BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037337
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 112 NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFD--------LVVFSEMSQSPDIRKVQ 163
N + + I GM G GK++L E R +H L + V + +S + K+Q
Sbjct: 144 NGEPGWVTIYGMAGCGKSVLAAEAVR---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200
Query: 164 G---------EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGI 214
+ +L L E + R R L L + R L+ILD++W+ L+
Sbjct: 201 NLCMRLDQEESFSQRLPLNIEEAKD--RLRVLM--LRKHPRSLLILDDVWDPWVLKAFD- 255
Query: 215 PHGDDHKGCKVLFTARSLDVLSRKM 239
C++L T R V M
Sbjct: 256 ------NQCQILLTTRDKSVTDSVM 274
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 13 GKCLAPSTERQFSY---VRDYTSNFENLNTQVEKLEGEIIRHRLSKEAVRQLDAIVKLRK 69
G L+P + Y VR ++FE T+V + E + R + EA RQ+ + R
Sbjct: 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD 145
Query: 70 DGRFERIS---HSIIPEDTLLMSNKGYEAFESRMSTLNDILG 108
+ + H + PE L+ +K +++E+ D+L
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 31/137 (22%)
Query: 120 ICGMGGIGKTMLEKEVARKAKNHKLFD--------LVVFSEMSQSPDIRKVQG------- 164
I GM G GK++L E R +H L + V + +S + K+Q
Sbjct: 152 IHGMAGCGKSVLAAEAVR---DHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQ 208
Query: 165 --EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKG 222
+ +L L E + R R L L + R L+ILD++W+ L+
Sbjct: 209 DESFSQRLPLNIEEAKD--RLRILM--LRKHPRSLLILDDVWDSWVLKAFD-------SQ 257
Query: 223 CKVLFTARSLDVLSRKM 239
C++L T R V M
Sbjct: 258 CQILLTTRDKSVTDSVM 274
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 31/140 (22%)
Query: 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFD--------LVVFSEMSQSPDIRKVQG---- 164
+ I GM G GK++L E R +H L + V + +S + K+Q
Sbjct: 155 WVTIHGMAGCGKSVLAAEAVR---DHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 211
Query: 165 -----EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDD 219
+ +L L E + R R L L + R L+ILD++W+ L+
Sbjct: 212 LDQDESFSQRLPLNIEEAKD--RLRILM--LRKHPRSLLILDDVWDSWVLKAFD------ 261
Query: 220 HKGCKVLFTARSLDVLSRKM 239
C++L T R V M
Sbjct: 262 -SQCQILLTTRDKSVTDSVM 280
>pdb|3SXK|A Chain A, Zn2+-Bound Fcd Domain Of Tm0439, A Putative
Transcriptional Regulator
pdb|3SXK|B Chain B, Zn2+-Bound Fcd Domain Of Tm0439, A Putative
Transcriptional Regulator
pdb|3SXM|A Chain A, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
Regulator
pdb|3SXM|B Chain B, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
Regulator
Length = 140
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 150 FSEMSQSPDIRKVQGEIADKLGLTFRE--ESESGRARSLFSRLNREKRILVILDNIWEHL 207
F +++ S ++ +++GEI D RE + R LF R + + I+ + + IW+ +
Sbjct: 27 FDKIAGSEELLEIKGEIDDVAASAAREIFDDSDERLHKLFIRASGNELIISLYEKIWDRI 86
Query: 208 DL 209
DL
Sbjct: 87 DL 88
>pdb|3FMS|A Chain A, Crystal Structure Of Tm0439, A Gntr Transcriptional
Regulator
Length = 209
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 150 FSEMSQSPDIRKVQGEIADKLGLTFRE--ESESGRARSLFSRLNREKRILVILDNIWEHL 207
F +++ S ++ +++GEI D RE + R LF R + + I+ + + IW+ +
Sbjct: 93 FDKIAGSEELLEIKGEIDDVAASAAREIFDDSDERLHKLFIRASGNELIISLYEKIWDRI 152
Query: 208 DL 209
DL
Sbjct: 153 DL 154
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 31/145 (21%)
Query: 112 NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFD--------LVVFSEMSQSPDIRKVQ 163
N + + I GM G GK++L E R +H L + V + +S + K+Q
Sbjct: 151 NGEPGWVTIYGMAGCGKSVLAAEAVR---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 207
Query: 164 G---------EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGI 214
+ +L L E + R R L L + R L+ILD++W+ L+
Sbjct: 208 NLCMRLDQEESFSQRLPLNIEEAKD--RLRVLM--LRKHPRSLLILDDVWDPWVLKAFD- 262
Query: 215 PHGDDHKGCKVLFTARSLDVLSRKM 239
C++L T V M
Sbjct: 263 ------NQCQILLTTSDKSVTDSVM 281
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 156 SPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205
SPD ++ Q + +++ T RE + G A +F+R N K V +WE
Sbjct: 9 SPDDKEFQ-SVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWE 57
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 156 SPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205
SPD ++ Q + +++ T RE + G A +F+R N K V +WE
Sbjct: 37 SPDDKEFQ-SVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWE 85
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 156 SPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205
SPD ++ Q + +++ T RE + G A +F+R N K V +WE
Sbjct: 37 SPDDKEFQ-SVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWE 85
>pdb|1GSU|A Chain A, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
1.94 Angstrom Resolution
pdb|1GSU|B Chain B, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
1.94 Angstrom Resolution
Length = 219
