Query 037334
Match_columns 263
No_of_seqs 180 out of 1402
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.4E-46 7.3E-51 344.9 25.5 245 1-252 1-253 (477)
2 PLN02534 UDP-glycosyltransfera 100.0 4.8E-45 1E-49 337.2 25.3 242 5-251 6-252 (491)
3 PLN02555 limonoid glucosyltran 100.0 4.8E-44 1E-48 330.0 24.8 235 1-251 1-248 (480)
4 PLN02670 transferase, transfer 100.0 1.8E-43 3.9E-48 325.3 23.1 241 6-251 5-250 (472)
5 PLN02173 UDP-glucosyl transfer 100.0 4.6E-43 1E-47 321.1 23.6 219 6-251 4-228 (449)
6 PLN02992 coniferyl-alcohol glu 100.0 3.3E-42 7.1E-47 317.4 24.3 230 6-251 4-243 (481)
7 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.6E-42 1.2E-46 314.9 23.9 227 1-251 1-240 (451)
8 PLN02152 indole-3-acetate beta 100.0 7.7E-42 1.7E-46 313.5 22.6 220 7-251 3-230 (455)
9 PLN02764 glycosyltransferase f 100.0 1.6E-41 3.5E-46 310.4 24.1 230 1-251 1-236 (453)
10 PLN03015 UDP-glucosyl transfer 100.0 3.7E-41 8.1E-46 309.0 23.6 230 7-250 3-246 (470)
11 PLN03004 UDP-glycosyltransfera 100.0 6E-41 1.3E-45 307.3 23.6 231 7-250 3-245 (451)
12 PLN02562 UDP-glycosyltransfera 100.0 9.9E-41 2.1E-45 307.0 24.1 228 6-251 5-246 (448)
13 PLN00414 glycosyltransferase f 100.0 6.3E-41 1.4E-45 307.5 22.2 224 6-252 3-230 (446)
14 PLN00164 glucosyltransferase; 100.0 1.4E-40 3.1E-45 308.2 23.9 228 7-251 3-249 (480)
15 PLN02210 UDP-glucosyl transfer 100.0 6.3E-40 1.4E-44 302.1 24.6 227 1-251 1-234 (456)
16 PLN02208 glycosyltransferase f 100.0 4.2E-40 9.1E-45 301.8 22.1 225 6-251 3-230 (442)
17 PLN03007 UDP-glucosyltransfera 100.0 6.8E-39 1.5E-43 297.8 25.4 240 6-251 4-254 (482)
18 PLN02448 UDP-glycosyltransfera 100.0 4E-38 8.6E-43 291.2 23.9 229 5-251 8-245 (459)
19 PLN02167 UDP-glycosyltransfera 100.0 3.5E-38 7.6E-43 292.4 23.1 232 6-251 2-254 (475)
20 PLN02207 UDP-glycosyltransfera 100.0 1.1E-37 2.3E-42 286.8 24.4 231 6-251 2-249 (468)
21 PLN02554 UDP-glycosyltransfera 100.0 1.1E-37 2.4E-42 289.5 23.4 226 7-250 2-248 (481)
22 KOG1192 UDP-glucuronosyl and U 99.5 4.5E-16 9.8E-21 145.6 -1.7 243 7-252 5-257 (496)
23 cd03784 GT1_Gtf_like This fami 99.5 1.9E-14 4E-19 131.2 8.1 127 8-148 1-136 (401)
24 TIGR01426 MGT glycosyltransfer 99.5 1.7E-13 3.8E-18 124.6 10.0 122 13-146 1-122 (392)
25 PF03033 Glyco_transf_28: Glyc 99.1 4E-11 8.6E-16 93.2 3.0 125 10-148 1-132 (139)
26 PHA03392 egt ecdysteroid UDP-g 98.3 3.5E-06 7.6E-11 79.4 8.6 132 8-148 21-169 (507)
27 PF13528 Glyco_trans_1_3: Glyc 98.2 1.8E-05 3.9E-10 69.7 10.7 118 9-149 2-126 (318)
28 COG1819 Glycosyl transferases, 98.2 3.5E-06 7.6E-11 77.2 6.1 55 7-69 1-55 (406)
29 TIGR00661 MJ1255 conserved hyp 97.8 0.0002 4.4E-09 63.5 11.0 116 11-147 4-123 (321)
30 PF00201 UDPGT: UDP-glucoronos 97.7 9.1E-05 2E-09 69.6 6.5 55 9-70 2-56 (500)
31 PRK12446 undecaprenyldiphospho 97.1 0.0064 1.4E-07 54.8 11.7 118 9-147 3-124 (352)
32 COG0707 MurG UDP-N-acetylgluco 96.7 0.034 7.4E-07 50.2 12.7 120 9-147 2-124 (357)
33 cd03785 GT1_MurG MurG is an N- 96.6 0.049 1.1E-06 48.3 12.7 115 10-143 2-118 (350)
34 TIGR01133 murG undecaprenyldip 96.2 0.12 2.6E-06 45.8 13.1 116 9-143 2-119 (348)
35 PRK00726 murG undecaprenyldiph 96.2 0.13 2.8E-06 45.9 13.0 117 8-143 2-120 (357)
36 TIGR03590 PseG pseudaminic aci 95.3 0.21 4.6E-06 43.4 10.5 98 15-144 11-110 (279)
37 TIGR00215 lpxB lipid-A-disacch 95.2 0.098 2.1E-06 47.7 8.3 111 8-143 6-119 (385)
38 cd03816 GT1_ALG1_like This fam 94.9 0.7 1.5E-05 42.4 13.1 122 6-144 2-128 (415)
39 cd03818 GT1_ExpC_like This fam 94.8 0.86 1.9E-05 41.3 13.3 100 23-144 12-116 (396)
40 PF13579 Glyco_trans_4_4: Glyc 93.9 0.17 3.7E-06 38.7 5.9 94 23-144 6-103 (160)
41 PRK00025 lpxB lipid-A-disaccha 93.1 0.6 1.3E-05 42.0 8.9 113 8-145 2-117 (380)
42 cd03800 GT1_Sucrose_synthase T 92.7 1.2 2.7E-05 39.7 10.3 107 18-143 21-130 (398)
43 COG4671 Predicted glycosyl tra 92.4 1.5 3.2E-05 39.3 9.8 107 5-128 7-118 (400)
44 PF13477 Glyco_trans_4_2: Glyc 92.2 3.5 7.5E-05 31.1 10.8 99 10-142 2-104 (139)
45 PLN02871 UDP-sulfoquinovose:DA 92.1 1.5 3.4E-05 40.8 10.4 41 5-46 56-101 (465)
46 cd03823 GT1_ExpE7_like This fa 91.8 3.1 6.7E-05 36.0 11.5 109 18-144 15-127 (359)
47 cd03794 GT1_wbuB_like This fam 90.9 4.5 9.7E-05 35.2 11.7 29 18-47 14-42 (394)
48 PRK10307 putative glycosyl tra 90.9 4.7 0.0001 36.7 12.1 22 24-46 21-42 (412)
49 cd03814 GT1_like_2 This family 90.5 3.3 7.1E-05 36.0 10.4 28 18-46 14-41 (364)
50 cd04962 GT1_like_5 This family 89.8 5.5 0.00012 35.2 11.3 37 9-46 2-39 (371)
51 cd03808 GT1_cap1E_like This fa 88.5 7 0.00015 33.5 10.9 107 10-144 2-110 (359)
52 cd03817 GT1_UGDG_like This fam 88.0 6.4 0.00014 34.1 10.4 33 14-47 10-42 (374)
53 TIGR02472 sucr_P_syn_N sucrose 86.6 9.7 0.00021 35.2 11.1 107 21-144 29-144 (439)
54 TIGR02470 sucr_synth sucrose s 84.7 18 0.00039 36.2 12.3 117 18-144 279-416 (784)
55 PLN00142 sucrose synthase 84.0 7.1 0.00015 39.2 9.2 108 26-144 319-438 (815)
56 TIGR02468 sucrsPsyn_pln sucros 82.4 10 0.00022 39.2 9.7 41 6-47 168-225 (1050)
57 cd03796 GT1_PIG-A_like This fa 81.8 19 0.00042 32.5 10.8 102 18-143 14-119 (398)
58 TIGR03449 mycothiol_MshA UDP-N 81.8 26 0.00056 31.5 11.6 110 17-145 19-132 (405)
59 cd03819 GT1_WavL_like This fam 80.6 21 0.00045 31.1 10.4 100 18-147 10-111 (355)
60 cd03805 GT1_ALG2_like This fam 80.0 38 0.00083 30.1 12.0 34 12-46 6-40 (392)
61 COG3980 spsG Spore coat polysa 78.8 2.4 5.1E-05 36.9 3.4 33 15-48 12-44 (318)
62 cd04955 GT1_like_6 This family 76.0 42 0.00092 29.2 10.9 47 18-70 15-61 (363)
63 PF04007 DUF354: Protein of un 75.6 52 0.0011 29.5 11.2 106 19-150 11-116 (335)
64 cd03820 GT1_amsD_like This fam 74.8 35 0.00075 28.9 9.9 31 17-48 12-42 (348)
65 PRK02261 methylaspartate mutas 74.4 8.8 0.00019 29.6 5.3 47 6-53 2-48 (137)
66 PRK13609 diacylglycerol glucos 71.7 6.4 0.00014 35.4 4.6 38 6-44 3-41 (380)
67 cd03802 GT1_AviGT4_like This f 71.3 66 0.0014 27.6 11.9 27 19-46 20-46 (335)
68 PF13439 Glyco_transf_4: Glyco 71.2 4.7 0.0001 31.1 3.2 28 18-46 12-39 (177)
69 cd02067 B12-binding B12 bindin 70.5 9.2 0.0002 28.3 4.5 43 9-52 1-43 (119)
70 PF12000 Glyco_trans_4_3: Gkyc 69.3 58 0.0013 26.2 11.0 29 116-144 66-95 (171)
71 cd03812 GT1_CapH_like This fam 68.8 65 0.0014 28.0 10.4 32 16-48 10-41 (358)
72 COG1435 Tdk Thymidine kinase [ 67.7 51 0.0011 27.2 8.5 36 11-47 8-43 (201)
73 cd03806 GT1_ALG11_like This fa 66.8 83 0.0018 28.9 10.9 111 22-145 18-137 (419)
74 PRK05749 3-deoxy-D-manno-octul 65.0 54 0.0012 29.9 9.4 101 9-145 51-155 (425)
75 COG0496 SurE Predicted acid ph 62.5 58 0.0013 28.0 8.2 26 24-51 16-41 (252)
76 cd03801 GT1_YqgM_like This fam 61.5 1E+02 0.0022 26.1 10.6 103 18-147 14-118 (374)
77 KOG2941 Beta-1,4-mannosyltrans 60.9 46 0.001 30.1 7.5 59 5-70 10-70 (444)
78 TIGR00715 precor6x_red precorr 60.0 95 0.0021 26.6 9.3 22 24-46 12-33 (256)
79 PRK08760 replicative DNA helic 58.9 71 0.0015 30.1 9.0 43 9-51 231-273 (476)
80 cd03798 GT1_wlbH_like This fam 57.7 1.2E+02 0.0026 25.8 10.9 31 17-48 13-43 (377)
81 cd03821 GT1_Bme6_like This fam 57.7 18 0.00039 31.2 4.6 30 17-47 13-42 (375)
82 PF07894 DUF1669: Protein of u 57.3 19 0.00041 31.4 4.5 48 101-148 133-185 (284)
83 PRK13932 stationary phase surv 56.2 65 0.0014 27.7 7.6 44 5-51 3-46 (257)
84 PRK05595 replicative DNA helic 55.8 82 0.0018 29.3 8.8 43 9-52 203-246 (444)
85 cd02070 corrinoid_protein_B12- 55.7 29 0.00064 28.4 5.3 47 6-53 81-127 (201)
86 PF02310 B12-binding: B12 bind 55.4 30 0.00065 25.3 4.9 43 9-52 2-44 (121)
87 TIGR02370 pyl_corrinoid methyl 55.3 30 0.00066 28.3 5.3 48 6-54 83-130 (197)
88 PF09314 DUF1972: Domain of un 54.2 24 0.00052 28.8 4.4 40 25-70 24-63 (185)
89 COG1066 Sms Predicted ATP-depe 53.9 68 0.0015 29.7 7.6 41 10-52 96-136 (456)
90 COG0052 RpsB Ribosomal protein 53.5 1.4E+02 0.003 25.6 8.8 32 116-147 156-189 (252)
91 PRK07773 replicative DNA helic 53.5 1E+02 0.0022 31.6 9.7 44 9-52 219-262 (886)
92 PRK13931 stationary phase surv 53.4 1.4E+02 0.0031 25.7 9.2 30 116-145 87-129 (261)
93 TIGR02853 spore_dpaA dipicolin 53.0 75 0.0016 27.7 7.7 99 24-141 13-117 (287)
94 COG1519 KdtA 3-deoxy-D-manno-o 52.8 1.9E+02 0.0041 26.8 10.2 101 9-145 50-154 (419)
95 PRK06321 replicative DNA helic 52.7 1.1E+02 0.0024 28.9 9.1 43 9-51 228-270 (472)
96 cd04951 GT1_WbdM_like This fam 51.6 19 0.00041 31.3 3.8 28 17-45 11-38 (360)
97 cd01635 Glycosyltransferase_GT 50.4 24 0.00053 28.0 4.0 26 17-43 12-37 (229)
98 cd02069 methionine_synthase_B1 49.2 43 0.00093 27.9 5.3 47 6-53 87-133 (213)
99 cd03795 GT1_like_4 This family 47.4 34 0.00074 29.6 4.7 30 17-47 13-42 (357)
100 cd03825 GT1_wcfI_like This fam 46.8 32 0.00069 29.9 4.5 38 9-47 2-41 (365)
101 PRK05636 replicative DNA helic 46.6 76 0.0016 30.2 7.1 43 9-51 267-309 (505)
102 PRK14089 ipid-A-disaccharide s 45.1 84 0.0018 28.3 6.9 34 115-148 75-113 (347)
103 cd02071 MM_CoA_mut_B12_BD meth 45.1 47 0.001 24.7 4.5 43 9-52 1-43 (122)
104 PRK13935 stationary phase surv 44.7 2E+02 0.0044 24.7 8.9 26 24-51 16-41 (253)
105 COG1484 DnaC DNA replication p 44.1 26 0.00057 30.0 3.3 46 7-53 105-150 (254)
106 PRK00346 surE 5'(3')-nucleotid 44.0 1.9E+02 0.004 24.8 8.5 26 24-51 16-41 (250)
107 PF06925 MGDG_synth: Monogalac 43.5 91 0.002 24.5 6.3 46 101-147 75-126 (169)
108 cd03811 GT1_WabH_like This fam 43.1 46 0.00099 28.2 4.8 31 16-47 10-40 (353)
109 PRK13933 stationary phase surv 43.0 1.8E+02 0.0039 25.0 8.2 25 24-50 16-40 (253)
110 cd01018 ZntC Metal binding pro 42.6 91 0.002 26.7 6.5 43 107-150 209-253 (266)
111 PRK01021 lpxB lipid-A-disaccha 41.4 85 0.0018 30.6 6.5 34 115-148 309-347 (608)
112 PRK09165 replicative DNA helic 41.4 2.4E+02 0.0051 26.8 9.6 44 9-52 219-276 (497)
113 cd01452 VWA_26S_proteasome_sub 41.0 1.4E+02 0.003 24.3 7.0 60 9-69 110-173 (187)
114 PF06506 PrpR_N: Propionate ca 40.2 49 0.0011 26.4 4.2 40 104-148 115-154 (176)
115 PRK11519 tyrosine kinase; Prov 40.1 2.1E+02 0.0046 28.5 9.4 41 6-47 524-566 (719)
116 cd03807 GT1_WbnK_like This fam 40.0 2.3E+02 0.005 24.0 11.7 33 14-47 8-40 (365)
117 PLN02846 digalactosyldiacylgly 40.0 48 0.001 31.2 4.6 41 5-46 2-47 (462)
118 cd01981 Pchlide_reductase_B Pc 39.6 53 0.0012 30.3 4.9 34 107-144 362-395 (430)
119 PF02441 Flavoprotein: Flavopr 39.3 61 0.0013 24.3 4.4 40 9-50 2-41 (129)
120 COG2185 Sbm Methylmalonyl-CoA 37.5 62 0.0013 25.2 4.1 41 6-47 11-51 (143)
121 PF04244 DPRP: Deoxyribodipyri 36.6 36 0.00079 28.6 3.0 27 19-46 46-72 (224)
122 PF00201 UDPGT: UDP-glucoronos 36.4 2.1 4.6E-05 40.2 -5.0 42 116-158 99-142 (500)
123 PF07801 DUF1647: Protein of u 36.3 1.4E+02 0.003 23.2 5.9 69 5-79 57-126 (142)
124 TIGR00236 wecB UDP-N-acetylglu 36.1 96 0.0021 27.5 5.9 107 15-143 7-116 (365)
125 PLN02275 transferase, transfer 34.7 3.3E+02 0.0072 24.2 13.8 56 7-69 6-62 (371)
126 COG0299 PurN Folate-dependent 34.7 68 0.0015 26.5 4.1 32 116-147 29-60 (200)
127 PF00070 Pyr_redox: Pyridine n 34.6 57 0.0012 21.9 3.3 24 22-46 9-32 (80)
128 PF01555 N6_N4_Mtase: DNA meth 34.4 56 0.0012 26.5 3.8 44 105-148 179-224 (231)
129 PF04127 DFP: DNA / pantothena 33.8 44 0.00095 27.2 3.0 21 25-46 33-53 (185)
130 TIGR03877 thermo_KaiC_1 KaiC d 33.6 2.8E+02 0.0061 23.1 9.0 44 8-52 22-65 (237)
131 PRK12311 rpsB 30S ribosomal pr 33.4 2.6E+02 0.0056 25.0 7.9 33 116-148 152-186 (326)
132 PF02603 Hpr_kinase_N: HPr Ser 33.3 58 0.0013 24.6 3.4 42 105-147 72-115 (127)
133 PF12146 Hydrolase_4: Putative 33.0 89 0.0019 21.3 4.1 34 8-42 16-49 (79)
134 PRK00654 glgA glycogen synthas 32.4 73 0.0016 29.6 4.6 27 19-46 18-44 (466)
135 COG0162 TyrS Tyrosyl-tRNA synt 32.3 48 0.001 30.5 3.2 26 18-45 48-73 (401)
136 PRK04328 hypothetical protein; 32.1 3.1E+02 0.0067 23.1 10.9 44 8-52 24-67 (249)
137 CHL00076 chlB photochlorophyll 31.4 82 0.0018 30.0 4.8 36 105-144 364-399 (513)
138 PF08660 Alg14: Oligosaccharid 30.9 2.7E+02 0.0059 22.1 9.1 32 13-45 3-35 (170)
139 PF00391 PEP-utilizers: PEP-ut 30.9 78 0.0017 21.6 3.5 29 116-144 30-60 (80)
140 PF01497 Peripla_BP_2: Peripla 30.8 87 0.0019 25.6 4.5 41 105-147 51-93 (238)
141 TIGR01278 DPOR_BchB light-inde 30.3 90 0.0019 29.7 4.9 34 106-143 355-388 (511)
142 PF02571 CbiJ: Precorrin-6x re 29.9 1E+02 0.0023 26.3 4.8 38 105-144 56-100 (249)
143 cd03791 GT1_Glycogen_synthase_ 29.9 43 0.00094 31.0 2.7 22 24-46 22-43 (476)
144 PF13450 NAD_binding_8: NAD(P) 29.6 64 0.0014 21.3 2.8 22 24-46 8-29 (68)
145 COG0467 RAD55 RecA-superfamily 29.4 1.1E+02 0.0024 25.9 4.9 46 7-53 23-68 (260)
146 PF05728 UPF0227: Uncharacteri 29.3 1.5E+02 0.0033 24.0 5.5 49 105-154 47-98 (187)
147 PF07355 GRDB: Glycine/sarcosi 29.2 1.3E+02 0.0029 27.1 5.4 42 101-143 66-117 (349)
148 TIGR03088 stp2 sugar transfera 29.0 4E+02 0.0086 23.4 10.6 100 12-142 7-108 (374)
149 cd01141 TroA_d Periplasmic bin 28.9 98 0.0021 24.5 4.3 40 104-145 59-100 (186)
150 PRK08305 spoVFB dipicolinate s 28.7 66 0.0014 26.5 3.2 37 11-48 8-45 (196)
151 PTZ00445 p36-lilke protein; Pr 28.6 56 0.0012 27.3 2.8 28 18-46 73-101 (219)
152 cd01425 RPS2 Ribosomal protein 28.2 3.3E+02 0.007 22.1 9.2 33 115-147 126-160 (193)
153 PRK10422 lipopolysaccharide co 28.1 91 0.002 27.7 4.3 49 1-51 1-50 (352)
154 PRK02910 light-independent pro 28.0 1.1E+02 0.0023 29.2 5.0 34 106-143 353-386 (519)
155 cd02065 B12-binding_like B12 b 27.8 1.4E+02 0.003 21.7 4.7 42 9-51 1-42 (125)
156 PF08323 Glyco_transf_5: Starc 27.7 47 0.001 28.1 2.3 22 24-46 22-43 (245)
157 PF08897 DUF1841: Domain of un 27.5 42 0.00091 25.9 1.7 19 16-34 57-75 (137)
158 PRK03359 putative electron tra 27.4 1.4E+02 0.003 25.7 5.1 101 20-146 33-148 (256)
159 PRK13608 diacylglycerol glucos 27.4 99 0.0021 28.0 4.5 37 7-44 5-45 (391)
160 COG4081 Uncharacterized protei 27.3 64 0.0014 24.7 2.6 37 9-46 5-42 (148)
161 PF10657 RC-P840_PscD: Photosy 27.3 1E+02 0.0023 23.2 3.7 42 5-47 44-85 (144)
162 PLN02891 IMP cyclohydrolase 26.7 2.2E+02 0.0047 27.4 6.5 86 23-125 34-123 (547)
163 PF01380 SIS: SIS domain SIS d 26.7 1.3E+02 0.0029 21.9 4.4 34 15-49 60-93 (131)
164 PRK12342 hypothetical protein; 26.6 1.5E+02 0.0032 25.5 5.1 100 20-146 32-145 (254)
165 TIGR00679 hpr-ser Hpr(Ser) kin 26.6 2.5E+02 0.0054 24.9 6.6 45 104-149 72-118 (304)
166 COG3150 Predicted esterase [Ge 26.3 1E+02 0.0022 24.9 3.8 46 103-148 45-92 (191)
167 cd00861 ProRS_anticodon_short 25.9 1.3E+02 0.0028 20.6 4.0 36 8-44 2-39 (94)
168 cd01421 IMPCH Inosine monophos 25.8 3E+02 0.0065 22.5 6.4 27 23-52 12-38 (187)
169 PF08026 Antimicrobial_5: Bee 25.7 9.7 0.00021 21.9 -1.5 19 14-32 17-35 (39)
170 PF10087 DUF2325: Uncharacteri 25.6 1.7E+02 0.0036 20.7 4.6 36 116-151 48-89 (97)
171 PRK14478 nitrogenase molybdenu 25.3 94 0.002 29.2 4.0 31 107-141 385-415 (475)
172 PRK04940 hypothetical protein; 25.3 2.4E+02 0.0051 22.9 5.8 34 117-150 61-95 (180)
173 COG0313 Predicted methyltransf 24.6 2.4E+02 0.0051 24.6 5.9 51 105-156 68-125 (275)
174 PRK05752 uroporphyrinogen-III 24.5 1.3E+02 0.0028 25.4 4.5 38 209-247 50-91 (255)
175 PF03720 UDPG_MGDP_dh_C: UDP-g 24.3 91 0.002 22.5 3.0 27 22-49 17-43 (106)
176 cd01988 Na_H_Antiporter_C The 24.2 1.6E+02 0.0035 21.2 4.5 35 11-45 2-36 (132)
177 TIGR00355 purH phosphoribosyla 24.1 2.5E+02 0.0053 26.8 6.4 35 24-68 13-47 (511)
178 cd03115 SRP The signal recogni 23.6 2E+02 0.0044 22.3 5.2 39 10-49 3-41 (173)
179 PRK00881 purH bifunctional pho 23.6 3.2E+02 0.007 26.1 7.1 86 23-125 16-105 (513)
180 TIGR00234 tyrS tyrosyl-tRNA sy 23.4 71 0.0015 29.1 2.7 26 18-45 46-71 (377)
181 PRK13609 diacylglycerol glucos 23.4 1.5E+02 0.0033 26.4 4.9 40 105-145 94-135 (380)
182 TIGR03492 conserved hypothetic 23.3 5.7E+02 0.012 23.3 8.8 25 22-46 11-39 (396)
183 cd02034 CooC The accessory pro 23.2 2.1E+02 0.0045 21.1 4.8 37 9-46 1-37 (116)
184 PF07015 VirC1: VirC1 protein; 23.1 1.5E+02 0.0032 25.2 4.3 35 16-51 11-45 (231)
185 PF00289 CPSase_L_chain: Carba 23.0 59 0.0013 24.0 1.8 29 13-44 77-105 (110)
186 cd01017 AdcA Metal binding pro 23.0 1.8E+02 0.004 25.0 5.2 35 110-145 215-251 (282)
187 PRK08057 cobalt-precorrin-6x r 22.7 1.9E+02 0.0041 24.7 5.1 38 105-144 55-99 (248)
188 TIGR02095 glgA glycogen/starch 22.5 72 0.0016 29.6 2.7 24 22-46 21-44 (473)
189 TIGR00064 ftsY signal recognit 22.3 2.1E+02 0.0045 24.7 5.3 39 8-47 73-111 (272)
190 PRK10916 ADP-heptose:LPS hepto 22.2 1.6E+02 0.0035 26.0 4.8 44 9-52 2-46 (348)
191 PF00919 UPF0004: Uncharacteri 22.1 50 0.0011 23.8 1.2 25 212-236 34-61 (98)
192 TIGR03568 NeuC_NnaA UDP-N-acet 22.0 2.4E+02 0.0053 25.3 5.9 44 102-146 80-126 (365)
193 PRK00771 signal recognition pa 21.7 2.2E+02 0.0048 26.6 5.6 42 7-49 95-136 (437)
194 TIGR01917 gly_red_sel_B glycin 21.6 2.2E+02 0.0047 26.5 5.3 43 101-144 62-114 (431)
195 cd01147 HemV-2 Metal binding p 21.6 1.7E+02 0.0037 24.4 4.6 40 105-146 65-107 (262)
196 PF13378 MR_MLE_C: Enolase C-t 21.6 3.1E+02 0.0067 19.5 5.5 53 105-158 8-67 (111)
197 TIGR01918 various_sel_PB selen 21.5 2.2E+02 0.0048 26.5 5.4 43 101-144 62-114 (431)
198 COG1797 CobB Cobyrinic acid a, 21.4 5.9E+02 0.013 23.9 8.1 32 10-42 4-35 (451)
199 PF01975 SurE: Survival protei 21.2 98 0.0021 25.4 2.9 27 24-51 16-42 (196)
200 PF00448 SRP54: SRP54-type pro 21.2 1.8E+02 0.0038 23.7 4.4 39 9-48 3-41 (196)
201 cd03822 GT1_ecORF704_like This 21.2 1.5E+02 0.0033 25.4 4.4 28 18-46 13-40 (366)
202 COG5148 RPN10 26S proteasome r 21.1 2.2E+02 0.0047 23.4 4.7 37 8-45 109-145 (243)
203 PLN02605 monogalactosyldiacylg 20.8 2.1E+02 0.0045 25.7 5.3 35 11-45 3-39 (382)
204 TIGR01285 nifN nitrogenase mol 20.7 1.6E+02 0.0034 27.4 4.5 19 23-42 182-200 (432)
205 KOG4589 Cell division protein 20.7 99 0.0022 25.6 2.7 13 115-127 135-147 (232)
206 PRK06222 ferredoxin-NADP(+) re 20.6 1.3E+02 0.0028 25.9 3.7 39 8-49 99-137 (281)
207 PF00175 NAD_binding_1: Oxidor 20.5 1.5E+02 0.0032 20.8 3.5 29 21-49 8-37 (109)
208 PF02142 MGS: MGS-like domain 20.5 88 0.0019 22.0 2.2 26 24-52 2-27 (95)
209 TIGR02329 propionate_PrpR prop 20.4 2.4E+02 0.0052 27.0 5.7 29 115-146 144-172 (526)
210 cd03799 GT1_amsK_like This is 20.3 2E+02 0.0044 24.6 5.0 26 20-46 13-38 (355)
211 PRK09219 xanthine phosphoribos 20.3 3.2E+02 0.007 22.2 5.8 42 104-146 39-82 (189)
212 cd01143 YvrC Periplasmic bindi 20.2 2E+02 0.0043 22.6 4.6 41 105-147 51-92 (195)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-46 Score=344.93 Aligned_cols=245 Identities=30% Similarity=0.496 Sum_probs=190.1
Q ss_pred CCCC--CCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCC
Q 037334 1 MGSI--SSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIP 78 (263)
Q Consensus 1 m~~~--~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p 78 (263)
|-+. .+++|||++|||+|||+|||++|||+|+++ |++|||++|+.|+.++.+..+.. ++|+++.+|+|.. +++|
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~~~~~~~~--~~i~~~~lp~P~~-~~lP 76 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFLNPLLSKH--PSIETLVLPFPSH-PSIP 76 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHhhhcccC--CCeeEEeCCCCCc-CCCC
Confidence 5554 457899999999999999999999999999 99999999999988776543222 4699999998753 6888
Q ss_pred CCCCCCCCCCCccchhHHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHH
Q 037334 79 AGVESTDKLPSMSLYVPFTRATKLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSV 157 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 157 (263)
+|.++..+++. +.+..+..+...+.+.+++++++. .+++|||+|+|++|+.+||+++|||+++|||++|+++++++++
T Consensus 77 dG~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~ 155 (477)
T PLN02863 77 SGVENVKDLPP-SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSL 155 (477)
T ss_pred CCCcChhhcch-hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHH
Confidence 88765544331 334456666677788888888875 4679999999999999999999999999999999999999988
Q ss_pred hccccccC-CCCCCCcc---cCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHH
Q 037334 158 GQNRLLSG-VQSDDELL---TLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADH 233 (263)
Q Consensus 158 ~~~~~~~~-~~~~~~~~---~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 233 (263)
+...+... .....+.+ .+||+|. ++.+|||++++.....+...+.+.+..+..+.+++||+|||+|||++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~iPg~~~--~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 233 (477)
T PLN02863 156 WREMPTKINPDDQNEILSFSKIPNCPK--YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEH 233 (477)
T ss_pred hhcccccccccccccccccCCCCCCCC--cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHH
Confidence 65432210 01111222 4788876 899999987764322333455666666667889999999999999999999
Q ss_pred HhhcCC-CceEEeCccCCCC
Q 037334 234 CNLVGK-PKSWCVGPLCLAV 252 (263)
Q Consensus 234 l~~~~~-~~v~~VGPl~~~~ 252 (263)
+++.++ +|||+||||++..
