Query 037333
Match_columns 158
No_of_seqs 126 out of 1114
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 3.6E-33 7.8E-38 202.1 3.3 109 40-153 2-114 (114)
2 cd00028 B_lectin Bulb-type man 100.0 2E-28 4.3E-33 177.1 15.5 114 1-121 3-116 (116)
3 smart00108 B_lectin Bulb-type 100.0 5E-27 1.1E-31 169.2 14.4 112 1-120 3-114 (114)
4 PF01453 B_lectin: D-mannose b 99.2 1.9E-10 4.2E-15 83.0 11.6 101 5-122 11-114 (114)
5 smart00108 B_lectin Bulb-type 98.8 1.1E-08 2.4E-13 73.3 5.6 58 58-120 23-82 (114)
6 cd00028 B_lectin Bulb-type man 98.7 2E-08 4.4E-13 72.3 5.1 59 58-121 23-84 (116)
7 PRK11138 outer membrane biogen 74.4 16 0.00035 30.9 7.4 57 58-117 122-186 (394)
8 PF13360 PQQ_2: PQQ-like domai 74.0 12 0.00025 28.7 6.0 9 109-117 94-102 (238)
9 PRK11138 outer membrane biogen 72.6 27 0.00059 29.5 8.4 75 39-118 275-362 (394)
10 PF01436 NHL: NHL repeat; Int 66.8 9.9 0.00021 20.1 2.9 20 59-78 7-26 (28)
11 PF13360 PQQ_2: PQQ-like domai 65.2 41 0.0009 25.5 7.4 20 63-82 44-64 (238)
12 TIGR03300 assembly_YfgL outer 63.9 29 0.00062 29.0 6.7 78 39-119 84-173 (377)
13 TIGR03300 assembly_YfgL outer 62.4 87 0.0019 26.0 9.3 53 61-117 247-305 (377)
14 cd00216 PQQ_DH Dehydrogenases 56.6 46 0.001 29.3 7.0 77 38-118 37-137 (488)
15 KOG0640 mRNA cleavage stimulat 48.3 1.8E+02 0.004 25.1 10.3 70 43-116 251-333 (430)
16 cd05845 Ig2_L1-CAM_like Second 45.7 40 0.00087 23.3 3.9 33 38-71 32-64 (95)
17 KOG4649 PQQ (pyrrolo-quinoline 41.4 58 0.0013 27.5 4.8 46 39-84 168-218 (354)
18 cd00216 PQQ_DH Dehydrogenases 38.1 1E+02 0.0023 27.1 6.3 67 38-105 374-456 (488)
19 PLN00033 photosystem II stabil 37.2 1.7E+02 0.0036 25.6 7.2 47 65-115 259-305 (398)
20 PF14269 Arylsulfotran_2: Aryl 35.3 1.9E+02 0.0042 24.0 7.1 32 38-69 32-72 (299)
21 TIGR02608 delta_60_rpt delta-6 35.2 1.1E+02 0.0025 19.0 4.6 37 57-100 4-40 (55)
22 PF07354 Sp38: Zona-pellucida- 34.6 64 0.0014 26.8 4.0 32 39-71 12-43 (271)
23 TIGR03075 PQQ_enz_alc_DH PQQ-d 33.9 1.7E+02 0.0037 26.3 7.0 20 64-83 481-501 (527)
24 PF13570 PQQ_3: PQQ-like domai 31.5 96 0.0021 17.2 3.4 11 74-84 1-11 (40)
25 PF01011 PQQ: PQQ enzyme repea 31.3 52 0.0011 18.3 2.2 21 95-118 7-27 (38)
26 PF12894 Apc4_WD40: Anaphase-p 31.2 48 0.001 19.9 2.1 19 61-79 29-47 (47)
27 TIGR03075 PQQ_enz_alc_DH PQQ-d 29.0 3.4E+02 0.0073 24.4 8.0 77 38-118 45-147 (527)
28 smart00564 PQQ beta-propeller 27.4 64 0.0014 16.7 2.1 17 97-116 15-31 (33)
29 PF14870 PSII_BNR: Photosynthe 27.2 2.3E+02 0.0049 23.8 6.2 48 58-105 158-205 (302)
30 PF06006 DUF905: Bacterial pro 23.7 75 0.0016 21.0 2.1 18 66-83 34-51 (70)
31 PF02237 BPL_C: Biotin protein 23.4 1.4E+02 0.0029 17.7 3.2 13 93-105 21-33 (48)
32 PF12690 BsuPI: Intracellular 23.1 1.1E+02 0.0023 20.5 2.9 16 66-81 27-42 (82)
33 PRK05177 minC septum formation 22.6 1.9E+02 0.004 23.3 4.7 17 88-105 160-176 (239)
34 PF12197 lci: Bacillus cereus 22.1 1.9E+02 0.0042 17.4 4.0 25 7-33 4-28 (45)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.97 E-value=3.6e-33 Score=202.12 Aligned_cols=109 Identities=51% Similarity=0.797 Sum_probs=79.6
Q ss_pred CcEEEEcCCCCCCCC--CCceEEEecCCCEEEecCCCceEEee-cCCCCC-CcceEEEeccCCCEEEecCCCCCCCeEEE
Q 037333 40 KTVVWVANRINPIND--SSGLLVVNETGNLVLTSQNKSVVWSA-NLSKEV-QTPVVLQLLDSGNLVLRGERDGGSETYLW 115 (158)
Q Consensus 40 ~~vvW~an~~~p~~~--~~~~l~l~~dG~Lvl~d~~g~~iWss-~~~~~~-~~~~~~~L~d~GNLVl~~~~~~~~~~~iW 115 (158)
