Query 037337
Match_columns 247
No_of_seqs 232 out of 1987
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.5E-30 1.2E-34 239.5 24.3 150 97-247 161-314 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 3.6E-26 7.7E-31 191.5 12.8 147 99-246 1-153 (287)
3 PLN03210 Resistant to P. syrin 99.8 4E-19 8.6E-24 173.3 19.4 149 92-246 182-347 (1153)
4 PRK00411 cdc6 cell division co 99.4 1.2E-11 2.7E-16 108.2 15.5 115 92-206 28-150 (394)
5 TIGR02928 orc1/cdc6 family rep 99.3 4.9E-11 1.1E-15 103.3 15.8 116 91-206 12-141 (365)
6 PF05729 NACHT: NACHT domain 99.3 3E-11 6.5E-16 92.5 9.6 114 116-234 1-132 (166)
7 PF13401 AAA_22: AAA domain; P 99.2 4.7E-11 1E-15 88.1 8.5 115 115-231 4-125 (131)
8 COG1474 CDC6 Cdc6-related prot 99.2 5.1E-10 1.1E-14 96.4 14.0 117 92-208 15-137 (366)
9 cd00009 AAA The AAA+ (ATPases 99.1 8.8E-10 1.9E-14 82.1 11.7 123 97-233 1-131 (151)
10 TIGR03015 pepcterm_ATPase puta 99.1 3.6E-09 7.9E-14 87.8 15.6 91 113-206 41-135 (269)
11 PF01637 Arch_ATPase: Archaeal 99.1 1.2E-10 2.6E-15 94.0 5.1 139 96-236 1-170 (234)
12 PTZ00202 tuzin; Provisional 99.1 2.3E-08 5.1E-13 86.5 18.2 137 88-234 256-403 (550)
13 PRK04841 transcriptional regul 99.0 5.7E-09 1.2E-13 100.5 13.8 135 89-232 9-162 (903)
14 PF13191 AAA_16: AAA ATPase do 99.0 2.3E-09 4.9E-14 83.7 8.8 60 95-156 1-63 (185)
15 PF13173 AAA_14: AAA domain 99.0 1.7E-09 3.8E-14 79.7 6.7 102 115-236 2-103 (128)
16 cd01128 rho_factor Transcripti 98.9 4.7E-09 1E-13 85.8 7.6 91 115-206 16-115 (249)
17 PRK12402 replication factor C 98.9 1.5E-08 3.4E-13 86.7 10.6 65 90-154 11-75 (337)
18 PTZ00112 origin recognition co 98.9 3.7E-08 8E-13 91.5 13.0 114 93-206 754-881 (1164)
19 COG2909 MalT ATP-dependent tra 98.9 6.8E-08 1.5E-12 88.9 14.2 140 88-233 13-171 (894)
20 COG2256 MGS1 ATPase related to 98.8 3.1E-08 6.6E-13 84.2 10.2 119 89-234 19-145 (436)
21 PLN03025 replication factor C 98.8 4.3E-08 9.4E-13 83.5 11.3 127 90-231 9-138 (319)
22 PRK13342 recombination factor 98.8 3.3E-08 7E-13 87.1 9.6 52 90-141 8-62 (413)
23 PRK07003 DNA polymerase III su 98.8 7.3E-08 1.6E-12 88.7 11.2 124 89-233 11-160 (830)
24 PRK00440 rfc replication facto 98.8 1.4E-07 3E-12 80.2 12.3 53 90-142 13-65 (319)
25 PRK09376 rho transcription ter 98.7 4.7E-08 1E-12 83.8 8.9 91 115-206 169-268 (416)
26 PRK14961 DNA polymerase III su 98.7 1.6E-07 3.5E-12 81.3 12.1 52 90-141 12-64 (363)
27 KOG2028 ATPase related to the 98.7 6.3E-08 1.4E-12 81.4 8.8 123 90-234 134-263 (554)
28 PRK04195 replication factor C 98.7 7.3E-08 1.6E-12 86.6 9.6 97 90-206 10-110 (482)
29 PRK14949 DNA polymerase III su 98.7 1E-07 2.2E-12 89.3 10.5 53 89-141 11-64 (944)
30 PRK14960 DNA polymerase III su 98.7 1.3E-07 2.8E-12 86.1 10.6 53 89-141 10-63 (702)
31 PRK12323 DNA polymerase III su 98.7 1.8E-07 4E-12 85.0 11.2 53 89-141 11-64 (700)
32 TIGR00635 ruvB Holliday juncti 98.7 2.3E-07 5E-12 78.5 11.2 48 94-141 4-56 (305)
33 PRK11331 5-methylcytosine-spec 98.7 1.4E-07 3.1E-12 82.5 10.0 110 93-206 174-284 (459)
34 TIGR03420 DnaA_homol_Hda DnaA 98.7 7.7E-08 1.7E-12 77.7 7.5 106 99-231 22-132 (226)
35 PRK06893 DNA replication initi 98.7 8E-08 1.7E-12 78.0 7.4 39 114-154 38-76 (229)
36 PRK14962 DNA polymerase III su 98.6 2.9E-07 6.2E-12 82.1 11.2 53 89-141 9-62 (472)
37 PRK14958 DNA polymerase III su 98.6 3E-07 6.5E-12 82.7 11.4 127 88-231 10-158 (509)
38 TIGR00767 rho transcription te 98.6 2.3E-07 5.1E-12 79.9 10.1 91 115-206 168-267 (415)
39 PHA02544 44 clamp loader, smal 98.6 2.5E-07 5.4E-12 78.6 10.2 121 89-232 16-141 (316)
40 KOG2543 Origin recognition com 98.6 4.2E-07 9.1E-12 76.9 10.9 113 93-210 5-131 (438)
41 PF05496 RuvB_N: Holliday junc 98.6 2.6E-07 5.6E-12 73.5 9.2 54 89-142 19-77 (233)
42 PRK14957 DNA polymerase III su 98.6 5E-07 1.1E-11 81.6 12.0 53 89-141 11-64 (546)
43 PRK14969 DNA polymerase III su 98.6 6.2E-07 1.3E-11 81.2 12.2 53 89-141 11-64 (527)
44 KOG2227 Pre-initiation complex 98.6 9.4E-07 2E-11 76.6 12.6 138 91-228 147-293 (529)
45 PRK14963 DNA polymerase III su 98.6 5.2E-07 1.1E-11 81.1 11.4 52 90-141 10-62 (504)
46 PF00004 AAA: ATPase family as 98.6 2E-07 4.3E-12 68.5 7.2 69 118-206 1-70 (132)
47 PRK05564 DNA polymerase III su 98.6 8.2E-07 1.8E-11 75.5 11.9 124 94-234 4-135 (313)
48 PRK14964 DNA polymerase III su 98.6 6.8E-07 1.5E-11 79.7 11.6 125 89-230 8-154 (491)
49 PRK14956 DNA polymerase III su 98.6 2.8E-07 6.1E-12 81.4 9.0 143 89-234 13-164 (484)
50 PRK08691 DNA polymerase III su 98.6 4.7E-07 1E-11 83.1 10.7 53 89-141 11-64 (709)
51 smart00382 AAA ATPases associa 98.6 5.2E-07 1.1E-11 66.3 9.2 90 116-208 3-92 (148)
52 PRK14951 DNA polymerase III su 98.6 7.1E-07 1.5E-11 81.7 11.6 53 89-141 11-64 (618)
53 TIGR02903 spore_lon_C ATP-depe 98.6 6E-06 1.3E-10 76.2 17.7 52 90-141 150-201 (615)
54 PRK07994 DNA polymerase III su 98.6 3.9E-07 8.5E-12 83.6 9.8 53 89-141 11-64 (647)
55 PF05621 TniB: Bacterial TniB 98.6 1.1E-06 2.4E-11 72.9 11.6 106 101-206 44-157 (302)
56 PRK00080 ruvB Holliday junctio 98.6 1.1E-06 2.3E-11 75.2 12.0 52 90-141 21-77 (328)
57 CHL00095 clpC Clp protease ATP 98.6 5.9E-07 1.3E-11 85.6 11.3 101 93-205 178-282 (821)
58 PRK14955 DNA polymerase III su 98.5 9.7E-07 2.1E-11 77.4 11.3 53 90-142 12-65 (397)
59 PRK06645 DNA polymerase III su 98.5 1.3E-06 2.9E-11 78.3 12.1 52 90-141 17-69 (507)
60 TIGR02397 dnaX_nterm DNA polym 98.5 1.7E-06 3.8E-11 74.6 12.4 51 90-140 10-61 (355)
61 PRK08727 hypothetical protein; 98.5 4.5E-07 9.7E-12 73.8 8.2 111 94-231 19-135 (233)
62 TIGR03345 VI_ClpV1 type VI sec 98.5 7.9E-07 1.7E-11 84.7 10.7 51 91-141 184-234 (852)
63 PRK10865 protein disaggregatio 98.5 1E-06 2.2E-11 84.2 11.3 50 92-141 176-225 (857)
64 PRK05896 DNA polymerase III su 98.5 9.9E-07 2.1E-11 80.0 10.7 53 89-141 11-64 (605)
65 TIGR02639 ClpA ATP-dependent C 98.5 1E-06 2.3E-11 82.9 11.1 103 92-206 180-286 (731)
66 TIGR01242 26Sp45 26S proteasom 98.5 6.4E-07 1.4E-11 77.7 8.8 50 93-142 121-183 (364)
67 PRK03992 proteasome-activating 98.5 9.5E-07 2.1E-11 77.2 9.7 49 93-141 130-191 (389)
68 PRK14952 DNA polymerase III su 98.5 2.1E-06 4.6E-11 78.2 11.9 53 89-141 8-61 (584)
69 PRK13341 recombination factor 98.5 5.4E-07 1.2E-11 84.1 8.2 52 90-141 24-78 (725)
70 PRK07940 DNA polymerase III su 98.5 2.1E-06 4.6E-11 74.9 11.3 48 94-141 5-62 (394)
71 PRK07764 DNA polymerase III su 98.4 1.8E-06 3.9E-11 81.6 11.2 51 91-141 12-63 (824)
72 PRK09111 DNA polymerase III su 98.4 2.2E-06 4.7E-11 78.5 11.0 53 90-142 20-73 (598)
73 PRK14970 DNA polymerase III su 98.4 3.5E-06 7.5E-11 73.2 11.7 52 90-141 13-65 (367)
74 PRK08084 DNA replication initi 98.4 1.9E-06 4.1E-11 70.2 9.0 52 101-154 31-82 (235)
75 PRK08181 transposase; Validate 98.4 4.9E-06 1.1E-10 68.9 11.4 80 107-206 100-179 (269)
76 KOG0989 Replication factor C, 98.4 1.7E-06 3.8E-11 71.3 8.4 132 89-232 31-169 (346)
77 TIGR00678 holB DNA polymerase 98.4 7.1E-06 1.5E-10 64.4 11.5 37 105-141 3-40 (188)
78 COG1222 RPT1 ATP-dependent 26S 98.4 4E-06 8.6E-11 70.6 10.4 124 92-235 149-303 (406)
79 PRK08116 hypothetical protein; 98.4 1.9E-06 4.1E-11 71.5 8.6 102 116-232 115-221 (268)
80 PRK14954 DNA polymerase III su 98.4 4E-06 8.7E-11 77.0 11.2 53 90-142 12-65 (620)
81 TIGR02881 spore_V_K stage V sp 98.4 1.7E-06 3.6E-11 71.7 7.9 26 115-140 42-67 (261)
82 PRK14950 DNA polymerase III su 98.4 5.6E-06 1.2E-10 76.1 12.1 53 89-141 11-64 (585)
83 TIGR03346 chaperone_ClpB ATP-d 98.3 3.1E-06 6.8E-11 81.0 10.5 50 92-141 171-220 (852)
84 PRK10536 hypothetical protein; 98.3 1.2E-05 2.5E-10 65.6 12.3 57 92-150 53-109 (262)
85 PRK14959 DNA polymerase III su 98.3 4.2E-06 9.2E-11 76.3 10.8 52 90-141 12-64 (624)
86 PRK14965 DNA polymerase III su 98.3 5E-06 1.1E-10 76.2 11.3 53 89-141 11-64 (576)
87 PRK14953 DNA polymerase III su 98.3 1E-05 2.3E-10 72.5 12.2 51 90-140 12-63 (486)
88 PF13177 DNA_pol3_delta2: DNA 98.3 1.8E-05 3.8E-10 60.7 11.5 119 98-233 1-143 (162)
89 PF00308 Bac_DnaA: Bacterial d 98.3 1.3E-05 2.8E-10 64.6 10.8 102 115-232 34-140 (219)
90 PRK07471 DNA polymerase III su 98.3 1.6E-05 3.5E-10 68.7 12.1 53 90-142 15-68 (365)
91 KOG0991 Replication factor C, 98.3 2.8E-06 6.1E-11 67.6 6.7 103 90-206 23-125 (333)
92 TIGR03689 pup_AAA proteasome A 98.3 4.4E-06 9.5E-11 74.9 8.6 51 92-142 180-243 (512)
93 PRK08451 DNA polymerase III su 98.3 1.7E-05 3.6E-10 71.5 12.4 51 90-140 10-61 (535)
94 PRK05642 DNA replication initi 98.3 4.3E-06 9.3E-11 68.1 7.9 91 115-232 45-140 (234)
95 PRK14948 DNA polymerase III su 98.2 1.6E-05 3.5E-10 73.3 12.3 136 91-231 13-160 (620)
96 PRK09112 DNA polymerase III su 98.2 6E-06 1.3E-10 71.1 9.0 52 90-141 19-71 (351)
97 PRK06305 DNA polymerase III su 98.2 1.3E-05 2.7E-10 71.4 11.3 52 90-141 13-65 (451)
98 PRK05563 DNA polymerase III su 98.2 2.1E-05 4.4E-10 71.9 12.8 54 88-141 10-64 (559)
99 PRK11034 clpA ATP-dependent Cl 98.2 3.2E-06 6.9E-11 79.4 7.7 102 93-206 185-290 (758)
100 PRK07133 DNA polymerase III su 98.2 1.2E-05 2.6E-10 74.5 11.2 52 90-141 14-66 (725)
101 PRK06526 transposase; Provisio 98.2 5.4E-06 1.2E-10 68.2 7.9 74 115-206 98-171 (254)
102 COG0470 HolB ATPase involved i 98.2 1.7E-05 3.7E-10 67.4 11.3 119 96-230 3-147 (325)
103 TIGR02640 gas_vesic_GvpN gas v 98.2 1.3E-05 2.7E-10 66.5 10.1 57 101-164 9-65 (262)
104 PRK14971 DNA polymerase III su 98.2 2.4E-05 5.2E-10 72.1 12.4 50 91-140 14-64 (614)
105 PRK08903 DnaA regulatory inact 98.2 5.4E-06 1.2E-10 67.1 7.3 61 93-155 17-80 (227)
106 CHL00181 cbbX CbbX; Provisiona 98.2 2.2E-05 4.7E-10 65.8 10.8 26 116-141 60-85 (287)
107 PRK12608 transcription termina 98.2 2.6E-05 5.5E-10 67.0 11.3 101 104-205 121-231 (380)
108 PF01695 IstB_IS21: IstB-like 98.2 6.1E-06 1.3E-10 64.3 6.9 74 115-206 47-120 (178)
109 COG1484 DnaC DNA replication p 98.2 2E-05 4.4E-10 64.8 10.2 84 104-206 96-179 (254)
110 PRK06647 DNA polymerase III su 98.1 3E-05 6.6E-10 70.7 11.9 53 89-141 11-64 (563)
111 COG0466 Lon ATP-dependent Lon 98.1 2.2E-05 4.7E-10 71.7 10.7 102 93-206 322-429 (782)
112 PRK09087 hypothetical protein; 98.1 7.5E-06 1.6E-10 66.3 7.2 26 114-139 43-68 (226)
113 PF02562 PhoH: PhoH-like prote 98.1 8.8E-06 1.9E-10 64.4 7.2 133 97-234 3-158 (205)
114 cd01120 RecA-like_NTPases RecA 98.1 2.6E-05 5.5E-10 59.1 9.6 40 117-158 1-40 (165)
115 COG1373 Predicted ATPase (AAA+ 98.1 1.5E-05 3.2E-10 69.9 9.1 114 98-236 21-135 (398)
116 PRK06835 DNA replication prote 98.1 0.00012 2.5E-09 62.5 14.3 100 116-231 184-288 (329)
117 TIGR02237 recomb_radB DNA repa 98.1 2E-05 4.4E-10 62.9 8.8 87 115-205 12-108 (209)
118 PRK09183 transposase/IS protei 98.1 8.7E-05 1.9E-09 61.3 12.6 27 116-142 103-129 (259)
119 TIGR00602 rad24 checkpoint pro 98.1 6.1E-06 1.3E-10 75.8 6.0 52 89-140 79-135 (637)
120 TIGR02880 cbbX_cfxQ probable R 98.1 2.6E-05 5.7E-10 65.3 9.4 27 116-142 59-85 (284)
121 TIGR03345 VI_ClpV1 type VI sec 98.1 1.4E-05 3.1E-10 76.2 8.7 107 93-206 565-680 (852)
122 PHA00729 NTP-binding motif con 98.1 3.2E-05 7E-10 62.0 9.1 35 106-140 8-42 (226)
123 PF04665 Pox_A32: Poxvirus A32 98.1 3E-05 6.6E-10 62.8 8.9 36 116-153 14-49 (241)
124 TIGR03499 FlhF flagellar biosy 98.0 0.00017 3.7E-09 60.3 13.7 86 115-203 194-281 (282)
125 PF05673 DUF815: Protein of un 98.0 7.1E-05 1.5E-09 60.5 10.8 119 90-236 23-155 (249)
126 PRK14087 dnaA chromosomal repl 98.0 1.2E-05 2.7E-10 71.5 7.1 103 115-231 141-248 (450)
127 TIGR02639 ClpA ATP-dependent C 98.0 3.3E-05 7.2E-10 73.0 10.3 103 94-206 454-565 (731)
128 PRK08118 topology modulation p 98.0 3.7E-06 8E-11 64.8 3.1 35 116-150 2-37 (167)
129 TIGR00763 lon ATP-dependent pr 98.0 5.9E-05 1.3E-09 71.7 11.7 49 94-142 320-374 (775)
130 PRK10865 protein disaggregatio 98.0 3.2E-05 7E-10 74.1 9.9 106 94-206 568-682 (857)
131 KOG2004 Mitochondrial ATP-depe 98.0 0.00013 2.9E-09 66.6 13.0 102 93-206 410-517 (906)
132 TIGR03346 chaperone_ClpB ATP-d 98.0 2.8E-05 6.1E-10 74.6 9.4 107 93-206 564-679 (852)
133 PRK04296 thymidine kinase; Pro 98.0 1.2E-05 2.6E-10 63.3 5.8 112 116-235 3-119 (190)
134 cd01123 Rad51_DMC1_radA Rad51_ 98.0 5.3E-05 1.1E-09 61.5 9.8 90 115-205 19-126 (235)
135 PRK14088 dnaA chromosomal repl 98.0 2.8E-05 6.1E-10 69.1 8.6 101 115-230 130-235 (440)
136 KOG0733 Nuclear AAA ATPase (VC 98.0 3.4E-05 7.4E-10 69.2 8.8 94 93-206 189-294 (802)
137 PTZ00454 26S protease regulato 98.0 3.1E-05 6.7E-10 67.8 8.6 93 93-205 144-249 (398)
138 TIGR01241 FtsH_fam ATP-depende 98.0 2.9E-05 6.2E-10 70.2 8.6 51 91-141 52-114 (495)
139 TIGR00362 DnaA chromosomal rep 98.0 1.9E-05 4.2E-10 69.5 7.3 101 115-231 136-241 (405)