T Consensus 234 ~~~~~~~~~v~~IGPL~~~~ 253 (477)
T PLN02863 234 LKKELGHDRVWAVGPILPLS 253 (477)
T ss_pred HHhhcCCCCeEEeCCCcccc
Confidence 988654 6899999998654
No 2
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-45 Score=337.22 Aligned_cols=242 Identities=33% Similarity=0.571 Sum_probs=183.3
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCC--CCCceEEecCCCCCCCCCCCCCC
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSS--TAACCIIDIPYPENVPEIPAGVE 82 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~--~~~i~~~~lp~~~~~~~~p~~~~ 82 (263)
+++.|||++|||+|||+|||++|||+|+++ |++|||++|+.|+.++.+..+... ...|+|+.+|+|...+++|++.+
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 445799999999999999999999999999 999999999999877765432111 12499999998754468888765
Q ss_pred CCCCCCCccchhHHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccc
Q 037334 83 STDKLPSMSLYVPFTRATKLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNR 161 (263)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 161 (263)
+..+.+....+..+..++..+++.+++++++. .+++|||+|+|++|+.+||+++|||+|+|||++++++++++++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 54433321334455566677889999999864 47899999999999999999999999999999999998877654332
Q ss_pred cccCCCCCCCcccCCCCCC-CccccCCCCCCCCCCCCCCchHHHHHHHHHH-cccccEEEEcchhhhhHHHHHHHhhcCC
Q 037334 162 LLSGVQSDDELLTLPEFPW-IKITKKDFDPPITDPEPKGPHFELFIDQIVS-TSNSYGMIVNSFYELEPLFADHCNLVGK 239 (263)
Q Consensus 162 ~~~~~~~~~~~~~vPg~p~-~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~-~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 239 (263)
+......+.+.+.+||+|+ ..++.+|||+++... . ..+.+...++. .+.++|||+|||+|||+++++++++..+
T Consensus 165 ~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 165 AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--P--DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred ccccCCCCCceeecCCCCccccccHHHCChhhcCc--c--cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 2210111223567899985 568999999865432 1 13334444443 3568899999999999999999988666
Q ss_pred CceEEeCccCCC
Q 037334 240 PKSWCVGPLCLA 251 (263)
Q Consensus 240 ~~v~~VGPl~~~ 251 (263)
+|+|+||||++.
T Consensus 241 ~~v~~VGPL~~~ 252 (491)
T PLN02534 241 KKVWCVGPVSLC 252 (491)
T ss_pred CcEEEECccccc
Confidence 789999999753
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.8e-44 Score=330.03 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=177.1
Q ss_pred CCCCCCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh--hh-cc-CCC---CCceEEecCCCCC
Q 037334 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK--FL-SN-SST---AACCIIDIPYPEN 73 (263)
Q Consensus 1 m~~~~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~--~~-~~-~~~---~~i~~~~lp~~~~ 73 (263)
|+|.+.++|||++|||+|||+|||++|||+|+++ |+.|||++|+.++.++.+ .. +. ... ..++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----
Confidence 8999889999999999999999999999999999 999999999988876653 11 11 000 124444443
Q ss_pred CCCCCCCCCCCCCCCCccchhHHHHHH-HhcHHHHHHHHhhC----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccH
Q 037334 74 VPEIPAGVESTDKLPSMSLYVPFTRAT-KLMQPHFERALESL----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 74 ~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 148 (263)
+++|++.+... + +..++... ..+.+.++++++++ ++++|||+|+|++|+.+||+++|||+++||+++|
T Consensus 76 -dglp~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a 148 (480)
T PLN02555 76 -DGWAEDDPRRQ-----D-LDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSC 148 (480)
T ss_pred -CCCCCCccccc-----C-HHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccH
Confidence 57876543211 2 22344444 45678888888753 2459999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-ccccCCCCCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhh
Q 037334 149 YAMSVSRSVGQN-RLLSGVQSDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELE 227 (263)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 227 (263)
++++++++++.. .+.......+..+.+||+|. ++.+|||+++...+..+..++.+.+..+++.+++|||+|||+|||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 226 (480)
T PLN02555 149 ACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL--LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELE 226 (480)
T ss_pred HHHHHHHHHhhcCCCcccccCCCceeecCCCCC--cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHh
Confidence 999999888543 12210110123467999986 899999998754322333466677778888999999999999999
Q ss_pred HHHHHHHhhcCCCceEEeCccCCC
Q 037334 228 PLFADHCNLVGKPKSWCVGPLCLA 251 (263)
Q Consensus 228 ~~~l~~l~~~~~~~v~~VGPl~~~ 251 (263)
+++++++++. . |+|+||||++.
T Consensus 227 ~~~~~~l~~~-~-~v~~iGPl~~~ 248 (480)
T PLN02555 227 KEIIDYMSKL-C-PIKPVGPLFKM 248 (480)
T ss_pred HHHHHHHhhC-C-CEEEeCcccCc
Confidence 9999999874 2 59999999864
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.8e-43 Score=325.31 Aligned_cols=241 Identities=20% Similarity=0.284 Sum_probs=178.1
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTD 85 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 85 (263)
.+.|||++|||+|||+|||++|||+|++| |++|||++|+.|+.++.+..... .++|+++.+|+|+. +++|++.++..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~-~~~i~~~~lp~p~~-dglp~~~~~~~ 81 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKIPSQL-SSSITLVSFPLPSV-PGLPSSAESST 81 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhccccC-CCCeeEEECCCCcc-CCCCCCccccc
Confidence 45799999999999999999999999999 99999999999987765421111 13699999998753 67887655432
Q ss_pred CCCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccccccC
Q 037334 86 KLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSG 165 (263)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 165 (263)
+.+. .....+..+.+.+++.+++++++. +++|||+|+|++|+.+||+++|||+|+||++++++++++++.........
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 82 DVPY-TKQQLLKKAFDLLEPPLTTFLETS-KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred ccch-hhHHHHHHHHHHhHHHHHHHHHhC-CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 2210 111234455578899999999987 89999999999999999999999999999999999999875532211000
Q ss_pred CCCCCCcc-cCCCCCC----CccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHhhcCCC
Q 037334 166 VQSDDELL-TLPEFPW----IKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLVGKP 240 (263)
Q Consensus 166 ~~~~~~~~-~vPg~p~----~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~ 240 (263)
....++.+ .+||+++ +.++.+|||+++............+.+..+.+.+++|||+|||+|||+++++++++..++
T Consensus 160 ~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~ 239 (472)
T PLN02670 160 LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRK 239 (472)
T ss_pred CCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCC
Confidence 00111222 3566422 236778999877533212223445556667788999999999999999999999886567
Q ss_pred ceEEeCccCCC
Q 037334 241 KSWCVGPLCLA 251 (263)
Q Consensus 241 ~v~~VGPl~~~ 251 (263)
|+|+||||++.
T Consensus 240 ~v~~VGPl~~~ 250 (472)
T PLN02670 240 PIIPIGFLPPV 250 (472)
T ss_pred CeEEEecCCcc
Confidence 89999999864
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.6e-43 Score=321.12 Aligned_cols=219 Identities=21% Similarity=0.250 Sum_probs=171.3
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCC-CCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAG-VEST 84 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~-~~~~ 84 (263)
++.|||++|||+|||+|||++|||+|+++ |++|||++|+.+..++.+. .. ++|+++.+| +++|++ .+..
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~~~~--~~--~~i~~~~ip-----dglp~~~~~~~ 73 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTIHLD--PS--SPISIATIS-----DGYDQGGFSSA 73 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhcccC--CC--CCEEEEEcC-----CCCCCcccccc
Confidence 56899999999999999999999999999 9999999999887665321 11 469999886 578863 2322
Q ss_pred CCCCCccchhHHHHHH-HhcHHHHHHHHhhC----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhc
Q 037334 85 DKLPSMSLYVPFTRAT-KLMQPHFERALESL----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQ 159 (263)
Q Consensus 85 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 159 (263)
. . ...++.+. ..+.+.++++++++ ++++|||+|+|++|+.+||+++|||+|+||++++++++++++...
T Consensus 74 ~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~ 147 (449)
T PLN02173 74 G-----S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI 147 (449)
T ss_pred c-----C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh
Confidence 1 1 22445444 46788899888764 235999999999999999999999999999999998877765321
Q ss_pred cccccCCCCCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHhhcCC
Q 037334 160 NRLLSGVQSDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLVGK 239 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 239 (263)
. . ....+.+||+|. ++.+|||+++.+.+..+..++.+.+..+++.++++||+|||+|||+++++++++.
T Consensus 148 ~-----~--~~~~~~~pg~p~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 216 (449)
T PLN02173 148 N-----N--GSLTLPIKDLPL--LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-- 216 (449)
T ss_pred c-----c--CCccCCCCCCCC--CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--
Confidence 1 1 112356899986 8889999987654333335566777788889999999999999999999999864
Q ss_pred CceEEeCccCCC
Q 037334 240 PKSWCVGPLCLA 251 (263)
Q Consensus 240 ~~v~~VGPl~~~ 251 (263)
+|||+||||++.
T Consensus 217 ~~v~~VGPl~~~ 228 (449)
T PLN02173 217 CPVLTIGPTVPS 228 (449)
T ss_pred CCeeEEcccCch
Confidence 589999999864
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.3e-42 Score=317.36 Aligned_cols=230 Identities=18% Similarity=0.284 Sum_probs=174.9
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHH-cCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLL-RRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVEST 84 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La-~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 84 (263)
.++|||++|||+|||++||++|||+|+ ++ |++|||++|+.|..++.+..... ++|+++.+|+|.. +++|+...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~~~~~~~~--~~i~~~~lp~p~~-~glp~~~~-- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASAQSKFLNS--TGVDIVGLPSPDI-SGLVDPSA-- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhhhhccccC--CCceEEECCCccc-cCCCCCCc--
Confidence 468999999999999999999999998 78 99999999999876654322112 3699999987642 35542111
Q ss_pred CCCCCccchhHHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhcc-cc
Q 037334 85 DKLPSMSLYVPFTRATKLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQN-RL 162 (263)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~-~~ 162 (263)
.....+......+.+.++++++++ .+++|||+|+|++|+.+||+++|||+|+||+++|++++++++++.. .+
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 112233334456778999988875 4789999999999999999999999999999999999888777542 11
Q ss_pred ccCCC-CCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHhhc----
Q 037334 163 LSGVQ-SDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLV---- 237 (263)
Q Consensus 163 ~~~~~-~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~---- 237 (263)
..... ...+.+.+||+|+ ++.+|+|..+.+. ....++.+.+..+++.+|+|||+|||+|||+++++++++.
T Consensus 152 ~~~~~~~~~~~~~iPg~~~--l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP--VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred cccccccCCCCcccCCCCc--cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 10000 1113456899986 8889999755443 3345677788888889999999999999999999999752
Q ss_pred --CCCceEEeCccCCC
Q 037334 238 --GKPKSWCVGPLCLA 251 (263)
Q Consensus 238 --~~~~v~~VGPl~~~ 251 (263)
.++|+|+||||++.
T Consensus 228 ~~~~~~v~~VGPl~~~ 243 (481)
T PLN02992 228 RVARVPVYPIGPLCRP 243 (481)
T ss_pred cccCCceEEecCccCC
Confidence 13689999999864
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-42 Score=314.86 Aligned_cols=227 Identities=23% Similarity=0.308 Sum_probs=168.0
Q ss_pred CCCCCCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCC
Q 037334 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAG 80 (263)
Q Consensus 1 m~~~~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~ 80 (263)
|...+.+.|||++|||+|||+|||++|||+|++| |++|||++|+.|+.+.. ... ++|+++.+| +++|++
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~~~---~~~--~~i~~~~ip-----~glp~~ 69 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFSPS---DDF--TDFQFVTIP-----ESLPES 69 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccccc---cCC--CCeEEEeCC-----CCCCcc
Confidence 7766788999999999999999999999999999 99999999998863211 111 368888886 477763
Q ss_pred CCCCCCCCCccchhHHHHHH-HhcHHHHHHHHhhC-----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHH
Q 037334 81 VESTDKLPSMSLYVPFTRAT-KLMQPHFERALESL-----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVS 154 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~ 154 (263)
... .. ... .+.... ..+.+.++++++++ .+++|||+|+|++|+.++|+++|||+|+||+++|++++++
T Consensus 70 ~~~--~~---~~~-~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~ 143 (451)
T PLN02410 70 DFK--NL---GPI-EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCR 143 (451)
T ss_pred ccc--cc---CHH-HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHH
Confidence 211 11 112 233333 45667777777653 3679999999999999999999999999999999999988
Q ss_pred HHHhccc------cccCCCC-CCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhh
Q 037334 155 RSVGQNR------LLSGVQS-DDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELE 227 (263)
Q Consensus 155 ~~~~~~~------~~~~~~~-~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 227 (263)
+++.... +. ... .++...+||+|+ ++.+|+|.+.... .......+.. ...+++|+|||+|||+|||
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~iPg~~~--~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE 216 (451)
T PLN02410 144 SVFDKLYANNVLAPL--KEPKGQQNELVPEFHP--LRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTASCLE 216 (451)
T ss_pred HHHHHHHhccCCCCc--cccccCccccCCCCCC--CChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeChHHhh
Confidence 8764321 21 111 122346899986 8889999765432 2223333333 3356789999999999999
Q ss_pred HHHHHHHhhcCCCceEEeCccCCC
Q 037334 228 PLFADHCNLVGKPKSWCVGPLCLA 251 (263)
Q Consensus 228 ~~~l~~l~~~~~~~v~~VGPl~~~ 251 (263)
+++++++++..++|||+||||++.
T Consensus 217 ~~~~~~l~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 217 SSSLSRLQQQLQIPVYPIGPLHLV 240 (451)
T ss_pred HHHHHHHHhccCCCEEEecccccc
Confidence 999999998666799999999754
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=7.7e-42 Score=313.52 Aligned_cols=220 Identities=16% Similarity=0.261 Sum_probs=166.4
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHc-CCCceEEEEeCCCC-chhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLR-RPRVTVTVFTTPAN-RPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVEST 84 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~-~~G~~VT~~~t~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 84 (263)
++|||++|||+|||+|||++|||+|++ + |++|||++|..+ ++++.+.. ...++++++.++ +++|++.+..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~-G~~vT~v~t~~~~~~~~~~~~--~~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTT-GTRVTFATCLSVIHRSMIPNH--NNVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCC-CcEEEEEeccchhhhhhhccC--CCCCCEEEEEcC-----CCCCCccccc
Confidence 369999999999999999999999996 7 999999999965 32222111 111368998886 5788764321
Q ss_pred CCCCCccchhHHHHHHHhcHHHHHHHHhhC----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhcc
Q 037334 85 DKLPSMSLYVPFTRATKLMQPHFERALESL----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQN 160 (263)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~ 160 (263)
. . +....+......+.+.++++++++ ++++|||+|++++|+.+||+++|||+|+|||++|++++++++++..
T Consensus 75 ~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 75 T--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 1 222334444456778888887754 3569999999999999999999999999999999999999877532
Q ss_pred ccccCCCCCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcc--cccEEEEcchhhhhHHHHHHHhhcC
Q 037334 161 RLLSGVQSDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTS--NSYGMIVNSFYELEPLFADHCNLVG 238 (263)
Q Consensus 161 ~~~~~~~~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~--~a~~vlvNTf~eLE~~~l~~l~~~~ 238 (263)
. ...+.+||+|+ ++.+|||+++...+..+.+.+.+.+..+.++ .++|||+|||+|||+++++++++
T Consensus 151 ~--------~~~~~iPglp~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-- 218 (455)
T PLN02152 151 N--------NSVFEFPNLPS--LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-- 218 (455)
T ss_pred C--------CCeeecCCCCC--CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--
Confidence 1 12356999986 8899999987643323334566667777654 36799999999999999999975
Q ss_pred CCceEEeCccCCC
Q 037334 239 KPKSWCVGPLCLA 251 (263)
Q Consensus 239 ~~~v~~VGPl~~~ 251 (263)
.|+|+||||++.
T Consensus 219 -~~v~~VGPL~~~ 230 (455)
T PLN02152 219 -IEMVAVGPLLPA 230 (455)
T ss_pred -CCEEEEcccCcc
Confidence 379999999864
No 9
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-41 Score=310.40 Aligned_cols=230 Identities=19% Similarity=0.253 Sum_probs=172.2
Q ss_pred CCCCCCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCC--ceEEecCCCCCCCCCC
Q 037334 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAA--CCIIDIPYPENVPEIP 78 (263)
Q Consensus 1 m~~~~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~--i~~~~lp~~~~~~~~p 78 (263)
|++ .++|||++|||+|||+|||++|||+|+++ |++|||++|+.|..++.+. .... .+ ++++.+|.+ +++|
T Consensus 1 ~~~--~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~~-~~~~-~~~~v~~~~~p~~---~glp 72 (453)
T PLN02764 1 MGG--LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEHL-NLFP-HNIVFRSVTVPHV---DGLP 72 (453)
T ss_pred CCC--CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhccc-ccCC-CCceEEEEECCCc---CCCC
Confidence 666 67999999999999999999999999999 9999999999987766542 1111 13 445555532 5888
Q ss_pred CCCCCCCCCCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHh
Q 037334 79 AGVESTDKLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVG 158 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 158 (263)
++.++..+.+. ..+..+..++..+++.+++++++. +++|||+|+ ++|+.+||+++|||+|+||+++|++++++++ +
T Consensus 73 ~g~e~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~-~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~ 148 (453)
T PLN02764 73 VGTETVSEIPV-TSADLLMSAMDLTRDQVEVVVRAV-EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P 148 (453)
T ss_pred CcccccccCCh-hHHHHHHHHHHHhHHHHHHHHHhC-CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c
Confidence 77554433331 233456666677889999999987 889999995 9999999999999999999999999998863 1
Q ss_pred ccccccCCCCCCCcccCCCCCC--CccccCCCCCCCC--CCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHH
Q 037334 159 QNRLLSGVQSDDELLTLPEFPW--IKITKKDFDPPIT--DPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHC 234 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~vPg~p~--~~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 234 (263)
. ... ...+||+|. +.++.+|+|++.. ..+..+.+..++.+..+.++++++||+|||+|||+++++++
T Consensus 149 ~------~~~---~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~ 219 (453)
T PLN02764 149 G------GEL---GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYI 219 (453)
T ss_pred c------ccC---CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHH
Confidence 1 110 123588884 2478889997432 11111223455555557788999999999999999999999
Q ss_pred hhcCCCceEEeCccCCC
Q 037334 235 NLVGKPKSWCVGPLCLA 251 (263)
Q Consensus 235 ~~~~~~~v~~VGPl~~~ 251 (263)
++..++|+|+||||++.
