccccccc-----ccCCCCceeccCcccccccc-hhhhcC---CCCCEEecc
Q 037332 758 RLKSLSTSIC---KLRSLYWLYLNNCSKLESFPEIL-----EKMERLSYMDLSWTKIKELK-SSIDHL---ERLRNLKLR 825 (1007)
Q Consensus 758 ~~~~l~~~~~---~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~l~-~~~~~l---~~L~~L~l~ 825 (1007)
.....+..+. .+++|++|++++|...+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcC
Confidence 5543332221 24689999999988877888887 8899999999999998 777 455554 789999999
Q ss_pred CCCCCccCCcccCCCCCCCEEEeccccCcc-cChhhhcCCCCCEEEecCCCCCc---CCcccCCCCCCCEEeccCCCCCC
Q 037332 826 ECSKLVSLPENLGSLKSLVYIEAERSAISQ-VPASIAHLNEVKSLSFAGCRNLV---LPTLLSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 826 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~ 901 (1007)
+|...... ....+++|+.|++++|.++. +|..+..+++|++|++++|.+.. +|..+..+++|+.|+|++|.++.
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 98764422 12688999999999999996 68888999999999999999874 45678999999999999999998
Q ss_pred -Cchh-hCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCCC---cccccccccccccccCCCCCc-c
Q 037332 902 -IPQD-IGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPEL---PLRLKLLEARNCKQLRSLPEL-P 974 (1007)
Q Consensus 902 -lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~~---~~~L~~L~~~~c~~l~~~~~~-p 974 (1007)
+|.. +..+++|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|.. +++|+.|++.+|. +..+|.. .
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKSVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc-CCccCHHHh
Confidence 8875 788999999999999996 5565443 79999999999876 77753 4566677766663 3334432 3
Q ss_pred hhccccccccccCCCceeeE
Q 037332 975 SCLKGFDALELKIPPQIGIC 994 (1007)
Q Consensus 975 ~~l~~L~~L~~~~~~~~~~~ 994 (1007)
..+.+|..|....++.-|.|
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCH
T ss_pred ccCCcccEEECcCCCCcccC
Confidence 34556777777777776655
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.9e-31 Score=304.45 Aligned_cols=346 Identities=17% Similarity=0.225 Sum_probs=247.3
Q ss_pred cCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccce
Q 037332 557 NMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKS 636 (1007)
Q Consensus 557 ~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 636 (1007)
.+++|+.|.+.+|.+. .++ ++.. .++|++|++++|.+..+|....+++|++|++++|.+..++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~----~l~-~~~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK----SID-GVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC----CCT-TGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCc----cCc-chhh-hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 3456777777666541 122 2222 24666667666666666653366666666666666666655 666666666
Q ss_pred eeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCC
Q 037332 637 IDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLT 716 (1007)
Q Consensus 637 L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~ 716 (1007)
|++++|.+... +.+..+++|++|++++|... .++ .+..+++|++|+++++ +..++.
T Consensus 117 L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~--~~~~~~------------------- 172 (466)
T 1o6v_A 117 LTLFNNQITDI-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQ--VTDLKP------------------- 172 (466)
T ss_dssp EECCSSCCCCC-GGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEES--CCCCGG-------------------
T ss_pred EECCCCCCCCC-hHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCc--ccCchh-------------------
Confidence 66666655443 33666666666666666432 233 3566666666666421 111110
Q ss_pred ccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCC
Q 037332 717 EFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERL 796 (1007)
Q Consensus 717 ~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 796 (1007)
.....+|+.|++++|.+..++. +..+++|++|++++|......| ++.+++|+.|++++|.... + ..+..+++|
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 245 (466)
T 1o6v_A 173 --LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNL 245 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred --hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCC
Confidence 1223467788888888877754 7888999999999887665544 6778899999999876554 3 357788999
Q ss_pred ceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCC
Q 037332 797 SYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 797 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
+.|++++|.+..++. +..+++|+.|++++|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|..
T Consensus 246 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 246 TDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcC
Confidence 999999999887765 7888999999999887665433 7888999999999999888766 78889999999999987
Q ss_pred CcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC
Q 037332 877 LVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 877 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
...+. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.++. +..+++|+.|++++|++.+
T Consensus 322 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 322 SDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 76655 678899999999999988874 67889999999999999886665 8889999999999998766
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.5e-31 Score=318.09 Aligned_cols=399 Identities=16% Similarity=0.193 Sum_probs=308.3
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCC--CCCC-Cccccceee
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTL--PFNF-DPENLIELN 615 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~l--p~~~-~l~~L~~L~ 615 (1007)
.++++.+....+.+.+|.++++|++|++++|.+.. ++........+|++|++++|.+..+ |..+ .+++|++|+
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 46777777777888999999999999999997633 2222122235899999999999865 4555 899999999
Q ss_pred CCCCC-ccccc-cccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcc-cccCCCccEEEecCCCC
Q 037332 616 LPHSK-IKQIW-EGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCN-IQNFINLGVLCFRGCKS 691 (1007)
Q Consensus 616 L~~~~-i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 691 (1007)
+++|. +..+| ..+..+++|++|++++|.+.+..| .+..+++|++|++++|... .+|.. ++.+++|++|++++|..
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 99998 67776 578899999999999999887666 5788999999999988643 33433 35689999999998864
Q ss_pred Ccc----cCCCCCCCCCcEEeccccccCC-------c------------------------------cCCccCcceEEEe
Q 037332 692 LKC----FPHDIHFTSPIKIDISYCVNLT-------E------------------------------FPKISGNIIVLDL 730 (1007)
Q Consensus 692 l~~----~~~~~~~~~L~~L~l~~~~~l~-------~------------------------------~~~~~~~L~~L~l 730 (1007)
... .+....+..|+.|+++++.... . .....++++.|++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 432 1111124556666655442110 0 1122345556666
Q ss_pred eCCcccccc------ccccccccccEEecCCccccccchhhh-hccCccceEEecCCCCCccccc---ccccCCCCceec
Q 037332 731 RDSAIEEVP------SSIESLTTLVKLDLSYCTRLKSLSTSI-CKLRSLYWLYLNNCSKLESFPE---ILEKMERLSYMD 800 (1007)
Q Consensus 731 ~~~~i~~lp------~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~ 800 (1007)
.++.+.... .....+.+|+.|++++|.. ..+|..+ ..+++|++|++++|...+.+|. .++.+++|+.|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 555543321 1123456789999998764 5677766 5799999999999988876643 478899999999
Q ss_pred cCcccccccc---hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCC
Q 037332 801 LSWTKIKELK---SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL 877 (1007)
Q Consensus 801 l~~n~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 877 (1007)
+++|.++.++ ..+..+++|++|++++|... .+|..+..+++|+.|++++|.++.+|..+ .++|++|++++|.+.
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCS
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChh
Confidence 9999999876 35889999999999999765 78888999999999999999999887654 379999999999877
Q ss_pred cCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCC
Q 037332 878 VLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 878 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.++ ..+++|++|+|++|+++.+|. ...+++|++|+|++|+++.+|. .+..+++|+.|++++|++.+..|
T Consensus 445 ~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 654 578999999999999999987 4679999999999999997754 58999999999999999877665
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.8e-31 Score=314.59 Aligned_cols=399 Identities=15% Similarity=0.152 Sum_probs=240.2
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPH 618 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~ 618 (1007)
.++++.+....+.+.+|.++++|++|++++|.+ ..++........+|++|++++|.+..+|.. .+++|++|++++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRI----RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC----CEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCC----CcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 456677766677777888888888888888765 233222222335788888888888888877 788888888888
Q ss_pred CCccccc--cccccccccceeeccCCcCCCCCCCCCCCCCC--cEEecccccc--cCCCCcccccCC-CccEEEecCCCC
Q 037332 619 SKIKQIW--EGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNL--EKINLWNCTN--LAYIPCNIQNFI-NLGVLCFRGCKS 691 (1007)
Q Consensus 619 ~~i~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~l~~~~~~l~-~L~~L~l~~~~~ 691 (1007)
|.+..++ ..+..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. ..-.+++++|..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 8888764 677888888888888887654 234445555 8888888766 555555555433 011223333332
Q ss_pred CcccCCC--CCCCCCcEEecccc----------------------------ccC----CccCC--ccCcceEEEeeCCcc
Q 037332 692 LKCFPHD--IHFTSPIKIDISYC----------------------------VNL----TEFPK--ISGNIIVLDLRDSAI 735 (1007)
Q Consensus 692 l~~~~~~--~~~~~L~~L~l~~~----------------------------~~l----~~~~~--~~~~L~~L~l~~~~i 735 (1007)
...++.. ..+++|+.++++++ ..- ..++. ...+|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 2211111 01334444444432 100 00000 112566666666666
Q ss_pred c-cccccc-----cccccccEEecCCccccccch-hhhhc---cCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 736 E-EVPSSI-----ESLTTLVKLDLSYCTRLKSLS-TSICK---LRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 736 ~-~lp~~~-----~~l~~L~~L~l~~~~~~~~l~-~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
. .+|..+ ..++.|+.+++..+.. .+| ..+.. ..+|+.|++++|...... ....+++|++|++++|.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence 5 566555 4555555555555433 333 12222 245677777766543221 11456677777777777
Q ss_pred ccc-cchhhhcCCCCCEEeccCCCCCc--cCCcccCCCCCCCEEEeccccCcc-cChh-hhcCCCCCEEEecCCCCC-cC
Q 037332 806 IKE-LKSSIDHLERLRNLKLRECSKLV--SLPENLGSLKSLVYIEAERSAISQ-VPAS-IAHLNEVKSLSFAGCRNL-VL 879 (1007)
Q Consensus 806 l~~-l~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~-~~~~-~~~l~~L~~L~l~~~~~~-~~ 879 (1007)
+.. +|..+..+++|+.|++++|...+ .+|..+..+++|+.|++++|.++. +|.. +..+++|++|++++|... ..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 764 55666677777777777766544 334556677777777777777765 5543 556677777777777643 22
Q ss_pred CcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCCcCC
Q 037332 880 PTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 880 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
|..+. ++|+.|+|++|+++.+|..+..+++|++|+|++|+++.+|.. +..+++|+.|++++|++....|
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 22221 567777777777777776666777777777777777777665 6667777777777776665443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.6e-30 Score=299.67 Aligned_cols=353 Identities=17% Similarity=0.205 Sum_probs=216.5
Q ss_pred CCCCceEEEecCCCCCCCC-CCC-CccccceeeCCCCCcc-cc-ccccccccccceeeccCCcCCCCCC-CCCCCCCCcE
Q 037332 585 LPEELRYFHWHGYPLKTLP-FNF-DPENLIELNLPHSKIK-QI-WEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEK 659 (1007)
Q Consensus 585 ~~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~ 659 (1007)
+|++|++|++++|.+..++ ..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|.+....| .+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 3455666666666666552 333 5666666666666654 33 3345566666666666666555444 3556666666
Q ss_pred EecccccccCCCCcc--cccCCCccEEEecCCCCCcccCCC-C-CCCCCcEEeccccccCCccCCcc-----CcceEEEe
Q 037332 660 INLWNCTNLAYIPCN--IQNFINLGVLCFRGCKSLKCFPHD-I-HFTSPIKIDISYCVNLTEFPKIS-----GNIIVLDL 730 (1007)
Q Consensus 660 L~L~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~~~l~~~~~~~-----~~L~~L~l 730 (1007)
|++++|......+.. ++.+++|++|++++|......|.. + .+++|+.|+++++......+... .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 666666544333332 556666666666665533333332 1 24555555555443222212111 23444445
Q ss_pred eCCcccccccc---------ccccccccEEecCCccccccchhhhhcc---CccceEEecCCCCCcccccccccCCCCce
Q 037332 731 RDSAIEEVPSS---------IESLTTLVKLDLSYCTRLKSLSTSICKL---RSLYWLYLNNCSKLESFPEILEKMERLSY 798 (1007)
Q Consensus 731 ~~~~i~~lp~~---------~~~l~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 798 (1007)
++|.+..++.. +..+++|++|++++|......|..+..+ ++|+.|++++|...+....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 257 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------- 257 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence 44444443321 1223444444444444444444333322 4444444444432221100
Q ss_pred eccCccccccc-chhhh--cCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCC
Q 037332 799 MDLSWTKIKEL-KSSID--HLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGC 874 (1007)
Q Consensus 799 L~l~~n~l~~l-~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~ 874 (1007)
.+.+... +..+. ..++|+.|++++|...+..|..++.+++|+.|++++|.+..+ |..+..+++|++|++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0011100 01111 246899999999888888888889999999999999998876 457888899999999999
Q ss_pred CCCcC-CcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCCcCCC
Q 037332 875 RNLVL-PTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQTLPE 951 (1007)
Q Consensus 875 ~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p~ 951 (1007)
.+..+ |..+.++++|++|+|++|+++.+ |..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|++.+..|.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 87666 55788899999999999999876 77888999999999999999988764 58899999999999999888774
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=6.1e-30 Score=293.30 Aligned_cols=365 Identities=20% Similarity=0.203 Sum_probs=199.3
Q ss_pred hhhhccCccccEEEEecccCCCcceecCCCCccCC------------CCceEEEecCCCCCCCCCCCCccccceeeCCCC
Q 037332 552 SRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLP------------EELRYFHWHGYPLKTLPFNFDPENLIELNLPHS 619 (1007)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~------------~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~ 619 (1007)
+..|.++++|++|++++|.+.+ .++..+..+. .++++|++++|.+..+|.. +++|++|++++|
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~---~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n 101 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWER---NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCN 101 (454)
T ss_dssp -------CCHHHHHHHHHHHHH---TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSS
T ss_pred ChhHhcccchhhhhccCCcccc---cCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCC
Confidence 4568888889998888876421 2333333322 1358888888888888873 578888888888
Q ss_pred CccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCC
Q 037332 620 KIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDI 699 (1007)
Q Consensus 620 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 699 (1007)
.++.+|.. +++|++|++++|.+.. +|.+ .++|++|++++|... .+| .++.+++|++|++++|. +..+|
T Consensus 102 ~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp--- 169 (454)
T 1jl5_A 102 SLTELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLP--- 169 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCC---
T ss_pred cCCccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccC---
Confidence 88887753 3788888888887654 3322 268888888887644 467 58888888888888774 22333
Q ss_pred CCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecC
Q 037332 700 HFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNN 779 (1007)
Q Consensus 700 ~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 779 (1007)
....+|++|++++|.+..+| .++.+++|+.|++++|.... +|.. .++|++|++++
T Consensus 170 --------------------~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 170 --------------------DLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp --------------------CCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred --------------------CCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 23335556666666666655 35666666666666654332 3321 23566666666
Q ss_pred CCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh
Q 037332 780 CSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS 859 (1007)
Q Consensus 780 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 859 (1007)
|... .+|. ++.+++|+.|++++|.++.+|.. +++|+.|++++|...+ +|.. +++|+.|++++|.++.+|..
T Consensus 225 n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 225 NILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp SCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC
T ss_pred CcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc
Confidence 5443 4443 55666666666666666655532 3566666666655433 3332 25566666666666554421
Q ss_pred hhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEe
Q 037332 860 IAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLY 939 (1007)
Q Consensus 860 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 939 (1007)
.++|+.|++++|....++. ..++|+.|++++|+++.+|.. +++|++|++++|+++.+|. .+++|++|+
T Consensus 296 ---~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 296 ---PPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLH 363 (454)
T ss_dssp ---CTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred ---CCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEE
Confidence 2456666666665544332 113566666666666655543 4566666666666666654 355666666
Q ss_pred eecCCCCC--cCCCCc----------------ccccccccccccccCCCCCcchhcccc
Q 037332 940 LINCYMLQ--TLPELP----------------LRLKLLEARNCKQLRSLPELPSCLKGF 980 (1007)
Q Consensus 940 L~~n~~l~--~~p~~~----------------~~L~~L~~~~c~~l~~~~~~p~~l~~L 980 (1007)
+++|++.+ .+|..+ ++|+.|++.+++ +..+|.+|.++..|
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDL 421 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhhe
Confidence 66666555 444332 445555555532 33344666655544
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.4e-29 Score=297.75 Aligned_cols=377 Identities=13% Similarity=0.068 Sum_probs=224.5
Q ss_pred CCceEEEecCCCCCCCCC-CC-CccccceeeCCCCCcccc-ccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecc
Q 037332 587 EELRYFHWHGYPLKTLPF-NF-DPENLIELNLPHSKIKQI-WEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLW 663 (1007)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~ 663 (1007)
+++++|++++|.+..++. .+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+. .+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECC
Confidence 445555555555555542 22 455555555555555544 333455555555555555543 23322 45555555555
Q ss_pred cccccC-CCCcccccCCCccEEEecCCCCCcccCCCCCCCCC--cEEecccccc--CCccCC------------------
Q 037332 664 NCTNLA-YIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSP--IKIDISYCVN--LTEFPK------------------ 720 (1007)
Q Consensus 664 ~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~------------------ 720 (1007)
+|.... .+|..++++++|++|++++|..... ....+.++ +.|+++++.. ....+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 554332 1234555555555555555432210 00112223 4444444332 111111
Q ss_pred -----------ccCcceEEEeeCCcc-----ccccccccccccccEEecCCcccccc----chhhhhccCccceEEecCC
Q 037332 721 -----------ISGNIIVLDLRDSAI-----EEVPSSIESLTTLVKLDLSYCTRLKS----LSTSICKLRSLYWLYLNNC 780 (1007)
Q Consensus 721 -----------~~~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~ 780 (1007)
...+|+.|++++|.. ...+..+..+++|+.|++.++..... ++..+ ..++|++|++++|
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n 286 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNL 286 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEecc
Confidence 223455666665531 11112233344444444433322111 11111 2236666666666
Q ss_pred CCCccccccc-----ccC--------------------------CCCceeccCcccccccchhhhcCCCCCEEeccCCCC
Q 037332 781 SKLESFPEIL-----EKM--------------------------ERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSK 829 (1007)
Q Consensus 781 ~~~~~~~~~l-----~~l--------------------------~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 829 (1007)
...+.+|..+ ..+ .+|+.|++++|.+..++. ...+++|++|++++|..
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCcc
Confidence 5555555443 233 345666666665543321 26789999999999999
Q ss_pred CccCCcccCCCCCCCEEEeccccCcccC---hhhhcCCCCCEEEecCCCCCc-CCc-ccCCCCCCCEEeccCCCCCC-Cc
Q 037332 830 LVSLPENLGSLKSLVYIEAERSAISQVP---ASIAHLNEVKSLSFAGCRNLV-LPT-LLSGLCSLTELDLKDCGIRE-IP 903 (1007)
Q Consensus 830 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~L~~n~l~~-lp 903 (1007)
.+..|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.... +|. .+.++++|+.|++++|.++. +|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 8888999999999999999999999664 567899999999999999776 665 47889999999999999974 45
Q ss_pred hhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCC-cccccccccccccccCCCCC
Q 037332 904 QDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPEL-PLRLKLLEARNCKQLRSLPE 972 (1007)
Q Consensus 904 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~-~~~L~~L~~~~c~~l~~~~~ 972 (1007)
..+. ++|++|+|++|+++.+|..+..+++|++|+|++|++. .+|.. +..++.|...+..++...+.
T Consensus 446 ~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 4433 7999999999999999988889999999999999877 56653 55555555555555544443
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.3e-30 Score=292.61 Aligned_cols=380 Identities=17% Similarity=0.158 Sum_probs=216.5
Q ss_pred cccccccceecChhhhccCccc-------------cEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCC
Q 037332 540 LNMSKIRNIHLDSRAFINMSNL-------------RLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNF 606 (1007)
Q Consensus 540 l~l~~~~~~~~~~~~f~~~~~L-------------r~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~ 606 (1007)
++++.+......+..+.++++| +.|++++|.+.. + ...+++|++|++++|.+..+|..
T Consensus 39 L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~----l----p~~~~~L~~L~l~~n~l~~lp~~- 109 (454)
T 1jl5_A 39 YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS----L----PELPPHLESLVASCNSLTELPEL- 109 (454)
T ss_dssp HHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC----C----CSCCTTCSEEECCSSCCSSCCCC-
T ss_pred hhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc----C----CCCcCCCCEEEccCCcCCccccc-
Confidence 3444443333345556666654 899999887522 2 22467999999999999999864
Q ss_pred CccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEe
Q 037332 607 DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCF 686 (1007)
Q Consensus 607 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 686 (1007)
+++|++|++++|.++.++.. .++|++|++++|.+.+ +|.+..+++|++|++++|.. ..+|..+ .+|++|++
T Consensus 110 -~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l-~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 110 -PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAA 180 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SCCCCCC---TTCCEEEC
T ss_pred -cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcC-cccCCCc---ccccEEEC
Confidence 48999999999999987643 2799999999999876 77899999999999999864 4566543 59999999
Q ss_pred cCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhh
Q 037332 687 RGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSI 766 (1007)
Q Consensus 687 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~ 766 (1007)
++|. +..+|....+++|+.|+++++. +..+|....+|+.|++++|.+..+|. ++.+++|++|++++|... .+|.
T Consensus 181 ~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~-- 254 (454)
T 1jl5_A 181 GNNQ-LEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPD-- 254 (454)
T ss_dssp CSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCS--
T ss_pred cCCc-CCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC-cccc--
Confidence 9985 4446654457778888777753 44566666677777777777777774 677777777777776443 2333
Q ss_pred hccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCC-CCCCE
Q 037332 767 CKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSL-KSLVY 845 (1007)
Q Consensus 767 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~ 845 (1007)
.+++|+.|++++|...+ +|.. +++|+.|++++|.++.++.. .++|+.|++++|...+ ++ .+ ++|+.
T Consensus 255 -~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~ 321 (454)
T 1jl5_A 255 -LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEE 321 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCE
T ss_pred -cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCE
Confidence 23566777776665443 4432 35666777776666655421 2566666666665443 11 12 35666
Q ss_pred EEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCC-cc
Q 037332 846 IEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNF-ET 924 (1007)
Q Consensus 846 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-~~ 924 (1007)
|++++|.++.+|.. +++|++|++++|....+|. .+++|+.|++++|.++.+|..- ..+..|. .|++ ..
T Consensus 322 L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip---~~l~~L~--~n~~~~~ 390 (454)
T 1jl5_A 322 LNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIP---ESVEDLR--MNSHLAE 390 (454)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCC---TTCCEEE--CCC----
T ss_pred EECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCCh---HHHHhhh--hcccccc
Confidence 66666666655543 3566666666666555555 3456666666666655532211 1122222 2222 23
Q ss_pred chhhhcCCCCCCEEeeecCCCCCcCCCCcccccccccccccccCCCC
Q 037332 925 LPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARNCKQLRSLP 971 (1007)
Q Consensus 925 lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c~~l~~~~ 971 (1007)
+|. .+++|+.|++++|++.+ +|..|.+++.|.+.+|.-....+
T Consensus 391 i~~---~~~~L~~L~ls~N~l~~-~~~iP~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 391 VPE---LPQNLKQLHVETNPLRE-FPDIPESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp -----------------------------------------------
T ss_pred ccc---ccCcCCEEECCCCcCCc-cccchhhHhheeCcCcccCCccc
Confidence 443 23789999999998765 35566778888887775443333
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.8e-29 Score=288.30 Aligned_cols=340 Identities=20% Similarity=0.251 Sum_probs=285.5
Q ss_pred CCceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEeccccc
Q 037332 587 EELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCT 666 (1007)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 666 (1007)
.+++.|++.++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 4799999999999999976689999999999999999887 8999999999999998876665 8999999999999986
Q ss_pred ccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccc
Q 037332 667 NLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLT 746 (1007)
Q Consensus 667 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~ 746 (1007)
.. .++. +..+++|++|++++|. +..++....+ .+|+.|+++ +.+..++. +..++
T Consensus 124 l~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l---------------------~~L~~L~l~-~~~~~~~~-~~~l~ 177 (466)
T 1o6v_A 124 IT-DIDP-LKNLTNLNRLELSSNT-ISDISALSGL---------------------TSLQQLSFG-NQVTDLKP-LANLT 177 (466)
T ss_dssp CC-CCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTC---------------------TTCSEEEEE-ESCCCCGG-GTTCT
T ss_pred CC-CChH-HcCCCCCCEEECCCCc-cCCChhhccC---------------------CcccEeecC-CcccCchh-hccCC
Confidence 44 4443 8899999999999875 2222221112 355666665 34455554 88999
Q ss_pred cccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccC
Q 037332 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRE 826 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 826 (1007)
+|+.|++++|.... ++ .+..+++|++|++++|...+..+ ++.+++|+.|++++|.+..++ .+..+++|+.|++++
T Consensus 178 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 178 TLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252 (466)
T ss_dssp TCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred CCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence 99999999987543 43 48899999999999987766554 778999999999999999875 588999999999999
Q ss_pred CCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhh
Q 037332 827 CSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDI 906 (1007)
Q Consensus 827 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 906 (1007)
|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|....++. +..+++|+.|+|++|+++.++. +
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~ 327 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-V 327 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-G
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-h
Confidence 98766544 8899999999999999998877 8899999999999999887766 7889999999999999998865 7
Q ss_pred CCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCC-CCccccccccccccc
Q 037332 907 GSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLP-ELPLRLKLLEARNCK 965 (1007)
Q Consensus 907 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p-~~~~~L~~L~~~~c~ 965 (1007)
..+++|+.|++++|.++.++ .+..+++|+.|++++|++.+..| ..+++|+.|++.+|+
T Consensus 328 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred ccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 89999999999999999885 78899999999999999888776 345677778777775
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.3e-28 Score=285.38 Aligned_cols=345 Identities=17% Similarity=0.182 Sum_probs=265.7
Q ss_pred ccccEEEEecccCCCcceec-CCCCccCCCCceEEEecCCCCC-CCCC-CC-CccccceeeCCCCCcccc-ccccccccc
Q 037332 559 SNLRLLKFYTCEYMSSKVHL-DQGLDYLPEELRYFHWHGYPLK-TLPF-NF-DPENLIELNLPHSKIKQI-WEGKKEAFK 633 (1007)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~l-~~~l~~~~~~L~~L~l~~~~l~-~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~ 633 (1007)
++|++|++++|.+. .+ +..+..+ .+|++|++++|.+. .++. .+ .+++|++|+|++|.+..+ |..+..+++
T Consensus 30 ~~l~~L~Ls~n~i~----~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIA----ELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCC----EECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCccC----cCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 78999999998762 33 3334433 58999999999886 5543 44 899999999999999977 678899999
Q ss_pred cceeeccCCcCCCCCC-C--CCCCCCCcEEecccccccCCCCcc-cccCCCccEEEecCCCCCcccCCCCC---CCCCcE
Q 037332 634 LKSIDLRYSQYLTRIP-E--PSEIPNLEKINLWNCTNLAYIPCN-IQNFINLGVLCFRGCKSLKCFPHDIH---FTSPIK 706 (1007)
Q Consensus 634 L~~L~L~~~~~~~~~~-~--~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~L~~ 706 (1007)
|++|++++|.+.+..+ . +..+++|++|++++|......|.. +..+++|++|++++|......+..+. ...++.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999999876444 2 789999999999999877776766 89999999999999986665555443 367888
Q ss_pred EeccccccCCccCC------------ccCcceEEEeeCCcccc-cccccccc---ccccEEecCCccccccchhhhhccC
Q 037332 707 IDISYCVNLTEFPK------------ISGNIIVLDLRDSAIEE-VPSSIESL---TTLVKLDLSYCTRLKSLSTSICKLR 770 (1007)
Q Consensus 707 L~l~~~~~l~~~~~------------~~~~L~~L~l~~~~i~~-lp~~~~~l---~~L~~L~l~~~~~~~~l~~~~~~l~ 770 (1007)
++++++.... ++. ...+|+.|++++|.+.. .|..+... ++|+.|++++|........ ...++
T Consensus 185 L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 262 (455)
T 3v47_A 185 LRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFK 262 (455)
T ss_dssp EECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSC
T ss_pred cccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhc
Confidence 9988865332 221 22579999999999874 45555544 8999999999865443110 11111
Q ss_pred ccceEEecCCCCCcccccccc--cCCCCceeccCccccccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEE
Q 037332 771 SLYWLYLNNCSKLESFPEILE--KMERLSYMDLSWTKIKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIE 847 (1007)
Q Consensus 771 ~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 847 (1007)
...+..+. ..++|+.|++++|.+..+ |..+..+++|++|++++|...+..|..+..+++|+.|+
T Consensus 263 -------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 263 -------------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp -------------CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -------------cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 11111111 236788888888888754 56678888888888888887777777888888899999
Q ss_pred eccccCccc-ChhhhcCCCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCc
Q 037332 848 AERSAISQV-PASIAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 848 l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~ 923 (1007)
+++|.++.+ +..+..+++|++|++++|.+..+ |..+.++++|++|+|++|+++.+|.. +..+++|+.|++++|.++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 998888866 45678889999999999987666 66788999999999999999988764 588999999999999887
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2e-28 Score=272.74 Aligned_cols=301 Identities=20% Similarity=0.242 Sum_probs=186.5
Q ss_pred CceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccc
Q 037332 588 ELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTN 667 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 667 (1007)
+|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+.. ++.+..+++|++|++++|..
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCC
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcc
Confidence 445555555555556554466677777777777776665 6667777777777775443 45566667777777766653
Q ss_pred cCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccccccccc
Q 037332 668 LAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTT 747 (1007)
Q Consensus 668 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 747 (1007)
. .++. +..+++|++|++++|.....+ ..+..+++
T Consensus 123 ~-~~~~-~~~l~~L~~L~l~~n~~~~~~--------------------------------------------~~~~~l~~ 156 (347)
T 4fmz_A 123 S-DISP-LANLTKMYSLNLGANHNLSDL--------------------------------------------SPLSNMTG 156 (347)
T ss_dssp C-CCGG-GTTCTTCCEEECTTCTTCCCC--------------------------------------------GGGTTCTT
T ss_pred c-Cchh-hccCCceeEEECCCCCCcccc--------------------------------------------cchhhCCC
Confidence 2 2332 556666666666655422211 11444555
Q ss_pred ccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCC
Q 037332 748 LVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLREC 827 (1007)
Q Consensus 748 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~ 827 (1007)
|++|++++|......+ +..+++|+.|++++|.... ++. +..+++|+.|++++|.+..++. +..+++|++|++++|
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN 231 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC
Confidence 5555555544332222 4555566666666554332 222 5556666666666666665544 566666677777666
Q ss_pred CCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCC-chhh
Q 037332 828 SKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREI-PQDI 906 (1007)
Q Consensus 828 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l 906 (1007)
......+ +..+++|+.|++++|.++.++ .+..+++|++|++++|....++ .+..+++|+.|++++|.++.. |..+
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 5543322 666677777777777766653 4667777777777777766654 366778888888888887754 5567
Q ss_pred CCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 907 GSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 907 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
..+++|++|++++|.++.++. +..+++|++|++++|++.
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 778888888888888887665 777888888888888653
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.3e-28 Score=295.22 Aligned_cols=421 Identities=20% Similarity=0.235 Sum_probs=276.4
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCC-C-CccccceeeC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFN-F-DPENLIELNL 616 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L 616 (1007)
.+|++.+....+.+.+|.++++|++|++++|.+ ..++.+.+.-..+|++|++++|+++.+|.. | ++++|++|+|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 578888888888888899999999999988876 345554444446889999999988888864 3 7888999999
Q ss_pred CCCCcccccc-ccccccccceeeccCCcCCCC-CC-CCCCCCCCcEEecccccccCCCCcccccCCCcc----EEEecCC
Q 037332 617 PHSKIKQIWE-GKKEAFKLKSIDLRYSQYLTR-IP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLG----VLCFRGC 689 (1007)
Q Consensus 617 ~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~-~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~----~L~l~~~ 689 (1007)
++|+++.++. .+..+++|++|++++|.+... .| .+..+++|++|++++|......+..+..+.+++ .++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9998888875 478888899999988887543 34 357788899999988876555555555544433 3444443
Q ss_pred CCCcccCCCCCCCCCcEEecccc---------------------------cc---CC-----------------------
Q 037332 690 KSLKCFPHDIHFTSPIKIDISYC---------------------------VN---LT----------------------- 716 (1007)
Q Consensus 690 ~~l~~~~~~~~~~~L~~L~l~~~---------------------------~~---l~----------------------- 716 (1007)
.....-+.......+..+.+.+. .. +.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 32111111111111111111110 00 00
Q ss_pred --------ccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccc-------------------hhhhhcc
Q 037332 717 --------EFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSL-------------------STSICKL 769 (1007)
Q Consensus 717 --------~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l-------------------~~~~~~l 769 (1007)
.......+++.+.+.++.+..++. +....+|+.|++.+|...... +.....+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred cccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 000111123344444443333322 233344445544444322111 1123356
Q ss_pred CccceEEecCCCCC--cccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEE
Q 037332 770 RSLYWLYLNNCSKL--ESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYI 846 (1007)
Q Consensus 770 ~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L 846 (1007)
++|+.|++++|... ...+..+..+.+|+.|++..+.+..++..+..+++|+.+++..|+.....+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 67777777766543 233445556677777777777777666677778888888888776655433 457788889999
Q ss_pred EeccccCccc-ChhhhcCCCCCEEEecCCCC--CcCCcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCC
Q 037332 847 EAERSAISQV-PASIAHLNEVKSLSFAGCRN--LVLPTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 847 ~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l 922 (1007)
+++.|.+..+ +..+..+++|+.|++++|.. ...|..+..+++|+.|+|++|+++.+ |..+.++++|++|+|++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 9999888854 45567788999999998873 23567788899999999999999876 56788899999999999999
Q ss_pred ccch-hhhcCCCCCCEEeeecCCCCCcCCCCc----ccccccccccc
Q 037332 923 ETLP-ASMKQLSRLRYLYLINCYMLQTLPELP----LRLKLLEARNC 964 (1007)
Q Consensus 923 ~~lp-~~~~~l~~L~~L~L~~n~~l~~~p~~~----~~L~~L~~~~c 964 (1007)
+.++ ..+..+++|++|+|++|++.+..|+.+ ++|+.|++.++
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 8775 457889999999999998888777543 45666666543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4.7e-28 Score=269.64 Aligned_cols=301 Identities=17% Similarity=0.254 Sum_probs=237.8
Q ss_pred CccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEe
Q 037332 607 DPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCF 686 (1007)
Q Consensus 607 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l 686 (1007)
.+++|++|+++++.+..++. +..+++|++|++++|.+....+ +..+++|++|++++|.. ..++ .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCch-HHcCCCcCCEEEC
Confidence 56677777777777776653 6667777777777776544333 66666666666666632 2232 3445555555544
Q ss_pred cCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhh
Q 037332 687 RGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSI 766 (1007)
Q Consensus 687 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~ 766 (1007)
++|.+..++. +..+++|++|++++|.....++. +
T Consensus 118 --------------------------------------------~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~ 151 (347)
T 4fmz_A 118 --------------------------------------------NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-L 151 (347)
T ss_dssp --------------------------------------------TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred --------------------------------------------cCCcccCchh-hccCCceeEEECCCCCCcccccc-h
Confidence 4455666665 78899999999999987777665 8
Q ss_pred hccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEE
Q 037332 767 CKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYI 846 (1007)
Q Consensus 767 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (1007)
..+++|++|++++|......+ +..+++|+.|++++|.+..++. +..+++|+.|++++|......+ +..+++|+.|
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence 899999999999987655433 8899999999999999998876 8899999999999987765443 8889999999
Q ss_pred EeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCcc-c
Q 037332 847 EAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFET-L 925 (1007)
Q Consensus 847 ~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-l 925 (1007)
++++|.++.++. +..+++|++|++++|....++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++. .
T Consensus 227 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 227 KIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred EccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcC
Confidence 999999998887 889999999999999987764 5789999999999999999985 57889999999999999985 4
Q ss_pred hhhhcCCCCCCEEeeecCCCCCcCC-CCccccccccccccc
Q 037332 926 PASMKQLSRLRYLYLINCYMLQTLP-ELPLRLKLLEARNCK 965 (1007)
Q Consensus 926 p~~~~~l~~L~~L~L~~n~~l~~~p-~~~~~L~~L~~~~c~ 965 (1007)
|..+..+++|++|++++|++.+..| ..+++|+.|++.+|+
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred hhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 5678999999999999999877666 445677777777664
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=282.31 Aligned_cols=314 Identities=20% Similarity=0.204 Sum_probs=223.9
Q ss_pred eEEEecCCCCCCCCCCCCccccceeeCCCCCccccc-cccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccc
Q 037332 590 RYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIW-EGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTN 667 (1007)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 667 (1007)
+.++++++.++.+|..+ ++++++|+|++|+++.++ ..+..+++|++|+|++|.+....| .+.++++|++|++++|..
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45677777777887654 467888888888888774 567778888888888887766555 467777788888777654
Q ss_pred cCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccc-cccccccc
Q 037332 668 LAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEV-PSSIESLT 746 (1007)
Q Consensus 668 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~ 746 (1007)
....+..+..+++|++|++++|. +..+ |..+..++
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~--------------------------------------------i~~~~~~~~~~l~ 128 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENK--------------------------------------------IVILLDYMFQDLY 128 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSC--------------------------------------------CCEECTTTTTTCT
T ss_pred CccCcccccCCCCCCEEECCCCc--------------------------------------------cccCChhHccccc
Confidence 43333445667777777666653 2222 33456666
Q ss_pred cccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCCCEEecc
Q 037332 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLR 825 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~ 825 (1007)
+|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++. .+..+++|+.|+++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 77777777766555555666777777777777766555555567777777777777777775543 56777888888888
Q ss_pred CCCCCccCCcccCCCCCCCEEEeccccCcccCh-hhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCC-
Q 037332 826 ECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREI- 902 (1007)
Q Consensus 826 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~l- 902 (1007)
+|+..+.+|.......+|+.|++++|.++.+|. .+..+++|+.|++++|.+..++. .+.++++|+.|+|++|+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 887777777766666688888888888887773 56778888888888887665544 567788888888888888875
Q ss_pred chhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCCc
Q 037332 903 PQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 903 p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~ 948 (1007)
|..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++...
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 56777888888888888888877653 57778888888888876543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-27 Score=271.12 Aligned_cols=306 Identities=16% Similarity=0.139 Sum_probs=188.4
Q ss_pred ccccceeeCCCCCccccccc-cccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEE
Q 037332 608 PENLIELNLPHSKIKQIWEG-KKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLC 685 (1007)
Q Consensus 608 l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 685 (1007)
+.++++|+++++.+..+|.. +..+++|++|++++|.+....+ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444444444433 2344444444444444433332 334444444444444443333333444444555554
Q ss_pred ecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccc-ccccccccccEEecCCccccccchh
Q 037332 686 FRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVP-SSIESLTTLVKLDLSYCTRLKSLST 764 (1007)
Q Consensus 686 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~ 764 (1007)
+++|. +..+|... .....+|++|++++|.+..++ ..+..+++|++|++++|.....
T Consensus 124 L~~n~-l~~l~~~~-------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 180 (390)
T 3o6n_A 124 LERND-LSSLPRGI-------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--- 180 (390)
T ss_dssp CCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---
T ss_pred CCCCc-cCcCCHHH-------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---
Confidence 44442 11111110 001123334444444454443 3366677777777777654432
Q ss_pred hhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCC
Q 037332 765 SICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLV 844 (1007)
Q Consensus 765 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 844 (1007)
.+..+++|+.|++++|.... +...++|+.|++++|.+..++.. .+++|+.|++++|...+. ..+..+++|+
T Consensus 181 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~ 251 (390)
T 3o6n_A 181 DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLV 251 (390)
T ss_dssp CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCcc
Confidence 24566777777777764432 23445788888888887776543 346788888888776543 4677788888
Q ss_pred EEEeccccCccc-ChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc
Q 037332 845 YIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 845 ~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
.|++++|.+..+ |..+..+++|++|++++|....+|..+..+++|+.|+|++|++..+|..+..+++|+.|++++|.++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 888888887755 6667788888888888888777777777788888888888888888888888888888888888888
Q ss_pred cchhhhcCCCCCCEEeeecCCCCC
Q 037332 924 TLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 924 ~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
.+| +..+++|+.|++++|++..
T Consensus 332 ~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 332 TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCC--CCTTCCCSEEECCSSCEEH
T ss_pred eeC--chhhccCCEEEcCCCCccc
Confidence 776 6678888888888887654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.6e-27 Score=269.61 Aligned_cols=306 Identities=14% Similarity=0.069 Sum_probs=254.3
Q ss_pred ccccccceeeccCCcCCCCCCC-CCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEE
Q 037332 629 KEAFKLKSIDLRYSQYLTRIPE-PSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKI 707 (1007)
Q Consensus 629 ~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 707 (1007)
..+.+++.|++++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|......|..+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------- 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-------- 113 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--------
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--------
Confidence 3578999999999986554443 5789999999999998666666789999999999999986332222211
Q ss_pred eccccccCCccCCccCcceEEEeeCCcccccccc-ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccc
Q 037332 708 DISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF 786 (1007)
Q Consensus 708 ~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 786 (1007)
....+|++|++++|.+..+|.. +..+++|++|++++|......+..+..+++|++|++++|.....
T Consensus 114 ------------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 180 (390)
T 3o6n_A 114 ------------QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 180 (390)
T ss_dssp ------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred ------------cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence 1234677888888999999987 58999999999999988777777899999999999999876553
Q ss_pred ccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCC
Q 037332 787 PEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEV 866 (1007)
Q Consensus 787 ~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L 866 (1007)
.+..+++|+.|++++|.+..++ ..++|++|++++|..... |. ...++|+.|++++|.++.. ..+..+++|
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L 250 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGL 250 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred --ccccccccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCc
Confidence 3677899999999999988653 456899999999876544 33 2357999999999999986 468899999
Q ss_pred CEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCC
Q 037332 867 KSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 867 ~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
++|++++|.+... |..+..+++|+.|+|++|+++.+|..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred cEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 9999999997665 678899999999999999999999888899999999999999999999899999999999999987
Q ss_pred CCcCCCCccccccccccccc
Q 037332 946 LQTLPELPLRLKLLEARNCK 965 (1007)
Q Consensus 946 l~~~p~~~~~L~~L~~~~c~ 965 (1007)
...-...+++|+.|++.+++
T Consensus 331 ~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCCTTCCCSEEECCSSC
T ss_pred ceeCchhhccCCEEEcCCCC
Confidence 76544667788888887764
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.4e-27 Score=273.89 Aligned_cols=334 Identities=16% Similarity=0.158 Sum_probs=201.9
Q ss_pred hhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCCCCcccccccccccc
Q 037332 553 RAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAF 632 (1007)
Q Consensus 553 ~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~ 632 (1007)
..+.++++|+.|++++|.+.. ++ .+..+ ++|++|++++|.+..+| ...+++|++|++++|.++.++ +..++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~----~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITD----MT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCC----CT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred cChhHcCCCCEEEccCCCccc----Ch-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCC
Confidence 356788899999998887632 22 33333 57888888888888886 447888888888888888874 77888
Q ss_pred ccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEecccc
Q 037332 633 KLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYC 712 (1007)
Q Consensus 633 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 712 (1007)
+|++|++++|.+.. +| +..+++|++|++++|.... ++ ++.+++|++|++++|..+..++ ...++
T Consensus 107 ~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~---------- 170 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQT---------- 170 (457)
T ss_dssp TCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCT----------
T ss_pred cCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCC----------
Confidence 88888888887665 33 7788888888888876443 33 7778888888888776444331 11233
Q ss_pred ccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccccccc
Q 037332 713 VNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEK 792 (1007)
Q Consensus 713 ~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 792 (1007)
+|+.|++++|.++.+| +..+++|+.|++++|..... .+..+++|+.|++++|...+ +| +..
T Consensus 171 -----------~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 171 -----------QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp -----------TCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred -----------cCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 4555556666666655 55666666666666544332 25556666666666655444 44 555
Q ss_pred CCCCceeccCcccccccchhhhcCCCCCEE----------eccCCCCCccCCcccCCCCCCCEEEeccccCc-ccChhhh
Q 037332 793 MERLSYMDLSWTKIKELKSSIDHLERLRNL----------KLRECSKLVSLPENLGSLKSLVYIEAERSAIS-QVPASIA 861 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L----------~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~ 861 (1007)
+++|+.|++++|.++.+| +..+++|+.| ++++|...+.+| ++.+++|+.|++++|... .+|.
T Consensus 232 l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--- 304 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--- 304 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---
T ss_pred cCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---
Confidence 666666666666666554 2334444443 444444444443 345555666666555422 2221
Q ss_pred cCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhh------------h
Q 037332 862 HLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPAS------------M 929 (1007)
Q Consensus 862 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~------------~ 929 (1007)
..++|+.|+ ++++++|+.|++++|+++.++ +..+++|+.|++++|+++.++.- .