+++||+|||+.|+.. ..+.|.|+.||+|+|++..++.+|++ ++.+.+ ..+.+ +|+|+|||||++. .+.+||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~-~L~~~GNlvl~d~----~~~~lW 76 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYL-VLQDDGNLVLYDS----SGNVLW 76 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEE-EEETTSEEEEEET----TSEEEE
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEE-EEeCCCCEEEEee----cceEEE
Confidence 689999999999853 24789999999999999988899999 555544 34566 9999999999997 789999
Q ss_pred EeCCCCCCccCCCcEeeccccCCCeeEEEEcCCCCCCC
Q 037333 116 QSFDYPSDTLLPGMKLGWDFKTGLERRITSWKSSDDPS 153 (158)
Q Consensus 116 qSfd~Ptdtllpgq~l~~~~~~g~~~~l~s~~s~~d~s 153 (158)
|||+||+||+||+|+|+.+..+|....++||++.+|||
T Consensus 77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999877777555799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.96 E-value=2e-28 Score=177.06 Aligned_cols=114 Identities=48% Similarity=0.745 Sum_probs=96.7
Q ss_pred CCCCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEecCCCCcEEEEcCCCCCCCCCCceEEEecCCCEEEecCCCceEEee
Q 037333 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNETGNLVLTSQNKSVVWSA 80 (158)
Q Consensus 1 ~L~~~~~L~S~ng~F~lgF~~~~~~~~~~l~i~~~~~~~~~vvW~an~~~p~~~~~~~l~l~~dG~Lvl~d~~g~~iWss 80 (158)
+|..|+.|.|+++.|++|||........+..|||...+ .+++|.+|++.|. ...+.|.|+.||+|+|+|.++.+||++
T Consensus 3 ~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 3 PLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred CcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 47899999999999999999886422278889997654 6899999999883 357889999999999999989999999
Q ss_pred cCCCCCCcceEEEeccCCCEEEecCCCCCCCeEEEEeCCCC
Q 037333 81 NLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYP 121 (158)
Q Consensus 81 ~~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~P 121 (158)
++........+ +|+||||||||+. .+.+||||||||
T Consensus 81 ~~~~~~~~~~~-~L~ddGnlvl~~~----~~~~~W~Sf~~P 116 (116)
T cd00028 81 NTTRVNGNYVL-VLLDDGNLVLYDS----DGNFLWQSFDYP 116 (116)
T ss_pred cccCCCCceEE-EEeCCCCEEEECC----CCCEEEcCCCCC
Confidence 98762223445 9999999999998 678999999998
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.95 E-value=5e-27 Score=169.17 Aligned_cols=112 Identities=49% Similarity=0.778 Sum_probs=94.9
Q ss_pred CCCCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEecCCCCcEEEEcCCCCCCCCCCceEEEecCCCEEEecCCCceEEee
Q 037333 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNETGNLVLTSQNKSVVWSA 80 (158)
Q Consensus 1 ~L~~~~~L~S~ng~F~lgF~~~~~~~~~~l~i~~~~~~~~~vvW~an~~~p~~~~~~~l~l~~dG~Lvl~d~~g~~iWss 80 (158)
.|..++.|.|+++.|++|||.... ...+..|+|...+ .+++|.||++.|+.. .+.|.|++||+|+|++.++.+||++
T Consensus 3 ~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~-~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~S 79 (114)
T smart00108 3 TLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSS-RTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWSS 79 (114)
T ss_pred ccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCC-CcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEEe
Confidence 378899999999999999998864 4567889998655 689999999988764 4899999999999999988999999
Q ss_pred cCCCCCCcceEEEeccCCCEEEecCCCCCCCeEEEEeCCC