T Consensus 220 ~~~~~~~v~~VGPL~~~ 236 (453)
T PLN02764 220 EKHCRKKVLLTGPVFPE 236 (453)
T ss_pred HhhcCCcEEEeccCccC
Confidence 87545789999999764
No 10
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.7e-41 Score=308.99 Aligned_cols=230 Identities=19% Similarity=0.305 Sum_probs=172.2
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh--hhhccC-CCCCceEEecCCCCCCCCC-CCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS--KFLSNS-STAACCIIDIPYPENVPEI-PAGVE 82 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~--~~~~~~-~~~~i~~~~lp~~~~~~~~-p~~~~ 82 (263)
++|||++|||+|||+|||++|||+|++++|++|||++|..++.++. ...... ..++|+++.+|++.. +++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~~l~~~~-- 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDV-DNLVEPD-- 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCcc-ccCCCCC--
Confidence 4799999999999999999999999975499999999987765441 112111 112599999986531 233 111
Q ss_pred CCCCCCCccchhHHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCC-eEEEecccHHHHHHHHHHhcc
Q 037334 83 STDKLPSMSLYVPFTRATKLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFP-RFVFYGMNNYAMSVSRSVGQN 160 (263)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~~~~ 160 (263)
. +....+..+...+.+.++++++++ .+++|||+|+|++|+.+||+++||| +++|++++|+.++++++++..
T Consensus 80 -----~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 80 -----A--TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred -----c--cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 0 223345556678889999999876 5789999999999999999999999 699999999999888887643
Q ss_pred c-cccCCCCC-CCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHhhcC
Q 037334 161 R-LLSGVQSD-DELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLVG 238 (263)
Q Consensus 161 ~-~~~~~~~~-~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 238 (263)
. ....+... .+.+.+||+|+ ++.+|||.++.+. ....+..+.+..+++++|+|||+|||+|||+++++++++..
T Consensus 153 ~~~~~~~~~~~~~~~~vPg~p~--l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 153 DTVVEGEYVDIKEPLKIPGCKP--VGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hcccccccCCCCCeeeCCCCCC--CChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 1 11111001 23467999986 9999999877554 22234555577778999999999999999999999998741
Q ss_pred ------CCceEEeCccCC
Q 037334 239 ------KPKSWCVGPLCL 250 (263)
Q Consensus 239 ------~~~v~~VGPl~~ 250 (263)
++|+|+||||++
T Consensus 229 ~~~~~~~~~v~~VGPl~~ 246 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVR 246 (470)
T ss_pred ccccccCCceEEecCCCC
Confidence 367999999985
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6e-41 Score=307.32 Aligned_cols=231 Identities=21% Similarity=0.310 Sum_probs=167.2
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCC----ceEEEEeCCCCchhhhhhhcc--CCCCCceEEecCCCCCCCCCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPR----VTVTVFTTPANRPFTSKFLSN--SSTAACCIIDIPYPENVPEIPAG 80 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G----~~VT~~~t~~~~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~p~~ 80 (263)
+.|||++|||+|||+|||++|||+|+++ | ++||++++..+...+.+..+. ...++|+++.+|++. +.+++
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCCc
Confidence 4699999999999999999999999999 8 455556666554433221111 111469999988531 11221
Q ss_pred CCCCCCCCCccchhHHHHHHHhcHHHHHHHHhhC---CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHH
Q 037334 81 VESTDKLPSMSLYVPFTRATKLMQPHFERALESL---PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSV 157 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 157 (263)
.. .. ......+......+.+.++++++++ ++++|||+|+|++|+.++|+++|||+|+|||++|+++++++++
T Consensus 79 ~~--~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 79 ST--SR---HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred cc--cc---cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 11 11 0112234444456778888888765 3569999999999999999999999999999999999999987
Q ss_pred hccc-cccCCCCCC-CcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHh
Q 037334 158 GQNR-LLSGVQSDD-ELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCN 235 (263)
Q Consensus 158 ~~~~-~~~~~~~~~-~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 235 (263)
+... ........+ ..+.+||+|. ++.+|||+++.+. ....+..+.+..+.+.++++||+|||+|||++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~v~iPg~p~--l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 154 PTIDETTPGKNLKDIPTVHIPGVPP--MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred HhccccccccccccCCeecCCCCCC--CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 6421 110011111 2356899996 8899999987654 23356777788888899999999999999999999998
Q ss_pred hcC-CCceEEeCccCC
Q 037334 236 LVG-KPKSWCVGPLCL 250 (263)
Q Consensus 236 ~~~-~~~v~~VGPl~~ 250 (263)
+.. .+|||+||||++
T Consensus 230 ~~~~~~~v~~vGPl~~ 245 (451)
T PLN03004 230 EELCFRNIYPIGPLIV 245 (451)
T ss_pred hcCCCCCEEEEeeecc
Confidence 753 368999999985
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=9.9e-41 Score=306.99 Aligned_cols=228 Identities=22% Similarity=0.342 Sum_probs=173.3
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTD 85 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 85 (263)
+++|||++|||+|||+|||++|||+|+++ |++|||+||..+++++.+..+.. ++|+++.+| ++++++.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~~~~~--~~i~~v~lp-----~g~~~~~---- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISATLDPK--LGITFMSIS-----DGQDDDP---- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhccCCC--CCEEEEECC-----CCCCCCc----
Confidence 45799999999999999999999999999 99999999999887766543222 469999886 3454321
Q ss_pred CCCCccchhHHHHHHH-hcHHHHHHHHhhC---CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccc
Q 037334 86 KLPSMSLYVPFTRATK-LMQPHFERALESL---PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNR 161 (263)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~---~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 161 (263)
+ .+ +..+..++. .+.+.++++++++ .+++|||+|++++|+.++|+++|||+|+||++++++++++++++...
T Consensus 73 --~-~~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 --P-RD-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred --c-cc-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 1 12 224455554 6889999998875 24689999999999999999999999999999999999888765421
Q ss_pred c---ccCCCC--CCCcc-cCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHh
Q 037334 162 L---LSGVQS--DDELL-TLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCN 235 (263)
Q Consensus 162 ~---~~~~~~--~~~~~-~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 235 (263)
. ...... ..+.+ .+||+|. ++.+|+|+++.........++.+.+..+...+++|||+|||+|||++++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~--l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 226 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL--LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQ 226 (448)
T ss_pred hccccccccccccccccccCCCCCC--CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHH
Confidence 1 100000 01223 5899986 88999998775432123346777788888899999999999999999999887
Q ss_pred hc----CCCceEEeCccCCC
Q 037334 236 LV----GKPKSWCVGPLCLA 251 (263)
Q Consensus 236 ~~----~~~~v~~VGPl~~~ 251 (263)
+. ..+++|+||||++.
T Consensus 227 ~~~~~~~~~~v~~iGpl~~~ 246 (448)
T PLN02562 227 ASYNNGQNPQILQIGPLHNQ 246 (448)
T ss_pred hhhccccCCCEEEecCcccc
Confidence 42 24679999999764
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.3e-41 Score=307.50 Aligned_cols=224 Identities=21% Similarity=0.313 Sum_probs=167.9
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTD 85 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 85 (263)
+++|||++|||+|||+|||++|||+|+++ |++|||++|+.++.++.+.. .. .++|+++.+++|. .+++|++.+...
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~~-~~-~~~i~~~~i~lP~-~dGLP~g~e~~~ 78 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPLN-LF-PDSIVFEPLTLPP-VDGLPFGAETAS 78 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhcccc-cC-CCceEEEEecCCC-cCCCCCcccccc
Confidence 46899999999999999999999999999 99999999998877665431 11 1358898777664 368887754333
Q ss_pred CCCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccccccC
Q 037334 86 KLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSG 165 (263)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 165 (263)
+.+. .....+..+...+.+.+++++++. +++|||+|+ ++|+.+||+++|||+++||+++|++++++++..
T Consensus 79 ~l~~-~~~~~~~~a~~~l~~~l~~~L~~~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~------- 148 (446)
T PLN00414 79 DLPN-STKKPIFDAMDLLRDQIEAKVRAL-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR------- 148 (446)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH-------
Confidence 2221 112335556677889999999876 889999995 899999999999999999999999999887621
Q ss_pred CCCCCCcccCCCCCC--CccccCCC--CCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHhhcCCCc
Q 037334 166 VQSDDELLTLPEFPW--IKITKKDF--DPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNLVGKPK 241 (263)
Q Consensus 166 ~~~~~~~~~vPg~p~--~~l~~~dl--p~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~ 241 (263)
.. .+ ..+||+|. +.++.+|+ |.++. . ....+.+..+.+++|+|||+|||+|||+++++++++..++|
T Consensus 149 ~~--~~-~~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 219 (446)
T PLN00414 149 AE--LG-FPPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRK 219 (446)
T ss_pred hh--cC-CCCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCC
Confidence 10 01 23578874 22444543 33332 1 13455566677889999999999999999999998855578
Q ss_pred eEEeCccCCCC
Q 037334 242 SWCVGPLCLAV 252 (263)
Q Consensus 242 v~~VGPl~~~~ 252 (263)
||+||||++..
T Consensus 220 v~~VGPl~~~~ 230 (446)
T PLN00414 220 VLLTGPMLPEP 230 (446)
T ss_pred eEEEcccCCCc
Confidence 99999997643
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.4e-40 Score=308.16 Aligned_cols=228 Identities=22% Similarity=0.338 Sum_probs=169.4
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCC----ceEEEEeCCCCch----hhhhhhcc--CCCCCceEEecCCCCCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPR----VTVTVFTTPANRP----FTSKFLSN--SSTAACCIIDIPYPENVPE 76 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G----~~VT~~~t~~~~~----~~~~~~~~--~~~~~i~~~~lp~~~~~~~ 76 (263)
++|||++|||+|||+|||++|||+|++| | +.|||++|..+.. ++.+.+++ ....+|+++.+|.+ .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~ 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----E 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----C
Confidence 5799999999999999999999999999 6 8999999987632 34433221 11125899988753 2
Q ss_pred CCCCCCCCCCCCCccchhHHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHH
Q 037334 77 IPAGVESTDKLPSMSLYVPFTRATKLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSR 155 (263)
Q Consensus 77 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 155 (263)
+|++.+. ....+....+.+.+.++++++++ .+++|||+|+|++|+.+||+++|||+++|||++|+++++++
T Consensus 78 ~p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 78 PPTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred CCCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 3333221 11122223467788999998875 45799999999999999999999999999999999999999
Q ss_pred HHhccc-cccCCCCC-CCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHH
Q 037334 156 SVGQNR-LLSGVQSD-DELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADH 233 (263)
Q Consensus 156 ~~~~~~-~~~~~~~~-~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 233 (263)
+++... ........ .+.+.+||+|. ++.+|||.++.+. .+..+..+....+++.+|+|||+|||+|||++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~iPGlp~--l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 150 RLPALDEEVAVEFEEMEGAVDVPGLPP--VPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhcccccCcccccCcceecCCCCC--CChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 876431 11000001 13456999986 8999999877644 222355666777888999999999999999999999
Q ss_pred HhhcC---C---CceEEeCccCCC
Q 037334 234 CNLVG---K---PKSWCVGPLCLA 251 (263)
Q Consensus 234 l~~~~---~---~~v~~VGPl~~~ 251 (263)
+++.. + +++|+||||++.
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~ 249 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISL 249 (480)
T ss_pred HHhccccccCCCCceEEeCCCccc
Confidence 98742 1 589999999853
No 15
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.3e-40 Score=302.09 Aligned_cols=227 Identities=22% Similarity=0.305 Sum_probs=170.0
Q ss_pred CCCC-CCCCeEEEecCCCCCChHHHHHHHHH--HHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCC
Q 037334 1 MGSI-SSDHHVVLFPFMSKGHIIPILNLAQL--LLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEI 77 (263)
Q Consensus 1 m~~~-~~~~hvv~vp~p~~GHi~P~l~Lak~--La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~ 77 (263)
|++. .++.|||++|||+|||+|||++|||+ |++| |++|||++|+.|++++.+.. .. ...+++..+| +++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~~~~~-~~-~~~~~~~~~~-----~gl 72 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLLSTVE-KP-RRPVDLVFFS-----DGL 72 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhhcccc-CC-CCceEEEECC-----CCC
Confidence 6665 55689999999999999999999999 5689 99999999999877654321 11 1346666554 477
Q ss_pred CCCCCCCCCCCCccchhHHHHHH-HhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHH
Q 037334 78 PAGVESTDKLPSMSLYVPFTRAT-KLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRS 156 (263)
Q Consensus 78 p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 156 (263)
|++.+. . ...+.... +.+.+.+++++++. +++|||+|++++|+.++|+++|||+++||++++++++++++
T Consensus 73 p~~~~~-------~-~~~~~~~~~~~~~~~l~~~l~~~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~ 143 (456)
T PLN02210 73 PKDDPR-------A-PETLLKSLNKVGAKNLSKIIEEK-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYR 143 (456)
T ss_pred CCCccc-------C-HHHHHHHHHHhhhHHHHHHHhcC-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHh
Confidence 765321 1 12344444 46678899999886 89999999999999999999999999999999999998887
Q ss_pred Hhcc-ccccCCCCC-CCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHH-HHHHHHcccccEEEEcchhhhhHHHHHH
Q 037334 157 VGQN-RLLSGVQSD-DELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELF-IDQIVSTSNSYGMIVNSFYELEPLFADH 233 (263)
Q Consensus 157 ~~~~-~~~~~~~~~-~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 233 (263)
++.. .+.. ...+ .+.+.+||+|+ ++.+|||+++.+. .+..+..+ .+..+...++++|++|||+|||++++++
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~Pgl~~--~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 218 (456)
T PLN02210 144 YYMKTNSFP-DLEDLNQTVELPALPL--LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIES 218 (456)
T ss_pred hhhccCCCC-cccccCCeeeCCCCCC--CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHH
Confidence 6432 2221 1111 12356899986 8889999877654 22223333 3444567889999999999999999999
Q ss_pred HhhcCCCceEEeCccCCC
Q 037334 234 CNLVGKPKSWCVGPLCLA 251 (263)
Q Consensus 234 l~~~~~~~v~~VGPl~~~ 251 (263)
+++. +++|+|||+++.
T Consensus 219 l~~~--~~v~~VGPl~~~ 234 (456)
T PLN02210 219 MADL--KPVIPIGPLVSP 234 (456)
T ss_pred Hhhc--CCEEEEcccCch
Confidence 9873 689999999863
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-40 Score=301.78 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=168.5
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTD 85 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 85 (263)
.++|||++|||+|||+|||++|||+|+++ |++|||++|..+..++.+.. ....++++..+++|+ .+++|++.++..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~~~--a~~~~i~~~~l~~p~-~dgLp~g~~~~~ 78 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEHHN--LFPDSIVFHPLTIPP-VNGLPAGAETTS 78 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhccc--CCCCceEEEEeCCCC-ccCCCCCccccc
Confidence 46899999999999999999999999999 99999999998777665421 111357888887653 257887754332
Q ss_pred CCCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccccccC
Q 037334 86 KLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNRLLSG 165 (263)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 165 (263)
++. ......+....+.+.+.+++++++. +++|||+| +++|+.++|+++|||+++||+++|++++ +++++. .
T Consensus 79 ~l~-~~l~~~~~~~~~~~~~~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~--- 149 (442)
T PLN02208 79 DIP-ISMDNLLSEALDLTRDQVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--G--- 149 (442)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--c---
Confidence 221 0122234555677889999999887 89999999 5899999999999999999999998765 544431 0
Q ss_pred CCCCCCcccCCCCCC--CccccCCCCCCCCCCCCCCchHHHHHHH-HHHcccccEEEEcchhhhhHHHHHHHhhcCCCce
Q 037334 166 VQSDDELLTLPEFPW--IKITKKDFDPPITDPEPKGPHFELFIDQ-IVSTSNSYGMIVNSFYELEPLFADHCNLVGKPKS 242 (263)
Q Consensus 166 ~~~~~~~~~vPg~p~--~~l~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v 242 (263)
. ....+||+|. +.++.+|+|.+ +. ....++.+.+. .+...+|+|||+|||+|||+++++++++..++++
T Consensus 150 ~----~~~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v 221 (442)
T PLN02208 150 K----LGVPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKV 221 (442)
T ss_pred c----cCCCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCE
Confidence 0 0123689985 34788899964 22 22234444443 3567889999999999999999999998666889
Q ss_pred EEeCccCCC
Q 037334 243 WCVGPLCLA 251 (263)
Q Consensus 243 ~~VGPl~~~ 251 (263)
|+|||+++.
T Consensus 222 ~~vGpl~~~ 230 (442)
T PLN02208 222 LLTGPMFPE 230 (442)
T ss_pred EEEeecccC
Confidence 999999763
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.8e-39 Score=297.81 Aligned_cols=240 Identities=32% Similarity=0.565 Sum_probs=176.8
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhcc----CCCCCceEEecCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSN----SSTAACCIIDIPYPENVPEIPAGV 81 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~----~~~~~i~~~~lp~~~~~~~~p~~~ 81 (263)
++.|||++|+|+|||+|||++|||+|++| |++|||++|+.+..++++..+. ...-.+++..+++|...+++|++.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 67899999999999999999999999999 9999999999988776654321 110124666667664334788765
Q ss_pred CCCCCCCC------ccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHH
Q 037334 82 ESTDKLPS------MSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSR 155 (263)
Q Consensus 82 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 155 (263)
+.....++ ..++..+......+.+.+++++++. +++|||+|++++|+.++|+++|||+|+||+++|+++++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 44321110 0223334455567888999988876 8999999999999999999999999999999999998887
Q ss_pred HHhccccccCCCCCCCcccCCCCCC-CccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHH
Q 037334 156 SVGQNRLLSGVQSDDELLTLPEFPW-IKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHC 234 (263)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~vPg~p~-~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 234 (263)
++....+........+.+.+||+|+ ++++..|+|.. +. ...+..++....+..+++++|++|||+|||+++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~ 237 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--DE--ESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFY 237 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--CC--chhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHH
Confidence 6653322210011112345899986 56777888852 11 2334455556666788999999999999999999999
Q ss_pred hhcCCCceEEeCccCCC
Q 037334 235 NLVGKPKSWCVGPLCLA 251 (263)
Q Consensus 235 ~~~~~~~v~~VGPl~~~ 251 (263)
++..++++|+||||.+.
T Consensus 238 ~~~~~~~~~~VGPl~~~ 254 (482)
T PLN03007 238 KSFVAKRAWHIGPLSLY 254 (482)
T ss_pred HhccCCCEEEEcccccc
Confidence 87655789999998754
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-38 Score=291.18 Aligned_cols=229 Identities=23% Similarity=0.337 Sum_probs=174.7
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCC
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVES 83 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 83 (263)
+.+.||+++|||+|||+|||++||++|+++ +|++|||++|+.+..++.+... . ++++|+.+| +++|++.+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~--~gi~fv~lp-----~~~p~~~~~ 79 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-P--DNIRFATIP-----NVIPSELVR 79 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-C--CCEEEEECC-----CCCCCcccc
Confidence 567899999999999999999999999986 3899999999998877765321 1 479999887 345543321
Q ss_pred CCCCCCccchhHHHHHH-HhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHhccc
Q 037334 84 TDKLPSMSLYVPFTRAT-KLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVGQNR 161 (263)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 161 (263)
.. +.. .+...+ +.+.+.++++++++ .+++|||+|++++|+.++|+++|||+|+||+++|+.+++++++....
T Consensus 80 ~~-----~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 80 AA-----DFP-GFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred cc-----CHH-HHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 11 222 333333 46778889988875 47899999999999999999999999999999999999888775321
Q ss_pred c---ccCCCC--CCCcc-cCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHHHHHHHh
Q 037334 162 L---LSGVQS--DDELL-TLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCN 235 (263)
Q Consensus 162 ~---~~~~~~--~~~~~-~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 235 (263)
. ...... ..+.+ .+||++. ++.+|+|.++.+. ....++.+.+..+++.++++||+|||+|||++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~--l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSS--TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred hccCCCCccccccCCccccCCCCCC--CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 1 000110 01222 4888886 8889999876543 33346677777888889999999999999999999998
Q ss_pred hcCCCceEEeCccCCC
Q 037334 236 LVGKPKSWCVGPLCLA 251 (263)
Q Consensus 236 ~~~~~~v~~VGPl~~~ 251 (263)
+.+++++|+|||+++.
T Consensus 230 ~~~~~~~~~iGP~~~~ 245 (459)
T PLN02448 230 SKFPFPVYPIGPSIPY 245 (459)
T ss_pred hhcCCceEEecCcccc
Confidence 8655689999999864
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-38 Score=292.40 Aligned_cols=232 Identities=25% Similarity=0.359 Sum_probs=158.9
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCc---eEEEEeCCCCch-hhhhhhcc--CCCCCceEEecCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRV---TVTVFTTPANRP-FTSKFLSN--SSTAACCIIDIPYPENVPEIPA 79 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~---~VT~~~t~~~~~-~~~~~~~~--~~~~~i~~~~lp~~~~~~~~p~ 79 (263)
+++|||++|||+|||+|||++|||+|+++ |. .||+++|..+.. .....++. ...++|+|+.||++. + |+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PP 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Cc
Confidence 56899999999999999999999999999 83 577777765432 11111111 111469999998642 1 22
Q ss_pred CCCCCCCCCCccchhHHHHHHHhcHHHHHHHHhhC--------C-CCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHH
Q 037334 80 GVESTDKLPSMSLYVPFTRATKLMQPHFERALESL--------P-RVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYA 150 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--------~-~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~ 150 (263)
+.+.... .....+......+.+.+++.++++ + +++|||+|+|++|+.+||+++|||+|+|||++|++
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 77 PMELFVK----ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred ccccccc----chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 1111010 111122222334444444444332 1 46999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-ccccCC--C-CCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhh
Q 037334 151 MSVSRSVGQN-RLLSGV--Q-SDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYEL 226 (263)
Q Consensus 151 ~~~~~~~~~~-~~~~~~--~-~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 226 (263)
++++++++.. ...... . ...+.+.+||+|. .++..|+|.++.+. . .++.+.+..+++++++|||+|||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~-~l~~~dlp~~~~~~--~--~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVN-SVPTKVLPPGLFMK--E--SYEAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCC-CCChhhCchhhhCc--c--hHHHHHHHHHhhcccCEeeeccHHHH
Confidence 9999887642 111000 1 0113456999953 38889999866543 1 25566677788899999999999999
Q ss_pred hHHHHHHHhhcC--CCceEEeCccCCC
Q 037334 227 EPLFADHCNLVG--KPKSWCVGPLCLA 251 (263)
Q Consensus 227 E~~~l~~l~~~~--~~~v~~VGPl~~~ 251 (263)
|+++++++++.. .+++|+||||++.
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~ 254 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSL 254 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEecccccc
Confidence 999999997641 2689999999864
No 20
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-37 Score=286.83 Aligned_cols=231 Identities=21% Similarity=0.353 Sum_probs=165.0
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCC--ceEEEEeCCCCc-hhhhhhhcc--CCCCCceEEecCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPR--VTVTVFTTPANR-PFTSKFLSN--SSTAACCIIDIPYPENVPEIPAG 80 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G--~~VT~~~t~~~~-~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~p~~ 80 (263)
.+.|||++|||+|||+|||++|||+|+++ | ++|||++|+.+. ..+.+.++. ...++|+|+.||..+ ..++.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~ 77 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE---EKPTL 77 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC---CCCcc
Confidence 35799999999999999999999999999 8 999999999876 333322221 111469999998321 11210
Q ss_pred CCCCCCCCCccchhHHHHHHHhc----HHHHHHHHhhC----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHH
Q 037334 81 VESTDKLPSMSLYVPFTRATKLM----QPHFERALESL----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMS 152 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~ 152 (263)
.... +....+....+.+ ++.+++++++. ++++|||+|+|++|+.+||+++|||+|+|||++|++++
T Consensus 78 -~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GGTQ-----SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -cccc-----CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 0111 1222333333344 56677777643 24599999999999999999999999999999999999
Q ss_pred HHHHHhccc-cccCCC-C-CCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhhHH
Q 037334 153 VSRSVGQNR-LLSGVQ-S-DDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELEPL 229 (263)
Q Consensus 153 ~~~~~~~~~-~~~~~~-~-~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 229 (263)
++++++... +..... . .++.+.+||+++ +++.+|||+++.+. .. +..+.+..+.++++++||+|||+|||.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~-~l~~~dlp~~~~~~--~~--~~~~~~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVN-PVPANVLPSALFVE--DG--YDAYVKLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCC-CCChHHCcchhcCC--cc--HHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 988875431 110000 0 113457999932 39999999877533 22 5556677778899999999999999999
Q ss_pred HHHHHhhc-CCCceEEeCccCCC
Q 037334 230 FADHCNLV-GKPKSWCVGPLCLA 251 (263)
Q Consensus 230 ~l~~l~~~-~~~~v~~VGPl~~~ 251 (263)
+++++++. ..+++|+||||++.