140 CHL00176 ftsH cell division pr 98.0 5E-05 1.1E-09 70.2 10.2 49 93-141 182-242 (638)
141 PRK11034 clpA ATP-dependent Cl 98.0 2.7E-05 5.9E-10 73.2 8.6 103 94-206 458-569 (758)
142 PRK06921 hypothetical protein; 98.0 3.3E-05 7.2E-10 64.0 8.1 72 114-204 116-187 (266)
143 CHL00095 clpC Clp protease ATP 98.0 4.7E-05 1E-09 72.8 10.1 107 93-206 508-623 (821)
144 PRK07952 DNA replication prote 98.0 0.001 2.3E-08 54.3 16.6 89 102-206 84-174 (244)
145 PRK07261 topology modulation p 98.0 5E-05 1.1E-09 58.8 8.2 54 117-170 2-56 (171)
146 PRK08058 DNA polymerase III su 98.0 9.2E-05 2E-09 63.3 10.6 46 96-141 7-54 (329)
147 PRK12377 putative replication 98.0 0.00098 2.1E-08 54.6 16.1 74 115-205 101-174 (248)
148 TIGR02012 tigrfam_recA protein 97.9 6.1E-05 1.3E-09 63.8 9.1 84 115-205 55-144 (321)
149 PRK00149 dnaA chromosomal repl 97.9 3.4E-05 7.4E-10 68.9 7.9 76 115-206 148-223 (450)
150 COG3903 Predicted ATPase [Gene 97.9 2.6E-06 5.6E-11 73.0 0.7 115 115-235 14-130 (414)
151 KOG0734 AAA+-type ATPase conta 97.9 4.9E-05 1.1E-09 67.3 8.4 93 94-206 304-408 (752)
152 PRK08939 primosomal protein Dn 97.9 3E-05 6.5E-10 65.5 6.8 115 98-230 135-259 (306)
153 cd00983 recA RecA is a bacter 97.9 7.2E-05 1.6E-09 63.4 9.0 84 115-205 55-144 (325)
154 PF00448 SRP54: SRP54-type pro 97.9 0.00011 2.3E-09 58.2 9.4 56 115-172 1-57 (196)
155 KOG1969 DNA replication checkp 97.9 4.4E-05 9.5E-10 69.8 7.8 75 114-206 325-399 (877)
156 PHA02244 ATPase-like protein 97.9 0.00015 3.2E-09 62.3 10.6 36 104-141 110-145 (383)
157 PF08423 Rad51: Rad51; InterP 97.9 0.00017 3.6E-09 59.5 10.6 90 115-205 38-144 (256)
158 PTZ00361 26 proteosome regulat 97.9 2.2E-05 4.8E-10 69.3 5.7 50 93-142 182-244 (438)
159 PRK09354 recA recombinase A; P 97.9 0.0001 2.2E-09 63.0 9.4 84 115-205 60-149 (349)
160 PF14516 AAA_35: AAA-like doma 97.9 0.0005 1.1E-08 58.9 13.8 114 90-206 7-139 (331)
161 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00024 5.2E-09 57.9 11.3 111 114-231 20-170 (237)
162 KOG1514 Origin recognition com 97.9 0.00018 3.8E-09 65.6 11.2 135 92-229 394-546 (767)
163 cd01393 recA_like RecA is a b 97.9 0.0002 4.3E-09 57.8 10.7 90 115-205 19-125 (226)
164 PRK12727 flagellar biosynthesi 97.8 0.00049 1.1E-08 61.8 13.5 39 115-153 350-388 (559)
165 COG0542 clpA ATP-binding subun 97.8 0.001 2.2E-08 62.2 15.7 107 93-206 490-605 (786)
166 KOG0744 AAA+-type ATPase [Post 97.8 3.5E-05 7.6E-10 64.2 5.5 83 115-206 177-262 (423)
167 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.4E-10 57.0 3.7 24 117-140 1-24 (121)
168 PRK09361 radB DNA repair and r 97.8 0.00012 2.6E-09 59.2 8.5 85 115-204 23-117 (225)
169 TIGR02238 recomb_DMC1 meiotic 97.8 0.00015 3.3E-09 61.4 9.4 90 115-205 96-202 (313)
170 CHL00195 ycf46 Ycf46; Provisio 97.8 0.0001 2.2E-09 66.1 8.6 49 94-142 228-286 (489)
171 PRK14086 dnaA chromosomal repl 97.8 7.9E-05 1.7E-09 68.0 8.0 101 115-231 314-419 (617)
172 PRK07399 DNA polymerase III su 97.8 0.00038 8.2E-09 59.1 11.6 47 94-140 4-51 (314)
173 cd01131 PilT Pilus retraction 97.8 5.3E-05 1.1E-09 60.0 6.0 111 116-235 2-112 (198)
174 PLN00020 ribulose bisphosphate 97.8 0.0003 6.4E-09 60.3 10.3 30 113-142 146-175 (413)
175 KOG0728 26S proteasome regulat 97.8 0.0073 1.6E-07 49.0 17.5 92 95-206 147-252 (404)
176 COG0542 clpA ATP-binding subun 97.8 5.4E-05 1.2E-09 70.5 6.2 103 92-206 168-274 (786)
177 cd01394 radB RadB. The archaea 97.7 0.00034 7.3E-09 56.2 10.2 86 115-205 19-114 (218)
178 COG2255 RuvB Holliday junction 97.7 5.2E-05 1.1E-09 62.2 5.2 53 90-142 22-79 (332)
179 COG0593 DnaA ATPase involved i 97.7 0.00047 1E-08 60.0 11.5 102 114-232 112-218 (408)
180 PRK10787 DNA-binding ATP-depen 97.7 0.00021 4.5E-09 67.8 10.0 49 93-141 321-375 (784)
181 PRK12422 chromosomal replicati 97.7 0.0001 2.2E-09 65.6 7.4 99 115-231 141-244 (445)
182 smart00763 AAA_PrkA PrkA AAA d 97.7 5.8E-05 1.3E-09 64.6 5.6 47 95-141 52-104 (361)
183 PRK06696 uridine kinase; Valid 97.7 6.6E-05 1.4E-09 60.6 5.7 45 98-142 2-49 (223)
184 TIGR02858 spore_III_AA stage I 97.7 0.00032 7E-09 58.2 9.8 113 113-235 109-232 (270)
185 cd03115 SRP The signal recogni 97.7 0.00034 7.3E-09 54.0 9.4 37 117-155 2-38 (173)
186 PRK08533 flagellar accessory p 97.7 0.00037 8E-09 56.6 9.9 87 115-206 24-129 (230)
187 COG1223 Predicted ATPase (AAA+ 97.7 0.00011 2.3E-09 59.7 6.5 94 93-206 120-222 (368)
188 TIGR01243 CDC48 AAA family ATP 97.7 9.5E-05 2E-09 70.0 7.4 49 93-141 177-238 (733)
189 TIGR02236 recomb_radA DNA repa 97.7 0.00033 7.1E-09 59.5 10.0 90 115-205 95-203 (310)
190 PRK14722 flhF flagellar biosyn 97.7 0.00028 6.1E-09 61.0 9.6 60 115-174 137-197 (374)
191 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.00026 5.6E-09 55.2 8.6 24 117-140 1-24 (183)
192 PRK04301 radA DNA repair and r 97.7 0.00036 7.7E-09 59.5 10.1 90 115-205 102-209 (317)
193 PRK04328 hypothetical protein; 97.7 0.00028 6.1E-09 58.0 9.1 111 114-231 22-172 (249)
194 PLN03187 meiotic recombination 97.7 0.00035 7.6E-09 59.9 9.8 90 115-205 126-232 (344)
195 PF00154 RecA: recA bacterial 97.7 0.00065 1.4E-08 57.5 11.1 85 115-206 53-143 (322)
196 PRK05707 DNA polymerase III su 97.7 0.00062 1.3E-08 58.2 11.1 27 115-141 22-48 (328)
197 PRK06067 flagellar accessory p 97.7 0.00058 1.2E-08 55.5 10.5 86 114-204 24-130 (234)
198 PF00158 Sigma54_activat: Sigm 97.7 0.00046 9.9E-09 53.2 9.2 59 96-156 1-61 (168)
199 PF07728 AAA_5: AAA domain (dy 97.6 0.00014 3E-09 54.1 6.0 42 118-164 2-43 (139)
200 PTZ00035 Rad51 protein; Provis 97.6 0.00087 1.9E-08 57.5 11.6 90 115-205 118-224 (337)
201 PRK00771 signal recognition pa 97.6 0.00058 1.3E-08 60.4 10.5 87 114-204 94-185 (437)
202 cd01121 Sms Sms (bacterial rad 97.6 0.00047 1E-08 59.9 9.7 86 115-205 82-169 (372)
203 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0002 4.4E-09 64.4 7.5 102 114-235 544-660 (802)
204 KOG0741 AAA+-type ATPase [Post 97.6 0.00021 4.6E-09 63.3 7.5 104 114-241 537-659 (744)
205 PF14532 Sigma54_activ_2: Sigm 97.6 3.5E-05 7.7E-10 57.3 2.3 44 97-140 1-46 (138)
206 KOG0729 26S proteasome regulat 97.6 0.00042 9.2E-09 56.5 8.5 94 92-205 175-281 (435)
207 PRK05541 adenylylsulfate kinas 97.6 0.00024 5.1E-09 55.1 7.0 36 114-151 6-41 (176)
208 TIGR02239 recomb_RAD51 DNA rep 97.6 0.00052 1.1E-08 58.4 9.5 90 115-205 96-202 (316)
209 KOG0739 AAA+-type ATPase [Post 97.6 0.00039 8.5E-09 57.6 8.3 93 94-206 133-237 (439)
210 cd01124 KaiC KaiC is a circadi 97.6 0.00033 7.3E-09 54.6 7.8 44 118-165 2-45 (187)
211 KOG0736 Peroxisome assembly fa 97.6 0.00041 8.8E-09 64.0 9.1 93 94-206 672-776 (953)
212 PRK13531 regulatory ATPase Rav 97.6 0.00014 3.1E-09 64.5 5.9 50 94-145 20-69 (498)
213 PRK08233 hypothetical protein; 97.6 0.00041 8.9E-09 53.8 7.9 26 115-140 3-28 (182)
214 PRK15429 formate hydrogenlyase 97.5 0.0018 4E-08 60.9 13.3 61 94-156 376-438 (686)
215 COG0467 RAD55 RecA-superfamily 97.5 0.00098 2.1E-08 55.1 10.3 87 114-205 22-135 (260)
216 PLN03186 DNA repair protein RA 97.5 0.00055 1.2E-08 58.7 8.9 90 115-205 123-229 (342)
217 TIGR02655 circ_KaiC circadian 97.5 0.00094 2E-08 60.2 10.8 114 114-234 262-401 (484)
218 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00014 3.1E-09 58.3 5.0 116 115-237 29-159 (213)
219 COG2884 FtsE Predicted ATPase 97.5 0.0011 2.4E-08 51.4 9.5 29 114-142 27-55 (223)
220 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00065 1.4E-08 56.2 9.0 90 114-205 35-142 (259)
221 TIGR01650 PD_CobS cobaltochela 97.5 0.00042 9.1E-09 58.7 7.9 67 90-163 41-107 (327)
222 KOG0727 26S proteasome regulat 97.5 0.0012 2.6E-08 53.5 9.9 94 93-206 154-260 (408)
223 TIGR00959 ffh signal recogniti 97.5 0.0011 2.5E-08 58.4 10.7 40 114-154 98-137 (428)
224 COG4608 AppF ABC-type oligopep 97.5 0.00085 1.8E-08 54.9 9.0 120 114-237 38-175 (268)
225 PRK14974 cell division protein 97.5 0.0025 5.4E-08 54.6 12.3 58 114-173 139-197 (336)
226 COG1618 Predicted nucleotide k 97.5 0.00017 3.6E-09 54.4 4.4 28 116-143 6-33 (179)
227 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0022 4.7E-08 48.8 10.5 115 116-233 3-139 (159)
228 PF13086 AAA_11: AAA domain; P 97.5 0.00029 6.3E-09 56.6 6.2 64 103-168 7-75 (236)
229 PRK10867 signal recognition pa 97.5 0.00099 2.1E-08 58.9 9.8 40 114-154 99-138 (433)
230 KOG0738 AAA+-type ATPase [Post 97.5 0.0002 4.4E-09 61.2 5.3 28 115-142 245-272 (491)
231 PRK11823 DNA repair protein Ra 97.5 0.00086 1.9E-08 59.7 9.6 86 115-205 80-167 (446)
232 TIGR01243 CDC48 AAA family ATP 97.5 0.0006 1.3E-08 64.6 9.1 94 93-206 452-558 (733)
233 PRK06871 DNA polymerase III su 97.5 0.0025 5.4E-08 54.3 11.9 125 101-232 9-147 (325)
234 PRK08769 DNA polymerase III su 97.5 0.0022 4.7E-08 54.5 11.4 41 101-141 11-52 (319)
235 PRK09270 nucleoside triphospha 97.5 0.0014 3.1E-08 53.0 10.0 30 113-142 31-60 (229)
236 TIGR00064 ftsY signal recognit 97.5 0.0017 3.7E-08 54.0 10.6 40 114-155 71-110 (272)
237 PRK06547 hypothetical protein; 97.4 0.00024 5.2E-09 55.0 5.1 35 106-140 6-40 (172)
238 KOG0731 AAA+-type ATPase conta 97.4 0.00042 9E-09 64.4 7.2 94 93-206 310-415 (774)
239 COG3899 Predicted ATPase [Gene 97.4 0.00099 2.1E-08 63.9 10.0 48 95-142 1-51 (849)
240 COG1875 NYN ribonuclease and A 97.4 0.0022 4.9E-08 54.6 10.9 45 93-137 223-267 (436)
241 COG0563 Adk Adenylate kinase a 97.4 0.00041 8.8E-09 54.0 6.1 25 117-141 2-26 (178)
242 PRK13765 ATP-dependent proteas 97.4 0.00035 7.5E-09 64.6 6.6 79 90-172 27-105 (637)
243 PRK11608 pspF phage shock prot 97.4 0.00057 1.2E-08 58.4 7.5 63 93-157 5-69 (326)
244 PF13481 AAA_25: AAA domain; P 97.4 0.0017 3.7E-08 50.9 9.7 89 116-206 33-153 (193)
245 COG1102 Cmk Cytidylate kinase 97.4 0.00035 7.7E-09 52.6 5.2 44 117-173 2-45 (179)
246 TIGR00708 cobA cob(I)alamin ad 97.4 0.0017 3.7E-08 50.0 9.1 117 115-232 5-140 (173)
247 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.5E-09 52.5 3.4 22 118-139 1-22 (129)
248 cd01133 F1-ATPase_beta F1 ATP 97.4 0.0026 5.7E-08 52.7 10.8 91 115-206 69-175 (274)
249 PRK12723 flagellar biosynthesi 97.4 0.0012 2.6E-08 57.5 9.3 60 114-173 173-235 (388)
250 COG1066 Sms Predicted ATP-depe 97.4 0.0012 2.6E-08 57.0 9.0 86 115-206 93-180 (456)
251 COG4088 Predicted nucleotide k 97.4 0.00011 2.4E-09 57.6 2.5 27 116-142 2-28 (261)
252 PRK11889 flhF flagellar biosyn 97.4 0.0016 3.4E-08 56.6 9.6 39 114-154 240-278 (436)
253 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0025 5.5E-08 51.5 10.5 113 115-232 20-166 (229)
254 COG2812 DnaX DNA polymerase II 97.4 0.00035 7.5E-09 62.6 5.7 139 89-234 11-162 (515)
255 KOG0735 AAA+-type ATPase [Post 97.4 0.00099 2.2E-08 61.1 8.6 75 114-206 430-506 (952)
256 PRK05703 flhF flagellar biosyn 97.4 0.0028 6.1E-08 56.1 11.4 40 115-155 221-261 (424)
257 cd01125 repA Hexameric Replica 97.4 0.0011 2.4E-08 54.1 8.3 118 117-234 3-161 (239)
258 PRK09519 recA DNA recombinatio 97.4 0.0012 2.6E-08 62.1 9.4 84 115-205 60-149 (790)
259 PF06745 KaiC: KaiC; InterPro 97.4 0.00058 1.3E-08 55.2 6.6 87 114-205 18-126 (226)
260 COG0468 RecA RecA/RadA recombi 97.4 0.0014 2.9E-08 54.5 8.7 87 115-205 60-152 (279)
261 TIGR02902 spore_lonB ATP-depen 97.3 0.00044 9.6E-09 62.9 6.4 47 93-139 64-110 (531)
262 PRK12726 flagellar biosynthesi 97.3 0.002 4.4E-08 55.7 9.9 89 114-205 205-296 (407)
263 COG0488 Uup ATPase components 97.3 0.016 3.4E-07 52.7 16.1 121 114-236 347-500 (530)
264 PF13671 AAA_33: AAA domain; P 97.3 0.0002 4.3E-09 53.3 3.4 24 117-140 1-24 (143)
265 PF00485 PRK: Phosphoribulokin 97.3 0.00022 4.8E-09 56.3 3.8 26 117-142 1-26 (194)
266 KOG2228 Origin recognition com 97.3 0.0027 6E-08 53.5 10.3 141 92-234 22-184 (408)
267 cd00544 CobU Adenosylcobinamid 97.3 0.0013 2.9E-08 50.7 8.0 81 118-204 2-83 (169)
268 PRK07667 uridine kinase; Provi 97.3 0.00074 1.6E-08 53.3 6.7 28 114-141 16-43 (193)
269 cd03223 ABCD_peroxisomal_ALDP 97.3 0.0016 3.5E-08 50.0 8.4 114 115-235 27-151 (166)
270 COG0714 MoxR-like ATPases [Gen 97.3 0.00071 1.5E-08 57.9 7.1 65 95-166 25-89 (329)
271 TIGR00764 lon_rel lon-related 97.3 0.00082 1.8E-08 62.1 7.9 77 91-171 15-91 (608)
272 cd02025 PanK Pantothenate kina 97.3 0.0018 3.9E-08 52.2 9.0 25 117-141 1-25 (220)
273 PRK15455 PrkA family serine pr 97.3 0.00037 8.1E-09 63.0 5.4 49 94-142 76-130 (644)
274 cd03247 ABCC_cytochrome_bd The 97.3 0.0012 2.7E-08 51.2 7.8 115 115-236 28-161 (178)
275 TIGR01420 pilT_fam pilus retra 97.3 0.00088 1.9E-08 57.7 7.5 112 114-235 121-233 (343)
276 PF07724 AAA_2: AAA domain (Cd 97.3 0.00018 3.9E-09 55.6 2.9 42 115-158 3-45 (171)
277 PF08433 KTI12: Chromatin asso 97.3 0.00064 1.4E-08 56.4 6.3 27 116-142 2-28 (270)