Q 037333 81 NLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 120 (158)
Q Consensus 81 ~~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~ 120 (158)
++........+ +|+|||||||++. .+.+|||||||
T Consensus 80 ~t~~~~~~~~~-~L~ddGnlvl~~~----~~~~~W~Sf~~ 114 (114)
T smart00108 80 NTTGANGNYVL-VLLDDGNLVIYDS----DGNFLWQSFDY 114 (114)
T ss_pred cccCCCCceEE-EEeCCCCEEEECC----CCCEEeCCCCC
Confidence 98722222345 9999999999988 67899999997
No 4
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.24 E-value=1.9e-10 Score=83.05 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCeEEeCCCeEEEEEEcCCCCCceEEEEEEecCCCCcEEEEc-CCCCCCCCCCceEEEecCCCEEEecCCCceEEeecCC
Q 037333 5 GRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVA-NRINPINDSSGLLVVNETGNLVLTSQNKSVVWSANLS 83 (158)
Q Consensus 5 ~~~L~S~ng~F~lgF~~~~~~~~~~l~i~~~~~~~~~vvW~a-n~~~p~~~~~~~l~l~~dG~Lvl~d~~g~~iWss~~~ 83 (158)
.+.+.+.+|.+.|-|+.+++ |.|+.. ...++|.. ++..... ..+.+.|++||||||+|..+.+||++..
T Consensus 11 ~~p~~~~s~~~~L~l~~dGn-----Lvl~~~---~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 11 NSPLTSSSGNYTLILQSDGN-----LVLYDS---NGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp TEEEEECETTEEEEEETTSE-----EEEEET---TTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred ccccccccccccceECCCCe-----EEEEcC---CCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 34666656999999999886 666442 35789999 5554422 4689999999999999998999999943
Q ss_pred CCCCcceEEEecc--CCCEEEecCCCCCCCeEEEEeCCCCC
Q 037333 84 KEVQTPVVLQLLD--SGNLVLRGERDGGSETYLWQSFDYPS 122 (158)
Q Consensus 84 ~~~~~~~~~~L~d--~GNLVl~~~~~~~~~~~iWqSfd~Pt 122 (158)
.+. ..+|.+++ +||++ +.. ...++|.|-..|+
T Consensus 81 ~pt--dt~L~~q~l~~~~~~-~~~----~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPT--DTLLPGQKLGDGNVT-GKN----DSLTSWSSNTDPS 114 (114)
T ss_dssp SSS---EEEEEET--TSEEE-EES----TSSEEEESS----
T ss_pred CCc--cEEEeccCcccCCCc-ccc----ceEEeECCCCCCC
Confidence 332 34448888 88988 755 4679999988874
No 5
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.79 E-value=1.1e-08 Score=73.34 Aligned_cols=58 Identities=31% Similarity=0.489 Sum_probs=46.0
Q ss_pred eEEEecCCCEEEecCC-CceEEeecCCCCCCc-ceEEEeccCCCEEEecCCCCCCCeEEEEeCCC
Q 037333 58 LLVVNETGNLVLTSQN-KSVVWSANLSKEVQT-PVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 120 (158)
Q Consensus 58 ~l~l~~dG~Lvl~d~~-g~~iWss~~~~~~~~-~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~ 120 (158)
.+.++.||++|++... ..++|++++...... ..+ .|+++|||||++. .+.+||+|-..
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l-~l~~dGnLvl~~~----~g~~vW~S~t~ 82 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTL-TLQSDGNLVLYDG----DGRVVWSSNTT 82 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEE-EEeCCCCEEEEeC----CCCEEEEeccc
Confidence 4667889999999864 479999998654322 445 9999999999987 67899999654
No 6
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.72 E-value=2e-08 Score=72.25 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=45.9
Q ss_pred eEEEec-CCCEEEecCC-CceEEeecCCCCC-CcceEEEeccCCCEEEecCCCCCCCeEEEEeCCCC
Q 037333 58 LLVVNE-TGNLVLTSQN-KSVVWSANLSKEV-QTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYP 121 (158)
Q Consensus 58 ~l~l~~-dG~Lvl~d~~-g~~iWss~~~~~~-~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~P 121 (158)
.+.++. ||+||+++.. ..++|++++.... ....+ .|+++|||||++. ++.+||+|-...