T Consensus 227 ~~~~~~~~~~~p~v~~VGPl~~~ 249 (468)
T PLN02207 227 SVNHFLDEQNYPSVYAVGPIFDL 249 (468)
T ss_pred HHHHHHhccCCCcEEEecCCccc
Confidence 99999752 23679999999864
No 21
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-37 Score=289.47 Aligned_cols=226 Identities=21% Similarity=0.294 Sum_probs=163.3
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCC--ceEEEEeCCCCchhhh---hhhcc---CCCCCceEEecCCCCCCCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPR--VTVTVFTTPANRPFTS---KFLSN---SSTAACCIIDIPYPENVPEIP 78 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G--~~VT~~~t~~~~~~~~---~~~~~---~~~~~i~~~~lp~~~~~~~~p 78 (263)
|.|||++|||+|||++||++|||+|+++ | ++|||++|+.|+.++. +..+. ...++|+++.+|++ .+
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-----~~ 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG-----DQ 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----CC
Confidence 6799999999999999999999999999 8 9999999998865431 11111 11146999998753 22
Q ss_pred CCCCCCCCCCCccchhHHHHHH-HhcHHHHHHHHhhC-----CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHHHH
Q 037334 79 AGVESTDKLPSMSLYVPFTRAT-KLMQPHFERALESL-----PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMS 152 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-----~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~ 152 (263)
+. ... ..+..+.... ..+.+.+++++.+. ++++|||+|+|++|+.+||+++|||+|+|||++|++++
T Consensus 76 ~~----~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~ 148 (481)
T PLN02554 76 PT----TED---PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLG 148 (481)
T ss_pred Cc----ccc---hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHH
Confidence 11 000 1111222222 34556666655431 23589999999999999999999999999999999999
Q ss_pred HHHHHhccc-c--ccCCCC-CC-CcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHHcccccEEEEcchhhhh
Q 037334 153 VSRSVGQNR-L--LSGVQS-DD-ELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVSTSNSYGMIVNSFYELE 227 (263)
Q Consensus 153 ~~~~~~~~~-~--~~~~~~-~~-~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 227 (263)
++++++... . ...... +. +.+.+||++. +++.+|||+++.+. .+++.+.+..+.+++++|||+|||+|||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~-pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe 223 (481)
T PLN02554 149 LQLHVQMLYDEKKYDVSELEDSEVELDVPSLTR-PYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELE 223 (481)
T ss_pred HHHhhhhhccccccCccccCCCCceeECCCCCC-CCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHh
Confidence 999886531 1 100011 11 2456999852 38889999876532 2466777888889999999999999999
Q ss_pred HHHHHHHhhc--CCCceEEeCccCC
Q 037334 228 PLFADHCNLV--GKPKSWCVGPLCL 250 (263)
Q Consensus 228 ~~~l~~l~~~--~~~~v~~VGPl~~ 250 (263)
+++++++++. ..+++|+|||++.
T Consensus 224 ~~~~~~l~~~~~~~~~v~~vGpl~~ 248 (481)
T PLN02554 224 PQALKFFSGSSGDLPPVYPVGPVLH 248 (481)
T ss_pred HHHHHHHHhcccCCCCEEEeCCCcc
Confidence 9999999863 2368999999954
No 22
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.54 E-value=4.5e-16 Score=145.61 Aligned_cols=243 Identities=21% Similarity=0.196 Sum_probs=129.0
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDK 86 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 86 (263)
+.|++++|+|++||++|+++||++|+++ ||+||++++..+...............+.....++....++++.+.+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDD- 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHH-
Confidence 5799999999999999999999999999 99999999987655432211000000011111111110122333221110
Q ss_pred CCCccchhHHHHHH-HhcHHHHHHHHhhC-CCCcEEEEcCcchhhHHHHHHhC-CCeEEEecccHHHHHHHHHHhcc-cc
Q 037334 87 LPSMSLYVPFTRAT-KLMQPHFERALESL-PRVSFMVSDGFLWWTLDSANKFG-FPRFVFYGMNNYAMSVSRSVGQN-RL 162 (263)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-~~~~~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~~~~-~~ 162 (263)
.........+...+ ..+........... ..+||+|+|.++.|...+|.+.+ ++..++++.++...++..+.+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p 162 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVP 162 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccC
Confidence 00000111222222 12223233322221 23999999999999999998885 99999999999887776544332 12
Q ss_pred ccCCCCCCCcccCCCCCCCccccCCCCCCCCCCCCCCchHHHHHHHHHH----cccccEEEEcc-hhhhhHHHHHHHhhc
Q 037334 163 LSGVQSDDELLTLPEFPWIKITKKDFDPPITDPEPKGPHFELFIDQIVS----TSNSYGMIVNS-FYELEPLFADHCNLV 237 (263)
Q Consensus 163 ~~~~~~~~~~~~vPg~p~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~a~~vlvNT-f~eLE~~~l~~l~~~ 237 (263)
........+...+++... .+...+++...................... ...+++++.|| |.++|+.....++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~ 241 (496)
T KOG1192|consen 163 SPFSLSSGDDMSFPERVP-NLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPR 241 (496)
T ss_pred cccCccccccCcHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCC
Confidence 100000001112222211 122233333221110000000111111111 14466788888 999999988777443
Q ss_pred -CCCceEEeCccCCCC
Q 037334 238 -GKPKSWCVGPLCLAV 252 (263)
Q Consensus 238 -~~~~v~~VGPl~~~~ 252 (263)
..+++++|||+....
T Consensus 242 ~~~~~v~~IG~l~~~~ 257 (496)
T KOG1192|consen 242 PLLPKVIPIGPLHVKD 257 (496)
T ss_pred CCCCCceEECcEEecC
Confidence 367899999998763
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.53 E-value=1.9e-14 Score=131.15 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCC-
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDK- 86 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~- 86 (263)
+||+++++|++||++|++.||++|.++ ||+|||+++......+.. .+++|+.++.. .+........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~~v~~-------~G~~~~~~~~~-----~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLVEA-------AGLEFVPVGGD-----PDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHHHHHH-------cCCceeeCCCC-----HHHHHhhhhhc
Confidence 489999999999999999999999999 999999999966554442 46777766521 1110000000
Q ss_pred ----CCCccch----hHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccH
Q 037334 87 ----LPSMSLY----VPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 87 ----~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 148 (263)
....... ..+......+...+.+.+++. ++||||+|.++.|+..+|+++|||++.+++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDW-GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 0000011 111111222223333334443 899999999999999999999999999988764
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.47 E-value=1.7e-13 Score=124.61 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=81.0
Q ss_pred ecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccc
Q 037334 13 FPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSL 92 (263)
Q Consensus 13 vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~ 92 (263)
+.+|++||++|++.||++|.++ ||+|||++++.+.+.+.+ .++.++.++.... .++..+..........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~-------~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 69 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAERVEA-------AGAEFVLYGSALP---PPDNPPENTEEEPIDI 69 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHHHHHH-------cCCEEEecCCcCc---cccccccccCcchHHH
Confidence 4589999999999999999999 999999999887766654 4677777653210 0111000000000111
Q ss_pred hhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecc
Q 037334 93 YVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 146 (263)
+..+......+...+.+++++. ++||||+|.++.|+..+|+++|||++.+++.
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~~-~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKGD-RPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 2222222222233445555554 8999999999999999999999999988654
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.10 E-value=4e-11 Score=93.15 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCC
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPS 89 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 89 (263)
|++...+..||++|++.||++|.++ ||+|++.+.....+.+.+ .++.|+.++.. ..++........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~~v~~-------~Gl~~~~~~~~---~~~~~~~~~~~~--- 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRERVEA-------AGLEFVPIPGD---SRLPRSLEPLAN--- 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHHHHHH-------TT-EEEESSSC---GGGGHHHHHHHH---
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccceecccc-------cCceEEEecCC---cCcCcccchhhh---
Confidence 6889999999999999999999999 999999999877766643 47899987621 011110000000
Q ss_pred ccchhHHHHHHHhcHHHHHHHHhhC-------CCCcEEEEcCcchhhHHHHHHhCCCeEEEecccH
Q 037334 90 MSLYVPFTRATKLMQPHFERALESL-------PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 148 (263)
.................+++...+. ...++++.+.....+..+|+++|||++.....+-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 0000111111222233333333222 1467888888888889999999999998776653
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.25 E-value=3.5e-06 Score=79.36 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=77.0
Q ss_pred CeEEEe-cCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCC--
Q 037334 8 HHVVLF-PFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVEST-- 84 (263)
Q Consensus 8 ~hvv~v-p~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~-- 84 (263)
.+|+++ |.++.+|.+-+-.+++.|++| ||+||++++.... ..... .. .+++.+.++... +.........
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~-~~~~~--~~--~~~~~i~~~~~~--~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRV-YYASH--LC--GNITEIDASLSV--EYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccc-ccccC--CC--CCEEEEEcCCCh--HHHHHHHhhhhH
Confidence 456655 999999999999999999999 9999999775311 10000 01 456655543211 0101000000
Q ss_pred ----CCCCC-ccc----hhHHHHHHH-hc-HHHHHHHHh--hCCCCcEEEEcCcchhhHHHHHHh-CCCeEEEecccH
Q 037334 85 ----DKLPS-MSL----YVPFTRATK-LM-QPHFERALE--SLPRVSFMVSDGFLWWTLDSANKF-GFPRFVFYGMNN 148 (263)
Q Consensus 85 ----~~~~~-~~~----~~~~~~~~~-~~-~~~l~~~l~--~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~f~~~~a 148 (263)
....+ ... +..+...++ .+ .+.+.++++ +. ++|+||+|.+...+..+|+.+ ++|.+..++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00000 000 011112222 12 356677776 43 799999998888888899999 999776666443
No 27
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.16 E-value=1.8e-05 Score=69.72 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=69.1
Q ss_pred eEEEecC-CCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPF-MSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKL 87 (263)
Q Consensus 9 hvv~vp~-p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 87 (263)
||++... -|.||+.-.+.||++| + ||+|+|++.....+.+.. .+....++. +....... .
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~~~~-~- 62 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPEFLKP--------RFPVREIPG------LGPIQENG-R- 62 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHHHhcc--------ccCEEEccC------ceEeccCC-c-
Confidence 4555444 4899999999999999 8 999999998754333321 133333321 11100000 0
Q ss_pred CCccchhHHHHH------HHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHH
Q 037334 88 PSMSLYVPFTRA------TKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNY 149 (263)
Q Consensus 88 ~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 149 (263)
.+........ .......+.+++++. +||+||+|. .+++...|+..|||++.+......
T Consensus 63 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 63 --LDRWKTVRNNIRWLARLARRIRREIRWLREF-RPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred --cchHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 1111111111 112223344455554 899999995 444678889999999987766654
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.16 E-value=3.5e-06 Score=77.21 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIP 69 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp 69 (263)
+.+|+++..|..||++|.+.||++|..+ ||+|+|+++....+.+.+. ++.|..++
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~a-------g~~f~~~~ 55 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAA-------GLAFVAYP 55 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHHHHHHh-------Ccceeecc
Confidence 3689999999999999999999999999 9999999999887776652 35566554
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.82 E-value=0.0002 Score=63.45 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=66.2
Q ss_pred EEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCce-EEecCCCCCCCCCCCCCCCCCCCCC
Q 037334 11 VLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACC-IIDIPYPENVPEIPAGVESTDKLPS 89 (263)
Q Consensus 11 v~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~~~p~~~~~~~~~~~ 89 (263)
+.+.-.|.||+.|.+.++++|.+ ||+|+|+++......+.. .++. +..+| ++.-...+ ..+
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~-------~~~~~~~~~p------~~~~~~~~-~~~-- 65 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISK-------YGFKVFETFP------GIKLKGED-GKV-- 65 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhh-------hcCcceeccC------CceEeecC-CcC--
Confidence 34566788999999999999985 899999987652222221 1222 22222 11100000 000
Q ss_pred ccchhHHHH--HH-HhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEeccc
Q 037334 90 MSLYVPFTR--AT-KLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 90 ~~~~~~~~~--~~-~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 147 (263)
+....... .. ...-....+++++. +||+||+| +-..+..+|+.+|||++.+.-+.
T Consensus 66 -~~~~~l~~~~~~~~~~~~~~~~~l~~~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 66 -NIVKTLRNKEYSPKKAIRREINIIREY-NPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred -cHHHHHHhhccccHHHHHHHHHHHHhc-CCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 11111110 00 01112234566665 89999999 55667889999999999766554
No 30
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.66 E-value=9.1e-05 Score=69.62 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=28.6
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPY 70 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~ 70 (263)
+|+++|. +.+|.++|..+++.|++| ||+||++++.... .+... .. .+++++.++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~-~~~~~--~~--~~~~~~~~~~ 56 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPSS-SLNPS--KP--SNIRFETYPD 56 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHH-T----------S-CCEEEE--
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeeccc-ccccc--cc--cceeeEEEcC
Confidence 6888885 789999999999999999 9999999875321 11110 11 4577777653
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.15 E-value=0.0064 Score=54.78 Aligned_cols=118 Identities=11% Similarity=0.031 Sum_probs=68.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLP 88 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~ 88 (263)
+|++..-..-||+.|.+.+|++|.++ ||+|+|+++..-.+. ..+ +. .++.+..++. .++.. .
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~e~--~l~-~~--~g~~~~~~~~----~~l~~----~---- 64 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGIEK--TII-EK--ENIPYYSISS----GKLRR----Y---- 64 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcccc--ccC-cc--cCCcEEEEec----cCcCC----C----
Confidence 45555555579999999999999999 999999987653221 011 11 2466666642 12211 0
Q ss_pred CccchhHHHHHHHhcH--HHHHHHHhhCCCCcEEEEcCcchh--hHHHHHHhCCCeEEEeccc
Q 037334 89 SMSLYVPFTRATKLMQ--PHFERALESLPRVSFMVSDGFLWW--TLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 89 ~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~ 147 (263)
..+..+......+. -....++++. +||+||..--... +.-.|+-+|+|.++.-...
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~i~~~~-kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~ 124 (352)
T PRK12446 65 --FDLKNIKDPFLVMKGVMDAYVRIRKL-KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM 124 (352)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC
Confidence 01111111111112 2223456775 9999999653322 4666777899998655544
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.034 Score=50.18 Aligned_cols=120 Identities=19% Similarity=0.112 Sum_probs=70.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCc-eEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRV-TVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKL 87 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~-~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 87 (263)
.|++.--..-||+.|.+.|+..|.++ |. +|.++.+....+.... .. .++.++.|+.. ++... ...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e~~l~---~~--~~~~~~~I~~~----~~~~~-~~~--- 67 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLEAFLV---KQ--YGIEFELIPSG----GLRRK-GSL--- 67 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccceeeec---cc--cCceEEEEecc----ccccc-CcH---
Confidence 45666667789999999999999999 99 5777756543332111 11 35777777631 22211 000
Q ss_pred CCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch--hhHHHHHHhCCCeEEEeccc
Q 037334 88 PSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW--WTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~ 147 (263)
..+...+... ...-..++++++. +||+||.=.-+. .+.-.|..+|||.++--+-.
T Consensus 68 ---~~~~~~~~~~-~~~~~a~~il~~~-kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~ 124 (357)
T COG0707 68 ---KLLKAPFKLL-KGVLQARKILKKL-KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA 124 (357)
T ss_pred ---HHHHHHHHHH-HHHHHHHHHHHHc-CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC
Confidence 1111111111 1123455667776 999999954333 34455677899998755443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.60 E-value=0.049 Score=48.27 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCC
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPS 89 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 89 (263)
|++..--.-||+.-.+.||+.|.++ ||+|++++....... ... .. .++++..++.+ ++... ..
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~--~~~-~~--~~~~~~~~~~~----~~~~~----~~--- 64 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLEA--RLV-PK--AGIPLHTIPVG----GLRRK----GS--- 64 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh--hcc-cc--cCCceEEEEec----CcCCC----Ch---
Confidence 4555555679999999999999999 999999987642111 001 01 25677766532 11110 00
Q ss_pred ccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCc--chhhHHHHHHhCCCeEEE
Q 037334 90 MSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGF--LWWTLDSANKFGFPRFVF 143 (263)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~--~~~~~~vA~~lgiP~v~f 143 (263)
...+..+.... .....+.+++++. +||+|++..- ..++...|+..|+|.++.
T Consensus 65 ~~~~~~~~~~~-~~~~~~~~~i~~~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 65 LKKLKAPFKLL-KGVLQARKILKKF-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhc-CCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 01111111111 1123455666775 8999998752 233456678889998864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.25 E-value=0.12 Score=45.76 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=67.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLP 88 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~ 88 (263)
+|+++.--..||+...++||+.|.++ ||+|++++...... .... .. .+++++.++.. ... + . ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~~--~~~~-~~--~g~~~~~i~~~----~~~-~---~-~~- 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGLE--KRLV-PK--AGIEFYFIPVG----GLR-R---K-GS- 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcch--hccc-cc--CCCceEEEecc----CcC-C---C-Ch-
Confidence 67888888889999778999999999 99999997643211 0000 01 35666666521 110 0 0 00
Q ss_pred CccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch--hhHHHHHHhCCCeEEE
Q 037334 89 SMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW--WTLDSANKFGFPRFVF 143 (263)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f 143 (263)
...+....... .....+.+++++. +||+|++..-.. ++.-.++..|+|.+.+
T Consensus 66 -~~~l~~~~~~~-~~~~~l~~~i~~~-~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 66 -FRLIKTPLKLL-KAVFQARRILKKF-KPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHHhc-CCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 01111111111 1223456667775 999999875332 3344567789999753
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.19 E-value=0.13 Score=45.93 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=68.6
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKL 87 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 87 (263)
++|+++.-..-||..-++.|++.|.++ ||+|++++....... ... .. .+++++.++.+ ++...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~~--~~~-~~--~g~~~~~~~~~----~~~~~------- 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGMEA--RLV-PK--AGIEFHFIPSG----GLRRK------- 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchhh--hcc-cc--CCCcEEEEecc----CcCCC-------
Confidence 467888776679999999999999999 999999988642111 000 01 35666666531 11110
Q ss_pred CCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCc-chhh-HHHHHHhCCCeEEE
Q 037334 88 PSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGF-LWWT-LDSANKFGFPRFVF 143 (263)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~-~~~~-~~vA~~lgiP~v~f 143 (263)
............ -.....+.+++++. +||+|++... ..|. .-+++..++|.++.
T Consensus 65 ~~~~~l~~~~~~-~~~~~~~~~~ik~~-~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 65 GSLANLKAPFKL-LKGVLQARKILKRF-KPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHhc-CCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 000001111111 11123455666765 8999999963 3444 44456678998765
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.32 E-value=0.21 Score=43.40 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchh
Q 037334 15 FMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYV 94 (263)
Q Consensus 15 ~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~ 94 (263)
--|.||+.=.+.||+.|.++ |++|+|++.......... +. . .++.+..++.+ .+ .
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~-g~~v~f~~~~~~~~~~~~-i~-~--~g~~v~~~~~~-------~~-------~------ 65 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQ-GAEVAFACKPLPGDLIDL-LL-S--AGFPVYELPDE-------SS-------R------ 65 (279)
T ss_pred cccccHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHH-HH-H--cCCeEEEecCC-------Cc-------h------
Confidence 34789999999999999999 999999988754322221 11 1 34555555411 00 0
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhh--HHHHHHhCCCeEEEe
Q 037334 95 PFTRATKLMQPHFERALESLPRVSFMVSDGFLWWT--LDSANKFGFPRFVFY 144 (263)
Q Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~f~ 144 (263)
. .-...+.+++++. ++|+||.|.+..-. ....++.+.+.+++-
T Consensus 66 --~----~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iD 110 (279)
T TIGR03590 66 --Y----DDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVID 110 (279)
T ss_pred --h----hhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEe
Confidence 0 0012255556664 89999999764211 233344565555543
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=95.19 E-value=0.098 Score=47.69 Aligned_cols=111 Identities=9% Similarity=0.030 Sum_probs=64.0
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKL 87 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 87 (263)
++|++..--.-||+.|. .|++.|.++ |.+|+|+.+... .+++..- . ..+.+..++. -|+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~--~m~~~g~-~--~~~~~~~l~v----~G~~--------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP--RMAAEGC-E--VLYSMEELSV----MGLR--------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH--HHHhCcC-c--cccChHHhhh----ccHH---------
Confidence 46777777778999999 999999999 999999986532 3332100 0 1122222221 1111
Q ss_pred CCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEE-cCcc-hh-hHHHHHHhCCCeEEE
Q 037334 88 PSMSLYVPFTRATKLMQPHFERALESLPRVSFMVS-DGFL-WW-TLDSANKFGFPRFVF 143 (263)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~-D~~~-~~-~~~vA~~lgiP~v~f 143 (263)
+.+..+... ........+++++. +||+||. |.-. ++ ....|+.+|||.+.+
T Consensus 66 ---~~l~~~~~~-~~~~~~~~~~l~~~-kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 66 ---EVLGRLGRL-LKIRKEVVQLAKQA-KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred ---HHHHHHHHH-HHHHHHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 111111111 12223556667775 8998765 7422 12 234678899999987
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.87 E-value=0.7 Score=42.43 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTD 85 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 85 (263)
++.+|+++.....|+-.=+..+|+.|+++ ||+||+++....... .... .. .++.++.++.. +.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~-~~~~-~~--~~v~~~~~~~~------~~~---~~ 67 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPH-DEIL-SN--PNITIHPLPPP------PQR---LN 67 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCC-HHHh-cC--CCEEEEECCCC------ccc---cc
Confidence 45678888888888888889999999999 999999986532111 1000 11 46777776521 100 00
Q ss_pred CCCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcC----cchhhHHH-HHHhCCCeEEEe
Q 037334 86 KLPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDG----FLWWTLDS-ANKFGFPRFVFY 144 (263)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~----~~~~~~~v-A~~lgiP~v~f~ 144 (263)
... ..+..+..........+..++.. .++|+|++-. ...+...+ ++..|+|.++-|
T Consensus 68 ~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 68 KLP--FLLFAPLKVLWQFFSLLWLLYKL-RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred cch--HHHHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 000 11111111112222333444555 3899988732 22333333 455699987643
No 39
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.78 E-value=0.86 Score=41.33 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHHHH--
Q 037334 23 PILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRAT-- 100 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 100 (263)
++-+||+.|+++ ||+|++++....... . .+++.+.++... .... +.. .....+....
T Consensus 12 ~~~~la~~L~~~-G~~v~~~~~~~~~~~-------~--~~v~~~~~~~~~----~~~~----~~~---~~~~~~~~~~~~ 70 (396)
T cd03818 12 QFRHLAPALAAQ-GHEVVFLTEPNAAPP-------P--GGVRVVRYRPPR----GPTS----GTH---PYLREFEEAVLR 70 (396)
T ss_pred hHHHHHHHHHHC-CCEEEEEecCCCCCC-------C--CCeeEEEecCCC----CCCC----CCC---ccchhHHHHHHH
Confidence 367899999999 999999987754211 1 147777665221 1110 110 1122222222
Q ss_pred -HhcHHHHHHHH-hhCCCCcEEEEcCcchhhHHHHHHh-CCCeEEEe
Q 037334 101 -KLMQPHFERAL-ESLPRVSFMVSDGFLWWTLDSANKF-GFPRFVFY 144 (263)
Q Consensus 101 -~~~~~~l~~~l-~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~f~ 144 (263)
..+...+..+. +.. +||.|++-..++++..+.+.+ ++|.+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~-~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 71 GQAVARALLALRAKGF-RPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 22223333332 232 799999987666666666665 58887644
No 40
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.90 E-value=0.17 Score=38.69 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHh
Q 037334 23 PILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRATKL 102 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 102 (263)
=+.+|++.|+++ ||+||+++.......-. . .. .+++++.++.+. .+. .. .... +.
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~--~-~~--~~~~~~~~~~~~----~~~---~~------~~~~-~~----- 60 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPEDDE--E-EE--DGVRVHRLPLPR----RPW---PL------RLLR-FL----- 60 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG-S--E-EE--TTEEEEEE--S-----SSS---GG------GHCC-HH-----
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCcccc--c-cc--CCceEEeccCCc----cch---hh------hhHH-HH-----
Confidence 367899999999 99999999764433211 0 11 467888776431 110 00 0011 11
Q ss_pred cHHHHHHHH--hhCCCCcEEEEcCcch-hhHHHHH-HhCCCeEEEe
Q 037334 103 MQPHFERAL--ESLPRVSFMVSDGFLW-WTLDSAN-KFGFPRFVFY 144 (263)
Q Consensus 103 ~~~~l~~~l--~~~~~~~~vI~D~~~~-~~~~vA~-~lgiP~v~f~ 144 (263)
..+.+++ ++ .++|+|.+-.... +...+++ +.++|.++-.