278 TIGR01425 SRP54_euk signal rec 97.3 0.0024 5.2E-08 56.3 10.1 38 114-153 99-136 (429)
279 PRK12724 flagellar biosynthesi 97.3 0.0012 2.6E-08 57.9 8.2 25 115-139 223-247 (432)
280 TIGR00416 sms DNA repair prote 97.3 0.0016 3.5E-08 58.1 9.2 86 115-205 94-181 (454)
281 PF13245 AAA_19: Part of AAA d 97.3 0.00085 1.8E-08 44.5 5.7 26 114-139 9-34 (76)
282 PRK06851 hypothetical protein; 97.3 0.0045 9.6E-08 53.5 11.5 42 114-156 213-254 (367)
283 KOG0743 AAA+-type ATPase [Post 97.3 0.011 2.4E-07 51.8 13.8 41 100-140 211-260 (457)
284 PRK14531 adenylate kinase; Pro 97.3 0.0012 2.7E-08 51.5 7.5 25 116-140 3-27 (183)
285 KOG0730 AAA+-type ATPase [Post 97.3 0.0011 2.4E-08 60.2 7.9 74 113-206 466-539 (693)
286 COG1419 FlhF Flagellar GTP-bin 97.3 0.0045 9.8E-08 53.6 11.3 56 100-155 184-243 (407)
287 PF10443 RNA12: RNA12 protein; 97.3 0.0012 2.5E-08 57.6 7.7 67 99-171 1-71 (431)
288 TIGR00554 panK_bact pantothena 97.3 0.0023 5E-08 53.6 9.3 28 113-140 60-87 (290)
289 PRK05342 clpX ATP-dependent pr 97.3 0.0009 2E-08 58.9 7.1 48 94-141 71-134 (412)
290 PRK06762 hypothetical protein; 97.3 0.0003 6.6E-09 53.9 3.7 25 115-139 2-26 (166)
291 PF05970 PIF1: PIF1-like helic 97.3 0.0009 2E-08 58.1 7.0 40 103-142 10-49 (364)
292 cd03214 ABC_Iron-Siderophores_ 97.2 0.0021 4.6E-08 50.0 8.4 117 115-235 25-161 (180)
293 PF03308 ArgK: ArgK protein; 97.2 0.00077 1.7E-08 54.9 5.9 60 102-161 14-75 (266)
294 PF03215 Rad17: Rad17 cell cyc 97.2 0.00056 1.2E-08 61.8 5.7 58 91-152 16-78 (519)
295 PRK07993 DNA polymerase III su 97.2 0.0054 1.2E-07 52.6 11.4 126 101-233 9-149 (334)
296 PRK05022 anaerobic nitric oxid 97.2 0.0011 2.3E-08 60.3 7.5 63 93-157 186-250 (509)
297 cd00984 DnaB_C DnaB helicase C 97.2 0.005 1.1E-07 50.1 10.9 40 115-155 13-52 (242)
298 PF00910 RNA_helicase: RNA hel 97.2 0.00027 5.8E-09 50.2 2.9 25 118-142 1-25 (107)
299 TIGR00390 hslU ATP-dependent p 97.2 0.0013 2.7E-08 57.6 7.5 49 94-142 12-74 (441)
300 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00085 1.8E-08 55.1 6.3 26 117-142 1-26 (249)
301 cd02019 NK Nucleoside/nucleoti 97.2 0.00036 7.7E-09 45.4 3.2 23 117-139 1-23 (69)
302 PRK10463 hydrogenase nickel in 97.2 0.0027 5.9E-08 53.0 9.2 37 106-142 95-131 (290)
303 KOG0735 AAA+-type ATPase [Post 97.2 0.00077 1.7E-08 61.8 6.3 72 115-206 701-772 (952)
304 PTZ00301 uridine kinase; Provi 97.2 0.00036 7.8E-09 55.7 3.8 26 115-140 3-28 (210)
305 PRK05480 uridine/cytidine kina 97.2 0.00039 8.4E-09 55.5 4.1 27 113-139 4-30 (209)
306 PRK05917 DNA polymerase III su 97.2 0.0088 1.9E-07 50.0 12.0 113 102-233 5-136 (290)
307 PRK06090 DNA polymerase III su 97.2 0.0083 1.8E-07 51.0 12.1 125 101-233 10-149 (319)
308 PRK06964 DNA polymerase III su 97.2 0.0096 2.1E-07 51.1 12.4 37 104-141 11-47 (342)
309 PRK03839 putative kinase; Prov 97.2 0.00038 8.2E-09 54.2 3.6 25 117-141 2-26 (180)
310 COG1703 ArgK Putative periplas 97.2 0.00071 1.5E-08 56.1 5.2 61 104-164 38-100 (323)
311 cd03216 ABC_Carb_Monos_I This 97.2 0.00057 1.2E-08 52.4 4.4 114 115-235 26-145 (163)
312 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00043 9.3E-09 54.0 3.8 25 115-139 3-27 (188)
313 TIGR02974 phageshock_pspF psp 97.2 0.0011 2.5E-08 56.6 6.6 59 96-156 1-61 (329)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0017 3.7E-08 48.6 6.9 103 115-236 26-131 (144)
315 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.00032 6.9E-09 56.5 3.0 116 114-236 30-158 (222)
316 PF00006 ATP-synt_ab: ATP synt 97.2 0.002 4.4E-08 51.6 7.6 86 116-205 16-116 (215)
317 KOG0726 26S proteasome regulat 97.2 0.0033 7.3E-08 52.1 8.8 52 91-142 182-246 (440)
318 KOG0651 26S proteasome regulat 97.2 0.0013 2.8E-08 54.8 6.5 102 114-235 165-284 (388)
319 PF01583 APS_kinase: Adenylyls 97.1 0.0009 2E-08 50.7 5.2 34 116-151 3-36 (156)
320 cd03238 ABC_UvrA The excision 97.1 0.002 4.4E-08 50.0 7.3 112 115-236 21-153 (176)
321 TIGR00235 udk uridine kinase. 97.1 0.0005 1.1E-08 54.8 4.0 28 113-140 4-31 (207)
322 COG3640 CooC CO dehydrogenase 97.1 0.0012 2.6E-08 52.9 6.0 42 117-159 2-43 (255)
323 PF06309 Torsin: Torsin; Inte 97.1 0.0071 1.5E-07 43.9 9.5 46 94-139 25-77 (127)
324 cd03283 ABC_MutS-like MutS-lik 97.1 0.00092 2E-08 53.0 5.4 24 116-139 26-49 (199)
325 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0016 3.4E-08 54.0 7.0 120 102-235 68-187 (264)
326 cd01122 GP4d_helicase GP4d_hel 97.1 0.0071 1.5E-07 50.2 11.0 40 115-155 30-69 (271)
327 KOG3347 Predicted nucleotide k 97.1 0.00046 1E-08 51.3 3.3 35 115-156 7-41 (176)
328 COG2607 Predicted ATPase (AAA+ 97.1 0.0069 1.5E-07 48.8 10.1 51 92-142 58-112 (287)
329 PRK14721 flhF flagellar biosyn 97.1 0.0062 1.3E-07 53.6 10.8 27 114-140 190-216 (420)
330 PRK08699 DNA polymerase III su 97.1 0.01 2.2E-07 50.8 11.8 27 114-140 20-46 (325)
331 PLN02200 adenylate kinase fami 97.1 0.0018 4E-08 52.6 7.1 26 115-140 43-68 (234)
332 PRK06995 flhF flagellar biosyn 97.1 0.0044 9.6E-08 55.5 10.0 41 115-155 256-296 (484)
333 TIGR01817 nifA Nif-specific re 97.1 0.0013 2.8E-08 60.1 6.8 63 92-156 194-258 (534)
334 PTZ00088 adenylate kinase 1; P 97.1 0.00059 1.3E-08 55.3 4.1 24 117-140 8-31 (229)
335 cd02027 APSK Adenosine 5'-phos 97.1 0.0058 1.3E-07 46.1 9.3 25 117-141 1-25 (149)
336 PRK00279 adk adenylate kinase; 97.1 0.0033 7.2E-08 50.4 8.4 24 117-140 2-25 (215)
337 PRK14529 adenylate kinase; Pro 97.1 0.0032 7E-08 50.7 8.2 84 118-206 3-88 (223)
338 PRK04040 adenylate kinase; Pro 97.1 0.00053 1.2E-08 53.8 3.6 25 116-140 3-27 (188)
339 KOG0652 26S proteasome regulat 97.1 0.0024 5.3E-08 52.0 7.4 51 92-142 169-232 (424)
340 TIGR02655 circ_KaiC circadian 97.1 0.0041 9E-08 56.1 9.7 114 114-234 20-169 (484)
341 PRK09435 membrane ATPase/prote 97.1 0.0079 1.7E-07 51.4 10.9 39 104-142 43-83 (332)
342 PRK05439 pantothenate kinase; 97.1 0.0055 1.2E-07 51.8 9.8 29 113-141 84-112 (311)
343 cd03228 ABCC_MRP_Like The MRP 97.1 0.0027 5.8E-08 49.0 7.4 28 114-141 27-54 (171)
344 PTZ00494 tuzin-like protein; P 97.1 0.12 2.5E-06 45.9 17.8 78 90-175 367-447 (664)
345 cd03246 ABCC_Protease_Secretio 97.1 0.0018 3.9E-08 50.0 6.4 26 115-140 28-53 (173)
346 PRK01184 hypothetical protein; 97.1 0.0062 1.4E-07 47.4 9.5 22 116-138 2-23 (184)
347 PRK13768 GTPase; Provisional 97.1 0.0043 9.3E-08 51.1 8.9 27 116-142 3-29 (253)
348 PRK00131 aroK shikimate kinase 97.1 0.00066 1.4E-08 52.2 3.9 26 115-140 4-29 (175)
349 COG0464 SpoVK ATPases of the A 97.1 0.0014 3E-08 59.3 6.5 73 114-206 275-347 (494)
350 cd03243 ABC_MutS_homologs The 97.1 0.00056 1.2E-08 54.3 3.5 23 116-138 30-52 (202)
351 cd01135 V_A-ATPase_B V/A-type 97.0 0.008 1.7E-07 49.8 10.2 92 115-206 69-178 (276)
352 PRK14723 flhF flagellar biosyn 97.0 0.0092 2E-07 56.2 11.7 60 115-174 185-245 (767)
353 PRK09302 circadian clock prote 97.0 0.0088 1.9E-07 54.4 11.5 86 115-205 273-374 (509)
354 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0038 8.3E-08 48.5 7.9 27 115-141 25-51 (177)
355 TIGR00750 lao LAO/AO transport 97.0 0.0037 8E-08 52.8 8.4 38 105-142 22-61 (300)
356 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0016 3.4E-08 48.1 5.3 28 115-142 22-49 (133)
357 COG1428 Deoxynucleoside kinase 97.0 0.0017 3.6E-08 51.3 5.7 28 115-142 4-31 (216)
358 PRK10733 hflB ATP-dependent me 97.0 0.0021 4.6E-08 59.9 7.4 27 116-142 186-212 (644)
359 PRK00889 adenylylsulfate kinas 97.0 0.0014 3E-08 50.7 5.3 29 114-142 3-31 (175)
360 PRK00625 shikimate kinase; Pro 97.0 0.00065 1.4E-08 52.6 3.4 25 117-141 2-26 (173)
361 TIGR00382 clpX endopeptidase C 97.0 0.0033 7.1E-08 55.3 8.1 49 93-141 76-142 (413)
362 PRK05800 cobU adenosylcobinami 97.0 0.0026 5.7E-08 49.1 6.6 81 116-204 2-86 (170)
363 PHA02774 E1; Provisional 97.0 0.0023 5.1E-08 57.9 7.1 51 101-155 419-470 (613)
364 PF03969 AFG1_ATPase: AFG1-lik 97.0 0.001 2.2E-08 57.6 4.7 79 114-206 61-139 (362)
365 KOG1532 GTPase XAB1, interacts 97.0 0.0011 2.3E-08 54.3 4.4 61 114-176 18-89 (366)
366 smart00534 MUTSac ATPase domai 97.0 0.00048 1E-08 53.9 2.4 21 117-137 1-21 (185)
367 PF12775 AAA_7: P-loop contain 97.0 0.00073 1.6E-08 56.2 3.5 53 106-161 25-77 (272)
368 TIGR01287 nifH nitrogenase iro 97.0 0.0016 3.4E-08 54.3 5.5 39 116-156 1-39 (275)
369 cd00046 DEXDc DEAD-like helica 97.0 0.0022 4.8E-08 46.6 5.8 36 117-152 2-37 (144)
370 COG0572 Udk Uridine kinase [Nu 97.0 0.00093 2E-08 53.2 3.8 29 114-142 7-35 (218)
371 PF07726 AAA_3: ATPase family 97.0 0.00045 9.7E-09 50.3 1.9 25 118-142 2-26 (131)
372 cd00227 CPT Chloramphenicol (C 96.9 0.00094 2E-08 51.7 3.8 25 116-140 3-27 (175)
373 PRK13407 bchI magnesium chelat 96.9 0.0013 2.8E-08 56.2 4.9 49 91-139 5-53 (334)
374 TIGR01351 adk adenylate kinase 96.9 0.0043 9.2E-08 49.6 7.6 23 118-140 2-24 (210)
375 TIGR02322 phosphon_PhnN phosph 96.9 0.00086 1.9E-08 52.0 3.5 25 116-140 2-26 (179)
376 PRK06217 hypothetical protein; 96.9 0.00077 1.7E-08 52.6 3.2 34 117-151 3-38 (183)
377 PRK10875 recD exonuclease V su 96.9 0.0032 6.9E-08 58.2 7.7 53 115-167 167-220 (615)
378 PRK12597 F0F1 ATP synthase sub 96.9 0.0083 1.8E-07 53.4 9.9 90 115-205 143-248 (461)
379 PF03205 MobB: Molybdopterin g 96.9 0.002 4.3E-08 48.1 5.3 39 116-155 1-39 (140)
380 cd02028 UMPK_like Uridine mono 96.9 0.0011 2.5E-08 51.5 4.1 25 117-141 1-25 (179)
381 PF02374 ArsA_ATPase: Anion-tr 96.9 0.002 4.3E-08 54.6 5.7 41 116-158 2-42 (305)
382 PRK14527 adenylate kinase; Pro 96.9 0.0011 2.4E-08 52.1 4.0 28 114-141 5-32 (191)
383 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0079 1.7E-07 48.4 9.0 47 115-165 16-62 (224)
384 TIGR03305 alt_F1F0_F1_bet alte 96.9 0.009 2E-07 52.9 9.9 91 115-206 138-244 (449)
385 PRK13947 shikimate kinase; Pro 96.9 0.00088 1.9E-08 51.5 3.3 26 117-142 3-28 (171)
386 PF03266 NTPase_1: NTPase; In 96.9 0.0009 2E-08 51.6 3.3 24 118-141 2-25 (168)
387 TIGR02030 BchI-ChlI magnesium 96.9 0.0021 4.5E-08 55.1 5.8 48 92-139 2-49 (337)
388 COG3854 SpoIIIAA ncharacterize 96.9 0.0047 1E-07 49.5 7.3 120 106-234 128-255 (308)
389 cd02021 GntK Gluconate kinase 96.9 0.00084 1.8E-08 50.5 3.0 23 117-139 1-23 (150)
390 KOG0927 Predicted transporter 96.9 0.053 1.1E-06 48.7 14.4 119 115-235 416-569 (614)
391 PF07693 KAP_NTPase: KAP famil 96.9 0.0061 1.3E-07 51.8 8.7 71 100-170 2-80 (325)
392 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0062 1.3E-07 47.0 7.9 26 115-140 26-51 (173)
393 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0034 7.5E-08 47.6 6.4 114 115-236 25-144 (157)
394 KOG1051 Chaperone HSP104 and r 96.9 0.0087 1.9E-07 57.0 10.1 101 96-206 564-672 (898)
395 cd02023 UMPK Uridine monophosp 96.9 0.00088 1.9E-08 52.9 3.2 23 117-139 1-23 (198)
396 cd02020 CMPK Cytidine monophos 96.9 0.00093 2E-08 49.8 3.2 25 117-141 1-25 (147)
397 PRK10416 signal recognition pa 96.9 0.016 3.4E-07 49.4 10.9 29 114-142 113-141 (318)
398 PRK10820 DNA-binding transcrip 96.9 0.0033 7.1E-08 57.2 7.1 63 93-157 203-267 (520)
399 PLN02165 adenylate isopentenyl 96.9 0.0017 3.7E-08 55.2 4.9 30 111-140 39-68 (334)
400 TIGR00041 DTMP_kinase thymidyl 96.9 0.0043 9.3E-08 48.7 7.0 27 116-142 4-30 (195)
401 PRK14530 adenylate kinase; Pro 96.9 0.0011 2.4E-08 53.2 3.6 25 116-140 4-28 (215)
402 COG0003 ArsA Predicted ATPase 96.9 0.0028 6.1E-08 53.8 6.2 48 115-164 2-49 (322)
403 CHL00081 chlI Mg-protoporyphyr 96.8 0.0019 4.1E-08 55.5 5.1 50 91-140 14-63 (350)
404 COG0465 HflB ATP-dependent Zn 96.8 0.0034 7.3E-08 57.2 6.9 52 91-142 147-210 (596)
405 PRK06620 hypothetical protein; 96.8 0.00097 2.1E-08 53.5 3.2 24 116-139 45-68 (214)
406 PRK09280 F0F1 ATP synthase sub 96.8 0.015 3.2E-07 51.8 10.7 91 115-206 144-250 (463)
407 cd01672 TMPK Thymidine monopho 96.8 0.0048 1E-07 48.3 7.0 26 117-142 2-27 (200)
408 PF13604 AAA_30: AAA domain; P 96.8 0.0034 7.4E-08 49.6 6.1 37 106-142 9-45 (196)
409 PRK05748 replicative DNA helic 96.8 0.23 4.9E-06 44.5 18.4 50 115-167 203-252 (448)
410 PRK05986 cob(I)alamin adenolsy 96.8 0.0044 9.6E-08 48.5 6.5 117 115-232 22-158 (191)
411 cd02024 NRK1 Nicotinamide ribo 96.8 0.001 2.2E-08 52.1 3.0 23 117-139 1-23 (187)
412 cd02040 NifH NifH gene encodes 96.8 0.0028 6.1E-08 52.5 5.9 41 116-158 2-42 (270)
413 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 50.8 3.5 25 117-141 3-27 (169)
414 PLN02924 thymidylate kinase 96.8 0.0088 1.9E-07 48.2 8.5 53 115-168 16-68 (220)
415 PF03029 ATP_bind_1: Conserved 96.8 0.0018 3.8E-08 52.8 4.5 35 120-156 1-35 (238)
416 COG1224 TIP49 DNA helicase TIP 96.8 0.0033 7.1E-08 53.4 6.0 55 91-145 36-95 (450)
417 TIGR01313 therm_gnt_kin carboh 96.8 0.00094 2E-08 51.0 2.7 23 118-140 1-23 (163)
