BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037334
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 15/246 (6%)
Query: 9 HVVLFPFMSKGHIIPILNLAQXXXXXXXXXXXXXXXXANRPFTS-KFLSNSSTAACCIID 67
HV + P GH+IP++ A+ P + + + +S ++ +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 68 IPYPENVPEIPAGVESTDKLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW 127
+P P ++ ++ + ST +SL V TR+ ++ F+ +E + +V D F
Sbjct: 68 LP-PVDLTDLSS---STRIESRISLTV--TRSNPELRKVFDSFVEGGRLPTALVVDLFGT 121
Query: 128 WTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSGVQSDDELLTLPEF--PWIKITK 185
D A +F P ++FY +S + +L V + LT P + +
Sbjct: 122 DAFDVAVEFHVPPYIFYPTTANVLSFFLHL--PKLDETVSCEFRELTEPLMLPGCVPVAG 179
Query: 186 KDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLVG--KPKSW 243
KDF P D K ++ + + G++VN+F+ELEP G KP +
Sbjct: 180 KDFLDPAQD--RKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVY 237
Query: 244 CVGPLC 249
VGPL
Sbjct: 238 PVGPLV 243
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 96 FTRAT--KLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSV 153
FTRA Q E+ VS +V+D F+W+ D A + G F+ ++S
Sbjct: 90 FTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLST 149
Query: 154 SRSVGQNRL---LSGVQS-DDELLTLPEFPWI-KITKKDFDPPITDPEPKGPHFELFIDQ 208
+ + R +SG+Q +DELL P + K+ +D I +
Sbjct: 150 HVYIDEIREKIGVSGIQGREDELLNF--IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRM 207
Query: 209 IVSTSNSYGMIVNSFYELEPLFADHCNLVGKPKSWC-VGPLCLAVLPP 255
+ + +NSF EL+ + +L K K++ +GP L PP
Sbjct: 208 GQVLPKATAVFINSFEELDDSLTN--DLKSKLKTYLNIGPFNLITPPP 253
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 106/275 (38%), Gaps = 44/275 (16%)
Query: 1 MGSISSDH-HVVLFPFMSKGHIIPILNLAQXXXXXXXXXXXXXXXXANRPFTSKFLSNSS 59
MG+ ++ HVV+ P+ +GHI P+ LA+ N + K L S
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITF-----VNTEYNHKRLLKSR 55
Query: 60 TAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPF---TRATKLMQPHFERALE---- 112
D N IP G+ + +S VP + ++P+ E
Sbjct: 56 GPKA--FDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHS 113
Query: 113 -SLPRVSFMVSDGFLWWTLDSANKFGFPRFVFY--------GMNNYAMSVSRSV----GQ 159
++P V+ +VSD + +T+ +A +F P +++ + ++ V R + +
Sbjct: 114 TNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDE 173
Query: 160 NRLLSGVQSDDELLTLPEFPWIKITK----KDFDPPITDPEPKGPHFELFIDQIVSTSNS 215
+ L +G + WI K KD I P E FI+ +
Sbjct: 174 SYLTNGCLE-------TKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKD 226
Query: 216 YGMIVNSFYELEPLFADHCNLVGK--PKSWCVGPL 248
+++N+F ELE +D N + P + +GPL
Sbjct: 227 TTILLNTFNELE---SDVINALSSTIPSIYPIGPL 258
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 37/265 (13%)
Query: 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQXXXXXXXXXXXXXXXXA--NRPFTSKFLSN- 57
M I+ + ++ P GH+ L A+ PF ++ +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 58 -SSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRATKLMQPHFERALESL-- 114
+S +ID+P E P+ + L S Y+ T L+ PH + ++++
Sbjct: 63 LASQPQIQLIDLPEVEPPPQ--------ELLKSPEFYI-LTFLESLI-PHVKATIKTILS 112
Query: 115 PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSGV----QSDD 170
+V +V D F +D N+FG P ++F N +S+ S+ +NR + V D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL-KNRQIEEVFDDSDRDH 171
Query: 171 ELLTLPEFPWIKITKKDFDPPITDPEP---KGPHFELFIDQIVSTSNSYGMIVNSFYELE 227
+LL +P + P P+ K + + ++ G+IVN+F +LE
Sbjct: 172 QLLNIPGI-------SNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLE 224
Query: 228 P----LFADHCNLVGKPKSWCVGPL 248
DH + P + VGPL
Sbjct: 225 QSSIDALYDHDEKI--PPIYAVGPL 247
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 37/265 (13%)
Query: 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQXXXXXXXXXXXXXXXXA--NRPFTSKFLSN- 57
M I+ + ++ P GH+ L A+ PF ++ +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 58 -SSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRATKLMQPHFERALESL-- 114
+S +ID+P E P+ + L S Y+ T L+ PH + ++++
Sbjct: 63 LASQPQIQLIDLPEVEPPPQ--------ELLKSPEFYI-LTFLESLI-PHVKATIKTILS 112
Query: 115 PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSGV----QSDD 170
+V +V D F +D N+FG P ++F N +S+ S+ +NR + V D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL-KNRQIEEVFDDSDRDH 171
Query: 171 ELLTLPEFPWIKITKKDFDPPITDPEP---KGPHFELFIDQIVSTSNSYGMIVNSFYELE 227
+LL +P + P P+ K + + ++ G+IVN+F +LE
Sbjct: 172 QLLNIPGI-------SNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLE 224
Query: 228 P----LFADHCNLVGKPKSWCVGPL 248
DH + P + VGPL
Sbjct: 225 QSSIDALYDHDEKI--PPIYAVGPL 247
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 73 NVPEIPAGVESTDKLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSD 123
N+ E ++ DKL + Y + K+MQPH + +++ P V F+ D
Sbjct: 19 NLTEFRNLIKQNDKL-VIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,743,175
Number of Sequences: 62578
Number of extensions: 300211
Number of successful extensions: 655
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 8
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)