T Consensus 61 --~~~~~~l~~~~-~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 --RRLRRLLAARR-ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp --HHHHHHCHHCT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred --HHHHHHHhhhc-cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2334444 44 3899887665432 4455566 7788887544
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.10 E-value=0.6 Score=41.96 Aligned_cols=113 Identities=10% Similarity=0.081 Sum_probs=61.6
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKL 87 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 87 (263)
++|++..----||+.|.+ +++.|.++ ++++.++..... .+....- . ..+.++.++. .++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~-~~~~~~~~~~~~--~~~~~~~-~--~~~~~~~l~~----~g~---------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKAR-APNLEFVGVGGP--RMQAAGC-E--SLFDMEELAV----MGL---------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhc-CCCcEEEEEccH--HHHhCCC-c--cccCHHHhhh----ccH----------
Confidence 367777777789999999 99999987 777777764431 2322110 0 1122222211 000
Q ss_pred CCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEE-cCcchhh--HHHHHHhCCCeEEEec
Q 037334 88 PSMSLYVPFTRATKLMQPHFERALESLPRVSFMVS-DGFLWWT--LDSANKFGFPRFVFYG 145 (263)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~-D~~~~~~--~~vA~~lgiP~v~f~~ 145 (263)
.+.+..+.. .-.....+++++++. +||+|+. ++-..|. ...|++.|||.+.+..
T Consensus 61 --~~~~~~~~~-~~~~~~~~~~~l~~~-kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 61 --VEVLPRLPR-LLKIRRRLKRRLLAE-PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 010111111 112234567777776 9999765 4322343 4457788999887643
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=92.70 E-value=1.2 Score=39.70 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
-|+-..+.+||+.|+.+ ||+|+++++......... .....++.++.++.. +....... .....+.
T Consensus 21 GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~ 85 (398)
T cd03800 21 GGQNVYVLELARALARL-GHEVDIFTRRIDDALPPI---VELAPGVRVVRVPAG------PAEYLPKE-----ELWPYLD 85 (398)
T ss_pred CceeehHHHHHHHHhcc-CceEEEEEecCCcccCCc---cccccceEEEecccc------cccCCChh-----hcchhHH
Confidence 47888999999999999 999999987543221110 011145666666531 11000000 0111111
Q ss_pred HHHHhcHHHHHHHHhhC-CCCcEEEEcCcc-h-hhHHHHHHhCCCeEEE
Q 037334 98 RATKLMQPHFERALESL-PRVSFMVSDGFL-W-WTLDSANKFGFPRFVF 143 (263)
Q Consensus 98 ~~~~~~~~~l~~~l~~~-~~~~~vI~D~~~-~-~~~~vA~~lgiP~v~f 143 (263)
.....+.+.+... .++|+|++.... . ++...++++|+|++..
T Consensus 86 ----~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 86 ----EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred ----HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 1112222333331 279999887533 3 3466778899998753
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=92.38 E-value=1.5 Score=39.33 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCCCeEEEecC--CCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCC
Q 037334 5 SSDHHVVLFPF--MSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGV 81 (263)
Q Consensus 5 ~~~~hvv~vp~--p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~ 81 (263)
++..+|+++.- .|-||+-=++..|..|... .|++|++++.......+.- . .++.++.||.-.. ...|
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~----~--~gVd~V~LPsl~k---~~~G- 76 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG----P--AGVDFVKLPSLIK---GDNG- 76 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC----c--ccCceEecCceEe---cCCC-
Confidence 34568888874 7889999999999999885 4999999998765433221 1 5799999883210 1111
Q ss_pred CCCC-CCCCccchhHHHHHHHhcH-HHHHHHHhhCCCCcEEEEcCcchh
Q 037334 82 ESTD-KLPSMSLYVPFTRATKLMQ-PHFERALESLPRVSFMVSDGFLWW 128 (263)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~vI~D~~~~~ 128 (263)
+... +. ..+ .+.+. .++ ..+....+.. +||.+|+|.+-..
T Consensus 77 ~~~~~d~-~~~-l~e~~----~~Rs~lil~t~~~f-kPDi~IVd~~P~G 118 (400)
T COG4671 77 EYGLVDL-DGD-LEETK----KLRSQLILSTAETF-KPDIFIVDKFPFG 118 (400)
T ss_pred ceeeeec-CCC-HHHHH----HHHHHHHHHHHHhc-CCCEEEEeccccc
Confidence 1110 10 011 12222 222 3344455554 9999999987544
No 44
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.15 E-value=3.5 Score=31.08 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=58.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCC
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPS 89 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 89 (263)
|+++.--..+| ..++++.|.++ |++|++++.......... . .++.+..++.+ - .
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~~~~~----~--~~i~~~~~~~~-------~--k------- 55 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYEKYEI----I--EGIKVIRLPSP-------R--K------- 55 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCchhhhH----h--CCeEEEEecCC-------C--C-------
Confidence 55555555556 56889999999 999999999543322111 1 46777766421 0 0
Q ss_pred ccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch-hh-HHH-HHHhC-CCeEE
Q 037334 90 MSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW-WT-LDS-ANKFG-FPRFV 142 (263)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~-~~-~~v-A~~lg-iP~v~ 142 (263)
..+. +. . +. .+.+++++. +||.|.+-...+ +. ..+ ++..| +|.+.
T Consensus 56 -~~~~-~~---~-~~-~l~k~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 56 -SPLN-YI---K-YF-RLRKIIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred -ccHH-HH---H-HH-HHHHHhccC-CCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 0111 11 1 22 567778776 899986665543 33 333 45567 66653
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=92.11 E-value=1.5 Score=40.76 Aligned_cols=41 Identities=24% Similarity=0.146 Sum_probs=31.0
Q ss_pred CCCCeEEEecCC----C-CCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 5 SSDHHVVLFPFM----S-KGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 5 ~~~~hvv~vp~p----~-~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
+++.||+++-.+ . -|=-+=+.+|++.|.++ ||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~-G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREM-GDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 456789888432 2 24346778999999999 99999999764
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=91.82 E-value=3.1 Score=36.02 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
-|+-.-..+|++.|.++ |++|+++++.......... . .+........ ...... ... .......
T Consensus 15 gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~~~---~--~~~~~~~~~~----~~~~~~--~~~-----~~~~~~~ 77 (359)
T cd03823 15 GGAEVVAHDLAEALAKR-GHEVAVLTAGEDPPRQDKE---V--IGVVVYGRPI----DEVLRS--ALP-----RDLFHLS 77 (359)
T ss_pred cchHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccc---c--ccceeecccc----ccccCC--Cch-----hhhhHHH
Confidence 58888899999999999 9999999887543221100 0 1111111100 000000 000 0001111
Q ss_pred HHH-HhcHHHHHHHHhhCCCCcEEEEcCcchhh---HHHHHHhCCCeEEEe
Q 037334 98 RAT-KLMQPHFERALESLPRVSFMVSDGFLWWT---LDSANKFGFPRFVFY 144 (263)
Q Consensus 98 ~~~-~~~~~~l~~~l~~~~~~~~vI~D~~~~~~---~~vA~~lgiP~v~f~ 144 (263)
... ..+...+++++++. ++|+|++.....+. ...+++.++|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 78 DYDNPAVVAEFARLLEDF-RPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred hccCHHHHHHHHHHHHHc-CCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 111 23445667777775 89999888754443 345788899987744
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=90.93 E-value=4.5 Score=35.19 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.|+-.-+..|++.|+++ |++|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~-g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKR-GHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhC-CceEEEEecCCC
Confidence 59999999999999999 999999987643
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=90.89 E-value=4.7 Score=36.67 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
+.+|++.|.++ ||+||++++..
T Consensus 21 ~~~l~~~L~~~-G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAAR-GHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHC-CCeEEEEecCC
Confidence 57999999999 99999999764
No 49
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.50 E-value=3.3 Score=35.98 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-|+.+.+.+|++.|+++ ||+|+++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~-g~~v~~~~~~~ 41 (364)
T cd03814 14 NGVVRTLQRLVEHLRAR-GHEVLVIAPGP 41 (364)
T ss_pred cceehHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 69999999999999999 99999998864
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.75 E-value=5.5 Score=35.16 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.2
Q ss_pred eEEEecCCC-CCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 9 HVVLFPFMS-KGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 9 hvv~vp~p~-~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
+|+++.+|. -|.-.-+.+||+.|+++ ||+|+++++..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecCC
Confidence 455555543 47778899999999999 99999998764
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=88.48 E-value=7 Score=33.49 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=61.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCC
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPS 89 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 89 (263)
|+++.....|+..-+.+|++.|.++ |++|+++++...... . . .. .+++.+.++.. ... .
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~--~-~-~~--~~~~~~~~~~~------~~~------~-- 60 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE--E-L-EA--LGVKVIPIPLD------RRG------I-- 60 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc--c-c-cc--CCceEEecccc------ccc------c--
Confidence 4555555789999999999999999 999999988754432 0 0 01 35666655421 000 0
Q ss_pred ccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch-hhHHH-HHHhCCCeEEEe
Q 037334 90 MSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW-WTLDS-ANKFGFPRFVFY 144 (263)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~-~~~~v-A~~lgiP~v~f~ 144 (263)
.....+. ....+.+++++. ++|.|++..... +...+ ++..+.+.++++
T Consensus 61 -~~~~~~~-----~~~~~~~~~~~~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 61 -NPFKDLK-----ALLRLYRLLRKE-RPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred -ChHhHHH-----HHHHHHHHHHhc-CCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 0111111 112345556664 899988775543 23333 443666655554
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=88.01 E-value=6.4 Score=34.08 Aligned_cols=33 Identities=24% Similarity=0.125 Sum_probs=28.2
Q ss_pred cCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 14 PFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 14 p~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
|....|+-.-..++++.|.++ |++|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~-g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKR-GHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHc-CCeEEEEeCCCC
Confidence 334579999999999999999 999999987643
No 53
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=86.63 E-value=9.7 Score=35.17 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHcCCCc--eEEEEeCCCCch----hhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchh
Q 037334 21 IIPILNLAQLLLRRPRV--TVTVFTTPANRP----FTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYV 94 (263)
Q Consensus 21 i~P~l~Lak~La~~~G~--~VT~~~t~~~~~----~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~ 94 (263)
-.=+.+||++|+.+ || +|+++|...... ...... .....+++++.++.. +..... ..
T Consensus 29 ~~~v~~La~~L~~~-G~~~~V~v~t~~~~~~~~~~~~~~~~-~~~~~gv~v~r~~~~------~~~~~~---------~~ 91 (439)
T TIGR02472 29 TKYVLELARALARR-SEVEQVDLVTRLIKDAKVSPDYAQPI-ERIAPGARIVRLPFG------PRRYLR---------KE 91 (439)
T ss_pred chHHHHHHHHHHhC-CCCcEEEEEeccccCcCCCCccCCCe-eEeCCCcEEEEecCC------CCCCcC---------hh
Confidence 34568999999999 97 999999642211 000000 011156777777631 110000 00
Q ss_pred HHHHHHHhcHHHHHHHHhhC-CCCcEEEEcCc-chhh-HHHHHHhCCCeEEEe
Q 037334 95 PFTRATKLMQPHFERALESL-PRVSFMVSDGF-LWWT-LDSANKFGFPRFVFY 144 (263)
Q Consensus 95 ~~~~~~~~~~~~l~~~l~~~-~~~~~vI~D~~-~~~~-~~vA~~lgiP~v~f~ 144 (263)
.+...+..+...+.+++++. .++|+|-+-.. ..+. ..+++.+|+|+++-.
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 92 LLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 11111122334455555542 26999977653 2333 456677899986543
No 54
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=84.71 E-value=18 Score=36.25 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHH--------HHcCCCc----eEEEEeCCCCchhhh---hhhcc-CCCCCceEEecCCCCCCCCCCCCC
Q 037334 18 KGHIIPILNLAQL--------LLRRPRV----TVTVFTTPANRPFTS---KFLSN-SSTAACCIIDIPYPENVPEIPAGV 81 (263)
Q Consensus 18 ~GHi~P~l~Lak~--------La~~~G~----~VT~~~t~~~~~~~~---~~~~~-~~~~~i~~~~lp~~~~~~~~p~~~ 81 (263)
-|+..=.++|||. |+.+ |+ +|+++|-......-. ..+.. ...++++++.+|+-+ +.+.
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~-----~~~~ 352 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRT-----ENGI 352 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCC-----Cccc
Confidence 4666677888886 5678 99 777988653221100 00000 112578888887531 1110
Q ss_pred CCCCCCCCccchhHHHHHHHhcHHHHHH-HHhhC-CCCcEEEEcCcch-h-hHHHHHHhCCCeE-EEe
Q 037334 82 ESTDKLPSMSLYVPFTRATKLMQPHFER-ALESL-PRVSFMVSDGFLW-W-TLDSANKFGFPRF-VFY 144 (263)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~-~~~~~vI~D~~~~-~-~~~vA~~lgiP~v-~f~ 144 (263)
....-++ -..+...+..+...+.+ +.++. .+||+|++-+..+ + +..+|+++|||.+ +++
T Consensus 353 ~~~~~i~----k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 353 ILRNWIS----RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred ccccccC----HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 0000011 11122223334444443 32232 3799999987664 4 4778899999954 444
No 55
>PLN00142 sucrose synthase
Probab=84.03 E-value=7.1 Score=39.19 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=54.7
Q ss_pred HHHHHHHcCCCceEE----EEeCCCCchhhh---hhhcc-CCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 26 NLAQLLLRRPRVTVT----VFTTPANRPFTS---KFLSN-SSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 26 ~Lak~La~~~G~~VT----~~~t~~~~~~~~---~~~~~-~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
+|+++|+.+ |+.|+ ++|=......-. ..+.. ...++.+++.+|+-+ ..+.-. .-++. +.+.
T Consensus 319 el~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~-----~~~~l~-~~i~k----e~l~ 387 (815)
T PLN00142 319 EMLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRT-----EKGILR-KWISR----FDVW 387 (815)
T ss_pred HHHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCC-----Cccccc-cccCH----HHHH
Confidence 466888888 99775 665432111100 00000 111467888777521 111100 00110 1122
Q ss_pred HHHHhcHHHHHHHH-hhC-CCCcEEEEcCcch-hh-HHHHHHhCCCeEEEe
Q 037334 98 RATKLMQPHFERAL-ESL-PRVSFMVSDGFLW-WT-LDSANKFGFPRFVFY 144 (263)
Q Consensus 98 ~~~~~~~~~l~~~l-~~~-~~~~~vI~D~~~~-~~-~~vA~~lgiP~v~f~ 144 (263)
..+..+...+.+.+ ++. .+||+|.+-+..+ ++ ..+|+++|||.+.-.
T Consensus 388 p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 388 PYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 22233443344333 333 3699999998765 54 778999999987533
No 56
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=82.44 E-value=10 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCeEEEecCCC---------------CCChHHHHHHHHHHHcCCC--ceEEEEeCCCC
Q 037334 6 SDHHVVLFPFMS---------------KGHIIPILNLAQLLLRRPR--VTVTVFTTPAN 47 (263)
Q Consensus 6 ~~~hvv~vp~p~---------------~GHi~P~l~Lak~La~~~G--~~VT~~~t~~~ 47 (263)
++..|+++..-| -|+..=.++||+.|+++ | ++|+++|-...
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~-~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSM-PGVYRVDLLTRQVS 225 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhC-CCCCEEEEEeCCcC
Confidence 456777775422 24566678999999999 7 79999987543
No 57
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=81.84 E-value=19 Score=32.48 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
-|--.-..+||+.|+.+ ||+|+++++......-.. ....+++++.+|.. ..... .. ...+.
T Consensus 14 GG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~----~~~~~i~v~~~p~~----~~~~~----~~------~~~~~ 74 (398)
T cd03796 14 GGVETHIYQLSQCLIKR-GHKVVVITHAYGNRVGIR----YLTNGLKVYYLPFV----VFYNQ----ST------LPTFF 74 (398)
T ss_pred ccHHHHHHHHHHHHHHc-CCeeEEEeccCCcCCCcc----cccCceeEEEecce----eccCC----cc------ccchh
Confidence 35556789999999999 999999997532111000 00135677766632 11110 00 00111
Q ss_pred HHHHhcHHHHHHHHhhCCCCcEEEEcC-cchh---hHHHHHHhCCCeEEE
Q 037334 98 RATKLMQPHFERALESLPRVSFMVSDG-FLWW---TLDSANKFGFPRFVF 143 (263)
Q Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~vI~D~-~~~~---~~~vA~~lgiP~v~f 143 (263)
. ....+++.+.+. ++|.|-+-. ...+ +...++.+|+|.+..
T Consensus 75 ~----~~~~l~~~~~~~-~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 75 G----TFPLLRNILIRE-RITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred h----hHHHHHHHHHhc-CCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 1 123455566564 899885543 3222 345678889998753
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=81.75 E-value=26 Score=31.55 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHH
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPF 96 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~ 96 (263)
.-|.-.=..+||+.|+++ ||+||++++......-.. . ....++++..++... ... . . ...+
T Consensus 19 ~GG~e~~v~~la~~L~~~-G~~V~v~~~~~~~~~~~~-~--~~~~~~~v~~~~~~~----~~~----~---~----~~~~ 79 (405)
T TIGR03449 19 AGGMNVYILETATELARR-GIEVDIFTRATRPSQPPV-V--EVAPGVRVRNVVAGP----YEG----L---D----KEDL 79 (405)
T ss_pred CCCceehHHHHHHHHhhC-CCEEEEEecccCCCCCCc-c--ccCCCcEEEEecCCC----ccc----C---C----HHHH
Confidence 457778899999999999 999999997643211000 0 011467776654210 100 0 0 0011
Q ss_pred HHHHH-hcHHHHHHHHhhC-CCCcEEEEcCc-chh-hHHHHHHhCCCeEEEec
Q 037334 97 TRATK-LMQPHFERALESL-PRVSFMVSDGF-LWW-TLDSANKFGFPRFVFYG 145 (263)
Q Consensus 97 ~~~~~-~~~~~l~~~l~~~-~~~~~vI~D~~-~~~-~~~vA~~lgiP~v~f~~ 145 (263)
..... .....++.++... .++|.|-+-.+ ..| +..+++.+++|.++-+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 80 PTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 11111 1122343444432 36898865543 233 34556778999876443
No 59
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=80.64 E-value=21 Score=31.07 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
-|--.-..+||+.|+.+ ||+|++++....... ... . .+++.+.++.. .. ..+..+.
T Consensus 10 gG~e~~~~~l~~~L~~~-g~~v~v~~~~~~~~~---~~~-~--~~~~~~~~~~~------~~-----------~~~~~~~ 65 (355)
T cd03819 10 GGVERGTLELARALVER-GHRSLVASAGGRLVA---ELE-A--EGSRHIKLPFI------SK-----------NPLRILL 65 (355)
T ss_pred CcHHHHHHHHHHHHHHc-CCEEEEEcCCCchHH---HHH-h--cCCeEEEcccc------cc-----------chhhhHH
Confidence 45566778999999999 999999987532211 110 1 35666555421 00 0010111
Q ss_pred HHHHhcHHHHHHHHhhCCCCcEEEEcCc-chhhH-HHHHHhCCCeEEEeccc
Q 037334 98 RATKLMQPHFERALESLPRVSFMVSDGF-LWWTL-DSANKFGFPRFVFYGMN 147 (263)
Q Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~vI~D~~-~~~~~-~vA~~lgiP~v~f~~~~ 147 (263)
. ...+.+.+++. ++|+|++... ..|.. ..++.+++|.+..+...
T Consensus 66 -~----~~~l~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 111 (355)
T cd03819 66 -N----VARLRRLIREE-KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGF 111 (355)
T ss_pred -H----HHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12245555664 8999988653 34553 34567799988655543
No 60
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=80.04 E-value=38 Score=30.08 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=24.4
Q ss_pred EecCCCCC-ChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 12 LFPFMSKG-HIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 12 ~vp~p~~G-Hi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
+.|....| =-.-+.+||+.|+++ ||+||++++..
T Consensus 6 ~~~~~~~gG~e~~~~~la~~L~~~-G~~V~v~~~~~ 40 (392)
T cd03805 6 IHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHH 40 (392)
T ss_pred ECCCCCCchHHHHHHHHHHHHHhC-CCeEEEEcCCC
Confidence 33443333 334558999999999 99999998753
No 61
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.79 E-value=2.4 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 15 FMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 15 ~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
--|.||+.=++.||+.|.++ |+.++|++...+.
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e 44 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKR-GFACLFLTKQDIE 44 (318)
T ss_pred ccCcchhhhHHHHHHHHHhc-CceEEEecccchh
Confidence 35689999999999999999 9999999987643
No 62
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.04 E-value=42 Score=29.17 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPY 70 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~ 70 (263)
-|=-.=..+|++.|.++ ||+|++++.......... .. .+++++.++.
T Consensus 15 gG~~~~~~~la~~L~~~-g~~v~v~~~~~~~~~~~~---~~--~~i~~~~~~~ 61 (363)
T cd04955 15 GGFETFVEELAPRLVAR-GHEVTVYCRSPYPKQKET---EY--NGVRLIHIPA 61 (363)
T ss_pred CcHHHHHHHHHHHHHhc-CCCEEEEEccCCCCCccc---cc--CCceEEEcCC
Confidence 34456677999999999 999999987643211110 11 4677777653
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=75.60 E-value=52 Score=29.49 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHH
Q 037334 19 GHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTR 98 (263)
Q Consensus 19 GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 98 (263)
-|+.=+-.+.++|-.+ ||+|.+.+-... .....++. -++.+..+.- .+ . .....+..
T Consensus 11 ~hvhfFk~~I~eL~~~-GheV~it~R~~~--~~~~LL~~---yg~~y~~iG~--------~g----~-----~~~~Kl~~ 67 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKR-GHEVLITARDKD--ETEELLDL---YGIDYIVIGK--------HG----D-----SLYGKLLE 67 (335)
T ss_pred hHHHHHHHHHHHHHhC-CCEEEEEEeccc--hHHHHHHH---cCCCeEEEcC--------CC----C-----CHHHHHHH
Confidence 3888889999999999 999877765432 21111211 2566665531 11 0 11222332
Q ss_pred HHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccHHH
Q 037334 99 ATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYA 150 (263)
Q Consensus 99 ~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~ 150 (263)
..... -.+-+++++. +||++|+= ...-+..+|.-+|+|.+.|.=..-+.
T Consensus 68 ~~~R~-~~l~~~~~~~-~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 68 SIERQ-YKLLKLIKKF-KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHHHH-HHHHHHHHhh-CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhh
Confidence 22222 3344444554 89999962 23456779999999999998875433
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=74.79 E-value=35 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=25.4
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
.-|...-+++|++.|.++ |++|++++.....
T Consensus 12 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~ 42 (348)
T cd03820 12 AGGAERVLSNLANALAEK-GHEVTIISLDKGE 42 (348)
T ss_pred CCChHHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 356667788999999999 9999999887543
No 65
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=74.39 E-value=8.8 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=41.0
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK 53 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~ 53 (263)
++.+||+...++-+|-.-..-++..|.++ |++|+++......+.+..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHH
Confidence 56799999999999999999999999999 999999988766555543
No 66
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=71.66 E-value=6.4 Score=35.39 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCCeEEEecCCC-CCChHHHHHHHHHHHcCCCceEEEEeC
Q 037334 6 SDHHVVLFPFMS-KGHIIPILNLAQLLLRRPRVTVTVFTT 44 (263)
Q Consensus 6 ~~~hvv~vp~p~-~GHi~P~l~Lak~La~~~G~~VT~~~t 44 (263)
+.++|+++.... .||..+...|+..|..+ |++|+++..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~-g~~~~~~~d 41 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK-GIKDVIVCD 41 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc-CCCcEEEEE
Confidence 445777777654 59999999999999999 998666644
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=71.29 E-value=66 Score=27.60 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 19 GHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 19 GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
|--.-..+|++.|.++ ||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~-g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVAR-GHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhc-CceEEEEecCC
Confidence 5557789999999999 99999998764
No 68
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=71.20 E-value=4.7 Score=31.06 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-|=-.-+.+|++.|+++ ||+||+++...