418 cd02034 CooC The accessory pro 96.8 0.0098 2.1E-07 42.8 7.8 36 118-155 2-37 (116)
419 PF06068 TIP49: TIP49 C-termin 96.8 0.0024 5.1E-08 54.8 5.1 53 93-145 23-80 (398)
420 PRK05201 hslU ATP-dependent pr 96.8 0.005 1.1E-07 54.0 7.2 50 93-142 14-77 (443)
421 TIGR01448 recD_rel helicase, p 96.8 0.0085 1.8E-07 56.7 9.3 40 116-156 339-378 (720)
422 PRK03846 adenylylsulfate kinas 96.8 0.0027 5.9E-08 50.2 5.2 29 113-141 22-50 (198)
423 cd00464 SK Shikimate kinase (S 96.8 0.0014 3E-08 49.3 3.4 23 118-140 2-24 (154)
424 PRK13230 nitrogenase reductase 96.8 0.003 6.6E-08 52.7 5.7 39 116-156 2-40 (279)
425 PRK13975 thymidylate kinase; P 96.8 0.0015 3.2E-08 51.4 3.7 26 116-141 3-28 (196)
426 PRK00300 gmk guanylate kinase; 96.8 0.0014 3.1E-08 51.9 3.6 26 115-140 5-30 (205)
427 PF08477 Miro: Miro-like prote 96.8 0.0014 3.1E-08 46.9 3.3 23 118-140 2-24 (119)
428 PRK10751 molybdopterin-guanine 96.8 0.0025 5.3E-08 49.2 4.7 29 114-142 5-33 (173)
429 PRK12678 transcription termina 96.8 0.0081 1.8E-07 54.5 8.5 90 115-205 416-514 (672)
430 PF00625 Guanylate_kin: Guanyl 96.7 0.0022 4.7E-08 50.0 4.5 35 115-151 2-36 (183)
431 TIGR03263 guanyl_kin guanylate 96.7 0.0012 2.7E-08 51.2 3.0 24 116-139 2-25 (180)
432 PRK05973 replicative DNA helic 96.7 0.0035 7.6E-08 50.9 5.6 112 115-234 64-195 (237)
433 COG0541 Ffh Signal recognition 96.7 0.021 4.5E-07 49.9 10.6 58 114-173 99-157 (451)
434 cd02117 NifH_like This family 96.7 0.0033 7.1E-08 50.3 5.5 27 116-142 1-27 (212)
435 PRK08972 fliI flagellum-specif 96.7 0.012 2.6E-07 52.0 9.2 88 115-206 162-264 (444)
436 COG3267 ExeA Type II secretory 96.7 0.037 8.1E-07 45.1 11.3 101 101-206 38-143 (269)
437 COG1936 Predicted nucleotide k 96.7 0.0014 3E-08 50.1 3.0 20 117-136 2-21 (180)
438 PRK08927 fliI flagellum-specif 96.7 0.018 4E-07 50.9 10.4 89 114-206 157-260 (442)
439 TIGR01967 DEAH_box_HrpA ATP-de 96.7 0.033 7.1E-07 55.5 13.1 68 100-173 69-138 (1283)
440 COG2274 SunT ABC-type bacterio 96.7 0.013 2.8E-07 55.2 9.9 27 115-141 499-525 (709)
441 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0027 5.9E-08 51.0 4.9 22 116-137 31-52 (216)
442 TIGR01039 atpD ATP synthase, F 96.7 0.019 4.1E-07 51.0 10.4 91 115-206 143-249 (461)
443 TIGR02868 CydC thiol reductant 96.7 0.0098 2.1E-07 54.3 9.1 28 114-141 360-387 (529)
444 PRK06002 fliI flagellum-specif 96.7 0.012 2.7E-07 52.1 9.2 89 115-206 165-266 (450)
445 PRK12339 2-phosphoglycerate ki 96.7 0.0018 3.8E-08 51.3 3.7 25 115-139 3-27 (197)
446 TIGR00665 DnaB replicative DNA 96.7 0.27 5.8E-06 43.8 17.9 40 115-155 195-234 (434)
447 TIGR02788 VirB11 P-type DNA tr 96.7 0.0026 5.5E-08 54.0 4.8 111 115-235 144-256 (308)
448 PRK14737 gmk guanylate kinase; 96.7 0.0017 3.7E-08 50.9 3.4 26 114-139 3-28 (186)
449 TIGR00073 hypB hydrogenase acc 96.7 0.0022 4.8E-08 51.1 4.2 32 109-140 16-47 (207)
450 COG1126 GlnQ ABC-type polar am 96.7 0.0019 4.1E-08 51.2 3.5 34 115-151 28-61 (240)
451 PRK14532 adenylate kinase; Pro 96.7 0.0016 3.5E-08 50.9 3.2 23 118-140 3-25 (188)
452 PF03193 DUF258: Protein of un 96.7 0.0035 7.6E-08 47.7 4.8 36 101-139 24-59 (161)
453 PRK09302 circadian clock prote 96.6 0.016 3.5E-07 52.6 10.0 88 114-205 30-141 (509)
454 PRK11388 DNA-binding transcrip 96.6 0.0054 1.2E-07 57.3 7.1 63 93-157 324-388 (638)
455 PRK05922 type III secretion sy 96.6 0.02 4.3E-07 50.7 10.0 88 115-206 157-259 (434)
456 PF13521 AAA_28: AAA domain; P 96.6 0.0016 3.4E-08 49.8 2.9 21 118-138 2-22 (163)
457 cd01428 ADK Adenylate kinase ( 96.6 0.0018 3.8E-08 50.8 3.3 23 118-140 2-24 (194)
458 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0023 5E-08 50.7 3.9 22 115-136 28-49 (200)
459 cd00071 GMPK Guanosine monopho 96.6 0.0016 3.5E-08 48.4 2.8 24 117-140 1-24 (137)
460 PRK00698 tmk thymidylate kinas 96.6 0.0074 1.6E-07 47.7 6.8 27 116-142 4-30 (205)
461 PRK06731 flhF flagellar biosyn 96.6 0.02 4.4E-07 47.5 9.5 39 114-154 74-112 (270)
462 cd01132 F1_ATPase_alpha F1 ATP 96.6 0.016 3.4E-07 48.0 8.8 88 115-206 69-173 (274)
463 PRK10078 ribose 1,5-bisphospho 96.6 0.0017 3.8E-08 50.8 3.1 25 116-140 3-27 (186)
464 PRK08149 ATP synthase SpaL; Va 96.6 0.018 3.9E-07 50.9 9.6 88 115-206 151-253 (428)
465 PF06414 Zeta_toxin: Zeta toxi 96.6 0.0025 5.3E-08 50.5 3.9 118 113-235 13-134 (199)
466 PRK05057 aroK shikimate kinase 96.6 0.0023 5E-08 49.5 3.6 25 116-140 5-29 (172)
467 cd02029 PRK_like Phosphoribulo 96.6 0.008 1.7E-07 49.5 6.9 26 117-142 1-26 (277)
468 TIGR02524 dot_icm_DotB Dot/Icm 96.6 0.0059 1.3E-07 52.8 6.5 100 106-210 126-228 (358)
469 TIGR03498 FliI_clade3 flagella 96.6 0.011 2.3E-07 52.2 8.1 89 115-206 140-242 (418)
470 PRK13946 shikimate kinase; Pro 96.6 0.0024 5.1E-08 50.0 3.7 27 115-141 10-36 (184)
471 TIGR01447 recD exodeoxyribonuc 96.6 0.0064 1.4E-07 56.0 7.0 51 116-166 161-213 (586)
472 PRK13948 shikimate kinase; Pro 96.6 0.0023 5E-08 49.9 3.6 28 114-141 9-36 (182)
473 COG3598 RepA RecA-family ATPas 96.6 0.011 2.3E-07 49.7 7.6 89 116-204 90-204 (402)
474 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.0031 6.7E-08 50.2 4.3 115 115-236 29-155 (204)
475 PF09848 DUF2075: Uncharacteri 96.6 0.011 2.4E-07 51.2 8.0 41 116-156 2-42 (352)
476 PRK13236 nitrogenase reductase 96.6 0.0043 9.4E-08 52.3 5.4 31 112-142 3-33 (296)
477 cd03114 ArgK-like The function 96.6 0.0056 1.2E-07 46.1 5.5 36 117-154 1-36 (148)
478 cd02032 Bchl_like This family 96.6 0.0045 9.8E-08 51.3 5.4 26 117-142 2-27 (267)
479 PRK06936 type III secretion sy 96.6 0.02 4.3E-07 50.6 9.5 89 114-206 161-264 (439)
480 cd01134 V_A-ATPase_A V/A-type 96.6 0.033 7.1E-07 47.8 10.5 87 115-205 157-265 (369)
481 COG1124 DppF ABC-type dipeptid 96.6 0.0028 6E-08 51.1 3.9 121 114-237 32-207 (252)
482 PF01078 Mg_chelatase: Magnesi 96.6 0.0047 1E-07 48.9 5.1 43 94-138 3-45 (206)
483 PF02463 SMC_N: RecF/RecN/SMC 96.6 0.019 4.2E-07 46.0 8.9 45 193-237 157-204 (220)
484 COG0396 sufC Cysteine desulfur 96.6 0.021 4.6E-07 45.8 8.7 59 184-244 153-215 (251)
485 COG4778 PhnL ABC-type phosphon 96.5 0.0035 7.6E-08 48.0 4.1 35 115-152 37-71 (235)
486 COG2842 Uncharacterized ATPase 96.5 0.02 4.3E-07 47.6 8.8 90 115-212 94-185 (297)
487 PRK13833 conjugal transfer pro 96.5 0.011 2.4E-07 50.3 7.6 107 116-233 145-251 (323)
488 TIGR02688 conserved hypothetic 96.5 0.019 4.2E-07 50.4 9.1 61 116-205 210-271 (449)
489 PF00142 Fer4_NifH: 4Fe-4S iro 96.5 0.006 1.3E-07 50.0 5.7 40 116-157 1-40 (273)
490 PRK14738 gmk guanylate kinase; 96.5 0.0025 5.5E-08 50.8 3.5 25 114-138 12-36 (206)
491 PRK05537 bifunctional sulfate 96.5 0.005 1.1E-07 56.5 5.8 49 93-141 368-418 (568)
492 PLN02674 adenylate kinase 96.5 0.012 2.7E-07 48.0 7.4 26 115-140 31-56 (244)
493 PRK08760 replicative DNA helic 96.5 0.41 8.8E-06 43.2 17.8 50 115-167 229-278 (476)
494 PLN02459 probable adenylate ki 96.5 0.016 3.4E-07 47.7 8.1 25 116-140 30-54 (261)
495 COG1116 TauB ABC-type nitrate/ 96.5 0.0024 5.2E-08 51.7 3.2 27 114-140 28-54 (248)
496 PRK04132 replication factor C 96.5 0.02 4.4E-07 54.6 9.8 96 122-232 571-670 (846)
497 cd01136 ATPase_flagellum-secre 96.5 0.022 4.7E-07 48.6 9.1 88 115-206 69-171 (326)
498 TIGR01281 DPOR_bchL light-inde 96.5 0.0055 1.2E-07 50.8 5.5 26 117-142 2-27 (268)
499 PHA02530 pseT polynucleotide k 96.5 0.0026 5.5E-08 53.6 3.5 24 116-139 3-26 (300)
500 PRK03731 aroL shikimate kinase 96.5 0.003 6.4E-08 48.6 3.6 25 116-140 3-27 (171)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-30 Score=239.51 Aligned_cols=150 Identities=34% Similarity=0.540 Sum_probs=135.7
Q ss_pred ccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 037337 97 ESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK-NHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR 175 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 175 (247)
+|.+..++.+.+.|.+++..+++|+||||+||||||++++++.. ...+|+.++||.+|++++...++.+|+..++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999988779999999999999999999999988 88899999999999999999999999999987544
Q ss_pred CC---ChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhccCCCccceeC
Q 037337 176 EE---SESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLSRKMDSQQNFLV 247 (247)
Q Consensus 176 ~~---~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~~~~~~~~~~~~ 247 (247)
.. ........+.+.|.. +|++|||||||+..+|+.+..++|...+||+|++|||+++|+...|++..++++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred ccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 33 335677788888887 789999999999999999999999999999999999999999876888777654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=3.6e-26 Score=191.52 Aligned_cols=147 Identities=27% Similarity=0.438 Sum_probs=116.2
Q ss_pred chHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC--
Q 037337 99 RMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF-- 174 (247)
Q Consensus 99 R~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~-- 174 (247)
|+.++++|.++|.+ ++.++|+|+|+||+||||||..++++...+.+|++++|++++...+...++..|+..++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 67899999999999999999999999666677999999999999999999999999998773
Q ss_pred --CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhccCCCcccee
Q 037337 175 --REESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLSRKMDSQQNFL 246 (247)
Q Consensus 175 --~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~~~~~~~~~~~ 246 (247)
...+.......+.+.|.+ +++||||||+|+...|+.+...++....|++||+|||+.+++....+....|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 334667788899999988 48999999999999998887777777789999999999999864333344443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=4e-19 Score=173.28 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=106.8
Q ss_pred CCcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe---CCC----------
Q 037337 92 GYEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM---SQS---------- 156 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~---------- 156 (247)
...+++||+..++++..+|. .++.++++||||||+||||||+.+|++...+ |++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhccccccc
Confidence 45679999999999998875 4468999999999999999999999988765 888877642 111
Q ss_pred -CC-HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 157 -PD-IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 157 -~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
.+ ...+..+++..+-....... .....+++.|.+ +|+||||||+|+..+|+.+.....+.++||+||||||+..+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 00 12333444444322111100 012456677776 68999999999998898886655566789999999999999
Q ss_pred hhccCCCcccee
Q 037337 235 LSRKMDSQQNFL 246 (247)
Q Consensus 235 a~~~~~~~~~~~ 246 (247)
+. .++..+.|+
T Consensus 337 l~-~~~~~~~~~ 347 (1153)
T PLN03210 337 LR-AHGIDHIYE 347 (1153)
T ss_pred HH-hcCCCeEEE
Confidence 86 355656554
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.2e-11 Score=108.16 Aligned_cols=115 Identities=21% Similarity=0.131 Sum_probs=88.7
Q ss_pred CCcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|..++||+++++.|...+. ......+.|+|++|+|||++++.+++........-.++|+++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 56779999999999988873 33456788999999999999999999886653223578888888888889999999
Q ss_pred HHhCC-CC--CCCChHHHHHHHHHHHcC-CCcEEEEEeCCCCc
Q 037337 168 DKLGL-TF--REESESGRARSLFSRLNR-EKRILVILDNIWEH 206 (247)
Q Consensus 168 ~~l~~-~~--~~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~ 206 (247)
.++.. .. ...+..+....+.+.+.. ++..+||||+++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 99864 22 223456667777777753 35688999999875
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.34 E-value=4.9e-11 Score=103.33 Aligned_cols=116 Identities=25% Similarity=0.278 Sum_probs=86.7
Q ss_pred CCCcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccC-C--C-CEEEEEEeCCCCCHHHH
Q 037337 91 KGYEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNHK-L--F-DLVVFSEMSQSPDIRKV 162 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~--f-~~~~wv~~~~~~~~~~l 162 (247)
..|..++||+++++.|..++. +.....+.|+|++|+|||++++.+++.+.... . . -..+|+++....+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 345689999999999998875 33456899999999999999999999865321 0 1 24688999888888899
Q ss_pred HHHHHHHh---CCCCC--CCChHHHHHHHHHHHc-CCCcEEEEEeCCCCc
Q 037337 163 QGEIADKL---GLTFR--EESESGRARSLFSRLN-REKRILVILDNIWEH 206 (247)
Q Consensus 163 ~~~i~~~l---~~~~~--~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~ 206 (247)
+..|+.++ +...+ ..+..+....+.+.+. .+++++||||+++..