T Consensus 23 ~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l-~l~~dGnLvl~~~----~g~~vW~S~~~~ 84 (116)
T cd00028 23 KLIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTL-TLQSDGNLVIYDG----SGTVVWSSNTTR 84 (116)
T ss_pred cCCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEE-EEecCCCeEEEcC----CCcEEEEecccC
Confidence 455676 9999999864 4799999986532 23445 9999999999987 678999997653
No 7
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=74.43 E-value=16 Score=30.90 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=36.7
Q ss_pred eEEEe-cCCCEEEecC-CCceEEeecCCCCCC------cceEEEeccCCCEEEecCCCCCCCeEEEEe
Q 037333 58 LLVVN-ETGNLVLTSQ-NKSVVWSANLSKEVQ------TPVVLQLLDSGNLVLRGERDGGSETYLWQS 117 (158)
Q Consensus 58 ~l~l~-~dG~Lvl~d~-~g~~iWss~~~~~~~------~~~~~~L~d~GNLVl~~~~~~~~~~~iWqS 117 (158)
.+.+. .+|.|+-.|. .|+.+|+....+... ...+.....+|.|+-.|. .+++++|+-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~---~tG~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNE---SDGAVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEc---cCCCEeeee
Confidence 34444 4688887775 688999987643211 112213455677887877 488999986
No 8
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=73.99 E-value=12 Score=28.66 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=6.4
Q ss_pred CCCeEEEEe
Q 037333 109 GSETYLWQS 117 (158)
Q Consensus 109 ~~~~~iWqS 117 (158)
.++.++|+.
T Consensus 94 ~tG~~~W~~ 102 (238)
T PF13360_consen 94 KTGKVLWSI 102 (238)
T ss_dssp TTSCEEEEE
T ss_pred CCcceeeee
Confidence 566777777
No 9
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.65 E-value=27 Score=29.55 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCC---CCCCCCceEE-EecCCCEEEecC-CCceEEeecCCC-C--C-----CcceEEEeccCCCEEEecC
Q 037333 39 VKTVVWVANRIN---PINDSSGLLV-VNETGNLVLTSQ-NKSVVWSANLSK-E--V-----QTPVVLQLLDSGNLVLRGE 105 (158)
Q Consensus 39 ~~~vvW~an~~~---p~~~~~~~l~-l~~dG~Lvl~d~-~g~~iWss~~~~-~--~-----~~~~~~~L~d~GNLVl~~~ 105 (158)
...++|...... |+. ....+. ...+|.|+..|. +|..+|+.+... . . .+... ...++|.|...+.
T Consensus 275 tG~~~W~~~~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~-v~~~~G~l~~ld~ 352 (394)
T PRK11138 275 SGQIVWKREYGSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLV-VGDSEGYLHWINR 352 (394)
T ss_pred CCCEEEeecCCCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEE-EEeCCCEEEEEEC
Confidence 456788754322 211 123333 345788888776 577899876421 1 0 12222 5567888888877
Q ss_pred CCCCCCeEEEEeC
Q 037333 106 RDGGSETYLWQSF 118 (158)
Q Consensus 106 ~~~~~~~~iWqSf 118 (158)
. +++++|+-.
T Consensus 353 ~---tG~~~~~~~ 362 (394)
T PRK11138 353 E---DGRFVAQQK 362 (394)
T ss_pred C---CCCEEEEEE
Confidence 3 788999874
No 10
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=66.81 E-value=9.9 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=14.1
Q ss_pred EEEecCCCEEEecCCCceEE
Q 037333 59 LVVNETGNLVLTSQNKSVVW 78 (158)
Q Consensus 59 l~l~~dG~Lvl~d~~g~~iW 78 (158)
+.+..+|+|++.|.....||
T Consensus 7 vav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEETTSEEEEEECCCTEEE
T ss_pred EEEeCCCCEEEEECCCCEEE
Confidence 56667888888887655554
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=65.22 E-value=41 Score=25.52 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=12.5
Q ss_pred cCCCEEEecC-CCceEEeecC
Q 037333 63 ETGNLVLTSQ-NKSVVWSANL 82 (158)
Q Consensus 63 ~dG~Lvl~d~-~g~~iWss~~ 82 (158)
.+|.|+.+|. .|..+|+...
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEeec
Confidence 5566666664 5666676654
No 12
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.87 E-value=29 Score=28.96 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCCCCCC----CCceEEE-ecCCCEEEecC-CCceEEeecCCCCCCc------ceEEEeccCCCEEEecCC
Q 037333 39 VKTVVWVANRINPIND----SSGLLVV-NETGNLVLTSQ-NKSVVWSANLSKEVQT------PVVLQLLDSGNLVLRGER 106 (158)
Q Consensus 39 ~~~vvW~an~~~p~~~----~~~~l~l-~~dG~Lvl~d~-~g~~iWss~~~~~~~~------~~~~~L~d~GNLVl~~~~ 106 (158)
...++|.-+-..++.. ....+.+ ..+|.|+..|. +|+.+|+......... ..+..-..+|.|+..+.
