BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037333
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X89|A Chain A, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
pdb|2X89|B Chain B, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
pdb|2X89|C Chain C, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
Length = 128
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 9 VSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPIND 54
V GS L + G + +RY W+ P K WVA RIN D
Sbjct: 12 VQAGGSLRLSCAASGYTDSRYCMAWFRQAPGKEREWVA-RINSGRD 56
>pdb|1UB6|H Chain H, Crystal Structure Of Antibody 19g2 With Sera Ligand
pdb|1UB6|A Chain A, Crystal Structure Of Antibody 19g2 With Sera Ligand
Length = 208
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
L G LV GS +L + G + +RY+ W +P K + WVA+
Sbjct: 4 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 49
>pdb|1UB5|H Chain H, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|A Chain A, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 209
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
L G LV GS +L + G + +RY+ W +P K + WVA+
Sbjct: 5 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|1FL3|H Chain H, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
pdb|1FL3|A Chain A, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
Length = 208
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
L G LV GS +L + G + +RY+ W +P K + WVA+
Sbjct: 4 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 49
>pdb|3LS4|H Chain H, Crystal Structure Of Anti-Tetrahydrocannabinol Fab
Fragment With Thc
pdb|3LS5|H Chain H, Anti-Tetrahydrocannabinol Fab Fragment, Free Form
Length = 219
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS +L + G + N YV +W P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFNNYVMVWLRQTPEKRLEWVAS 50
>pdb|3OGO|E Chain E, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|F Chain F, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|G Chain G, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|H Chain H, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 123
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA 46
+ G LV GS L + G NRY WY P K WVA
Sbjct: 6 VESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVA 50
>pdb|3K1K|C Chain C, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|D Chain D, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 123
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA 46
+ G LV GS L + G NRY WY P K WVA
Sbjct: 7 VESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVA 51
>pdb|2ZKR|ZZ Chain z, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 92
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 9 VSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTV---VWVANRINPINDSSGLLVVNE 63
+S+ + F K R VGIW+ +KTV W N + + S + + E
Sbjct: 31 ISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>pdb|4HDK|A Chain A, Crystal Structure Of Arsab In Complex With Phloroglucinol
pdb|4HDM|A Chain A, Crystal Structure Of Arsab In Complex With P-cresol
pdb|4HDN|A Chain A, Crystal Structure Of Arsab In The Substrate-free State.
pdb|4HDR|A Chain A, Crystal Structure Of Arsab In Complex With
5,6-dimethylbenzimidazole
pdb|4HDR|C Chain C, Crystal Structure Of Arsab In Complex With
5,6-dimethylbenzimidazole
pdb|4HDS|A Chain A, Crystal Structure Of Arsab In Complex With Phenol
Length = 348
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 4 DGRTLVSKEGSFELGFFSP---GSSKNRYVGIWYENMPVKTVVWVANRINPIN 53
DG +++K G FELG + GS+ NR + + + +AN I+P++
Sbjct: 234 DGLDVLAKVGGFELGALAGVILGSAANR-CAVVIDGLNTTAAALIANVIHPLS 285
>pdb|3CFC|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 213
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS +L + G + +RY+ W +P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|3CFB|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|B Chain B, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
Length = 213
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS +L + G + +RY+ W +P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|2HKF|H Chain H, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|H Chain H, Crystal Structure Of The Fab M75
Length = 218
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA 46
+ G LV +GS +L GS+ N Y W P K + WVA
Sbjct: 5 VESGGGLVQPKGSLKLSCVVSGSTLNNYAMNWVRQAPGKGLEWVA 49
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 5 GRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRIN 50
G LV GS +L + G + +RY W P K + WVA+ N
Sbjct: 8 GGDLVKPGGSLKLSCSASGFTFSRYAMSWVRQTPEKRLEWVASITN 53
>pdb|4DVB|A Chain A, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|H Chain H, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
Length = 213
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 5 GRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRIN 50
G LV GS +L + G + +RY W P K + WVA+ N
Sbjct: 8 GGDLVKPGGSLKLSCSASGFTFSRYAMSWVRQTPEKRLEWVASITN 53
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 71 SQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMK 130
Q + ++ L+K + PV + +G + ++ G+E L +FD + G++
Sbjct: 123 EQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVR 182
Query: 131 LGWDF 135
G+ F
Sbjct: 183 AGYFF 187
>pdb|1OTS|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTS|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTT|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTU|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|2FEC|J Chain J, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEC|I Chain I, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|C Chain C, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|E Chain E, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEE|J Chain J, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|I Chain I, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2EXW|C Chain C, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXW|E Chain E, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXY|C Chain C, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|E Chain E, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EZ0|C Chain C, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|2EZ0|E Chain E, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|4FG6|C Chain C, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|E Chain E, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4ENE|C Chain C, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|E Chain E, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 222
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDS 55
L G LV GS +L + G +RY W P K + W+ INP++ +
Sbjct: 5 LESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWI-GEINPVSST 57
>pdb|2XKN|B Chain B, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|D Chain D, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 216
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS +L + G + +RY W P K + WVA
Sbjct: 5 VESGGVLVKPGGSLKLSCAASGFTFSRYAMSWVRQTPEKRLEWVAT 50