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 99999988 33222 2244555666777664 345689999999977
No 6
>PF05729 NACHT: NACHT domain
Probab=99.27 E-value=3e-11 Score=92.53 Aligned_cols=114 Identities=24% Similarity=0.293 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKL----FDLVVFSEMSQSPDIR---KVQGEIADKLGLTFREESESGRARSLFS 188 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~l~~ 188 (247)
+++.|+|.+|+||||+++.++..+..... +...+|++.+...... .+...|.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999999876543 3456677666544332 3444444444322111 1113333
Q ss_pred HHcCCCcEEEEEeCCCCccc---------hhh-hcccCCC-CCCCeEEEEeeCchhh
Q 037337 189 RLNREKRILVILDNIWEHLD---------LQV-VGIPHGD-DHKGCKVLFTARSLDV 234 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~~~---------~~~-l~~~~~~-~~~~s~iiiTtR~~~v 234 (247)
.+...++++||||+++.... +.. +...+.. ..+++++++|+|....
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 44455789999999987633 111 2112222 3568999999998877
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.23 E-value=4.7e-11 Score=88.13 Aligned_cols=115 Identities=24% Similarity=0.326 Sum_probs=83.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH---KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE-ESESGRARSLFSRL 190 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 190 (247)
.+.+.|+|++|+|||+++..+++..... ..-..++|+++....+...+...|+..++..... .+..+..+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999987531 0123477999998889999999999999987766 56777778888888
Q ss_pred cCCCcEEEEEeCCCCc-c--chhhhcccCCCCCCCeEEEEeeCc
Q 037337 191 NREKRILVILDNIWEH-L--DLQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 191 ~~~kr~LlvlDdv~~~-~--~~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
...+..+||+||++.. . .++.+.... ...+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 7756579999999875 2 233332222 2677888888776
No 8
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.1e-10 Score=96.40 Aligned_cols=117 Identities=25% Similarity=0.265 Sum_probs=93.1
Q ss_pred CCcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
-|..+.+|++++.++...|. +..+.-+.|+|++|+|||+.++.+++.++....-..++||+|....+..+++..|+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34558999999999887764 34455599999999999999999999987753222389999999999999999999
Q ss_pred HHhCC-CCCCCChHHHHHHHHHHHcC-CCcEEEEEeCCCCccc
Q 037337 168 DKLGL-TFREESESGRARSLFSRLNR-EKRILVILDNIWEHLD 208 (247)
Q Consensus 168 ~~l~~-~~~~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~ 208 (247)
+.++. +....+..+....+.+.+.. ++.+++|||+++....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 99963 33346677778888888843 5678888999987643
No 9
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=8.8e-10 Score=82.12 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=74.9
Q ss_pred ccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 037337 97 ESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE 176 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~ 176 (247)
.|++..+..+...+.......+.|+|++|+|||++++.+++..... ...++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3788899999998887667889999999999999999999988532 2346677665544322221111100
Q ss_pred CChHHHHHHHHHHHcCCCcEEEEEeCCCCc-----cchhhhcccCCC---CCCCeEEEEeeCchh
Q 037337 177 ESESGRARSLFSRLNREKRILVILDNIWEH-----LDLQVVGIPHGD---DHKGCKVLFTARSLD 233 (247)
Q Consensus 177 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~~~~---~~~~s~iiiTtR~~~ 233 (247)
............+..+|++||++.. ..+......+.. ...++++|+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111112235689999999964 112222122211 136788988888654
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=3.6e-09 Score=87.75 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=63.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH---
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSR--- 189 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~--- 189 (247)
.+...++|+|++|+|||||++.+++...... + ...|+ +....+..+++..|+..++.+....+.......+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998876331 1 22233 3344577889999999998765554444444444433
Q ss_pred -HcCCCcEEEEEeCCCCc
Q 037337 190 -LNREKRILVILDNIWEH 206 (247)
Q Consensus 190 -l~~~kr~LlvlDdv~~~ 206 (247)
+..+++.+||+||++..
T Consensus 118 ~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHhCCCCeEEEEECcccC
Confidence 33456799999999986
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.08 E-value=1.2e-10 Score=94.05 Aligned_cols=139 Identities=17% Similarity=0.284 Sum_probs=76.4
Q ss_pred cccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH---------H
Q 037337 96 FESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE---------I 166 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~---------i 166 (247)
|+||+++++.|.+++..+....+.|+|+.|+|||+|++.+.+..+... + .++|+......+...+... +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999876678999999999999999999999885431 1 3445554444332221111 1
Q ss_pred HHHhCC---CC--------CCCChHHHHHHHHHHHc-CCCcEEEEEeCCCCcc-ch-------hhhcccCC--CCCCCeE
Q 037337 167 ADKLGL---TF--------REESESGRARSLFSRLN-REKRILVILDNIWEHL-DL-------QVVGIPHG--DDHKGCK 224 (247)
Q Consensus 167 ~~~l~~---~~--------~~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~~-~~-------~~l~~~~~--~~~~~s~ 224 (247)
...+.. .. ...........+.+.+. .+++++||+||++... .. ..+...+. .......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111211 10 11122344555666663 3345999999998765 11 11211111 1234455
Q ss_pred EEEeeCchhhhh
Q 037337 225 VLFTARSLDVLS 236 (247)
Q Consensus 225 iiiTtR~~~va~ 236 (247)
+++++...++..
T Consensus 159 ~v~~~S~~~~~~ 170 (234)
T PF01637_consen 159 IVITGSSDSLME 170 (234)
T ss_dssp EEEEESSHHHHH
T ss_pred EEEECCchHHHH
Confidence 666666666654
No 12
>PTZ00202 tuzin; Provisional
Probab=99.06 E-value=2.3e-08 Score=86.52 Aligned_cols=137 Identities=19% Similarity=0.196 Sum_probs=87.9
Q ss_pred cccCCCcccccchHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 88 MSNKGYEAFESRMSTLNDILGALRNP---DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..|+.+..|+||+.++..|...|.+. ..++++|.|++|+|||||++.+..... + ...+++.. +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 45667889999999999999988632 246899999999999999999996654 1 24444444 6799999
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHH----cC-CCcEEEEEeCCCCccchhhhc---ccCCCCCCCeEEEEeeCchhh
Q 037337 165 EIADKLGLTFREESESGRARSLFSRL----NR-EKRILVILDNIWEHLDLQVVG---IPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l----~~-~kr~LlvlDdv~~~~~~~~l~---~~~~~~~~~s~iiiTtR~~~v 234 (247)
.++.+||.+.. ....++...+.+.| .. +++.+||+-=- ....+...+ ..+-+...-|+|++----+++
T Consensus 328 ~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 328 SVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 99999997433 33344555555544 22 45666665322 222221110 112233456777776555444
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=5.7e-09 Score=100.54 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS-QSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~l~~~i~ 167 (247)
+|..+..++-|...++.|-. ....+++.|+|++|.||||++..+.+. ++.++|+++. .+.+...+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 34456678888877776643 234689999999999999999999853 2258899996 4456667777777
Q ss_pred HHhCCCCCC--------------CChHHHHHHHHHHHcC-CCcEEEEEeCCCCccc--h-hhhcccCCCCCCCeEEEEee
Q 037337 168 DKLGLTFRE--------------ESESGRARSLFSRLNR-EKRILVILDNIWEHLD--L-QVVGIPHGDDHKGCKVLFTA 229 (247)
Q Consensus 168 ~~l~~~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~--~-~~l~~~~~~~~~~s~iiiTt 229 (247)
..++..... .+.......+...+.. +.+++|||||+....+ . +.+...+.....+.++|+||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777421111 1222334445555533 4689999999987532 1 22322223346678899999
Q ss_pred Cch
Q 037337 230 RSL 232 (247)
Q Consensus 230 R~~ 232 (247)
|..
T Consensus 160 R~~ 162 (903)
T PRK04841 160 RNL 162 (903)
T ss_pred CCC
Confidence 974
No 14
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.99 E-value=2.3e-09 Score=83.70 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 95 AFESRMSTLNDILGALR---NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
.|+||+++++.|...+. ....+.+.|+|++|+|||+|.+.++........+ .+.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence 48999999999999882 3456899999999999999999999998876333 444444444
No 15
>PF13173 AAA_14: AAA domain
Probab=98.97 E-value=1.7e-09 Score=79.66 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=70.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
.+++.|.|+.|+|||||+++++.+.. ....++|+++...........+ ..+.+.+.... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKP-G 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhcc-C
Confidence 36899999999999999999998877 1345778876654432110000 12223333223 4
Q ss_pred cEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 195 RILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 195 r~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
..+|+||+++...+|......+.+.....+|++|+.+.....
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 589999999998888776566655556789999999887764
No 16
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.90 E-value=4.7e-09 Score=85.79 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=63.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCCC--ChHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS--PDIRKVQGEI-----ADKLGLTFREE--SESGRARS 185 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i-----~~~l~~~~~~~--~~~~~~~~ 185 (247)
...++|.|++|+|||||++.+++..... +|+...|+.+..+ .++.+++..+ +..++.+.... ........
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988765 7999999987776 7889999988 33333211000 00111222
Q ss_pred HHHHHcCCCcEEEEEeCCCCc
Q 037337 186 LFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 186 l~~~l~~~kr~LlvlDdv~~~ 206 (247)
...+...+++.+|++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 323334467899999998754
No 17
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.88 E-value=1.5e-08 Score=86.70 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
|.....++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++.......-...++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 33456789999999999999887766678999999999999999999987643211224555554
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.87 E-value=3.7e-08 Score=91.51 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=82.2
Q ss_pred CcccccchHHHHHHHHHhcC----CC-ccEEEEEcCCCCcHHHHHHHHHHHhccc---CCCC--EEEEEEeCCCCCHHHH
Q 037337 93 YEAFESRMSTLNDILGALRN----PD-ISMLGICGMGGIGKTMLEKEVARKAKNH---KLFD--LVVFSEMSQSPDIRKV 162 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~----~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~l 162 (247)
|..+.||++|++.|...|.. .. ..++.|+|++|+|||++++.+.+.++.. .... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 67799999999999887752 22 3567899999999999999999887432 1122 3788999888888999
Q ss_pred HHHHHHHhCCCCC--CCChHHHHHHHHHHHcC--CCcEEEEEeCCCCc
Q 037337 163 QGEIADKLGLTFR--EESESGRARSLFSRLNR--EKRILVILDNIWEH 206 (247)
Q Consensus 163 ~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~--~kr~LlvlDdv~~~ 206 (247)
+..|..++....+ ..+..+....+++.+.. ....+||||+++..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 9999988843222 22334455666666522 22358999999865
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=6.8e-08 Score=88.87 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=96.3
Q ss_pred cccCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHH
Q 037337 88 MSNKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEI 166 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i 166 (247)
.+|.++...+-|...++.|.+ ..+.+.+.|..|+|.|||||+..++..... -..+.|.+++.. .+...+++.+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHH
Confidence 445557778888777766554 236799999999999999999999984333 246899988754 5688888888
Q ss_pred HHHhCCCCCC--------------CChHHHHHHHHHHHcC-CCcEEEEEeCCCCccc---hhhhcccCCCCCCCeEEEEe
Q 037337 167 ADKLGLTFRE--------------ESESGRARSLFSRLNR-EKRILVILDNIWEHLD---LQVVGIPHGDDHKGCKVLFT 228 (247)
Q Consensus 167 ~~~l~~~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~---~~~l~~~~~~~~~~s~iiiT 228 (247)
+..++...+. .+.....+.+..-+.+ .+++.+||||..-..+ ...+.-.+...+.+...++|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 8888743332 1223345555555533 3568999999875532 12232233456779999999
Q ss_pred eCchh
Q 037337 229 ARSLD 233 (247)
Q Consensus 229 tR~~~ 233 (247)
||+..
T Consensus 167 SR~rP 171 (894)
T COG2909 167 SRSRP 171 (894)
T ss_pred eccCC
Confidence 99864
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.1e-08 Score=84.24 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=74.9
Q ss_pred ccCCCcccccchHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHH
Q 037337 89 SNKGYEAFESRMSTL---NDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQG 164 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~---~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~ 164 (247)
.|....+++|.+..+ .-|.+++..+......+|||+|+||||||+.++...... | ..++... ++.++ +
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r 90 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-R 90 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-H
Confidence 345567788887766 336677777888888899999999999999999876654 3 2222222 22221 1
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchhh
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLF--TARSLDV 234 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iii--TtR~~~v 234 (247)
. .++.-.+....+++.+|++|+|... .+-+.+ +|.-..|.-|+| ||-|++.
T Consensus 91 ~----------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF 145 (436)
T COG2256 91 E----------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSF 145 (436)
T ss_pred H----------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCe
Confidence 1 2233333333457899999999865 334444 233456776665 5555443
No 21
>PLN03025 replication factor C subunit; Provisional
Probab=98.82 E-value=4.3e-08 Score=83.48 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=74.8
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-EEEEEEeCCCCCHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFD-LVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
|....+++|.++.++.|..++..+..+.+.++|++|+||||+|..+++...... |. .++-++.+...... ..+.+..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHH-HHHHHHH
Confidence 445577899999999898888777666788999999999999999999875432 22 23333433333322 2222222
Q ss_pred HhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc
Q 037337 169 KLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHL--DLQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 169 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
.+..... .+..++.-+++||+++... ....+...+......+++++++..
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 2110000 0011245789999998762 223332333223455777776643
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=3.3e-08 Score=87.14 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=43.5
Q ss_pred cCCCcccccchHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLND---ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~---L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|++..+.. |.+++.......+.++|++|+||||||+.+++....
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4456789999988766 888887777778899999999999999999987653
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=7.3e-08 Score=88.69 Aligned_cols=124 Identities=13% Similarity=0.154 Sum_probs=78.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCEE
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKL-------------------FDLV 148 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 148 (247)
.|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.+..... |..+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 34456789999999999999998765 456679999999999999999998754311 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----cCCCcEEEEEeCCCCcc--chhhhcccCCCCCCC
Q 037337 149 VFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRL----NREKRILVILDNIWEHL--DLQVVGIPHGDDHKG 222 (247)
Q Consensus 149 ~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~ 222 (247)
++++......+++ +..+.+.+ ..++.-++|||+++... .+..+...+.....+
T Consensus 91 iEIDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 2332222222211 12222221 12345688899999773 356665555444567
Q ss_pred eEEEEeeCchh
Q 037337 223 CKVLFTARSLD 233 (247)
Q Consensus 223 s~iiiTtR~~~ 233 (247)
+++|++|.+.+
T Consensus 150 v~FILaTtd~~ 160 (830)
T PRK07003 150 VKFILATTDPQ 160 (830)
T ss_pred eEEEEEECChh
Confidence 78787777654
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.76 E-value=1.4e-07 Score=80.16 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=44.9
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+++|+++.++.|..++.....+.+.++|++|+|||++|+.+++.....
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34456789999999999999987666678999999999999999999987544
No 25
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.74 E-value=4.7e-08 Score=83.84 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCChHH-------HHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP--DIRKVQGEIADKLGLTFREESESG-------RARS 185 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~~~~~~~-------~~~~ 185 (247)
-....|+|++|+|||||++.+++..... +|+..+|+.+.... .+.++++.+...+-.+....+... .++.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3577899999999999999999998775 79999999988886 677777777632211111222211 1122
Q ss_pred HHHHHcCCCcEEEEEeCCCCc
Q 037337 186 LFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 186 l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.......+++++|++|++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 222224567899999999743
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.6e-07 Score=81.33 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=43.5
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+..++.|.+.+..++ ...+.++|++|+||||+|+.+++....
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4455789999999999999887665 356789999999999999999998753
No 27
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.72 E-value=6.3e-08 Score=81.43 Aligned_cols=123 Identities=16% Similarity=0.237 Sum_probs=76.7
Q ss_pred cCCCcccccchHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLND---ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~---L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
|....+++|.+..+.. |.+.++.+....+.+||++|+||||||+.++..-+... ..||..+....-..-.+.|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 3345667776665532 45555667788899999999999999999998877653 5677777655433334444
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEE--eeCchhh
Q 037337 167 ADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLF--TARSLDV 234 (247)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iii--TtR~~~v 234 (247)
+++-. .+....++|.+|.+|++..- .+-+.+ +|.-.+|+-++| ||-+++.
T Consensus 210 fe~aq---------------~~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 210 FEQAQ---------------NEKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSF 263 (554)
T ss_pred HHHHH---------------HHHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCcc
Confidence 43321 11112346899999999754 233333 334456665554 5555543
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=98.71 E-value=7.3e-08 Score=86.57 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=63.5
Q ss_pred cCCCcccccchHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRN----PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
|....+++|+++.++.|..|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++.++++...+... +..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHH
Confidence 44567799999999999988863 2268899999999999999999999874 32 34455554433332 233
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 166 IADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 166 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++........ +.+.++-+||||+++..
T Consensus 84 ~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 84 VAGEAATSGS--------------LFGARRKLILLDEVDGI 110 (482)
T ss_pred HHHHhhccCc--------------ccCCCCeEEEEecCccc
Confidence 3222211100 00124689999999875
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1e-07 Score=89.32 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=44.4
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDIS-MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++..++.. ...++|++|+||||+|+.+++.+..