T Consensus 84 tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~- 162 (377)
T TIGR03300 84 TGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDA- 162 (377)
T ss_pred CCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEc-
Confidence 4567887554333221 1223333 34677777776 5778888766544211 11112234555666666
Q ss_pred CCCCCeEEEEeCC
Q 037333 107 DGGSETYLWQSFD 119 (158)
Q Consensus 107 ~~~~~~~iWqSfd 119 (158)
.+++++|+--.
T Consensus 163 --~tG~~~W~~~~ 173 (377)
T TIGR03300 163 --ATGERLWTYSR 173 (377)
T ss_pred --CCCceeeEEcc
Confidence 47788888743
No 13
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.37 E-value=87 Score=26.04 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=35.1
Q ss_pred EecCCCEEEecC-CCceEEeecCCCCC-----CcceEEEeccCCCEEEecCCCCCCCeEEEEe
Q 037333 61 VNETGNLVLTSQ-NKSVVWSANLSKEV-----QTPVVLQLLDSGNLVLRGERDGGSETYLWQS 117 (158)
Q Consensus 61 l~~dG~Lvl~d~-~g~~iWss~~~~~~-----~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqS 117 (158)
...+|.|+.+|. .|..+|........ .+... ...++|.|+..+.. +++.+|+.
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vy-v~~~~G~l~~~d~~---tG~~~W~~ 305 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLY-VTDADGVVVALDRR---SGSELWKN 305 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEE-EECCCCeEEEEECC---CCcEEEcc
Confidence 345788888886 67899987643211 12222 45667888888773 78899986
No 14
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=56.59 E-value=46 Score=29.35 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCC-------CCCCCCCceEEEe-cCCCEEEecC-CCceEEeecCCCC---------CC-----c-ceEEE
Q 037333 38 PVKTVVWVANRI-------NPINDSSGLLVVN-ETGNLVLTSQ-NKSVVWSANLSKE---------VQ-----T-PVVLQ 93 (158)
Q Consensus 38 ~~~~vvW~an~~-------~p~~~~~~~l~l~-~dG~Lvl~d~-~g~~iWss~~~~~---------~~-----~-~~~~~ 93 (158)
....++|..+.. .|+.. ...+.+. .+|.|+-.|. .|+++|+...... .. . .....
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~-~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v 115 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVV-DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF 115 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEE-CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE
Confidence 345678887654 23322 3344444 4688888886 6889999865321 00 0 11102
Q ss_pred eccCCCEEEecCCCCCCCeEEEEeC
Q 037333 94 LLDSGNLVLRGERDGGSETYLWQSF 118 (158)
Q Consensus 94 L~d~GNLVl~~~~~~~~~~~iWqSf 118 (158)
-..+|.++-.|. .+++.+|+--
T Consensus 116 ~~~~g~v~AlD~---~TG~~~W~~~ 137 (488)
T cd00216 116 GTFDGRLVALDA---ETGKQVWKFG 137 (488)
T ss_pred ecCCCeEEEEEC---CCCCEeeeec
Confidence 234677777776 4889999854
No 15
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=48.30 E-value=1.8e+02 Score=25.15 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=43.9
Q ss_pred EEEcCCCCCCCCCCceEEEecCCCEEEecC-CCc-eEEeecC---------CCCC-CcceEEEeccCCCEEEecCCCCCC
Q 037333 43 VWVANRINPINDSSGLLVVNETGNLVLTSQ-NKS-VVWSANL---------SKEV-QTPVVLQLLDSGNLVLRGERDGGS 110 (158)
Q Consensus 43 vW~an~~~p~~~~~~~l~l~~dG~Lvl~d~-~g~-~iWss~~---------~~~~-~~~~~~~L~d~GNLVl~~~~~~~~ 110 (158)
.-.||.+..+++.-+.+.-...|+|+++.+ +|. -||-.-. .+.+ ..+.+ ++..+|..+|.... +
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa-~Ftkn~kyiLsSG~---D 326 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA-VFTKNGKYILSSGK---D 326 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE-EEccCCeEEeecCC---c
Confidence 345676666665445677778899988865 333 4786421 1111 23556 99999999998762 4
Q ss_pred Ce-EEEE
Q 037333 111 ET-YLWQ 116 (158)
Q Consensus 111 ~~-~iWq 116 (158)
+. -+|+
T Consensus 327 S~vkLWE 333 (430)
T KOG0640|consen 327 STVKLWE 333 (430)
T ss_pred ceeeeee
Confidence 33 4885
No 16
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=45.67 E-value=40 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEecCCCEEEec
Q 037333 38 PVKTVVWVANRINPINDSSGLLVVNETGNLVLTS 71 (158)
Q Consensus 38 ~~~~vvW~an~~~p~~~~~~~l~l~~dG~Lvl~d 71 (158)
|..++.|+-+....+. ......+..+|+|.+.+
T Consensus 32 P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 32 VPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFAN 64 (95)
T ss_pred CCCEEEEECCCCcccc-ccccEEECCCceEEEEE
Confidence 4567788854433343 24566777778877753
No 17