T Consensus 12 GG~e~~~~~l~~~l~~~-G~~v~v~~~~~ 39 (177)
T PF13439_consen 12 GGAERVVLNLARALAKR-GHEVTVVSPGV 39 (177)
T ss_dssp SHHHHHHHHHHHHHHHT-T-EEEEEESS-
T ss_pred ChHHHHHHHHHHHHHHC-CCEEEEEEcCC
Confidence 35667789999999999 99999997764
No 69
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=70.46 E-value=9.2 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=35.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
+|++...++-.|-..+.-++..|..+ |++|+++......+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~~~~~~l~ 43 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVDVPPEEIV 43 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCCCCHHHHH
Confidence 47889999999999999999999999 99998887654444443
No 70
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=69.34 E-value=58 Score=26.18 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=21.7
Q ss_pred CCcEEEEcCcchhhHHHHHHh-CCCeEEEe
Q 037334 116 RVSFMVSDGFLWWTLDSANKF-GFPRFVFY 144 (263)
Q Consensus 116 ~~~~vI~D~~~~~~~~vA~~l-giP~v~f~ 144 (263)
.||+||.-.-.+.+.-+-+.+ ++|.+.|.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 689999987666667677777 78877654
No 71
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=68.82 E-value=65 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 16 MSKGHIIPILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 16 p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
..-|.-.-+.++++.|..+ |++||+++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~-~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRS-KIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCcc-ceEEEEEEeCCCC
Confidence 4568888899999999988 9999999986543
No 72
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=67.75 E-value=51 Score=27.20 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.3
Q ss_pred EEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 11 VLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 11 v~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
+++-....|-..-+|+-+++..-+ |-+|.++++...
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD 43 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAID 43 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 344445579999999999999999 999999988754
No 73
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=66.84 E-value=83 Score=28.86 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcC-CCceEEEEeCCCCchh---hhhhhcc---CCCCCceEEecC-CCCCCCCCCCCCCCCCCCCCccch
Q 037334 22 IPILNLAQLLLRR-PRVTVTVFTTPANRPF---TSKFLSN---SSTAACCIIDIP-YPENVPEIPAGVESTDKLPSMSLY 93 (263)
Q Consensus 22 ~P~l~Lak~La~~-~G~~VT~~~t~~~~~~---~~~~~~~---~~~~~i~~~~lp-~~~~~~~~p~~~~~~~~~~~~~~~ 93 (263)
--+.+.++.|.++ .|+.||++|+...+.. +.+..+. ....++.++.+. . ...++.. ..+ . +
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~-----~~~--r-~ 86 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKY---RKLVEAS-----TYP--R-F 86 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecc---eeeeccc-----cCC--c-e
Confidence 3456777887775 3799999999865432 2111111 111345544431 1 0122221 011 1 1
Q ss_pred hHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHh-CCCeEEEec
Q 037334 94 VPFTRATKLMQPHFERALESLPRVSFMVSDGFLWWTLDSANKF-GFPRFVFYG 145 (263)
Q Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~f~~ 145 (263)
..+......+.-.++.+. .. +||++|.+.-.+++..+++.+ ++|.+.+.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~-~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 87 TLLGQALGSMILGLEALL-KL-VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred eeHHHHHHHHHHHHHHHH-hc-CCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 112222223333344433 22 799888887677667777764 678766554
No 74
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=65.04 E-value=54 Score=29.88 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchh-hhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPF-TSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDK 86 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~-~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 86 (263)
.++-+-....|.++-...|+++|.++ ++++|.+.++...... ..+.. . .++..+.+|. +
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~--~--~~~~~~~~P~--------d------- 111 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF--G--DDVEHRYLPY--------D------- 111 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc--C--CCceEEEecC--------C-------
Confidence 45667778889999999999999887 2355443332222222 22111 1 2344444441 0
Q ss_pred CCCccchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcchh--hHHHHHHhCCCeEEEec
Q 037334 87 LPSMSLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLWW--TLDSANKFGFPRFVFYG 145 (263)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 145 (263)
. ...++++++.. +||+++.--.-.| ....+++.|+|.+....
T Consensus 112 -----~-----------~~~~~~~l~~~-~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 112 -----L-----------PGAVRRFLRFW-RPKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred -----c-----------HHHHHHHHHhh-CCCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 0 02355667776 8998875322234 34567889999987643
No 75
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=62.50 E-value=58 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+-.|++.|. . +.+||++.+..+.+-.
T Consensus 16 i~aL~~al~-~-~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 16 IRALARALR-E-GADVTVVAPDREQSGA 41 (252)
T ss_pred HHHHHHHHh-h-CCCEEEEccCCCCccc
Confidence 345777777 7 8999999998776443
No 76
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=61.50 E-value=1e+02 Score=26.11 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHH
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFT 97 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 97 (263)
-|+..-+..|++.|.+. |++|++++............ ...... .. .. .. .......
T Consensus 14 ~G~~~~~~~l~~~L~~~-g~~v~i~~~~~~~~~~~~~~-----~~~~~~--------~~--~~----~~----~~~~~~~ 69 (374)
T cd03801 14 GGAERHVLELARALAAR-GHEVTVLTPGDGGLPDEEEV-----GGIVVV--------RP--PP----LL----RVRRLLL 69 (374)
T ss_pred CcHhHHHHHHHHHHHhc-CceEEEEecCCCCCCceeee-----cCccee--------cC--Cc----cc----ccchhHH
Confidence 68999999999999999 99999998875432111000 000000 00 00 00 0000001
Q ss_pred HHHHhcHHHHHHHHhhCCCCcEEEEcCcchhhH--HHHHHhCCCeEEEeccc
Q 037334 98 RATKLMQPHFERALESLPRVSFMVSDGFLWWTL--DSANKFGFPRFVFYGMN 147 (263)
Q Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~~~~--~vA~~lgiP~v~f~~~~ 147 (263)
.......+..+++.. ++|.|+......+.. ..++..++|.++..-..
T Consensus 70 --~~~~~~~~~~~~~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 118 (374)
T cd03801 70 --LLLLALRLRRLLRRE-RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGL 118 (374)
T ss_pred --HHHHHHHHHHHhhhc-CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccc
Confidence 112233455566664 899988887655433 47788899987665443
No 77
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=46 Score=30.10 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=47.1
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC--chhhhhhhccCCCCCceEEecCC
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN--RPFTSKFLSNSSTAACCIIDIPY 70 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~--~~~~~~~~~~~~~~~i~~~~lp~ 70 (263)
+++.|++++-..-.||--=|--=|.-|+.. |++|+++.-... ++.+. .+ ++|+++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~e~l~----~h--prI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPLEELL----NH--PRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCChHHHh----cC--CceEEEeCCC
Confidence 567899999999999999999999999999 999999875533 22222 13 8999999874
No 78
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=59.96 E-value=95 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-.+|+++|..+ |++|+..+...
T Consensus 12 gr~la~~L~~~-g~~v~~s~~t~ 33 (256)
T TIGR00715 12 SRAIAKGLIAQ-GIEILVTVTTS 33 (256)
T ss_pred HHHHHHHHHhC-CCeEEEEEccC
Confidence 56899999999 99998876654
No 79
>PRK08760 replicative DNA helicase; Provisional
Probab=58.89 E-value=71 Score=30.12 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=34.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
=+++-.-|+.|=..=++++|...+.+.|..|-|++.+-....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 4667788999999999999999875338899999887655443
No 80
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=57.75 E-value=1.2e+02 Score=25.78 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
..|+-.-+..+++.|.+. |++|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~-g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKR-GVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHC-CCceEEEecCCCC
Confidence 478899999999999999 9999999887543
No 81
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=57.65 E-value=18 Score=31.19 Aligned_cols=30 Identities=37% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.-|+..-..+|++.|.++ |++|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKL-GHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 469999999999999999 999999988643
No 82
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=57.29 E-value=19 Score=31.42 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=36.1
Q ss_pred HhcHHHHHHHHhhCCCCcEEEEcCcchh-----hHHHHHHhCCCeEEEecccH
Q 037334 101 KLMQPHFERALESLPRVSFMVSDGFLWW-----TLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~~vI~D~~~~~-----~~~vA~~lgiP~v~f~~~~a 148 (263)
..+++.+++.+++.+++-+||-|.|.-- ..+.|.+.+||+|++--...
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechhc
Confidence 3456777777766568999999998742 36667899999999877554
No 83
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=56.17 E-value=65 Score=27.73 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=26.7
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+++++|++.-==|. |---+..|++.|.+. | +|+++.+....+..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCCCCCCC
Confidence 34566665543221 112356788888888 8 79988887665443
No 84
>PRK05595 replicative DNA helicase; Provisional
Probab=55.77 E-value=82 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=34.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHH-cCCCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLL-RRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La-~~~G~~VT~~~t~~~~~~~~ 52 (263)
=+++-.-|+.|=..=++++|..++ .+ |..|-|++.+-....+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCCCHHHHH
Confidence 356677899999999999999887 56 99999998886555443
No 85
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.69 E-value=29 Score=28.40 Aligned_cols=47 Identities=15% Similarity=-0.040 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK 53 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~ 53 (263)
++.+|++.+.++-.|-....=++..|..+ |++|+++......+.+..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHH
Confidence 35799999999999999999999999999 999998887655555544
No 86
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.43 E-value=30 Score=25.30 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=36.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
++++...+..-|-.-+.-++..|.++ |++|.++-.....+.+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDANVPPEELV 44 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESSB-HHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCCCCHHHHH
Confidence 78999999999999999999999999 99999996655444443
No 87
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.28 E-value=30 Score=28.30 Aligned_cols=48 Identities=13% Similarity=-0.146 Sum_probs=41.2
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhh
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKF 54 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~ 54 (263)
++.+|++.+.++-.|-....=++..|..+ |++|+++......+.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCCCHHHHHHH
Confidence 45799999999999999999999999999 9999999887666655543
No 88
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=54.19 E-value=24 Score=28.77 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCC
Q 037334 25 LNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPY 70 (263)
Q Consensus 25 l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~ 70 (263)
=+|+.+|+++ |++||+.+.....+.-.. .. .+++.+.+|.
T Consensus 24 e~L~~~l~~~-g~~v~Vyc~~~~~~~~~~---~y--~gv~l~~i~~ 63 (185)
T PF09314_consen 24 EELAPRLVSK-GIDVTVYCRSDYYPYKEF---EY--NGVRLVYIPA 63 (185)
T ss_pred HHHHHHHhcC-CceEEEEEccCCCCCCCc---cc--CCeEEEEeCC
Confidence 4589999999 999999987654432111 12 4688888864
No 89
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.86 E-value=68 Score=29.72 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=34.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
+++=-=||.|--+=+||+|.+|+++ | +|-|++.+....+++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHH
Confidence 4444559999999999999999999 8 999999998776654
No 90
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.52 E-value=1.4e+02 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=23.8
Q ss_pred CCcE-EEEcCcch-hhHHHHHHhCCCeEEEeccc
Q 037334 116 RVSF-MVSDGFLW-WTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 116 ~~~~-vI~D~~~~-~~~~vA~~lgiP~v~f~~~~ 147 (263)
-||+ +|.|.-.- -|..-|+++|||++.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 3886 47887653 56778999999999765544
No 91
>PRK07773 replicative DNA helicase; Validated
Probab=53.48 E-value=1e+02 Score=31.56 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=35.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
=+++-.-|+.|=..=.+++|...+.++|..|.|++.+-...++.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 36677789999999999999998854388999999886655543
No 92
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=53.43 E-value=1.4e+02 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=21.0
Q ss_pred CCcEEEE----------cCcchhhHHH---HHHhCCCeEEEec
Q 037334 116 RVSFMVS----------DGFLWWTLDS---ANKFGFPRFVFYG 145 (263)
Q Consensus 116 ~~~~vI~----------D~~~~~~~~v---A~~lgiP~v~f~~ 145 (263)
+||+||+ |.+.+.+... |.-+|||.+.|+.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 7899998 4444444444 4457999999985
No 93
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=53.02 E-value=75 Score=27.70 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCch---hhhhh-hccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHHH
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRP---FTSKF-LSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRA 99 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~---~~~~~-~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 99 (263)
-+.|++.|+.+ |++|+.+..+.... .+... .......+.+.+-+|.| +..++.. +.. .+.
T Consensus 13 ~~~~~~~l~~~-g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~~----i~~-----~~~-- 76 (287)
T TIGR02853 13 QLELIRKLEEL-DAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVP----GTSHDGK----VAT-----VFS-- 76 (287)
T ss_pred HHHHHHHHHHC-CCEEEEEeccccccccccceeecchhhhhccCCEEEECCc----cccCCce----Eec-----ccc--
Confidence 36799999999 99999998762211 11110 00111134556666654 2222110 000 000
Q ss_pred HHhcHHHH-HHHHhhCCCCcEEEEcCcchhhHH-HHHHhCCCeE
Q 037334 100 TKLMQPHF-ERALESLPRVSFMVSDGFLWWTLD-SANKFGFPRF 141 (263)
Q Consensus 100 ~~~~~~~l-~~~l~~~~~~~~vI~D~~~~~~~~-vA~~lgiP~v 141 (263)
...-.+ +++++.+ +..|++.--.-..-.+ .|++.||+++
T Consensus 77 --~~~~~l~~~~l~~~-~~~~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 77 --NEKVVLTPELLEST-KGHCTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred --cCCccccHHHHHhc-CCCCEEEEecCCHHHHHHHHHCCCeEE
Confidence 111112 3456665 5666655544444444 8889999988
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=52.83 E-value=1.9e+02 Score=26.84 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=67.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEe-CCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFT-TPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDK 86 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~-t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 86 (263)
-.|-+-..+.|=.+-.+.|.++|..+ ++.+|++-| |+.-.+.+++.. . ..+....+|+.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~--~--~~v~h~YlP~D--------------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF--G--DSVIHQYLPLD--------------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc--C--CCeEEEecCcC---------------
Confidence 47777788899999999999999987 577887776 444444444322 1 23555556531
Q ss_pred CCCccchhHHHHHHHhcHHHHHHHHhhCCCCc-EEEEcCcc-hhhHHHHHHhCCCeEEEec
Q 037334 87 LPSMSLYVPFTRATKLMQPHFERALESLPRVS-FMVSDGFL-WWTLDSANKFGFPRFVFYG 145 (263)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~vI~D~~~-~~~~~vA~~lgiP~v~f~~ 145 (263)
....++++++.. +|+ |||.+.=+ +-...-+++.|+|.+....
T Consensus 111 ----------------~~~~v~rFl~~~-~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 111 ----------------LPIAVRRFLRKW-RPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ----------------chHHHHHHHHhc-CCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 012356667666 777 56666533 3346778899999998776
No 95
>PRK06321 replicative DNA helicase; Provisional
Probab=52.67 E-value=1.1e+02 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=33.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
=+++-.-|+.|=..=++++|+..+.+.|..|-|++.+-....+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 4566778999999999999999984338999999887554443
No 96
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.61 E-value=19 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCC
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTP 45 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~ 45 (263)
.-|+.....+|++.|.++ ||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVAK-GHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhcccC-CceEEEEEEe
Confidence 368899999999999999 9999999754
No 97
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.42 E-value=24 Score=28.01 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEe
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFT 43 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~ 43 (263)
.-||-.....|++.|.++ |++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~-g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARR-GHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHc-CCeEEEEE
Confidence 669999999999999999 99999998
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.21 E-value=43 Score=27.87 Aligned_cols=47 Identities=15% Similarity=-0.020 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK 53 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~ 53 (263)
++.+|++...++-.|-+...=++..|..+ |++|+++......+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHH
Confidence 46799999999999999999999999999 999999988766555544
No 99
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.39 E-value=34 Score=29.65 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 17 SKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 17 ~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.-|.-.-..+|++.|..+ |++|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAAR-GIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhC-CCceEEEecCCC
Confidence 558888899999999999 999999998754
No 100
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=46.80 E-value=32 Score=29.92 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred eEEEecCC-C-CCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 9 HVVLFPFM-S-KGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 9 hvv~vp~p-~-~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
+|+++... + -|+-.-...+++.|.++ ||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~-G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAA-GVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhc-CCceeEEEeecc
Confidence 45555443 3 68899999999999999 999999987643
No 101
>PRK05636 replicative DNA helicase; Provisional
Probab=46.60 E-value=76 Score=30.21 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=33.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
=+++-.-|+.|=..=++++|+..+.++|..|.|++.+-....+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 4577788999999999999998874338889898887554443
No 102
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=45.11 E-value=84 Score=28.30 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=23.0
Q ss_pred CCCcEEE-EcC--cchhhHHHHHHh--CCCeEEEecccH
Q 037334 115 PRVSFMV-SDG--FLWWTLDSANKF--GFPRFVFYGMNN 148 (263)
Q Consensus 115 ~~~~~vI-~D~--~~~~~~~vA~~l--giP~v~f~~~~a 148 (263)
.+|||+| .|+ |..+...-+++. |||.+.|.+-..
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pqv 113 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQV 113 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 4888764 576 344456667778 799887766554
No 103
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.08 E-value=47 Score=24.74 Aligned_cols=43 Identities=12% Similarity=-0.073 Sum_probs=36.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
|||+...++-.|-.-..-++..|..+ |++|+++......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHH
Confidence 58899999999999999999999999 99999998875554443
No 104
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=44.70 E-value=2e+02 Score=24.66 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+..|++.|.+ +++|+++.+....+..
T Consensus 16 i~aL~~~l~~--~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 16 IIILAEYLSE--KHEVFVVAPDKERSAT 41 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCCccc
Confidence 5567788864 5699999888765443
No 105
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.09 E-value=26 Score=29.97 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK 53 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~ 53 (263)
..-++++--||.|=..=...++.+|..+ |++|+|++++.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHH
Confidence 3468888899999888899999999988 999999999877666554
No 106
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=44.04 E-value=1.9e+02 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+..|++.|.+. | +|+++.+....+-.
T Consensus 16 i~aL~~~l~~~-~-~V~VvAP~~~qSg~ 41 (250)
T PRK00346 16 IRALAEALREL-A-DVTVVAPDRERSGA 41 (250)
T ss_pred HHHHHHHHHhC-C-CEEEEeCCCCCcCC
Confidence 56788888876 4 89999887665433
No 107
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=43.51 E-value=91 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=30.2
Q ss_pred HhcHHHHHHHHhhCCCCcEEEEcCcchh-h-HHH---HHHh-CCCeEEEeccc
Q 037334 101 KLMQPHFERALESLPRVSFMVSDGFLWW-T-LDS---ANKF-GFPRFVFYGMN 147 (263)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~~vI~D~~~~~-~-~~v---A~~l-giP~v~f~~~~ 147 (263)
..+...+.+++++. +||+||+-..+.. + ... ...+ ++|.+++.|=.
T Consensus 75 ~~~~~~l~~~l~~~-~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 75 RLFARRLIRLLREF-QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHHHHhhc-CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 34556788888886 9999999986632 2 222 2224 57877777654
No 108
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=43.13 E-value=46 Score=28.16 Aligned_cols=31 Identities=29% Similarity=0.212 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 16 MSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 16 p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
+.-|+..-+.+|++.|.+. |++|++++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~-g~~v~v~~~~~~ 40 (353)
T cd03811 10 GGGGAERVLLNLANGLDKR-GYDVTLVVLRDE 40 (353)
T ss_pred cCCCcchhHHHHHHHHHhc-CceEEEEEcCCC
Confidence 3678889999999999999 999999988653
No 109
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=43.01 E-value=1.8e+02 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPF 50 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~ 50 (263)
+..|++.|.+ +++|+++.+..+.+.
T Consensus 16 l~aL~~~l~~--~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 16 INTLAELLSK--YHEVIIVAPENQRSA 40 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCCcc
Confidence 6678888864 569999988766543
No 110
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.60 E-value=91 Score=26.68 Aligned_cols=43 Identities=7% Similarity=-0.096 Sum_probs=31.8
Q ss_pred HHHHHhhCCCCcEEEEcCcch--hhHHHHHHhCCCeEEEecccHHH
Q 037334 107 FERALESLPRVSFMVSDGFLW--WTLDSANKFGFPRFVFYGMNNYA 150 (263)
Q Consensus 107 l~~~l~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~ 150 (263)
+.+.+++ .++.||+++.... .+..+|++.|++.+.+-+.+...
T Consensus 209 l~~~ik~-~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y 253 (266)
T cd01018 209 LIDLAKE-KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADW 253 (266)
T ss_pred HHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHH
Confidence 3344455 3899999997764 46789999999998887766433
No 111
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=41.38 E-value=85 Score=30.58 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCCcEEEE-cC--cchhhHHHHHHhCC--CeEEEecccH
Q 037334 115 PRVSFMVS-DG--FLWWTLDSANKFGF--PRFVFYGMNN 148 (263)
Q Consensus 115 ~~~~~vI~-D~--~~~~~~~vA~~lgi--P~v~f~~~~a 148 (263)
.+|||+|. |+ |......-+++.|+ |.+.|.+-+.
T Consensus 309 ~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqV 347 (608)
T PRK01021 309 TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSI 347 (608)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 48998755 86 33446677888996 8776665554
No 112
>PRK09165 replicative DNA helicase; Provisional
Probab=41.36 E-value=2.4e+02 Score=26.78 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=33.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcC--------------CCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRR--------------PRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~--------------~G~~VT~~~t~~~~~~~~ 52 (263)
=+++..-|+.|=..=++++|...+.+ .|..|.|++.+-....+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 36677789999999999999888742 168899998886655543
No 113
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.05 E-value=1.4e+02 Score=24.33 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCC---CCchhhhhhhccC-CCCCceEEecC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTP---ANRPFTSKFLSNS-STAACCIIDIP 69 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~---~~~~~~~~~~~~~-~~~~i~~~~lp 69 (263)
.|+++..++.-|--=+.+.+++|++. |++|.++.-. .|.+.++...+.- ...+-+++.+|
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~ 173 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVP 173 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeC
Confidence 38888888888877788999999999 9999998654 3555555543321 11346777776
No 114
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.24 E-value=49 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEecccH
Q 037334 104 QPHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 104 ~~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 148 (263)
...++++.+ .++++||-+.. +...|+++|+|++.+.++--
T Consensus 115 ~~~i~~~~~--~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 115 EAAIKQAKA--EGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHH--TT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred HHHHHHHHH--cCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 344444433 47999999974 58999999999988777443
No 115
>PRK11519 tyrosine kinase; Provisional
Probab=40.06 E-value=2.1e+02 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCCeEEEecC--CCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 6 SDHHVVLFPF--MSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 6 ~~~hvv~vp~--p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
++.+++++.. |+.|=..-...||..|+.. |.+|-++-....
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dlr 566 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDMR 566 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence 3456777665 7889999999999999999 999999977643
No 116
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=40.03 E-value=2.3e+02 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=27.6
Q ss_pred cCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 14 PFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 14 p~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.+..-|+-..+.+|++.|... |+.|.+++....
T Consensus 8 ~~~~gG~~~~~~~l~~~l~~~-~~~v~~~~~~~~ 40 (365)
T cd03807 8 GLDVGGAERMLVRLLKGLDRD-RFEHVVISLTDR 40 (365)
T ss_pred eccCccHHHHHHHHHHHhhhc-cceEEEEecCcc
Confidence 344478999999999999999 999999987643
No 117
>PLN02846 digalactosyldiacylglycerol synthase
Probab=40.03 E-value=48 Score=31.16 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCC----CChHHHHHHHHHHHcCCC-ceEEEEeCCC
Q 037334 5 SSDHHVVLFPFMSK----GHIIPILNLAQLLLRRPR-VTVTVFTTPA 46 (263)
Q Consensus 5 ~~~~hvv~vp~p~~----GHi~P~l~Lak~La~~~G-~~VT~~~t~~ 46 (263)
++++||.++.-... |=.+-.+.++..|+++ | |+||++.+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~-G~heV~vvaP~~ 47 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD-GDREVTLVIPWL 47 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc-CCcEEEEEecCC
Confidence 35689999875432 5546677888899999 9 7999998753
No 118
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.60 E-value=53 Score=30.30 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=22.6
Q ss_pred HHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEe
Q 037334 107 FERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFY 144 (263)
Q Consensus 107 l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~ 144 (263)
+++++++. +||++|.+. +...+|+++|+|.+.+.
T Consensus 362 ~~~~i~~~-~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 362 VGDMIART-EPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHhh-CCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 44444443 778887776 45567888888887553
No 119
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=39.31 E-value=61 Score=24.33 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=28.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPF 50 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~ 50 (263)
||++.-..+.+=.. ..++.++|.++ |++|+++.|+.-.+.
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPSAERF 41 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHHHHHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCcHHHH
Confidence 55555555544444 99999999999 999999999854433
No 120
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.47 E-value=62 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=35.9
Q ss_pred CCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 6 SDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 6 ~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.+++|++.+...-||=.-.=-+++.|++. |++|........
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~t 51 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQT 51 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcCC
Confidence 57899999999999999999999999999 999887765543
No 121
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.65 E-value=36 Score=28.62 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 19 GHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 19 GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-|+..|-++|..|.++ |++|+++....