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3445678999999999999998876654 4589999999999999999998754
No 30
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=1.3e-07 Score=86.10 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=44.8
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+...+.|.+++..++ ...+.++|++|+||||+|+.+++.+-.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34556789999999999999998765 457789999999999999999988654
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.8e-07 Score=84.97 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=44.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+-.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344557899999999999999987764 55688999999999999999998754
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.68 E-value=2.3e-07 Score=78.46 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=40.8
Q ss_pred cccccchHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALR-----NPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+|+|+++.++.|..++. ......+.++|++|+|||+||+.+++....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999988886 233566889999999999999999998764
No 33
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.68 E-value=1.4e-07 Score=82.47 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=73.8
Q ss_pred CcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 037337 93 YEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGL 172 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 172 (247)
..+.++.+..++.+...|... ..+.++|++|+|||++|+.+++.......++.+.|+.+++..+..+++....-. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 345777889999999988755 677889999999999999999998766567888999999988877765432110 00
Q ss_pred CCCCCChHHHHHHHHHHHc-CCCcEEEEEeCCCCc
Q 037337 173 TFREESESGRARSLFSRLN-REKRILVILDNIWEH 206 (247)
Q Consensus 173 ~~~~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~ 206 (247)
... .......+.+..... ..++++||+|++...
T Consensus 251 gy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeE-ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000 001111112222221 235799999999865
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=7.7e-08 Score=77.71 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 037337 99 RMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREES 178 (247)
Q Consensus 99 R~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~ 178 (247)
....++.+.+++.......+.|+|++|+|||+||+.+++..... ....+|++++..... .
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~------~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA------D------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh------H------------
Confidence 45577778877666667889999999999999999999887543 334567765432210 0
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCCcc---c-hhhhcccCCC-CCCCeEEEEeeCc
Q 037337 179 ESGRARSLFSRLNREKRILVILDNIWEHL---D-LQVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 179 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~---~-~~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
..+.+.+.. .-+|+|||++... . ...+...+.. ...+.++|+||+.
T Consensus 82 -----~~~~~~~~~--~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 82 -----PEVLEGLEQ--ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -----HHHHhhccc--CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 111122222 2489999998653 2 2223222211 1234578888874
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=8e-08 Score=77.96 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
..+.+.+||++|+|||+|++.+++....+ ...+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 44678999999999999999999987654 2345677653
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=2.9e-07 Score=82.07 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=43.4
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++.+..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344567899999988888888877655 45789999999999999999988653
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=3e-07 Score=82.75 Aligned_cols=127 Identities=11% Similarity=0.180 Sum_probs=78.9
Q ss_pred cccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCE
Q 037337 88 MSNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNHKL-------------------FDL 147 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~ 147 (247)
+.|....+++|.+..++.|.+++..+.. ....++|++|+||||+|+.+++.+-.... +..
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3455567899999999999999987654 45689999999999999999998754321 112
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEE
Q 037337 148 VVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKV 225 (247)
Q Consensus 148 ~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~i 225 (247)
++.++......++++ +.+...+.... ..++.-++|+|+++.. .....+...+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 333443333333332 22222221110 1234568889999875 3455555555444556777
Q ss_pred EEeeCc
Q 037337 226 LFTARS 231 (247)
Q Consensus 226 iiTtR~ 231 (247)
|++|-+
T Consensus 153 Ilattd 158 (509)
T PRK14958 153 ILATTD 158 (509)
T ss_pred EEEECC
Confidence 766543
No 38
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.64 E-value=2.3e-07 Score=79.95 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCh---HHH----HHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS--PDIRKVQGEIADKLGLTFREESE---SGR----ARS 185 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l~~~~~~~~~---~~~----~~~ 185 (247)
-..++|+|++|+|||||++.+++.+... +|+..+|+.+..+ .++.++++.+...+-...-..+. ... .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4678999999999999999999988765 7998889988866 78889999885433211111111 111 122
Q ss_pred HHHHHcCCCcEEEEEeCCCCc
Q 037337 186 LFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 186 l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.......+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 222334568899999999743
No 39
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.63 E-value=2.5e-07 Score=78.64 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=73.4
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|....+++|.+...+.+..++..+. ...+.++|++|+|||++|+.+++..... ..+++++. ..... .+..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~-----~~~i~~~~-~~~~~-i~~~l 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-----VLFVNGSD-CRIDF-VRNRL 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc-----ceEeccCc-ccHHH-HHHHH
Confidence 34556789999999999999887665 4566669999999999999999876322 34555554 22222 11111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHH-cCCCcEEEEEeCCCCcc---chhhhcccCCCCCCCeEEEEeeCch
Q 037337 168 DKLGLTFREESESGRARSLFSRL-NREKRILVILDNIWEHL---DLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l-~~~kr~LlvlDdv~~~~---~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
..+ .... ....+-+||+|+++... ....+...+.....++++|+||...
T Consensus 89 ~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 89 TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 111 0011 01134688999998651 1222322233335677888888654
No 40
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.62 E-value=4.2e-07 Score=76.91 Aligned_cols=113 Identities=23% Similarity=0.281 Sum_probs=81.4
Q ss_pred CcccccchHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRNPD---ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
...+.+|+.++..|...+.+.. +..+.|+|-.|+|||.+.+.+.+....+ .+|+++-..++.+.++..|+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHH
Confidence 3457799999999999886543 4566899999999999999999988433 5899999999999999999999
Q ss_pred hCCCCC-CCChH---HHHHHHHHHH-------cCCCcEEEEEeCCCCccchh
Q 037337 170 LGLTFR-EESES---GRARSLFSRL-------NREKRILVILDNIWEHLDLQ 210 (247)
Q Consensus 170 l~~~~~-~~~~~---~~~~~l~~~l-------~~~kr~LlvlDdv~~~~~~~ 210 (247)
.+.... +.... +........+ +.++.++|||||++...+.+
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 963322 21111 1122122222 12246999999999775543
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.62 E-value=2.6e-07 Score=73.50 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=37.9
Q ss_pred ccCCCcccccchHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 89 SNKGYEAFESRMSTLNDILGALR-----NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.|....+|+|.++.+..+.-++. ++...-+.+|||+|+||||||.-+++.....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 45567899999998888654443 2346778999999999999999999998765
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=5e-07 Score=81.56 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=43.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++.+..
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344557899999999999999987643 55789999999999999999987653
No 43
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=6.2e-07 Score=81.19 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=44.0
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++..++. ....++|++|+||||+|+.+++.+-.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344557899999999999999987654 45689999999999999999988743
No 44
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=9.4e-07 Score=76.60 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=95.3
Q ss_pred CCCcccccchHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 91 KGYEAFESRMSTLNDILGALRN----PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
.++....||+.+++.+.+|+.. +....+.|.|-+|.|||.+...++.+......-.+++|+++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 4578899999999999998863 456889999999999999999999988765333467999998878888888888
Q ss_pred HHHhCCC-CCCCChHHHHHHHHHHHcCCC-cEEEEEeCCCCccc--hhhhcccCCC-CCCCeEEEEe
Q 037337 167 ADKLGLT-FREESESGRARSLFSRLNREK-RILVILDNIWEHLD--LQVVGIPHGD-DHKGCKVLFT 228 (247)
Q Consensus 167 ~~~l~~~-~~~~~~~~~~~~l~~~l~~~k-r~LlvlDdv~~~~~--~~~l~~~~~~-~~~~s~iiiT 228 (247)
+..+-.. ............+..+....+ -+|+|+|+.+.... -..+...|.| .-+++|+|+.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 8887211 111222344555666664433 68999999986521 2223333322 2356666654
No 45
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=5.2e-07 Score=81.06 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=43.3
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+...+.|..++..+.. ..+.++|++|+||||+|+.+++.+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44457789999999999998887654 45689999999999999999998754
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.59 E-value=2e-07 Score=68.46 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=41.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC-CcE
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE-KRI 196 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~ 196 (247)
|.|+|++|+|||++|+.+++..... .+.++.+...+. ...+....+..+.+..... ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999997532 344543322100 1111222233333333222 369
Q ss_pred EEEEeCCCCc
Q 037337 197 LVILDNIWEH 206 (247)
Q Consensus 197 LlvlDdv~~~ 206 (247)
+|+|||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999865
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=8.2e-07 Score=75.46 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc----cCCCCEEEEEE-eCCCCCHHHHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN----HKLFDLVVFSE-MSQSPDIRKVQGEIA 167 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~-~~~~~~~~~l~~~i~ 167 (247)
.+++|.+...+.|..++..+. .....++|+.|+|||++|..++..+-. ..|+|...|.. -+.....++ .+.+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 457898888999999987665 456689999999999999999997632 23456555543 222233333 22333
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 168 DKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
..+...+. .+++-++|+|+++.. ..+..+...+.....++.+|++|.+.+.
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ 135 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ 135 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 33322111 124567777877654 4566776777666778999988876653
No 48
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=6.8e-07 Score=79.65 Aligned_cols=125 Identities=10% Similarity=0.099 Sum_probs=77.0
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcccC-------------------CCCEE
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNHK-------------------LFDLV 148 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 148 (247)
.|....+++|.+...+.|.+.+..++. ....++|+.|+||||+|+.+++.+-... .+..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 344567899999999999888876654 4788999999999999999998653210 11223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEE
Q 037337 149 VFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVL 226 (247)
Q Consensus 149 ~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~ii 226 (247)
+.++.++...++++ +.+.......+ ..+++-++|+|+++.. ..++.+...+......+.+|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44555444443332 22222221100 0124578999999865 33555555554445567666
Q ss_pred EeeC
Q 037337 227 FTAR 230 (247)
Q Consensus 227 iTtR 230 (247)
++|.
T Consensus 151 latt 154 (491)
T PRK14964 151 LATT 154 (491)
T ss_pred EEeC
Confidence 6653
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.8e-07 Score=81.42 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=78.3
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|....+++|.+..+..|..++..++. ..+.++|++|+||||+|+.+++.+........ ..|....+...+.....
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGIS 89 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCC
Confidence 445567899999999999999987764 45789999999999999999998754321110 11111111111111111
Q ss_pred HHhC-CCCCCCChHHHHHHHHHHH----cCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEee-Cchhh
Q 037337 168 DKLG-LTFREESESGRARSLFSRL----NREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTA-RSLDV 234 (247)
Q Consensus 168 ~~l~-~~~~~~~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTt-R~~~v 234 (247)
..+. .+.......+.+..+.+.+ ..++.-++|+|+++.. ..+..+...+......+.+|++| ....+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000 0000001111223333322 2335578999999976 34666655554434455555444 43444
No 50
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=4.7e-07 Score=83.06 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=44.7
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.+-.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 44556789999999999999998765 456789999999999999999987643
No 51
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=5.2e-07 Score=66.34 Aligned_cols=90 Identities=24% Similarity=0.160 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..+.|+|++|+||||+++.++....... ..+++++.+........... ...................+.+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999877652 34666655544332221111 11112222223334444455555554334
Q ss_pred EEEEEeCCCCccc
Q 037337 196 ILVILDNIWEHLD 208 (247)
Q Consensus 196 ~LlvlDdv~~~~~ 208 (247)
.+|++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999987743
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=7.1e-07 Score=81.67 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=44.0
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++..++. ....++|+.|+||||+|+.+++.+-.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344567899999999999999887654 56689999999999999999887653
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.56 E-value=6e-06 Score=76.19 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=43.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|.....++|++..+..+...+.......+.|+|++|+||||||+.+++....
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3445678999999999888887666678999999999999999999887643
No 54
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=3.9e-07 Score=83.55 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=44.3
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+.+..++. ....++|+.|+||||+|+.+++.+-.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 445567899999999999999887654 44689999999999999999988654
No 55
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.56 E-value=1.1e-06 Score=72.89 Aligned_cols=106 Identities=23% Similarity=0.287 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCC----CEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 037337 101 STLNDILGALRN---PDISMLGICGMGGIGKTMLEKEVARKAKNHKLF----DLVVFSEMSQSPDIRKVQGEIADKLGLT 173 (247)
Q Consensus 101 ~~~~~L~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 173 (247)
+.++.|.+.+.. .....+.|+|.+|.|||++++++++..-....- -.++++.+...++...++..|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 344555555543 245779999999999999999999876432111 1478889999999999999999999987
Q ss_pred CCCC-ChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 174 FREE-SESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 174 ~~~~-~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.... +...........++.-+--+||+|++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 6543 44444444555665445579999999875
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.56 E-value=1.1e-06 Score=75.24 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=42.8
Q ss_pred cCCCcccccchHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALR-----NPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+|+|+++.++.|..++. ......+.++|++|+|||+||+.+++....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 4456789999999999877664 234567899999999999999999998764
No 57
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.56 E-value=5.9e-07 Score=85.61 Aligned_cols=101 Identities=19% Similarity=0.402 Sum_probs=65.4
Q ss_pred CcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC---C-CEEEEEEeCCCCCHHHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKL---F-DLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
..+++||+++++.+++.|......-+.++|++|+|||++|..++........ . ...+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4578999999999999998776667789999999999999999998753211 1 234442 1 1111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 169 KLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 169 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
+.... ..-++.+..+.+.+...++.+|++|+++.
T Consensus 249 --g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~ 282 (821)
T CHL00095 249 --GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHT 282 (821)
T ss_pred --cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHH
Confidence 11111 12233444455554444579999999964
No 58
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=9.7e-07 Score=77.42 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.9
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+++|.+...+.|.+++.++.. ..+.++|++|+||||+|+.+++.+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34457799999999999998887654 458899999999999999999987653
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.3e-06 Score=78.29 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=43.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+..+..|...+..++ ...+.++|++|+||||+|+.+++.+-.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445778999999999988777654 467889999999999999999998754
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.52 E-value=1.7e-06 Score=74.61 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=42.8
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|....+++|.+..++.|.+++..+.. ....++|++|+|||++|+.++..+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999999876653 4678899999999999999998864
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=4.5e-07 Score=73.75 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=62.7
Q ss_pred cccccch-HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 037337 94 EAFESRM-STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGL 172 (247)
Q Consensus 94 ~~~~gR~-~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 172 (247)
..|++.. ..+..+.....+.....+.|+|++|+|||+|++.+++....+ ...+.|+++.. ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~------ 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL------ 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH------
Confidence 4455433 344444443334445679999999999999999999987655 23466765322 11111
Q ss_pred CCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc---chh-hhcccCCC-CCCCeEEEEeeCc
Q 037337 173 TFREESESGRARSLFSRLNREKRILVILDNIWEHL---DLQ-VVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 173 ~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~---~~~-~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
....+.+.+ .-+|||||++... .+. .+...+.. ...+..+|+||+.
T Consensus 85 -----------~~~~~~l~~--~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 85 -----------RDALEALEG--RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred -----------HHHHHHHhc--CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 112223333 3699999998542 121 22222211 1345669999974
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.51 E-value=7.9e-07 Score=84.71 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....+++||++++.+++..|......-+.++|++|+|||++|..++++...
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999988777677789999999999999999998753
No 63
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.50 E-value=1e-06 Score=84.19 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+++||+.++.++++.|.......+.++|++|+|||++|..++.....
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 35679999999999999998777777889999999999999999998753
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=9.9e-07 Score=80.04 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=44.4
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|++..++.|.+++..+. ...+.++|++|+||||+|+.+++.+..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34456789999999999999987654 457889999999999999999998754
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.49 E-value=1e-06 Score=82.95 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=65.6
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC---C-CEEEEEEeCCCCCHHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKL---F-DLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
...+++||++++..++..|......-+.++|++|+|||++|..+++....... + ...+|. + +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 34679999999999999888776677889999999999999999998744321 1 233442 1 111111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 168 DKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.... .....++.+..+.+.+...++.+|++|+++..
T Consensus 251 a~~~---~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 251 AGTK---YRGDFEERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred hhcc---ccchHHHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 1000 00122333444555544335689999998743
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.48 E-value=6.4e-07 Score=77.72 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=39.7
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++.|++..++.|.+.+. . ...+.+.++|++|+|||++|+.+++.....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 4568899999999887663 1 124568999999999999999999977643
No 67
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.48 E-value=9.5e-07 Score=77.22 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=39.1
Q ss_pred CcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+.++.|++.++++|.+.+.- ...+.+.++|++|+|||++|+.+++....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 34577999999998876531 23567899999999999999999987653
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.1e-06 Score=78.25 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDIS-MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|.+++.+++.. ...++|+.|+||||+|+.+++.+-.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3455678999999999999999877644 4689999999999999999988653
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=5.4e-07 Score=84.07 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=42.2
Q ss_pred cCCCcccccchHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLN---DILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~---~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+|+|++..+. .|.+.+..+....+.++|++|+||||||+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445577999998874 5667777777778899999999999999999987653
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2.1e-06 Score=74.88 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALRNPD----------ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~----------~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+++|.+..++.|.+++..+. ...+.++|++|+|||++|+.++..+-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 457899999999999887653 466889999999999999999987644
No 71
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.8e-06 Score=81.63 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+..
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3456799999999999999987654 45789999999999999999998754
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=2.2e-06 Score=78.50 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=44.5
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.+-..
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3445789999999999999988765 4578899999999999999999987543
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.5e-06 Score=73.23 Aligned_cols=52 Identities=27% Similarity=0.451 Sum_probs=43.6
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+...+.+.+++.++. ...+.++|++|+|||++|..+++....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445778999999999999998765 457889999999999999999888654
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=1.9e-06 Score=70.20 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
..+..+.++........+.|+|++|+|||+|++.+++..... ...+.|+++.
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 344555555544455789999999999999999999987644 2346676653
No 75
>PRK08181 transposase; Validated
Probab=98.39 E-value=4.9e-06 Score=68.89 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=49.8
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 037337 107 LGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSL 186 (247)
Q Consensus 107 ~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l 186 (247)
.+|+... ..+.++|++|+|||.||..+++..... .-.+.|++ ..+++..+..... ..+ ...+
T Consensus 100 ~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~~----~~~~ 161 (269)
T PRK08181 100 DSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----ELQ----LESA 161 (269)
T ss_pred HHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CCc----HHHH
Confidence 3566533 568999999999999999999887554 22345553 3555555543321 111 2233
Q ss_pred HHHHcCCCcEEEEEeCCCCc
Q 037337 187 FSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 187 ~~~l~~~kr~LlvlDdv~~~ 206 (247)
.+.+.. .-||||||+...