T Consensus 305 ~~~~L~~L~------------l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 305 QAAGITELD------------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAE 370 (457)
T ss_dssp TTCCCSCCC------------CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEE
T ss_pred CCCcceEec------------hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEec
Confidence 112222222 233356666666666666653 56666666666666666543210 0
Q ss_pred cCCCCCCEEeeecCCCCCcCCC
Q 037332 930 KQLSRLRYLYLINCYMLQTLPE 951 (1007)
Q Consensus 930 ~~l~~L~~L~L~~n~~l~~~p~ 951 (1007)
..+..|+.+++++|.+.+.+|.
T Consensus 371 ~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 371 GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp EEEEECCCBCCBTTBEEEECCT
T ss_pred ceeeecCccccccCcEEEEcCh
Confidence 1234455666666666666663
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.8e-27 Score=272.93 Aligned_cols=332 Identities=15% Similarity=0.162 Sum_probs=211.9
Q ss_pred ccccccccceecChhhhccCccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCCCCccccceeeCCC
Q 037332 539 FLNMSKIRNIHLDSRAFINMSNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFNFDPENLIELNLPH 618 (1007)
Q Consensus 539 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~ 618 (1007)
.+|++.+....++ .|.++++|++|++++|.+... + +.. ..+|++|++++|.+..+| ...+++|++|++++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~----~--~~~-l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL----D--LSQ-NTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDT 115 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC----C--CTT-CTTCSEEECCSSCCSCCC-CTTCTTCCEEECCS
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE----c--ccc-CCCCCEEECcCCCCceee-cCCCCcCCEEECCC
Confidence 3566665544443 689999999999999986442 1 222 358999999999999987 44899999999999
Q ss_pred CCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcccCCC
Q 037332 619 SKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHD 698 (1007)
Q Consensus 619 ~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 698 (1007)
|.++.++ +..+++|++|++++|.+... +++.+++|++|++++|..+..+ .++.+++|++|++++|. ++.+| .
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~-l 187 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD-V 187 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC-C
T ss_pred CcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec-c
Confidence 9999986 88999999999999998764 4889999999999999777776 48899999999999985 33343 2
Q ss_pred CCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEec
Q 037332 699 IHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLN 778 (1007)
Q Consensus 699 ~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 778 (1007)
..+++|+.|++ ++|.+..++ +..+++|+.|++++|.... +| +..+++|+.|+++
T Consensus 188 ~~l~~L~~L~l---------------------~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 188 SQNKLLNRLNC---------------------DTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TTCTTCCEEEC---------------------CSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred ccCCCCCEEEC---------------------cCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 22444555554 444444442 4445555555555544333 33 4445555555555
Q ss_pred CCCCCcccccccccCC-------CCceeccCccccc-ccchhhhcCCCCCEEeccCCCCCccCCcc--------cCCCCC
Q 037332 779 NCSKLESFPEILEKME-------RLSYMDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLPEN--------LGSLKS 842 (1007)
Q Consensus 779 ~~~~~~~~~~~l~~l~-------~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--------l~~l~~ 842 (1007)
+|...+..+..+..++ +|+.|++++|.+. .+| +..+++|+.|++++|...+.+|.. ++.+++
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 5444332221111111 3455555555433 333 456788888888888777666542 233344
Q ss_pred CCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCC
Q 037332 843 LVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 843 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l 922 (1007)
|+.|++++|.++.++ +..+++|+.|++++|.+.. ++.|..|.+++|.+... +.+..|..+++++|++
T Consensus 320 L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 320 LVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSL 386 (457)
T ss_dssp CCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBE
T ss_pred CCEEECCCCcccccc--cccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec----ceeeecCccccccCcE
Confidence 555555555555442 4445555555555544332 22334444444444322 2345678889999999
Q ss_pred c-cchhhh
Q 037332 923 E-TLPASM 929 (1007)
Q Consensus 923 ~-~lp~~~ 929 (1007)
+ .+|..+
T Consensus 387 ~g~ip~~~ 394 (457)
T 3bz5_A 387 TIAVSPDL 394 (457)
T ss_dssp EEECCTTC
T ss_pred EEEcChhH
Confidence 8 787654
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.8e-27 Score=280.58 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=230.7
Q ss_pred CccccceeeCCCCCccccccc-cccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEE
Q 037332 607 DPENLIELNLPHSKIKQIWEG-KKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVL 684 (1007)
Q Consensus 607 ~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 684 (1007)
.+.+++.|++++|.+..+|.. +..+++|++|+|++|.+....| .+..+++|++|+|++|......|..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 455666666666666666654 3556667777776666655544 45666677777777666555455556667777777
Q ss_pred EecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccc-cccccccccEEecCCccccccch
Q 037332 685 CFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCTRLKSLS 763 (1007)
Q Consensus 685 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~ 763 (1007)
++++|. +..+|... .....+|++|++++|.+..+++ .+..+++|++|++++|.....
T Consensus 129 ~L~~n~-l~~l~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 186 (597)
T 3oja_B 129 VLERND-LSSLPRGI-------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-- 186 (597)
T ss_dssp ECCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred EeeCCC-CCCCCHHH-------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--
Confidence 776653 22222211 0112345555666666766654 588899999999999865543
Q ss_pred hhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCC
Q 037332 764 TSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSL 843 (1007)
Q Consensus 764 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 843 (1007)
.+..+++|+.|++++|...+ +...++|+.|++++|.+..++..+ .++|+.|++++|...+ +..+..+++|
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L 256 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGL 256 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTC
T ss_pred -ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCC
Confidence 25678899999999875543 345678999999999998777544 4789999999998765 4678899999
Q ss_pred CEEEeccccCccc-ChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCC
Q 037332 844 VYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 844 ~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l 922 (1007)
+.|++++|.+..+ |..+..+++|+.|++++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 9999999999865 678889999999999999988888888889999999999999999999898999999999999999
Q ss_pred ccchhhhcCCCCCCEEeeecCCCCC
Q 037332 923 ETLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 923 ~~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
+.+| +..+++|+.|+|++|++..
T Consensus 337 ~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCcC--hhhcCCCCEEEeeCCCCCC
Confidence 8876 6778999999999998764
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.2e-27 Score=282.88 Aligned_cols=428 Identities=17% Similarity=0.149 Sum_probs=280.6
Q ss_pred ccccEEEEecccCCCcceecCCCCccCCCCceEEEecCCCCCCCCCC-C-CccccceeeCCCCCcccccc-ccccccccc
Q 037332 559 SNLRLLKFYTCEYMSSKVHLDQGLDYLPEELRYFHWHGYPLKTLPFN-F-DPENLIELNLPHSKIKQIWE-GKKEAFKLK 635 (1007)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~l~~~l~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~ 635 (1007)
.+++.|+|++|.+ ..++...+.-.++|++|++++|.++.+|.. | ++++|++|+|++|+|+.+|. .+..+++|+
T Consensus 52 ~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4688888888876 344443333335788888888888888754 4 78888888888888888875 467888888
Q ss_pred eeeccCCcCCCCCC-CCCCCCCCcEEecccccccC-CCCcccccCCCccEEEecCCCCCcccCCCCC-CCC----CcEEe
Q 037332 636 SIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLA-YIPCNIQNFINLGVLCFRGCKSLKCFPHDIH-FTS----PIKID 708 (1007)
Q Consensus 636 ~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~----L~~L~ 708 (1007)
+|+|++|.+....+ .++++++|++|++++|.... .+|..++.+++|++|++++|......+..+. +.. ...++
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 88888888766555 36888888888888886543 3577788888888888888764433333321 111 22333
Q ss_pred ccccccCCccCC---ccCcceEEEeeCCccc--cccccccc---------------------------------------
Q 037332 709 ISYCVNLTEFPK---ISGNIIVLDLRDSAIE--EVPSSIES--------------------------------------- 744 (1007)
Q Consensus 709 l~~~~~l~~~~~---~~~~L~~L~l~~~~i~--~lp~~~~~--------------------------------------- 744 (1007)
++.. .+..++. ....+..+++.+|... ..+..+..
T Consensus 208 ls~n-~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 208 LSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp CTTC-CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred cccC-cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 4332 1222221 1123455666554322 01111111
Q ss_pred ------------------cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccc-------------------
Q 037332 745 ------------------LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFP------------------- 787 (1007)
Q Consensus 745 ------------------l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 787 (1007)
+.+++.+.+.++..... ..+.....|+.|++.+|......+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 12223333333221111 123344566667666654322111
Q ss_pred cccccCCCCceeccCcccccc---cchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc--Chhhhc
Q 037332 788 EILEKMERLSYMDLSWTKIKE---LKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV--PASIAH 862 (1007)
Q Consensus 788 ~~l~~l~~L~~L~l~~n~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~ 862 (1007)
.....+++|+.|+++.|.+.. .+.....+.+|+.|++..|.... .+..+..+++|+.+++..+..... +..+..
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 122356777888888777652 34556677788888887765433 445677888999999988876643 245678
Q ss_pred CCCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCC--CchhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEE
Q 037332 863 LNEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIRE--IPQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYL 938 (1007)
Q Consensus 863 l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L 938 (1007)
+++++.++++.|..... +..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|+++.+ |..+.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 89999999999986544 5567889999999999997543 577889999999999999999976 5678999999999
Q ss_pred eeecCCCCCcCCCCcccccccccccccccCCCCCcchhc----cccccccccCCCceeeE
Q 037332 939 YLINCYMLQTLPELPLRLKLLEARNCKQLRSLPELPSCL----KGFDALELKIPPQIGIC 994 (1007)
Q Consensus 939 ~L~~n~~l~~~p~~~~~L~~L~~~~c~~l~~~~~~p~~l----~~L~~L~~~~~~~~~~~ 994 (1007)
+|++|++.+..|..+..|+.|+..++..++.....|..+ .+|+.|....+++.|.|
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999998877767666555555555555554444334433 45677888889988877
No 45
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=9.4e-30 Score=242.70 Aligned_cols=129 Identities=19% Similarity=0.380 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCCCCccccEEEcCccccccCchhHHHHHHHHhCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecC
Q 037332 3 ASSSSSSSSRLNSQYKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSK 81 (1007)
Q Consensus 3 ~~~~~~~~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~ 81 (1007)
+|+|++++...++.++|||||||+|+| +..|+.+|+++|+++|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|+
T Consensus 5 ~~~s~~s~~~~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~ 83 (154)
T 3h16_A 5 PTAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLST 83 (154)
T ss_dssp -------------CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEH
T ss_pred CCCCCCCccccCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCc
Confidence 343343333356789999999999999 56899999999999999999999 9999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhcCCCeEEEEEEeeCCCccccccCchHHHHHH
Q 037332 82 NYASSKWCLDELVKILECKNMNDQVVVPVFYHVDPSDVRKQTGSFGDAFSK 132 (1007)
Q Consensus 82 ~~~~s~~c~~el~~~~~~~~~~~~~v~pvf~~v~~~~vr~~~~~~~~~~~~ 132 (1007)
+|+.|.||+.|+..++++...++++|+||||+|+|++||+|.|.|++++..
T Consensus 84 ~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 84 HFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred chhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 999999999999999998777778899999999999999999999887653
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.1e-27 Score=281.22 Aligned_cols=304 Identities=13% Similarity=0.112 Sum_probs=242.6
Q ss_pred CCceEEEecCCCCCCCCCCC--CccccceeeCCCCCcccccc-ccccccccceeeccCCcCCCCCCC-CCCCCCCcEEec
Q 037332 587 EELRYFHWHGYPLKTLPFNF--DPENLIELNLPHSKIKQIWE-GKKEAFKLKSIDLRYSQYLTRIPE-PSEIPNLEKINL 662 (1007)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L 662 (1007)
.+++.|+++++.+..+|..+ .+++|++|+|++|.+..++. .+..+++|++|+|++|.+....|. ++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 36777777777777777654 67888888888888887764 677888888888888887776664 578888888888
Q ss_pred ccccccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccc
Q 037332 663 WNCTNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSI 742 (1007)
Q Consensus 663 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~ 742 (1007)
++|......+..++.+++|++|++++|......|..+. ...+|+.|++++|.+..++ +
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------~l~~L~~L~L~~N~l~~~~--~ 188 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--------------------ATTSLQNLQLSSNRLTHVD--L 188 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--------------------TCTTCCEEECTTSCCSBCC--G
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--------------------cCCcCcEEECcCCCCCCcC--h
Confidence 88765433334457888888888888753332222221 1234556666667777665 6
Q ss_pred cccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEE
Q 037332 743 ESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNL 822 (1007)
Q Consensus 743 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 822 (1007)
..+++|+.|++++|.... +...++|+.|++++|..... +..+ .++|+.|++++|.++.. ..+..+++|+.|
T Consensus 189 ~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L 259 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEV 259 (597)
T ss_dssp GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEE
Confidence 678999999999975443 34567899999999876543 3222 36899999999999975 678999999999
Q ss_pred eccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCC
Q 037332 823 KLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREI 902 (1007)
Q Consensus 823 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l 902 (1007)
++++|...+..|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|+|++|.++.+
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 99999999888999999999999999999999999888889999999999999999998888999999999999999988
Q ss_pred chhhCCCCCcCEEEccCCCCc
Q 037332 903 PQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 903 p~~l~~l~~L~~L~L~~n~l~ 923 (1007)
| +..+++|+.|+|++|.+.
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEE
T ss_pred C--hhhcCCCCEEEeeCCCCC
Confidence 6 678999999999999987
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=269.80 Aligned_cols=309 Identities=20% Similarity=0.197 Sum_probs=257.9
Q ss_pred cceeeCCCCCccccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecCC
Q 037332 611 LIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGC 689 (1007)
Q Consensus 611 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~ 689 (1007)
-+.++.++++++.+|..+. ++++.|+|++|.+....+ .+..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4578888888888887653 588899999988776655 5778888888888888666556777777777777776654
Q ss_pred CCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc-ccccccccEEecCCccccccchhhhhc
Q 037332 690 KSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKSLSTSICK 768 (1007)
Q Consensus 690 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~ 768 (1007)
.+..+|.. +.++++|++|++++|......+..+..
T Consensus 91 --------------------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 91 --------------------------------------------RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp --------------------------------------------CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred --------------------------------------------cCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence 45555543 688999999999999888888888999
Q ss_pred cCccceEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEE
Q 037332 769 LRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIE 847 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 847 (1007)
+++|+.|++++|......+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|......+..+..+++|+.|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 9999999999998888778889999999999999999998875 588999999999999998887778899999999999
Q ss_pred eccccCc-ccChhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCcc
Q 037332 848 AERSAIS-QVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFET 924 (1007)
Q Consensus 848 l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 924 (1007)
+++|... .++.......+|++|++++|.+..+|. .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+++.
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 9998654 677766677799999999999888884 68899999999999999998754 57899999999999999996
Q ss_pred c-hhhhcCCCCCCEEeeecCCCCCcCCCCc---cccccccccccc
Q 037332 925 L-PASMKQLSRLRYLYLINCYMLQTLPELP---LRLKLLEARNCK 965 (1007)
Q Consensus 925 l-p~~~~~l~~L~~L~L~~n~~l~~~p~~~---~~L~~L~~~~c~ 965 (1007)
+ |..+..+++|+.|+|++|.+.+..+..+ ++|+.|++.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 6 6678999999999999998776555443 566666665543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=9.8e-26 Score=248.72 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=184.8
Q ss_pred ccceeeCCCCCccccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecC
Q 037332 610 NLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRG 688 (1007)
Q Consensus 610 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~ 688 (1007)
+|+.++++++.++.+|..+. ++|++|++++|.+....+ .+..+++|++|++++|......|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 44455555555555544332 355555555555444433 355566666666666554444456666666666666655
Q ss_pred CCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhc
Q 037332 689 CKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICK 768 (1007)
Q Consensus 689 ~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 768 (1007)
|. +..+|..+. ++|++|++++|......+..+.+
T Consensus 110 n~--------------------------------------------l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 110 NQ--------------------------------------------LKELPEKMP--KTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp SC--------------------------------------------CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTT
T ss_pred Cc--------------------------------------------CCccChhhc--ccccEEECCCCcccccCHhHhcC
Confidence 43 222332222 45566666665554444455666
Q ss_pred cCccceEEecCCCCCc--ccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEE
Q 037332 769 LRSLYWLYLNNCSKLE--SFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYI 846 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (1007)
+++|+.|++++|.... ..+..+..+++|+.|++++|.++.+|..+. ++|++|++++|...+..|..+..+++|+.|
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 6677777776665532 445667777777788887777777766543 778888888887776667778888888888
Q ss_pred EeccccCcccCh-hhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchh-hC------CCCCcCEEEcc
Q 037332 847 EAERSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQD-IG------SVFALEKIDLS 918 (1007)
Q Consensus 847 ~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~------~l~~L~~L~L~ 918 (1007)
++++|.++.++. .+..+++|++|++++|.+..+|..+..+++|++|+|++|.++.++.. +. ..++|+.|+++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 888888886654 57778888888888888888888788888888888888888877543 21 24678888888
Q ss_pred CCCCcc---chhhhcCCCCCCEEeeecCC
Q 037332 919 GNNFET---LPASMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 919 ~n~l~~---lp~~~~~l~~L~~L~L~~n~ 944 (1007)
+|.+.. .|..+..+++|+.++|++|+
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCcccccccCccccccccceeEEEecccC
Confidence 887762 34567778888888888874
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=6.8e-26 Score=250.13 Aligned_cols=284 Identities=16% Similarity=0.152 Sum_probs=176.8
Q ss_pred ccceeeCCCCCccccccccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccccccCCCCcccccCCCccEEEecC
Q 037332 610 NLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRG 688 (1007)
Q Consensus 610 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~ 688 (1007)
+|+.++++++.++.+|..+. ++|++|++++|.+....| .+..+++|++|++++|......|..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56777777777777766553 567777777777655544 467777777777777765555566777777777777766
Q ss_pred CCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhc
Q 037332 689 CKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICK 768 (1007)
Q Consensus 689 ~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 768 (1007)
|. +..+|..+. ++|++|++++|......+..+..
T Consensus 112 n~--------------------------------------------l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~ 145 (332)
T 2ft3_A 112 NH--------------------------------------------LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSG 145 (332)
T ss_dssp SC--------------------------------------------CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSS
T ss_pred Cc--------------------------------------------CCccCcccc--ccCCEEECCCCccCccCHhHhCC
Confidence 53 222222222 34444444444333222233444
Q ss_pred cCccceEEecCCCCC--cccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEE
Q 037332 769 LRSLYWLYLNNCSKL--ESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYI 846 (1007)
Q Consensus 769 l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (1007)
+++|+.|++++|... +..+..+..+ +|+.|++++|.++.+|..+. ++|++|++++|...+..+..+..+++|+.|
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 555555555554442 2334445555 66677777776666665443 567777777776666666667777777777
Q ss_pred EeccccCcccCh-hhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchh-hCC------CCCcCEEEcc
Q 037332 847 EAERSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQD-IGS------VFALEKIDLS 918 (1007)
Q Consensus 847 ~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~------l~~L~~L~L~ 918 (1007)
++++|.++.++. .+..+++|+.|++++|....+|..+..+++|+.|+|++|.++.++.. +.. .++|+.|+++
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 777777776653 56677777777777777777777777777777777777777766432 222 4567888888
Q ss_pred CCCCc--c-chhhhcCCCCCCEEeeecCC
Q 037332 919 GNNFE--T-LPASMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 919 ~n~l~--~-lp~~~~~l~~L~~L~L~~n~ 944 (1007)
+|.+. . .|..+..+++|+.|++++|+
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccCcccccccchhhhhhccccc
Confidence 88776 3 34557778888888888774
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.4e-25 Score=244.68 Aligned_cols=244 Identities=21% Similarity=0.298 Sum_probs=218.3
Q ss_pred CcceEEEeeCCccc---cccccccccccccEEecCC-ccccccchhhhhccCccceEEecCCCCCcccccccccCCCCce
Q 037332 723 GNIIVLDLRDSAIE---EVPSSIESLTTLVKLDLSY-CTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSY 798 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 798 (1007)
.+++.|+++++.+. .+|..+..+++|++|++++ |.....+|..++++++|++|++++|...+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47889999999998 5899999999999999995 7777789999999999999999999888899999999999999
Q ss_pred eccCccccc-ccchhhhcCCCCCEEeccCCCCCccCCcccCCCC-CCCEEEeccccCc-ccChhhhcCCCCCEEEecCCC
Q 037332 799 MDLSWTKIK-ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLK-SLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCR 875 (1007)
Q Consensus 799 L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~ 875 (1007)
|++++|.+. .+|..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.++ .+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999 7889999999999999999999889999999998 9999999999998 7788888887 9999999999
Q ss_pred CC-cCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCCC-
Q 037332 876 NL-VLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPEL- 952 (1007)
Q Consensus 876 ~~-~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~~- 952 (1007)
.. ..|..+..+++|+.|+|++|.++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 65 4667889999999999999999977666889999999999999998 88999999999999999999999999865
Q ss_pred -ccccccccccccccc
Q 037332 953 -PLRLKLLEARNCKQL 967 (1007)
Q Consensus 953 -~~~L~~L~~~~c~~l 967 (1007)
+++|+.|.+.+++.+
T Consensus 289 ~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCL 304 (313)
T ss_dssp TGGGSCGGGTCSSSEE
T ss_pred cccccChHHhcCCCCc
Confidence 344555555544433
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8.2e-24 Score=233.30 Aligned_cols=283 Identities=17% Similarity=0.225 Sum_probs=211.8
Q ss_pred CceEEEecCCCCCCCCCCCCccccceeeCCCCCcccccc-ccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccc
Q 037332 588 ELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWE-GKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNC 665 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 665 (1007)
+++.++++++.+..+|..+ .++|++|++++|+++.++. .+..+++|++|++++|.+....| .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5778888888888888665 3688888999988888865 57888899999999888877655 5788899999999887
Q ss_pred cccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccc-cccc
Q 037332 666 TNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPS-SIES 744 (1007)
Q Consensus 666 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~ 744 (1007)
.. ..+|..+. ++|++|+++ +|.+..++. .+..
T Consensus 111 ~l-~~l~~~~~--~~L~~L~l~--------------------------------------------~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 111 QL-KELPEKMP--KTLQELRVH--------------------------------------------ENEITKVRKSVFNG 143 (330)
T ss_dssp CC-SBCCSSCC--TTCCEEECC--------------------------------------------SSCCCBBCHHHHTT
T ss_pred cC-CccChhhc--ccccEEECC--------------------------------------------CCcccccCHhHhcC
Confidence 53 34554332 444444444 444555543 3677
Q ss_pred cccccEEecCCccccc--cchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccccc-chhhhcCCCCCE
Q 037332 745 LTTLVKLDLSYCTRLK--SLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKEL-KSSIDHLERLRN 821 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~ 821 (1007)
+++|+.|++++|.... ..+..+..+++|++|++++|... .+|..+. ++|+.|++++|.++.+ +..+..+++|++
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 7788888888776543 45566778888888888887544 3554433 7888888888888866 467888888999
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCc-ccC------CCCCCCEEec
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLS------GLCSLTELDL 894 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~------~l~~L~~L~L 894 (1007)
|++++|...+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|.+..++. .+. ..++|+.|++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 999888877766777888889999999999988888888888999999999988776654 232 2478999999
Q ss_pred cCCCCCC--C-chhhCCCCCcCEEEccCCC
Q 037332 895 KDCGIRE--I-PQDIGSVFALEKIDLSGNN 921 (1007)
Q Consensus 895 ~~n~l~~--l-p~~l~~l~~L~~L~L~~n~ 921 (1007)
++|.+.. + |..+..+.+|+.++|++|+
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 9998874 3 5678889999999999884
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=3.1e-27 Score=274.34 Aligned_cols=367 Identities=15% Similarity=0.140 Sum_probs=253.2
Q ss_pred CCCceEEEecCCCCCCCCCC--C-CccccceeeCCCCCcc-----ccccccccccccceeeccCCcCCCCCC-CC-CCCC
Q 037332 586 PEELRYFHWHGYPLKTLPFN--F-DPENLIELNLPHSKIK-----QIWEGKKEAFKLKSIDLRYSQYLTRIP-EP-SEIP 655 (1007)
Q Consensus 586 ~~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~-~~l~ 655 (1007)
|++|++|+++++.+...+.. + .+++|++|++++|.+. .++..+..+++|++|++++|.+....+ .+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34677777777776654422 2 5678888888888877 446666777888888888877643222 11 1222
Q ss_pred ----CCcEEecccccccC----CCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceE
Q 037332 656 ----NLEKINLWNCTNLA----YIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIV 727 (1007)
Q Consensus 656 ----~L~~L~L~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~ 727 (1007)
+|++|++++|.... .++..+..+++|++|++++|......+..+. ..+.....+|++
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~---------------~~l~~~~~~L~~ 146 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC---------------EGLLDPQCRLEK 146 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH---------------HHHTSTTCCCCE
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH---------------HHHhcCCCcceE
Confidence 68888888886542 4566777888888888887752211000000 000111235667
Q ss_pred EEeeCCcccc-----ccccccccccccEEecCCccccccchhhhh-----ccCccceEEecCCCCCcc----cccccccC
Q 037332 728 LDLRDSAIEE-----VPSSIESLTTLVKLDLSYCTRLKSLSTSIC-----KLRSLYWLYLNNCSKLES----FPEILEKM 793 (1007)
Q Consensus 728 L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l 793 (1007)
|++++|.+.. ++..+..+++|++|++++|......+..+. .+++|++|++++|..... ++..+..+
T Consensus 147 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred EECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 7777777663 456677789999999999876554333333 356899999999876653 56777888
Q ss_pred CCCceeccCccccccc-----ch-hhhcCCCCCEEeccCCCCCcc----CCcccCCCCCCCEEEeccccCccc-----Ch
Q 037332 794 ERLSYMDLSWTKIKEL-----KS-SIDHLERLRNLKLRECSKLVS----LPENLGSLKSLVYIEAERSAISQV-----PA 858 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l-----~~-~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~-----~~ 858 (1007)
++|+.|++++|.+... .. ....+++|++|++++|..... ++..+..+++|+.|++++|.++.. ..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 9999999999988743 12 233588999999999876553 566777789999999999988732 22
Q ss_pred hhh-cCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCCCCCCC-c----hhhCC-CCCcCEEEccCCCCc---
Q 037332 859 SIA-HLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDCGIREI-P----QDIGS-VFALEKIDLSGNNFE--- 923 (1007)
Q Consensus 859 ~~~-~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~l-p----~~l~~-l~~L~~L~L~~n~l~--- 923 (1007)
.+. ..++|++|++++|.... ++..+..+++|++|+|++|.+++. + ..+.. .++|++|++++|.++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 222 23699999999998653 355567789999999999988753 2 23332 679999999999998
Q ss_pred --cchhhhcCCCCCCEEeeecCCCCCc--------CCCCccccccccccccccc
Q 037332 924 --TLPASMKQLSRLRYLYLINCYMLQT--------LPELPLRLKLLEARNCKQL 967 (1007)
Q Consensus 924 --~lp~~~~~l~~L~~L~L~~n~~l~~--------~p~~~~~L~~L~~~~c~~l 967 (1007)
.+|..+..+++|++|++++|++... +|....+|+.|.+.++...
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 6788888899999999999987653 4444556788877776544
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.8e-25 Score=242.30 Aligned_cols=211 Identities=16% Similarity=0.234 Sum_probs=145.1
Q ss_pred ccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccccc-ccchhhhcC
Q 037332 738 VPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIK-ELKSSIDHL 816 (1007)
Q Consensus 738 lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~l 816 (1007)
+|..+..+++|++|++++|.....+|..+.++++|++|++++|...+.+|..+..+++|++|++++|.+. .+|..+..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 3444555555555555555555455555555666666666665555555556666666666666666665 556666666
Q ss_pred C-CCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCc-ccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEec
Q 037332 817 E-RLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS-QVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDL 894 (1007)
Q Consensus 817 ~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L 894 (1007)
+ +|+.|++++|...+.+|..+..++ |+.|++++|.++ ..|..+..+++|+.|++++|.....+..+..+++|++|+|
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence 5 666666666666656666666665 677777777666 3455566777777777777775544444777889999999
Q ss_pred cCCCCC-CCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCC
Q 037332 895 KDCGIR-EIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 895 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
++|.++ .+|..+..+++|++|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 252 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999998 68888999999999999999998 67754 788999999999998554433
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=4.6e-24 Score=235.40 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=202.3
Q ss_pred CceEEEecCCCCCCCCCCCCccccceeeCCCCCccccc-cccccccccceeeccCCcCCCCCC-CCCCCCCCcEEecccc
Q 037332 588 ELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIW-EGKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNC 665 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 665 (1007)
+++.++++++.++.+|..+ .++|++|++++|.+..++ ..+..+++|++|++++|.+....| .+..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4677777778888887665 367888888888888774 467888888888888888776655 4678888888888887
Q ss_pred cccCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc-ccc
Q 037332 666 TNLAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-IES 744 (1007)
Q Consensus 666 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~ 744 (1007)
.. ..+|..+. ++|++|++++ |.+..+|.. +..
T Consensus 113 ~l-~~l~~~~~--~~L~~L~l~~--------------------------------------------n~i~~~~~~~~~~ 145 (332)
T 2ft3_A 113 HL-VEIPPNLP--SSLVELRIHD--------------------------------------------NRIRKVPKGVFSG 145 (332)
T ss_dssp CC-CSCCSSCC--TTCCEEECCS--------------------------------------------SCCCCCCSGGGSS
T ss_pred cC-CccCcccc--ccCCEEECCC--------------------------------------------CccCccCHhHhCC
Confidence 53 35554332 4444444443 445555443 666
Q ss_pred cccccEEecCCccccc--cchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccc-hhhhcCCCCCE
Q 037332 745 LTTLVKLDLSYCTRLK--SLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELK-SSIDHLERLRN 821 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~ 821 (1007)
+++|++|++++|.... ..+..+..+ +|+.|++++|.... +|..+. ++|+.|++++|.+..++ ..+..+++|+.
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 7777777777766532 445556666 77777777765443 554433 67888888888888665 56778888888
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCc-ccCC------CCCCCEEec
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLSG------LCSLTELDL 894 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~------l~~L~~L~L 894 (1007)
|++++|...+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++. .+.. .++|+.|++
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 888888777766677888888888888888888888888888889999998888766653 2322 477999999
Q ss_pred cCCCCC--CC-chhhCCCCCcCEEEccCCC
Q 037332 895 KDCGIR--EI-PQDIGSVFALEKIDLSGNN 921 (1007)
Q Consensus 895 ~~n~l~--~l-p~~l~~l~~L~~L~L~~n~ 921 (1007)
++|.+. .+ |..+..+++|+.|++++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 999887 33 6678889999999999874
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.1e-24 Score=235.33 Aligned_cols=218 Identities=28% Similarity=0.412 Sum_probs=149.3
Q ss_pred cccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccC
Q 037332 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRE 826 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 826 (1007)
+++.|++++|... .+|..+.++++|++|++++|... .+|..++.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 3444444443322 33434444444555555444433 445555555556666666666665666666666666666666
Q ss_pred CCCCccCCcccC---------CCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCC
Q 037332 827 CSKLVSLPENLG---------SLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDC 897 (1007)
Q Consensus 827 ~~~~~~~~~~l~---------~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n 897 (1007)
|+..+.+|..+. .+++|+.|++++|.++.+|..+..+++|++|++++|....+|..+..+++|++|+|++|
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 666666665544 37888888888888888888888888888888888887777777778888888888887
Q ss_pred CCC-CCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCCCCcCCCCcccccccccccccc
Q 037332 898 GIR-EIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARNCKQ 966 (1007)
Q Consensus 898 ~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c~~ 966 (1007)
++. .+|..++.+++|++|+|++|++. .+|..+..+++|+.|+|++|++++.+|..+..|..|....++.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 665 46777888888888888887655 6777788888888888888888888887777777766665553
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.1e-23 Score=244.48 Aligned_cols=265 Identities=18% Similarity=0.187 Sum_probs=151.6
Q ss_pred CceEEEecCCCCCCCCCCCCccccceeeCCCCCccccccccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccccc
Q 037332 588 ELRYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWEGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTN 667 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 667 (1007)
.++.|+++++.++.+|..+. ++|++|++++|+++.+|. .+++|++|+|++|.+.. +|. .+++|++|++++|..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCcC
Confidence 57788888888888887654 677888888777777765 45666666666665432 332 444555555544421
Q ss_pred cCCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccccccccc
Q 037332 668 LAYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSSIESLTT 747 (1007)
Q Consensus 668 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 747 (1007)
..+|. ...+|+.|++++|.+..+|.. +++
T Consensus 114 -~~l~~-----------------------------------------------~l~~L~~L~L~~N~l~~lp~~---l~~ 142 (622)
T 3g06_A 114 -THLPA-----------------------------------------------LPSGLCKLWIFGNQLTSLPVL---PPG 142 (622)
T ss_dssp -CCCCC-----------------------------------------------CCTTCCEEECCSSCCSCCCCC---CTT
T ss_pred -CCCCC-----------------------------------------------CCCCcCEEECCCCCCCcCCCC---CCC
Confidence 11221 122344444444555555542 245
Q ss_pred ccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCC
Q 037332 748 LVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLREC 827 (1007)
Q Consensus 748 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~ 827 (1007)
|++|++++|... .+|. .++ +|+.|++++|.++.+| ..+++|+.|++++|
T Consensus 143 L~~L~Ls~N~l~-~l~~---~~~------------------------~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 143 LQELSVSDNQLA-SLPA---LPS------------------------ELCKLWAYNNQLTSLP---MLPSGLQELSVSDN 191 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCT------------------------TCCEEECCSSCCSCCC---CCCTTCCEEECCSS
T ss_pred CCEEECcCCcCC-CcCC---ccC------------------------CCCEEECCCCCCCCCc---ccCCCCcEEECCCC
Confidence 555555554322 2221 123 4444444444444444 23445555555554
Q ss_pred CCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhC
Q 037332 828 SKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIG 907 (1007)
Q Consensus 828 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~ 907 (1007)
...+ +|. .+++|+.|++++|.++.+|.. +++|++|++++|.+..+| ..+++|+.|+|++|.++.+|.
T Consensus 192 ~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--- 258 (622)
T 3g06_A 192 QLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--- 258 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---
T ss_pred CCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---
Confidence 4332 222 124566666666666655532 356666777666666555 345667777777777777665
Q ss_pred CCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCcc
Q 037332 908 SVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELPL 954 (1007)
Q Consensus 908 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~ 954 (1007)
.+++|+.|+|++|+++.+|..+.++++|+.|+|++|++.+..|..+.
T Consensus 259 ~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 55677777777777777777777777777777777776665554333
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.6e-23 Score=227.96 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=194.7
Q ss_pred CcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccC
Q 037332 723 GNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS 802 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 802 (1007)
..++.|++++|.+..+|..+..+++|++|++++|... .+|..++.+++|++|++++|... .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4678899999999999999999999999999998766 88888999999999999998766 788889999999999999
Q ss_pred cccc-cccchhhh---------cCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEec
Q 037332 803 WTKI-KELKSSID---------HLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFA 872 (1007)
Q Consensus 803 ~n~l-~~l~~~~~---------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~ 872 (1007)
+|.+ ..+|..+. .+++|++|++++|... .+|..++.+++|+.|++++|.++.+|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 8654 46776655 4999999999998766 78889999999999999999999999999999999999999
Q ss_pred CCC-CCcCCcccCCCCCCCEEeccCCCCC-CCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCCCCEEeeecCCC
Q 037332 873 GCR-NLVLPTLLSGLCSLTELDLKDCGIR-EIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 873 ~~~-~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
+|. ...+|..+.++++|+.|+|++|++. .+|..+..+++|++|+|++|++. .+|..+.++++|+.+++..+..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 988 5667888999999999999998765 58999999999999999998766 8999999999999999987743
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.7e-22 Score=238.15 Aligned_cols=230 Identities=18% Similarity=0.158 Sum_probs=172.8
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
|++|++++|.++.+|. .+++|++|++++|... .+|. .+++|+.|++++|... .+|.. +++|++|++++|
T Consensus 83 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 83 LRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred CCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCC
Confidence 3344444444444554 4455666666655332 2333 4566777777766433 34443 478999999999
Q ss_pred cccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccC
Q 037332 805 KIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLS 884 (1007)
Q Consensus 805 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 884 (1007)
.++.+|. .+++|+.|++++|.... +| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+..+|.
T Consensus 152 ~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~--- 218 (622)
T 3g06_A 152 QLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA--- 218 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---
T ss_pred cCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---
Confidence 9988775 45789999999987654 55 5578999999999999998863 5899999999999888886
Q ss_pred CCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCcccccccccccc
Q 037332 885 GLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARNC 964 (1007)
Q Consensus 885 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c 964 (1007)
.+++|+.|+|++|.++.+| ..+++|+.|+|++|+++.+|. .+++|+.|+|++|++. .+|..+..+..|...++
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 3589999999999999998 567899999999999999986 6789999999999776 78877767777766677
Q ss_pred cccCCCCCcchhccccccccc
Q 037332 965 KQLRSLPELPSCLKGFDALEL 985 (1007)
Q Consensus 965 ~~l~~~~~~p~~l~~L~~L~~ 985 (1007)
.++...+..|..+..+.....
T Consensus 292 ~~N~l~~~~~~~l~~L~~~~~ 312 (622)
T 3g06_A 292 EGNPLSERTLQALREITSAPG 312 (622)
T ss_dssp CSCCCCHHHHHHHHHHHHSTT
T ss_pred cCCCCCCcCHHHHHhcccccc
Confidence 777666777777776665443
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=1.1e-24 Score=261.40 Aligned_cols=361 Identities=15% Similarity=0.127 Sum_probs=238.0
Q ss_pred CCceEEEecCCCCCCCCC-CC-C-c-cccceeeCCCCC-cc--ccccccccccccceeeccCCcCCCCC----CC-CCCC
Q 037332 587 EELRYFHWHGYPLKTLPF-NF-D-P-ENLIELNLPHSK-IK--QIWEGKKEAFKLKSIDLRYSQYLTRI----PE-PSEI 654 (1007)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~-~~-~-l-~~L~~L~L~~~~-i~--~l~~~~~~l~~L~~L~L~~~~~~~~~----~~-~~~l 654 (1007)
++|++|+++++.+..... .+ . + .+|++|+|+++. +. .++.....+++|++|+|++|.+.... +. ...+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 356777777664432111 11 1 2 337777776664 11 22222345667777777777543321 11 1356
Q ss_pred CCCcEEeccccccc----CCCCcccccCCCccEEEecCCCCCcccCCCCC-CCCCcEEeccccccCCc------cCCccC
Q 037332 655 PNLEKINLWNCTNL----AYIPCNIQNFINLGVLCFRGCKSLKCFPHDIH-FTSPIKIDISYCVNLTE------FPKISG 723 (1007)
Q Consensus 655 ~~L~~L~L~~~~~~----~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~------~~~~~~ 723 (1007)
++|++|++++|... ..++..+..+++|++|++++|... .++..+. +++|+.|+++.+..... ......
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 67777777666543 223344456677777777765432 2332222 56666666664322211 112335
Q ss_pred cceEEEeeCCccccccccccccccccEEecCCcccccc-chhhhhccCccceEEecCCCCCcccccccccCCCCceeccC
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKS-LSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS 802 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 802 (1007)
+|+.|+++++....+|..+..+++|++|++++|..... ++..+..+++|+.|+++++.....++.....+++|+.|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 78889998887788898899999999999999884333 23446789999999998543334455555778999999999
Q ss_pred -----------ccccc--ccchhhhcCCCCCEEeccCCCCCccCCcccCC-CCCCCEEEec----cccCccc------Ch
Q 037332 803 -----------WTKIK--ELKSSIDHLERLRNLKLRECSKLVSLPENLGS-LKSLVYIEAE----RSAISQV------PA 858 (1007)
Q Consensus 803 -----------~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~~~l~~~------~~ 858 (1007)
.+.++ .++.....+++|++|+++.+......+..+.. +++|+.|+++ .|.++.. +.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 35565 24444567999999999766665554555544 8899999996 5667754 33
Q ss_pred hhhcCCCCCEEEecCCCC--C-c-CCcccCCCCCCCEEeccCCCCCC--CchhhCCCCCcCEEEccCCCCc--cchhhhc
Q 037332 859 SIAHLNEVKSLSFAGCRN--L-V-LPTLLSGLCSLTELDLKDCGIRE--IPQDIGSVFALEKIDLSGNNFE--TLPASMK 930 (1007)
Q Consensus 859 ~~~~l~~L~~L~l~~~~~--~-~-~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~ 930 (1007)
.+..+++|+.|++++|.. . . +......+++|+.|+|++|+++. ++..+..+++|++|+|++|.++ .++..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 367799999999987652 1 1 11222457899999999999985 5666788999999999999987 3555567
Q ss_pred CCCCCCEEeeecCCCCCc
Q 037332 931 QLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 931 ~l~~L~~L~L~~n~~l~~ 948 (1007)
.+++|++|+|++|++...
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 899999999999996654
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.8e-25 Score=257.87 Aligned_cols=204 Identities=20% Similarity=0.126 Sum_probs=128.8
Q ss_pred cccccEEecCCcccccc----chhhhhccCccceEEecCCCCCccc-----ccccccCCCCceeccCcccccc-----cc
Q 037332 745 LTTLVKLDLSYCTRLKS----LSTSICKLRSLYWLYLNNCSKLESF-----PEILEKMERLSYMDLSWTKIKE-----LK 810 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~-----l~ 810 (1007)
.++|++|++++|..... ++..+..+++|++|++++|...... +..+..+++|+.|++++|.++. ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 44667777776654442 4555666677777777766543221 1122346677777777777664 56
Q ss_pred hhhhcCCCCCEEeccCCCCCccCCccc-----CCCCCCCEEEeccccCcc-----cChhhhcCCCCCEEEecCCCCCcC-
Q 037332 811 SSIDHLERLRNLKLRECSKLVSLPENL-----GSLKSLVYIEAERSAISQ-----VPASIAHLNEVKSLSFAGCRNLVL- 879 (1007)
Q Consensus 811 ~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~- 879 (1007)
..+..+++|++|++++|......+..+ ...++|+.|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 666667777777777776533222111 223577777777777763 355566778888888888875432
Q ss_pred C----cccC-CCCCCCEEeccCCCCC-----CCchhhCCCCCcCEEEccCCCCccc-----hhhh-cCCCCCCEEeeecC
Q 037332 880 P----TLLS-GLCSLTELDLKDCGIR-----EIPQDIGSVFALEKIDLSGNNFETL-----PASM-KQLSRLRYLYLINC 943 (1007)
Q Consensus 880 ~----~~~~-~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~l-----p~~~-~~l~~L~~L~L~~n 943 (1007)
+ ..+. ..++|+.|+|++|.++ .+|..+..+++|++|++++|+++.. ...+ ....+|+.|.+.++
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 1 1122 2678899999999888 5777888888999999999988732 1222 23457888888777
Q ss_pred CCCCc
Q 037332 944 YMLQT 948 (1007)
Q Consensus 944 ~~l~~ 948 (1007)
.....
T Consensus 438 ~~~~~ 442 (461)
T 1z7x_W 438 YWSEE 442 (461)
T ss_dssp CCCHH
T ss_pred ccCHH
Confidence 65443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.3e-22 Score=219.18 Aligned_cols=234 Identities=22% Similarity=0.298 Sum_probs=194.6
Q ss_pred CCccCC-ccCcceEEEeeCCcccccccc-ccccccccEEecCCcccccc--chhhhhccCccceEEecCCCCCccccccc
Q 037332 715 LTEFPK-ISGNIIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKS--LSTSICKLRSLYWLYLNNCSKLESFPEIL 790 (1007)
Q Consensus 715 l~~~~~-~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l 790 (1007)
++.+|. ...+++.|++++|.+..+|.. +..+++|++|++++|..... .+..+..+++|++|++++|... .+|..+
T Consensus 19 l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~ 97 (306)
T 2z66_A 19 LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97 (306)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE
T ss_pred cccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc
Confidence 444443 335788999999999999876 68999999999999865532 3567778999999999997654 567778
Q ss_pred ccCCCCceeccCcccccccch--hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc--cChhhhcCCCC
Q 037332 791 EKMERLSYMDLSWTKIKELKS--SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ--VPASIAHLNEV 866 (1007)
Q Consensus 791 ~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L 866 (1007)
..+++|++|++++|.+..++. .+..+++|++|++++|...+..+..+..+++|+.|++++|.+.. +|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 899999999999999998764 78899999999999998888888889999999999999999885 68888899999
Q ss_pred CEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCcc-chhhhcCCC-CCCEEeeec
Q 037332 867 KSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFET-LPASMKQLS-RLRYLYLIN 942 (1007)
Q Consensus 867 ~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~-~L~~L~L~~ 942 (1007)
++|++++|.+..+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+++. .|..+..++ +|++|+|++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 9999999987766 5678889999999999999988754 67889999999999999985 455677774 899999999
Q ss_pred CCCCCcC
Q 037332 943 CYMLQTL 949 (1007)
Q Consensus 943 n~~l~~~ 949 (1007)
|++....