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.37 E-value=58 Score=27.48 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCCCCCC----CceEEE-ecCCCEEEecCCCceEEeecCCC
Q 037333 39 VKTVVWVANRINPINDS----SGLLVV-NETGNLVLTSQNKSVVWSANLSK 84 (158)
Q Consensus 39 ~~~vvW~an~~~p~~~~----~~~l~l-~~dG~Lvl~d~~g~~iWss~~~~ 84 (158)
+.+.+|.+.+..|+-.+ +....+ +-||+|.-.+..|+.||+..+.+
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 44789999999998643 112333 35898888888888888776544
No 18
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.05 E-value=1e+02 Score=27.12 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCC---------CCC-----CCCCceEEE-ecCCCEEEecC-CCceEEeecCCCCCCcceEEEeccCCCEE
Q 037333 38 PVKTVVWVANRI---------NPI-----NDSSGLLVV-NETGNLVLTSQ-NKSVVWSANLSKEVQTPVVLQLLDSGNLV 101 (158)
Q Consensus 38 ~~~~vvW~an~~---------~p~-----~~~~~~l~l-~~dG~Lvl~d~-~g~~iWss~~~~~~~~~~~~~L~d~GNLV 101 (158)
...+++|..... .|. .-....+.+ ..||.|..+|. .|+++|+.+........-+ ....+|.++
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~-~~~~~g~~y 452 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPM-TYEVNGKQY 452 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCE-EEEeCCEEE
Confidence 356788987644 121 111234444 46788888886 6889999887543221112 334468887
Q ss_pred EecC
Q 037333 102 LRGE 105 (158)
Q Consensus 102 l~~~ 105 (158)
+-..
T Consensus 453 v~~~ 456 (488)
T cd00216 453 VGVM 456 (488)
T ss_pred EEEE
Confidence 7654
No 19
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=37.25 E-value=1.7e+02 Score=25.56 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCEEEecCCCceEEeecCCCCCCcceEEEeccCCCEEEecCCCCCCCeEEE
Q 037333 65 GNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLW 115 (158)
Q Consensus 65 G~Lvl~d~~g~~iWss~~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~iW 115 (158)
|++++...+|+..|+.........-.++...++|.++|... .+.++|
T Consensus 259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~----~G~l~~ 305 (398)
T PLN00033 259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR----GGGLYV 305 (398)
T ss_pred ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC----CceEEE
Confidence 33333333444446644332211112225678899998766 455444
No 20
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.35 E-value=1.9e+02 Score=23.98 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCCC---------CCCCceEEEecCCCEEE
Q 037333 38 PVKTVVWVANRINPI---------NDSSGLLVVNETGNLVL 69 (158)
Q Consensus 38 ~~~~vvW~an~~~p~---------~~~~~~l~l~~dG~Lvl 69 (158)
+.-.++|......++ ...-..+.++.+|++.+
T Consensus 32 ~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lv 72 (299)
T PF14269_consen 32 SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALV 72 (299)
T ss_pred CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEE
Confidence 345667776554410 00123566677776655
No 21
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=35.19 E-value=1.1e+02 Score=19.00 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=21.1
Q ss_pred ceEEEecCCCEEEecCCCceEEeecCCCCCCcceEEEeccCCCE
Q 037333 57 GLLVVNETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNL 100 (158)
Q Consensus 57 ~~l~l~~dG~Lvl~d~~g~~iWss~~~~~~~~~~~~~L~d~GNL 100 (158)
..+.++.||.+++.-. .++. ........+ +|..||.|
T Consensus 4 ~~~~~q~DGkIlv~G~----~~~~--~~~~~~~l~-Rln~DGsL 40 (55)
T TIGR02608 4 YAVAVQSDGKILVAGY----VDNS--SGNNDFVLA-RLNADGSL 40 (55)
T ss_pred EEEEECCCCcEEEEEE----eecC--CCcccEEEE-EECCCCCc
Confidence 4678899999888532 1111 111122344 88888874
No 22
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=34.56 E-value=64 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEecCCCEEEec
Q 037333 39 VKTVVWVANRINPINDSSGLLVVNETGNLVLTS 71 (158)
Q Consensus 39 ~~~vvW~an~~~p~~~~~~~l~l~~dG~Lvl~d 71 (158)
+++..|+.-.++++.+ +..+.|++.|.|++.+
T Consensus 12 DP~y~W~GP~g~~l~g-n~~~nIT~TG~L~~~~ 43 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSG-NSYVNITETGKLMFKN 43 (271)
T ss_pred CCceEEECCCCcccCC-CCeEEEccCceEEeec
Confidence 5677899998888885 6789999999999975
No 23
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.92 E-value=1.7e+02 Score=26.30 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=11.4
Q ss_pred CCCEEEecC-CCceEEeecCC
Q 037333 64 TGNLVLTSQ-NKSVVWSANLS 83 (158)
Q Consensus 64 dG~Lvl~d~-~g~~iWss~~~ 83 (158)
+|.|..+|. .|+++|+....