T Consensus 162 l~~l~~--~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLDK--FDLLILDDLAYV 179 (269)
T ss_pred HHHHhc--CCEEEEeccccc
Confidence 344433 359999999643
No 76
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.38 E-value=1.7e-06 Score=71.27 Aligned_cols=132 Identities=18% Similarity=0.150 Sum_probs=83.7
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEE-EEeCCCCCHHHHHHHH-
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVF-SEMSQSPDIRKVQGEI- 166 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~l~~~i- 166 (247)
.|+...+++|.+..+.-|.+.+.....+....|||+|+|||+.|+.+++.+-..+.|.+.+. .++|......-+-..+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 34556789999999999999998877889999999999999999999999877666766443 4444432211000000
Q ss_pred -HHHhCCCCCCCChHHHHHHHHHHH-cCCCc-EEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 167 -ADKLGLTFREESESGRARSLFSRL-NREKR-ILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 167 -~~~l~~~~~~~~~~~~~~~l~~~l-~~~kr-~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
+..+.... .... ..-++ -++|||+++.. +.|..+..........++.++.+..-
T Consensus 111 ~fakl~~~~------------~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 111 NFAKLTVLL------------KRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CHHHHhhcc------------ccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 00000000 0000 00122 57789999987 56777766665556677766655443
No 77
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.37 E-value=7.1e-06 Score=64.42 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.8
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 105 DILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 105 ~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|.+.+..++. ..+.++|+.|+|||++|+.+++.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555544 67889999999999999999998754
No 78
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-06 Score=70.62 Aligned_cols=124 Identities=20% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 92 GYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
.+.++=|-++++++|.+...- +.++-|.+||++|+|||-||+.++++.... | +.+..+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----IrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEeccH--
Confidence 355677789999998887641 257889999999999999999999987765 3 433332
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccc----------------hhhhcccCC--CCC
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLD----------------LQVVGIPHG--DDH 220 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~----------------~~~l~~~~~--~~~ 220 (247)
++.+. .+| ....+...+++..+.+.+++|.+|+++.... +-.+...+. +..
T Consensus 220 --ElVqK---YiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 --ELVQK---YIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred --HHHHH---Hhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 11111 122 1234566677777777889999999974311 111112121 335
Q ss_pred CCeEEEEeeCchhhh
Q 037337 221 KGCKVLFTARSLDVL 235 (247)
Q Consensus 221 ~~s~iiiTtR~~~va 235 (247)
.+.+||..|...++.
T Consensus 289 ~nvKVI~ATNR~D~L 303 (406)
T COG1222 289 GNVKVIMATNRPDIL 303 (406)
T ss_pred CCeEEEEecCCcccc
Confidence 678899888777664
No 79
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=1.9e-06 Score=71.52 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..+.++|.+|+|||.||..+++.+..+ ...++|++ ..+++..+...+..... . ....+.+.+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-~----~~~~~~~~l~~~-- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-E----DENEIIRSLVNA-- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-c----cHHHHHHHhcCC--
Confidence 468999999999999999999998755 23456664 44556666555432211 1 123344555553
Q ss_pred EEEEEeCCCC--ccchhh--hcccCCC-CCCCeEEEEeeCch
Q 037337 196 ILVILDNIWE--HLDLQV--VGIPHGD-DHKGCKVLFTARSL 232 (247)
Q Consensus 196 ~LlvlDdv~~--~~~~~~--l~~~~~~-~~~~s~iiiTtR~~ 232 (247)
=||||||+.. ..+|.. +...+.. -..+..+|+||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 333322 2222211 13456688888753
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4e-06 Score=76.96 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=44.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+++|.+..+..|.+++..+.. ....++|+.|+||||+|+.+++.+-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44557899999999999998887654 558899999999999999999987653
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.36 E-value=1.7e-06 Score=71.67 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+.++|++|+||||+|+.+++.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 82
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.6e-06 Score=76.10 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=43.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344557899999999999998876653 45689999999999999999988753
No 83
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.35 E-value=3.1e-06 Score=81.00 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=43.5
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+++||+.++..++..|.......+.++|++|+|||++|..++.+...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34679999999999999998776677789999999999999999998743
No 84
>PRK10536 hypothetical protein; Provisional
Probab=98.35 E-value=1.2e-05 Score=65.65 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEE
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVF 150 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w 150 (247)
....+.+|......++.++.+. ..+.+.|++|+|||+||..++.+.-....|+.++.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3455778899999999988765 59999999999999999999886332223554443
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=4.2e-06 Score=76.35 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+...+.|.+.+..++ ...+.++|+.|+||||+|+.+++.+-.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4445778999988888888887765 467778999999999999999988754
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5e-06 Score=76.16 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=44.1
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+...+.|.+++..++. ....++|+.|+||||+|+.+++.+-.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 445567899999999999999887654 55689999999999999999988653
No 87
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=72.49 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|....+++|.+.....|.+++..+.. ....++|+.|+||||+|+.++..+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457789999999999999987654 4567899999999999999998864
No 88
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.28 E-value=1.8e-05 Score=60.71 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=72.1
Q ss_pred cchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcccCCC------------------CEEEEEEeCCC--
Q 037337 98 SRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKNHKLF------------------DLVVFSEMSQS-- 156 (247)
Q Consensus 98 gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f------------------~~~~wv~~~~~-- 156 (247)
|.++..+.|.+.+..++. ..+.++|+.|+||+++|..+++.+-..... ....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456677778887777654 567999999999999999999986443221 12333332221
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 157 -PDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 157 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
...+++. .+...+..... .+++-++|+|+++.. .....+...+.....++++|++|.+.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2222222 33333322211 124678999999976 445566566655667899999888766
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.26 E-value=1.3e-05 Score=64.56 Aligned_cols=102 Identities=25% Similarity=0.233 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|||+.|+|||.|.+.+++.......-..++|++ ..++...+...+.. .....+.+.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~~-- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLRS-- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHCT--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhhc--
Confidence 45789999999999999999999876542222466764 44555555555533 113456666665
Q ss_pred cEEEEEeCCCCccc---hh-hhcccCC-CCCCCeEEEEeeCch
Q 037337 195 RILVILDNIWEHLD---LQ-VVGIPHG-DDHKGCKVLFTARSL 232 (247)
Q Consensus 195 r~LlvlDdv~~~~~---~~-~l~~~~~-~~~~~s~iiiTtR~~ 232 (247)
-=+|+|||++.... |. .+...+. ....|.++|+|+...
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 35899999986522 21 1212221 123467899999654
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.6e-05 Score=68.73 Aligned_cols=53 Identities=25% Similarity=0.205 Sum_probs=44.1
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+++|.+...+.|.+.+..++ .....++|+.|+||+++|..+++.+-.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 3345679999999999999888765 4568899999999999999999987543
No 91
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.26 E-value=2.8e-06 Score=67.58 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=72.5
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
|....+++|-++.+++|.-...+++.+-+.|.||+|+||||-+..+++.+-...+-+.+.-.++|..-.++-+-..|-..
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 33457899999999998887788888899999999999999999999998776545667777777766554443333111
Q ss_pred hCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 170 LGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 170 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
... +-.|..++.-++|||+.++.
T Consensus 103 AQ~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 AQK--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHh--------------hccCCCCceeEEEeeccchh
Confidence 100 00112335568889999876
No 92
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=4.4e-06 Score=74.86 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 92 GYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...++.|.+.+++.|.+.+.- ...+-+.++|++|+|||++|+.+++.+...
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 346677899988888776531 135678999999999999999999987543
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.7e-05 Score=71.54 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=42.6
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDIS-MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|....+++|.+...+.|..++..+... ...++|+.|+||||+|+.+++.+-
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 345577999999999999998876654 558999999999999999998864
No 94
>PRK05642 DNA replication initiation factor; Validated
Probab=98.25 E-value=4.3e-06 Score=68.06 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|||++|+|||.|++.+++..... -..++|++... +... ...+.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~- 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQY- 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhhC-
Confidence 3678999999999999999999877544 23467776432 2111 12234444432
Q ss_pred cEEEEEeCCCCc---cchhh-hcccCCC-CCCCeEEEEeeCch
Q 037337 195 RILVILDNIWEH---LDLQV-VGIPHGD-DHKGCKVLFTARSL 232 (247)
Q Consensus 195 r~LlvlDdv~~~---~~~~~-l~~~~~~-~~~~s~iiiTtR~~ 232 (247)
=+|++||+... ..|.. +...+.. ...|.++|+|++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 26789999743 23322 3233321 23466788888753
No 95
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.6e-05 Score=73.31 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=76.3
Q ss_pred CCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 91 KGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
.....++|.+.....|..++..++ ...+.++|+.|+||||+|+.+++.+-..... .... ......+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~~----~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPTP----EPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCCC----CCCcccHHHHHHhcC
Confidence 345678999999999999988764 3677899999999999999999987543111 0000 011112222233222
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHc----CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCc
Q 037337 170 LGLTF-----REESESGRARSLFSRLN----REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 170 l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
...+. ......+.+..+.+.+. .+++-++|+|+++.. .....+...+......+.+|++|.+
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 21110 01111222333333331 134568899999876 3455554555444455656555543
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=6e-06 Score=71.06 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=44.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|.....++|.++..+.|...+..+. ...+.++|+.|+||||+|..+++.+-.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3445678999999999999988665 457889999999999999999998765
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.3e-05 Score=71.43 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=43.6
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+..+..|.+++..+.. ....++|++|+||||+|+.+++.+-.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34557899999999999999886654 56789999999999999999998643
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.1e-05 Score=71.91 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=44.4
Q ss_pred cccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 88 MSNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+.|....+++|.+...+.|.+++..+. .....++|+.|+|||++|+.+++.+-.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345556789999999999999997664 455678999999999999999988653
No 99
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=3.2e-06 Score=79.38 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=64.1
Q ss_pred CcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccC-C---CCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHK-L---FDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
..+++||+.++..+++.|......-+.++|++|+|||++|+.++....... . .++.+|.. +...+ ..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 456999999999999988876556677999999999999999998764321 1 13444421 11111 10
Q ss_pred HhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 169 KLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 169 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+.. .....+.....+.+.+...++.+|+||+++..
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L 290 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHH
Confidence 110 01122333444555554435689999999743
No 100
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.2e-05 Score=74.54 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=43.0
Q ss_pred cCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+..++.|.+++..++ .....++|+.|+|||++|+.+++.+-.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4445779999999999999998765 455678999999999999999987643
No 101
>PRK06526 transposase; Provisional
Probab=98.22 E-value=5.4e-06 Score=68.18 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.++|++|+|||+||..++......+ + .+.|+ +..+++..+..... .... ...+ ..+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~~~~---~~~l-~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----AGRL---QAEL-VKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----cCcH---HHHH-HHhc--c
Confidence 35689999999999999999998875442 2 23342 34455555543321 1111 1122 2232 2
Q ss_pred cEEEEEeCCCCc
Q 037337 195 RILVILDNIWEH 206 (247)
Q Consensus 195 r~LlvlDdv~~~ 206 (247)
.-+|||||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 368999999754
No 102
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.7e-05 Score=67.43 Aligned_cols=119 Identities=14% Similarity=0.064 Sum_probs=73.9
Q ss_pred cccchHHHHHHHHHhcC-CC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCC-------------------CCEEEEEEeC
Q 037337 96 FESRMSTLNDILGALRN-PD-ISMLGICGMGGIGKTMLEKEVARKAKNHKL-------------------FDLVVFSEMS 154 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~~-~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~ 154 (247)
++|-+.....+..+... .+ ...+.++|++|+||||+|..+++.+-.... .+.+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 45667777778887763 33 345999999999999999999998764421 1334445544
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEee
Q 037337 155 QSPD---IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHL--DLQVVGIPHGDDHKGCKVLFTA 229 (247)
Q Consensus 155 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~s~iiiTt 229 (247)
.... ..+..+.+.+....... .++.-++++|+++... .-..+...+......+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4443 23334444433332211 1356788999998762 2344444444456677787777
Q ss_pred C
Q 037337 230 R 230 (247)
Q Consensus 230 R 230 (247)
.
T Consensus 147 n 147 (325)
T COG0470 147 N 147 (325)
T ss_pred C
Confidence 6
No 103
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.22 E-value=1.3e-05 Score=66.45 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..++++..++..+ ..+.++|++|+|||+||+.++..... ..+++++....+..+++.
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHhh
Confidence 4455566666654 56779999999999999999975432 245667776666555543
No 104
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.4e-05 Score=72.10 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=42.3
Q ss_pred CCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+++|.+...+.|..++..+.. ....++|+.|+||||+|+.++..+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457799999999999999987654 4578999999999999999998764
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=5.4e-06 Score=67.11 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=38.4
Q ss_pred Ccccc-cchHHH-HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 93 YEAFE-SRMSTL-NDILGALRN-PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 93 ~~~~~-gR~~~~-~~L~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..+|+ |+.... ..+.++... .....+.|+|++|+|||+||+.+++.....+ ....++++..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~ 80 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAAS 80 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHH
Confidence 34444 443333 444444432 3456889999999999999999999864431 2355665433
No 106
>CHL00181 cbbX CbbX; Provisional
Probab=98.18 E-value=2.2e-05 Score=65.83 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+.++|++|+|||++|+.+++....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999987643
No 107
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.18 E-value=2.6e-05 Score=67.02 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCChH
Q 037337 104 NDILGALRN-PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL-VVFSEMSQ-SPDIRKVQGEIADKLGLTFREESES 180 (247)
Q Consensus 104 ~~L~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~ 180 (247)
.++++.+.. ..-..+.|+|++|+|||||++.+++..... +.+. .+|+.+.. ..++.+++..++..+..+....+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346665552 233567899999999999999999987654 2333 36666654 4577888888888776554322221
Q ss_pred H------HHHHHHHHH-cCCCcEEEEEeCCCC
Q 037337 181 G------RARSLFSRL-NREKRILVILDNIWE 205 (247)
Q Consensus 181 ~------~~~~l~~~l-~~~kr~LlvlDdv~~ 205 (247)
. ......+++ ..+++++||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 222333444 456889999999864
No 108
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.17 E-value=6.1e-06 Score=64.26 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=45.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
..-+.++|++|+|||.||..+++.....+ + .+.|++ ..+++..+-. ....... ..+.+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~----~~~~~~~----~~~~~~l~~-- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQ----SRSDGSY----EELLKRLKR-- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHC----CHCCTTH----CHHHHHHHT--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccc----cccccch----hhhcCcccc--
Confidence 36799999999999999999999876642 3 356664 3455544432 2222222 233444544
Q ss_pred cEEEEEeCCCCc
Q 037337 195 RILVILDNIWEH 206 (247)
Q Consensus 195 r~LlvlDdv~~~ 206 (247)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 358889998654
No 109
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.16 E-value=2e-05 Score=64.82 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHH
Q 037337 104 NDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRA 183 (247)
Q Consensus 104 ~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 183 (247)
..+.+++. +..-+.++|++|+|||.||..+++.+. +..+ .+.|+ +..+++..|....... ...
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~------~~~el~~~Lk~~~~~~-------~~~ 158 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFI------TAPDLLSKLKAAFDEG-------RLE 158 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEE------EHHHHHHHHHHHHhcC-------chH
Confidence 33455555 457889999999999999999999988 4223 34554 4566777776666431 112
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCc
Q 037337 184 RSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 184 ~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
..+.+.+.. -=||||||+-..
T Consensus 159 ~~l~~~l~~--~dlLIiDDlG~~ 179 (254)
T COG1484 159 EKLLRELKK--VDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhhc--CCEEEEecccCc
Confidence 334443433 359999998653
No 110
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3e-05 Score=70.71 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=44.1
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPDI-SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|....+++|.+..+..|..++.++.. ....++|+.|+||||+|+.+++.+-.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 344557899999999999999987654 46789999999999999999998653
No 111
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.2e-05 Score=71.66 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=65.6
Q ss_pred CcccccchHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALR------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
..+-.|-++..+++++.|. +-+-+++.++||||+|||+|++.+++..... | +-++++.-.+..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcc--
Confidence 4456788888888888874 2245899999999999999999999988765 3 3345555555444211
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 167 ADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.....-+.-+...++.+.+. +.++-+++||+++..
T Consensus 395 ---HRRTYIGamPGrIiQ~mkka--~~~NPv~LLDEIDKm 429 (782)
T COG0466 395 ---HRRTYIGAMPGKIIQGMKKA--GVKNPVFLLDEIDKM 429 (782)
T ss_pred ---ccccccccCChHHHHHHHHh--CCcCCeEEeechhhc
Confidence 11111122233344444443 235689999999854
No 112
>PRK09087 hypothetical protein; Validated
Probab=98.15 E-value=7.5e-06 Score=66.25 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+.+.|||++|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988754
No 113
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.14 E-value=8.8e-06 Score=64.42 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=63.2
Q ss_pred ccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC--CCH----HH-------HH
Q 037337 97 ESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS--PDI----RK-------VQ 163 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~----~~-------l~ 163 (247)
.++..+....++.|. ...++.+.|++|+|||.||...+-+.-....|+.++++.-.-. .++ .+ .+
T Consensus 3 ~p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ---SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred cCCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 345566677777776 4479999999999999999999987655567888887733221 100 00 11
Q ss_pred HHHHHHhCCCCCCCChHHHHHH------HHHHHcC--CCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 164 GEIADKLGLTFREESESGRARS------LFSRLNR--EKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~------l~~~l~~--~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
.-+...+..-..........+. -..++++ =+..+||+|++++. .++..+ +-..+.+|++|++--...
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE----
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCcee
Confidence 1122222211111111111110 0011111 12488999999886 345444 334578999999865444
Q ss_pred h
Q 037337 234 V 234 (247)
Q Consensus 234 v 234 (247)
+
T Consensus 158 ~ 158 (205)
T PF02562_consen 158 I 158 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 114
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.13 E-value=2.6e-05 Score=59.09 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
++.|+|++|+|||+++..++...... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36799999999999999999987653 35678887765543
No 115
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.12 E-value=1.5e-05 Score=69.94 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC
Q 037337 98 SRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLTFRE 176 (247)
Q Consensus 98 gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~~ 176 (247)
.|...+.++.+.+..... ++.|+|+.++||||+++.+....... .++++..+.. +..++ .+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~---------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDL---------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHH----------
Confidence 345666667776665544 99999999999999996666554432 4555433322 21121 111
Q ss_pred CChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 177 ESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 177 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
...+.+.-.. ++.+++||+|+....|......+.+.++. +|++|+-+..+..