>pdb|2H2P|C Chain C, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2P|E Chain E, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2S|C Chain C, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|E Chain E, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2HLF|C Chain C, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|E Chain E, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HT2|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT3|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT4|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HTK|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTL|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2R9H|C Chain C, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|E Chain E, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|3DET|C Chain C, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|E Chain E, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3EJY|C Chain C, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJY|E Chain E, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJZ|C Chain C, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
pdb|3EJZ|E Chain E, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
Length = 221
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDS 55
L G LV GS +L + G +RY W P K + W+ INP++ +
Sbjct: 4 LESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWI-GEINPVSST 56
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 92 LQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDFK-TGLERRITSWKSSD 150
L L+ G + RG+R G +L S+D S+ L KLG F LE S K+
Sbjct: 526 LDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALV 585
Query: 151 DPSPGDFI 158
PSP ++
Sbjct: 586 LPSPRPYV 593
>pdb|3GHE|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 233
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPIND 54
+ G LV GS L + G + N Y W P K + WVAN ND
Sbjct: 5 VQSGGGLVQPGGSLRLSCVASGFTFNNYWMSWVRQAPGKGLEWVANIKQDGND 57
>pdb|3HI5|H Chain H, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|H Chain H, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|X Chain X, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 220
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA 46
L G LV GS L + G + +RYV W P K + WV+
Sbjct: 5 LESGGGLVQPGGSLRLSCAASGFTFSRYVMWWVRQAPGKGLEWVS 49
>pdb|3SGD|H Chain H, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGD|J Chain J, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGE|H Chain H, Crystal Structure Of Mab 17.2 In Complex With R13
Peptide
pdb|3SGE|J Chain J, Crystal Structure Of Mab 17.2 In Complex With R13
Peptide
Length = 217
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 3 SDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSS 56
S GR LV +GS +L + G S N W P K + WVA + IN+ S
Sbjct: 7 SGGR-LVQPKGSLKLSCAASGFSFNTNAMNWVRQAPGKGLEWVARIRSKINNYS 59
>pdb|1XF2|H Chain H, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|B Chain B, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|H Chain H, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|B Chain B, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|H Chain H, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|B Chain B, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|H Chain H, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|B Chain B, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 230
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVV 61
L G LV S ++ + G + YV W + P + + W+ INP ND +
Sbjct: 5 LESGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIG-YINPYNDGTKY--- 60
Query: 62 NE--TGNLVLTSQNKSVVWSANLS 83
NE G LTS S LS
Sbjct: 61 NEKFKGKATLTSDKSSSTAYMELS 84
>pdb|1I8M|H Chain H, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|B Chain B, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|H Chain H, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|B Chain B, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
Length = 224
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVV 61
L G LV S ++ + G + YV W + P + + W+ INP ND +
Sbjct: 5 LESGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIG-YINPYNDGTKY--- 60
Query: 62 NE--TGNLVLTSQNKSVVWSANLS 83
NE G LTS S LS
Sbjct: 61 NEKFKGKATLTSDKSSSTAYMELS 84
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 5 GRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNET 64
R L +EG+F P S + Y + E +KT + + IN +N +L E
Sbjct: 234 NRFLKFREGAFT----DPDSYFHNYAKLTKEEA-IKTAMTLWKEINWLNLKQNILPTRER 288
Query: 65 GNLVLTSQNKSVVWSANLSK 84
+L+LT V L K
Sbjct: 289 ASLILTKSANHAVEEVRLRK 308
>pdb|3EOT|H Chain H, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 226
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS L + G + +RY W P K + WVA
Sbjct: 5 VESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAT 50
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 44/124 (35%), Gaps = 14/124 (11%)
Query: 23 GSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNETGNLVLTSQNKSVVWSANL 82
+ +N G N+P + W A R IN +SG V+E T K NL
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITKGSSVPTNL 376
Query: 83 SKEVQTPVVLQL--------LDSGNLVLRGERDGGSETYLWQSFDYP---SDTLLPGMKL 131
TP L + S + GE G S Q F P S + G+K
Sbjct: 377 EVVAATPTSLLISWDASYSSSVSYYRITYGETGGNSPV---QEFTVPGSKSTATISGLKP 433
Query: 132 GWDF 135
G D+
Sbjct: 434 GVDY 437
>pdb|2B2X|H Chain H, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant
Of The Aqc2 Fab
pdb|2B2X|I Chain I, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant
Of The Aqc2 Fab
Length = 226
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA 46
+ G LV GS L + G + +RY W P K + WVA
Sbjct: 5 VESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVA 49
>pdb|1MHP|H Chain H, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|X Chain X, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 219
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVAN 47
+ G LV GS L + G + +RY W P K + WVA
Sbjct: 5 VESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAT 50
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 5 GRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNET 64
R L +EG+F P S + Y + E +KT + IN +N +L E
Sbjct: 242 NRFLKFREGAFT----DPDSYFHNYAKLTKEEA-IKTAXTLWKEINWLNLKQNILPTRER 296
Query: 65 GNLVLTSQNKSVVWSANLSK 84
+L+LT V L K
Sbjct: 297 ASLILTKSANHAVEEVRLRK 316
>pdb|2P3N|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3N|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3N|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3N|D Chain D, Thermotoga Maritima Impase Tm1415
pdb|2P3V|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3V|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3V|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3V|D Chain D, Thermotoga Maritima Impase Tm1415
Length = 256
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 48 RINPINDSSGLLVVNETGNLV 68
RINP + ++GL++V E G +V
Sbjct: 196 RINPWDIAAGLIIVKEAGGMV 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,264,709
Number of Sequences: 62578
Number of extensions: 209309
Number of successful extensions: 491
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 68
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)