T Consensus 258 N~~~~~c 264 (306)
T 2z66_A 258 NDFACTC 264 (306)
T ss_dssp CCEECSG
T ss_pred CCeeccc
Confidence 9887643
No 62
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.89 E-value=5.7e-25 Score=205.35 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=95.6
Q ss_pred CCCCccccEEEcCccccccCchhHHHHHHHHh--CCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchhh
Q 037332 13 LNSQYKFDVFLSFRGEDTRYNFTSHLFAALSR--KKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWC 89 (1007)
Q Consensus 13 ~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c 89 (1007)
....++|||||||+++|+ .||.+|+++|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 456789999999999997 689999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEEeeCCCc----cccccCchHHHHHHHHHHhccChHHHHHHHHHH
Q 037332 90 LDELVKILECKNMNDQVVVPVFYHVDPSD----VRKQTGSFGDAFSKLEQQFTEMPEKVQLWRAVL 151 (1007)
Q Consensus 90 ~~el~~~~~~~~~~~~~v~pvf~~v~~~~----vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1007)
..|+..|+.+...+..+||||||+|++++ +|.....- +..++.++++..+.|.+|++++
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 99999999987444457889999998655 44433211 1123344555667888888764
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=224.98 Aligned_cols=161 Identities=11% Similarity=0.187 Sum_probs=112.6
Q ss_pred cccCCCCceeccCcc-ccccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhh-hcCCCC
Q 037332 790 LEKMERLSYMDLSWT-KIKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASI-AHLNEV 866 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L 866 (1007)
+..+++|++|++++| .+..+ +..+..+++|++|++++|...+..|..+..+++|+.|++++|.+..+|..+ ..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 444445555555544 23433 234555666666666666655555666777777777777777777666543 346778
Q ss_pred CEEEecCCCCCcCCc----ccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCccchhhh-cCCCCCC
Q 037332 867 KSLSFAGCRNLVLPT----LLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFETLPASM-KQLSRLR 936 (1007)
Q Consensus 867 ~~L~l~~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~ 936 (1007)
++|++++|.....+. .......++.++|+++.++. +|..+..+++|++|++++|+++.+|..+ ..+++|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 888888777554432 12345678889999888874 7888899999999999999999999874 8999999
Q ss_pred EEeeecCCCCCcCC
Q 037332 937 YLYLINCYMLQTLP 950 (1007)
Q Consensus 937 ~L~L~~n~~l~~~p 950 (1007)
+|+|++|++.+..|
T Consensus 305 ~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 305 KIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEeeCCCccCcCC
Confidence 99999998877655
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=222.89 Aligned_cols=268 Identities=18% Similarity=0.191 Sum_probs=180.2
Q ss_pred EEEecCCCCCCCCCCCCccccceeeCCCCCcccccc-ccccccccceeeccCCcCCCCCC-CCCCCCCCcEEeccccccc
Q 037332 591 YFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWE-GKKEAFKLKSIDLRYSQYLTRIP-EPSEIPNLEKINLWNCTNL 668 (1007)
Q Consensus 591 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~ 668 (1007)
..+++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+....| .+.++++|++|++++|...
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 36677788888887553 478888888888887765 57778888888888887766555 3677788888888777544
Q ss_pred CCCCcccccCCCccEEEecCCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccccccc--cccccc
Q 037332 669 AYIPCNIQNFINLGVLCFRGCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPS--SIESLT 746 (1007)
Q Consensus 669 ~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~--~~~~l~ 746 (1007)
...+..++.+++|++|++++| .+..+|. .+..++
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n--------------------------------------------~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN--------------------------------------------PYKTLGETSLFSHLT 149 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC--------------------------------------------CCSSSCSSCSCTTCT
T ss_pred cCCHhHhCCCccCCEEECCCC--------------------------------------------CCcccCchhhhccCC
Confidence 322233666666666666554 3444544 466777
Q ss_pred cccEEecCCccccccc-hhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhh-hcCCCCCEEec
Q 037332 747 TLVKLDLSYCTRLKSL-STSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSI-DHLERLRNLKL 824 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~L~l 824 (1007)
+|++|++++|.....+ +..+.++++|++|++++|...+..|..+..+++|++|++++|.+..++..+ ..+++|+.|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 7788887777544443 456777888888888887777666777778888888888888877766543 45777888888
Q ss_pred cCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCC-----cCCcccCCCCCCCEEeccCCCC
Q 037332 825 RECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNL-----VLPTLLSGLCSLTELDLKDCGI 899 (1007)
Q Consensus 825 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~L~~n~l 899 (1007)
++|...+..+..+.. ......++.++++++... .+|..+..+++|+.|+|++|++
T Consensus 230 ~~n~l~~~~~~~l~~--------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 230 RDTDLDTFHFSELST--------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp ESCBCTTCCCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred CCCcccccccccccc--------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 777655433322211 112334444444444422 2455566777888888888888
Q ss_pred CCCchhh-CCCCCcCEEEccCCCCc
Q 037332 900 REIPQDI-GSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 900 ~~lp~~l-~~l~~L~~L~L~~n~l~ 923 (1007)
+.+|..+ ..+++|++|+|++|.+.
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 8887764 77888888888888776
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=3.2e-22 Score=218.02 Aligned_cols=238 Identities=21% Similarity=0.276 Sum_probs=202.5
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCc--ccccccccCCCCceeccCc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLE--SFPEILEKMERLSYMDLSW 803 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~ 803 (1007)
+.++.+++.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467888999999998654 689999999987654333457899999999999987653 2356677899999999999
Q ss_pred ccccccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCCCc--C
Q 037332 804 TKIKELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLV--L 879 (1007)
Q Consensus 804 n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~--~ 879 (1007)
|.+..+|..+..+++|++|++++|......+ ..+..+++|+.|++++|.+... +..+..+++|++|++++|.... .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 9999999999999999999999988766544 5789999999999999999855 5567889999999999999764 7
Q ss_pred CcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCCCCc----
Q 037332 880 PTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLPELP---- 953 (1007)
Q Consensus 880 ~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p~~~---- 953 (1007)
|..+..+++|+.|+|++|.++.+ |..+..+++|++|++++|.++.++. .+..+++|+.|+|++|++.+..|..+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 88899999999999999999987 6788999999999999999997764 68899999999999999988777533
Q ss_pred cccccccccccc
Q 037332 954 LRLKLLEARNCK 965 (1007)
Q Consensus 954 ~~L~~L~~~~c~ 965 (1007)
++|+.|++.+++
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 467777776654
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=8.3e-22 Score=226.31 Aligned_cols=232 Identities=23% Similarity=0.292 Sum_probs=203.3
Q ss_pred CCccCC-ccCcceEEEeeCCcccccc-ccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccccccc
Q 037332 715 LTEFPK-ISGNIIVLDLRDSAIEEVP-SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEK 792 (1007)
Q Consensus 715 l~~~~~-~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 792 (1007)
++.+|. ...+++.|+|++|.+..++ ..+.++++|++|+|++|......+..|.++++|++|++++|......+..+..
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 444443 3357889999999999886 56999999999999999877777788999999999999998777666667999
Q ss_pred CCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCc-ccCCCCCCCEEEeccccCcccChhhhcCCCCCEEE
Q 037332 793 MERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPE-NLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLS 870 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 870 (1007)
+++|+.|++++|.+..++. .+..+++|++|++++|+..+.++. .+.++++|+.|++++|.++.+|. +..+++|+.|+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 213 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELD 213 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEE
Confidence 9999999999999998875 788999999999999887776665 68999999999999999999985 78899999999
Q ss_pred ecCCCCCcC-CcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCC
Q 037332 871 FAGCRNLVL-PTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 871 l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~ 947 (1007)
+++|.+..+ |..+.++++|+.|+|++|+++.+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.-
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999997766 66889999999999999999986 55688999999999999999988754 6889999999999998653
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=7.6e-22 Score=212.56 Aligned_cols=223 Identities=22% Similarity=0.288 Sum_probs=184.3
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
+.++.+++.+..+|..+ .++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 46777778888888654 4688888888877666555678888888888888887776667788888889999998886
Q ss_pred -cccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEecCCCCCcCCc-
Q 037332 806 -IKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSFAGCRNLVLPT- 881 (1007)
Q Consensus 806 -l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~- 881 (1007)
+..+ +..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7776 56788889999999999888777778888899999999999998877654 7788999999999998777765
Q ss_pred ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCC
Q 037332 882 LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 882 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.+.++++|+.|+|++|.++.+ |..+..+++|+.|++++|+++.+|. .+..+++|+.|++++|++....+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 578889999999999999876 7788889999999999999987764 48889999999999998876544
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=8.6e-22 Score=227.03 Aligned_cols=232 Identities=23% Similarity=0.269 Sum_probs=203.5
Q ss_pred CCccCC-ccCcceEEEeeCCccccc-cccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccccccc
Q 037332 715 LTEFPK-ISGNIIVLDLRDSAIEEV-PSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEK 792 (1007)
Q Consensus 715 l~~~~~-~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 792 (1007)
++.+|. ...+++.|+|++|.+..+ |..+.++++|++|+|++|......+..|.++++|++|++++|......+..+..
T Consensus 66 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 66 LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred cCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 444443 345789999999999987 456999999999999999887777788999999999999999877666677899
Q ss_pred CCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCc-ccCCCCCCCEEEeccccCcccChhhhcCCCCCEEE
Q 037332 793 MERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPE-NLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLS 870 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 870 (1007)
+++|++|++++|.+..++. .+..+++|+.|++++|+..+.++. .+..+++|+.|++++|.++.+|. +..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEE
Confidence 9999999999999998875 688999999999999888877665 68999999999999999999874 78899999999
Q ss_pred ecCCCCCcC-CcccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCC
Q 037332 871 FAGCRNLVL-PTLLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 871 l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~ 947 (1007)
+++|.+..+ |..+.++++|+.|+|++|+++.+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.-
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 999997766 66899999999999999999986 66789999999999999999988754 6889999999999998654
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.4e-21 Score=219.18 Aligned_cols=238 Identities=18% Similarity=0.186 Sum_probs=206.0
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
...++.++..+..+|..+. ++|+.|+|++|......+..|.++++|+.|++++|......+..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3467888899999998665 68999999999888777888999999999999999888877889999999999999999
Q ss_pred cccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEecc-ccCcccCh-hhhcCCCCCEEEecCCCCCcCCc
Q 037332 805 KIKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAER-SAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT 881 (1007)
Q Consensus 805 ~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 881 (1007)
.++.++.. +..+++|++|++++|......+..+..+++|+.|++++ +.+..++. .+..+++|++|++++|.+..+|.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 99988764 88999999999999988776667899999999999998 56667765 57889999999999999888875
Q ss_pred ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEeeecCCCCCcCCCCc---ccc
Q 037332 882 LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYLINCYMLQTLPELP---LRL 956 (1007)
Q Consensus 882 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~l~~~p~~~---~~L 956 (1007)
+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++.+..+..+ ++|
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred -ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 78899999999999999986 77899999999999999999966 5678999999999999998876555544 556
Q ss_pred ccccccccc
Q 037332 957 KLLEARNCK 965 (1007)
Q Consensus 957 ~~L~~~~c~ 965 (1007)
+.|++.+++
T Consensus 293 ~~L~L~~Np 301 (452)
T 3zyi_A 293 VELHLHHNP 301 (452)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 666665543
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=6.8e-21 Score=218.69 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=206.2
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
...++.++..+..+|..+. ++++.|+|++|......+..|.++++|++|++++|......+..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3467888899999998765 78999999999877777788999999999999999887777788999999999999999
Q ss_pred cccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccc-cCcccCh-hhhcCCCCCEEEecCCCCCcCCc
Q 037332 805 KIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERS-AISQVPA-SIAHLNEVKSLSFAGCRNLVLPT 881 (1007)
Q Consensus 805 ~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 881 (1007)
.++.++. .+..+++|++|++++|......+..+..+++|+.|++++| .+..++. .+..+++|++|++++|.+..+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 9998876 6899999999999999987777778999999999999994 5666665 57889999999999999988886
Q ss_pred ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccch-hhhcCCCCCCEEeeecCCCCCcCCCCc---ccc
Q 037332 882 LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLP-ASMKQLSRLRYLYLINCYMLQTLPELP---LRL 956 (1007)
Q Consensus 882 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~~l~~~p~~~---~~L 956 (1007)
+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++ ..+..+++|+.|+|++|++....+..+ ++|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 78899999999999999987 678899999999999999999764 568999999999999998876555544 456
Q ss_pred ccccccccc
Q 037332 957 KLLEARNCK 965 (1007)
Q Consensus 957 ~~L~~~~c~ 965 (1007)
+.|++.+++
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 666665443
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=4.1e-21 Score=206.81 Aligned_cols=237 Identities=21% Similarity=0.219 Sum_probs=194.4
Q ss_pred CCccCC-ccCcceEEEeeCCccccccc-cccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcc-cccccc
Q 037332 715 LTEFPK-ISGNIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLES-FPEILE 791 (1007)
Q Consensus 715 l~~~~~-~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~ 791 (1007)
++.+|. ...+++.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++|...+. .+..+.
T Consensus 23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 444443 44588999999999998885 589999999999999987776688899999999999999974444 477899
Q ss_pred cCCCCceeccCccccccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh-hhhcCCCCCEE
Q 037332 792 KMERLSYMDLSWTKIKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-SIAHLNEVKSL 869 (1007)
Q Consensus 792 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L 869 (1007)
.+++|++|++++|.+..+ +..+..+++|++|++++|......+..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 999999999999999977 5678899999999999998877777779999999999999999998876 48889999999
Q ss_pred EecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC
Q 037332 870 SFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 870 ~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
++++|.+..+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|.+..-.........|+.+..+.+....
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc
Confidence 9999997665 7788999999999999999999875 5899999999999999887221111111224444466666655
Q ss_pred cCCC
Q 037332 948 TLPE 951 (1007)
Q Consensus 948 ~~p~ 951 (1007)
..|+
T Consensus 263 ~~p~ 266 (285)
T 1ozn_A 263 SLPQ 266 (285)
T ss_dssp EESG
T ss_pred CCch
Confidence 5664
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=9.6e-23 Score=222.92 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCccc-CCCCCCCEEEeccccCcccChhhhcCCCCCEEEe
Q 037332 794 ERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENL-GSLKSLVYIEAERSAISQVPASIAHLNEVKSLSF 871 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l 871 (1007)
++|+.|++++|.++.++. .+..+++|++|++++|......+..+ ..+++|+.|++++|.++.++.. ..+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEEC
Confidence 344444444444443322 34444445555555444443333333 2445555555555555544322 23556666666
Q ss_pred cCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc--cchhhhcCCCCCCEEeeecCC
Q 037332 872 AGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE--TLPASMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 872 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~ 944 (1007)
++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 6666555555556666677777777777666666666777777777777766 556666667777777776554
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=9.4e-23 Score=244.63 Aligned_cols=385 Identities=13% Similarity=0.093 Sum_probs=268.9
Q ss_pred hccCccccEEEEecccCCCcceecCCCCcc-CCCCceEEEecCCCCC---CCCCCC-CccccceeeCCCCCccc-----c
Q 037332 555 FINMSNLRLLKFYTCEYMSSKVHLDQGLDY-LPEELRYFHWHGYPLK---TLPFNF-DPENLIELNLPHSKIKQ-----I 624 (1007)
Q Consensus 555 f~~~~~Lr~L~l~~~~~~~~~~~l~~~l~~-~~~~L~~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~~~i~~-----l 624 (1007)
+.++++|+.|++++|.+...... .+.. .+.+|++|+++++... .++... .+++|++|+|++|.+.. +
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHH---HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHH---HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 44789999999998864222111 1111 3345999999987621 111112 67899999999998753 3
Q ss_pred ccccccccccceeeccCCcCCCC----CCC-CCCCCCCcEEecccccccCCCCcccccCCCccEEEecCCCCCcc---cC
Q 037332 625 WEGKKEAFKLKSIDLRYSQYLTR----IPE-PSEIPNLEKINLWNCTNLAYIPCNIQNFINLGVLCFRGCKSLKC---FP 696 (1007)
Q Consensus 625 ~~~~~~l~~L~~L~L~~~~~~~~----~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~---~~ 696 (1007)
+.....+++|++|++++|.+... ++. +..+++|++|++++|.. ..++..+..+++|++|+++++..... .+
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 33446789999999999987522 222 35789999999999764 44778889999999999986433211 11
Q ss_pred CC-CCCCCCcEEecccccc--CCccCCccCcceEEEeeCCcccc--ccccccccccccEEecCCccccccchhhhhccCc
Q 037332 697 HD-IHFTSPIKIDISYCVN--LTEFPKISGNIIVLDLRDSAIEE--VPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRS 771 (1007)
Q Consensus 697 ~~-~~~~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 771 (1007)
.. ..+++|+.+++.++.. +..+.....+|++|++++|.+.. ++..+..+++|++|+++++.....++..+..+++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 12 2367888888877421 22233345689999999998653 3344688999999999965444455555678999
Q ss_pred cceEEecC----------CCCCcc--cccccccCCCCceeccCcccccc-cchhhh-cCCCCCEEeccC---CCCCccC-
Q 037332 772 LYWLYLNN----------CSKLES--FPEILEKMERLSYMDLSWTKIKE-LKSSID-HLERLRNLKLRE---CSKLVSL- 833 (1007)
Q Consensus 772 L~~L~l~~----------~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~-l~~~~~-~l~~L~~L~l~~---~~~~~~~- 833 (1007)
|++|++++ |+..+. ++.....+++|++|+++.+.++. .+..+. .+++|+.|++++ |+..+..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999994 555442 33345668999999998888873 334454 499999999984 3444432
Q ss_pred -----CcccCCCCCCCEEEecccc--Cc-ccChhh-hcCCCCCEEEecCCCCCc--CCcccCCCCCCCEEeccCCCCCC-
Q 037332 834 -----PENLGSLKSLVYIEAERSA--IS-QVPASI-AHLNEVKSLSFAGCRNLV--LPTLLSGLCSLTELDLKDCGIRE- 901 (1007)
Q Consensus 834 -----~~~l~~l~~L~~L~l~~~~--l~-~~~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~- 901 (1007)
+..+.++++|+.|+++.|. ++ ..+..+ ..+++|++|++++|.... ++..+.++++|++|+|++|.++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 2336779999999997643 44 222233 458999999999998643 45566889999999999999874
Q ss_pred -CchhhCCCCCcCEEEccCCCCccc--hhhhcCCCCCCEEeeecC
Q 037332 902 -IPQDIGSVFALEKIDLSGNNFETL--PASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 902 -lp~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~L~~n 943 (1007)
++..+..+++|+.|+|++|+++.. ..-...+|.|....+..+
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 455567899999999999998732 222356788877777654
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.4e-22 Score=221.16 Aligned_cols=219 Identities=18% Similarity=0.221 Sum_probs=152.1
Q ss_pred ceEEEeeCCcccc--cccccc-------ccccccEEecCCccccccchhhh--hccCccceEEecCCCCCcccccccccC
Q 037332 725 IIVLDLRDSAIEE--VPSSIE-------SLTTLVKLDLSYCTRLKSLSTSI--CKLRSLYWLYLNNCSKLESFPEILEKM 793 (1007)
Q Consensus 725 L~~L~l~~~~i~~--lp~~~~-------~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l 793 (1007)
++.|++++|.+.. +|..+. .+++|++|++++|.....+|..+ ..+++|++|++++|...+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5556666666643 444443 57777777777777666666655 6777778888777766555 6666655
Q ss_pred -----CCCceeccCcccccccc-hhhhcCCCCCEEeccCCCCCcc--CCccc--CCCCCCCEEEeccccCcccC---h-h
Q 037332 794 -----ERLSYMDLSWTKIKELK-SSIDHLERLRNLKLRECSKLVS--LPENL--GSLKSLVYIEAERSAISQVP---A-S 859 (1007)
Q Consensus 794 -----~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~l~~~~---~-~ 859 (1007)
++|++|++++|.+..++ ..+..+++|++|++++|...+. ++..+ ..+++|+.|++++|.++.++ . .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 77788888877777665 5677777888888877776543 23333 67778888888888777443 2 2
Q ss_pred hhcCCCCCEEEecCCCCCcCC--cccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCE
Q 037332 860 IAHLNEVKSLSFAGCRNLVLP--TLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRY 937 (1007)
Q Consensus 860 ~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 937 (1007)
+..+++|++|++++|.+...+ ..+..+++|+.|+|++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 346678888888887765543 345567788888888888887777665 778888888888877765 777788888
Q ss_pred EeeecCCCCC
Q 037332 938 LYLINCYMLQ 947 (1007)
Q Consensus 938 L~L~~n~~l~ 947 (1007)
|+|++|++.+
T Consensus 301 L~L~~N~l~~ 310 (312)
T 1wwl_A 301 LSLKGNPFLD 310 (312)
T ss_dssp EECTTCTTTC
T ss_pred EeccCCCCCC
Confidence 8888887654
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=8.8e-22 Score=215.26 Aligned_cols=238 Identities=18% Similarity=0.185 Sum_probs=198.3
Q ss_pred ccCcceEEEeeCCcccccc-ccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCcee
Q 037332 721 ISGNIIVLDLRDSAIEEVP-SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYM 799 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 799 (1007)
...+|++|++++|.+..++ ..+..+++|++|++++|......+ +..+++|++|++++|...+ +...++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEE
Confidence 3457889999999999886 568999999999999987765554 8899999999999986543 2345899999
Q ss_pred ccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhh-hcCCCCCEEEecCCCCC
Q 037332 800 DLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASI-AHLNEVKSLSFAGCRNL 877 (1007)
Q Consensus 800 ~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~-~~l~~L~~L~l~~~~~~ 877 (1007)
++++|.+..++.. .+++|++|++++|...+..+..+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|.+.
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999999977643 4789999999999988877778899999999999999999764 444 47899999999999988
Q ss_pred cCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC-CcCCCCc---
Q 037332 878 VLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML-QTLPELP--- 953 (1007)
Q Consensus 878 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l-~~~p~~~--- 953 (1007)
.++.. ..+++|+.|+|++|.++.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++. +.+|..+
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 77653 358999999999999999988899999999999999999999999999999999999999988 5555443
Q ss_pred ccccccccccccccC
Q 037332 954 LRLKLLEARNCKQLR 968 (1007)
Q Consensus 954 ~~L~~L~~~~c~~l~ 968 (1007)
+.|+.|.+.++..++
T Consensus 262 ~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 262 QRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccceEEECCCchhcc
Confidence 455555555554443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-21 Score=225.52 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=195.0
Q ss_pred ccCcceEEEeeCCcccccc-ccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCcee
Q 037332 721 ISGNIIVLDLRDSAIEEVP-SSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYM 799 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 799 (1007)
..++|+.|+|++|.+..++ ..+..+++|++|+|++|......| +..+++|++|++++|...+ +| ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEE
Confidence 4457899999999999876 579999999999999988766555 8899999999999986543 22 34899999
Q ss_pred ccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-Chhhh-cCCCCCEEEecCCCCC
Q 037332 800 DLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASIA-HLNEVKSLSFAGCRNL 877 (1007)
Q Consensus 800 ~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~-~l~~L~~L~l~~~~~~ 877 (1007)
++++|.+..++.. .+++|+.|++++|...+..|..++.+++|+.|++++|.++.+ |..+. .+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999977653 578999999999999888888999999999999999999964 55554 7899999999999988
Q ss_pred cCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC-CcCCCCcccc
Q 037332 878 VLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML-QTLPELPLRL 956 (1007)
Q Consensus 878 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l-~~~p~~~~~L 956 (1007)
.+|. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 7765 3468999999999999999988899999999999999999999999999999999999999987 4555444444
Q ss_pred ccc
Q 037332 957 KLL 959 (1007)
Q Consensus 957 ~~L 959 (1007)
..|
T Consensus 262 ~~L 264 (487)
T 3oja_A 262 QRV 264 (487)
T ss_dssp HHH
T ss_pred CCC
Confidence 333
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=5.2e-23 Score=247.04 Aligned_cols=393 Identities=13% Similarity=0.118 Sum_probs=210.3
Q ss_pred hhhccCccccEEEEecccCCCcceecCCC-----------CccCCCCceEEEecCCCCCCCC-CCC--CccccceeeCCC
Q 037332 553 RAFINMSNLRLLKFYTCEYMSSKVHLDQG-----------LDYLPEELRYFHWHGYPLKTLP-FNF--DPENLIELNLPH 618 (1007)
Q Consensus 553 ~~f~~~~~Lr~L~l~~~~~~~~~~~l~~~-----------l~~~~~~L~~L~l~~~~l~~lp-~~~--~l~~L~~L~L~~ 618 (1007)
..+.++++|+.|.+.+|.........+.. +....++|+.|+++++.+.... ..+ .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 45677888999999887531111100100 0111247888888887654321 111 467888888888
Q ss_pred C-Cccc--cccccccccccceeeccCCcCCCCCC----CC-CCCCCCcEEeccccc-cc--CCCCcccccCCCccEEEec
Q 037332 619 S-KIKQ--IWEGKKEAFKLKSIDLRYSQYLTRIP----EP-SEIPNLEKINLWNCT-NL--AYIPCNIQNFINLGVLCFR 687 (1007)
Q Consensus 619 ~-~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~----~~-~~l~~L~~L~L~~~~-~~--~~l~~~~~~l~~L~~L~l~ 687 (1007)
| .+.. ++.....+++|++|++++|.+....+ .+ ..+++|++|++++|. .+ ..++..+..+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 7 5543 44445578888899888887543222 22 467788888888875 11 1112223456888888888
Q ss_pred CCCCCcccCCCCC-CCCCcEEeccccccC------CccC---CccCcceEE-EeeCCccccccccccccccccEEecCCc
Q 037332 688 GCKSLKCFPHDIH-FTSPIKIDISYCVNL------TEFP---KISGNIIVL-DLRDSAIEEVPSSIESLTTLVKLDLSYC 756 (1007)
Q Consensus 688 ~~~~l~~~~~~~~-~~~L~~L~l~~~~~l------~~~~---~~~~~L~~L-~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 756 (1007)
+|..+..++..+. +++|+.|+++.+..- ..++ ....+|+.| .+.+.....++..+..+++|++|++++|
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 8865555444332 667777776655320 0000 122344455 3333334445555556667777777766
Q ss_pred ccccc-chhhhhccCccceEEecCCCCCcccccccccCCCCceeccC---------cccccc--cchhhhcCCCCCEEec
Q 037332 757 TRLKS-LSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS---------WTKIKE--LKSSIDHLERLRNLKL 824 (1007)
Q Consensus 757 ~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~---------~n~l~~--l~~~~~~l~~L~~L~l 824 (1007)
..... ++..+..+++|+.|++++|.....++.....+++|+.|++. .+.++. +......+++|++|.+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 63222 22224466667777776651111222223346666666662 233331 1122234666776655
Q ss_pred cCCCCCccCCcccC-CCCCCCEEEec--c----ccCcccC------hhhhcCCCCCEEEecCCCCCcCCcccC-CCCCCC
Q 037332 825 RECSKLVSLPENLG-SLKSLVYIEAE--R----SAISQVP------ASIAHLNEVKSLSFAGCRNLVLPTLLS-GLCSLT 890 (1007)
Q Consensus 825 ~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~l~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~ 890 (1007)
..+......+..+. .+++|+.|+++ + +.++..| ..+..+++|+.|+++++-....+..+. .+++|+
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~ 459 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKME 459 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCC
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhcc
Confidence 54444332222222 45666777666 2 3444222 124556677777775521111111122 256677
Q ss_pred EEeccCCCCCCC-chhh-CCCCCcCEEEccCCCCcc--chhhhcCCCCCCEEeeecCCC
Q 037332 891 ELDLKDCGIREI-PQDI-GSVFALEKIDLSGNNFET--LPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 891 ~L~L~~n~l~~l-p~~l-~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
.|+|++|.++.. +..+ ..+++|++|+|++|.++. +......+++|+.|++++|+.
T Consensus 460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 777777766531 2222 456677777777776642 222334566777777777765
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.1e-21 Score=214.02 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=191.0
Q ss_pred cceEEEeeCCccccccccccccccccEEecCCcccc-ccchhhhh-------ccCccceEEecCCCCCccccccc--ccC
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRL-KSLSTSIC-------KLRSLYWLYLNNCSKLESFPEIL--EKM 793 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~-~~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l 793 (1007)
+|+.|++++|.+ .+|..+... |+.|++++|... ..+|..+. ++++|++|++++|...+.+|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 566778888888 888877655 999999998763 34565554 79999999999999888888876 899
Q ss_pred CCCceeccCcccccccchhhhcC-----CCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc---cChhh--hcC
Q 037332 794 ERLSYMDLSWTKIKELKSSIDHL-----ERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ---VPASI--AHL 863 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---~~~~~--~~l 863 (1007)
++|++|++++|.++.+|..+..+ ++|++|++++|...+..|..++.+++|+.|++++|.+.. ++..+ ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 99999999999999888878777 999999999999888888899999999999999998763 34444 788
Q ss_pred CCCCEEEecCCCCCcCCc----ccCCCCCCCEEeccCCCCCCCc--hhhCCCCCcCEEEccCCCCccchhhhcCCCCCCE
Q 037332 864 NEVKSLSFAGCRNLVLPT----LLSGLCSLTELDLKDCGIREIP--QDIGSVFALEKIDLSGNNFETLPASMKQLSRLRY 937 (1007)
Q Consensus 864 ~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 937 (1007)
++|++|++++|.+..++. .+.++++|+.|+|++|.++..+ ..+..+++|++|+|++|+++.+|..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 999999999999774432 3457899999999999999754 445678999999999999999998776 89999
Q ss_pred EeeecCCCCCcCCCCcccccccccccccc
Q 037332 938 LYLINCYMLQTLPELPLRLKLLEARNCKQ 966 (1007)
Q Consensus 938 L~L~~n~~l~~~p~~~~~L~~L~~~~c~~ 966 (1007)
|+|++|++.+. |. +..+..|...+..+
T Consensus 279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 279 LDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp EECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred EECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 99999987665 64 43444443333333
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.5e-20 Score=198.43 Aligned_cols=220 Identities=20% Similarity=0.226 Sum_probs=162.8
Q ss_pred EeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccc
Q 037332 729 DLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKE 808 (1007)
Q Consensus 729 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 808 (1007)
+..+..+..+|..+. ++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|.+..
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344455556665443 467777777765554444466777777777777776655555567777778888888777776
Q ss_pred cc-hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc--cChhhhcCCCCCEEEecCCCCCcCC-cccC
Q 037332 809 LK-SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ--VPASIAHLNEVKSLSFAGCRNLVLP-TLLS 884 (1007)
Q Consensus 809 l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~ 884 (1007)
++ ..+..+++|++|++++|......+..+..+++|+.|++++|.++. +|..+..+++|++|++++|.+..++ ..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 65 457778888888888877666555567788888888888888875 5777888888888888888876654 3454
Q ss_pred CCCCCC----EEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCCcCC
Q 037332 885 GLCSLT----ELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 885 ~l~~L~----~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.+++|+ .|++++|.++.++.......+|+.|++++|+++.+|.. +..+++|+.|+|++|++....|
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 555555 89999999998887776677899999999999988765 5889999999999998876554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.6e-21 Score=220.54 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=100.4
Q ss_pred ccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEecc
Q 037332 746 TTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLR 825 (1007)
Q Consensus 746 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~ 825 (1007)
++|++|++++|......+. .+++|+.|++++|...+..|..++.+++|+.|++++|.+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------ 157 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------------ 157 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC------------------
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC------------------
Confidence 5556666665544333221 2344555555555444444444444445555555444444
Q ss_pred CCCCCccCCcccC-CCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCch
Q 037332 826 ECSKLVSLPENLG-SLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQ 904 (1007)
Q Consensus 826 ~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 904 (1007)
+..|..+. .+++|+.|++++|.++.++. ...+++|+.|++++|.+..+|..+..+++|+.|+|++|.++.+|.
T Consensus 158 -----~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 158 -----TVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp -----EEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred -----CcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch
Confidence 44444333 45555555555555554433 224566666666666666666556667777777777777777777
Q ss_pred hhCCCCCcCEEEccCCCCc--cchhhhcCCCCCCEEeee
Q 037332 905 DIGSVFALEKIDLSGNNFE--TLPASMKQLSRLRYLYLI 941 (1007)
Q Consensus 905 ~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~ 941 (1007)
.+..+++|+.|++++|.+. .+|..+..++.|+.|+++
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7777778888888888777 666677777777777775
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=5e-19 Score=190.07 Aligned_cols=196 Identities=19% Similarity=0.193 Sum_probs=109.6
Q ss_pred CcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccC
Q 037332 723 GNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS 802 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 802 (1007)
.+++.++++++.+..+|..+. ++++.|++++|......+..+..+++|++|++++|.... ++.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECC
Confidence 356677777777777776553 567777777766655555666666777777776655433 2222 556666666666
Q ss_pred cccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEecCCCCCcCCc
Q 037332 803 WTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSFAGCRNLVLPT 881 (1007)
Q Consensus 803 ~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~ 881 (1007)
+|.+..+|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+|.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 666666666556666666666666555544445555555555555555555554432 2344445555555444444443
Q ss_pred -ccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCC
Q 037332 882 -LLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 882 -~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l 922 (1007)
.+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|.+
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 23344444444444444444444444444444444444443
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7.2e-19 Score=188.81 Aligned_cols=202 Identities=20% Similarity=0.278 Sum_probs=178.9
Q ss_pred ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCE
Q 037332 742 IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRN 821 (1007)
Q Consensus 742 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~ 821 (1007)
+.++++++.++++++. +..+|..+. ++++.|++++|...+..+..+..+++|+.|++++|.++.++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 6778899999999864 456676553 6899999999988877788899999999999999999988765 78999999
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCC
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGI 899 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l 899 (1007)
|++++|... .+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..+|. .+..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999998765 67888999999999999999999887 568899999999999999887765 568899999999999999
Q ss_pred CCCchh-hCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCc
Q 037332 900 REIPQD-IGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 900 ~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~ 948 (1007)
+.+|.. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 999875 4789999999999999999999998999999999999987653
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=3.5e-19 Score=190.64 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=180.2
Q ss_pred CCccCC-ccCcceEEEeeCCccccccc-cccccccccEEecCCccccccchhhhhccCccceEEecCCCCCccccccccc
Q 037332 715 LTEFPK-ISGNIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEK 792 (1007)
Q Consensus 715 l~~~~~-~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 792 (1007)
+..+|. ...++++|++++|.+..++. .+..+++|++|++++|......+..+..+++|++|++++|...+..+..+..
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 344554 34578999999999998876 6899999999999999776666667999999999999999888777788999
Q ss_pred CCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCc-cCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCC--
Q 037332 793 MERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLV-SLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVK-- 867 (1007)
Q Consensus 793 l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~-- 867 (1007)
+++|++|++++|.+..++. .+..+++|++|++++|.... .+|..+..+++|+.|++++|.++.++ ..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999999998765 68899999999999998766 46899999999999999999999775 4566666666
Q ss_pred --EEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCc
Q 037332 868 --SLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 868 --~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~ 923 (1007)
.|++++|.+..++.......+|+.|+|++|.++.+|.. +..+++|+.|++++|.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 89999999888877666667999999999999998765 588999999999999887
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-18 Score=184.64 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=123.4
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
.+.++++++.++.+|..+. ++|++|++++|......+ ..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPS------------------------KAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCT------------------------TSSSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCH------------------------HHhcCCCCCCEEECCCC
Confidence 3456666666666665443 345555555544333322 33444444555555544
Q ss_pred cccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh-hhhcCCCCCEEEecCCCCCcCCc-
Q 037332 805 KIKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT- 881 (1007)
Q Consensus 805 ~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~- 881 (1007)
.++.++.. +..+++|++|++++|......+..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+..+|.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 44444432 2445555555555555444444455556666666666666665543 34566777777777776665554
Q ss_pred ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCCCcCC
Q 037332 882 LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 882 ~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.+..+++|+.|+|++|.++.++. .+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|++....+
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 36777888888888888887765 367788888888888888877654 6778888888888888765543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=3.7e-19 Score=185.94 Aligned_cols=208 Identities=16% Similarity=0.253 Sum_probs=121.3
Q ss_pred ccCCccCCccCcceEEEeeCCccccccc-cccccccccEEecCCccccccch-hhhhccCccceEEecC-CCCCcccccc
Q 037332 713 VNLTEFPKISGNIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCTRLKSLS-TSICKLRSLYWLYLNN-CSKLESFPEI 789 (1007)
Q Consensus 713 ~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~-~~~~~~~~~~ 789 (1007)
..++.+|....+++.|++++|.++.+|. .+..+++|++|++++|..+..++ ..|.++++|++|++++ |......+..
T Consensus 21 ~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 21 KDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3355555544467777777777776665 46666666666666665333333 3455566666666665 3333322344
Q ss_pred cccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccc-cCcccCh-hhhcCCCCC
Q 037332 790 LEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERS-AISQVPA-SIAHLNEVK 867 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~-~~~~l~~L~ 867 (1007)
+..+++|+.|++++|.++.+|. +..+++|+ .|+.|++++| .++.++. .+..+++|+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcce
Confidence 5555555555555555555443 33444443 0015555555 5554443 245556666
Q ss_pred -EEEecCCCCCcCCcccCCCCCCCEEeccCCC-CCCCc-hhhCCC-CCcCEEEccCCCCccchhhhcCCCCCCEEeeecC
Q 037332 868 -SLSFAGCRNLVLPTLLSGLCSLTELDLKDCG-IREIP-QDIGSV-FALEKIDLSGNNFETLPASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 868 -~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 943 (1007)
+|++++|....+|......++|+.|+|++|. ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|++++|
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 6666666655555433233677777777774 77764 345667 7888888888888877754 6778888888776
Q ss_pred C
Q 037332 944 Y 944 (1007)
Q Consensus 944 ~ 944 (1007)
.
T Consensus 237 ~ 237 (239)
T 2xwt_C 237 W 237 (239)
T ss_dssp -
T ss_pred c
Confidence 4
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.2e-18 Score=189.16 Aligned_cols=195 Identities=20% Similarity=0.278 Sum_probs=153.8
Q ss_pred ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCE
Q 037332 742 IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRN 821 (1007)
Q Consensus 742 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~ 821 (1007)
...+++|++|++++|... .++ .+..+++|++|++++|.... ++. +..+++|++|++++|.++.++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 455777777777776443 344 46777888888888775544 333 777888888888888887765 5778888888
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCC
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 901 (1007)
|++++|.... ++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|....++. +..+++|+.|++++|.++.
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 8888887654 33 37888888888888888887766 7888899999999998777766 7888999999999999988
Q ss_pred CchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC
Q 037332 902 IPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 902 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|++.+
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 875 788899999999999998887 48889999999999998754
No 87
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.79 E-value=1.6e-20 Score=178.61 Aligned_cols=101 Identities=18% Similarity=0.331 Sum_probs=90.8
Q ss_pred CCCccccEEEcCccccccCchhHHHHHHHHhC--CCceEecC-CCCCCCcchHHHHHHhh-ccceeEEEecCccccchhh
Q 037332 14 NSQYKFDVFLSFRGEDTRYNFTSHLFAALSRK--KIKTFTDE-ELKRGDEISPAILNAII-GSKILVIIFSKNYASSKWC 89 (1007)
Q Consensus 14 ~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~s~~~~~s~~c 89 (1007)
..++.|||||||+++|. .||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.+||+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 45689999999999995 8999999999985 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEEEeeCC
Q 037332 90 LDELVKILECK-NMNDQVVVPVFYHVDP 116 (1007)
Q Consensus 90 ~~el~~~~~~~-~~~~~~v~pvf~~v~~ 116 (1007)
..|+..|+++. +..+++||||||+.-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999875 3334679999998653
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.1e-18 Score=182.36 Aligned_cols=192 Identities=19% Similarity=0.258 Sum_probs=158.2
Q ss_pred ccceEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEec
Q 037332 771 SLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAE 849 (1007)
Q Consensus 771 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 849 (1007)
.++.++++++.. ..+|..+. ++|+.|++++|.+..++. .+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 17 ~~~~l~~~~~~l-~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKL-TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCC-CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 456777777543 34665443 689999999999998875 78999999999999998776666667899999999999
Q ss_pred cccCcccCh-hhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccch
Q 037332 850 RSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 850 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp 926 (1007)
+|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 999998875 46889999999999999877765 578999999999999999998765 789999999999999999887
Q ss_pred h-hhcCCCCCCEEeeecCCCCCcCCCCc---cccccccccccc
Q 037332 927 A-SMKQLSRLRYLYLINCYMLQTLPELP---LRLKLLEARNCK 965 (1007)
Q Consensus 927 ~-~~~~l~~L~~L~L~~n~~l~~~p~~~---~~L~~L~~~~c~ 965 (1007)
. .+..+++|++|+|++|++.+..+..+ ++|+.|++.+++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5 47899999999999998776555444 456666665544
No 89
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.79 E-value=6.8e-21 Score=179.40 Aligned_cols=100 Identities=19% Similarity=0.334 Sum_probs=90.0
Q ss_pred CCccccEEEcCccccccCchhHH-HHHHHHhC--CCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchhhH
Q 037332 15 SQYKFDVFLSFRGEDTRYNFTSH-LFAALSRK--KIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCL 90 (1007)
Q Consensus 15 ~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~ 90 (1007)
.++.|||||||+++|+ .||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999997 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCCeEEEEEEe-eCC
Q 037332 91 DELVKILECK-NMNDQVVVPVFYH-VDP 116 (1007)
Q Consensus 91 ~el~~~~~~~-~~~~~~v~pvf~~-v~~ 116 (1007)
.|+..|+.+. +.++++||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 9999988543 4456789999987 444
No 90
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.79 E-value=1.9e-20 Score=180.71 Aligned_cols=102 Identities=22% Similarity=0.373 Sum_probs=87.9
Q ss_pred CCCCccccEEEcCccccccCchhHH-HHHHHHh--CCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccccchh
Q 037332 13 LNSQYKFDVFLSFRGEDTRYNFTSH-LFAALSR--KKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYASSKW 88 (1007)
Q Consensus 13 ~~~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~ 88 (1007)
...++.|||||||+++|+ +||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999996 89985 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-hcCCCeEEEEEEeeCC
Q 037332 89 CLDELVKILECK-NMNDQVVVPVFYHVDP 116 (1007)
Q Consensus 89 c~~el~~~~~~~-~~~~~~v~pvf~~v~~ 116 (1007)
|..|+..|+.+. +..+++||||||+.-|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998654 4455789999988433
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.7e-21 Score=228.15 Aligned_cols=358 Identities=15% Similarity=0.109 Sum_probs=235.5
Q ss_pred CccccceeeCCCCCc-ccc---c------------cccccccccceeeccCCcCCCCCC-CCC-CCCCCcEEeccccccc
Q 037332 607 DPENLIELNLPHSKI-KQI---W------------EGKKEAFKLKSIDLRYSQYLTRIP-EPS-EIPNLEKINLWNCTNL 668 (1007)
Q Consensus 607 ~l~~L~~L~L~~~~i-~~l---~------------~~~~~l~~L~~L~L~~~~~~~~~~-~~~-~l~~L~~L~L~~~~~~ 668 (1007)
.+++|+.|+++++.. ..+ | .-...+++|+.|+|++|.+....+ .+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 568899999998752 211 1 112467899999999997544333 232 5889999999999655
Q ss_pred CC--CCcccccCCCccEEEecCCCCCc----ccCCCC-CCCCCcEEeccccc-cCC-----ccCCccCcceEEEeeCC-c
Q 037332 669 AY--IPCNIQNFINLGVLCFRGCKSLK----CFPHDI-HFTSPIKIDISYCV-NLT-----EFPKISGNIIVLDLRDS-A 734 (1007)
Q Consensus 669 ~~--l~~~~~~l~~L~~L~l~~~~~l~----~~~~~~-~~~~L~~L~l~~~~-~l~-----~~~~~~~~L~~L~l~~~-~ 734 (1007)
.. ++..+..+++|++|++++|.... .++... .+++|+.|++++|. .+. .+....++|+.|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 44 45555689999999999987221 122222 47799999999886 111 12223478999999988 5
Q ss_pred cccccccccccccccEEecCCccc-------------------c-----------ccchhhhhccCccceEEecCCCCCc
Q 037332 735 IEEVPSSIESLTTLVKLDLSYCTR-------------------L-----------KSLSTSICKLRSLYWLYLNNCSKLE 784 (1007)
Q Consensus 735 i~~lp~~~~~l~~L~~L~l~~~~~-------------------~-----------~~l~~~~~~l~~L~~L~l~~~~~~~ 784 (1007)
+..+|..+..+++|+.|++..|.. + ..++..+..+++|++|++++|....