T Consensus 481 ~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 481 EGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCeEEEEECCCCCEeEEEeCC
Confidence 456655555 45566666553
No 24
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.51 E-value=96 Score=17.15 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=5.1
Q ss_pred CceEEeecCCC
Q 037333 74 KSVVWSANLSK 84 (158)
Q Consensus 74 g~~iWss~~~~ 84 (158)
|+++|+.....
T Consensus 1 G~~~W~~~~~~ 11 (40)
T PF13570_consen 1 GKVLWSYDTGG 11 (40)
T ss_dssp S-EEEEEE-SS
T ss_pred CceeEEEECCC
Confidence 34566666543
No 25
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=31.27 E-value=52 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=15.8
Q ss_pred ccCCCEEEecCCCCCCCeEEEEeC
Q 037333 95 LDSGNLVLRGERDGGSETYLWQSF 118 (158)
Q Consensus 95 ~d~GNLVl~~~~~~~~~~~iWqSf 118 (158)
..+|.|+-+|.. +++++|+=.
T Consensus 7 ~~~g~l~AlD~~---TG~~~W~~~ 27 (38)
T PF01011_consen 7 TPDGYLYALDAK---TGKVLWKFQ 27 (38)
T ss_dssp TTTSEEEEEETT---TTSEEEEEE
T ss_pred CCCCEEEEEECC---CCCEEEeee
Confidence 667888888873 888899743
No 26
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=31.23 E-value=48 Score=19.86 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.6
Q ss_pred EecCCCEEEecCCCceEEe
Q 037333 61 VNETGNLVLTSQNKSVVWS 79 (158)
Q Consensus 61 l~~dG~Lvl~d~~g~~iWs 79 (158)
.+.+|.+.|+.-+++.||+
T Consensus 29 ~t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 29 GTEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred EECCCeEEEEECCCcCccC
Confidence 4568999999888888885
No 27
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=29.01 E-value=3.4e+02 Score=24.42 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCC-------CCCCCCCceEEEe-cCCCEEEecC-CCceEEeecCCCCC------------Cc-----ceE
Q 037333 38 PVKTVVWVANRI-------NPINDSSGLLVVN-ETGNLVLTSQ-NKSVVWSANLSKEV------------QT-----PVV 91 (158)
Q Consensus 38 ~~~~vvW~an~~-------~p~~~~~~~l~l~-~dG~Lvl~d~-~g~~iWss~~~~~~------------~~-----~~~ 91 (158)
..-.++|..... .|+.. ...+.+. .+|.|+-.|. .|+++|+....... .+ ..+
T Consensus 45 ~~L~~~W~~~~g~~~g~~stPvv~-~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v 123 (527)
T TIGR03075 45 KKLQPAWTFSLGKLRGQESQPLVV-DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKV 123 (527)
T ss_pred ccceEEEEEECCCCCCcccCCEEE-CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEE
Confidence 344567876543 23321 3456554 4577777775 58899997642110 00 111
Q ss_pred EEeccCCCEEEecCCCCCCCeEEEEeC
Q 037333 92 LQLLDSGNLVLRGERDGGSETYLWQSF 118 (158)
Q Consensus 92 ~~L~d~GNLVl~~~~~~~~~~~iWqSf 118 (158)
..-.-+|.|+-.|. .+++++|+--
T Consensus 124 ~v~t~dg~l~ALDa---~TGk~~W~~~ 147 (527)
T TIGR03075 124 FFGTLDARLVALDA---KTGKVVWSKK 147 (527)
T ss_pred EEEcCCCEEEEEEC---CCCCEEeecc
Confidence 02234667777776 4899999853
No 28
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.40 E-value=64 Score=16.73 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=8.4
Q ss_pred CCCEEEecCCCCCCCeEEEE
Q 037333 97 SGNLVLRGERDGGSETYLWQ 116 (158)
Q Consensus 97 ~GNLVl~~~~~~~~~~~iWq 116 (158)
+|.|+-.+.. ++.++|+
T Consensus 15 ~g~l~a~d~~---~G~~~W~ 31 (33)