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 127 GKTMLEKEVARKAKNHKLFDL-VVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARS 185
G+T +EK+ +NH L DL + F+ + SPD K++ ++L R+ S +RS
Sbjct: 87 GETEVEKQRVDVLENH-LMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRS 145
Query: 186 LF 187
F
Sbjct: 146 WF 147
>pdb|3CG1|A Chain A, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
pdb|3CG1|B Chain B, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 296
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 64 IVKLRKDGRFERISHSIIPEDTLLMSNKGYEAFESRMSTLNDILGALRNPDISMLGICGM 123
++KL + I +I E+T + SN G + + + T+N +R + +LG+
Sbjct: 141 VIKLADLYYGKEIFKELIEENTNIYSN-GTQIYAPKEITVNPGKIVIRPKETDLLGLVES 199
Query: 124 GGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR-KVQGEIADKLGLT 173
G I + K V AK H L + + SE++ + K G+I+ LG T
Sbjct: 200 GSIDYIFIYKSV---AKQHNLSYITLPSEINLGDFSKEKFYGQISITLGST 247
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 34/163 (20%)
Query: 32 SNFENLNTQVEKLEGEIIRHRLSKEAVRQLDAIVKLRKDGRFERISHSIIPEDTLLMS-- 89
S+ EN + +V +R ++K +QL A K +DG+ I+ IP TL+ +
Sbjct: 249 SHLENTSIKVH------LRTAVAKVEEKQLLAKTK-HEDGK---ITEETIPYGTLIWATG 298
Query: 90 NKGYEAF------------ESRMSTLNDILGALRNPDISMLGICGMGGIGKT--MLEKEV 135
NK R +ND L + +I +G G+ T + +E
Sbjct: 299 NKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEA 358
Query: 136 ARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREES 178
AKN F +M+Q P+ +K DK+ L F E +
Sbjct: 359 EYLAKN--------FDKMAQIPNFQKNLSSRKDKIDLLFEENN 393
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 73 FERISHSIIPEDTLLMSNKGYEAFESRMSTLN---------DILGALRNPDISMLGICGM 123
F S I+P +G FE+ + L D++ L N DI + + G
Sbjct: 143 FATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGA 202
Query: 124 GGIGKTMLEKEVARKAKNHKLFDLV 148
G IG + E RK K L D+V
Sbjct: 203 GYIGVELAEA-FQRKGKEVVLIDVV 226
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 73 FERISHSIIPEDTLLMSNKGYEAFESRMSTLN---------DILGALRNPDISMLGICGM 123
F S I+P +G FE+ + L D++ L N DI + + G
Sbjct: 143 FATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGA 202
Query: 124 GGIGKTMLEKEVARKAKNHKLFDLV 148
G IG + E RK K L D+V
Sbjct: 203 GYIGVELAEA-FQRKGKEVVLIDVV 226
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|3D5A|X Chain X, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|X Chain X, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3MR8|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s)
Length = 354
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 35 ENLNTQVEKLEGEIIRHRLSKEAVRQLDAIVKLR 68
E L + E LE E+ RH L K+ + + DAIV++R
Sbjct: 79 EALLARKEALEKELERHLLPKDPMDERDAIVEIR 112
>pdb|4IFQ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nup192,
Residues 2 To 960 [scnup192(2-960)]
Length = 970
Score = 27.3 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 19 STERQFSYVRDYTSNFENLNTQVEKLEGEIIRHRLSKEAVRQLD-AIVKLRKDGRFERIS 77
S E F ++ + +NLN +KL+ R +L K + D + K+ ++ FE IS
Sbjct: 19 SGEFDFDLFKEVLPDLQNLNLNTDKLKNNASRSQLEKGEIELSDGSTFKVNQEFIFEAIS 78
Query: 78 HS 79
S
Sbjct: 79 LS 80
>pdb|3SXY|A Chain A, Metal-Free Full-Length Structure Of Tm0439, A
Metal-Binding Fcd Family Transcriptional Regulator
pdb|3SXY|B Chain B, Metal-Free Full-Length Structure Of Tm0439, A
Metal-Binding Fcd Family Transcriptional Regulator
Length = 218
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 150 FSEMSQSPDIRKVQGEIADKLGLTFRE--ESESGRARSLFSRLNREKRILVILDNIWEHL 207
F +++ S ++ +++GEI D RE + R LF R + + I+ + + IW+ +
Sbjct: 102 FDKIAGSEELLEIKGEIDDVEKSAKREIFDDSDERLHKLFIRASGNELIISLYEKIWDRI 161
Query: 208 DL 209
DL
Sbjct: 162 DL 163
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 34/161 (21%)
Query: 32 SNFENLNTQVEKLEGEIIRHRLSKEAVRQLDAIVKLRKDGRFERISHSIIPEDTLLMS-- 89
S+ EN + +V +R ++K +QL A K +DG+ I+ IP TL+ +
Sbjct: 280 SHLENTSIKVH------LRTAVAKVEEKQLLAKTK-HEDGK---ITEETIPYGTLIWATG 329
Query: 90 NKGYEAF------------ESRMSTLNDILGALRNPDISMLGICGMGGIGKT--MLEKEV 135
NK R +ND L + +I +G G+ T + +E
Sbjct: 330 NKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEA 389
Query: 136 ARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE 176
AKN F +M+Q P+ +K DK+ L F E
Sbjct: 390 EYLAKN--------FDKMAQIPNFQKNLSSRKDKIDLLFEE 422
>pdb|1C72|A Chain A, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|B Chain B, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|C Chain C, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|D Chain D, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
Length = 219
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 127 GKTMLEKEVARKAKNHKLFDL-VVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARS 185
G+T +EK+ +NH L DL + F+ + SPD K++ + L R+ S +RS
Sbjct: 87 GETEVEKQRVDVLENH-LMDLRMAFARLCYSPDFEKLKPAYLELLPGKLRQLSRFLGSRS 145