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 666777788889999998665421 1 1133333456777888887776332
Q ss_pred c-cccccccCCCCceeccCccccc--ccchhhhcCCCCCEEeccCC--------CCCcc--CCcccCCCCCCCEEEeccc
Q 037332 785 S-FPEILEKMERLSYMDLSWTKIK--ELKSSIDHLERLRNLKLREC--------SKLVS--LPENLGSLKSLVYIEAERS 851 (1007)
Q Consensus 785 ~-~~~~l~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~--------~~~~~--~~~~l~~l~~L~~L~l~~~ 851 (1007)
. +...+..+++|+.|++++| +. .++.....+++|++|++.+| ...+. +......+++|+.|.+..+
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 2 2233456778888888776 33 23333446788888888443 22211 1111234788888888888
Q ss_pred cCccc-Chhh-hcCCCCCEEEec--C---CC-CCcCC------cccCCCCCCCEEeccCCCCCC-CchhhCC-CCCcCEE
Q 037332 852 AISQV-PASI-AHLNEVKSLSFA--G---CR-NLVLP------TLLSGLCSLTELDLKDCGIRE-IPQDIGS-VFALEKI 915 (1007)
Q Consensus 852 ~l~~~-~~~~-~~l~~L~~L~l~--~---~~-~~~~~------~~~~~l~~L~~L~L~~n~l~~-lp~~l~~-l~~L~~L 915 (1007)
.++.. +..+ ..+++|+.|+++ + |. ....| ..+.++++|+.|+|++ .++. .+..+.. +++|+.|
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 77732 2233 358999999998 3 33 33222 2356788999999977 5553 2334443 8999999
Q ss_pred EccCCCCcc-chhhh-cCCCCCCEEeeecCCCCCcCC----CCcccccccccccccc
Q 037332 916 DLSGNNFET-LPASM-KQLSRLRYLYLINCYMLQTLP----ELPLRLKLLEARNCKQ 966 (1007)
Q Consensus 916 ~L~~n~l~~-lp~~~-~~l~~L~~L~L~~n~~l~~~p----~~~~~L~~L~~~~c~~ 966 (1007)
+|++|.++. .+..+ ..+++|+.|+|++|++..... ..+++|+.|++.+|+.
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999873 22233 779999999999999843221 3467899999999965
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=6.2e-19 Score=184.21 Aligned_cols=195 Identities=18% Similarity=0.195 Sum_probs=149.6
Q ss_pred ccceEEecCCCCCcccccccccCCCCceeccCccc-ccccch-hhhcCCCCCEEeccC-CCCCccCCcccCCCCCCCEEE
Q 037332 771 SLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK-IKELKS-SIDHLERLRNLKLRE-CSKLVSLPENLGSLKSLVYIE 847 (1007)
Q Consensus 771 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 847 (1007)
+|++|++++|...+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++ |......+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666655544444456666777777777775 666654 566777777777777 444444446778888889999
Q ss_pred eccccCcccChhhhcCCCCC---EEEecCC-CCCcCCc-ccCCCCCCC-EEeccCCCCCCCchhhCCCCCcCEEEccCCC
Q 037332 848 AERSAISQVPASIAHLNEVK---SLSFAGC-RNLVLPT-LLSGLCSLT-ELDLKDCGIREIPQDIGSVFALEKIDLSGNN 921 (1007)
Q Consensus 848 l~~~~l~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~-~~~~l~~L~-~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 921 (1007)
+++|.++.+|. +..+++|+ +|++++| ....++. .+.++++|+ .|++++|+++.+|......++|+.|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 99988888886 77888888 9999999 7777765 588999999 9999999999998776555899999999994
Q ss_pred -Cccchh-hhcCC-CCCCEEeeecCCCCCcCCCCcccccccccccccc
Q 037332 922 -FETLPA-SMKQL-SRLRYLYLINCYMLQTLPELPLRLKLLEARNCKQ 966 (1007)
Q Consensus 922 -l~~lp~-~~~~l-~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c~~ 966 (1007)
++.+|. .+..+ ++|+.|++++|++.+..+..+.+|+.|.+.++..
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC--
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccC
Confidence 998864 57888 9999999999987754445688899998887754
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=3.8e-19 Score=193.74 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred ccccccEEecCCccccccchhhh--hccCccceEEecCCCCCcccc----cccccCCCCceeccCcccccccc-hhhhcC
Q 037332 744 SLTTLVKLDLSYCTRLKSLSTSI--CKLRSLYWLYLNNCSKLESFP----EILEKMERLSYMDLSWTKIKELK-SSIDHL 816 (1007)
Q Consensus 744 ~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~l~~l~-~~~~~l 816 (1007)
.+++|++|++++|......|..+ ..+++|++|++++|...+..+ ..+..+++|++|++++|.+..++ ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34568888888877777777666 778888888888877665443 23446778888888888887655 567788
Q ss_pred CCCCEEeccCCCCCcc--C--CcccCCCCCCCEEEeccccCcccChh----hhcCCCCCEEEecCCCCCcC-CcccCCC-
Q 037332 817 ERLRNLKLRECSKLVS--L--PENLGSLKSLVYIEAERSAISQVPAS----IAHLNEVKSLSFAGCRNLVL-PTLLSGL- 886 (1007)
Q Consensus 817 ~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~l~~~~~~----~~~l~~L~~L~l~~~~~~~~-~~~~~~l- 886 (1007)
++|++|++++|...+. + +..+..+++|++|++++|.++.++.. +..+++|++|++++|.+... |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 8888888888876542 2 23346788888888888888766542 46778999999999887665 6555554
Q ss_pred --CCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC
Q 037332 887 --CSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 887 --~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
++|++|+|++|+++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|++..
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 689999999999998888764 789999999999988764 6788999999999998754
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.9e-18 Score=186.10 Aligned_cols=195 Identities=19% Similarity=0.287 Sum_probs=169.8
Q ss_pred CcceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccC
Q 037332 723 GNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLS 802 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 802 (1007)
.+|+.|+++++.+..+| .+..+++|++|++++|.... ++. +..+++|++|++++|.... ++ .+..+++|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 46788899999999887 58899999999999986544 454 8999999999999987544 44 68899999999999
Q ss_pred cccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcc
Q 037332 803 WTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTL 882 (1007)
Q Consensus 803 ~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 882 (1007)
+|.++.++. +..+++|++|++++|...+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++.
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 999998875 8999999999999997765433 8899999999999999998877 8899999999999999887776
Q ss_pred cCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhh
Q 037332 883 LSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPAS 928 (1007)
Q Consensus 883 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 928 (1007)
+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++..|..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 7889999999999999999884 89999999999999999877644
No 95
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=171.49 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=88.5
Q ss_pred ccccEEEcCccccc---------cCchhHHHHH-HHH-hCCCceEecC-CCCCCCcchHHHHHHhhccceeEEEecCccc
Q 037332 17 YKFDVFLSFRGEDT---------RYNFTSHLFA-ALS-RKKIKTFTDE-ELKRGDEISPAILNAIIGSKILVIIFSKNYA 84 (1007)
Q Consensus 17 ~~~dvfis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~ 84 (1007)
+.|||||||+++|+ +..||.++.. .|+ ++|+++|+|+ |+.+|+.+.++|.+||++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3468888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-hcCCCeEEEEEEeeCC
Q 037332 85 -SSKWCLDELVKILECK-NMNDQVVVPVFYHVDP 116 (1007)
Q Consensus 85 -~s~~c~~el~~~~~~~-~~~~~~v~pvf~~v~~ 116 (1007)
.|.||..|+..++.+. ..++++||||+++..+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999887 5566899999987554
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=2.5e-19 Score=201.99 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=174.0
Q ss_pred CcceEEEeeCCcccc-----ccccccccccccEEecCCccc---cccchhh-------hhccCccceEEecCCCCCc---
Q 037332 723 GNIIVLDLRDSAIEE-----VPSSIESLTTLVKLDLSYCTR---LKSLSTS-------ICKLRSLYWLYLNNCSKLE--- 784 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~---~~~l~~~-------~~~l~~L~~L~l~~~~~~~--- 784 (1007)
.+|+.|++++|.+.. ++..+..+++|++|+|++|.. ...+|.. +..+++|++|++++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 457778888887764 444567788899999988632 2234443 3678899999999887766
Q ss_pred -ccccccccCCCCceeccCcccccc-----cchhhhcC---------CCCCEEeccCCCCC-ccCC---cccCCCCCCCE
Q 037332 785 -SFPEILEKMERLSYMDLSWTKIKE-----LKSSIDHL---------ERLRNLKLRECSKL-VSLP---ENLGSLKSLVY 845 (1007)
Q Consensus 785 -~~~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~l~~l~~L~~ 845 (1007)
.++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|... ..++ ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 467778888999999999998862 33344455 89999999998875 3444 45677889999
Q ss_pred EEeccccCcc------cChhhhcCCCCCEEEecCCCC-----CcCCcccCCCCCCCEEeccCCCCCC-----Cchhh--C
Q 037332 846 IEAERSAISQ------VPASIAHLNEVKSLSFAGCRN-----LVLPTLLSGLCSLTELDLKDCGIRE-----IPQDI--G 907 (1007)
Q Consensus 846 L~l~~~~l~~------~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l--~ 907 (1007)
|++++|.++. ++..+..+++|+.|++++|.+ ..+|..+..+++|+.|+|++|.++. ++..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999998872 233677889999999999986 4567777888999999999999885 46666 4
Q ss_pred CCCCcCEEEccCCCCcc-----chhhh-cCCCCCCEEeeecCCCCCcCC
Q 037332 908 SVFALEKIDLSGNNFET-----LPASM-KQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 908 ~l~~L~~L~L~~n~l~~-----lp~~~-~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.+++|+.|+|++|.++. +|..+ .++++|++|++++|++.+..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 48899999999999886 78777 668999999999998876653
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3.1e-18 Score=182.51 Aligned_cols=205 Identities=19% Similarity=0.284 Sum_probs=130.9
Q ss_pred hhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCE
Q 037332 766 ICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVY 845 (1007)
Q Consensus 766 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 845 (1007)
...+++|+.|++++|... .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|...+..+..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 445666666666665433 222 3566677777777777766653 5666777777777777666555556677777777
Q ss_pred EEeccccCcccChh-hhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCC
Q 037332 846 IEAERSAISQVPAS-IAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 846 L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l 922 (1007)
|++++|.++.++.. +..+++|++|++++|....++. .+..+++|+.|++++|+++.++.. +..+++|+.|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 77777777766543 5667777777777777665554 356777777777777777766543 46677777777777777
Q ss_pred ccchhh-hcCCCCCCEEeeecCCCCCcCCCCcccccccccccccccCCCCCcchhcccc
Q 037332 923 ETLPAS-MKQLSRLRYLYLINCYMLQTLPELPLRLKLLEARNCKQLRSLPELPSCLKGF 980 (1007)
Q Consensus 923 ~~lp~~-~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L 980 (1007)
+.+|.. +..+++|+.|++++|++.+..| +|+.|....+ ...+.+|..++.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n---~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWIN---KHSGVVRNSAGSV 245 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHH---HTGGGBBCTTSCB
T ss_pred CccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHH---hCCCcccCccccc
Confidence 765543 5677777777777777665544 3455544433 2234445544433
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=4.1e-18 Score=181.59 Aligned_cols=224 Identities=17% Similarity=0.257 Sum_probs=186.1
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
..+++..+.+..+. ....+++|+.|++++|... .++ .+..+++|++|++++|...+ + ..+..+++|++|++++|.
T Consensus 22 ~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 22 IKANLKKKSVTDAV-TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC
T ss_pred HHHHhcCccccccc-ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc
Confidence 34455555555443 3677899999999997643 444 48889999999999987655 3 478899999999999999
Q ss_pred ccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEecCCCCCcCCc-c
Q 037332 806 IKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSFAGCRNLVLPT-L 882 (1007)
Q Consensus 806 l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~ 882 (1007)
++.++.. +..+++|++|++++|...+..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..++. .
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 9987754 68999999999999998877777789999999999999999988754 5889999999999999877765 4
Q ss_pred cCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCcccccccc
Q 037332 883 LSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELPLRLKLLE 960 (1007)
Q Consensus 883 ~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~L~~L~ 960 (1007)
+..+++|+.|+|++|.++.++.. +..+++|+.|++++|.+. ..+++|+.|+++.|.+.+.+|..+.++....
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCCCC
Confidence 68899999999999999987654 688999999999999775 3467899999999999999998777666543
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.6e-19 Score=203.45 Aligned_cols=238 Identities=17% Similarity=0.108 Sum_probs=189.8
Q ss_pred EEeeCCccccccccccccccccEEecCCccccccch----hhhhccCccceEEecCCCC---Cccccccc-------ccC
Q 037332 728 LDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLS----TSICKLRSLYWLYLNNCSK---LESFPEIL-------EKM 793 (1007)
Q Consensus 728 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l 793 (1007)
..++...+..++..+..+++|++|++++|......+ ..+..+++|++|++++|.. .+.+|..+ ..+
T Consensus 14 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 14 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 334455666788889999999999999997766543 4467899999999999743 23445443 788
Q ss_pred CCCceeccCcccccc-----cchhhhcCCCCCEEeccCCCCCcc----CCcccCCC---------CCCCEEEeccccCc-
Q 037332 794 ERLSYMDLSWTKIKE-----LKSSIDHLERLRNLKLRECSKLVS----LPENLGSL---------KSLVYIEAERSAIS- 854 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~l~- 854 (1007)
++|++|++++|.+.. ++..+..+++|++|++++|..... ++..+..+ ++|+.|++++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 999999999999986 778899999999999999987533 33334444 89999999999997
Q ss_pred -ccC---hhhhcCCCCCEEEecCCCCC------cCCcccCCCCCCCEEeccCCCCC-----CCchhhCCCCCcCEEEccC
Q 037332 855 -QVP---ASIAHLNEVKSLSFAGCRNL------VLPTLLSGLCSLTELDLKDCGIR-----EIPQDIGSVFALEKIDLSG 919 (1007)
Q Consensus 855 -~~~---~~~~~l~~L~~L~l~~~~~~------~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~ 919 (1007)
.++ ..+..+++|++|++++|.+. ..+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 444 46778999999999999876 34446788999999999999994 5788899999999999999
Q ss_pred CCCcc-----chhhhcC--CCCCCEEeeecCCCCC----cCCCC----ccccccccccccc
Q 037332 920 NNFET-----LPASMKQ--LSRLRYLYLINCYMLQ----TLPEL----PLRLKLLEARNCK 965 (1007)
Q Consensus 920 n~l~~-----lp~~~~~--l~~L~~L~L~~n~~l~----~~p~~----~~~L~~L~~~~c~ 965 (1007)
|.++. +|..+.. +++|+.|+|++|++.. .+|.. +++|+.|++.+|+
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99984 4667744 9999999999998877 46643 3677777776664
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=6.2e-19 Score=194.90 Aligned_cols=229 Identities=15% Similarity=0.135 Sum_probs=156.8
Q ss_pred CcceEEEeeCCccccccccccccccccEEecCCcccccc-chhhhhccCccceEEecCCCCCcccccccccCCCCceecc
Q 037332 723 GNIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKS-LSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDL 801 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 801 (1007)
.+++.|++++|.+...+..+..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456777788888877766677788888888888875544 7777788888888888888766667777778888888888
Q ss_pred Ccc-ccc--ccchhhhcCCCCCEEeccCC-CCCcc-CCcccCCCC-CCCEEEecccc--Cc--ccChhhhcCCCCCEEEe
Q 037332 802 SWT-KIK--ELKSSIDHLERLRNLKLREC-SKLVS-LPENLGSLK-SLVYIEAERSA--IS--QVPASIAHLNEVKSLSF 871 (1007)
Q Consensus 802 ~~n-~l~--~l~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--l~--~~~~~~~~l~~L~~L~l 871 (1007)
++| .++ .++..+..+++|++|++++| ..... ++..+..++ +|+.|++++|. ++ .++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 888 566 36666778888888888888 44432 456667777 88888888874 33 45666677778888888
Q ss_pred cCCCC--CcCCcccCCCCCCCEEeccCCC-CCC-CchhhCCCCCcCEEEccCCCCccchhhhcCC-CCCCEEeeecCCCC
Q 037332 872 AGCRN--LVLPTLLSGLCSLTELDLKDCG-IRE-IPQDIGSVFALEKIDLSGNNFETLPASMKQL-SRLRYLYLINCYML 946 (1007)
Q Consensus 872 ~~~~~--~~~~~~~~~l~~L~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~L~~n~~l 946 (1007)
++|.. ...+..+..+++|+.|+|++|. +.. ....+..+++|+.|++++| ++. ..+..+ .+|+.|++++|++.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCc
Confidence 77773 2345556677777777777774 221 1124566777777777777 331 012222 23455557777777
Q ss_pred CcCCCCcc
Q 037332 947 QTLPELPL 954 (1007)
Q Consensus 947 ~~~p~~~~ 954 (1007)
+..|....
T Consensus 307 ~~~~~~~~ 314 (336)
T 2ast_B 307 TIARPTIG 314 (336)
T ss_dssp CTTCSSCS
T ss_pred cccCCccc
Confidence 76665444
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=185.91 Aligned_cols=216 Identities=14% Similarity=0.100 Sum_probs=170.0
Q ss_pred cccEEecCCcccccc-chh--hhhccCccceEEecCCCCCccccccc--ccCCCCceeccCccccccc-c----hhhhcC
Q 037332 747 TLVKLDLSYCTRLKS-LST--SICKLRSLYWLYLNNCSKLESFPEIL--EKMERLSYMDLSWTKIKEL-K----SSIDHL 816 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~-l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~l-~----~~~~~l 816 (1007)
.++.|.+.++..... +.. .+..+++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666766544322 111 13346779999999999888888887 8999999999999999852 2 244579
Q ss_pred CCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc---cC--hhhhcCCCCCEEEecCCCCCcCCc----ccCCCC
Q 037332 817 ERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ---VP--ASIAHLNEVKSLSFAGCRNLVLPT----LLSGLC 887 (1007)
Q Consensus 817 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---~~--~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~ 887 (1007)
++|++|++++|...+..+..+..+++|+.|++++|.+.. ++ ..+..+++|++|++++|....++. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 999999999999988888899999999999999998763 32 234688999999999999876655 246789
Q ss_pred CCCEEeccCCCCCCC-chhhCCC---CCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCC-cCCCCcccccccccc
Q 037332 888 SLTELDLKDCGIREI-PQDIGSV---FALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQ-TLPELPLRLKLLEAR 962 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~l-p~~l~~l---~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~-~~p~~~~~L~~L~~~ 962 (1007)
+|++|+|++|.++.+ |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|++|++.+ ..+..+++|+.|++.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 999999999999986 7777666 699999999999999987764 899999999998876 334555666666665
Q ss_pred cc
Q 037332 963 NC 964 (1007)
Q Consensus 963 ~c 964 (1007)
++
T Consensus 303 ~N 304 (310)
T 4glp_A 303 GN 304 (310)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2.1e-18 Score=190.60 Aligned_cols=195 Identities=16% Similarity=0.176 Sum_probs=104.7
Q ss_pred cceeeCCCCCccccccccccc--cccceeeccCCcCCCCCCCCCCCCCCcEEecccccccCC-CCcccccCCCccEEEec
Q 037332 611 LIELNLPHSKIKQIWEGKKEA--FKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNCTNLAY-IPCNIQNFINLGVLCFR 687 (1007)
Q Consensus 611 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~l~ 687 (1007)
++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 556666666655 3445555 778888888887777666666777777777777653322 44555555666666555
Q ss_pred CCCCCcccCCCCCCCCCcEEeccccccCCccCCccCcceEEEeeCCccc-cccccccccccccEEecCCccccc--cchh
Q 037332 688 GCKSLKCFPHDIHFTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIE-EVPSSIESLTTLVKLDLSYCTRLK--SLST 764 (1007)
Q Consensus 688 ~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~--~l~~ 764 (1007)
+|. +. ..|..+..+++|++|++++|.... .++.
T Consensus 127 ~~~--------------------------------------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 127 GLR--------------------------------------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp TCB--------------------------------------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred Ccc--------------------------------------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 542 11 223334455566666666653332 2444
Q ss_pred hhhccCccceEEecCC-CCCcc-cccccccCC-CCceeccCccc--c--cccchhhhcCCCCCEEeccCCC-CCccCCcc
Q 037332 765 SICKLRSLYWLYLNNC-SKLES-FPEILEKME-RLSYMDLSWTK--I--KELKSSIDHLERLRNLKLRECS-KLVSLPEN 836 (1007)
Q Consensus 765 ~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~n~--l--~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 836 (1007)
.+..+++|++|++++| ..... ++..+..++ +|++|++++|. + ..++..+..+++|++|++++|. .....+..
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 4555566666666655 33221 344455555 55555555553 2 2344444555555555555554 22233333
Q ss_pred cCCCCCCCEEEeccc
Q 037332 837 LGSLKSLVYIEAERS 851 (1007)
Q Consensus 837 l~~l~~L~~L~l~~~ 851 (1007)
+..+++|+.|++++|
T Consensus 243 l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 243 FFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HhCCCCCCEeeCCCC
Confidence 344444444444443
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=8.4e-18 Score=195.55 Aligned_cols=186 Identities=20% Similarity=0.264 Sum_probs=116.9
Q ss_pred cccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccC
Q 037332 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRE 826 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 826 (1007)
+|+.|++++|... .+|..+ +++|++|++++|... .+| ..+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 5555555554432 244433 245666666665443 444 335666666666666666665 333 666777766
Q ss_pred CCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhh
Q 037332 827 CSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDI 906 (1007)
Q Consensus 827 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 906 (1007)
|...+ +|. .+++|+.|++++|.++.+|. .+++|++|++++|.+..+|. +. ++|+.|+|++|+|+.+|. +
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence 65544 444 46677777777777776665 45677777777777666666 44 677777777777777776 4
Q ss_pred CCCCCc-------CEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcCCCCccc
Q 037332 907 GSVFAL-------EKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTLPELPLR 955 (1007)
Q Consensus 907 ~~l~~L-------~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~p~~~~~ 955 (1007)
.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++.+.+|..+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 43 55 7777777777777777767777777777777777766644433
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.8e-17 Score=179.00 Aligned_cols=236 Identities=26% Similarity=0.315 Sum_probs=160.4
Q ss_pred eEEEecCCCCCCCCCCCCccccceeeCCCCCcccccc-ccccccccceeeccCCcCCCCCCC--CCCCCCCcEEeccccc
Q 037332 590 RYFHWHGYPLKTLPFNFDPENLIELNLPHSKIKQIWE-GKKEAFKLKSIDLRYSQYLTRIPE--PSEIPNLEKINLWNCT 666 (1007)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~L~~~~ 666 (1007)
+.+++++++++++|..+ ++++++|+|++|+|+.+|. .+..+++|++|+|++|.+.+.+|. +.++++|+++...+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46778888899999776 5789999999999999986 478899999999999998776663 6788888775555444
Q ss_pred ccCCC-CcccccCCCccEEEecCCCCCcccCCCCC--CCCCcEEeccccccCCccCCccCcceEEEeeCCcccccccc-c
Q 037332 667 NLAYI-PCNIQNFINLGVLCFRGCKSLKCFPHDIH--FTSPIKIDISYCVNLTEFPKISGNIIVLDLRDSAIEEVPSS-I 742 (1007)
Q Consensus 667 ~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~ 742 (1007)
.+..+ |..+..+++|++|++++|.. ..++.... ...+..+++.++ +.+..+|.. +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~--------------------~~i~~l~~~~f 149 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDN--------------------INIHTIERNSF 149 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESC--------------------TTCCEECTTSS
T ss_pred cccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccc--------------------cccccccccch
Confidence 44444 66788999999999988753 33333221 233334444333 344444432 3
Q ss_pred ccc-ccccEEecCCccccccchhhhhccCccceEEecCCCCCccccc-ccccCCCCceeccCcccccccchhhhcCCCCC
Q 037332 743 ESL-TTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPE-ILEKMERLSYMDLSWTKIKELKSSIDHLERLR 820 (1007)
Q Consensus 743 ~~l-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~ 820 (1007)
..+ ..++.|++++|.. ..++.......+|+.|.+.+++.++.+|. .|..+++|+.|++++|+++.+|.. .+.+|+
T Consensus 150 ~~~~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~ 226 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLK 226 (350)
T ss_dssp TTSBSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCC
T ss_pred hhcchhhhhhccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccch
Confidence 333 3466666666543 33444444455677777766666666654 467788888888888888887753 367788
Q ss_pred EEeccCCCCCccCCcccCCCCCCCEEEeccc
Q 037332 821 NLKLRECSKLVSLPENLGSLKSLVYIEAERS 851 (1007)
Q Consensus 821 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 851 (1007)
.|.+.++..+..+|. +.++++|+.+++.++
T Consensus 227 ~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 888888777777773 677777777777643
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=6.6e-17 Score=188.01 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=155.3
Q ss_pred cceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCc
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSW 803 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 803 (1007)
+++.|++++|.+..+|..+. ++|++|++++|... .+| ..+++|+.|++++|...+ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 67788888898888888663 78999999998655 667 457899999999986665 676 554 999999999
Q ss_pred ccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCccc
Q 037332 804 TKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLL 883 (1007)
Q Consensus 804 n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 883 (1007)
|.++.+|. .+++|+.|++++|...+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+..+|. +
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence 99998887 68999999999988765 665 57899999999999999888 55 899999999999888888 5
Q ss_pred CCCCCC-------CEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc-cchhhhcCC
Q 037332 884 SGLCSL-------TELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE-TLPASMKQL 932 (1007)
Q Consensus 884 ~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l 932 (1007)
.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 44 77 9999999999999999989999999999999998 567666554
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=5.5e-18 Score=188.86 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=139.5
Q ss_pred ccCcceEEEeeCCcccccc-----ccccccc-cccEEecCCccccccchhhhhcc-----CccceEEecCCCCCcccccc
Q 037332 721 ISGNIIVLDLRDSAIEEVP-----SSIESLT-TLVKLDLSYCTRLKSLSTSICKL-----RSLYWLYLNNCSKLESFPEI 789 (1007)
Q Consensus 721 ~~~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~ 789 (1007)
...+|++|++++|.+...+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|......+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3345777777777777665 3456666 77777777776665555555554 77777777777655444443
Q ss_pred ----cccC-CCCceeccCcccccccch-----hhhc-CCCCCEEeccCCCCCc----cCCcccCCCC-CCCEEEeccccC
Q 037332 790 ----LEKM-ERLSYMDLSWTKIKELKS-----SIDH-LERLRNLKLRECSKLV----SLPENLGSLK-SLVYIEAERSAI 853 (1007)
Q Consensus 790 ----l~~l-~~L~~L~l~~n~l~~l~~-----~~~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L~l~~~~l 853 (1007)
+..+ ++|+.|++++|.++..+. .+.. .++|++|++++|.... .++..+..++ +|+.|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3333 677777777777764432 2333 2577777777776553 2333344444 777777777777
Q ss_pred cccCh-----hhhcC-CCCCEEEecCCCCCc-----CCcccCC-CCCCCEEeccCCCCCCCc-----hhhCCCCCcCEEE
Q 037332 854 SQVPA-----SIAHL-NEVKSLSFAGCRNLV-----LPTLLSG-LCSLTELDLKDCGIREIP-----QDIGSVFALEKID 916 (1007)
Q Consensus 854 ~~~~~-----~~~~l-~~L~~L~l~~~~~~~-----~~~~~~~-l~~L~~L~L~~n~l~~lp-----~~l~~l~~L~~L~ 916 (1007)
+.... .+..+ ++|++|++++|.+.. ++..+.. .++|++|+|++|.++..+ ..+..+++|++|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 64432 33444 477777777777554 3443433 347777777777776542 2345667777777
Q ss_pred ccCCCCc--------cchhhhcCCCCCCEEeeecCCCCCc
Q 037332 917 LSGNNFE--------TLPASMKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 917 L~~n~l~--------~lp~~~~~l~~L~~L~L~~n~~l~~ 948 (1007)
|++|.+. .++..+..+++|+.|++++|++...
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7777633 2333456667777777777765544
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=7.6e-17 Score=178.58 Aligned_cols=228 Identities=19% Similarity=0.266 Sum_probs=181.3
Q ss_pred ccCCccCC-ccCcceEEEeeCCccccccc-cccccccccEEecCCccccccchh-hhhccCccceEEec-CCCCCccccc
Q 037332 713 VNLTEFPK-ISGNIIVLDLRDSAIEEVPS-SIESLTTLVKLDLSYCTRLKSLST-SICKLRSLYWLYLN-NCSKLESFPE 788 (1007)
Q Consensus 713 ~~l~~~~~-~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~-~~~~~~~~~~ 788 (1007)
..++.+|. .+.++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|..+.+. +|......|.
T Consensus 19 ~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 35777775 44689999999999999986 489999999999999988777764 57888888775544 4445555567
Q ss_pred ccccCCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCc-ccCCCC-CCCEEEeccccCcccChhhhcCCC
Q 037332 789 ILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPE-NLGSLK-SLVYIEAERSAISQVPASIAHLNE 865 (1007)
Q Consensus 789 ~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~~~~~~~~l~~ 865 (1007)
.+..+++|++|++++|.+..++. .+....++..|++.++.....++. .+..+. .++.|++++|.++.++.......+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 88999999999999999997765 455677888899988776665554 455554 688899999999999887777788
Q ss_pred CCEEEecC-CCCCcCCc-ccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCC-CCccchhhhcCCCCCCEEeeec
Q 037332 866 VKSLSFAG-CRNLVLPT-LLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGN-NFETLPASMKQLSRLRYLYLIN 942 (1007)
Q Consensus 866 L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~ 942 (1007)
|++|.+.+ |....+|. .|.++++|+.|+|++|+|+.+|.. .+.+|+.|.+.++ +++.+| .+..+++|+.+++.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 99999975 55777775 578899999999999999999873 4677888887664 677888 578899999999875
Q ss_pred C
Q 037332 943 C 943 (1007)
Q Consensus 943 n 943 (1007)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 4
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=2.8e-16 Score=165.20 Aligned_cols=174 Identities=20% Similarity=0.299 Sum_probs=107.3
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
.+.++++++.+..+|..+. ++|+.|++++|......+..+.++++|++|++++|...+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566677777777776554 46666666666555544445555555555555555544444444444555555555554
Q ss_pred cccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEecCCCCCcCCc-c
Q 037332 805 KIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSFAGCRNLVLPT-L 882 (1007)
Q Consensus 805 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~ 882 (1007)
.++. ..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..++. .
T Consensus 94 ~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 94 QLAS-----------------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccc-----------------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 4443 3344455555666666666666655443 4556666777776666655554 4
Q ss_pred cCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCc
Q 037332 883 LSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 883 ~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 923 (1007)
+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6777788888888888877654 5677888888888888776
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=5.5e-18 Score=188.88 Aligned_cols=179 Identities=14% Similarity=0.090 Sum_probs=116.0
Q ss_pred ccccEEecCCccccccchhhh----hcc-CccceEEecCCCCCccccccc----cc-CCCCceeccCccccc-----ccc
Q 037332 746 TTLVKLDLSYCTRLKSLSTSI----CKL-RSLYWLYLNNCSKLESFPEIL----EK-MERLSYMDLSWTKIK-----ELK 810 (1007)
Q Consensus 746 ~~L~~L~l~~~~~~~~l~~~~----~~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~n~l~-----~l~ 810 (1007)
++|++|++++|......+..+ ..+ ++|++|++++|......+..+ .. .++|++|++++|.+. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 556666666655444433332 223 566666666665544333322 22 247777777777766 344
Q ss_pred hhhhcCC-CCCEEeccCCCCCccCCc----ccCCC-CCCCEEEeccccCcc-----cChhhhc-CCCCCEEEecCCCCCc
Q 037332 811 SSIDHLE-RLRNLKLRECSKLVSLPE----NLGSL-KSLVYIEAERSAISQ-----VPASIAH-LNEVKSLSFAGCRNLV 878 (1007)
Q Consensus 811 ~~~~~l~-~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~l~~-----~~~~~~~-l~~L~~L~l~~~~~~~ 878 (1007)
..+..++ +|++|++++|......+. .+..+ ++|+.|++++|.++. ++..+.. .++|++|++++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4555555 777777777766554433 33444 478888888888775 5666655 3589999999888655
Q ss_pred CC-----cccCCCCCCCEEeccCCCCCC--------CchhhCCCCCcCEEEccCCCCcc
Q 037332 879 LP-----TLLSGLCSLTELDLKDCGIRE--------IPQDIGSVFALEKIDLSGNNFET 924 (1007)
Q Consensus 879 ~~-----~~~~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~n~l~~ 924 (1007)
.+ ..+..+++|+.|+|++|.+.. ++..+..+++|+.|++++|.+..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 43 345778899999999998443 34456788899999999998873
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=4.3e-16 Score=163.78 Aligned_cols=177 Identities=20% Similarity=0.283 Sum_probs=149.0
Q ss_pred ccceEEecCCCCCcccccccccCCCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEec
Q 037332 771 SLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAE 849 (1007)
Q Consensus 771 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 849 (1007)
..+.++++++. +..+|..+. ++|+.|++++|.+..++. .+..+++|++|++++|...+..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45667777643 445555443 578888888888886654 67888999999999988887777889999999999999
Q ss_pred cccCcccCh-hhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCccch
Q 037332 850 RSAISQVPA-SIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 850 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
+|.++.++. .+..+++|++|++++|.+..++. .+..+++|+.|+|++|+++.+|. .+..+++|++|+|++|+++.+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999998874 56889999999999999888776 46889999999999999999876 5889999999999999999877
Q ss_pred h-hhcCCCCCCEEeeecCCCCCcCC
Q 037332 927 A-SMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 927 ~-~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
. .+..+++|+.|+|++|++....+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 5 68899999999999999877644
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.2e-16 Score=169.68 Aligned_cols=173 Identities=25% Similarity=0.313 Sum_probs=135.4
Q ss_pred hhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCE
Q 037332 766 ICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVY 845 (1007)
Q Consensus 766 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 845 (1007)
+..+++|+.|++++|.... ++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.... ++ .+..+++|+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3456777777777765433 33 36777788888888888877766 7778888888888876544 33 4778888888
Q ss_pred EEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccc
Q 037332 846 IEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETL 925 (1007)
Q Consensus 846 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 925 (1007)
|++++|.++.++ .+..+++|+.|++++|....+ ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.+
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 888888888764 577888899999988887766 457788899999999999988876 88899999999999999888
Q ss_pred hhhhcCCCCCCEEeeecCCCCC
Q 037332 926 PASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 926 p~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
| .+..+++|+.|++++|++..
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEEC
T ss_pred h-hhccCCCCCEEECcCCcccC
Confidence 7 48889999999999997665
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.3e-18 Score=201.70 Aligned_cols=202 Identities=19% Similarity=0.165 Sum_probs=120.3
Q ss_pred cceEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceec-cC
Q 037332 724 NIIVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMD-LS 802 (1007)
Q Consensus 724 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~-l~ 802 (1007)
+|+.|+|++|.++.+|..++.+++|+.|++++|.....+|..+. .+...+..|..++.+++|+.|+ ++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcccCcchh
Confidence 55667788888889999999999999999877643222222111 1122344555566666666666 45
Q ss_pred cccccccch------hhhc--CCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCC
Q 037332 803 WTKIKELKS------SIDH--LERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGC 874 (1007)
Q Consensus 803 ~n~l~~l~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~ 874 (1007)
.|.+..++. .+.. ...|+.|++++|...+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 444433221 0111 1246667777665443 454 66666666666666666666666666666666666666
Q ss_pred CCCcCCcccCCCCCCCEEeccCCCCCCC--chhhCCCCCcCEEEccCCCCccchhh----hcCCCCCCEEe
Q 037332 875 RNLVLPTLLSGLCSLTELDLKDCGIREI--PQDIGSVFALEKIDLSGNNFETLPAS----MKQLSRLRYLY 939 (1007)
Q Consensus 875 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~----~~~l~~L~~L~ 939 (1007)
.+..+| .+.++++|+.|+|++|+++.+ |..++.+++|+.|+|++|.++.+|+. +..+++|+.|+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 665555 456666666666666666655 56666666666666666666654432 23356666654
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=4e-16 Score=167.59 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=143.8
Q ss_pred ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCE
Q 037332 742 IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRN 821 (1007)
Q Consensus 742 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~ 821 (1007)
+..+++|+.|++++|... .++ .+..+++|+.|++++|...+..+ +..+++|+.|++++|.++.++. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 456788888888887543 344 47778888888888876655433 7888889999999888888664 888899999
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCC
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIRE 901 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 901 (1007)
|++++|.... + ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++. +..+++|+.|+|++|.++.
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 9999887655 3 4678889999999999999887 568889999999999999887776 8899999999999999999
Q ss_pred CchhhCCCCCcCEEEccCCCCccch
Q 037332 902 IPQDIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 902 lp~~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
++. +..+++|+.|++++|.++..|
T Consensus 193 l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred Chh-hccCCCCCEEECcCCcccCCc
Confidence 875 889999999999999887655
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=4.4e-16 Score=183.41 Aligned_cols=193 Identities=24% Similarity=0.298 Sum_probs=142.2
Q ss_pred cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEec
Q 037332 745 LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKL 824 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l 824 (1007)
+..+..+.+..+......+ +..+++|+.|++++|... .++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 3444555555543333222 456777777777776543 333 46778888888888888877766 778888888888
Q ss_pred cCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCch
Q 037332 825 RECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQ 904 (1007)
Q Consensus 825 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 904 (1007)
++|.... +| .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..++.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh
Confidence 8876543 33 6778888888888888888764 477888888888888887766 457788888888888888888766
Q ss_pred hhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCc
Q 037332 905 DIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 905 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~ 948 (1007)
+..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++...
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 788888888888888888775 578888888888888877653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1e-15 Score=161.58 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=88.5
Q ss_pred cCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEe
Q 037332 792 KMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSF 871 (1007)
Q Consensus 792 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l 871 (1007)
.+++|+.|++++|.++.++ .+..+++|++|++++|...+.. . +..+++|+.|++++|.++.++.... ++|+.|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 3444444444444444443 3444444555555444433222 2 4555555555555555555543222 66666666
Q ss_pred cCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCc
Q 037332 872 AGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 872 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~ 948 (1007)
++|.+..++ .+..+++|+.|+|++|+++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|++...
T Consensus 114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 666665554 3667777777777777777775 567777777777777777766 4667777778888877776554
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.9e-15 Score=177.90 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=145.1
Q ss_pred EeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccc
Q 037332 729 DLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKE 808 (1007)
Q Consensus 729 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 808 (1007)
.+..+.+..+.. +..+++|+.|++++|.. ..++ .+..+++|+.|+|++|......+ +..+++|+.|+|++|.+..
T Consensus 27 ~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hccCCCcccccc-hhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 334444444433 56778888888888654 3444 47788888888888876655433 7788888888888888887
Q ss_pred cchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCC
Q 037332 809 LKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCS 888 (1007)
Q Consensus 809 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 888 (1007)
++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..++. +..+++
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~ 176 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK 176 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCC
Confidence 65 67888888888888887654 3 4578888899999999988887 567888999999999998777766 788899
Q ss_pred CCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccch
Q 037332 889 LTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 889 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 926 (1007)
|+.|+|++|.++.+| .+..+++|+.|+|++|.+...|
T Consensus 177 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 999999999998885 5888999999999999887655
No 117
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.1e-14 Score=161.59 Aligned_cols=289 Identities=14% Similarity=0.121 Sum_probs=171.8
Q ss_pred cccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh---ccCc
Q 037332 186 VTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE---KEGV 262 (1007)
Q Consensus 186 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~ 262 (1007)
+.++..+..|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+. +..... ...
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~- 73 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHIT- 73 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBC-
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCC-
Confidence 345556678999999999999998653 689999999999999999999875 2 44443 332210 011
Q ss_pred HHHHHHHHHHHHhc----------------cccc---ccCcchHHHHHHHhCC-CcEEEEEecCCCchh---------hH
Q 037332 263 LVRLRERILSEILD----------------ENIK---IRTPNLSECIKKRLRQ-MDVFIVLDDVNKVGQ---------LD 313 (1007)
Q Consensus 263 ~~~l~~~l~~~~~~----------------~~~~---~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~---------~~ 313 (1007)
...+.+.+...+.. .... ....++.+.+.+..+. ++++|||||++.... +.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 33344444333221 0000 0011233344444432 389999999976542 22
Q ss_pred HHhcCCCCCCCCCeEEEEeCChhhHhh-----------cC-cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHH
Q 037332 314 YLAGGLDQFGPGSKIIVTTRDKRVLDN-----------FG-VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSER 381 (1007)
Q Consensus 314 ~l~~~~~~~~~gs~iliTtR~~~v~~~-----------~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~ 381 (1007)
.+...... .++.++|+|++...+... .+ ....+++.+|+.+|+.+++....-...... ..+.+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~ 230 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEE 230 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHH
Confidence 22221111 247789999987653221 11 124789999999999999976542111111 1346788
Q ss_pred HHHHhCCCchHHHHHhhhhcC-CCHHHHH-HHHHHhhhCCCCchHHHHHhhhhcc---chhhHHHhhhhhcccCCCCHHH
Q 037332 382 VLYYANGNPLALRVLGSFLHQ-KNKLDWE-IALENLKLICDPDIYDVLKVSYNEL---KAEEKSMFLDIACFFKGEDKDY 456 (1007)
Q Consensus 382 i~~~~~g~PLal~~~~~~l~~-~~~~~w~-~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~ 456 (1007)
+++.++|+|+++..++..+.. .+...+. ...+. +...+.-.+..+ ++..+.++..+|+ .......
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~ 300 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------AKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSL 300 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHH
Confidence 999999999999998876432 2222221 11111 111122222333 6888999998887 2234444
Q ss_pred HHHhhc-CC-Cc----hhHhHHHHhhccCeEEccCCeEe-hhHHHHHHHH
Q 037332 457 VTMSQD-DP-NF----AYYVLNVLVDKSLVTISCFNKLQ-MHDLLQEMGQ 499 (1007)
Q Consensus 457 ~~~~~~-~~-~~----~~~~l~~L~~~~li~~~~~~~~~-mH~lv~~~~~ 499 (1007)
+..... .. +. ...+++.|++.++|... .+.|. .|++++++.+
T Consensus 301 l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 433321 11 22 56789999999999876 45665 5788887653
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.6e-15 Score=152.75 Aligned_cols=150 Identities=15% Similarity=0.278 Sum_probs=90.3
Q ss_pred cCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc-cChhhhcCCCCCEEE
Q 037332 792 KMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ-VPASIAHLNEVKSLS 870 (1007)
Q Consensus 792 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~ 870 (1007)
.+++|+.|++++|.+..+| .+..+++|++|++++|.. .. +..+..+++|+.|++++|.++. .+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444444555544444444 345555555555555522 11 2245555566666666665553 344555666666666
Q ss_pred ecCCCCCc-CCcccCCCCCCCEEeccCCC-CCCCchhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCC
Q 037332 871 FAGCRNLV-LPTLLSGLCSLTELDLKDCG-IREIPQDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 871 l~~~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l 946 (1007)
+++|.... .+..+..+++|++|+|++|. ++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 66666443 34556677777777777776 66666 5677778888888888777776 6777788888888887653
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=6.3e-15 Score=149.99 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=94.6
Q ss_pred CCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEe
Q 037332 794 ERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSF 871 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l 871 (1007)
++|++|++++|.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 456666666666655543 245566666666666555444444456666666666666666655443 455666666666
Q ss_pred cCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecCCCCCcC
Q 037332 872 AGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINCYMLQTL 949 (1007)
Q Consensus 872 ~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~~l~~~ 949 (1007)
++|.+..++. .+..+++|+.|+|++|.++.++.. +..+++|+.|++++|.+. ..+++|+.|+++.|.+.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCcee
Confidence 6666555544 355666677777777766666543 566667777777766543 23456666777777666666
Q ss_pred CCCccccc
Q 037332 950 PELPLRLK 957 (1007)
Q Consensus 950 p~~~~~L~ 957 (1007)
|..+..+.
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 65554443
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=3.1e-15 Score=150.65 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=119.2
Q ss_pred hccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEE
Q 037332 767 CKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYI 846 (1007)
Q Consensus 767 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (1007)
..+++|+.|++++|... .+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......+..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55667777777776544 445 5677778888888877666554 67778888888888888777677788888888889
Q ss_pred EeccccCcc-cChhhhcCCCCCEEEecCCC-CCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc
Q 037332 847 EAERSAISQ-VPASIAHLNEVKSLSFAGCR-NLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 847 ~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
++++|.++. .+..+..+++|++|++++|. ...+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 988888884 56778888999999999987 77776 5788899999999999999887 7788999999999999875
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=9.7e-15 Score=150.74 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=124.8
Q ss_pred CceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEecCC
Q 037332 796 LSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSFAGC 874 (1007)
Q Consensus 796 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~ 874 (1007)
.+.++++++.+..+|..+. ++|+.|++++|...+..|..+..+++|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4566777777777776443 7788888888887777777888888888888888888877644 578888999999888
Q ss_pred CCCcCCc-ccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCCcCC
Q 037332 875 RNLVLPT-LLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 875 ~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
.+..++. .+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++....+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8777765 4678999999999999999999999999999999999999998874 47889999999999998776544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.8e-17 Score=190.52 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=151.1
Q ss_pred cccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEE
Q 037332 743 ESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNL 822 (1007)
Q Consensus 743 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 822 (1007)
..+++|+.|+|++|. ++.+|..++++++|+.|++++|..+..++..+ ..+ +.....|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~----~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLM------RAL----DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHH----CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHH------Hhc----ccccCCHHHHHHHHhcccC
Confidence 567889999999965 45889999999999999987653322222211 111 1223456777888888888
Q ss_pred e-ccCCCCCccCCc------ccCC--CCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEe
Q 037332 823 K-LRECSKLVSLPE------NLGS--LKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELD 893 (1007)
Q Consensus 823 ~-l~~~~~~~~~~~------~l~~--l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 893 (1007)
+ ++.|.. ..++. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.+..+|..+.++++|+.|+
T Consensus 415 ~~l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 415 DPMRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492 (567)
T ss_dssp CGGGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred cchhhccc-chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence 7 443321 11110 0100 1358999999999999987 9999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhCCCCCcCEEEccCCCCccc--hhhhcCCCCCCEEeeecCCCCCcCC
Q 037332 894 LKDCGIREIPQDIGSVFALEKIDLSGNNFETL--PASMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 894 L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
|++|.++.+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++.+..|
T Consensus 493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999998 899999999999999999987 8899999999999999998877655
No 123
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.9e-14 Score=160.34 Aligned_cols=291 Identities=17% Similarity=0.109 Sum_probs=166.8
Q ss_pred cccCCCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchh-----hhcc
Q 037332 186 VTISTDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREE-----SEKE 260 (1007)
Q Consensus 186 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-----~~~~ 260 (1007)
+.++..+..||||++++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. +... ....