T smart00564 15 DGTLYALDAK---TGEILWT 31 (33)
T ss_pred CCEEEEEEcc---cCcEEEE
Confidence 3444444442 5556665
No 29
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=27.22 E-value=2.3e+02 Score=23.78 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred eEEEecCCCEEEecCCCceEEeecCCCCCCcceEEEeccCCCEEEecC
Q 037333 58 LLVVNETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGE 105 (158)
Q Consensus 58 ~l~l~~dG~Lvl~d~~g~~iWss~~~~~~~~~~~~~L~d~GNLVl~~~ 105 (158)
.+.+...|++++.-..|+..|+.........-..+-...+|+|.+..+
T Consensus 158 ~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~ 205 (302)
T PF14870_consen 158 YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR 205 (302)
T ss_dssp EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET
T ss_pred EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC
Confidence 344555556555544455567665433222222336688899988765
No 30
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=23.66 E-value=75 Score=21.01 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=11.9
Q ss_pred CEEEecCCCceEEeecCC
Q 037333 66 NLVLTSQNKSVVWSANLS 83 (158)
Q Consensus 66 ~Lvl~d~~g~~iWss~~~ 83 (158)
.||+.|.+|+.||..=..
T Consensus 34 RlvvRd~~g~mvWRaWNF 51 (70)
T PF06006_consen 34 RLVVRDTEGQMVWRAWNF 51 (70)
T ss_dssp EEEEE-SS--EEEEEESS
T ss_pred EEEEEcCCCcEEEEeecc
Confidence 489998899999987544
No 31
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=23.45 E-value=1.4e+02 Score=17.65 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=7.9
Q ss_pred EeccCCCEEEecC
Q 037333 93 QLLDSGNLVLRGE 105 (158)
Q Consensus 93 ~L~d~GNLVl~~~ 105 (158)
-+.++|.|+|+.+
T Consensus 21 gId~~G~L~v~~~ 33 (48)
T PF02237_consen 21 GIDDDGALLVRTE 33 (48)
T ss_dssp EEETTSEEEEEET
T ss_pred EECCCCEEEEEEC
Confidence 5566666666655
No 32
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.07 E-value=1.1e+02 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=8.8
Q ss_pred CEEEecCCCceEEeec
Q 037333 66 NLVLTSQNKSVVWSAN 81 (158)
Q Consensus 66 ~Lvl~d~~g~~iWss~ 81 (158)
.++|+|.+|..||.-.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 4777777777777654
No 33
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=22.56 E-value=1.9e+02 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=13.0
Q ss_pred cceEEEeccCCCEEEecC
Q 037333 88 TPVVLQLLDSGNLVLRGE 105 (158)
Q Consensus 88 ~~~~~~L~d~GNLVl~~~ 105 (158)
++.| ++.-+||.++|..
T Consensus 160 n~GA-EViA~GnI~VyG~ 176 (239)
T PRK05177 160 ASGA-EVVAGGSIHVYGA 176 (239)
T ss_pred CCCC-EEEeCCCEEEEEE
Confidence 3456 7788999999864
No 34
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=22.09 E-value=1.9e+02 Score=17.41 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=14.3
Q ss_pred eEEeCCCeEEEEEEcCCCCCceEEEEE
Q 037333 7 TLVSKEGSFELGFFSPGSSKNRYVGIW 33 (158)
Q Consensus 7 ~L~S~ng~F~lgF~~~~~~~~~~l~i~ 33 (158)
-+.+++|.|+--|...+ ..|||-=.
T Consensus 4 ~~~~~nGvFAN~F~~~G--itWYfKg~ 28 (45)
T PF12197_consen 4 CMYSSNGVFANSFSDDG--ITWYFKGK 28 (45)
T ss_dssp EEEETT-----EEEETT--EEEEEEEE
T ss_pred EEEcCCCceEEEEEcCC--cEEEEeee
Confidence 46899999999999864 46777433
Done!