Query: 186 LF 187
F
Sbjct: 146 WF 147
>pdb|3SXZ|A Chain A, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
Regulator
pdb|3SXZ|B Chain B, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
Regulator
Length = 140
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 150 FSEMSQSPDIRKVQGEIADKLGLTFRE--ESESGRARSLFSRLNREKRILVILDNIWEHL 207
F +++ S ++ +++GEI D RE + R LF R + + I+ + + IW+ +
Sbjct: 27 FDKIAGSEELLEIKGEIDDVEKSAKREIFDDSDERLHKLFIRASGNELIISLYEKIWDRI 86
Query: 208 DL 209
DL
Sbjct: 87 DL 88
>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
pdb|1SG0|A Chain A, Crystal Structure Analysis Of Qr2 In Complex With
Resveratrol
pdb|1SG0|B Chain B, Crystal Structure Analysis Of Qr2 In Complex With
Resveratrol
pdb|1XI2|A Chain A, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
pdb|1XI2|B Chain B, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
pdb|2QMY|A Chain A, Quinone Reductase 2 In Complex With Adrenochrome
pdb|2QMY|B Chain B, Quinone Reductase 2 In Complex With Adrenochrome
pdb|2QMZ|A Chain A, Quinone Reductase 2 In Complex With Dopamine
pdb|2QMZ|B Chain B, Quinone Reductase 2 In Complex With Dopamine
pdb|2QX8|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX8|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX9|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX9|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX4|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX4|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX6|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX6|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|3O2N|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3O2N|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NFR|A Chain A, Casimiroin Analog Inhibitor Of Quinone Reductase 2
pdb|3NFR|B Chain B, Casimiroin Analog Inhibitor Of Quinone Reductase 2
pdb|3NHF|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHF|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHJ|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHJ|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHK|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHK|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHL|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHL|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHP|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHP|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHR|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHR|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHS|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHS|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHU|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHU|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHW|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHW|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHY|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHY|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3UXE|A Chain A, Design, Synthesis And Biological Evaluation Of Potent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors For Quinone Reductase 2
pdb|3UXE|B Chain B, Design, Synthesis And Biological Evaluation Of Potent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors For Quinone Reductase 2
pdb|3UXH|A Chain A, Design, Synthesis And Biological Evaluation Of Potetent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors Of Quinone Reductase 2
pdb|3UXH|B Chain B, Design, Synthesis And Biological Evaluation Of Potetent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors Of Quinone Reductase 2
Length = 230
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 96 FESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVF 150
FE R +T DI G L NP++ G+ + L ++ + K + DLV+F
Sbjct: 46 FEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIF 99
>pdb|3TE7|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 5a1
pdb|3TE7|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 5a1
pdb|3TEM|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 6a1
pdb|3TEM|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 6a1
Length = 228
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 96 FESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVF 150
FE R +T DI G L NP++ G+ + L ++ + K + DLV+F
Sbjct: 45 FEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIF 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,395,609
Number of Sequences: 62578
Number of extensions: 243430
Number of successful extensions: 762
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 35
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)