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHH
Confidence 3444556789999999999999 753 599999999999999999999886432 34443 3321 0111
Q ss_pred CcHHHHHHHHHHH---------Hhccc------c-ccc------CcchHHHHHHHhCC---CcEEEEEecCCCch-----
Q 037332 261 GVLVRLRERILSE---------ILDEN------I-KIR------TPNLSECIKKRLRQ---MDVFIVLDDVNKVG----- 310 (1007)
Q Consensus 261 ~~~~~l~~~l~~~---------~~~~~------~-~~~------~~~~~~~l~~~l~~---kr~LlVlDdv~~~~----- 310 (1007)
..+..+.+.+... ..... . ... .......+.+.+.. ++++|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 1122222222110 00000 0 000 01112222233321 48999999996643
Q ss_pred hhHHHhcCCCCCCCCCeEEEEeCChhhHhh-----------cCc-ccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHH
Q 037332 311 QLDYLAGGLDQFGPGSKIIVTTRDKRVLDN-----------FGV-SNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVL 378 (1007)
Q Consensus 311 ~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-----------~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~ 378 (1007)
++..+...+....++.++|+|+|....... .+. ...+++.+|+.+|+.+++...+..........
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--- 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--- 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH---
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH---
Confidence 222222211111246789999998653221 111 25789999999999999987542111111111
Q ss_pred HHHHHHHhCCCchHHHHHhhhhcC-CCHHHHHH-HHHHhhhCCCCchHHHHH-hhh--hccchhhHHHhhhhhcccCCCC
Q 037332 379 SERVLYYANGNPLALRVLGSFLHQ-KNKLDWEI-ALENLKLICDPDIYDVLK-VSY--NELKAEEKSMFLDIACFFKGED 453 (1007)
Q Consensus 379 ~~~i~~~~~g~PLal~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~f~~~~~ 453 (1007)
.+|++.++|+|+++..++..+.. .+...|.. ..+.... .+...+. +.+ ..+++..+.++..+|+ . . .
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----LILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred -HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 78999999999999999877642 23333321 1111100 1111111 111 1688899999999998 2 2 4
Q ss_pred HHHHHHh----hcC-CC--chhHhHHHHhhccCeEEccCCeEe-hhHHHHHHH
Q 037332 454 KDYVTMS----QDD-PN--FAYYVLNVLVDKSLVTISCFNKLQ-MHDLLQEMG 498 (1007)
Q Consensus 454 ~~~~~~~----~~~-~~--~~~~~l~~L~~~~li~~~~~~~~~-mH~lv~~~~ 498 (1007)
...+... ... .. -...+++.|+++++|.... +.|+ .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 4444322 210 11 1567899999999998874 5555 678888764
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=5.9e-15 Score=150.18 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=94.0
Q ss_pred EEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccc
Q 037332 727 VLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKI 806 (1007)
Q Consensus 727 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 806 (1007)
.++.+++.+..+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 5566667777777544 34667777776654443333455566666666666544433333445555555555555555
Q ss_pred cccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCc-ccC
Q 037332 807 KELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLS 884 (1007)
Q Consensus 807 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 884 (1007)
+.++.. +..+++|++|++++|...+..+..+ ..+++|+.|++++|.+..++. .+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------------------~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-----------------------DKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------TTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHh-----------------------ccCCcCCEEECCCCccceeCHHHhc
Confidence 544432 3444555555555444433333334 444555555555555444433 245
Q ss_pred CCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc-cchhhhcCCCC
Q 037332 885 GLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE-TLPASMKQLSR 934 (1007)
Q Consensus 885 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~ 934 (1007)
.+++|+.|+|++|.+. +.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 146 ~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 5556666666666433 23455666666666665 56655554443
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.9e-14 Score=147.44 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=92.5
Q ss_pred eeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCC
Q 037332 798 YMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 798 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~ 876 (1007)
.++++++.++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|.++.+ |..+..+++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44455555555554332 4555555555555444444555666666666666666654 44556666666666666666
Q ss_pred CcCCc-ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCC
Q 037332 877 LVLPT-LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 877 ~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~ 947 (1007)
..+|. .+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|+|++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 55554 356677777777777777765 4556777777777777777776654 36677777777777776644
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=146.75 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=87.4
Q ss_pred eeccCcccccccchhhhcCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCcccCh-hhhcCCCCCEEEecCCC
Q 037332 798 YMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQVPA-SIAHLNEVKSLSFAGCR 875 (1007)
Q Consensus 798 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 875 (1007)
.+++++|.++.+|..+ .+.++.|++++|...+..+ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4444444444444332 2234455555544443322 234555555555555555555443 45556666666666666
Q ss_pred CCcCCc-ccCCCCCCCEEeccCCCCCCC-chhhCCCCCcCEEEccCCCCccc-hhhhcCCCCCCEEeeecCCCCCcC
Q 037332 876 NLVLPT-LLSGLCSLTELDLKDCGIREI-PQDIGSVFALEKIDLSGNNFETL-PASMKQLSRLRYLYLINCYMLQTL 949 (1007)
Q Consensus 876 ~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~~l~~~ 949 (1007)
+..++. .+.++++|++|+|++|+++.+ |..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++....
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 554443 356667777777777777765 45566777777777777777755 556677777777777777665543
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.1e-14 Score=153.56 Aligned_cols=173 Identities=21% Similarity=0.240 Sum_probs=131.1
Q ss_pred ccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccccccchhhhcCCCCCEEe
Q 037332 744 SLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKIKELKSSIDHLERLRNLK 823 (1007)
Q Consensus 744 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~ 823 (1007)
.+.++..++++++... .++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.+..++. +..+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4566666777765433 333 4667778888888876443 444 57778888888888888887776 77888888888
Q ss_pred ccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCc
Q 037332 824 LRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIP 903 (1007)
Q Consensus 824 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 903 (1007)
+++|...+ +|.. .. ++|+.|++++|.++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++.+
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 88876554 3332 22 88888888888888875 4788889999999998887776 577889999999999999888
Q ss_pred hhhCCCCCcCEEEccCCCCccchh
Q 037332 904 QDIGSVFALEKIDLSGNNFETLPA 927 (1007)
Q Consensus 904 ~~l~~l~~L~~L~L~~n~l~~lp~ 927 (1007)
..+..+++|+.|++++|.+...|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HHhccCCCCCEEeCCCCcccCCcc
Confidence 667888999999999998876653
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3e-14 Score=158.27 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=71.9
Q ss_pred CceeccCcccccccchh-hh-cCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccCh-hhhcCCCCCEEEec
Q 037332 796 LSYMDLSWTKIKELKSS-ID-HLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPA-SIAHLNEVKSLSFA 872 (1007)
Q Consensus 796 L~~L~l~~n~l~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~ 872 (1007)
++.|+|++|.++.++.. +. .+++|+.|++++|.+....+..+..+++|+.|++++|.++.++. .+..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444443322 22 44444444444444443333444445555555555555544432 24445555555555
Q ss_pred CCCCCcC-CcccCCCCCCCEEeccCCCCCCCchhh----CCCCCcCEEEccCCCCccchh-hhcCCCC--CCEEeeecCC
Q 037332 873 GCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQDI----GSVFALEKIDLSGNNFETLPA-SMKQLSR--LRYLYLINCY 944 (1007)
Q Consensus 873 ~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~n~l~~lp~-~~~~l~~--L~~L~L~~n~ 944 (1007)
+|.+..+ +..+.++++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+|+.+|. .+..++. |+.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 5554433 334555555555555555555554443 345555555555555555542 3444444 2555555555
Q ss_pred C
Q 037332 945 M 945 (1007)
Q Consensus 945 ~ 945 (1007)
+
T Consensus 201 ~ 201 (361)
T 2xot_A 201 L 201 (361)
T ss_dssp E
T ss_pred c
Confidence 4
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=8.9e-14 Score=158.13 Aligned_cols=280 Identities=13% Similarity=0.009 Sum_probs=164.5
Q ss_pred CCCCccchhhHHHHHHHHh-cc--CC--CCeEEEEE--EecCCCcHHHHHHHHHHhhhcc-----cCceEEEEecchhhh
Q 037332 191 DSDGLVGLNSRVEQIKSLL-CI--GL--PVFRIVGI--WGMGGIGKTTIAGAIFNQNFRE-----FEGKCFVANVREESE 258 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~ 258 (1007)
.+..++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||+++++..... +...+.+.++..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 3478999999999999988 42 11 23456666 9999999999999999987553 233333332221
Q ss_pred ccCcHHHHHHHHHHHHhcccccc--cCcchHHHHHHHhC--CCcEEEEEecCCCch--------hhHHHhcCCCCC---C
Q 037332 259 KEGVLVRLRERILSEILDENIKI--RTPNLSECIKKRLR--QMDVFIVLDDVNKVG--------QLDYLAGGLDQF---G 323 (1007)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--------~~~~l~~~~~~~---~ 323 (1007)
... ...+...++..+....... ...+....+.+.+. +++++|||||++... .+..+...+... +
T Consensus 97 ~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 97 APN-LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp CCS-HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCC-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 122 5667777777665432211 11233455555554 679999999997643 233332222111 2
Q ss_pred --CCCeEEEEeCChhhHhhc---------CcccEEEcCCCChhHHHHHHhhhh---cCCCCCChhHHHHHHHHHHHhC--
Q 037332 324 --PGSKIIVTTRDKRVLDNF---------GVSNIYKVNGLENHEAFKLFCYYA---FKGNHGPEDLLVLSERVLYYAN-- 387 (1007)
Q Consensus 324 --~gs~iliTtR~~~v~~~~---------~~~~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~-- 387 (1007)
....||+||+...+.... .....+++++|+.++++++|..++ +.... ...+.+..+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV---WEPRHLELISDVYGED 252 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHh
Confidence 334478788766532111 112349999999999999997653 32211 12456788899999
Q ss_pred ----CCchHHHHHhhhh------cCC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccC----
Q 037332 388 ----GNPLALRVLGSFL------HQK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFK---- 450 (1007)
Q Consensus 388 ----g~PLal~~~~~~l------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~---- 450 (1007)
|.|..+..++... .+. +.+.+..++..... ...+.-.++.||++.+.++..++.+..
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9996555443321 111 23344444332210 233455678899999999998887542
Q ss_pred CCCHHH-------HH-HhhcCCCc----hhHhHHHHhhccCeEEc
Q 037332 451 GEDKDY-------VT-MSQDDPNF----AYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 451 ~~~~~~-------~~-~~~~~~~~----~~~~l~~L~~~~li~~~ 483 (1007)
...... +. ........ ...+++.|++.++|...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 122221 11 12211111 45778999999999775
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=7.4e-14 Score=143.00 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=86.5
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
+.++++++.+..+|..+. ++|+.|++++|......+..|..+++|+.|++++|......|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777788888887654 677888888776555445567777777777777776666666677777777777777777
Q ss_pred ccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC
Q 037332 806 IKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP 857 (1007)
Q Consensus 806 l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 857 (1007)
++.+|.. +..+++|+.|++++|...+..|..+..+++|+.|++++|.++.++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 7766643 456666666666666655555555555555555555555555444
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=4e-14 Score=157.31 Aligned_cols=177 Identities=22% Similarity=0.232 Sum_probs=99.4
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhh-ccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSIC-KLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
+.++++++.+..+|..+. ..++.|+|++|......+..+. .+++|+.|++++|......+..+..+++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466777777777776543 3466777777654444444444 5666666666665555444455566666666666666
Q ss_pred cccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCccc
Q 037332 805 KIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLL 883 (1007)
Q Consensus 805 ~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 883 (1007)
.++.++. .+..+++|+.|+|++|.+....|..+..+++|+.|++++|.++.+|..+.. .+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------------------~~ 159 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK-------------------DG 159 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc-------------------Cc
Confidence 6655443 345555555555555554444444444455555555555544444432200 00
Q ss_pred CCCCCCCEEeccCCCCCCCch-hhCCCCC--cCEEEccCCCCc
Q 037332 884 SGLCSLTELDLKDCGIREIPQ-DIGSVFA--LEKIDLSGNNFE 923 (1007)
Q Consensus 884 ~~l~~L~~L~L~~n~l~~lp~-~l~~l~~--L~~L~L~~n~l~ 923 (1007)
..+++|+.|+|++|+++.+|. .+..++. |+.|+|++|.+.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 456677777777777776653 4555555 367777777665
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.3e-13 Score=140.42 Aligned_cols=130 Identities=22% Similarity=0.276 Sum_probs=90.0
Q ss_pred CCCceeccCccccccc-chhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChh-hhcCCCCCEEEe
Q 037332 794 ERLSYMDLSWTKIKEL-KSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPAS-IAHLNEVKSLSF 871 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l 871 (1007)
++|+.|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++.. +..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5566666666666654 34555666666666666655443344556677777777777777766543 466777777777
Q ss_pred cCCCCCcCCcccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccCCCCc
Q 037332 872 AGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 872 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 923 (1007)
++|.+..+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777777777778888888888888887764 4677888888888888776
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=2.1e-13 Score=139.58 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=79.3
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccch-hhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLS-TSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
+.++++++.++.+|..+. ..++.|++++|......+ ..+..+++|+.|++++|...+..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 366777777777776543 334566666654433322 22445555555555554444333334444444444444444
Q ss_pred cccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCCCcC-Ccc
Q 037332 805 KIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVL-PTL 882 (1007)
Q Consensus 805 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~ 882 (1007)
.++ +..+..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+ |..
T Consensus 92 ~l~-----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 92 RLE-----------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CCC-----------------------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred ccC-----------------------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 444 33344444555555555555555544 33445555555555555554444 445
Q ss_pred cCCCCCCCEEeccCCCCC
Q 037332 883 LSGLCSLTELDLKDCGIR 900 (1007)
Q Consensus 883 ~~~l~~L~~L~L~~n~l~ 900 (1007)
+..+++|+.|+|++|.+.
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 666667777777777654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=9.6e-15 Score=176.74 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=118.6
Q ss_pred CccceEEecCCCCCcccccccccCCCCce-----eccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCC
Q 037332 770 RSLYWLYLNNCSKLESFPEILEKMERLSY-----MDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLV 844 (1007)
Q Consensus 770 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~-----L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 844 (1007)
+.++.|++.++.... .+..+.....|.. +++..|.+...+..+..+++|+.|+|++|... .+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 457778887755443 3333322223333 33334555555677889999999999998865 6777788999999
Q ss_pred EEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCCcCEEEccCCCCc-
Q 037332 845 YIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFALEKIDLSGNNFE- 923 (1007)
Q Consensus 845 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~- 923 (1007)
.|+|++|.++.+|..+..+++|++|+|++|.+..+|..+.++++|++|+|++|.++.+|..++.+++|+.|+|++|.|+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred cchhhhcCCC-CCCEEeeecCCCCCcCCCCcccccccccccc
Q 037332 924 TLPASMKQLS-RLRYLYLINCYMLQTLPELPLRLKLLEARNC 964 (1007)
Q Consensus 924 ~lp~~~~~l~-~L~~L~L~~n~~l~~~p~~~~~L~~L~~~~c 964 (1007)
.+|..+..+. .+..|+|++|.+.+.+|. .|+.|++.++
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 4555554332 223478999998887775 4455555544
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=9.9e-14 Score=135.69 Aligned_cols=128 Identities=21% Similarity=0.290 Sum_probs=82.2
Q ss_pred CCCCEEeccCCCCC-ccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCc-CCcccCCCCCCCEEec
Q 037332 817 ERLRNLKLRECSKL-VSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLV-LPTLLSGLCSLTELDL 894 (1007)
Q Consensus 817 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~L 894 (1007)
++|+.|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45555555555543 34555555556666666666665555 445566666666666666554 4555555677777777
Q ss_pred cCCCCCCCc--hhhCCCCCcCEEEccCCCCccchh----hhcCCCCCCEEeeecCCC
Q 037332 895 KDCGIREIP--QDIGSVFALEKIDLSGNNFETLPA----SMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 895 ~~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~~~~l~~L~~L~L~~n~~ 945 (1007)
++|.++.+| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777665 566777777777777777776665 567777777777777754
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.1e-13 Score=135.45 Aligned_cols=133 Identities=19% Similarity=0.201 Sum_probs=93.9
Q ss_pred CCCceeccCccccc--ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc-cChhhhcCCCCCEEE
Q 037332 794 ERLSYMDLSWTKIK--ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ-VPASIAHLNEVKSLS 870 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~ 870 (1007)
++|+.|++++|.+. .+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.+.. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 5555555666666666666654433 556667777777777777776 566666678888888
Q ss_pred ecCCCCCcCC--cccCCCCCCCEEeccCCCCCCCch----hhCCCCCcCEEEccCCCCccchhh
Q 037332 871 FAGCRNLVLP--TLLSGLCSLTELDLKDCGIREIPQ----DIGSVFALEKIDLSGNNFETLPAS 928 (1007)
Q Consensus 871 l~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~n~l~~lp~~ 928 (1007)
+++|.+..++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888776665 567788888888888888887765 678888888888888888877754
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=8.8e-12 Score=140.08 Aligned_cols=274 Identities=15% Similarity=0.057 Sum_probs=168.3
Q ss_pred CCccchhhHHHHHHHHhcc--CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc------c-CceEEEEecchhhhccCcH
Q 037332 193 DGLVGLNSRVEQIKSLLCI--GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE------F-EGKCFVANVREESEKEGVL 263 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~~~ 263 (1007)
+.++||+++++++.+++.. .....+.+.|+|++|+||||+|+++++.+... + ...+++.++.... .. .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG--GT-P 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC--SC-H
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC--CC-H
Confidence 6899999999999987754 23345689999999999999999999986443 2 3333333332211 02 5
Q ss_pred HHHHHHHHHHHhccccccc---CcchHHHHHHHhCCCcEEEEEecCCCchh-------hHHHhcCCCCCCCCCeEEEEeC
Q 037332 264 VRLRERILSEILDENIKIR---TPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------LDYLAGGLDQFGPGSKIIVTTR 333 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~---~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iliTtR 333 (1007)
..+...+..++.+...... ..+....+.+.+..++.+|||||++.... +..+.... .+..||+||+
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 5566666666643322111 13345667777777667999999976432 33333322 6778999998
Q ss_pred ChhhHhh------cCcccEEEcCCCChhHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhC---CCch-HHHHHhhhh
Q 037332 334 DKRVLDN------FGVSNIYKVNGLENHEAFKLFCYYAF---KGNHGPEDLLVLSERVLYYAN---GNPL-ALRVLGSFL 400 (1007)
Q Consensus 334 ~~~v~~~------~~~~~~~~l~~L~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~l 400 (1007)
....... ......+++++++.++..+++..++. ...... .+....+++.++ |.|. |+..+....
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 7632111 11124899999999999999998752 222222 234566777777 8876 333332221
Q ss_pred --c-C---CCHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccC-CCCHHHHHHhhcCCC---c----
Q 037332 401 --H-Q---KNKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFK-GEDKDYVTMSQDDPN---F---- 466 (1007)
Q Consensus 401 --~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~~~~~~~~~~~~~---~---- 466 (1007)
. + -+.+.+..++..... ..+..+++.|+++++..+..++.... +...+....+....| .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 1 1 256677777665432 34666778899888888777776111 111112222221111 1
Q ss_pred hhHhHHHHhhccCeEEc
Q 037332 467 AYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 467 ~~~~l~~L~~~~li~~~ 483 (1007)
...++..|.++++|...
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 56678889999999764
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.1e-14 Score=173.77 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=58.5
Q ss_pred ceEEEeeCCccccccccccccccccEEecCCc----cccccchhhhhccCccceEEecCCCCCcccccccccCCCCceec
Q 037332 725 IIVLDLRDSAIEEVPSSIESLTTLVKLDLSYC----TRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMD 800 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~----~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 800 (1007)
++.|+|.++.+...+..+.....|..+.|... +.....+..+..++.|+.|+|++|... .+|..+..+++|++|+
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY 253 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE
Confidence 45566666666665554433333333333221 112233444555556666666555433 4444444555666666
Q ss_pred cCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCC
Q 037332 801 LSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 801 l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
|++|.++.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+
T Consensus 254 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred eeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 666655555555555555555555555544 445555555555555555555555555555555555555555543
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.6e-13 Score=131.24 Aligned_cols=125 Identities=21% Similarity=0.298 Sum_probs=83.0
Q ss_pred CCCCEEeccCCCCC-ccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCc-CCcccCCCCCCCEEec
Q 037332 817 ERLRNLKLRECSKL-VSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLV-LPTLLSGLCSLTELDL 894 (1007)
Q Consensus 817 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~L 894 (1007)
++|+.|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666554 45555556666666666666666655 455666666777776666555 5555556777777777
Q ss_pred cCCCCCCCc--hhhCCCCCcCEEEccCCCCccchh----hhcCCCCCCEEeeec
Q 037332 895 KDCGIREIP--QDIGSVFALEKIDLSGNNFETLPA----SMKQLSRLRYLYLIN 942 (1007)
Q Consensus 895 ~~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~~~~l~~L~~L~L~~ 942 (1007)
++|.++.+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777654 667777778888888777776654 567777788777653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.6e-13 Score=130.34 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=66.8
Q ss_pred ccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEE
Q 037332 791 EKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLS 870 (1007)
Q Consensus 791 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 870 (1007)
.++++|+.|++++|.++.++......++|+.|++++|...+. ..+..+++|+.|++++|.++.+|..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~---------- 83 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL---------- 83 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH----------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch----------
Confidence 344455555555555554433222223555555555543332 33444445555555555444443222
Q ss_pred ecCCCCCcCCcccCCCCCCCEEeccCCCCCCCch--hhCCCCCcCEEEccCCCCccchhh----hcCCCCCCEEeeecCC
Q 037332 871 FAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQ--DIGSVFALEKIDLSGNNFETLPAS----MKQLSRLRYLYLINCY 944 (1007)
Q Consensus 871 l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~----~~~l~~L~~L~L~~n~ 944 (1007)
+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 84 ------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 ------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 2445555555555555555554 455566666666666666555543 5566666666666654
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=8e-13 Score=126.25 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=78.1
Q ss_pred CCCceeccCccccc--ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcc-cChhhhcCCCCCEEE
Q 037332 794 ERLSYMDLSWTKIK--ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQ-VPASIAHLNEVKSLS 870 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~ 870 (1007)
++|+.|++++|.+. .+|..+..+++|+.|++++|..... ..++.+++|+.|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34445555555444 4444445555555555555544333 455566666666666666665 555555677777777
Q ss_pred ecCCCCCcCC--cccCCCCCCCEEeccCCCCCCCch----hhCCCCCcCEEEccC
Q 037332 871 FAGCRNLVLP--TLLSGLCSLTELDLKDCGIREIPQ----DIGSVFALEKIDLSG 919 (1007)
Q Consensus 871 l~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~ 919 (1007)
+++|....++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777766543 566777888888888888777664 567788888887753
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.1e-12 Score=129.23 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=99.5
Q ss_pred cCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhh-CCCCCcCEE
Q 037332 837 LGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDI-GSVFALEKI 915 (1007)
Q Consensus 837 l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L 915 (1007)
+.++++|+.|++++|.++.++......++|+.|++++|.+..+ ..+..+++|+.|+|++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4556777778888887777755333345899999999887776 56888999999999999999988655 889999999
Q ss_pred EccCCCCccchh--hhcCCCCCCEEeeecCCCCCcCCCC----c---ccccccccccc
Q 037332 916 DLSGNNFETLPA--SMKQLSRLRYLYLINCYMLQTLPEL----P---LRLKLLEARNC 964 (1007)
Q Consensus 916 ~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~l~~~p~~----~---~~L~~L~~~~c 964 (1007)
++++|.++.+|. .+..+++|+.|++++|++. .+|.. + ++|+.|++.++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999987 7899999999999999876 45542 3 44555555444
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=8.7e-12 Score=140.29 Aligned_cols=283 Identities=16% Similarity=0.075 Sum_probs=162.6
Q ss_pred CCCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc--CceEEEEecchhhhccCcHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF--EGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
..++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+ ...+++.++... .. ...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~---~~-~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI---DT-PYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH---CS-HHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC---CC-HHH
Confidence 34578999999999999988642 34456899999999999999999999876654 233333332221 12 445
Q ss_pred HHHHHHHHHhccccccc--CcchHHHHHHHhC--CCcEEEEEecCCCc------hhhHHHhcCCCC-CCCCCeEEEEeCC
Q 037332 266 LRERILSEILDENIKIR--TPNLSECIKKRLR--QMDVFIVLDDVNKV------GQLDYLAGGLDQ-FGPGSKIIVTTRD 334 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~--~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~iliTtR~ 334 (1007)
+...+...+........ ..+....+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 55555544432211110 1223344555553 45899999998653 234444322211 1345667888886
Q ss_pred hhhHhhcC-------cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhC---CCchHHHHH-hhhhc--
Q 037332 335 KRVLDNFG-------VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYAN---GNPLALRVL-GSFLH-- 401 (1007)
Q Consensus 335 ~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---g~PLal~~~-~~~l~-- 401 (1007)
........ ....+++++++.++..+++..++...........+....+++.++ |.|..+..+ .....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64322211 125899999999999999987642111111122345666777777 999743332 22211
Q ss_pred ---CC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccC-CC-C--HH-------HHHHhhcCC
Q 037332 402 ---QK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFK-GE-D--KD-------YVTMSQDDP 464 (1007)
Q Consensus 402 ---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~-~--~~-------~~~~~~~~~ 464 (1007)
+. +.+.+..++.... ...+.-.+..+++..+..+..++.+.+ +. . .. .+.......
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 11 4555665555432 234566678899888888877775332 21 1 21 112222111
Q ss_pred C----chhHhHHHHhhccCeEEc
Q 037332 465 N----FAYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 465 ~----~~~~~l~~L~~~~li~~~ 483 (1007)
. -...+++.|.+.++|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 155678889999998764
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6.2e-12 Score=125.61 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCEEEeccccCcccChh--hhcCCCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEc
Q 037332 842 SLVYIEAERSAISQVPAS--IAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDL 917 (1007)
Q Consensus 842 ~L~~L~l~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 917 (1007)
+|+.|++++|.++.++.. +..+++|++|++++|.+..+ |..+.++++|++|+|++|+++.++. .+..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555555432 55666666666666665544 4566677777777777777776543 3667777777777
Q ss_pred cCCCCccc-hhhhcCCCCCCEEeeecCCCCCcCC
Q 037332 918 SGNNFETL-PASMKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 918 ~~n~l~~l-p~~~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
++|+++.+ |..+..+++|++|+|++|++....+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777744 5567777778888888877766544
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=1.2e-11 Score=139.17 Aligned_cols=278 Identities=15% Similarity=0.057 Sum_probs=162.7
Q ss_pred CCCCccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-----CceEEEEecchhhhccCcH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-----EGKCFVANVREESEKEGVL 263 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 263 (1007)
.++.++||+.+++++.+++... ....+.+.|+|++|+||||+|+++++.....+ ...+.+.++... .. .
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~-~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR---ET-P 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS---CS-H
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC---CC-H
Confidence 3478999999999999988542 34456899999999999999999999764432 333333332221 12 4
Q ss_pred HHHHHHHHHHHhccccccc--CcchHHHHHHHh--CCCcEEEEEecCCCchh-------hHHHhcCCCCC--CCCCeEEE
Q 037332 264 VRLRERILSEILDENIKIR--TPNLSECIKKRL--RQMDVFIVLDDVNKVGQ-------LDYLAGGLDQF--GPGSKIIV 330 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~--~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~ili 330 (1007)
..+...+...+........ ..+....+.+.+ .+++.+|||||++.... +..+....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 5566666666643221111 123345555555 35688999999976542 22222221111 34667888
Q ss_pred EeCChhh--------HhhcCcccEEEcCCCChhHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhC---CCch-HHHH
Q 037332 331 TTRDKRV--------LDNFGVSNIYKVNGLENHEAFKLFCYYAF---KGNHGPEDLLVLSERVLYYAN---GNPL-ALRV 395 (1007)
Q Consensus 331 TtR~~~v--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~ 395 (1007)
||+.... ...++ ...+.+++++.++..+++..++. ...... .+....++++++ |.|- ++..
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 8876532 11111 14789999999999999988742 222212 234567777777 9993 3333
Q ss_pred Hhhhh---c--CC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccCCCC---HH----HHHHh
Q 037332 396 LGSFL---H--QK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGED---KD----YVTMS 460 (1007)
Q Consensus 396 ~~~~l---~--~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~~~~~ 460 (1007)
+.... . +. +.+.+..++.... ...+.-++..|+++.+..+..++....+.. .. .....
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22221 1 21 4566666665542 234556678899998888777774433322 12 11111
Q ss_pred hcCCCc-------hhHhHHHHhhccCeEEc
Q 037332 461 QDDPNF-------AYYVLNVLVDKSLVTIS 483 (1007)
Q Consensus 461 ~~~~~~-------~~~~l~~L~~~~li~~~ 483 (1007)
....|. ...+++.|...|++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 111111 55677888888888764
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=2.7e-11 Score=136.39 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=173.3
Q ss_pred CCCCccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
.++.++||+.+++++.+++.. ..+..+.+.|+|++|+||||+|++++..........+.+.++.. ... ...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---~~~-~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---YRN-FTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---CCS-HHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---CCC-HHHH
Confidence 347899999999999998864 22233489999999999999999999987654322222222221 122 4456
Q ss_pred HHHHHHHHhcccccc--cCcchHHHHHHHh--CCCcEEEEEecCCCc--hhhHHHhcCCCCCC----CCCeEEEEeCChh
Q 037332 267 RERILSEILDENIKI--RTPNLSECIKKRL--RQMDVFIVLDDVNKV--GQLDYLAGGLDQFG----PGSKIIVTTRDKR 336 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~--~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~iliTtR~~~ 336 (1007)
...+...+....... ...+....+.+.+ .+++.+||||+++.. +.+..+...+.... .+..||++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 666665554321111 1122334444444 356889999999765 33555544443211 4667888887764
Q ss_pred hHhhcC-------cccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHh---------CCCchHHHHHhhh-
Q 037332 337 VLDNFG-------VSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYA---------NGNPLALRVLGSF- 399 (1007)
Q Consensus 337 v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~~~~- 399 (1007)
...... ....+.+++++.++..+++...+........-..+....+++.+ +|.|-.+..+...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 433221 11379999999999999998775320001112245677888888 7887544333222
Q ss_pred hc-----CC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhccc---CC--CCHHHHHH----h--
Q 037332 400 LH-----QK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFF---KG--EDKDYVTM----S-- 460 (1007)
Q Consensus 400 l~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~~~~----~-- 460 (1007)
.. +. +.+....+..... ...+ .-.+..|+++.+.++..++.+. .+ .....+.. .
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~---~~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL---FGIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS---CCCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh---hhhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 21 3333444333322 2222 2335678888888877777654 22 12222211 1
Q ss_pred -hcCCCc----hhHhHHHHhhccCeEEccC-------CeE-------ehhHHHHHHHHHHHhhh
Q 037332 461 -QDDPNF----AYYVLNVLVDKSLVTISCF-------NKL-------QMHDLLQEMGQEIVRQE 505 (1007)
Q Consensus 461 -~~~~~~----~~~~l~~L~~~~li~~~~~-------~~~-------~mH~lv~~~~~~~~~~e 505 (1007)
...... ...++..|.++++|..... +++ ..|++++.+...+..+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 111111 5578899999999987533 221 25566666665555443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=1.2e-13 Score=139.21 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=88.2
Q ss_pred ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCC
Q 037332 808 ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLC 887 (1007)
Q Consensus 808 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 887 (1007)
.+|..+..+++|++|++++|.... +| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+| .+..++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 344456666666666666655433 44 566666667777777766666666666677777777777766655 356667
Q ss_pred CCCEEeccCCCCCCCch--hhCCCCCcCEEEccCCCCccc-hh----------hhcCCCCCCEEeeecCCC
Q 037332 888 SLTELDLKDCGIREIPQ--DIGSVFALEKIDLSGNNFETL-PA----------SMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 888 ~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~l-p~----------~~~~l~~L~~L~L~~n~~ 945 (1007)
+|+.|++++|.++.++. .+..+++|++|++++|.+... |. .+..+++|+.|+ +|+.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 77888888887777654 677788888888888877643 21 267788888776 4443
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.7e-11 Score=120.81 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=77.1
Q ss_pred CCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEcc
Q 037332 841 KSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLS 918 (1007)
Q Consensus 841 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 918 (1007)
++|+.|++++|.++.+|..+..+++|+.|++++|.+..++. .+.++++|+.|+|++|.++.++. .+..+++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35666666666666666666677777777777777665543 56777888888888888887654 57778888888888
Q ss_pred CCCCccchhh-hcCCCCCCEEeeecCCCCC
Q 037332 919 GNNFETLPAS-MKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 919 ~n~l~~lp~~-~~~l~~L~~L~L~~n~~l~ 947 (1007)
+|.++.+|.. +..+++|+.|+|++|++..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888877653 6778888888888887654
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=123.18 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchh-hhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLST-SICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
+.++++++.++.+|..+.. +|+.|++++|......+. .+..+++|++|++++|...+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5778888888888876543 788888888755444332 3677788888888887777666777777777888888777
Q ss_pred cccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCc
Q 037332 805 KIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS 854 (1007)
Q Consensus 805 ~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 854 (1007)
.++.++. .+..+++|++|++++|...+..|..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7776654 3667777777777777776666667777777777777777665
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=8.8e-12 Score=136.52 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=88.0
Q ss_pred cccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcccc----cccc-hhhhcCCCC
Q 037332 745 LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTKI----KELK-SSIDHLERL 819 (1007)
Q Consensus 745 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l----~~l~-~~~~~l~~L 819 (1007)
+++|+.|+|.+ .....-+..|.+|++|+.|++.++......+..|..+.++..+.+..+.. ..+. ..+..+.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66777777766 33333334466677777777766655544455565555555555544211 1111 123334444
Q ss_pred C-EEeccCCCCCcc-CCcccCCCCCCCEEEeccccCcccChhh-hcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEecc
Q 037332 820 R-NLKLRECSKLVS-LPENLGSLKSLVYIEAERSAISQVPASI-AHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLK 895 (1007)
Q Consensus 820 ~-~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~ 895 (1007)
+ .+.+.....+.. +........++..+.+.++-...-...+ ..+++|+.|++++|....+|. .|.++.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 233322111100 0000011223333333332111000011 124555555555555444443 35555555555555
Q ss_pred CCCCCCCch-hhCCCCCcC-EEEccCCCCccch-hhhcCCCCCCEEeeecCC
Q 037332 896 DCGIREIPQ-DIGSVFALE-KIDLSGNNFETLP-ASMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 896 ~n~l~~lp~-~l~~l~~L~-~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~ 944 (1007)
+| +..++. .|.++++|+ .|++.+ +++.++ ..|.+|++|+.|++++|.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 54 444432 345555555 555554 454443 335555555555555543
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=6.5e-14 Score=141.06 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=105.7
Q ss_pred cCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEeccCCCCCCCchhhCCCCC
Q 037332 832 SLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIPQDIGSVFA 911 (1007)
Q Consensus 832 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 911 (1007)
.+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|+++.+| .+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34448899999999999999999998 889999999999999998888887777899999999999999987 6888999
Q ss_pred cCEEEccCCCCccchh--hhcCCCCCCEEeeecCCCCCcCCC
Q 037332 912 LEKIDLSGNNFETLPA--SMKQLSRLRYLYLINCYMLQTLPE 951 (1007)
Q Consensus 912 L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~~l~~~p~ 951 (1007)
|+.|++++|+++.+|. .+..+++|++|++++|++.+.+|.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999999999998775 689999999999999988766553
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=9.1e-11 Score=115.54 Aligned_cols=90 Identities=21% Similarity=0.383 Sum_probs=53.2
Q ss_pred hcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccchhh-hcCCCCCCE
Q 037332 861 AHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLPAS-MKQLSRLRY 937 (1007)
Q Consensus 861 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~ 937 (1007)
..+++|++|++++|.+..++. .+.++++|+.|+|++|.++.+|.. +..+++|++|++++|+++.+|.. +..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 344444444444444444333 245566666666666666665543 45667777777777777666554 356677777
Q ss_pred EeeecCCCCCcCC
Q 037332 938 LYLINCYMLQTLP 950 (1007)
Q Consensus 938 L~L~~n~~l~~~p 950 (1007)
|++++|++.+..|
T Consensus 129 L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 129 IWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEecCCCeeccCc
Confidence 7777776665443
No 153
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=5.5e-11 Score=118.61 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=71.6
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
+.++++++.+..+|..+. ++|+.|++++|.. ..+|..+..+++|+.|++++|......+..|..+++|+.|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 356777777777776543 4677777776543 3455556666666666666665555444555666666666666666
Q ss_pred ccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCc
Q 037332 806 IKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS 854 (1007)
Q Consensus 806 l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 854 (1007)
++.++. .+..+++|+.|++++|......+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 655443 3455555555555555444333334444555555555554443
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=3.9e-11 Score=131.33 Aligned_cols=234 Identities=18% Similarity=0.127 Sum_probs=136.9
Q ss_pred CcceEEEeeCCccccccccccc-cccccEEecCCccccccchhhhhccCccceEEecCCCCCccccccccc--------C
Q 037332 723 GNIIVLDLRDSAIEEVPSSIES-LTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEK--------M 793 (1007)
Q Consensus 723 ~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------l 793 (1007)
.+++.|.++++--..-...+.. +++|+.|+|++|..... ...-+.++.+..+.+..+ ......|.+ +
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe-cCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 3566777765311100011222 66777888877665411 000111222333333332 112234556 8
Q ss_pred CCCceeccCcccccccch-hhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccC----ccc-ChhhhcCCCCC
Q 037332 794 ERLSYMDLSWTKIKELKS-SIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAI----SQV-PASIAHLNEVK 867 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l----~~~-~~~~~~l~~L~ 867 (1007)
++|+.|+|.. .++.++. .|.++++|+.|++.+|......+..|.++.++..+....+.. ..+ ...+..+.+|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 8888888887 7777764 577888888888888776665666777766666665544211 111 11122333333
Q ss_pred --------------------------EEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCch-hhCCCCCcCEEEccC
Q 037332 868 --------------------------SLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQ-DIGSVFALEKIDLSG 919 (1007)
Q Consensus 868 --------------------------~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~ 919 (1007)
.+.+.++-...... ....+++|+.|+|++|+++.+|. .|.++++|+.|+|.+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 33333321100000 01137899999999999999976 478999999999999
Q ss_pred CCCccchh-hhcCCCCCC-EEeeecCCCCCcCC-CCcccccccccccc
Q 037332 920 NNFETLPA-SMKQLSRLR-YLYLINCYMLQTLP-ELPLRLKLLEARNC 964 (1007)
Q Consensus 920 n~l~~lp~-~~~~l~~L~-~L~L~~n~~l~~~p-~~~~~L~~L~~~~c 964 (1007)
| ++.++. .|.++++|+ .|++.+ .+..++ ..+..+..|...++
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 8 888875 589999999 999988 345554 55655555544444
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.2e-10 Score=114.73 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=79.2
Q ss_pred eEEEeeCCccccccccccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCccc
Q 037332 726 IVLDLRDSAIEEVPSSIESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWTK 805 (1007)
Q Consensus 726 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 805 (1007)
+.++++++++..+|..+. ++|+.|++++|......+..+..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 467777777777775443 577777777766554444445667777777777765554444455666677777777776
Q ss_pred ccccchh-hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCc
Q 037332 806 IKELKSS-IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAIS 854 (1007)
Q Consensus 806 l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 854 (1007)
++.++.. +..+++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655543 456666666666666554433334455666666666666555
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=3.3e-10 Score=118.40 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=116.9
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+..... . ... .... ..+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~-~~~-------~~~~-~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P-CGV-------CDNC-REI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C-CSC-------SHHH-HHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-Ccc-------cHHH-HHH
Confidence 34579999999999999986543 23488999999999999999999876543321100 0 000 0000 000
Q ss_pred HHHHhccccc--ccCcchHH---HHHHH-----hCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChhhH
Q 037332 271 LSEILDENIK--IRTPNLSE---CIKKR-----LRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKRVL 338 (1007)
Q Consensus 271 ~~~~~~~~~~--~~~~~~~~---~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v~ 338 (1007)
.......... ........ .+.+. ..+++.+||+||++.. +.++.+...+.....+.++|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000000000 00000111 11111 1346799999999653 44566655444445678888888765422
Q ss_pred hh--cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 037332 339 DN--FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSF 399 (1007)
Q Consensus 339 ~~--~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 399 (1007)
.. ......+++++++.++..+++...+...... ...+....+++.++|+|..+..+...
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1223589999999999999998877432221 12355788999999999888766543
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=3.4e-10 Score=110.69 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=81.4
Q ss_pred CEEEeccccCcccChhhhcCCCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCC
Q 037332 844 VYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNN 921 (1007)
Q Consensus 844 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~ 921 (1007)
+.+++++|.++.+|..+. ++|+.|++++|.+..+ |..+.++++|+.|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567778888887776553 7888888888887666 45678888888888888888888765 4788888888888888
Q ss_pred Cccchhh-hcCCCCCCEEeeecCCCCCc
Q 037332 922 FETLPAS-MKQLSRLRYLYLINCYMLQT 948 (1007)
Q Consensus 922 l~~lp~~-~~~l~~L~~L~L~~n~~l~~ 948 (1007)
++.+|.. +..+++|+.|+|++|++...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 8888765 78888888888888876543
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.6e-10 Score=110.10 Aligned_cols=106 Identities=20% Similarity=0.346 Sum_probs=85.6
Q ss_pred CCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCC
Q 037332 843 LVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGN 920 (1007)
Q Consensus 843 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n 920 (1007)
.+.+++++|.++.+|..+ .++|++|++++|.+..+ |..+.++++|+.|+|++|+++.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467788888888887655 37888888888887766 55688889999999999999888765 578899999999999
Q ss_pred CCccchhh-hcCCCCCCEEeeecCCCCCcCC
Q 037332 921 NFETLPAS-MKQLSRLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 921 ~l~~lp~~-~~~l~~L~~L~L~~n~~l~~~p 950 (1007)
+++.+|.. +..+++|+.|+|++|++....+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99888764 7888999999999998766543
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1e-09 Score=112.80 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=113.3
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
....++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++.+... +.......+.. ...+ ...+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 88 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---DERG-IDVVRHK 88 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---CTTC-HHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---cccC-hHHHHHH
Confidence 34579999999999999987543 2348999999999999999999976433 33322222211 1111 2222111
Q ss_pred HHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChhhHh-h-cCccc
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKRVLD-N-FGVSN 345 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~v~~-~-~~~~~ 345 (1007)
+ ........ .-.+++.+||+||++... ..+.+...+.....+.++|+||+...... . .....
T Consensus 89 ~-~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 I-KEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp H-HHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred H-HHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1 11111000 012568899999997653 34445444333456778898887654211 1 11224
Q ss_pred EEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 346 IYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 346 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
.+++.+++.++..+++...+...... ...+....+++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 88999999999999998876422211 12345678889999999865543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.4e-08 Score=113.88 Aligned_cols=125 Identities=11% Similarity=0.112 Sum_probs=69.8
Q ss_pred hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcC-CcccCCCCCCCE
Q 037332 813 IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLTE 891 (1007)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~ 891 (1007)
+..+..|+.+.+..+. .......+..+..++.+....+.+.. ..+..+.+|+.+.+..+ ...+ ...|.++.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 3444555555554321 12223344555555555544432221 23455666666666543 2223 235667777777
Q ss_pred EeccCCCCCCCc-hhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecC
Q 037332 892 LDLKDCGIREIP-QDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINC 943 (1007)
Q Consensus 892 L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n 943 (1007)
++|.++ ++.|. ..+.++.+|+.+.+..+ ++.++. .|.+|++|+.++|..+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 777543 66663 45677778888877655 666643 4677788888877654
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=8.5e-09 Score=115.11 Aligned_cols=212 Identities=11% Similarity=0.119 Sum_probs=121.8
Q ss_pred ceEEEeeCCcccccccc-ccccccccEEecCCccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCc
Q 037332 725 IIVLDLRDSAIEEVPSS-IESLTTLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSW 803 (1007)
Q Consensus 725 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 803 (1007)
|+.+.+..+ +..++.. |.+ .+|+.+.+.+ .....-+..|.++++|+.+++.+|.....-...|. ..+|+.+.+..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 444444433 4444433 333 3566666664 22222234566677777777766543333333343 46677777763
Q ss_pred ccccccc-hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCCC----
Q 037332 804 TKIKELK-SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNL---- 877 (1007)
Q Consensus 804 n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~---- 877 (1007)
+ ++.++ ..+.++++|+.+.+..+ ....-...|.+ .+|+.+.+ .+.++.+ ...|..+++|+.+.+.++...