T Consensus 46 l~~saMRhfa~~L~~~-G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAK-GFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHT-T--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 3678999999999999 99999999874
No 122
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=36.40 E-value=2.1 Score=40.15 Aligned_cols=42 Identities=19% Similarity=-0.024 Sum_probs=23.0
Q ss_pred CCcE--EEEcCcchhhHHHHHHhCCCeEEEecccHHHHHHHHHHh
Q 037334 116 RVSF--MVSDGFLWWTLDSANKFGFPRFVFYGMNNYAMSVSRSVG 158 (263)
Q Consensus 116 ~~~~--vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 158 (263)
...| ++.|....+....++--.+..-.|++++ ..++-++.++
T Consensus 99 ~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~-~~la~~l~iP 142 (500)
T PF00201_consen 99 SKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCG-LALAHYLGIP 142 (500)
T ss_dssp ---E--EEEETTSTTHHHHHHHCT-EEEEEESSH-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHhhccccceEeeccchh-HHHHHHhcCC
Confidence 4455 7777776666665555566677777643 3445555444
No 123
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=36.33 E-value=1.4e+02 Score=23.23 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCC
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPA 79 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~ 79 (263)
.+..+|++|.....+|+.=.+++.+.+... +.+++.+..-.-....+....... +++.++...+ ..+|.
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~--~n~evr~Fn~----s~YP~ 126 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNF--CNVEVRKFNF----SKYPK 126 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcC--CceEEEECCC----ccCcH
Confidence 346799999999999999999999999887 457777776654444444322112 5777777664 34554
No 124
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=36.11 E-value=96 Score=27.54 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchh
Q 037334 15 FMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYV 94 (263)
Q Consensus 15 ~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~ 94 (263)
....-|+.=+..+.++|.++.++++.++.|...........+.. +|. ..+. +..+ ..+ . ..
T Consensus 7 ~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~---~i~-~~~~-------~~~~--~~~--~--~~-- 67 (365)
T TIGR00236 7 LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF---HLP-PDYD-------LNIM--SPG--Q--TL-- 67 (365)
T ss_pred EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc---CCC-CCee-------eecC--CCC--C--CH--
Confidence 34455666677788888775467777777764432222111000 111 0000 0101 000 0 11
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCcEEEE--cCcch-hhHHHHHHhCCCeEEE
Q 037334 95 PFTRATKLMQPHFERALESLPRVSFMVS--DGFLW-WTLDSANKFGFPRFVF 143 (263)
Q Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~vI~--D~~~~-~~~~vA~~lgiP~v~f 143 (263)
......+...+.+++++. +||+|++ |.... ++..+|+.+|||.+..
T Consensus 68 --~~~~~~~~~~l~~~l~~~-~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 68 --GEITSNMLEGLEELLLEE-KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred --HHHHHHHHHHHHHHHHHc-CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 111223336677778886 8998876 55544 4577788999999865
No 125
>PLN02275 transferase, transferring glycosyl groups
Probab=34.73 E-value=3.3e+02 Score=24.24 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCc-eEEEEeCCCCchhhhhhhccCCCCCceEEecC
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRV-TVTVFTTPANRPFTSKFLSNSSTAACCIIDIP 69 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~-~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp 69 (263)
+.||+++ +-.|.---|..++++|+.+ |+ +||+++...... .... ....+++++.++
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~-~~~~v~vi~~~~~~~-~~~~---~~~~~v~v~r~~ 62 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQ-ASFQVDVVAYGGSEP-IPAL---LNHPSIHIHLMV 62 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhc-CCceEEEEEecCCCC-CHHH---hcCCcEEEEECC
Confidence 3455555 6688888899999999998 64 799997644211 1111 111468888776
No 126
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=34.68 E-value=68 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCcEEEEcCcchhhHHHHHHhCCCeEEEeccc
Q 037334 116 RVSFMVSDGFLWWTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 116 ~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 147 (263)
.+.+||+|----.+.+-|++.|||.+++..-.
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 57899999866678999999999998876643
No 127
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.61 E-value=57 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 22 IPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 22 ~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
.--+++|..|+.. |.+||++....
T Consensus 9 ~ig~E~A~~l~~~-g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAEL-GKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHHHh-CcEEEEEeccc
Confidence 3458999999999 99999998764
No 128
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=34.40 E-value=56 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhh--HHHHHHhCCCeEEEecccH
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWT--LDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~f~~~~a 148 (263)
+.++++++...++.-+|.|.|++.+ ..+|.++|-.++.+=....
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 4556666544567889999999753 6778889988777655443
No 129
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=33.81 E-value=44 Score=27.19 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCceEEEEeCCC
Q 037334 25 LNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 25 l~Lak~La~~~G~~VT~~~t~~ 46 (263)
..||+.+..+ |++||+++.+.
T Consensus 33 ~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHT-T-EEEEEE-TT
T ss_pred HHHHHHHHHC-CCEEEEEecCc
Confidence 5789999999 99999999874
No 130
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=33.60 E-value=2.8e+02 Score=23.07 Aligned_cols=44 Identities=11% Similarity=-0.140 Sum_probs=36.6
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
.-+++.--|+.|-..=.++++..-+.+ |-.+.|+++......+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVR 65 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHH
Confidence 357778889999999999998887788 99999999987665543
No 131
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=33.42 E-value=2.6e+02 Score=25.02 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCcEE-EEcCcc-hhhHHHHHHhCCCeEEEecccH
Q 037334 116 RVSFM-VSDGFL-WWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 116 ~~~~v-I~D~~~-~~~~~vA~~lgiP~v~f~~~~a 148 (263)
.||+| |.|.-. ..+..=|+++|||.+.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 58865 778765 4678889999999998876554
No 132
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=33.35 E-value=58 Score=24.57 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHhhCCCCcEEEEcCcc--hhhHHHHHHhCCCeEEEeccc
Q 037334 105 PHFERALESLPRVSFMVSDGFL--WWTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 147 (263)
..+++++.. ..|.+||++-+. .+..++|++.|+|.....-.+
T Consensus 72 ~~l~~l~~~-~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 72 ERLEKLFSY-NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp CHHHHHCTT-T-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 566666665 478889999876 378999999999987655433
No 133
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=33.05 E-value=89 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=28.0
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEE
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVF 42 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~ 42 (263)
.-+|++--....|..=+-+||+.|+++ |+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 456666677789999999999999999 9887644
No 134
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.38 E-value=73 Score=29.65 Aligned_cols=27 Identities=19% Similarity=-0.020 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 19 GHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 19 GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
|.-.=.-.|++.|+.+ ||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~~-G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAAL-GHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3334446799999999 99999999753
No 135
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.30 E-value=48 Score=30.54 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTP 45 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~ 45 (263)
-||+.|++.|. +|... ||+|+++...
T Consensus 48 lGhlv~l~kL~-~fQ~a-Gh~~ivLigd 73 (401)
T COG0162 48 LGHLVPLMKLR-RFQDA-GHKPIVLIGD 73 (401)
T ss_pred hhhHHHHHHHH-HHHHC-CCeEEEEecc
Confidence 49999999884 56778 9999999765
No 136
>PRK04328 hypothetical protein; Provisional
Probab=32.08 E-value=3.1e+02 Score=23.11 Aligned_cols=44 Identities=11% Similarity=-0.136 Sum_probs=35.9
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
.-+++.--|+.|-.+=.++++..-+.+ |..+.|+++......+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVR 67 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHH
Confidence 356667779999999999999887888 99999999987665544
No 137
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.39 E-value=82 Score=30.03 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEEe
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVFY 144 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~ 144 (263)
..+++.+++. +||+|+-+. |-..+|+++|||.+..+
T Consensus 364 ~ei~~~I~~~-~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV-EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc-CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3445556664 899999887 56667999999997644
No 138
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=30.94 E-value=2.7e+02 Score=22.12 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=21.6
Q ss_pred ecCCCCCChHHHHHHHHHH-HcCCCceEEEEeCC
Q 037334 13 FPFMSKGHIIPILNLAQLL-LRRPRVTVTVFTTP 45 (263)
Q Consensus 13 vp~p~~GHi~P~l~Lak~L-a~~~G~~VT~~~t~ 45 (263)
+-..+-||..=|+.|.+.+ .++ ....+++.|.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~-~~~~~~ivt~ 35 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDR-YQPRTYIVTE 35 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhc-CCCcEEEEEc
Confidence 3345679999999999999 333 3444454443
No 139
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=30.91 E-value=78 Score=21.64 Aligned_cols=29 Identities=24% Similarity=0.136 Sum_probs=20.9
Q ss_pred CCcEEEEcCcc--hhhHHHHHHhCCCeEEEe
Q 037334 116 RVSFMVSDGFL--WWTLDSANKFGFPRFVFY 144 (263)
Q Consensus 116 ~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~ 144 (263)
++..||++.-- +-+.-+|+++|||.++=.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 67888888643 456778999999998644
No 140
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.83 E-value=87 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCcEEEEcCcc--hhhHHHHHHhCCCeEEEeccc
Q 037334 105 PHFERALESLPRVSFMVSDGFL--WWTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 147 (263)
..+|.+++. +||+||..... .....-..+.|+|.+++....
T Consensus 51 ~~~E~i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 51 PNLEAILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp B-HHHHHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred ccHHHHHhC--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345665553 89999988776 445666677899999999876
No 141
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=30.29 E-value=90 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEE
Q 037334 106 HFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVF 143 (263)
Q Consensus 106 ~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f 143 (263)
.+++.+++. +||+||.+. +...+|+++|||.+..
T Consensus 355 ei~~~i~~~-~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 355 EVADAIAAL-EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHHhc-CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 444455554 789988886 5677899999998755
No 142
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.91 E-value=1e+02 Score=26.27 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhh-------HHHHHHhCCCeEEEe
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWT-------LDSANKFGFPRFVFY 144 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~-------~~vA~~lgiP~v~f~ 144 (263)
+.+++++++. ++++| .|.-.+++ ..+|+++|||.+-|-
T Consensus 56 ~~l~~~l~~~-~i~~v-IDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 56 EGLAEFLREN-GIDAV-IDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHhC-CCcEE-EECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 4455666653 67764 46655554 445778888877654
No 143
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=29.91 E-value=43 Score=30.97 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
.-.|++.|+++ ||+|+++++..
T Consensus 22 ~~~L~~aL~~~-G~~V~Vi~p~y 43 (476)
T cd03791 22 VGALPKALAKL-GHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHC-CCeEEEEecCC
Confidence 45699999999 99999999753
No 144
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.59 E-value=64 Score=21.28 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-|..|..|+++ |++||++=...
T Consensus 8 Gl~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHC-CCcEEEEecCc
Confidence 36778999999 99999996553
No 145
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=29.43 E-value=1.1e+02 Score=25.88 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhh
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSK 53 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~ 53 (263)
..-+++.-.|+.|..+=.+|++...+.+ |..|-++++......+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLE 68 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHH
Confidence 4468888899999999999999999999 999999999987666543
No 146
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=29.27 E-value=1.5e+02 Score=23.99 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCC--cEEEEcCcch-hhHHHHHHhCCCeEEEecccHHHHHHH
Q 037334 105 PHFERALESLPRV--SFMVSDGFLW-WTLDSANKFGFPRFVFYGMNNYAMSVS 154 (263)
Q Consensus 105 ~~l~~~l~~~~~~--~~vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a~~~~~~ 154 (263)
..+++++++. .. .++|=-.+-+ |+.-+|+++|+|.+.+.++-.....+-
T Consensus 47 ~~l~~~i~~~-~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l~ 98 (187)
T PF05728_consen 47 AQLEQLIEEL-KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELLQ 98 (187)
T ss_pred HHHHHHHHhC-CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHHH
Confidence 4456666665 32 3555555544 788899999999999998776544443
No 147
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.20 E-value=1.3e+02 Score=27.06 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=29.1
Q ss_pred HhcHHHHHHHHhhCCCCcEEEEcCcchh----------hHHHHHHhCCCeEEE
Q 037334 101 KLMQPHFERALESLPRVSFMVSDGFLWW----------TLDSANKFGFPRFVF 143 (263)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f 143 (263)
+.....+.+.+++. .+|++|+--.+.. +..|.+++|||.++-
T Consensus 66 eea~~~i~~mv~~~-~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKKL-KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34455666667776 9999999865432 234667899999864
No 148
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.03 E-value=4e+02 Score=23.37 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=55.4
Q ss_pred EecCCC-CCChHHHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCc
Q 037334 12 LFPFMS-KGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSM 90 (263)
Q Consensus 12 ~vp~p~-~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~ 90 (263)
+++... -|--+-++.|++.|..+ |+++++++..... .+..... . .++.++.++.. ..
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~-~~~~~v~~~~~~~-~~~~~~~-~--~~i~~~~~~~~-------~~---------- 64 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPAD-RYRHAVVALTEVS-AFRKRIQ-R--PDVAFYALHKQ-------PG---------- 64 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhcccc-ccceEEEEcCCCC-hhHHHHH-h--cCceEEEeCCC-------CC----------
Confidence 444444 45558899999999998 9999888754322 2221110 1 35676665421 00
Q ss_pred cchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch-hhHHHHHHhCCCeEE
Q 037334 91 SLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW-WTLDSANKFGFPRFV 142 (263)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~-~~~~vA~~lgiP~v~ 142 (263)
..+.. ...+.+++++. ++|+|-+-.... ++.-++...|+|..+
T Consensus 65 ~~~~~--------~~~l~~~l~~~-~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 65 KDVAV--------YPQLYRLLRQL-RPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred CChHH--------HHHHHHHHHHh-CCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 00111 12344556664 899886654332 334456677888633
No 149
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.88 E-value=98 Score=24.47 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCcEEEEcCcchh--hHHHHHHhCCCeEEEec
Q 037334 104 QPHFERALESLPRVSFMVSDGFLWW--TLDSANKFGFPRFVFYG 145 (263)
Q Consensus 104 ~~~l~~~l~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 145 (263)
...+|++++. +||+||......- ..+--++.|||.+.+..
T Consensus 59 ~~n~E~ll~l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 59 SLNVELIVAL--KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCHHHHhcc--CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 3567777764 8999988543322 33445778999987753
No 150
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=28.68 E-value=66 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEecCCCCCChHH-HHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 11 VLFPFMSKGHIIP-ILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 11 v~vp~p~~GHi~P-~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
+++-..|-....- ..+|+++|.++ |++|+++.|+.-.
T Consensus 8 IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~aA~ 45 (196)
T PRK08305 8 IGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYTVQ 45 (196)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHhHH
Confidence 3344455555666 69999999999 9999999988543
No 151
>PTZ00445 p36-lilke protein; Provisional
Probab=28.63 E-value=56 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCChHH-HHHHHHHHHcCCCceEEEEeCCC
Q 037334 18 KGHIIP-ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 18 ~GHi~P-~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-+|..| +..|.++|.+. |+.|+++|-..
T Consensus 73 ~~~~tpefk~~~~~l~~~-~I~v~VVTfSd 101 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNS-NIKISVVTFSD 101 (219)
T ss_pred hccCCHHHHHHHHHHHHC-CCeEEEEEccc
Confidence 357777 88899999999 99999998654
No 152
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.24 E-value=3.3e+02 Score=22.12 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCCcEE-EEcCcc-hhhHHHHHHhCCCeEEEeccc
Q 037334 115 PRVSFM-VSDGFL-WWTLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 115 ~~~~~v-I~D~~~-~~~~~vA~~lgiP~v~f~~~~ 147 (263)
..||+| |.|... ..+..-|.++|||.+.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 468865 667654 367788999999999887655
No 153
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.07 E-value=91 Score=27.75 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCCCCCCCeEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchhh
Q 037334 1 MGSISSDHHVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPFT 51 (263)
Q Consensus 1 m~~~~~~~hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~~ 51 (263)
|+. +..+|+++-.-+.|-+.=...+.+.|.++ ++.+||+++...+...+
T Consensus 1 ~~~--~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 1 MDK--PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CCC--CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 554 44579999999999999999999999887 68999999988766543
No 154
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.98 E-value=1.1e+02 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeEEE
Q 037334 106 HFERALESLPRVSFMVSDGFLWWTLDSANKFGFPRFVF 143 (263)
Q Consensus 106 ~l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f 143 (263)
.+++.+++. +||+||.+. +...+|+++|||.+..
T Consensus 353 el~~~i~~~-~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 353 EVEDAIAEA-APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHHhc-CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 444555554 789988776 4677999999998755
No 155
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=27.85 E-value=1.4e+02 Score=21.67 Aligned_cols=42 Identities=14% Similarity=-0.113 Sum_probs=34.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+++....++-.|.....-++..|.+. |++|.++........+
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDVPPEEI 42 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCCCHHHH
Confidence 35777788899999999999999999 9999999765443333
No 156
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.71 E-value=47 Score=28.10 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
.-.|+|.|+++ |++|+++++..
T Consensus 22 ~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHhc-CCeEEEEEccc
Confidence 45699999999 99999998864
No 157
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=27.53 E-value=42 Score=25.92 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHHcC
Q 037334 16 MSKGHIIPILNLAQLLLRR 34 (263)
Q Consensus 16 p~~GHi~P~l~Lak~La~~ 34 (263)
|-+|-.||+|+|+-.|+=.
T Consensus 57 pe~G~tNPFLHlsmHLsI~ 75 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSIQ 75 (137)
T ss_pred cccCccchhHHHHHHHHHH
Confidence 6689999999999998765
No 158
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.36 E-value=1.4e+02 Score=25.66 Aligned_cols=101 Identities=10% Similarity=0.011 Sum_probs=56.0
Q ss_pred ChHHH----HHHHHHHHcCC-CceEEEEeCCCCc----hhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCc
Q 037334 20 HIIPI----LNLAQLLLRRP-RVTVTVFTTPANR----PFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSM 90 (263)
Q Consensus 20 Hi~P~----l~Lak~La~~~-G~~VT~~~t~~~~----~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~ 90 (263)
=+||+ ++.|-+|..++ |.+||+++..... ..++..++......+. +.. +.+. + .
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avl---i~d----~~~~-g---~------ 95 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIV---VID----DQFE-Q---A------ 95 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEE---Eec----Cccc-C---c------
Confidence 45664 78888998863 3799999876433 2245444321101122 210 1111 1 0
Q ss_pred cchhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcc-----h-hhHHHHHHhCCCeEEEecc
Q 037334 91 SLYVPFTRATKLMQPHFERALESLPRVSFMVSDGFL-----W-WTLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~-----~-~~~~vA~~lgiP~v~f~~~ 146 (263)
+.+ .....|.+.+++. .+|+|++-.-. . -...+|+.||+|.+.+.+.
T Consensus 96 D~~--------~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 96 LPQ--------QTASALAAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CHH--------HHHHHHHHHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 111 1123344455555 79999986433 2 2477999999999988765
No 159
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=27.36 E-value=99 Score=28.00 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCeEEEecC-CCCCChHHHHHHHHHHHcCCC---ceEEEEeC
Q 037334 7 DHHVVLFPF-MSKGHIIPILNLAQLLLRRPR---VTVTVFTT 44 (263)
Q Consensus 7 ~~hvv~vp~-p~~GHi~P~l~Lak~La~~~G---~~VT~~~t 44 (263)
..+|++++. -|.||.--.-.|+..|..+ | .+|.++-.
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~-~~~~~~~~~~D~ 45 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDM-NLDHLSVIEHDL 45 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhh-CCCCceEEEeeh
Confidence 346777765 5679999999999999887 5 45665533
No 160
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.33 E-value=64 Score=24.73 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=27.2
Q ss_pred eEEEecCCCC-CChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 9 HVVLFPFMSK-GHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 9 hvv~vp~p~~-GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-+|++-.|-. --+...+-|+.+|.++ |++||+..++.
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkk-gf~v~VaateA 42 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKK-GFDVTVAATEA 42 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhcc-CccEEEecCHh
Confidence 3455555543 3455678899999999 99999998874
No 161
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=27.26 E-value=1e+02 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=37.6
Q ss_pred CCCCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 5 SSDHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 5 ~~~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.++..+-+.|..|.+.+.|.-++-++|.+. -.++.+++|...
T Consensus 44 ~g~Lql~i~pasGrrkLspt~emi~~l~~g-eIel~VLttqpD 85 (144)
T PF10657_consen 44 YGKLQLTISPASGRRKLSPTPEMIDKLISG-EIELFVLTTQPD 85 (144)
T ss_pred CCceEEEEecCCCccccCCcHHHHHHHhcC-ceEEEEEccCCC
Confidence 356789999999999999999999999998 899999999754
No 162
>PLN02891 IMP cyclohydrolase
Probab=26.70 E-value=2.2e+02 Score=27.36 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHHHH--
Q 037334 23 PILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRAT-- 100 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 100 (263)
=+.+|||.|.+. |++ +++|....+.++. .+|....+.. ..++|+-... ... .+...+...+
T Consensus 34 gi~~fAk~L~~~-gve--IiSTgGTak~L~e-------~Gi~v~~Vsd---~TgfPEiL~G--RVK--TLHPkIhgGILa 96 (547)
T PLN02891 34 DLALLANGLQEL-GYT--IVSTGGTASALEA-------AGVSVTKVEE---LTNFPEMLDG--RVK--TLHPAVHGGILA 96 (547)
T ss_pred CHHHHHHHHHHC-CCE--EEEcchHHHHHHH-------cCCceeeHHh---ccCCchhhCC--ccc--ccCchhhhhhhc
Confidence 378999999999 876 6777766655543 3566665542 2455542211 111 1111121111
Q ss_pred -HhcHHHHHHHHhhC-CCCcEEEEcCc
Q 037334 101 -KLMQPHFERALESL-PRVSFMVSDGF 125 (263)
Q Consensus 101 -~~~~~~l~~~l~~~-~~~~~vI~D~~ 125 (263)
+.....++++-+.- .++|.||+..+
T Consensus 97 ~r~~~~h~~~l~~~~I~~IDlVvVNLY 123 (547)
T PLN02891 97 RRDQEHHMEALNEHGIGTIDVVVVNLY 123 (547)
T ss_pred CCCCHHHHHHHHHcCCCceeeEEEecc
Confidence 23345555544332 57899998865
No 163
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.66 E-value=1.3e+02 Score=21.87 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=27.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCch
Q 037334 15 FMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRP 49 (263)
Q Consensus 15 ~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~ 49 (263)
+...|+-..++++++.+.++ |..|..+|......
T Consensus 60 is~sg~~~~~~~~~~~ak~~-g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKER-GAPVILITSNSESP 93 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHT-TSEEEEEESSTTSH
T ss_pred eeccccchhhhhhhHHHHhc-CCeEEEEeCCCCCc
Confidence 33688999999999999999 99997777765543
No 164
>PRK12342 hypothetical protein; Provisional
Probab=26.65 E-value=1.5e+02 Score=25.51 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=55.3
Q ss_pred ChHHH----HHHHHHHHcCCCceEEEEeCCCCc--hh-h-hhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCcc
Q 037334 20 HIIPI----LNLAQLLLRRPRVTVTVFTTPANR--PF-T-SKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMS 91 (263)
Q Consensus 20 Hi~P~----l~Lak~La~~~G~~VT~~~t~~~~--~~-~-~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~ 91 (263)
=+||+ ++.|-+|..+ |-+||+++..... .. + +..++......+. |.. +.+. + . +
T Consensus 32 ~iNp~D~~AlE~AlrLk~~-g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avl---i~d----~~~~-g---~------D 93 (254)
T PRK12342 32 KISQFDLNAIEAASQLATD-GDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYL---VQD----AQLE-H---A------L 93 (254)
T ss_pred cCChhhHHHHHHHHHHhhc-CCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEE---Eec----CccC-C---C------C
Confidence 35654 7888888866 9999999876543 22 3 3233221101122 210 1111 1 0 1
Q ss_pred chhHHHHHHHhcHHHHHHHHhhCCCCcEEEEcCcch-h-----hHHHHHHhCCCeEEEecc
Q 037334 92 LYVPFTRATKLMQPHFERALESLPRVSFMVSDGFLW-W-----TLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~vI~D~~~~-~-----~~~vA~~lgiP~v~f~~~ 146 (263)
.+ .....|.+.+++. .+|+|++-.-.. . ...+|+.||+|.+.+...
T Consensus 94 ~~--------ata~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 94 PL--------DTAKALAAAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HH--------HHHHHHHHHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 11 1123344455554 799999864332 2 588999999999987755
No 165
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=26.58 E-value=2.5e+02 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCcEEEEcCcch--hhHHHHHHhCCCeEEEecccHH
Q 037334 104 QPHFERALESLPRVSFMVSDGFLW--WTLDSANKFGFPRFVFYGMNNY 149 (263)
Q Consensus 104 ~~~l~~~l~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 149 (263)
...++++++. ..|.+||++-+.. +..++|++.++|.+...-.+..
T Consensus 72 ~~~~~~~~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 72 KQIIHNLLTL-NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 3566666665 3777888887653 6799999999999876655543
No 166
>COG3150 Predicted esterase [General function prediction only]
Probab=26.33 E-value=1e+02 Score=24.92 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhCCCCcEEEEcC-c-chhhHHHHHHhCCCeEEEecccH
Q 037334 103 MQPHFERALESLPRVSFMVSDG-F-LWWTLDSANKFGFPRFVFYGMNN 148 (263)
Q Consensus 103 ~~~~l~~~l~~~~~~~~vI~D~-~-~~~~~~vA~~lgiP~v~f~~~~a 148 (263)
..+.+++++++....+-+|+.. + -.|+.-++..+||+.|+|.+.-.