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 3 55554 35666777777777653 22222234444 56777777 3445555 345667777777777766543
Q ss_pred -cC-CcccCCCCCCCEEeccCCCCCCCc-hhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeecCCCCC
Q 037332 878 -VL-PTLLSGLCSLTELDLKDCGIREIP-QDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 878 -~~-~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~~l~ 947 (1007)
.+ +..|.++++|+.+.|. +.+..++ ..+.++++|+.+.|..| ++.++. .|.++ +|+.|++.+|....
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred cEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 23 3467777788888877 3466664 34567777888887443 666643 46677 78888887775433
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=1e-08 Score=114.52 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=48.9
Q ss_pred CceEEEecCCCCCCCCCC-CCccccceeeCCCCCccccc-cccccccccceeeccCCcCCCCCCCCCCCCCCcEEecccc
Q 037332 588 ELRYFHWHGYPLKTLPFN-FDPENLIELNLPHSKIKQIW-EGKKEAFKLKSIDLRYSQYLTRIPEPSEIPNLEKINLWNC 665 (1007)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 665 (1007)
+|+.+.+..+ ++.++.. |.-.+|+.+.+.. .++.+. ..+..+.+|+.+++.+|.+.......-.+.+|+.+.+..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 3444444332 4444432 2223566666654 455554 3455666666666666554433332222466666666532
Q ss_pred cccCCC-CcccccCCCccEEEecC
Q 037332 666 TNLAYI-PCNIQNFINLGVLCFRG 688 (1007)
Q Consensus 666 ~~~~~l-~~~~~~l~~L~~L~l~~ 688 (1007)
+..+ ...|.++++|+.+.+..
T Consensus 214 --l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 214 --LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp --CCEECTTTTTTCTTCCCEECCT
T ss_pred --hheehhhHhhCCCCCCEEecCC
Confidence 2232 33556666666666643
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=2.5e-09 Score=104.41 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=61.5
Q ss_pred ceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCC
Q 037332 797 SYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRN 876 (1007)
Q Consensus 797 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 876 (1007)
+.+++++|.+..+|..+. ++|+.|++++|.+.+..|..+ ..+++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~-----------------------~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVF-----------------------DHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTT-----------------------TTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHh-----------------------cCCcCCCEEECCCCCC
Confidence 455555555555554332 445555555544444334444 4445555555555554
Q ss_pred CcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEccCCCCccch
Q 037332 877 LVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLSGNNFETLP 926 (1007)
Q Consensus 877 ~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp 926 (1007)
..+|. .+.++++|+.|+|++|+++.+|.. +..+++|+.|+|++|.+...+
T Consensus 70 ~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 44444 245677777777777777777654 677778888888888776444
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=3.1e-09 Score=116.00 Aligned_cols=186 Identities=15% Similarity=0.222 Sum_probs=112.0
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
..+.++|++..++.+.+++..+.. +.+.|+|++|+||||+|+.+++.+... +...+...+. +...+ ...+ +.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~-~~~i-~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRG-IDVV-RN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCS-HHHH-HT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccC-hHHH-HH
Confidence 345799999999999999875432 238899999999999999999986432 2222222221 11111 2221 11
Q ss_pred HHHHHhcccccccCcchHHHHHHHh-CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChhhH-hh-cCcc
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRL-RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKRVL-DN-FGVS 344 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~v~-~~-~~~~ 344 (1007)
+...+..... .+ .+++.++|+||++... .++.+...+.....++++|+||+...-. .. ....
T Consensus 92 ~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 92 QIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 1111110000 01 3458899999997643 3333433333334677888888765321 11 1223
Q ss_pred cEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHHhh
Q 037332 345 NIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVLGS 398 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 398 (1007)
..+++.+++.++..+++...+...... ...+.+..+++.++|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 589999999999999998876322111 123556789999999995 4444433
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=127.91 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCCceeccCcccccc--cchhhhcCCCCCEEeccCCCCCccCCcc----c-CCCCCCCEEEeccccCcc-----cChhhh
Q 037332 794 ERLSYMDLSWTKIKE--LKSSIDHLERLRNLKLRECSKLVSLPEN----L-GSLKSLVYIEAERSAISQ-----VPASIA 861 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~----l-~~l~~L~~L~l~~~~l~~-----~~~~~~ 861 (1007)
++|+.|+|++|.+.. +......+++|++|++++|......... + ...++|+.|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555441 1112223345555555555443211111 1 234556666666665542 333445
Q ss_pred cCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCc
Q 037332 862 HLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 862 ~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
..++|++|+|++|.+.. ++..+...++|+.|+|++|.+++ ++..+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 56666666666666432 23344555677777777777764 3444556677788888877776
No 166
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=4.8e-09 Score=102.10 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=49.7
Q ss_pred CCCEEEeccccCccc-ChhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCCCCCCchh-hCCCCCcCEEEcc
Q 037332 842 SLVYIEAERSAISQV-PASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCGIREIPQD-IGSVFALEKIDLS 918 (1007)
Q Consensus 842 ~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~ 918 (1007)
+|+.|++++|.++.+ |..+..+++|++|++++|.+..+|. .+.++++|+.|+|++|+++.+|.. +..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 344444444444433 2334445555555555555444443 346677777788888877777653 6778888888888
Q ss_pred CCCCc
Q 037332 919 GNNFE 923 (1007)
Q Consensus 919 ~n~l~ 923 (1007)
+|.++
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 88776
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.85 E-value=2.3e-07 Score=104.04 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred cccCCCCceeccCcccccccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEE
Q 037332 790 LEKMERLSYMDLSWTKIKELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSL 869 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L 869 (1007)
+.++..|+.+.+..+.. .+........+|+.+.+... ....-...+..+..|+.+.+..+...--...+..+..|+.+
T Consensus 204 F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 204 FAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEE
T ss_pred hccccccceeecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecccccccccccee
Confidence 44444444444433221 12222233345555555332 11112234455566666665554332223334455555555
Q ss_pred EecCCCCCcCCcccCCCCCCCEEeccCCCCCCCc-hhhCCCCCcCEEEccCCCCccch-hhhcCCCCCCEEeeecC
Q 037332 870 SFAGCRNLVLPTLLSGLCSLTELDLKDCGIREIP-QDIGSVFALEKIDLSGNNFETLP-ASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 870 ~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n 943 (1007)
.+..... ....+.++.+|+.+.+.++ +..++ ..+.++.+|+.++|.. +++.++ ..|.++.+|+.+.|..+
T Consensus 282 ~~~~~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 282 IYGSVIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EECSSEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT
T ss_pred ccCceee--ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc
Confidence 5543321 1123455566666666543 44443 2345566666666643 355553 23556666666666443
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=2.5e-08 Score=108.99 Aligned_cols=186 Identities=18% Similarity=0.190 Sum_probs=112.4
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
...+.++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++.+... +...+...+......... +.....
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVK 98 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHH
Confidence 345679999999999999987643 2348999999999999999999986433 221122222111100000 111111
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChhhH-hh-cCcc
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKRVL-DN-FGVS 344 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v~-~~-~~~~ 344 (1007)
.+. ... ....+++.++|+||++.. +..+.+...+.....++++|+||....-. .. ....
T Consensus 99 ~~~----~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 99 EFA----RTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHH----HSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHH----hhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 110 000 001256789999999765 34555554444345677888888765321 11 1112
Q ss_pred cEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 345 NIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
..+++.+++.++..+++...+..... ....+....+++.++|.|..+..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 47899999999999999877643221 1224566788899999997655443
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=4.3e-10 Score=124.33 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=112.5
Q ss_pred CCCceeccCcccccc-----cchhhh-cCCCCCEEeccCCCCCccCC-cccCCCCCCCEEEeccccCcccC-----hhh-
Q 037332 794 ERLSYMDLSWTKIKE-----LKSSID-HLERLRNLKLRECSKLVSLP-ENLGSLKSLVYIEAERSAISQVP-----ASI- 860 (1007)
Q Consensus 794 ~~L~~L~l~~n~l~~-----l~~~~~-~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~-----~~~- 860 (1007)
++|+.|++++|.++. +...+. ..++|++|+|++|....... .....+++|+.|++++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666652 222233 33799999999998654322 22334568999999999987432 222
Q ss_pred hcCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCcc-----c
Q 037332 861 AHLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFET-----L 925 (1007)
Q Consensus 861 ~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----l 925 (1007)
...++|++|+|++|.+.. ++..+...++|++|+|++|.+++ ++..+..+++|++|+|++|.++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 246899999999998643 34445678899999999999884 45667788899999999999983 4
Q ss_pred hhhhcCCCCCCEEeeecCCCCC
Q 037332 926 PASMKQLSRLRYLYLINCYMLQ 947 (1007)
Q Consensus 926 p~~~~~l~~L~~L~L~~n~~l~ 947 (1007)
+..+..+++|++|+|++|++..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 4556778999999999998654
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=2.3e-07 Score=101.01 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=141.8
Q ss_pred CCCCCccchhhHHHHHHHHhccC---CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIG---LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRL 266 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 266 (1007)
...+.++|++..++++.+++... ....+.|.|+|++|+|||++|+++++.....| .+.+... ... ...+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~---~~~-~~~l 80 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTSGPA---IEK-PGDL 80 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE----EEECTTT---CCS-HHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE----EEEeccc---cCC-hHHH
Confidence 34578999999999988877521 12335788999999999999999998764322 2222111 111 1111
Q ss_pred HHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCC------------------CCCC
Q 037332 267 RERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQF------------------GPGS 326 (1007)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~------------------~~gs 326 (1007)
... +... ..+..+|+||+++.... .+.+...+... .++.
T Consensus 81 ~~~--------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 AAI--------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp HHH--------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred HHH--------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 111 1100 13466899999976542 33332211100 1245
Q ss_pred eEEEEeCChhhHh-hc--CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-
Q 037332 327 KIIVTTRDKRVLD-NF--GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFLHQ- 402 (1007)
Q Consensus 327 ~iliTtR~~~v~~-~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~- 402 (1007)
++|.||....... .. ....++++.+++.+|..+++...+...... -..+....++++++|.|-.+..+...+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6777666443211 11 123589999999999999998876432221 22356788999999999877665444321
Q ss_pred -----C---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccCC--CCHHHHHHhhcCCC-chhHhH
Q 037332 403 -----K---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKG--EDKDYVTMSQDDPN-FAYYVL 471 (1007)
Q Consensus 403 -----~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~~~~~~~-~~~~~l 471 (1007)
. +.+....++..+ ...+..+++.++..+..+.....+ .....+...+.-.- .....+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 1 233344333322 223455667777776655543333 23444433332110 123333
Q ss_pred HH-HhhccCeEEccCCe
Q 037332 472 NV-LVDKSLVTISCFNK 487 (1007)
Q Consensus 472 ~~-L~~~~li~~~~~~~ 487 (1007)
+. +++.+++.....++
T Consensus 286 ~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHHHTTSEEEETTEE
T ss_pred hHHHHHhcchhcCCccc
Confidence 33 78888988765444
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=2.5e-08 Score=109.99 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=54.7
Q ss_pred EeccCCCCCccCCcccCCCCCCCEEEecc-ccCcccC-hhhhcCCCCCEEEecCCCCCcCCc-ccCCCCCCCEEeccCCC
Q 037332 822 LKLRECSKLVSLPENLGSLKSLVYIEAER-SAISQVP-ASIAHLNEVKSLSFAGCRNLVLPT-LLSGLCSLTELDLKDCG 898 (1007)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~ 898 (1007)
++.++++.+..+|. +..+++|+.|+|++ |.++.++ ..|..+++|+.|+|++|.+..++. .|.++++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444423444555 66666666666664 6666554 345556666666666665544433 44555666666666666
Q ss_pred CCCCchhhCCCCCcCEEEccCCCCc
Q 037332 899 IREIPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 899 l~~lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
|+.+|..+....+|+.|+|.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 6655544332223666666665554
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=2.9e-08 Score=108.58 Aligned_cols=136 Identities=18% Similarity=0.295 Sum_probs=92.1
Q ss_pred ccchhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCccc-Chhh--hcCCCCCEEEecCCC---CC----
Q 037332 808 ELKSSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQV-PASI--AHLNEVKSLSFAGCR---NL---- 877 (1007)
Q Consensus 808 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~--~~l~~L~~L~l~~~~---~~---- 877 (1007)
.+...+..+|+|+.|.|++|... .++. + .+++|+.|++..|.+..- ...+ ..+++|+.|+|+.+. ..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 34456677888999988887433 2333 3 378899999988876621 1223 268899999886321 11
Q ss_pred -cCCccc--CCCCCCCEEeccCCCCCC-Cchhh---CCCCCcCEEEccCCCCcc-----chhhhcCCCCCCEEeeecCCC
Q 037332 878 -VLPTLL--SGLCSLTELDLKDCGIRE-IPQDI---GSVFALEKIDLSGNNFET-----LPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 878 -~~~~~~--~~l~~L~~L~L~~n~l~~-lp~~l---~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
.+...+ ..+|+|+.|+|.+|.+.. .+..+ ..+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 111122 358999999999998874 22222 357899999999998873 455567789999999999965
Q ss_pred C
Q 037332 946 L 946 (1007)
Q Consensus 946 l 946 (1007)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.3e-07 Score=100.86 Aligned_cols=182 Identities=13% Similarity=0.119 Sum_probs=110.6
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc-ccCceEEEEecchhhhccCcHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR-EFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
..+.++|++..++.+.+++..+. ...+.++|++|+|||++|+.+++.+.. .+...+...+......... +......
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV-VRHKIKE 91 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT-SSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH-HHHHHHH
Confidence 34569999999999999886543 233889999999999999999997632 2221112222111000000 1111111
Q ss_pred HHHHHhcccccccCcchHHHHHHHh-CCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChhh-Hhh-cCcc
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRL-RQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKRV-LDN-FGVS 344 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~v-~~~-~~~~ 344 (1007)
+.. . ..+ .+++.++|+|+++... ..+.+...+.....+.++|+||....- ... ....
T Consensus 92 ~~~----~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 92 FAR----T--------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp HHH----S--------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred HHh----c--------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 110 0 001 2567899999997543 345566666555567788888866531 111 1223
Q ss_pred cEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 345 NIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
..+++.+++.++..+++...+-..... -..+....+++.++|.+-.+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 589999999999999998776432221 2234567788889999875443
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=3.2e-08 Score=108.28 Aligned_cols=81 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred cCCCCCEEEecCCCCCcC-Cc---ccCCCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCCCCcc-chhhhcC
Q 037332 862 HLNEVKSLSFAGCRNLVL-PT---LLSGLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGNNFET-LPASMKQ 931 (1007)
Q Consensus 862 ~l~~L~~L~l~~~~~~~~-~~---~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-lp~~~~~ 931 (1007)
.+++|+.|.+.+|.+... +. ....+++|++|+|+.|.+++ ++..+..+++|+.|+|++|.++. .-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467777777777764321 11 11356889999999998885 45555678899999999998762 2222322
Q ss_pred -CCCCCEEeeecCC
Q 037332 932 -LSRLRYLYLINCY 944 (1007)
Q Consensus 932 -l~~L~~L~L~~n~ 944 (1007)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 4668888876
No 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.61 E-value=2.7e-07 Score=91.92 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..+.++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467999999999999998653 3456789999999999999999997643
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=4.3e-07 Score=101.12 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=111.2
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
..+.++|++..++.+.+++..+. ..+.+.|+|++|+||||+|+.+++.+....... . ..+.. ... ...+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~-~~~~~-------~~~-~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A-TPCGV-------CDN-CREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S-SCCSS-------SHH-HHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C-CCCcc-------cHH-HHHH
Confidence 34579999999999999886543 235788999999999999999998764322100 0 00000 000 0000
Q ss_pred HHH----Hh--cccccccCcchHHHHHHHh----CCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChhh-
Q 037332 271 LSE----IL--DENIKIRTPNLSECIKKRL----RQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKRV- 337 (1007)
Q Consensus 271 ~~~----~~--~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v- 337 (1007)
... +. ........++....+.... .+++.++|+||++.. +..+.+...+.....+..+|++|....-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00 0000000122222222221 346789999999754 3355555444333456677777765432
Q ss_pred Hhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 338 LDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
... ......+++.+++.++..+++...+-..... ...+.+..+++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 1223689999999999999998765321111 123456788999999998766543
No 177
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1e-07 Score=104.93 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=73.9
Q ss_pred EEEeeCC-ccccccccccccccccEEecCC-ccccccchhhhhccCccceEEecCCCCCcccccccccCCCCceeccCcc
Q 037332 727 VLDLRDS-AIEEVPSSIESLTTLVKLDLSY-CTRLKSLSTSICKLRSLYWLYLNNCSKLESFPEILEKMERLSYMDLSWT 804 (1007)
Q Consensus 727 ~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 804 (1007)
.++++++ .+..+|. +..+++|+.|+|++ |......+..|.+|++|+.|+|++|...+..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 7778888 88888888888886 5544444466778888888888887776666777788888888888888
Q ss_pred cccccchhhhcCCCCCEEeccCCCCC
Q 037332 805 KIKELKSSIDHLERLRNLKLRECSKL 830 (1007)
Q Consensus 805 ~l~~l~~~~~~l~~L~~L~l~~~~~~ 830 (1007)
.+..+|..+.....|+.|+|.+|+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88877654433333777877777654
No 178
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.5e-07 Score=96.03 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=95.1
Q ss_pred CccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------CceEEEEecchhhhccCcHHH
Q 037332 194 GLVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
.+.||++++++|...|... .+....+.|+|++|+|||++|+++++++.... .......+...... ...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t----~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG----MDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC------HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC----HHH
Confidence 3789999999999877542 34567889999999999999999999875432 11122222222111 445
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHH---h---CCCcEEEEEecCCCchhhHHHhcCCCCC-CCCCeE--EEEeCChh
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKR---L---RQMDVFIVLDDVNKVGQLDYLAGGLDQF-GPGSKI--IVTTRDKR 336 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~---l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~-~~gs~i--liTtR~~~ 336 (1007)
+...+..++.+..... ......+.+. + .++++++|||+++...+-+.+...+.|. ...+++ |.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 6666666665542211 1222223222 2 4567999999998764322222211110 123333 33333221
Q ss_pred h---------HhhcCcccEEEcCCCChhHHHHHHhhhh
Q 037332 337 V---------LDNFGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 337 v---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
. ...++ ...+.+++++.+|-.+++..++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 11222 2578999999999999988775
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.51 E-value=3.5e-06 Score=92.19 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=142.0
Q ss_pred CCCCccchhhHHHHHHHHhccC---CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIG---LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
..+.++|++..++++..++... ......|.|+|++|+|||++|+++++.....| ...+... ... ...+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~---~~~-~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPM---IEK-SGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGG---CCS-HHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchh---ccc-hhHHH
Confidence 4467999999999999888642 23345688999999999999999988764432 1111111 001 11111
Q ss_pred HHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCC------------------CCCCe
Q 037332 268 ERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQF------------------GPGSK 327 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~------------------~~gs~ 327 (1007)
..+.. ..+..+|+||+++.... ...+...+... .++.+
T Consensus 99 --------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 99 --------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 23567899999875532 22332211110 12346
Q ss_pred EEEEeCChhhHh-h--cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh----
Q 037332 328 IIVTTRDKRVLD-N--FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSFL---- 400 (1007)
Q Consensus 328 iliTtR~~~v~~-~--~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l---- 400 (1007)
+|.+|....... . -..+..+++.+++.++..+++.+.+-... .....+....+++.+.|.|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 666665433211 1 12346899999999999999987763222 12234566778888999985544332221
Q ss_pred --cCC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccCCC--CHHHHHHhhcCCC-chhHhHH
Q 037332 401 --HQK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGE--DKDYVTMSQDDPN-FAYYVLN 472 (1007)
Q Consensus 401 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~~~-~~~~~l~ 472 (1007)
.+. +.+.....+.. +..+...++..+++.+..++-. .+. ....+...+.... -.+..++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 111 23333333322 2222334444445555544444 322 2333333332111 1444555
Q ss_pred -HHhhccCeEEccCCeEehhHHHHHH
Q 037332 473 -VLVDKSLVTISCFNKLQMHDLLQEM 497 (1007)
Q Consensus 473 -~L~~~~li~~~~~~~~~mH~lv~~~ 497 (1007)
.|++.++|.....+++.-..-+..+
T Consensus 302 ~~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 302 PYLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHcCceecCCCcccccHHHHHHh
Confidence 7889999988766665544433333
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.50 E-value=2.5e-07 Score=95.98 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCCCccchh---hHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHH
Q 037332 191 DSDGLVGLN---SRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 191 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
..+.++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++..........|+. ....... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---H----
Confidence 345678743 5556666655432 3568889999999999999999998765433344443 2221110 0
Q ss_pred HHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh----hHHHhcCCCCC-CCC-CeEEEEeCChh-----
Q 037332 268 ERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ----LDYLAGGLDQF-GPG-SKIIVTTRDKR----- 336 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~~~~~-~~g-s~iliTtR~~~----- 336 (1007)
.+.. . .+ .++.+||+||++.... .+.+...+... ..+ .++|+||+...
T Consensus 96 ----------------~~~~---~-~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL---E-GL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG---T-TG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH---H-hc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 0 01 3456899999965422 22222221110 122 24788776432
Q ss_pred ----hHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 037332 337 ----VLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVL 396 (1007)
Q Consensus 337 ----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 396 (1007)
+...+....++++++++.++..+++...+..... ....+....+++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1111122268999999999999999887632221 122355678888899887655443
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=2.5e-07 Score=98.70 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=99.5
Q ss_pred CCCCCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE 258 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 258 (1007)
...+.++|++..+++|.+.+... ....+.+.|+|++|+|||++|+++++.....| +.........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHHH
Confidence 34467999999999998877431 12345689999999999999999998764332 2222211111
Q ss_pred cc-CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCC-
Q 037332 259 KE-GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLD- 320 (1007)
Q Consensus 259 ~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~- 320 (1007)
.. +.... .....+......++.+|+|||++... .+..+...+.
T Consensus 90 ~~~~~~~~-------------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 KFIGEGAS-------------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CSTTHHHH-------------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred hccchHHH-------------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 10 00001 11122222334566899999996531 1222222211
Q ss_pred -CCCCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCC
Q 037332 321 -QFGPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGP-EDLLVLSERVLYYANGN 389 (1007)
Q Consensus 321 -~~~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~ 389 (1007)
....+..||.||........ ......+.++..+.++..+++..++....... .. ...+++.+.|.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 11345667778775533221 12345799999999999999988764332221 12 34566666664
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=1e-05 Score=90.52 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=63.5
Q ss_pred hhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCCEEEecCCCCCcC-CcccCCCCCCC
Q 037332 813 IDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVKSLSFAGCRNLVL-PTLLSGLCSLT 890 (1007)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~ 890 (1007)
+..+.+|+.+.+.... ...-...+.++++|+.+.+. +.++.++ ..|..+.+|+.+.|..+ ...+ ...|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4444555555543321 11122344555555555553 2334443 23455666666666543 2222 23567777888
Q ss_pred EEeccCCCCCCCc-hhhCCCCCcCEEEccCCCCccchhhhcCCCCCCEEeeecC
Q 037332 891 ELDLKDCGIREIP-QDIGSVFALEKIDLSGNNFETLPASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 891 ~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n 943 (1007)
.+.|..+ ++.+. ..|.++++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 8887543 66664 45677888888888776321 1 34566777777777654
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.46 E-value=3.4e-06 Score=92.54 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=102.5
Q ss_pred CCCCCCccchhhHHHHHHHHhcc----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCI----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE 258 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 258 (1007)
+...+.++|.+..++++.+.+.. .....+.|.|+|++|+|||++|+++++..... ++..+......
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~i~~~~l~~ 155 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT----FFSISASSLTS 155 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE----EEEEEGGGGCC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe----EEEEehHHhhc
Confidence 33446799999999999887742 11235678999999999999999999875322 22222222111
Q ss_pred cc-CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc-------------hhhHHHhcCCC----
Q 037332 259 KE-GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV-------------GQLDYLAGGLD---- 320 (1007)
Q Consensus 259 ~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------------~~~~~l~~~~~---- 320 (1007)
.. +..... ....+...-..++.+|+||+++.. ..+..++..+.
T Consensus 156 ~~~g~~~~~-------------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 156 KWVGEGEKM-------------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp SSTTHHHHH-------------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred cccchHHHH-------------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 10 000011 111122222356789999998533 11222322211
Q ss_pred CCCCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHHHH
Q 037332 321 QFGPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN-PLALRVL 396 (1007)
Q Consensus 321 ~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 396 (1007)
....+..||.||........ -.....+.+...+.++..+++...+-..... -..+....+++.+.|. +-.+..+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 11234455556654322111 1234578899999999998887766322211 1134567788888884 4455544
Q ss_pred hh
Q 037332 397 GS 398 (1007)
Q Consensus 397 ~~ 398 (1007)
..
T Consensus 295 ~~ 296 (357)
T 3d8b_A 295 CR 296 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.6e-06 Score=100.25 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=104.5
Q ss_pred CCCCccchhhHHHHHHHHhccC---------------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecch
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIG---------------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVRE 255 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 255 (1007)
..+.++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++... ..+...+..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s- 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNAS- 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTT-
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCC-
Confidence 4467999999999999998641 01346899999999999999999999862 222222221
Q ss_pred hhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHH--HhCCCcEEEEEecCCCchh-----hHHHhcCCCCCCCCCeE
Q 037332 256 ESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKK--RLRQMDVFIVLDDVNKVGQ-----LDYLAGGLDQFGPGSKI 328 (1007)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~i 328 (1007)
.... ..+.............. ........+ ...+++.+||||+++.... +..+...+. ..+..|
T Consensus 112 --~~~~--~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~i 182 (516)
T 1sxj_A 112 --DVRS--KTLLNAGVKNALDNMSV---VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPL 182 (516)
T ss_dssp --SCCC--HHHHHHTGGGGTTBCCS---TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCE
T ss_pred --Ccch--HHHHHHHHHHHhccccH---HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCE
Confidence 1111 11222211111111000 000000000 1235678999999965421 233332221 123446
Q ss_pred EEEeCChh---hHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHh
Q 037332 329 IVTTRDKR---VLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP-LALRVLG 397 (1007)
Q Consensus 329 liTtR~~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 397 (1007)
|+++.+.. +.........+++++++.++..+.+...+....... ..+....|++.++|.+ -++..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66655432 222222345889999999999998877664322111 1234567888899855 4444443
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.44 E-value=6.1e-06 Score=86.99 Aligned_cols=197 Identities=17% Similarity=0.130 Sum_probs=103.4
Q ss_pred CCccchhhHHHHHHH-------Hhcc-CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCc-H
Q 037332 193 DGLVGLNSRVEQIKS-------LLCI-GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGV-L 263 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~ 263 (1007)
..++|....++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+. ... ...+. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~--~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPD--KMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGG--GCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHH--HhcCCch
Confidence 457777776665555 2221 234567899999999999999999999753221 1121 111 00100 0
Q ss_pred HHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc------------hhhHHHhcCCCC---CCCCCeE
Q 037332 264 VRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV------------GQLDYLAGGLDQ---FGPGSKI 328 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~i 328 (1007)
.... ......+......+..+|+|||++.. ..++.+...+.. .+....|
T Consensus 107 ~~~~----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKC----------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHH----------------HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHH----------------HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 11122233333456789999998643 112333332221 2233456
Q ss_pred EEEeCChhhHhhc----CcccEEEcCCCCh-hHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC------chHHHHHh
Q 037332 329 IVTTRDKRVLDNF----GVSNIYKVNGLEN-HEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN------PLALRVLG 397 (1007)
Q Consensus 329 liTtR~~~v~~~~----~~~~~~~l~~L~~-~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~------PLal~~~~ 397 (1007)
|.||......... .....+++++++. ++..+++.... .. ..+....+++.+.|. .-++..+-
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 7778776544331 1246789999988 66666655421 11 133467778888774 23333333
Q ss_pred hhhcCCCHHHHHHHHHHhhhC
Q 037332 398 SFLHQKNKLDWEIALENLKLI 418 (1007)
Q Consensus 398 ~~l~~~~~~~w~~~l~~l~~~ 418 (1007)
..........+..++..+...
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHT
T ss_pred HHhhhchHHHHHHHHHHHHHc
Confidence 322223345566666555443
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=1.7e-05 Score=88.65 Aligned_cols=108 Identities=18% Similarity=0.308 Sum_probs=79.9
Q ss_pred CcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCC-cccCCCCCCCEEeccCCCCCCCc-hhhCCCCC
Q 037332 834 PENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLP-TLLSGLCSLTELDLKDCGIREIP-QDIGSVFA 911 (1007)
Q Consensus 834 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~ 911 (1007)
...|.++..|+.+.+..+...--...+.++++|+.+.+.. ....++ ..|.++.+|+.+.|..+ ++.|. ..|.++.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3467888899999887654332234567888999999864 334444 36888999999999764 66664 45788999
Q ss_pred cCEEEccCCCCccchh-hhcCCCCCCEEeeecCC
Q 037332 912 LEKIDLSGNNFETLPA-SMKQLSRLRYLYLINCY 944 (1007)
Q Consensus 912 L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~ 944 (1007)
|+.+.|.. +++.++. .|.+|++|+.+++.++.
T Consensus 336 L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 99999964 4777754 58899999999998764
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.40 E-value=1e-06 Score=99.37 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=101.4
Q ss_pred CCcc-chhhHH--HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCc-eEEEEecchhhhccCcHHHHHH
Q 037332 193 DGLV-GLNSRV--EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEG-KCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 193 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
+.|| |..... ..+......... ...+.|+|++|+||||||+++++.+...+.. .+.+.+. ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 4455 644333 333333333222 5678999999999999999999987665532 2222221 12222
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----hhHHHhcCCCC-CCCCCeEEEEeCChh-------
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----QLDYLAGGLDQ-FGPGSKIIVTTRDKR------- 336 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iliTtR~~~------- 336 (1007)
.+...+... ....+.+.++.+.-+|+|||++... ..+.+...+.. ...|..||+||....
T Consensus 174 ~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 174 DLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 333222211 1223444444466799999996443 22333322211 135778999987632
Q ss_pred --hHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 037332 337 --VLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 337 --v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
+...+....++++++++.++..+++.+.+-..... ...+....|++.++|.+-.+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 22223223578999999999999998876321111 112345667788888875433
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.38 E-value=5.3e-06 Score=87.00 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCccchhhHHHHHHHHhcc---C-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLLCI---G-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.+.++|.+..++++.+++.. . ....+.+.|+|++|+|||++|+++++.....| +............
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhcc
Confidence 45789999888887765421 1 12345688999999999999999999764322 2222221111110
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-----------------hhHHHhcCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-----------------QLDYLAGGLDQ--F 322 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~--~ 322 (1007)
... .......+.......+.+|+||+++... .+..+...+.. .
T Consensus 81 ~~~------------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GLG------------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp THH------------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred Chh------------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000 0111222333333457899999997641 12233322211 1
Q ss_pred CCCCeEEEEeCChhhHhh--c---CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 323 GPGSKIIVTTRDKRVLDN--F---GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
..+..||.||........ . ..+..+.++..+.++..+++..++....... ........+++.+.|.+-
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCH
Confidence 234566667765442211 1 2346788999999999999887763322211 122234677777777754
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.37 E-value=2e-06 Score=93.08 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=99.3
Q ss_pred CCCCccchhhHHHHHHHHhc----------cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-
Q 037332 191 DSDGLVGLNSRVEQIKSLLC----------IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK- 259 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 259 (1007)
.-+.++|.+..+++|.+++. ......+.|.++|++|+|||++|+++++.....| +..+.......
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 91 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 91 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHTTT
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhhcc
Confidence 34678999999999988772 1112245789999999999999999998764332 22222111000
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCCC---CCC
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGLD---QFG 323 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~---~~~ 323 (1007)
.+..... ....+...-..++.+|+||+++.... ...+...+. ...
T Consensus 92 ~g~~~~~-------------------~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 92 MGESEKL-------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp GGGHHHH-------------------HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred cchHHHH-------------------HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 0001111 11222222235678999999974421 222322221 123
Q ss_pred CCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 324 PGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
.+..||.||........ -.....+.++..+.++..+++..++....... .......+++.+.|.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGY 219 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTC
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCC
Confidence 45566667765432211 12346788999999999999988774332211 123456777777774
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.1e-06 Score=97.07 Aligned_cols=194 Identities=13% Similarity=0.160 Sum_probs=109.9
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc--ccCceEEEEecchhhhccCcHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR--EFEGKCFVANVREESEKEGVLVRLR 267 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~ 267 (1007)
.....++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+.. .+...+...+.. ...+ ...+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERG-ISIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCC-HHHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccc-hHHHH
Confidence 3456799999999999999865432 23889999999999999999987642 233222222211 1111 22221
Q ss_pred HHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCChh-hHhh-cCc
Q 037332 268 ERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDKR-VLDN-FGV 343 (1007)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~ 343 (1007)
.. ........... .........-..++-++++|+++... ....+...+.......++|++|.... +... ...
T Consensus 108 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 108 EK-VKNFARLTVSK---PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp TH-HHHHHHSCCCC---CCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HH-HHHHhhhcccc---cchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 11 11111110000 00000111112456799999986543 23444433332334567777775443 1111 111
Q ss_pred ccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 344 SNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 344 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
...+++.+++.++..+.+...+...... -..+....|++.++|.|-.+..
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2478999999999999988776332211 2245678899999999876443
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.33 E-value=4e-06 Score=90.99 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=94.9
Q ss_pred CCCcc-chhh--HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 192 SDGLV-GLNS--RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 192 ~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
.+.|| |... ....+..+..........+.|+|++|+||||||+.+++.....-...+++. . ..+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHH
Confidence 34565 5332 234444444433324567889999999999999999998754311223332 2 11222
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh----hHHHhcCCCC-CCCCCeEEEEeCChh-------
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ----LDYLAGGLDQ-FGPGSKIIVTTRDKR------- 336 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iliTtR~~~------- 336 (1007)
.+...+... ....+.+... +..+|+|||++.... .+.+...+.. ...|.+||+||....
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 222222111 1122222222 356899999965431 2222222111 134667888876432
Q ss_pred --hHhhcCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 037332 337 --VLDNFGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL 391 (1007)
Q Consensus 337 --v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1007)
+...+....++++++ +.++..+++...+...... -..+....+++.+ |..-
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHH
Confidence 122222235789999 9999999998876422211 1234566777777 7653
No 192
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.32 E-value=8.9e-06 Score=90.11 Aligned_cols=194 Identities=15% Similarity=0.076 Sum_probs=103.0
Q ss_pred CCCccchhhHHHHH---HHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchh-hhccCcHHHHH
Q 037332 192 SDGLVGLNSRVEQI---KSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREE-SEKEGVLVRLR 267 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~ 267 (1007)
.+.+||++..++.+ .+.+..+....+.+.|+|++|+|||++|+++++.+...... +.+. .... +.... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~-~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMS-KTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSC-HHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccc-hhHHH
Confidence 46799999987764 44444443334688999999999999999999987643321 1111 1111 11111 22222
Q ss_pred HHHHHHHhccc---------------------c------cc----cCcchHHHHHHHh-----CCC----cEEEEEecCC
Q 037332 268 ERILSEILDEN---------------------I------KI----RTPNLSECIKKRL-----RQM----DVFIVLDDVN 307 (1007)
Q Consensus 268 ~~l~~~~~~~~---------------------~------~~----~~~~~~~~l~~~l-----~~k----r~LlVlDdv~ 307 (1007)
.+.+....+.. . .. ...+....+.... .++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 22222111000 0 00 0111222222111 233 3599999997
Q ss_pred Cch--hhHHHhcCCCCCCCCCeEEEEeCC-----------------hhhHhhcCcccEEEcCCCChhHHHHHHhhhhcCC
Q 037332 308 KVG--QLDYLAGGLDQFGPGSKIIVTTRD-----------------KRVLDNFGVSNIYKVNGLENHEAFKLFCYYAFKG 368 (1007)
Q Consensus 308 ~~~--~~~~l~~~~~~~~~gs~iliTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 368 (1007)
... ....+...+..... ..++++|.. +.+...+ ..+++++++.++..+++..++-..
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHHc
Confidence 653 34445444433222 234444431 1222222 458999999999999998776432
Q ss_pred CCCChhHHHHHHHHHHHhC-CCchHHH
Q 037332 369 NHGPEDLLVLSERVLYYAN-GNPLALR 394 (1007)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~-g~PLal~ 394 (1007)
.. .-..+....+++.+. |.|-.+.
T Consensus 276 ~~--~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 276 DV--EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp TC--CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred CC--CCCHHHHHHHHHHhcCCCHHHHH
Confidence 22 122455677888887 7775444
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.32 E-value=8.5e-06 Score=89.17 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=97.1
Q ss_pred CCCCccchhhHHHHHHHHhcc----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCI----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
.-+.++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++..... ++..+.......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~- 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK- 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh-
Confidence 346799999999999887631 11223468899999999999999999986432 222221111000
Q ss_pred CcHHHHHHHHHHHHhcccccccCcc-hHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCC---CCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPN-LSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGL---DQFG 323 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~---~~~~ 323 (1007)
.... ... ....+...-..++.+|+||+++.... ...++..+ ....
T Consensus 124 -----------------~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 124 -----------------WMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp -----------------C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred -----------------hcch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 0000 011 11222222235678999999975421 22232221 1112
Q ss_pred CCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC
Q 037332 324 PGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGN 389 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1007)
.+..||.||........ -.....+.++..+.++..+++..++....... .......|++.+.|.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGY 252 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTC
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCC
Confidence 44556666654422110 13456788999999999999987764322111 123456777778774
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.30 E-value=3.8e-06 Score=82.84 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=41.6
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..+.++||+.+++++.+.+... ..+.+.|+|++|+|||++|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999998653 3456789999999999999999997644
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.30 E-value=6.3e-06 Score=88.83 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=99.3
Q ss_pred CCCccchhhHHHHHHHHhcc---------C-CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-c
Q 037332 192 SDGLVGLNSRVEQIKSLLCI---------G-LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK-E 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 260 (1007)
-+.++|.+..++.|.+.+.. + ....+.|.|+|++|+|||+||+++++.... ..++.......... .
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhh
Confidence 45788999888888876531 1 123467899999999999999999997621 12222222111100 0
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-------------hhHHHhcCC---CCCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-------------QLDYLAGGL---DQFGP 324 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~ 324 (1007)
+...... ...+...-..++.+|+||+++... ....++..+ .....
T Consensus 88 g~~~~~~-------------------~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 88 GESEKLV-------------------KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp CSCHHHH-------------------HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred hHHHHHH-------------------HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0011111 112222223567899999997551 112222221 11123
Q ss_pred CCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 037332 325 GSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVL 396 (1007)
Q Consensus 325 gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 396 (1007)
+..||.||........ -..+..+.++..+.++..+++..++-...... .......+++.+.|..- .+..+
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4455556654422111 13456788999999999999987763322111 12345677888887643 34443
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.29 E-value=1.4e-05 Score=85.62 Aligned_cols=183 Identities=15% Similarity=0.108 Sum_probs=100.1
Q ss_pred CCCCCCccchhhHHHHHHHHhccC----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCIG----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE 258 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 258 (1007)
+...+.++|.+..++.+.+++... ....+.+.|+|++|+||||+|++++......| +..+......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhh
Confidence 344567999999999998876321 11246789999999999999999998764322 2222211111
Q ss_pred cc-CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-------------hhHHHhc---CCCC
Q 037332 259 KE-GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-------------QLDYLAG---GLDQ 321 (1007)
Q Consensus 259 ~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~---~~~~ 321 (1007)
.. +...... ...+......++.+|+||+++... ....++. ..+.
T Consensus 93 ~~~~~~~~~~-------------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KYVGDGEKLV-------------------RALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SSCSCHHHHH-------------------HHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cccchHHHHH-------------------HHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 00 0011111 111222223567899999996431 1112221 1111
Q ss_pred C--CCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 037332 322 F--GPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRV 395 (1007)
Q Consensus 322 ~--~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 395 (1007)
. +.+..||.||........ -.....+.++..+.++..+++...+-...... ..+....+++.+.|.+- ++..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 1 234556667765432111 02335778888888888888876653222111 12345678888888875 4444
Q ss_pred H
Q 037332 396 L 396 (1007)
Q Consensus 396 ~ 396 (1007)
+
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=1e-05 Score=91.43 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=101.7
Q ss_pred CCCCCCccchhhHHHHHHHHhcc----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhh
Q 037332 189 STDSDGLVGLNSRVEQIKSLLCI----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESE 258 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 258 (1007)
...-+.++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~--- 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD--- 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH---
Confidence 33446799999999999887631 1123467899999999999999999997621 1222221111
Q ss_pred ccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc-------------hhhHHHhcCCCCC---
Q 037332 259 KEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV-------------GQLDYLAGGLDQF--- 322 (1007)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~--- 322 (1007)
+ .... .+. ........+...-..++.+|+||+++.. .....++..+...
T Consensus 204 ----l---~~~~----~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 204 ----L---VSKW----LGE----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp -----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred ----H---Hhhh----cch----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 0 0000 000 0012223333333456789999999754 1133454444321
Q ss_pred CCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 323 GPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||.||........ -..+..+.++..+.++..+++..++...... ........|++.+.|..
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYS 337 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCC
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCC
Confidence 345566667765432211 1334678888889998889988776332211 11234567777788754
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.26 E-value=5.8e-06 Score=89.11 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=86.9
Q ss_pred CccchhhHHHHHHHHhccC-------------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC---ceEEEEecchhh
Q 037332 194 GLVGLNSRVEQIKSLLCIG-------------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE---GKCFVANVREES 257 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~ 257 (1007)
.++|.+..++.+.+++... ......+.|+|++|+|||++|+++++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4789988888887665311 233457899999999999999999987643211 122222111110
Q ss_pred hc-cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc-----------hhhHHHhcCCCCCCCC
Q 037332 258 EK-EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV-----------GQLDYLAGGLDQFGPG 325 (1007)
Q Consensus 258 ~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g 325 (1007)
.. .+... ......+... +..+|+||+++.. +....+...+.....+
T Consensus 112 ~~~~g~~~-------------------~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQYIGHTA-------------------PKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CSSTTCHH-------------------HHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhcccccH-------------------HHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 00000 0111122221 3459999999733 3344554444333456
Q ss_pred CeEEEEeCChhh----------HhhcCcccEEEcCCCChhHHHHHHhhhhc
Q 037332 326 SKIIVTTRDKRV----------LDNFGVSNIYKVNGLENHEAFKLFCYYAF 366 (1007)
Q Consensus 326 s~iliTtR~~~v----------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 366 (1007)
..||.||..... ... ....+++++++.++..+++..++-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 778888764322 221 236889999999999999877763
No 199
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.1e-06 Score=91.53 Aligned_cols=194 Identities=11% Similarity=0.077 Sum_probs=102.6
Q ss_pred CCCCccchhhHHHHHHHHh-ccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEe-----------------
Q 037332 191 DSDGLVGLNSRVEQIKSLL-CIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVAN----------------- 252 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~----------------- 252 (1007)
..+.++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.++..+...-...+++..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 3467899999999999887 4432 223 8999999999999999999864322111111100
Q ss_pred ------cchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCCCCC
Q 037332 253 ------VREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQFGP 324 (1007)
Q Consensus 253 ------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~ 324 (1007)
......... .....+++...+...... .... .+.. +.+++-++|+|+++..+. .+.+...+.....
T Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~---~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 90 SPYHLEITPSDMGNN-DRIVIQELLKEVAQMEQV---DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CSSEEEECCC----C-CHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred ccceEEecHhhcCCc-chHHHHHHHHHHHHhccc---cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 000000000 000111121111110000 0000 0000 233667999999976533 3344433322245
Q ss_pred CCeEEEEeCChh-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhH-HHHHHHHHHHhCCCchHHH
Q 037332 325 GSKIIVTTRDKR-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDL-LVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 325 gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~g~PLal~ 394 (1007)
+.++|++|.+.. +... ......+++.+++.++..+.+...+-..... -. .+.+..|++.++|.+-.+.
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHH
Confidence 677888776542 2111 1223689999999999999998776322111 11 2456788888999885444
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=0.00016 Score=80.38 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=84.7
Q ss_pred hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCCEEEecCCCCCcCC-cccCCCCC
Q 037332 811 SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVKSLSFAGCRNLVLP-TLLSGLCS 888 (1007)
Q Consensus 811 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~ 888 (1007)
..+..+.+|+.+.+..+ ....-...+.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ...++ ..|.++.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34556667777776542 22222345677778888887654 44443 34566778888887544 33333 35778888
Q ss_pred CCEEeccCCCCCCCc-hhhCCCCCcCEEEccCCCCccchh-hhcCCCCCCEEeeec
Q 037332 889 LTELDLKDCGIREIP-QDIGSVFALEKIDLSGNNFETLPA-SMKQLSRLRYLYLIN 942 (1007)
Q Consensus 889 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~ 942 (1007)
|+.+.+.++.+..|+ ..+.++.+|+.+.|.. +++.++. .|.++.+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 888888888888774 4567788888888864 3676654 577888888877754
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.21 E-value=7.2e-06 Score=91.33 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=99.6
Q ss_pred CCCCCccchhhHHHHHHHHhcc----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCI----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK 259 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 259 (1007)
...+.++|.+..++.+.+++.. .....+.|.|+|++|+|||++|++++++.... ++..+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc
Confidence 3346799999999999887721 01224678999999999999999998875332 222222111100
Q ss_pred c-CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-------------hhHHHhcCCC----C
Q 037332 260 E-GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-------------QLDYLAGGLD----Q 321 (1007)
Q Consensus 260 ~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~----~ 321 (1007)
. +.... .....+...-...+.+|+||+++... ....+...+. .
T Consensus 188 ~~g~~~~-------------------~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 YVGEGEK-------------------LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp ----CHH-------------------HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred ccchHHH-------------------HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 00000 01112222223456799999996541 0112221111 1
Q ss_pred CCCCCeEEEEeCChhhHhh---cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 037332 322 FGPGSKIIVTTRDKRVLDN---FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPL-ALRVLG 397 (1007)
Q Consensus 322 ~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 397 (1007)
......||.||........ ......+.+...+.++..+++...+-..... ...+....+++.+.|..- ++..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1223455556654322111 1234578899999999999998776332221 123355778888888654 444443
No 202
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.17 E-value=9.1e-06 Score=91.32 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCCCCCccchhhHH---HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 189 STDSDGLVGLNSRV---EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 189 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
|...+.+||.+..+ ..+...+..+. .+.+.|+|++|+||||+|+.+++.....|.. + +. ...+ ...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l-~a----~~~~-~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---I-SA----VTSG-VKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---E-ET----TTCC-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---E-Ee----ccCC-HHH
Confidence 34456799999888 67777776543 4678999999999999999999986544321 1 11 1111 222
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEE-EeCChhh--Hh-
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIV-TTRDKRV--LD- 339 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ili-TtR~~~v--~~- 339 (1007)
+...+ .. .......+++.+|+||+++... +.+.++..+.. ....+|. ||.+... ..
T Consensus 91 ir~~~-~~---------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAI-ER---------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHH-HH---------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHH-HH---------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 21111 11 0011124578899999997553 23333333221 2233443 5555421 11
Q ss_pred hcCcccEEEcCCCChhHHHHHHhhhhcCCC-----CCChhHHHHHHHHHHHhCCCchHHH
Q 037332 340 NFGVSNIYKVNGLENHEAFKLFCYYAFKGN-----HGPEDLLVLSERVLYYANGNPLALR 394 (1007)
Q Consensus 340 ~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~g~PLal~ 394 (1007)
......++.+++++.++..+++.+.+-... ....-..+....+++.++|.+-.+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 112235889999999999999987764311 1112234567788888999875443
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=1.1e-06 Score=86.38 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=61.8
Q ss_pred hhhhcCCCCCEEeccCC-CCCc----cCCcccCCCCCCCEEEeccccCcccChhhhcCCCCCEEEecCCCCCcCCcccCC
Q 037332 811 SSIDHLERLRNLKLREC-SKLV----SLPENLGSLKSLVYIEAERSAISQVPASIAHLNEVKSLSFAGCRNLVLPTLLSG 885 (1007)
Q Consensus 811 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 885 (1007)
..+...++|++|+|++| .... .+...+...++|+.|++++|.+..-.. ..+...+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~------------------~~l~~~L~~ 91 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA------------------FALAEMLKV 91 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH------------------HHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH------------------HHHHHHHHh
Confidence 34455666666666666 3321 122333444455555555554442100 001122233
Q ss_pred CCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEc--cCCCCcc-----chhhhcCCCCCCEEeeecCCC
Q 037332 886 LCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDL--SGNNFET-----LPASMKQLSRLRYLYLINCYM 945 (1007)
Q Consensus 886 l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~~~~l~~L~~L~L~~n~~ 945 (1007)
.++|++|+|++|.|++ +...+...++|++|+| ++|.+.. +...+...++|++|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556666666666663 4455566667777777 6676652 344556667777777777653
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=4.4e-05 Score=81.48 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=89.8
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
-+.++|.+..++++.+++.. +-...+.|.|+|++|+|||++|++++...... .+..+
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~-------- 81 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK-------- 81 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEEC--------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEE--------
Confidence 35688999888888877642 12334678999999999999999999876422 22211
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh----------------hHHHhcCCCC--C
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ----------------LDYLAGGLDQ--F 322 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~--~ 322 (1007)
...+.... .+.. .......+.......+.++++|+++.... ...++..+.. .
T Consensus 82 --~~~l~~~~----~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 --GPELLTMW----FGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHHHHHH----HTTC----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --hHHHHhhh----cCch----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 11121111 1111 01223334444445678999999974211 2233322211 1
Q ss_pred CCCCeEEEEeCChhhHhh--c---CcccEEEcCCCChhHHHHHHhhhh
Q 037332 323 GPGSKIIVTTRDKRVLDN--F---GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
..+..||.||........ . .....+.++..+.++..+++..+.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 234567777765532221 1 244688999999999888887665
No 205
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=3.1e-05 Score=83.99 Aligned_cols=177 Identities=13% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRER 269 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (1007)
...+.++|.+..++.+.+++..+. ..+++.+.|++|+|||++|+++++.+... ++..+.. ..+ ...+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~----~~~i~~~----~~~-~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD----MMFVNGS----DCK-IDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE----EEEEETT----TCC-HHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC----EEEEccc----ccC-HHHHHHH
Confidence 345789999999999999987543 33577888999999999999999876322 2222211 111 2222111
Q ss_pred HHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch---hhHHHhcCCCCCCCCCeEEEEeCChhhHh-h-cCcc
Q 037332 270 ILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG---QLDYLAGGLDQFGPGSKIIVTTRDKRVLD-N-FGVS 344 (1007)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iliTtR~~~v~~-~-~~~~ 344 (1007)
+ ........ ..+++.++|+||++... ..+.+...+.....+.++|+||....-.. . ....
T Consensus 93 ~-~~~~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 L-TNFASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp H-HHHHHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred H-HHHHhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 1 11111000 12367899999998765 34444443332235678888887653211 0 0112
Q ss_pred cEEEcCCCChhHHHHHHh-------hhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 037332 345 NIYKVNGLENHEAFKLFC-------YYAFKGNHGPEDLLVLSERVLYYANGNPLA 392 (1007)
Q Consensus 345 ~~~~l~~L~~~~a~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1007)
.++++++++.++..+++. ..+........ ..+....+++.++|.+-.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHH
Confidence 479999999888543322 22211111110 024566777888877643
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00048 Score=76.39 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=57.6
Q ss_pred cccCCCCceeccCcccccccc-hhhhcCCCCCEEeccCCCCCccCCcccCCCCCCCEEEeccccCcccC-hhhhcCCCCC
Q 037332 790 LEKMERLSYMDLSWTKIKELK-SSIDHLERLRNLKLRECSKLVSLPENLGSLKSLVYIEAERSAISQVP-ASIAHLNEVK 867 (1007)
Q Consensus 790 l~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~ 867 (1007)
+..+.+|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ....-...|.++++|+.+.+.++.++.++ ..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344445555544432 33332 23445555666655432 11122235566667777777666666554 3456667777
Q ss_pred EEEecCCCCCcCC-cccCCCCCCCEEeccCCCCCCC
Q 037332 868 SLSFAGCRNLVLP-TLLSGLCSLTELDLKDCGIREI 902 (1007)
Q Consensus 868 ~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l 902 (1007)
.+.|..+ ...+. ..|.++.+|+.+.|..+ ++.|
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 7777543 33332 35677777777777543 4444
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.98 E-value=0.00012 Score=79.27 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=99.1
Q ss_pred hhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC---------------------ceEEEEecchhh
Q 037332 199 NSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE---------------------GKCFVANVREES 257 (1007)
Q Consensus 199 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 257 (1007)
+...+.+.+.+..+. -.+.+.++|+.|+|||++|+.+++.+..... ...++. .....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccC
Confidence 344556666665432 2457889999999999999999997643221 111111 00000
Q ss_pred hccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 258 EKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
...+ +..+ +.+...+.... ..+++-++|+|+++... ..+.++..+....+++.+|++|.+.
T Consensus 86 ~~~~-i~~i-r~l~~~~~~~~---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLG-VDAV-REVTEKLNEHA---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBC-HHHH-HHHHHHTTSCC---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCC-HHHH-HHHHHHHhhcc---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 0001 1111 11111111000 12467789999997653 3455655554445567777777665
Q ss_pred h-hHhh-cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 037332 336 R-VLDN-FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLG 397 (1007)
Q Consensus 336 ~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 397 (1007)
+ +... ......+++.++++++..+.+.... .. ..+.+..+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~----~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM----SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC----CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 2222 1223689999999999999988775 11 12445778899999997655443
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=7.6e-05 Score=80.97 Aligned_cols=172 Identities=22% Similarity=0.255 Sum_probs=99.7
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK- 259 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 259 (1007)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 36688999999888876532 223456788999999999999999999865443 22222221111
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC-
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF- 322 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1007)
.+.-....+.+ +...-...+++|++|+++... .+..++..+..+
T Consensus 223 vGese~~vr~l-------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVREL-------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHHHH-------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHH-------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 11111222222 222223568999999986431 022233222222
Q ss_pred -CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 323 -GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 -~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||.||-.++..+. -..+..++++.-+.++..++|..+.-+.... ..++ ..+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 234445666655433221 2457899999999999999998776332211 1223 45667777764
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=2.8e-06 Score=83.58 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=78.8
Q ss_pred ccccccCCCCceeccCcc-ccc-----ccchhhhcCCCCCEEeccCCCCCcc----CCcccCCCCCCCEEEeccccCccc
Q 037332 787 PEILEKMERLSYMDLSWT-KIK-----ELKSSIDHLERLRNLKLRECSKLVS----LPENLGSLKSLVYIEAERSAISQV 856 (1007)
Q Consensus 787 ~~~l~~l~~L~~L~l~~n-~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~ 856 (1007)
...+...++|++|+|++| .+. .+...+...++|++|+|++|..... +...+...++|+.|++++|.++.-
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345677899999999999 887 3456677889999999999986432 233344445666666666655521
Q ss_pred ChhhhcCCCCCEEEecCCCCCcCCcccCCCCCCCEEec--cCCCCCC-----CchhhCCCCCcCEEEccCCCCc
Q 037332 857 PASIAHLNEVKSLSFAGCRNLVLPTLLSGLCSLTELDL--KDCGIRE-----IPQDIGSVFALEKIDLSGNNFE 923 (1007)
Q Consensus 857 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 923 (1007)
.. ..+...+...++|++|+| ++|.++. +...+...++|++|+|++|.+.
T Consensus 109 g~------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GI------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HH------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HH------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 00 001223344556777777 6677773 4455666778888888888765
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.97 E-value=7.5e-05 Score=84.88 Aligned_cols=148 Identities=13% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------CceEEEEecchhhhccCcHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 264 (1007)
..+.+|||+.+++.+...+.... ..-+.|+|++|+|||++|+.++..+...+ ...++..+.. .
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--T------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--c-------
Confidence 44679999999999999986532 23567999999999999999999874432 2222222111 0
Q ss_pred HHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhh----
Q 037332 265 RLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDN---- 340 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~---- 340 (1007)
...+ .........+...-..++.+|++| ...+....+...+. ....++|.+|........
T Consensus 247 --------~~~g----~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 247 --------KYRG----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --------cccc----hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 0000 001223333444444567899999 22333334444443 223556666554431110
Q ss_pred ---cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 341 ---FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 341 ---~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
...-.++.++..+.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0111368999999999999998655
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=3e-05 Score=75.83 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHhccCC-CCeEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEEecchhhhccCcHHHHHHHHHHHHh
Q 037332 198 LNSRVEQIKSLLCIGL-PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVANVREESEKEGVLVRLRERILSEIL 275 (1007)
Q Consensus 198 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (1007)
....++.+.+++..-. .....++|+|++|+||||||+.++..+..... ...++. ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHhc
Confidence 3344444444443221 23468999999999999999999998752222 233332 3333333332222
Q ss_pred cccccccCcchHHHHHHHhCCCcEEEEEecCCC--chhhH--HHhcCCC-CCCCCCeEEEEeCCh
Q 037332 276 DENIKIRTPNLSECIKKRLRQMDVFIVLDDVNK--VGQLD--YLAGGLD-QFGPGSKIIVTTRDK 335 (1007)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~--~l~~~~~-~~~~gs~iliTtR~~ 335 (1007)
.... . ..+ +.+. +.-+|||||++. .+.|. .+...+. ....|..+|+||...
T Consensus 88 ~~~~----~---~~~-~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 EGKD----T---KFL-KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCC----S---HHH-HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CchH----H---HHH-HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 1 112 2222 345899999973 33322 2221111 112567888888643
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.91 E-value=3.4e-05 Score=87.61 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=88.4
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
+.++|.+..++++.+++... ....+.|.|+|++|+|||++|+++++.... .++..+.........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 46899999999998877431 233456889999999999999999887532 222222222111100
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--------h-----hhHHHhcCCCC--CCCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--------G-----QLDYLAGGLDQ--FGPGS 326 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~-----~~~~l~~~~~~--~~~gs 326 (1007)
.... ......+.....+++.+|+||+++.. . ....++..+.. ...+.
T Consensus 280 --g~~~----------------~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 280 --GESE----------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --THHH----------------HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --chhH----------------HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 0000 11223333344566789999998321 1 12223222211 12344
Q ss_pred eEEEEeCChhhH-----hhcCcccEEEcCCCChhHHHHHHhhhhc
Q 037332 327 KIIVTTRDKRVL-----DNFGVSNIYKVNGLENHEAFKLFCYYAF 366 (1007)
Q Consensus 327 ~iliTtR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 366 (1007)
+||.||...... ........+.+...+.++..+++..++-
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 566666654321 1113445789999999999999987763
No 213
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.90 E-value=1.4e-05 Score=74.83 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=35.8
Q ss_pred CccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 194 GLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999888774322223457899999999999999999864
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=0.0001 Score=90.71 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=82.5
Q ss_pred CCCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------CceEEEEecchhhhccCcH
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGKCFVANVREESEKEGVL 263 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 263 (1007)
...+.+|||+.+++++.+.+.... .+.+.++|.+|+||||+|+.+++.+.... ...++..+.......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g---- 240 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG---- 240 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc----
Confidence 345679999999999999886532 34578999999999999999999874321 233333322111000
Q ss_pred HHHHHHHHHHHhccccccc-CcchHHHHHHHhC-CCcEEEEEecCCCchh-------h---HHHhcCCCCCCCCCeEEEE
Q 037332 264 VRLRERILSEILDENIKIR-TPNLSECIKKRLR-QMDVFIVLDDVNKVGQ-------L---DYLAGGLDQFGPGSKIIVT 331 (1007)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~-------~---~~l~~~~~~~~~gs~iliT 331 (1007)
...... ...+...+...-. +++.+|+||+++.... + ..+...+. ..+.++|.+
T Consensus 241 -------------~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 241 -------------AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred -------------CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 000000 0111222222222 3678999999976431 1 11222211 123456655
Q ss_pred eCChhhH-----hhc-CcccEEEcCCCChhHHHHHHhhh
Q 037332 332 TRDKRVL-----DNF-GVSNIYKVNGLENHEAFKLFCYY 364 (1007)
Q Consensus 332 tR~~~v~-----~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 364 (1007)
|...... ... ..-..+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5543321 111 11135899999999999988643
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00013 Score=80.12 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=98.2
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK- 259 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 259 (1007)
-+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..........
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 35789999999998876531 223467889999999999999999999865443 22222221111
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC-
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF- 322 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1007)
.+.-....+. .+...-...+++|++|+++... ....++..+..+
T Consensus 284 vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 284 VGEGARMVRE-------------------LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SSHHHHHHHH-------------------HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHH-------------------HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 1111122222 2222224568999999986331 011222222211
Q ss_pred -CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 323 -GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 -~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||.||-..+.... -..+..++++..+.++..++|..+.-+-... ..++ ..|++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 223344556654432221 1356789999999999999998776332211 1222 45667777764
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.86 E-value=5.1e-05 Score=75.77 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCCccchh----hHHHHHHHHhccCCCC--eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 192 SDGLVGLN----SRVEQIKSLLCIGLPV--FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 192 ~~~~vGr~----~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.+.|++.. ..++.+.+++...... .+.+.|+|++|+|||+||+++++....+....+|+.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34566544 2344455555433221 268899999999999999999998765544455553
No 217
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=0.00013 Score=79.40 Aligned_cols=180 Identities=12% Similarity=0.197 Sum_probs=101.6
Q ss_pred CCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHHH
Q 037332 192 SDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
...++|.+..++.+...+..+. ...+.++|++|+||||+|+.++..+... +...+.-.+. +...+ ...+.+ .
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~-~~~ir~-~ 96 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRG-IDVVRN-Q 96 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCS-HHHHHT-H
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccccc-HHHHHH-H
Confidence 3567899988888888886543 2238899999999999999999976432 2211111111 11111 222211 1
Q ss_pred HHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCChh-hHhh-cCcccE
Q 037332 271 LSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDKR-VLDN-FGVSNI 346 (1007)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~ 346 (1007)
......... ...+.+-++|+|+++.. +..+.+...+......+++|++|.... +... ......
T Consensus 97 i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 97 IKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 111110000 01234678999998643 234444433332345667777765442 1111 112247
Q ss_pred EEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 037332 347 YKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLAL 393 (1007)
Q Consensus 347 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 393 (1007)
+++.+++.++..+.+...+-..... -..+..+.+++.++|.+-.+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 8999999999888887665222111 12345677888899987643
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00034 Score=77.28 Aligned_cols=172 Identities=22% Similarity=0.283 Sum_probs=99.7
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..........+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 35688999999888876632 223457899999999999999999999865433 222222221111
Q ss_pred -CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC-
Q 037332 261 -GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF- 322 (1007)
Q Consensus 261 -~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1007)
+.-....+. .+...-...+++|++|+++... .+..++..+..+
T Consensus 256 ~Gese~~ir~-------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIRE-------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHH-------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHH-------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 111111111 2222223568999999996331 022333322211
Q ss_pred -CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCC-CChhHHHHHHHHHHHhCCCc
Q 037332 323 -GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNH-GPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 -~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||.||-.++.... -..+..++++.-+.++..++|..+.-+... ...++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 234567777765543322 124678899888888888888776643221 11223 45666777754
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=7.1e-05 Score=82.57 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK 259 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 259 (1007)
.-+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 346789999999998876421 223457889999999999999999999865432 22222222111
Q ss_pred -cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch------------h----hHHHhcCCCCC
Q 037332 260 -EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG------------Q----LDYLAGGLDQF 322 (1007)
Q Consensus 260 -~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~ 322 (1007)
.+.-....+.++. ..-...+++|++|+++... . ...++..+..+
T Consensus 255 ~vGese~~ir~lF~-------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDAFA-------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHHHH-------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHH-------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 1111222222221 1122457899999984220 0 22333333322
Q ss_pred C--CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCC-CChhHHHHHHHHHHHhCCCc
Q 037332 323 G--PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNH-GPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 ~--~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 390 (1007)
. .+..||.||..++.... -..+..++++..+.++..++|..+.-+-.. ...++ ..+++.+.|.-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 2 33455557765543322 134678899998998888888766532221 11222 45666777753
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=0.00083 Score=72.69 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=128.3
Q ss_pred CCCccchhhHHHHHHHHhccC---CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHH
Q 037332 192 SDGLVGLNSRVEQIKSLLCIG---LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRE 268 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 268 (1007)
.+.++|.+..++.+...+..+ ......+.|+|++|+||||||+.++..+...|. ... .... .. ..++
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~--~~-~~~l-- 93 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL--VK-QGDM-- 93 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC--CS-HHHH--
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh--cC-HHHH--
Confidence 356788888777777666432 223457899999999999999999997643321 110 0000 00 1111
Q ss_pred HHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCC--------C----------CCCeE
Q 037332 269 RILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQF--------G----------PGSKI 328 (1007)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~--------~----------~gs~i 328 (1007)
...+ ..+ .++.++++|++.... ..+.+....... + +...+
T Consensus 94 ------------------~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 94 ------------------AAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------------HHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------------HHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0111 111 234467788875432 223232111000 0 01122
Q ss_pred E-EEeCChhhHhhc--CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh------
Q 037332 329 I-VTTRDKRVLDNF--GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNPLALRVLGSF------ 399 (1007)
Q Consensus 329 l-iTtR~~~v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~------ 399 (1007)
+ .|++...+.... ...-.+.+++.+.++-.+++.+.+-.... .-..+.+..|++.+.|.|-.+..+...
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 244433221111 12236899999999999999877632111 222456788999999999544332221
Q ss_pred hcCC---CHHHHHHHHHHhhhCCCCchHHHHHhhhhccchhhHHHhhhhhcccCCC--CHHHHHHhhcCCCc-hhHhHH-
Q 037332 400 LHQK---NKLDWEIALENLKLICDPDIYDVLKVSYNELKAEEKSMFLDIACFFKGE--DKDYVTMSQDDPNF-AYYVLN- 472 (1007)
Q Consensus 400 l~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~~~~-~~~~l~- 472 (1007)
..+. +.+....++..+.. ....++...+..+..++-...+. ..+.+......... .+...+
T Consensus 232 ~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~ 299 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEP 299 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHH
T ss_pred HcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHH
Confidence 1111 33444444443321 11234444444433322222221 22333333322211 122222
Q ss_pred HHhhccCeEEccCCeEehhHHH
Q 037332 473 VLVDKSLVTISCFNKLQMHDLL 494 (1007)
Q Consensus 473 ~L~~~~li~~~~~~~~~mH~lv 494 (1007)
.|+..++|+....+++....-.
T Consensus 300 ~l~~~g~i~~~~~gr~~~~~~~ 321 (334)
T 1in4_A 300 YLLQAGFLARTPRGRIVTEKAY 321 (334)
T ss_dssp HHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHcCCeecccccHHhhHHHH
Confidence 7889999998877776544433
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.72 E-value=1.9e-05 Score=82.93 Aligned_cols=153 Identities=17% Similarity=0.233 Sum_probs=83.5
Q ss_pred CCCCccchhhHHHHHHHHhcc----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCI----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
..+.++|.+..++++.+.+.. +....+-+.|+|++|+|||++|+++++.....|-. .........
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~----v~~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS----MGGSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC----CCSCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE----echHHHHHh-
Confidence 346799999888888776541 11112347799999999999999999976543321 111110000
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-----------------hhHHHhcCCCCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-----------------QLDYLAGGLDQFG 323 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~~ 323 (1007)
..+.. .......+......++.+|+||+++... .+..+...+....
T Consensus 84 -------------~~~~~----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 84 -------------FVGLG----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -------------CSSSC----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -------------hcchH----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00000 0111122233333456899999996432 1223333332211
Q ss_pred ---CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 324 ---PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 324 ---~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
....||.||........ ......+.++..+.++..+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 22456666655432111 1234567888888888888887655
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00017 Score=77.45 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCccchhhHHHHHHHHhcc------------CCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCI------------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|.+..++.+...+.. .......+.++|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999888877643 011235678999999999999999998763
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.72 E-value=0.00024 Score=86.61 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc------cCceEEEEecchhhhccCcHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE------FEGKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 264 (1007)
..+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.++..+... ....+|..+.....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 4467999999999999998654 23456899999999999999999976432 23333332221110
Q ss_pred HHHHHHHHHHhcccccccCc-chHHHHHHHhCCCcEEEEEecCCCc--------hh---hHHHhcCCCCCCCCCeEEEEe
Q 037332 265 RLRERILSEILDENIKIRTP-NLSECIKKRLRQMDVFIVLDDVNKV--------GQ---LDYLAGGLDQFGPGSKIIVTT 332 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~--------~~---~~~l~~~~~~~~~gs~iliTt 332 (1007)
.+.......+ .+...+...-..++.+|++|+++.. .. ...+...+. ..+.++|.+|
T Consensus 255 ----------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 255 ----------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ----------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred ----------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 0000000001 1112222222345789999999755 12 222333333 2345666666
Q ss_pred CChhhHhhc-------CcccEEEcCCCChhHHHHHHhhhh
Q 037332 333 RDKRVLDNF-------GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 333 R~~~v~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
......... ..-..+.++..+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 654322111 011368999999999888886543
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0002 Score=78.92 Aligned_cols=172 Identities=21% Similarity=0.237 Sum_probs=92.3
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK- 259 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 259 (1007)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 35688999999988876632 223457789999999999999999999865433 22222221111
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCC--
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQ-- 321 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~-- 321 (1007)
.+.....++.+ +...-...++++++|+++... .+..++..+..
T Consensus 247 ~Ge~e~~ir~l-------------------F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LGEGPRMVRDV-------------------FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CSHHHHHHHHH-------------------HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHH-------------------HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 11111222222 222223567899999884211 02223322221
Q ss_pred CCCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhH-HHHHHhhhhcCCCC-CChhHHHHHHHHHHHhCCCc
Q 037332 322 FGPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHE-AFKLFCYYAFKGNH-GPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 322 ~~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~-a~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 390 (1007)
...+..||.||-..+.... ...+..+++..+++.+ -.++|..+.-+... +..++ ..+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 1234456667754432221 1345677887665544 45566555432221 11223 45666677753
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.70 E-value=0.00033 Score=78.74 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=96.5
Q ss_pred CCCccchhhHHHHHHHHhcc--C--------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLLCI--G--------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.+.++|.+..++++.+.... . ..-.+-|.|+|++|+|||+||++++......| +..+.......+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 35688988887777665421 1 11224588999999999999999998764332 2222222111110
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF--G 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 323 (1007)
.. ........+.......+.+|+||+++... .+..++..+..+ .
T Consensus 91 g~------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 GV------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp TH------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred cc------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 00112233444445678899999985421 123333222111 2
Q ss_pred CCCeEEEEeCChhhHhh--c---CcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 324 PGSKIIVTTRDKRVLDN--F---GVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
.+..||.||...+.... . ..+..+.++..+.++-.+++..++-........ ....+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 35567777766644321 1 234588999988888888887666332211111 0244677788876
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=0.00015 Score=78.06 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=38.7
Q ss_pred CccchhhHHHHHHHHhccCC-------CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 194 GLVGLNSRVEQIKSLLCIGL-------PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.++|.+..++.+...+.... .....+.++|++|+|||++|+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 57899999888887775321 12358999999999999999999997644
No 227
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.00027 Score=73.58 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCCccchhhHHHHHHHHhcc---C-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhcc
Q 037332 191 DSDGLVGLNSRVEQIKSLLCI---G-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKE 260 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 260 (1007)
..+.++|.+..++++.+.+.. . ....+-+.|+|++|+||||+|+++++.....| +.+ +........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHHh
Confidence 346789998888777665421 0 11234588999999999999999998764332 222 111111000
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc----------------hhhHHHhcCCCC--C
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV----------------GQLDYLAGGLDQ--F 322 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~--~ 322 (1007)
...........+.......+.++++|+++.. .....++..+.. .
T Consensus 86 ------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 86 ------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0000011122233333455679999998321 112222221111 1
Q ss_pred CCCCeEEEEeCChhhHh-hc----CcccEEEcCCCChhHHHHHHhhhh
Q 037332 323 GPGSKIIVTTRDKRVLD-NF----GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 323 ~~gs~iliTtR~~~v~~-~~----~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
..+..||.||...+... .. ..+..+.++..+.++-.+++..+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 23455666776553221 11 234678888888888888887665
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00061 Score=74.12 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=97.3
Q ss_pred CCCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-
Q 037332 192 SDGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK- 259 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 259 (1007)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.....+....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 35678999999888876532 123457899999999999999999999865443 22222221111
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCC-
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQF- 322 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1007)
.+.-....+.++ ...-...+++|++|+++... .+..++..+...
T Consensus 257 vGesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCRQIF-------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHH-------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111112222222 22223567899999885321 012232222211
Q ss_pred -CCCCeEEEEeCChhhHhh-c----CcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 323 -GPGSKIIVTTRDKRVLDN-F----GVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 323 -~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..+..||.||-..+..+. + ..+..++++.-+.++..++|..+.-+.... ..++ ..+++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 234455667755544332 1 245678898888888888988776332211 1223 45666677654
No 229
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=2.5e-05 Score=80.58 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=41.5
Q ss_pred hccCccceEEecCCCCCc--ccccccccCCCCceeccCcccccccchhhhcCC--CCCEEeccCCCCCccCC
Q 037332 767 CKLRSLYWLYLNNCSKLE--SFPEILEKMERLSYMDLSWTKIKELKSSIDHLE--RLRNLKLRECSKLVSLP 834 (1007)
Q Consensus 767 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~~ 834 (1007)
.++++|+.|+|++|...+ .++..+..+++|+.|+|++|.+..+. .+..+. +|++|++++|+..+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 456777777777766554 44455667777777777777776552 233333 66666666666554443
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.65 E-value=0.00028 Score=73.80 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999998888776643222235678999999999999999998654
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.63 E-value=0.00036 Score=84.81 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=85.6
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc------CceEEEEecchhhhccCcHH
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF------EGKCFVANVREESEKEGVLV 264 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 264 (1007)
..+.+|||+.+++++...+.... ..-+.++|++|+|||++|+.+++.+.... ...++..+. +
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g--- 245 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G--- 245 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c---
Confidence 44679999999999999986532 23478999999999999999999863321 222222111 0
Q ss_pred HHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHhhc---
Q 037332 265 RLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNF--- 341 (1007)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~--- 341 (1007)
..........+...+......++.+|++| ...+....+.+.+. ....++|.||.........
T Consensus 246 -----------~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 246 -----------TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----------ccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 00000011233444444555678899999 22333334444443 2345666666544411100
Q ss_pred ----CcccEEEcCCCChhHHHHHHhhhh
Q 037332 342 ----GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 342 ----~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
..-..+.++..+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 011478999999999999998554
No 232
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=4.1e-05 Score=78.97 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCCCEEeccCCCCCCCc---hhhCCCCCcCEEEccCCCCccchhhhcCCC--CCCEEeeecCCCCCcCC
Q 037332 886 LCSLTELDLKDCGIREIP---QDIGSVFALEKIDLSGNNFETLPASMKQLS--RLRYLYLINCYMLQTLP 950 (1007)
Q Consensus 886 l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~--~L~~L~L~~n~~l~~~p 950 (1007)
+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+++.+. .+..+. +|++|+|++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 344444444444444322 33344555555555555555442 122222 55555555555544443
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.52 E-value=0.00041 Score=73.52 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..+.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467889999999999999999998743
No 234
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=0.00013 Score=69.59 Aligned_cols=85 Identities=12% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCCCEEEecCCCCCcC-CcccCCCCCCCEEeccCCC-CCCC-chhhCCC----CCcCEEEccCC-CCccc-hhhhcCCCC
Q 037332 864 NEVKSLSFAGCRNLVL-PTLLSGLCSLTELDLKDCG-IREI-PQDIGSV----FALEKIDLSGN-NFETL-PASMKQLSR 934 (1007)
Q Consensus 864 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~l-p~~l~~l----~~L~~L~L~~n-~l~~l-p~~~~~l~~ 934 (1007)
.+|+.|++++|.+... ...+.++++|+.|+|++|. +++- -..+..+ ++|++|+|++| +++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3566666666653211 1224567777777777773 5531 1223332 46888888877 36621 124566788
Q ss_pred CCEEeeecCCCCCc
Q 037332 935 LRYLYLINCYMLQT 948 (1007)
Q Consensus 935 L~~L~L~~n~~l~~ 948 (1007)
|+.|+|++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888875553
No 235
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.48 E-value=3e-05 Score=72.38 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=34.3
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3578999998888887643112223577999999999999999987643
No 236
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.47 E-value=8.2e-05 Score=70.90 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred cccEEecCCccccccchhhhhccCccceEEecCCCCCccc-ccccccC----CCCceeccCccc-cccc-chhhhcCCCC
Q 037332 747 TLVKLDLSYCTRLKSLSTSICKLRSLYWLYLNNCSKLESF-PEILEKM----ERLSYMDLSWTK-IKEL-KSSIDHLERL 819 (1007)
Q Consensus 747 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l----~~L~~L~l~~n~-l~~l-~~~~~~l~~L 819 (1007)
+|+.|++++|.....--..+..+++|++|+|++|..++.- -..+..+ ++|+.|+|+++. ++.- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555433332233445555666666655433221 1122221 245555554432 3311 1233455666
Q ss_pred CEEeccCCCCCc
Q 037332 820 RNLKLRECSKLV 831 (1007)
Q Consensus 820 ~~L~l~~~~~~~ 831 (1007)
++|++++|+..+
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666665443
No 237
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.43 E-value=0.00036 Score=74.29 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=37.6
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998888775422233467799999999999999999854
No 238
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.0005 Score=72.88 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=86.4
Q ss_pred chhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh---hcccCceEEEEecchhhhccCcHHHHHHHHHHH
Q 037332 197 GLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN---FREFEGKCFVANVREESEKEGVLVRLRERILSE 273 (1007)
Q Consensus 197 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1007)
|-++.++.+.+.+..+. .+...++|++|+||||+|+.+++.. ...+.....+. .. ....+ +..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~--~~~~~-id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE--GENIG-IDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS--SSCBC-HHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC--cCCCC-HHHH-HHHHHH
Confidence 34556677777776544 6788999999999999999998752 11223333332 11 00112 2222 223332
Q ss_pred HhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch--hhHHHhcCCCCCCCCCeEEEEeCCh-hhHhhcCcccEEEcC
Q 037332 274 ILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG--QLDYLAGGLDQFGPGSKIIVTTRDK-RVLDNFGVSNIYKVN 350 (1007)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~~~~~~~~l~ 350 (1007)
....+ ..+++-++|+|+++... ..+.++..+....+.+.+|++|.++ .+....... ++++.
T Consensus 74 ~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 74 LNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp HTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred Hhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 22111 12456789999997543 4555655554445677777776554 333333333 89999
Q ss_pred CCChhHHHHHHhhhh
Q 037332 351 GLENHEAFKLFCYYA 365 (1007)
Q Consensus 351 ~L~~~~a~~Lf~~~a 365 (1007)
++++++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887765
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=0.0011 Score=74.78 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=92.7
Q ss_pred CCCCCccchhhHHHHHHHHhcc--C--------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc
Q 037332 190 TDSDGLVGLNSRVEQIKSLLCI--G--------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK 259 (1007)
Q Consensus 190 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 259 (1007)
...++++|.+..+.++.+.... . -.-.+-|.|+|++|+||||||++++...... .+..+.......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~----~i~i~g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP----FITASGSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC----EEEEEGGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEEehhHHHHh
Confidence 3446789998887777665421 1 0112348999999999999999999876422 222222111111
Q ss_pred cCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC----CCcEEEEEecCCCch----------------hhHHHhcCC
Q 037332 260 EGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR----QMDVFIVLDDVNKVG----------------QLDYLAGGL 319 (1007)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------------~~~~l~~~~ 319 (1007)
+. ......++..++ ..+.++++|+++... .+..++..+
T Consensus 104 ~~----------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 FV----------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp CT----------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred hh----------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 00 011122223232 234799999985321 123333322
Q ss_pred CCC--CCCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 037332 320 DQF--GPGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHGPEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 320 ~~~--~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1007)
..+ ..+..|+.||..++.... ...+..+.++..+.++-.+++..++-+.....+. ....++..+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 211 233455566666654332 1245688999999999889887765322111111 1234666676765
No 240
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.36 E-value=0.0027 Score=71.83 Aligned_cols=50 Identities=30% Similarity=0.215 Sum_probs=38.3
Q ss_pred CCCccchhhHHHHHHHHh---ccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 192 SDGLVGLNSRVEQIKSLL---CIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+.++|.+..++.+..++ ..+....+-+.++|++|+|||++|+++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 368999999887655443 33333345688999999999999999998764
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.28 E-value=0.00025 Score=66.44 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
....++|+|..|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999997654
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.0018 Score=67.12 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCCccchhhHHHHHHHHhcc--C--------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLLCI--G--------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.+.++|.+..+.++.+.... . -.-.+-+.|+|++|+||||||+.++...... .+.+. .........
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~~~~~~~~ 90 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMFV 90 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHHSCT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HHHHHHHHh
Confidence 35677777666655543321 0 0111238999999999999999999876421 22222 111100000
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch------------h----hHHHhcCCCCC--C
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG------------Q----LDYLAGGLDQF--G 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~--~ 323 (1007)
.... ......++..-.....++++|+++... . ...+...+..+ .
T Consensus 91 --~~~~----------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 91 --GVGA----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp --THHH----------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred --hHHH----------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 0000 011112222222346799999984221 1 12232222211 1
Q ss_pred CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 324 PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
....++.||..++.... ...+..++++..+.++-.+++..++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 22344556666654332 1345688999999988888887665
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.22 E-value=0.00072 Score=80.47 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=96.7
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-c
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK-E 260 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 260 (1007)
+.+.|.++.+++|.+++.. +-...+-|.++|++|+|||+||++++++.... ++..+..+.... .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4678999888888876531 11335779999999999999999999876433 333322221111 1
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh-------------hHHHhcCCCCC--CCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ-------------LDYLAGGLDQF--GPG 325 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~--~~g 325 (1007)
+... ..+...+....+..+.+|+||+++.... ...++..+... ..+
T Consensus 280 gese-------------------~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESE-------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHH-------------------HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHH-------------------HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1011 1122333334456789999999854310 22222221111 123
Q ss_pred CeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 037332 326 SKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYAFKGNHG-PEDLLVLSERVLYYANGNP 390 (1007)
Q Consensus 326 s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g~P 390 (1007)
..||.||...+.... ...++.++++..+.++-.+++..+.-+.... ..+ ...+++.+.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 344555554432221 1345789999999999999998766332211 122 345677777764
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.21 E-value=0.001 Score=80.81 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=83.3
Q ss_pred CCccchhhHHHHHHHHhccCC-------CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHH
Q 037332 193 DGLVGLNSRVEQIKSLLCIGL-------PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVR 265 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
..++|.+..++.+.+.+.... .....+.++|++|+|||++|+++++.....-...+.+ ++..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 468999999988887775321 1233789999999999999999999864332222333 333332222100
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCchh--hHHHhcCCCC-----------CCCCCeEEEEe
Q 037332 266 LRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVGQ--LDYLAGGLDQ-----------FGPGSKIIVTT 332 (1007)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~-----------~~~gs~iliTt 332 (1007)
...+...++. ...-+|+||+++.... ...+...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0111222222 2334889999965433 3333322211 11356888888
Q ss_pred CChh-----h----Hhh------cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 333 RDKR-----V----LDN------FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 333 R~~~-----v----~~~------~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
.... + ... ...+.++.+.+++.++..+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 7311 1 000 1233588899999988887776543
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.20 E-value=0.0025 Score=66.52 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
+++.|.++.+++|.+.+.. +-.-.+-++|+|++|+||||||+.++...... .+.+. ........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh-
Confidence 4567777777776654321 00111239999999999999999999875432 22222 11111100
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch-------------hhHHHhcCCCCC--CCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG-------------QLDYLAGGLDQF--GPGS 326 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs 326 (1007)
.....+. +.......-...+.++++|+++... ....+...+..+ ....
T Consensus 85 -~~~~~~~----------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 -VGESERA----------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp -THHHHHH----------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred -hhHHHHH----------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 1111000 0111111112356789999986421 112222222111 1234
Q ss_pred eEEEEeCChhhHhhc-----CcccEEEcCCCChhHHHHHHhhhh
Q 037332 327 KIIVTTRDKRVLDNF-----GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 327 ~iliTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
-++.+|..+++.... ..+..+.++..+.++-.+++..+.
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 456677766554321 356788999999999888887665
No 246
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.15 E-value=0.0048 Score=71.27 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=36.2
Q ss_pred ccchhhHHHHHHHHhcc----CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 195 LVGLNSRVEQIKSLLCI----GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.+|.+...+.+.+.+.. .......+.++|++|+||||||+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 68888777776554321 11235689999999999999999999877443
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.06 E-value=0.0023 Score=67.22 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=78.8
Q ss_pred CCCccchhhHHHHHHHHhcc--C-------C-CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 192 SDGLVGLNSRVEQIKSLLCI--G-------L-PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 192 ~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
.+.++|.+..++++.+.... . + .-.+-+.|+|++|+||||||+.++..... ..+.+. .........
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~ 114 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV 114 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHHh
Confidence 35678887776666554321 0 0 11123899999999999999999987642 122222 111100000
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCc------------hh----hHHHhcCCCCCC--
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKV------------GQ----LDYLAGGLDQFG-- 323 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~----~~~l~~~~~~~~-- 323 (1007)
.... ......++..-.....++|+|+++.. +. +..+...+..+.
T Consensus 115 --~~~~----------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 115 --GVGA----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --THHH----------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --hHHH----------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 0000 01111222222235679999998422 11 222332222111
Q ss_pred CCCeEEEEeCChhhHhh-----cCcccEEEcCCCChhHHHHHHhhhh
Q 037332 324 PGSKIIVTTRDKRVLDN-----FGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 324 ~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
....++.||..+++... ...+..++++..+.++-.+++..++
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 12334456665544321 1345688999999888888887665
No 248
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.04 E-value=0.00086 Score=57.99 Aligned_cols=72 Identities=4% Similarity=0.065 Sum_probs=52.8
Q ss_pred ccccEEEcCccccccCchhHHHHHHHHhCCCceEecCCCCCCCcchHHHHHHhhccceeEEEecCccccchhhHHHHHHH
Q 037332 17 YKFDVFLSFRGEDTRYNFTSHLFAALSRKKIKTFTDEELKRGDEISPAILNAIIGSKILVIIFSKNYASSKWCLDELVKI 96 (1007)
Q Consensus 17 ~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el~~~ 96 (1007)
.+|.+||||+.+| . .+.|...|...|+. |.| ..|+.|.++|++.++..+.|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999998 2 34455555555664 333 578899999999999999999999998766
Q ss_pred HHHHhcCCCeEEEEE
Q 037332 97 LECKNMNDQVVVPVF 111 (1007)
Q Consensus 97 ~~~~~~~~~~v~pvf 111 (1007)
.+ .+..++-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 334455543
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.85 E-value=0.0025 Score=77.23 Aligned_cols=149 Identities=23% Similarity=0.310 Sum_probs=84.3
Q ss_pred CCccchhhHHHHHHHHhcc-----------CCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhc-c
Q 037332 193 DGLVGLNSRVEQIKSLLCI-----------GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEK-E 260 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 260 (1007)
+.++|.+..++++.+++.. +-.....|.|+|++|+||||||+.++......| +..+....... .
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhhhh
Confidence 5689999999999887743 123345799999999999999999998764332 22221111100 0
Q ss_pred CcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCCCC
Q 037332 261 GVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQFGP 324 (1007)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 324 (1007)
+... ......+.........++++|+++... .+-.+...... ..