T Consensus 45 a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Girav~~NPav~ 92 (191)
T COG3150 45 ALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAVR 92 (191)
T ss_pred HHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCChhhhcCCCcC
Confidence 3466777777762233344443 3 35999999999999999998765
No 167
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.89 E-value=1.3e+02 Score=20.62 Aligned_cols=36 Identities=22% Similarity=0.090 Sum_probs=27.5
Q ss_pred CeEEEecCCCC--CChHHHHHHHHHHHcCCCceEEEEeC
Q 037334 8 HHVVLFPFMSK--GHIIPILNLAQLLLRRPRVTVTVFTT 44 (263)
Q Consensus 8 ~hvv~vp~p~~--GHi~P~l~Lak~La~~~G~~VT~~~t 44 (263)
-+|+++|.... .+..-.++++..|.+. |++|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 36888887643 4667788899999998 999987543
No 168
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=25.78 E-value=3e+02 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 23 PILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
-+..||+.|.+. |+++ +.|....+.++
T Consensus 12 ~l~~lAk~L~~l-Gf~I--~AT~GTAk~L~ 38 (187)
T cd01421 12 GLVEFAKELVEL-GVEI--LSTGGTAKFLK 38 (187)
T ss_pred cHHHHHHHHHHC-CCEE--EEccHHHHHHH
Confidence 367899999999 9986 56665555544
No 169
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=25.71 E-value=9.7 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.4
Q ss_pred cCCCCCChHHHHHHHHHHH
Q 037334 14 PFMSKGHIIPILNLAQLLL 32 (263)
Q Consensus 14 p~p~~GHi~P~l~Lak~La 32 (263)
.||+||-.||-+++---|-
T Consensus 17 TFPGqGP~NPKir~Pyplp 35 (39)
T PF08026_consen 17 TFPGQGPFNPKIRWPYPLP 35 (39)
T ss_pred cCCCCCCCCccccccccCC
Confidence 5789999998776644443
No 170
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.58 E-value=1.7e+02 Score=20.68 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCcEE--EEcCcch---h-hHHHHHHhCCCeEEEecccHHHH
Q 037334 116 RVSFM--VSDGFLW---W-TLDSANKFGFPRFVFYGMNNYAM 151 (263)
Q Consensus 116 ~~~~v--I~D~~~~---~-~~~vA~~lgiP~v~f~~~~a~~~ 151 (263)
+.|+| ++|+.-. | +...|++.|+|.+.....+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 45765 6777643 3 47789999999998887776544
No 171
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=25.31 E-value=94 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=24.4
Q ss_pred HHHHHhhCCCCcEEEEcCcchhhHHHHHHhCCCeE
Q 037334 107 FERALESLPRVSFMVSDGFLWWTLDSANKFGFPRF 141 (263)
Q Consensus 107 l~~~l~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v 141 (263)
+++.+++. ++|++|.. .+...+|+++|||.+
T Consensus 385 ~~~~i~~~-~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 385 LYKMLKEA-KADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHhhc-CCCEEEec---CchhhhhhhcCCCEE
Confidence 44445554 89999997 567889999999987
No 172
>PRK04940 hypothetical protein; Provisional
Probab=25.27 E-value=2.4e+02 Score=22.92 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=25.8
Q ss_pred CcEEEEcCcc-hhhHHHHHHhCCCeEEEecccHHH
Q 037334 117 VSFMVSDGFL-WWTLDSANKFGFPRFVFYGMNNYA 150 (263)
Q Consensus 117 ~~~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~a~~ 150 (263)
..+||=-.+- .||.-+|.++|+|.|.+.+.---.
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChH
Confidence 4455544444 499999999999999999987543
No 173
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.64 E-value=2.4e+02 Score=24.61 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhh-------HHHHHHhCCCeEEEecccHHHHHHHHH
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWT-------LDSANKFGFPRFVFYGMNNYAMSVSRS 156 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~-------~~vA~~lgiP~v~f~~~~a~~~~~~~~ 156 (263)
..+...+++. .--++|+|.-++.. ..-|++.||+++.+-..+|...++..+
T Consensus 68 ~~li~~l~~g-~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 68 PKLIPLLKKG-KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred HHHHHHHhcC-CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 4455555552 56789999987642 345788999999999999988777654
No 174
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.53 E-value=1.3e+02 Score=25.41 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHcccccEEEEcchhhhhHHHHHHHhhcC----CCceEEeCc
Q 037334 209 IVSTSNSYGMIVNSFYELEPLFADHCNLVG----KPKSWCVGP 247 (263)
Q Consensus 209 ~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~----~~~v~~VGP 247 (263)
...+.+.|||++-|=..-+. ..+++++.. ..++++||+
T Consensus 50 l~~l~~~d~iifTS~naV~~-~~~~l~~~~~~~~~~~~~aVG~ 91 (255)
T PRK05752 50 LLELDRYCAVIVVSKPAARL-GLELLDRYWPQPPQQPWFSVGA 91 (255)
T ss_pred HhcCCCCCEEEEECHHHHHH-HHHHHHhhCCCCcCCEEEEECH
Confidence 35577899999999888776 555554321 357999998
No 175
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.26 E-value=91 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCCCch
Q 037334 22 IPILNLAQLLLRRPRVTVTVFTTPANRP 49 (263)
Q Consensus 22 ~P~l~Lak~La~~~G~~VT~~~t~~~~~ 49 (263)
.|.+.+++.|..+ |.+|.+.=+.....
T Consensus 17 Sp~~~l~~~L~~~-g~~V~~~DP~v~~~ 43 (106)
T PF03720_consen 17 SPALELIEELKER-GAEVSVYDPYVDEE 43 (106)
T ss_dssp -HHHHHHHHHHHT-T-EEEEE-TTSHHH
T ss_pred CHHHHHHHHHHHC-CCEEEEECCccChH
Confidence 5899999999999 99998886654433
No 176
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.15 E-value=1.6e+02 Score=21.18 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.3
Q ss_pred EEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCC
Q 037334 11 VLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTP 45 (263)
Q Consensus 11 v~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~ 45 (263)
+++|.-+..+-..+++.|..|+...+.+|+++...
T Consensus 2 ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~ 36 (132)
T cd01988 2 ILVPVANPNTARDLLELAAALARAQNGEIIPLNVI 36 (132)
T ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 56788778888889999999998546777777553
No 177
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=24.14 E-value=2.5e+02 Score=26.83 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEec
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDI 68 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~l 68 (263)
++.||+.|... |++| +.|....+.++. .+|....+
T Consensus 13 iv~lAk~L~~l-GfeI--iATgGTak~L~e-------~GI~v~~V 47 (511)
T TIGR00355 13 IVEFAQGLVER-GVEL--LSTGGTAKLLAE-------AGVPVTEV 47 (511)
T ss_pred HHHHHHHHHHC-CCEE--EEechHHHHHHH-------CCCeEEEe
Confidence 67899999999 9986 466655555543 35555544
No 178
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.58 E-value=2e+02 Score=22.32 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=34.1
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCch
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRP 49 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~ 49 (263)
+++.-.||.|=......|++.++.+ |.+|.++.......
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCCh
Confidence 5677789999999999999999999 99999999886543
No 179
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.57 E-value=3.2e+02 Score=26.09 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCchhhhhhhccCCCCCceEEecCCCCCCCCCCCCCCCCCCCCCccchhHHHHHH--
Q 037334 23 PILNLAQLLLRRPRVTVTVFTTPANRPFTSKFLSNSSTAACCIIDIPYPENVPEIPAGVESTDKLPSMSLYVPFTRAT-- 100 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 100 (263)
=+++||+.|.+. |+++ +.|......++. .+|....+.- ..++|+-... ... .+...+...+
T Consensus 16 ~iv~lAk~L~~l-GfeI--~AT~GTak~L~e-------~GI~v~~V~k---~TgfpEil~G--RVK--TLHP~IhgGiLa 78 (513)
T PRK00881 16 GIVEFAKALVEL-GVEI--LSTGGTAKLLAE-------AGIPVTEVSD---VTGFPEILDG--RVK--TLHPKIHGGILA 78 (513)
T ss_pred cHHHHHHHHHHC-CCEE--EEcchHHHHHHH-------CCCeeEEeec---ccCCchhcCC--ccc--cCCchhhhhhcc
Confidence 378999999999 9986 466655555543 3555554431 1355542211 111 1111121111
Q ss_pred -HhcHHHHHHHHhhC-CCCcEEEEcCc
Q 037334 101 -KLMQPHFERALESL-PRVSFMVSDGF 125 (263)
Q Consensus 101 -~~~~~~l~~~l~~~-~~~~~vI~D~~ 125 (263)
+.....++++-+.- .++|+||+.++
T Consensus 79 ~r~~~~h~~~l~~~~i~~IDlVvvNLY 105 (513)
T PRK00881 79 RRDNPEHVAALEEHGIEPIDLVVVNLY 105 (513)
T ss_pred CCCCHHHHHHHHHcCCCceeEEEEeCc
Confidence 22334555543332 57899998865
No 180
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=23.45 E-value=71 Score=29.15 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTP 45 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~ 45 (263)
-||+.|++.| ++|... ||++.++...
T Consensus 46 lGh~v~l~~l-~~lq~~-G~~~~iligd 71 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQA-GHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHHH-HHHHHC-CCcEEEEEec
Confidence 4999997665 688888 9999988654
No 181
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.40 E-value=1.5e+02 Score=26.36 Aligned_cols=40 Identities=5% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhhHHH--HHHhCCCeEEEec
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWTLDS--ANKFGFPRFVFYG 145 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~~~v--A~~lgiP~v~f~~ 145 (263)
..+.+++++. +||+||++.-......+ +..+++|.+...+
T Consensus 94 ~~l~~~l~~~-~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 94 KRLKLLLQAE-KPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHHHh-CcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 4566777775 99999998543322222 2345789875443
No 182
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=23.30 E-value=5.7e+02 Score=23.26 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcC-CCceEE---EEeCCC
Q 037334 22 IPILNLAQLLLRR-PRVTVT---VFTTPA 46 (263)
Q Consensus 22 ~P~l~Lak~La~~-~G~~VT---~~~t~~ 46 (263)
.-.+.+|++|..+ +|++|. ++.+..
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~ 39 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGR 39 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCH
Confidence 4467889999873 399999 887764
No 183
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=23.15 E-value=2.1e+02 Score=21.12 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=33.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
|+++.--++.|=......|++.|+.+ |.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 47788889999999999999999999 99999888875
No 184
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=23.12 E-value=1.5e+02 Score=25.16 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCCChHHHHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 16 MSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 16 p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
.|.|=..-.+-||..|+.+ |-+|+++=+..|.+..
T Consensus 11 GGaGKTT~~~~LAs~la~~-G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAAR-GARVALIDADPNQPLA 45 (231)
T ss_pred CCCcHHHHHHHHHHHHHHC-CCeEEEEeCCCCCcHH
Confidence 6789999999999999999 9999999999887654
No 185
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.00 E-value=59 Score=23.96 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=23.1
Q ss_pred ecCCCCCChHHHHHHHHHHHcCCCceEEEEeC
Q 037334 13 FPFMSKGHIIPILNLAQLLLRRPRVTVTVFTT 44 (263)
Q Consensus 13 vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t 44 (263)
.-+||+|+++=-.+|++++.+. |. +|+.+
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~-gi--~fiGp 105 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDA-GI--IFIGP 105 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHT-T---EESSS
T ss_pred ccccccchhHHHHHHHHHHHHC-CC--EEECc
Confidence 3479999999999999999988 75 45544
No 186
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=22.97 E-value=1.8e+02 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=23.6
Q ss_pred HHhhCCCCcEEEEcCcch--hhHHHHHHhCCCeEEEec
Q 037334 110 ALESLPRVSFMVSDGFLW--WTLDSANKFGFPRFVFYG 145 (263)
Q Consensus 110 ~l~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 145 (263)
.+++ .++.||+++.... .+..+|++.|++.+.+.+
T Consensus 215 ~ik~-~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 215 FVKK-SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHH-cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 3444 3788888887654 456678888888766554
No 187
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.68 E-value=1.9e+02 Score=24.66 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchhh-------HHHHHHhCCCeEEEe
Q 037334 105 PHFERALESLPRVSFMVSDGFLWWT-------LDSANKFGFPRFVFY 144 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~~-------~~vA~~lgiP~v~f~ 144 (263)
+.+++++++. ++++ |.|.-.+++ .++++++|||.+-|-
T Consensus 55 ~~l~~~l~~~-~i~~-VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 55 EGLAAYLREE-GIDL-VIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHC-CCCE-EEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4566666663 7776 457666554 455788888887765
No 188
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=22.47 E-value=72 Score=29.63 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 22 IPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 22 ~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
.=.-.|++.|+.+ ||+|+++++..
T Consensus 21 ~~v~~L~~aL~~~-G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAAL-GHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3346799999999 99999999754
No 189
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.34 E-value=2.1e+02 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=34.3
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCC
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPAN 47 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~ 47 (263)
.-++++..+|.|=..-...||..|+.+ |.+|.++.+...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCC
Confidence 356677889999999999999999998 999999998854
No 190
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=22.15 E-value=1.6e+02 Score=26.03 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=37.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcC-CCceEEEEeCCCCchhhh
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRR-PRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~-~G~~VT~~~t~~~~~~~~ 52 (263)
+|+++-..+.|-+.=...+.+.|.++ ++.+||+++.+.+...++
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS 46 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh
Confidence 68999999999999999999999886 589999999876554443
No 191
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=22.11 E-value=50 Score=23.77 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=17.8
Q ss_pred cccccEEEEcchhhhh---HHHHHHHhh
Q 037334 212 TSNSYGMIVNSFYELE---PLFADHCNL 236 (263)
Q Consensus 212 ~~~a~~vlvNTf~eLE---~~~l~~l~~ 236 (263)
..+||.+++|||-=.| .+.+..+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~ 61 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRK 61 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHH
Confidence 3689999999996555 455555554
No 192
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=22.03 E-value=2.4e+02 Score=25.32 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=31.2
Q ss_pred hcHHHHHHHHhhCCCCcEEEE--cCcch-hhHHHHHHhCCCeEEEecc
Q 037334 102 LMQPHFERALESLPRVSFMVS--DGFLW-WTLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 102 ~~~~~l~~~l~~~~~~~~vI~--D~~~~-~~~~vA~~lgiP~v~f~~~ 146 (263)
.+...+.+++++. +||+|++ |.+.. .+.-+|..+|||.+.+..+
T Consensus 80 ~~~~~~~~~~~~~-~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 80 LTIIGFSDAFERL-KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 3456677777776 8998765 44444 4477789999999976655
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.66 E-value=2.2e+02 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=36.5
Q ss_pred CCeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCch
Q 037334 7 DHHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRP 49 (263)
Q Consensus 7 ~~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~ 49 (263)
...|+++-.+|.|=..-...||+.|..+ |++|.++++.....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCH
Confidence 3467888899999999999999999999 99999999876543
No 194
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.62 E-value=2.2e+02 Score=26.52 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=29.6
Q ss_pred HhcHHHHHHHHhhCCCCcEEEEcCcchh----------hHHHHHHhCCCeEEEe
Q 037334 101 KLMQPHFERALESLPRVSFMVSDGFLWW----------TLDSANKFGFPRFVFY 144 (263)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 144 (263)
+.....+.+.+++. .+|++|+--.+.. +..|.+++|||.++-.
T Consensus 62 eea~~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKGA-NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34445666677776 9999999864432 2345678999998754
No 195
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.60 E-value=1.7e+02 Score=24.39 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchh--hHH-HHHHhCCCeEEEecc
Q 037334 105 PHFERALESLPRVSFMVSDGFLWW--TLD-SANKFGFPRFVFYGM 146 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~--~~~-vA~~lgiP~v~f~~~ 146 (263)
..+|++++- +||+||....... ..+ +-+.+|+|++.+...
T Consensus 65 ~n~E~i~~l--~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 65 PNYEKIAAL--KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCHHHHHhc--CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 456666654 8999998755433 233 334489999888765
No 196
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.59 E-value=3.1e+02 Score=19.55 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=35.4
Q ss_pred HHHHHHHhhCCCCcEEEEcCcch-----h--hHHHHHHhCCCeEEEecccHHHHHHHHHHh
Q 037334 105 PHFERALESLPRVSFMVSDGFLW-----W--TLDSANKFGFPRFVFYGMNNYAMSVSRSVG 158 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~-----~--~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 158 (263)
..++++++.. .+|++..|.... + ..+.|+++|+++..=...+...+++..|+.
T Consensus 8 ~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hla 67 (111)
T PF13378_consen 8 HDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLA 67 (111)
T ss_dssp HHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHH
Confidence 5577777764 789999995432 1 356789999998766555555666666554
No 197
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.50 E-value=2.2e+02 Score=26.47 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=29.6
Q ss_pred HhcHHHHHHHHhhCCCCcEEEEcCcchh----------hHHHHHHhCCCeEEEe
Q 037334 101 KLMQPHFERALESLPRVSFMVSDGFLWW----------TLDSANKFGFPRFVFY 144 (263)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 144 (263)
+.....+.+.+++. .+|++|+--.+.. +..|.+++|||.++-.
T Consensus 62 eea~~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDK-EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34445666677776 9999999864432 2345678999998754
No 198
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=21.43 E-value=5.9e+02 Score=23.89 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=26.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHcCCCceEEEE
Q 037334 10 VVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVF 42 (263)
Q Consensus 10 vv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~ 42 (263)
|+.=|-.+.|-..=.+.|++.|.++ |++|--+
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~r-g~~Vqpf 35 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPF 35 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhc-CCccccc
Confidence 3444667889999999999999999 9887654
No 199
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=21.21 E-value=98 Score=25.39 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFT 51 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~ 51 (263)
+..|++.|.+. ||+|+++.+..+.+-.
T Consensus 16 i~aL~~~L~~~-g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 16 IRALAKALSAL-GHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHTTT-SSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHhc-CCeEEEEeCCCCCcCc
Confidence 56789999777 8999999998776543
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=21.18 E-value=1.8e+02 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=33.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCc
Q 037334 9 HVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANR 48 (263)
Q Consensus 9 hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~ 48 (263)
-++++-..|.|=..-...||.++..+ |.+|.++++....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC
Confidence 46778889999999999999999999 9999999998653
No 201
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=21.15 E-value=1.5e+02 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 18 KGHIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 18 ~GHi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
-|--.-...|++.|+++ |+.|++++...
T Consensus 13 gG~~~~~~~l~~~L~~~-g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSAR-GPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhc-CCeEEEEEeec
Confidence 57777888999999999 99999998654
No 202
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.08 E-value=2.2e+02 Score=23.43 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=31.8
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCC
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTP 45 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~ 45 (263)
.-|+++-.|.+---.=++.|||.|... |+.|-++...
T Consensus 109 riVaFvgSpi~esedeLirlak~lkkn-nVAidii~fG 145 (243)
T COG5148 109 RIVAFVGSPIQESEDELIRLAKQLKKN-NVAIDIIFFG 145 (243)
T ss_pred EEEEEecCcccccHHHHHHHHHHHHhc-CeeEEEEehh
Confidence 357888899998889999999999999 9988887654
No 203
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=20.77 E-value=2.1e+02 Score=25.68 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=25.7
Q ss_pred EEecCCCCCChHHHHHHHHHHHcC--CCceEEEEeCC
Q 037334 11 VLFPFMSKGHIIPILNLAQLLLRR--PRVTVTVFTTP 45 (263)
Q Consensus 11 v~vp~p~~GHi~P~l~Lak~La~~--~G~~VT~~~t~ 45 (263)
++-..-|.||.--.-.|+..|..+ .+.+|+++-.-
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~ 39 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDLW 39 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEehh
Confidence 455567899999999999999753 14667776443
No 204
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.72 E-value=1.6e+02 Score=27.35 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCCceEEEE
Q 037334 23 PILNLAQLLLRRPRVTVTVF 42 (263)
Q Consensus 23 P~l~Lak~La~~~G~~VT~~ 42 (263)
-+-+|-+.|..- |.+++++
T Consensus 182 d~~elk~lL~~~-Gl~~~~l 200 (432)
T TIGR01285 182 DIEELRRMVEAF-GLKPIIL 200 (432)
T ss_pred CHHHHHHHHHHc-CCceEEe
Confidence 456666666666 7777654
No 205
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=20.65 E-value=99 Score=25.55 Aligned_cols=13 Identities=23% Similarity=0.023 Sum_probs=10.8
Q ss_pred CCCcEEEEcCcch
Q 037334 115 PRVSFMVSDGFLW 127 (263)
Q Consensus 115 ~~~~~vI~D~~~~ 127 (263)
.++||||+|+.-.
T Consensus 135 r~VdvVlSDMapn 147 (232)
T KOG4589|consen 135 RPVDVVLSDMAPN 147 (232)
T ss_pred CcccEEEeccCCC
Confidence 4899999999753
No 206
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=20.56 E-value=1.3e+02 Score=25.95 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=29.8
Q ss_pred CeEEEecCCCCCChHHHHHHHHHHHcCCCceEEEEeCCCCch
Q 037334 8 HHVVLFPFMSKGHIIPILNLAQLLLRRPRVTVTVFTTPANRP 49 (263)
Q Consensus 8 ~hvv~vp~p~~GHi~P~l~Lak~La~~~G~~VT~~~t~~~~~ 49 (263)
.+++++. .|.| +.|++.+++.|+++ |.+|+++....+.+
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~-~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEA-GNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHC-CCeEEEEEecCCHH
Confidence 4676665 3444 89999999999998 88999887765543
No 207
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=20.54 E-value=1.5e+02 Score=20.85 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcC-CCceEEEEeCCCCch
Q 037334 21 IIPILNLAQLLLRR-PRVTVTVFTTPANRP 49 (263)
Q Consensus 21 i~P~l~Lak~La~~-~G~~VT~~~t~~~~~ 49 (263)
+.||+.+.+.+.++ .+.+|+++-...+.+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~ 37 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTPE 37 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcccc
Confidence 78999999999943 278999987665443
No 208
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=20.46 E-value=88 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhhh
Q 037334 24 ILNLAQLLLRRPRVTVTVFTTPANRPFTS 52 (263)
Q Consensus 24 ~l~Lak~La~~~G~~VT~~~t~~~~~~~~ 52 (263)
++++||+|.+. |++ ++.|....+.++
T Consensus 2 ~~~~a~~l~~l-G~~--i~AT~gTa~~L~ 27 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFE--IYATEGTAKFLK 27 (95)
T ss_dssp HHHHHHHHHHT-TSE--EEEEHHHHHHHH
T ss_pred HHHHHHHHHHC-CCE--EEEChHHHHHHH
Confidence 57899999999 965 677766555554
No 209
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.39 E-value=2.4e+02 Score=27.02 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCcEEEEcCcchhhHHHHHHhCCCeEEEecc
Q 037334 115 PRVSFMVSDGFLWWTLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 115 ~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 146 (263)
.++++||-|.. +.+.|+++|++.+...+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 48999999985 579999999999977664
No 210
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.34 E-value=2e+02 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHcCCCceEEEEeCCC
Q 037334 20 HIIPILNLAQLLLRRPRVTVTVFTTPA 46 (263)
Q Consensus 20 Hi~P~l~Lak~La~~~G~~VT~~~t~~ 46 (263)
--.-+.++++.|.++ |++|++++...
T Consensus 13 ~~~~~~~~~~~L~~~-g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAA-GHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhC-CCeEEEEEecC
Confidence 445688999999999 99999998754
No 211
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=20.33 E-value=3.2e+02 Score=22.17 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCcEEEEcCc--chhhHHHHHHhCCCeEEEecc
Q 037334 104 QPHFERALESLPRVSFMVSDGF--LWWTLDSANKFGFPRFVFYGM 146 (263)
Q Consensus 104 ~~~l~~~l~~~~~~~~vI~D~~--~~~~~~vA~~lgiP~v~f~~~ 146 (263)
...+.+.+++. ++|+|+.=-. ..++..+|.++|+|.++..-.
T Consensus 39 ~~~la~~~~~~-~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 39 GKEFARRFKDE-GITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred HHHHHHHhccC-CCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 34444444453 7899875433 346888999999999877654
No 212
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.23 E-value=2e+02 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCCcEEEEcCcchh-hHHHHHHhCCCeEEEeccc
Q 037334 105 PHFERALESLPRVSFMVSDGFLWW-TLDSANKFGFPRFVFYGMN 147 (263)
Q Consensus 105 ~~l~~~l~~~~~~~~vI~D~~~~~-~~~vA~~lgiP~v~f~~~~ 147 (263)
..+|++++- +||+||......- ..+--++.|+|++.+...+
T Consensus 51 ~n~E~l~~l--~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~ 92 (195)
T cd01143 51 PNVEKIVAL--KPDLVIVSSSSLAELLEKLKDAGIPVVVLPAAS 92 (195)
T ss_pred CCHHHHhcc--CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCC
Confidence 456776654 8999988643322 2344577899998886543
Done!