T Consensus 280 g~~~-------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 280 GESE-------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp THHH-------------------HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred hhHH-------------------HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 0000 111122233333457899999984221 11122222221 23
Q ss_pred CCeEEEEeCChhhHhh-c----CcccEEEcCCCChhHHHHHHhhhh
Q 037332 325 GSKIIVTTRDKRVLDN-F----GVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 325 gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
+..+|.||........ . .....+.+...+.++..+++..++
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4455666655432211 1 234567888888888888887665
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.75 E-value=0.0024 Score=67.88 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=34.4
Q ss_pred hHHHHHHHHhccCCC-CeEEEEEEecCCCcHHHHHHHHHHhhh-cccCceEEEE
Q 037332 200 SRVEQIKSLLCIGLP-VFRIVGIWGMGGIGKTTIAGAIFNQNF-REFEGKCFVA 251 (1007)
Q Consensus 200 ~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 251 (1007)
..++.+.+++..... ....+.|+|++|+|||+||.++++... ..-..+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445555543221 246788999999999999999999876 4433344443
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.0027 Score=77.33 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=37.9
Q ss_pred CCccchhhHHHHHHHHhccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46889999998887766421 1123478999999999999999999877
No 252
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.60 E-value=0.002 Score=62.62 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=33.9
Q ss_pred CCCCCCEEeccCCCCCC-----CchhhCCCCCcCEEEccCC---CCc-----cchhhhcCCCCCCEEeeecC
Q 037332 885 GLCSLTELDLKDCGIRE-----IPQDIGSVFALEKIDLSGN---NFE-----TLPASMKQLSRLRYLYLINC 943 (1007)
Q Consensus 885 ~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n---~l~-----~lp~~~~~l~~L~~L~L~~n 943 (1007)
.-.+|+.|+|++|.|+. +-+.+..-++|++|+|++| .+. .+-..+..-++|+.|+++.|
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33556666666666663 3445555566777777654 233 23344555667777777654
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.37 E-value=0.0031 Score=60.84 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=64.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHh--ccc--cccc--------Cc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEIL--DEN--IKIR--------TP 284 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~--~~~~--------~~ 284 (1007)
..|-|++-.|.||||.|-...-+...+=..+.++.-... ....+ -..+++.+.-.+. +.. .... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~g-E~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPNG-ERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCCH-HHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCcc-HHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 456677777799999999998876544333444432211 11111 2233333210000 000 0000 01
Q ss_pred chHHHHHHHhCCCcE-EEEEecCCCc-----hhhHHHhcCCCCCCCCCeEEEEeCChhhHhhcCcccEEEcCCC
Q 037332 285 NLSECIKKRLRQMDV-FIVLDDVNKV-----GQLDYLAGGLDQFGPGSKIIVTTRDKRVLDNFGVSNIYKVNGL 352 (1007)
Q Consensus 285 ~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L 352 (1007)
......++.+.+.+| |||||++... -..+.+...+..-.....||+|+|...-.-.--.+.+-++...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 122445566655555 9999998321 1122222222222356789999998743222123445555543
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.014 Score=56.07 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.8
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAI 236 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~ 236 (1007)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.27 E-value=0.0067 Score=72.24 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=77.6
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccC
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEG 261 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 261 (1007)
+.+.|.++.+++|.+.+... ....+-|.++|++|.|||.+|+++++.....| +.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~------- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGP------- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHH-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccc-------
Confidence 56778888888888765421 12245688999999999999999999764332 211111
Q ss_pred cHHHHHHHHHHHHhcccccccCcchHHHHHHHhCCCcEEEEEecCCCch----------------hhHHHhcCCCCCCCC
Q 037332 262 VLVRLRERILSEILDENIKIRTPNLSECIKKRLRQMDVFIVLDDVNKVG----------------QLDYLAGGLDQFGPG 325 (1007)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~~g 325 (1007)
. + ...........+...+...-+..+++|+||+++... ....|+..+......
T Consensus 546 ---~----l----~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 546 ---E----L----LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ---H----H----HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ---h----h----hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1 1 111111110112223333334578999999986431 023333322222222
Q ss_pred -CeEEE-EeCChhhHh-----hcCcccEEEcCCCChhHHHHHHhhhh
Q 037332 326 -SKIIV-TTRDKRVLD-----NFGVSNIYKVNGLENHEAFKLFCYYA 365 (1007)
Q Consensus 326 -s~ili-TtR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~a 365 (1007)
..+|| ||-.++... .-..++.+.++.-+.++-.++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22333 443332211 11356788888777777778887665
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.013 Score=72.04 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=38.1
Q ss_pred CccchhhHHHHHHHHhccC-----C--CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 194 GLVGLNSRVEQIKSLLCIG-----L--PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~-----~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.++|.+..++.+...+... + .....+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999888887776431 1 12357899999999999999999997643
No 257
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.97 E-value=0.0052 Score=64.23 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
..+++.|+|++|+||||||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999886
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.95 E-value=0.011 Score=59.36 Aligned_cols=25 Identities=24% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHH
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
..-.+++|+|.+|+||||||+.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999987
No 259
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.85 E-value=0.0065 Score=58.98 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=51.3
Q ss_pred ccCCCCCCCEEEeccccCc-----ccChhhhcCCCCCEEEecCCCCCc-----CCcccCCCCCCCEEeccCC---CCCC-
Q 037332 836 NLGSLKSLVYIEAERSAIS-----QVPASIAHLNEVKSLSFAGCRNLV-----LPTLLSGLCSLTELDLKDC---GIRE- 901 (1007)
Q Consensus 836 ~l~~l~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~L~~n---~l~~- 901 (1007)
.+..-++|+.|+|++|.+. .+-..+..-+.|+.|+|+.|.+.. +-..+..-.+|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3444455666666666555 223334455667777777666432 2233455567888888765 3342
Q ss_pred ----CchhhCCCCCcCEEEccCCCC
Q 037332 902 ----IPQDIGSVFALEKIDLSGNNF 922 (1007)
Q Consensus 902 ----lp~~l~~l~~L~~L~L~~n~l 922 (1007)
+...+..-++|+.|+++.|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 444566677888999887754
No 260
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.79 E-value=0.017 Score=62.29 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEE-EEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCF-VANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLR 295 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (1007)
.+++|+|+.|.||||+.+.+...+.......++ +.+..+...... . ..+...............+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~--------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K--------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c--------cceeeeeeccccCCHHHHHHHHhh
Confidence 599999999999999999998876544333332 221110000000 0 000000000111345668888898
Q ss_pred CCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhHh
Q 037332 296 QMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVLD 339 (1007)
Q Consensus 296 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~ 339 (1007)
..+=+|++|.+.+.+.++.+.... ..|..|++||-....+.
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 889999999999887776654432 24667888888766543
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.79 E-value=0.013 Score=52.95 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.6
Q ss_pred EEeccCCCCC--CCchhhCCCCCcCEEEccCCCCccchhh-hcCCCCCCEEeeecCCCC
Q 037332 891 ELDLKDCGIR--EIPQDIGSVFALEKIDLSGNNFETLPAS-MKQLSRLRYLYLINCYML 946 (1007)
Q Consensus 891 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~~l 946 (1007)
.++.++++++ .+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777776 677543 24677788888877777654 567777888888877654
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.73 E-value=0.038 Score=58.69 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
..++|+|+|.+|+||||++..++..++.. ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999999877654 3334443
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.66 E-value=0.0059 Score=65.11 Aligned_cols=40 Identities=18% Similarity=-0.036 Sum_probs=28.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecch
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVRE 255 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~ 255 (1007)
-..++|+|.+|+|||||++.+.+.+..+. +..+.+..+++
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 45899999999999999999988765433 33344444443
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.65 E-value=0.085 Score=55.50 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhccC------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 199 NSRVEQIKSLLCIG------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 199 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+.-.+++.+.+... .....+++|+|.+|+||||++..++..++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34455566666432 1245799999999999999999999877654
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.50 E-value=0.023 Score=56.15 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHhccC-CCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 198 LNSRVEQIKSLLCIG-LPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 198 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
|++.++++.+.+... .....+|+|.|..|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555667777666532 24467999999999999999999988664
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.45 E-value=0.015 Score=57.87 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
-+++|.+.+........+|+|+|+.|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445454433234567999999999999999999988765
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.43 E-value=0.012 Score=64.56 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=36.0
Q ss_pred ccchhhHHHHHHHHhc-------------cCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 195 LVGLNSRVEQIKSLLC-------------IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6888888888777662 1111345788999999999999999998763
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.40 E-value=0.018 Score=62.08 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+.++|++..++.+...+..+ .-+.++|++|+|||++|+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46899999999888877653 358899999999999999999876443
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.38 E-value=0.049 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999998764
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.38 E-value=0.02 Score=63.26 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=33.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERI 270 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (1007)
+.++|+|.+|+||||||..+......++...+.+..+++.... ..++.+.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGertte---v~el~~~l 202 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTRE---GNDLYHEM 202 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHH---HHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchH---HHHHHHHh
Confidence 3688999999999999999998776555444433344433222 44444444
No 271
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.36 E-value=0.14 Score=55.29 Aligned_cols=155 Identities=13% Similarity=-0.032 Sum_probs=95.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh-cccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF-REFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKR 293 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 293 (1007)
-.++..++|..|.||++.|+++...+. ..|+....+. .. ...+ +.++...+.. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~-~~~l~~~~~~-------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTD-WNAIFSLCQA-------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCC-HHHHHHHHHH-------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCC-HHHHHHHhcC-------------------cC
Confidence 356889999999999999999998764 3443221111 11 1122 4333333211 11
Q ss_pred hCCCcEEEEEecCCC---chhhHHHhcCCCCCCCCCeEEEEeCC-------hhhHhh-cCcccEEEcCCCChhHHHHHHh
Q 037332 294 LRQMDVFIVLDDVNK---VGQLDYLAGGLDQFGPGSKIIVTTRD-------KRVLDN-FGVSNIYKVNGLENHEAFKLFC 362 (1007)
Q Consensus 294 l~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iliTtR~-------~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~ 362 (1007)
+-+++-++|+|+++. .+.++.+...+....+++.+|++|.. ..+... .....+++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 235567889999865 34566676655544567777776643 233333 2234688999999999888887
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 037332 363 YYAFKGNHGPEDLLVLSERVLYYANGNPLALRV 395 (1007)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 395 (1007)
+.+-... .....+.+..+++.++|...++..
T Consensus 153 ~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 7663221 122345677888999998876654
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.32 E-value=0.016 Score=59.74 Aligned_cols=113 Identities=11% Similarity=0.109 Sum_probs=62.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
.-.+++|+|+.|+|||||++.+...+...+...+++.... .......... + +...............+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----I---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----E---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----e---eeHHHhCCCHHHHHHHHHHHH
Confidence 3469999999999999999999886654434445443210 0000000000 0 000000001123455666666
Q ss_pred CCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhhH
Q 037332 295 RQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRVL 338 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~ 338 (1007)
..++=++++|...+.+....+.... ..|..|++||-+..+.
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6667788999998666654433321 2466788888776543
No 273
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.28 E-value=0.018 Score=57.20 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998864
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.24 E-value=0.097 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.++++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999999876544
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.0096 Score=57.54 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|.|.|++|+||||+|+++..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.12 E-value=0.091 Score=55.89 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999866543
No 277
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.97 E-value=0.004 Score=75.50 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCccchhhHHHHHHHHhccC-----------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIG-----------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|.+..++++.+.+... -...+.+.++|++|+|||+||++++......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56789988888888776421 1223568899999999999999999987544
No 278
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.97 E-value=0.02 Score=57.11 Aligned_cols=109 Identities=16% Similarity=-0.027 Sum_probs=57.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccccccc---CcchHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIR---TPNLSECIKK 292 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~l~~ 292 (1007)
..++.|+|..|+||||++..++++...+-..++++....... + .. ++...++....... ..++.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~-~~----~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---S-IR----NIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---G-CS----SCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---H-HH----HHHHhcCCCccccccCCHHHHHHHHHH
Confidence 468899999999999999999988765543344432111100 1 00 11111111111100 1123333443
Q ss_pred HhCCCc-EEEEEecCCCc--hhhHHHhcCCCCCCCCCeEEEEeCCh
Q 037332 293 RLRQMD-VFIVLDDVNKV--GQLDYLAGGLDQFGPGSKIIVTTRDK 335 (1007)
Q Consensus 293 ~l~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~ 335 (1007)
.+.+.+ -+||+|.+... ++++.+... . ..|-.||+|-+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L-~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANIL-A--ENGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHH-H--HTTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHH-H--hCCCeEEEEeccc
Confidence 333344 49999998543 344443321 1 1367899998854
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.96 E-value=0.025 Score=63.91 Aligned_cols=45 Identities=22% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 36899999999888877554 3678999999999999999998763
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.84 E-value=0.038 Score=59.35 Aligned_cols=49 Identities=29% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 203 EQIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 203 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.+|-..|. .+-..-+++.|+|++|+||||||..++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34555554 33344579999999999999999999987654433455664
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.82 E-value=0.014 Score=55.95 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988753
No 282
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.79 E-value=0.053 Score=58.67 Aligned_cols=50 Identities=32% Similarity=0.293 Sum_probs=34.1
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 202 VEQIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 202 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
...|-.+|. .+-...+++.|+|.+|+||||||..++......-..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555553 22234468899999999999999999887654434566665
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.71 E-value=0.016 Score=57.17 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|+|+|++|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 284
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.036 Score=57.98 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 213 LPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.....+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345689999999999999999999886653
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.67 E-value=0.22 Score=55.21 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHHHHhccC-------CCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 201 RVEQIKSLLCIG-------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 201 ~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
-.+++.+++... ....++|.++|.+|+||||+|..++..++.+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344566666432 1346899999999999999999999887654
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.61 E-value=0.017 Score=56.17 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.|.|+|++|+||||+|+.++.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999876
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.58 E-value=0.021 Score=60.68 Aligned_cols=49 Identities=22% Similarity=0.163 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHhcc--CCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 196 VGLNSRVEQIKSLLCI--GLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
|+.+.-.+++.+.+.. ..+....|.|+|++|+||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4445555555555432 234456799999999999999999998765544
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.58 E-value=0.15 Score=56.27 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+|.++|.+|+||||++.+++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876554
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.55 E-value=0.13 Score=57.38 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
...+++|+|..|+|||||++.++..++.. ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999876543 3344443
No 290
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.54 E-value=0.055 Score=59.90 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=36.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc-cCceEEEEecchhhhccCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE-FEGKCFVANVREESEKEGVLVRLRERILS 272 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 272 (1007)
-+-++|.|.+|+|||+|+..+.+.+... -+.++|+ .+++-... ..++.+.+..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~rE---v~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERTRE---GNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCSHH---HHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCcHH---HHHHHHhhhc
Confidence 3578999999999999999999986443 3444554 44443322 5566666654
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.51 E-value=0.027 Score=61.92 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 292
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.48 E-value=0.027 Score=57.46 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.-.+++|+|++|+||||||+.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34699999999999999999998853
No 293
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.44 E-value=0.027 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.011 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.++.|+|+.|+||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999987777654
No 294
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.42 E-value=0.066 Score=58.96 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecchhhhccCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVREESEKEGVLVRLRERILS 272 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 272 (1007)
-+-++|.|.+|+|||+|+..+.+.+.... +.++| ..+++-... +.++.+.+..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~-~~iGER~rE---v~e~~~~~~~ 206 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF-AGVGERTRE---GNDLYHEMIE 206 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEE-EEESCCHHH---HHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEE-EECCCcchH---HHHHHHHhhh
Confidence 35789999999999999999999764433 43444 344443322 5566666654
No 295
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.37 E-value=0.22 Score=55.84 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=38.4
Q ss_pred HHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEEecchhhhccCcHHHHHHHHHHH
Q 037332 204 QIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVANVREESEKEGVLVRLRERILSE 273 (1007)
Q Consensus 204 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1007)
.+-+++ .+-....++.|.|.+|+||||+|..++........ .++|+. . ... ..++...+...
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E~~-~~~l~~R~~~~ 251 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----EMP-AAQLTLRMMCS 251 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----SSC-HHHHHHHHHHH
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----CCC-HHHHHHHHHHH
Confidence 343444 33334468999999999999999999987654322 345543 2 122 44555555543
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.062 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 297
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.36 E-value=0.063 Score=57.87 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+-.+|..+-....++.|+|.+|+||||||..++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334443333456799999999999999999998864
No 298
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.049 Score=49.16 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=37.9
Q ss_pred EEEecCCCCC--CCCCCCCccccceeeCCCCCccccccc-cccccccceeeccCCcC
Q 037332 591 YFHWHGYPLK--TLPFNFDPENLIELNLPHSKIKQIWEG-KKEAFKLKSIDLRYSQY 644 (1007)
Q Consensus 591 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~ 644 (1007)
.++.+++.++ .+|..+ +.+|++|+|++|+|+.++.. +..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5667777777 777553 45688888888888888654 46677777777777754
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.039 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.+|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 300
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.32 E-value=0.18 Score=52.96 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987654
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.22 E-value=0.026 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.22 E-value=0.045 Score=53.90 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...+|+|+|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999998775
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.22 E-value=0.038 Score=56.33 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
....|+|.|++|+||||+|+.+..++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.19 E-value=0.071 Score=57.00 Aligned_cols=106 Identities=18% Similarity=0.060 Sum_probs=59.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHhCC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRLRQ 296 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (1007)
.+++|+|..|.|||||++.+..-+.. -...+.+....+.... . .. ..+.-... ........+...|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~-~~-------~~i~~~~g--gg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-H-HK-------NYTQLFFG--GNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-S-CS-------SEEEEECB--TTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-c-ch-------hEEEEEeC--CChhHHHHHHHHhhh
Confidence 48999999999999999999876533 2344555432211000 0 00 00000000 113445667777887
Q ss_pred CcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhh
Q 037332 297 MDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRV 337 (1007)
Q Consensus 297 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v 337 (1007)
++=++++|++.+.+.++.+... . ..+..+|+||.....
T Consensus 240 ~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGSS 277 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSSH
T ss_pred CCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEcccHH
Confidence 8889999999886655544332 2 112235666654443
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.16 E-value=0.042 Score=53.21 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=32.9
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
|....-+..+..++.. -+..+.+.|+|++|+||||+|.++++.+..
T Consensus 39 ~~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 39 IEFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CCHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344446666666643 233456899999999999999999998754
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.13 E-value=0.026 Score=53.81 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|.|+.|+||||+|+.+..++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.12 E-value=0.14 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987653
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.12 E-value=0.1 Score=56.85 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=62.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
...+++|+|+.|+||||+++.+...+.......+.+... .. ... ... .+ .-+...............++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e~~-~~~---~~-~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--EYV-FKH---KK-SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--CSC-CCC---SS-SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--hhh-hcc---Cc-eEEEeeecCCCHHHHHHHHHHHh
Confidence 346899999999999999999988665432344433211 00 000 000 00 00000000001134566778888
Q ss_pred CCCcEEEEEecCCCchhhHHHhcCCCCCCCCCeEEEEeCChhh
Q 037332 295 RQMDVFIVLDDVNKVGQLDYLAGGLDQFGPGSKIIVTTRDKRV 337 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v 337 (1007)
...+=+|++|.+.+.+.+....... ..|..|+.|+-...+
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 7777799999998777655433321 346667777765543
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.12 E-value=0.044 Score=51.76 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.++++|.|..|+|||||+.++...++.+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999987654
No 310
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.11 E-value=0.027 Score=55.02 Aligned_cols=24 Identities=42% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
..+++|+|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 311
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.10 E-value=0.039 Score=59.12 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...++.|+|.+|+||||||..++....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 346899999999999999999987653
No 312
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.06 E-value=0.022 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|+|+.|+||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.04 E-value=0.049 Score=52.92 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...+|.|.|++|+||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999998754
No 314
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.03 E-value=0.035 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.00 E-value=0.023 Score=54.91 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
|.|.|+|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999987654433
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.00 E-value=0.022 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|.|.|++|+||||+|+.+..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998875
No 317
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=93.90 E-value=0.25 Score=45.93 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=67.9
Q ss_pred ccccccCchhHHHHHHHHhCCCceEecC-CCC-------C-CCcchHHHHHHhhccceeEEEecCccccchhhHHHHHHH
Q 037332 26 RGEDTRYNFTSHLFAALSRKKIKTFTDE-ELK-------R-GDEISPAILNAIIGSKILVIIFSKNYASSKWCLDELVKI 96 (1007)
Q Consensus 26 ~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~-------~-g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~~c~~el~~~ 96 (1007)
..+|. .....|.+.-....+-.|.|. +.. . -+.|...+.+.|..|+.+|+++|++...|+|-.+|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 34443 455677777777666667775 442 2 346888999999999999999999999999999998777
Q ss_pred HHHHhcCCCeEEEEEEeeC-CCccccccCchHHHHH
Q 037332 97 LECKNMNDQVVVPVFYHVD-PSDVRKQTGSFGDAFS 131 (1007)
Q Consensus 97 ~~~~~~~~~~v~pvf~~v~-~~~vr~~~~~~~~~~~ 131 (1007)
.. ..+.+||-|.-+-+ .++++...|.+.....
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~ 137 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIK 137 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHH
T ss_pred HH---hcCCcEEEEECCccccchhhhccccchhhHh
Confidence 62 23455777664322 2244444555544443
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.88 E-value=0.069 Score=56.45 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=34.0
Q ss_pred ccchhhHHHHHHHHhccC--CCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 195 LVGLNSRVEQIKSLLCIG--LPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|-...+..+...+... .....+|+|.|..|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555666555544333 34567999999999999999999887654
No 319
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.88 E-value=0.027 Score=61.25 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCCCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 191 DSDGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 191 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+.++|.+..++.+....... ...-|.|+|++|+|||++|+++++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899988666554443221 122388999999999999999998654
No 320
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.86 E-value=0.029 Score=54.19 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 321
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.86 E-value=0.055 Score=57.28 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+..+||+|+|-||+||||.|..++.-+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 357999999999999999999888876543
No 322
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.85 E-value=0.014 Score=62.04 Aligned_cols=50 Identities=20% Similarity=0.010 Sum_probs=32.6
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEEecch
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVANVRE 255 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~ 255 (1007)
+++.+..- ..-+-++|+|.+|+|||+|+..+++.+..+. +..+++..+++
T Consensus 165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred hhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 44554321 2335789999999999999999999765433 33444444543
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.85 E-value=0.033 Score=57.16 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++|.|.|++|+||||||+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998865
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.81 E-value=0.27 Score=54.18 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|+++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999877554
No 325
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.77 E-value=0.27 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...+++|+|+.|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999987654
No 326
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.75 E-value=0.18 Score=55.93 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.++|+|+|.+|+||||+|.+++.....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876544
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.73 E-value=0.033 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 328
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.72 E-value=0.054 Score=56.35 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhccc--CceEEEE
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFREF--EGKCFVA 251 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 251 (1007)
++.|+|++|+||||||..++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999888765542 3345554
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.71 E-value=0.033 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998753
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.66 E-value=0.031 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 331
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.65 E-value=0.06 Score=59.45 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=35.8
Q ss_pred CccchhhHHHHHHHHhccC------------CCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 194 GLVGLNSRVEQIKSLLCIG------------LPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.++|.+..++.+..++... ....+-|.++|++|+||||+|++++..+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5778887777776555210 112356889999999999999999987643
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.63 E-value=0.042 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.58 E-value=0.032 Score=54.26 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765433
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.52 E-value=0.03 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+|+|.|++|+||||+|+.+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.51 E-value=0.074 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.46 E-value=0.041 Score=54.20 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|+.|+||||+|+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.45 E-value=0.041 Score=53.96 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|++|+||||+|+.+..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 338
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.42 E-value=0.53 Score=52.88 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 251 (1007)
...++.|.|.+|+||||+|..++..+..... .++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3468999999999999999999987654323 345553
No 339
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.40 E-value=0.15 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++|.|++|+||||+|+.+..++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998865
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.39 E-value=0.046 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...|+|.|++|+||||+|+.+..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 341
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.38 E-value=0.13 Score=55.82 Aligned_cols=41 Identities=27% Similarity=0.217 Sum_probs=30.7
Q ss_pred HHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 202 VEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 202 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
..++.+.+........+|+|+|.+|+|||||+..+...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44445555434456789999999999999999999887644
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.38 E-value=0.047 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+|+|.|++|+||||+|+.+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.37 E-value=0.044 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|+|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988754
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.36 E-value=0.069 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.+|+|.|++|+||||+|+.+..++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999977543
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.32 E-value=0.05 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|.|+.|+||||+|+.++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.31 E-value=0.035 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++|.|.|++|+||||+|+.+..++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 347
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.31 E-value=0.046 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.29 E-value=0.069 Score=53.19 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..+|+|.|+.|+||||+|+.+..++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987544
No 349
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.29 E-value=0.047 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.29 E-value=0.044 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|.|++|+||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998753
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.27 E-value=0.049 Score=51.85 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.|+|.|++|+||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988753
No 352
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.23 E-value=0.037 Score=54.79 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.++|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988753
No 353
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.23 E-value=0.19 Score=53.37 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=31.6
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
|-+++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+.
T Consensus 58 LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 58 LDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp HHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 33444 33334468999999999999999999876544334455554
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.23 E-value=0.035 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|.|.|++|+||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.15 E-value=0.056 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|++|+||||+|+.+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.06 E-value=0.049 Score=52.99 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987643
No 357
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.06 E-value=0.099 Score=56.28 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=33.3
Q ss_pred HHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.+-.+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4445554 23234568999999999999999999886654433456654
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.05 E-value=0.054 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.03 E-value=0.057 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
....+|+|+|++|+||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998753
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.01 E-value=0.061 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 361
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.97 E-value=0.044 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIF 237 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~ 237 (1007)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 362
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.97 E-value=0.32 Score=54.75 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=23.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
+.+.|.|.+|.||||++.++...+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3889999999999999999998765543
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.94 E-value=0.055 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.93 E-value=0.054 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 037332 218 IVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.91 E-value=0.06 Score=55.57 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 366
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.90 E-value=0.053 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998653
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.90 E-value=0.052 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..|.|.|++|+||||+|+.++.++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998875
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.89 E-value=0.061 Score=55.24 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 369
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.88 E-value=0.054 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.88 E-value=0.083 Score=54.20 Aligned_cols=27 Identities=26% Similarity=0.115 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...+|.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988753
No 371
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.83 E-value=0.096 Score=56.01 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=26.6
Q ss_pred HHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 205 IKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 205 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+-.+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334443332345799999999999999999988753
No 372
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.81 E-value=0.4 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+++.|.|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 688899999999999999998876544
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.80 E-value=0.06 Score=53.55 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..+|+|.|+.|+||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 374
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.79 E-value=0.065 Score=53.27 Aligned_cols=27 Identities=33% Similarity=0.239 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...+|+|+|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.78 E-value=0.061 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
+|+|.|+.|+||||+|+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 376
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.73 E-value=0.06 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|+|+.|+||||+++.++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 377
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.73 E-value=0.059 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.64 E-value=0.071 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|.|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998763
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.52 E-value=0.066 Score=52.97 Aligned_cols=22 Identities=50% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.47 E-value=0.11 Score=54.76 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...+++|+|++|+||||+++.++..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35699999999999999999999866543
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.47 E-value=0.045 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 382
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.44 E-value=0.098 Score=57.57 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++++|+|.+|+||||++..++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999877654
No 383
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.40 E-value=0.24 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999886543
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.37 E-value=0.06 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.028 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 385
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.36 E-value=0.055 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 386
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.35 E-value=0.27 Score=47.54 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|+|++|+||+|+|..+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 34799999999999999999887654
No 387
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.35 E-value=0.068 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...|.|.|++|+||||+|+.+..++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998864
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.33 E-value=0.07 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+|+|.|+.|+||||+++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999875
No 389
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.33 E-value=0.057 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998753
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.31 E-value=0.088 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|.|+.|+||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.28 E-value=0.1 Score=52.69 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=26.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
-.+++|+|.+|+|||||++.++......-..+.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999999999997654332334444
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.28 E-value=0.078 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.26 E-value=0.077 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 394
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.12 Score=52.83 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999998876544333455554
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.21 E-value=0.15 Score=50.98 Aligned_cols=44 Identities=23% Similarity=0.108 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 198 LNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 198 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
.++..+.+.+.+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33444445444422 246799999999999999999998876444
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.12 E-value=0.24 Score=49.58 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
....|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998875443
No 397
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.11 E-value=0.13 Score=57.17 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=49.3
Q ss_pred EEEEEEecCCCcHHHHHH-HHHHhhhc------ccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCc
Q 037332 217 RIVGIWGMGGIGKTTIAG-AIFNQNFR------EFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTP 284 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~-~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~ 284 (1007)
+-++|.|.+|+|||+||. .+.+.... +-+.++.+..+++-... +.++.+.+...-.-... ..+..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~E---v~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRST---VAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHH---HHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHH---HHHHHHHHHhcCCcccceEEEECCCCC
Confidence 568899999999999964 56665442 24444555555543332 55555555432110000 00000
Q ss_pred ---c-----hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 285 ---N-----LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 285 ---~-----~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
. ..-.+.+++ +++.+|+++||+...
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 0 111233444 578999999998433
No 398
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.10 E-value=1.6 Score=47.25 Aligned_cols=48 Identities=27% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..++|....+.++.+.+..-......|.|+|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 568888877777766553221222346799999999999999987653
No 399
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.07 E-value=0.084 Score=55.84 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
....+|+|.|..|+|||||++.+..-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4467999999999999999999988654
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.04 E-value=0.099 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998764
No 401
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.99 E-value=0.1 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..-.+++|+|+.|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998743
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.99 E-value=0.082 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 403
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.95 E-value=0.14 Score=52.02 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 201 RVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 201 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-...+..++....+....|.++|++|.|||.+|.++++.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 345577777654344567999999999999999999985
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.94 E-value=0.091 Score=55.70 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 405
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.93 E-value=0.29 Score=52.08 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=34.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSE 273 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1007)
...++.|.|.+|+||||+|..++......-..++|+. . ... ..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-----Ems-~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-----EMS-AEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-----SSC-HHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-----CCC-HHHHHHHHHHH
Confidence 3458899999999999999999987654323344543 1 222 45555555443
No 406
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.91 E-value=0.14 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.-.+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999999865
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.89 E-value=0.09 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+|+|.|++|+||||+|+.+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.88 E-value=0.077 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..|+|.|+.|+||||+|+.+..++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 409
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.84 E-value=0.083 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.84 E-value=0.14 Score=55.46 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 203 EQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 203 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+.+-+..+-...++++|+|++|.|||||++.++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33444443333455799999999999999999999754
No 411
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.83 E-value=0.34 Score=53.72 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEEEecCCCcHHHHHH-HHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCcc-----
Q 037332 217 RIVGIWGMGGIGKTTIAG-AIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTPN----- 285 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~----- 285 (1007)
+-++|.|.+|+|||+||. .+.+.. +.+..+.+..+++-... +.++.+.+...-.-... ..+...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~E---v~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKSA---IARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHHH---HHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcHH---HHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 468899999999999965 666654 34444444445443332 55566665432111100 000000
Q ss_pred ---hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 286 ---LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 286 ---~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
..-.+.+++ +++.+|+++||+...
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 112233444 578999999998433
No 412
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.82 E-value=0.17 Score=56.13 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHH-HHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCcc----
Q 037332 216 FRIVGIWGMGGIGKTTIAG-AIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTPN---- 285 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~---- 285 (1007)
-+-++|.|.+|+|||+||. .+.+.. +.+..+.+..+++-... +.++.+.+...-.-... ..+...
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~E---v~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQST---VAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHHH---HHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcchH---HHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3568899999999999965 666654 34444444445443322 55555555442111100 000000
Q ss_pred ----hHHHHHHHh--CCCcEEEEEecCCC
Q 037332 286 ----LSECIKKRL--RQMDVFIVLDDVNK 308 (1007)
Q Consensus 286 ----~~~~l~~~l--~~kr~LlVlDdv~~ 308 (1007)
..-.+.+++ +++.+|+++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 012233444 57899999999843
No 413
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.77 E-value=0.26 Score=54.00 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=49.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc---cCceEEEEecchhhhccCcHHHHHHHHHHHH-hccc----ccccCcc---
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE---FEGKCFVANVREESEKEGVLVRLRERILSEI-LDEN----IKIRTPN--- 285 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~----~~~~~~~--- 285 (1007)
+-++|.|..|+|||+|+..+++....+ -+.++.+..+++-... +.++.+.+...- .... ...+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~E---v~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEE---AEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHH---HHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHH---HHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 357899999999999999998875442 2224444444443322 555666554421 1100 0000010
Q ss_pred -----hHHHHHHHhC---CCcEEEEEecCCC
Q 037332 286 -----LSECIKKRLR---QMDVFIVLDDVNK 308 (1007)
Q Consensus 286 -----~~~~l~~~l~---~kr~LlVlDdv~~ 308 (1007)
..-.+.++++ ++++|+++||+..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1123445543 7899999999853
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.74 E-value=0.087 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 415
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.74 E-value=0.14 Score=60.01 Aligned_cols=47 Identities=30% Similarity=0.311 Sum_probs=39.1
Q ss_pred CCccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 193 DGLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 193 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 46899999888888877654 478999999999999999999876443
No 416
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.71 E-value=1.7 Score=47.44 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=33.1
Q ss_pred CccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 194 GLVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 194 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|....++++.+.+..-...-..|.|.|.+|+|||++|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 57777777777766554322222235899999999999999988753
No 417
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.71 E-value=0.1 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|.|+.|+||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.64 E-value=0.16 Score=48.36 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987653
No 419
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.62 E-value=0.15 Score=54.97 Aligned_cols=48 Identities=33% Similarity=0.411 Sum_probs=33.3
Q ss_pred HHHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 204 QIKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 204 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
.|-.+|. .+-...+++.|+|.+|+||||||..++......-..++|+.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444553 23234568999999999999999999887654434466665
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.56 E-value=0.11 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 421
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.55 E-value=0.073 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.52 E-value=0.11 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.51 E-value=0.084 Score=55.72 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999865
No 424
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.48 E-value=0.099 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999864
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.38 E-value=0.11 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.37 E-value=0.11 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.|.|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 427
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.37 E-value=0.15 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999998853
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.35 E-value=0.11 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..|.|.|++|+||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998753
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.28 E-value=0.57 Score=53.36 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhccc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREF 244 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 244 (1007)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998775444
No 430
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.27 E-value=0.13 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 431
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.26 E-value=0.1 Score=51.99 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 432
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.25 E-value=0.1 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhh
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 433
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.22 E-value=0.075 Score=50.53 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
++++|+|..|+|||||++.+..-+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.15 E-value=0.18 Score=49.74 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=22.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcc-cC
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFRE-FE 245 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~-f~ 245 (1007)
.|.+.|.||+||||+|..++.....+ ++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~ 36 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVR 36 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCC
Confidence 47789999999999999999876544 44
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.09 E-value=0.12 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998764
No 436
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.03 E-value=0.14 Score=56.74 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=47.6
Q ss_pred eEEEEEEecCCCcHHHHHH-HHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhccc--------ccccCcc-
Q 037332 216 FRIVGIWGMGGIGKTTIAG-AIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDEN--------IKIRTPN- 285 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~- 285 (1007)
-+-++|.|.+|+|||+||. .+.+... .+..+.+..+++-... +.++.+.+...-.-.. .......
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~E---v~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKASS---VAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHHH---HHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCchH---HHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3568899999999999965 6666532 4545455445443322 4455555433110000 0000011
Q ss_pred ----hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 286 ----LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 286 ----~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
..-.+.+++ +++.+|+++||+...
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 111223333 589999999998543
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.01 E-value=0.21 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998766
No 438
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.96 E-value=0.5 Score=52.65 Aligned_cols=37 Identities=16% Similarity=-0.080 Sum_probs=27.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFV 250 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 250 (1007)
....++.|.|.+|+||||+|..++.....+-..++|+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 3446899999999999999999998765442234444
No 439
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.86 E-value=0.31 Score=53.74 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=48.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhccc---CceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCc----
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREF---EGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTP---- 284 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~---- 284 (1007)
+-++|.|.+|+|||+|+..+++...... +.++.+..+++-... +.++.+.+...-.-... ..+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~E---v~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEE---AQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHH---HHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHH---HHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 4678899999999999999998754321 234444445443322 55566665432111100 00000
Q ss_pred ----chHHHHHHHh---CCCcEEEEEecC
Q 037332 285 ----NLSECIKKRL---RQMDVFIVLDDV 306 (1007)
Q Consensus 285 ----~~~~~l~~~l---~~kr~LlVlDdv 306 (1007)
...-.+.+++ +++.+|+++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0112234444 369999999997
No 440
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.86 E-value=0.21 Score=52.92 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356899999999999999999999877654
No 441
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.84 E-value=0.28 Score=53.71 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc----------ccCceEEEEecchhhhccCcHHHHHHHHHHHH-hccc----ccc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR----------EFEGKCFVANVREESEKEGVLVRLRERILSEI-LDEN----IKI 281 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~----------~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~----~~~ 281 (1007)
+-++|.|.+|+|||+|+..+++.... +-+..+.+..+++-... +.++.+.+...- .... ...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~E---v~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRE---LSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHH---HHHHHHHHHHTSGGGGEEEEEEET
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHH---HHHHHHHhhhcccccceEEEEECC
Confidence 46789999999999999999886432 12224444445443322 555555554321 0000 000
Q ss_pred cCcc--------hHHHHHHHh---CCCcEEEEEecCCC
Q 037332 282 RTPN--------LSECIKKRL---RQMDVFIVLDDVNK 308 (1007)
Q Consensus 282 ~~~~--------~~~~l~~~l---~~kr~LlVlDdv~~ 308 (1007)
+... ..-.+.+++ +++.+|+++||+..
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0011 112344554 36899999999843
No 442
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.71 E-value=0.4 Score=54.03 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++|+|+|.+|+||||++.+++..++.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999877654
No 443
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.71 E-value=0.24 Score=51.31 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999877654
No 444
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.70 E-value=0.21 Score=52.61 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=27.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcccC-ceEEE
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFREFE-GKCFV 250 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~ 250 (1007)
-.+++|.|.+|+|||||++.++..+..... .++|+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 458999999999999999999987654433 34444
No 445
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.70 E-value=2.2 Score=44.19 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
....|+++|.+|+|||||...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 345788999999999999998874
No 446
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.52 E-value=0.16 Score=53.79 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
....+|+|.|..|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 447
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.52 E-value=0.23 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
..++++|+|.+|+||||++..++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876544
No 448
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.49 E-value=0.42 Score=46.58 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhcccCceEE
Q 037332 218 IVGIWGMGGIGKTTIAGAIFNQNFREFEGKCF 249 (1007)
Q Consensus 218 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 249 (1007)
.|+|-|.-|+||||.++.+++.++.+-..+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47889999999999999999988765433443
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.49 E-value=0.15 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998874
No 450
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.43 E-value=0.43 Score=51.27 Aligned_cols=29 Identities=28% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
....+|+|+|.+|+||||++..+......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999876543
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.36 E-value=0.14 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.|.|.|+.|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998764
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.35 E-value=0.094 Score=54.90 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
..+|+|.|..|+||||+|+.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.33 E-value=0.24 Score=48.69 Aligned_cols=29 Identities=21% Similarity=0.530 Sum_probs=25.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcccC
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFREFE 245 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 245 (1007)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998876554
No 454
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.27 E-value=0.092 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=16.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHH-Hhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIF-NQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 240 (1007)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 455
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.27 E-value=0.12 Score=50.86 Aligned_cols=23 Identities=43% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998864
No 456
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.24 E-value=0.14 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.. .+++|+|+.|.|||||.+.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999999863
No 457
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.12 E-value=2.3 Score=42.77 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=27.8
Q ss_pred cchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 196 VGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 196 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.=++.+.+.+..++.. +-+.|+|..|.|||.+|..+....
T Consensus 93 ~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3345555555555532 127789999999999999888764
No 458
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.04 E-value=0.14 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+++|+|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 459
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.00 E-value=0.24 Score=55.76 Aligned_cols=48 Identities=4% Similarity=-0.100 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 195 LVGLNSRVEQIKSLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 195 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...|.+-.+.+.+..........+|.+.|+.|+||||+|++++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 334443344444433211234478999999999999999999998764
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.98 E-value=0.28 Score=51.10 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
-.++.|+|.+|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999875543
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.94 E-value=0.19 Score=50.42 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
....|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999998765
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.88 E-value=0.17 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 463
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.84 E-value=0.14 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|+.|+|||||++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 464
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.75 E-value=0.3 Score=51.17 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
++|+|.|.||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 688889999999999999999877644
No 465
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.71 E-value=1.3 Score=50.38 Aligned_cols=38 Identities=8% Similarity=-0.130 Sum_probs=28.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhccc-CceEEEE
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFREF-EGKCFVA 251 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~ 251 (1007)
..-.++.|.|.+|+||||+|..++.....+. ..++|+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 3446889999999999999999998776542 3355554
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.60 E-value=0.2 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 467
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.57 E-value=0.58 Score=51.73 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred EEEEEEecCCCcHHHHHH-HHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccc-----cccCcc-----
Q 037332 217 RIVGIWGMGGIGKTTIAG-AIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENI-----KIRTPN----- 285 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~----- 285 (1007)
+-++|.|..|+|||+||. .+.+. .+-+..+.+..+++-... +.++.+.+...-.-... ..+...
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR~~e---v~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQKAST---ISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCCHHH---HHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCChHH---HHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 467899999999999974 56554 234444444445443322 55566655432111100 000000
Q ss_pred ---hHHHHHHHh--CCCcEEEEEecCCCc
Q 037332 286 ---LSECIKKRL--RQMDVFIVLDDVNKV 309 (1007)
Q Consensus 286 ---~~~~l~~~l--~~kr~LlVlDdv~~~ 309 (1007)
..-.+.+++ +++.+|+++||+...
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 111223333 589999999998433
No 468
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.56 E-value=0.47 Score=50.78 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
....+++|+|++|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999876543
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.42 E-value=0.22 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
...|+|.|..|+||||+|+.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 470
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.34 E-value=0.16 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
-.+++|+|+.|+|||||++.++--.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998643
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.27 E-value=0.16 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+++|+|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.22 E-value=0.23 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 473
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.20 E-value=0.19 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||++.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 474
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.16 E-value=0.17 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998764
No 475
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.14 E-value=0.22 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 476
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.14 E-value=0.32 Score=49.56 Aligned_cols=36 Identities=31% Similarity=0.181 Sum_probs=25.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhh-hcccCceEEE
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQN-FREFEGKCFV 250 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~ 250 (1007)
.-.++.|.|.+|+|||++|..++... ...-..++|+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 34689999999999999999977653 3333334444
No 477
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.11 E-value=0.26 Score=53.11 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=26.6
Q ss_pred HHhccCCCCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 207 SLLCIGLPVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 207 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+|..+-..-.++.|+|++|+|||||++.++...
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3443333456899999999999999999998865
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.09 E-value=0.17 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|+.|+|||||.+.++--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998753
No 479
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.98 E-value=0.2 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|+.|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998874
No 480
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.94 E-value=0.15 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.94 E-value=0.18 Score=51.12 Aligned_cols=22 Identities=45% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
.+++|+|+.|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.92 E-value=0.18 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||++.++--
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998764
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.92 E-value=0.25 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=23.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNF 241 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~ 241 (1007)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999864
No 484
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.91 E-value=0.27 Score=51.37 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhh
Q 037332 214 PVFRIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
+.-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344689999999999999999998765
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.85 E-value=0.18 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|+.|+|||||++.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999998763
No 486
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.80 E-value=0.2 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|+.|.|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.76 E-value=0.18 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||.+.++--
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.75 E-value=0.41 Score=47.29 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=24.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhhhcc
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQNFRE 243 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 243 (1007)
...|.|.|+.|+||||+++.+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999987654
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.74 E-value=0.19 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQN 240 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~ 240 (1007)
.+++|+|+.|.|||||.+.++--.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 490
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.65 E-value=0.19 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.+++|+|+.|.|||||++.++--
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998763
No 491
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.59 E-value=2.6 Score=42.25 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
+.+.|.|..|.||||+...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5789999999999987765543
No 492
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.58 E-value=0.28 Score=64.00 Aligned_cols=47 Identities=34% Similarity=0.418 Sum_probs=32.9
Q ss_pred HHHHhc-cCCCCeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEE
Q 037332 205 IKSLLC-IGLPVFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVA 251 (1007)
Q Consensus 205 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 251 (1007)
+-.+|. .+-...++|.|+|++|+|||+||.++......+=...+|+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 445554 22234579999999999999999999887654433455554
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.56 E-value=0.34 Score=55.35 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
...+++|+|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999998754
No 494
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.55 E-value=0.2 Score=51.27 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
-.+++|+|+.|.|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 495
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.36 E-value=0.96 Score=44.19 Aligned_cols=111 Identities=13% Similarity=-0.038 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhhhcccCceEEEEecchhhhccCcHHHHHHHHHHHHhcccccccCcchHHHHHHHh
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFNQNFREFEGKCFVANVREESEKEGVLVRLRERILSEILDENIKIRTPNLSECIKKRL 294 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l 294 (1007)
...+..++|.-|.||||.|.....+...+-..++++.... ....+ ...+...+... ......... ..+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~g-e~~i~s~~g~~----~~a~~~~~~-~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYS-EEDVVSHNGLK----VKAVPVSAS-KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSG-GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcch-HHHHHhhcCCe----eEEeecCCH-HHHHHHH
Confidence 3478889999999999999988887655433344332111 11111 12222222111 110000111 1122222
Q ss_pred CCCcEEEEEecCCC--chhhHHHhcCCCCCCCCCeEEEEeCChh
Q 037332 295 RQMDVFIVLDDVNK--VGQLDYLAGGLDQFGPGSKIIVTTRDKR 336 (1007)
Q Consensus 295 ~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtR~~~ 336 (1007)
.++--+|++|.+.- .++++.+.... ..|-.||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 23334999998843 34554443211 23778999999653
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.35 E-value=0.23 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHH
Q 037332 215 VFRIVGIWGMGGIGKTTIAGAIFN 238 (1007)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLA~~~~~ 238 (1007)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 497
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.34 E-value=0.2 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
-.+++|+|+.|.|||||++.++--
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998764
No 498
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.25 E-value=0.21 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhhc
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQNFR 242 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 242 (1007)
.+++|+|+.|.|||||.+.++--...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 58999999999999999998865443
No 499
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.24 E-value=0.24 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHh
Q 037332 216 FRIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 216 ~~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 500
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.23 E-value=0.3 Score=45.60 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 037332 217 RIVGIWGMGGIGKTTIAGAIFNQ 239 (1007)
Q Consensus 217 ~vv~I~G~gGiGKTtLA~~~~~~ 239 (1007)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
Done!