T Consensus 84 ------~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 84 ------LRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred ------HHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 1111111122 46899999999999998876777666666 8999998877754
No 116
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.12 E-value=0.00012 Score=62.52 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..+.++|++|+|||+||..+++...... -.++|+++ .+++..+..... ... ... . ...+.+.. -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~------~~l~~~l~~~~~-~~~-~~~---~-~~~~~l~~--~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA------DELIEILREIRF-NND-KEL---E-EVYDLLIN--C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH------HHHHHHHHHHHh-ccc-hhH---H-HHHHHhcc--C
Confidence 7799999999999999999999886552 24667643 344444433211 100 111 1 11344444 2
Q ss_pred EEEEEeCCCCc--cch--hhhcccCCC-CCCCeEEEEeeCc
Q 037337 196 ILVILDNIWEH--LDL--QVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 196 ~LlvlDdv~~~--~~~--~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
=||||||+... ..| ..+...+.. ...+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999543 222 222222221 1224457888764
No 117
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.10 E-value=2e-05 Score=62.86 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-CC---C---CCCCCh---HHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL-GL---T---FREESE---SGRAR 184 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-~~---~---~~~~~~---~~~~~ 184 (247)
..++.|+|++|+|||+|+.+++...... ...++|++... ++...+.+ ++... .. . .+..+. .....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5789999999999999999998876544 45789998875 55555443 33221 00 0 001121 22345
Q ss_pred HHHHHHcCCCcEEEEEeCCCC
Q 037337 185 SLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 185 ~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.+.+.+...+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 555555443457899999864
No 118
>PRK09183 transposase/IS protein; Provisional
Probab=98.09 E-value=8.7e-05 Score=61.32 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..+.|+|++|+|||+||..++......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999998875443
No 119
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=6.1e-06 Score=75.82 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred ccCCCcccccchHHHHHHHHHhcCC-----CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNP-----DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|....+++|.++.++.+..|+... ...++.|+|++|+||||+++.++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455678999999999999988642 345799999999999999999998764
No 120
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.08 E-value=2.6e-05 Score=65.30 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.-+.++|++|+|||++|+.+++.....
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 368899999999999999988876543
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=1.4e-05 Score=76.25 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=61.8
Q ss_pred CcccccchHHHHHHHHHhc-------CC--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 93 YEAFESRMSTLNDILGALR-------NP--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
...++|.+..++.+.+.+. ++ +..++.++|++|+|||.||+.++..+-.. ....+-++++.....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----
Confidence 3568899998888877763 11 23468899999999999999999886433 222333343322111
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
..+.+.+|.+....... ....+.+.++.....+|+||+++..
T Consensus 639 ~~~~~l~g~~~gyvg~~-~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYG-EGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhhccccCCCCCccccc-ccchHHHHHHhCCCcEEEEechhhc
Confidence 11222233322211110 0112444554446689999999865
No 122
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=3.2e-05 Score=62.00 Aligned_cols=35 Identities=34% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.+.+...+...++|+|.+|+||||||..+++..-
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44445555566799999999999999999998753
No 123
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.05 E-value=3e-05 Score=62.81 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM 153 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 153 (247)
-.++|.|.+|+|||+|+..+....... |+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 467899999999999999999887766 877776644
No 124
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.05 E-value=0.00017 Score=60.32 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=49.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLTFREE-SESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~~ 192 (247)
..+++++|++|+||||++..++..+.....-..+..++..... ...+-+....+.++.+.... +... .....+.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~-l~~~l~~~~~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE-LRKALDRLRD 272 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHH-HHHHHHHccC
Confidence 4689999999999999999999887543111245666655432 12233333444455443322 2233 3333344433
Q ss_pred CCcEEEEEeCC
Q 037337 193 EKRILVILDNI 203 (247)
Q Consensus 193 ~kr~LlvlDdv 203 (247)
.=+|++|..
T Consensus 273 --~d~vliDt~ 281 (282)
T TIGR03499 273 --KDLILIDTA 281 (282)
T ss_pred --CCEEEEeCC
Confidence 357777753
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=7.1e-05 Score=60.50 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=73.8
Q ss_pred cCCCcccccchHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC--CCHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILG----ALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS--PDIRKVQ 163 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~----~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~ 163 (247)
+.+...++|-+.+.+.|.+ ++...+..-+.+||..|+|||+|++.+.+.+..+. .--|.+... .+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~~----- 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLGD----- 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhcc-----
Confidence 3455779998888887755 34455677888999999999999999999888763 222333321 12
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHc-CCCcEEEEEeCCCCc---cchhhhcccC----CCCCCCeEEEEeeCchhhh
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLN-REKRILVILDNIWEH---LDLQVVGIPH----GDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~---~~~~~l~~~~----~~~~~~s~iiiTtR~~~va 235 (247)
+..+.+.|. ...|++|.+||+.=. .....+...+ ...+.+..|..||..+.+.
T Consensus 94 -------------------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 -------------------LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------------HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 222333332 235799999998522 2233332222 2335567677777666555
Q ss_pred h
Q 037337 236 S 236 (247)
Q Consensus 236 ~ 236 (247)
.
T Consensus 155 ~ 155 (249)
T PF05673_consen 155 P 155 (249)
T ss_pred c
Confidence 4
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=1.2e-05 Score=71.48 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|+|..|+|||+|++.+++.+.....-..++|++ ..++...+...++.. ......+.+.+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~~-- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEICQ-- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhcc--
Confidence 45689999999999999999999765432223456654 345666666665421 0223444454443
Q ss_pred cEEEEEeCCCCcc---c-hhhhcccCCC-CCCCeEEEEeeCc
Q 037337 195 RILVILDNIWEHL---D-LQVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 195 r~LlvlDdv~~~~---~-~~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
.-+|+|||+.... . .+.+...+.. ...+..||+||..
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 3588999997542 1 2233232221 1334568888754
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.04 E-value=3.3e-05 Score=72.95 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=60.6
Q ss_pred cccccchHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRN-------P--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..++|.+..++.+.+.+.. + ....+.++|++|+|||.||+.+++.+.. ..+.++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcc----
Confidence 4577888888887776641 1 2345789999999999999999987732 24555554432211
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.+...++.+...... +....+.+.+......+|+||+++..
T Consensus 525 ~~~~lig~~~gyvg~-~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVGF-EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCccc-chhhHHHHHHHhCCCeEEEEechhhc
Confidence 112223322111111 11223445554445579999999865
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=98.03 E-value=3.7e-06 Score=64.82 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCEEEE
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH-KLFDLVVF 150 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 150 (247)
..|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999997654 34677775
No 129
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.02 E-value=5.9e-05 Score=71.68 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=38.0
Q ss_pred cccccchHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 94 EAFESRMSTLNDILGALR------NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++|.+...+.+.+++. ..+...+.++|++|+|||++|+.+++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 447788888888877653 1134578999999999999999999987543
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.02 E-value=3.2e-05 Score=74.05 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=61.1
Q ss_pred cccccchHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRN-------P--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..++|.+..++.+...+.. + +...+.++|++|+|||+||+.+++..-.. ....+.++++..... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---
Confidence 4588999888888777641 1 12468899999999999999999876433 223455555433211 1
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.+.+.+|.+........ ...+.+.+.....-+|+||+++..
T Consensus 642 ~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhC
Confidence 12222343222111111 122344443333478999999855
No 131
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00013 Score=66.62 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred CcccccchHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALR------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
..+-.|-++..+++++++. +-+-.++..+||+|+|||++|+.+++.+..+ | +-++++.-.+..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhccc-
Confidence 4556777888888888774 2246899999999999999999999988755 3 34566766666553211
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 167 ADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
....-+.-+...++.|... +. .+-|+.||+|+..
T Consensus 484 ----RRTYVGAMPGkiIq~LK~v-~t-~NPliLiDEvDKl 517 (906)
T KOG2004|consen 484 ----RRTYVGAMPGKIIQCLKKV-KT-ENPLILIDEVDKL 517 (906)
T ss_pred ----ceeeeccCChHHHHHHHhh-CC-CCceEEeehhhhh
Confidence 1111112223333333332 22 3578899998854
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.02 E-value=2.8e-05 Score=74.56 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=63.2
Q ss_pred CcccccchHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRNP---------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
...++|.+..++.+...+... ....+.++|++|+|||++|+.++...... ....+.++++.......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch--
Confidence 345889999998888877521 13567899999999999999999876543 22345566554322111
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+...+|.+....... ....+.+.+......+|+||+++..
T Consensus 640 --~~~l~g~~~g~~g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 --VARLIGAPPGYVGYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHHhcCCCCCccCcc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 112223222111110 0123444443334468999999865
No 133
>PRK04296 thymidine kinase; Provisional
Probab=98.01 E-value=1.2e-05 Score=63.32 Aligned_cols=112 Identities=18% Similarity=0.097 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHcC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE---ESESGRARSLFSRLNR 192 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 192 (247)
.++.++|+.|.||||++..++.+.... ...++++. +..+.......++..++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999988654 22334342 1112122233455555543322 223333444443 23
Q ss_pred CCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 193 EKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 193 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
++.-+||+|++.-. +++..+...+ ...|..|++|.++.+..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcccc
Confidence 34458999999653 2233332221 34688899999996653
No 134
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.01 E-value=5.3e-05 Score=61.53 Aligned_cols=90 Identities=22% Similarity=0.172 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCh-
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKL----FDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESE- 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~- 179 (247)
..++.|+|++|+|||+|+.+++........ ...++|++....++..++ .+++..++.... ..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999865432211 256899998877665544 333444332211 0112
Q ss_pred --HHHHHHHHHHHcCC-CcEEEEEeCCCC
Q 037337 180 --SGRARSLFSRLNRE-KRILVILDNIWE 205 (247)
Q Consensus 180 --~~~~~~l~~~l~~~-kr~LlvlDdv~~ 205 (247)
......+.+.+... +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 23334555556554 678999999864
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=2.8e-05 Score=69.08 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|||++|+|||+|++.+++.......-..++|+++ .++...+...+... + ...+.+.+.. +
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~~-~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRK-K 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHHh-c
Confidence 456999999999999999999998765421124677754 34555555555321 1 1223333332 2
Q ss_pred cEEEEEeCCCCccc---h-hhhcccCCC-CCCCeEEEEeeC
Q 037337 195 RILVILDNIWEHLD---L-QVVGIPHGD-DHKGCKVLFTAR 230 (247)
Q Consensus 195 r~LlvlDdv~~~~~---~-~~l~~~~~~-~~~~s~iiiTtR 230 (247)
.-+|+|||++.... . ..+...+.. ...|..||+||.
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 45899999985421 1 122222211 123456888874
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.4e-05 Score=69.21 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=61.5
Q ss_pred CcccccchHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH
Q 037337 93 YEAFESRMSTLNDILGALR---N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 160 (247)
..++=|-+..+.+|.+.+. . ..++-|.++|++|+|||.||+.++.++.+. | +.++...
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isApe--- 258 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAPE--- 258 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecchh---
Confidence 4456778888877766553 1 246789999999999999999999988875 3 3332221
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 161 KVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 161 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+ ... .. ...++.+..+++...+.-++++++|+++-.
T Consensus 259 -i----vSG----vS-GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 259 -I----VSG----VS-GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -h----hcc----cC-cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 1 111 11 122344555665555557899999999843
No 137
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.00 E-value=3.1e-05 Score=67.78 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=56.2
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-+...++|.+.+. . ...+-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh------
Confidence 3457788777777766542 1 235779999999999999999999876543 2 22211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.++... ..+ ........+........+.+|+||+++.
T Consensus 213 s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 213 SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 111111 111 1122334444444444679999999874
No 138
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.99 E-value=2.9e-05 Score=70.18 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=35.8
Q ss_pred CCCcccccchHHHHHHHHH---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGA---LRN---------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~---L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....++.|-+...+.+.+. +.. ...+-+.++|++|+|||+||+.+++....
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456678877665555443 321 22456889999999999999999987643
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.99 E-value=1.9e-05 Score=69.51 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|+|++|+|||+|++.+++.......-..++|+++ .++...+...+... . ...+.+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~----~~~~~~~~~~-- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----K----MEEFKEKYRS-- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----C----HHHHHHHHHh--
Confidence 457899999999999999999998765421134667643 34444454444321 1 2334444443
Q ss_pred cEEEEEeCCCCccc---h-hhhcccCCC-CCCCeEEEEeeCc
Q 037337 195 RILVILDNIWEHLD---L-QVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 195 r~LlvlDdv~~~~~---~-~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
.-+|+|||++.... + +.+...+.. ...+..+|+||..
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 24888999986421 1 122222211 1235567887754
No 140
>CHL00176 ftsH cell division protein; Validated
Probab=97.99 E-value=5e-05 Score=70.19 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=34.2
Q ss_pred CcccccchHHHHHH---HHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDI---LGALRNP---------DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L---~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++.|.++..+.+ ..++... ..+-+.++|++|+|||+||+.++.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45577766555544 4444322 2456899999999999999999987643
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.99 E-value=2.7e-05 Score=73.21 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=60.7
Q ss_pred cccccchHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRN---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..++|.++.++.|.+.+.. .....+.++|++|+|||.||+.++..+.. ..+.++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----
Confidence 3478888888888777651 12356889999999999999999988742 13445554332211
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.+.+.+|.+...... .....+.+.+......+|+||+++..
T Consensus 529 ~~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 TVSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred cHHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhh
Confidence 122233432111110 11122344444434579999999876
No 142
>PRK06921 hypothetical protein; Provisional
Probab=97.98 E-value=3.3e-05 Score=64.02 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=45.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
....+.++|++|+|||+||..+++....+. ...++|++. .+++..+...+ .......+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~~- 177 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMKK- 177 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhcC-
Confidence 357799999999999999999999876431 234567653 33344433322 011223344443
Q ss_pred CcEEEEEeCCC
Q 037337 194 KRILVILDNIW 204 (247)
Q Consensus 194 kr~LlvlDdv~ 204 (247)
--||||||+.
T Consensus 178 -~dlLiIDDl~ 187 (266)
T PRK06921 178 -VEVLFIDDLF 187 (266)
T ss_pred -CCEEEEeccc
Confidence 3699999993
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.98 E-value=4.7e-05 Score=72.81 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=62.2
Q ss_pred CcccccchHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRN-------P--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
...++|.+..++.+...+.. + +.....++|++|+|||+||+.+++.+-.. -...+.++.+.......
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc--
Confidence 45688999988888777641 1 12456789999999999999999876433 12344455544322111
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+...+|.+...... .....+.+.+......+++||+++..
T Consensus 584 --~~~l~g~~~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 --VSKLIGSPPGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHHhcCCCCcccCc-CccchHHHHHHhCCCeEEEECChhhC
Confidence 11222322111110 01123445554444578999999865
No 144
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.97 E-value=0.001 Score=54.32 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=54.1
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCh
Q 037337 102 TLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESE 179 (247)
Q Consensus 102 ~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 179 (247)
.+..+.++..+ .....+.++|.+|+|||+||..+++.+... -..+++++ ..+++..+-..+.. ...+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~~- 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SETS- 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cccc-
Confidence 34444444432 223578999999999999999999988654 23456663 45555555444421 1111
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 180 SGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 180 ~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
...+.+.+.. .=+|||||+...
T Consensus 153 ---~~~~l~~l~~--~dlLvIDDig~~ 174 (244)
T PRK07952 153 ---EEQLLNDLSN--VDLLVIDEIGVQ 174 (244)
T ss_pred ---HHHHHHHhcc--CCEEEEeCCCCC
Confidence 2234445544 358889999654
No 145
>PRK07261 topology modulation protein; Provisional
Probab=97.96 E-value=5e-05 Score=58.76 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH-KLFDLVVFSEMSQSPDIRKVQGEIADKL 170 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~l~~~i~~~l 170 (247)
.|.|+|++|+||||||+.++...... -+.|...|-.-....+..++...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 47899999999999999998876432 1245566643323334444444443333
No 146
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=9.2e-05 Score=63.35 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=36.3
Q ss_pred ccc-chHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 96 FES-RMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 96 ~~g-R~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++| .+...+.|...+..++ .....++|+.|+|||++|..+++..-.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 455 6667777888776655 456689999999999999999988643
No 147
>PRK12377 putative replication protein; Provisional
Probab=97.95 E-value=0.00098 Score=54.62 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=48.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.++|++|+|||+||..+++.+... .-.+.|+++ .+++..+-...... .+ ...+.+.+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~---~~----~~~~l~~l~~-- 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG---QS----GEKFLQELCK-- 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc---ch----HHHHHHHhcC--
Confidence 4678999999999999999999998754 223566643 35555554444211 11 2234444544
Q ss_pred cEEEEEeCCCC
Q 037337 195 RILVILDNIWE 205 (247)
Q Consensus 195 r~LlvlDdv~~ 205 (247)
--||||||+..
T Consensus 164 ~dLLiIDDlg~ 174 (248)
T PRK12377 164 VDLLVLDEIGI 174 (248)
T ss_pred CCEEEEcCCCC
Confidence 47999999943
No 148
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.94 E-value=6.1e-05 Score=63.79 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
-+++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+ ..+.++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999998876544 3457788776655542 3455554321 1233444444444
Q ss_pred HHcCCCcEEEEEeCCCC
Q 037337 189 RLNREKRILVILDNIWE 205 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~ 205 (247)
.+..+..-+||+|.+..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 44555567999999764
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.93 E-value=3.4e-05 Score=68.85 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=48.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|+|++|+|||+|++.+++.......-..++|+++. ++...+...+... . ...+.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~----~~~~~~~~~~-- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN----T----MEEFKEKYRS-- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC----c----HHHHHHHHhc--
Confidence 4678999999999999999999998754212346676543 3334444444211 1 2334444443
Q ss_pred cEEEEEeCCCCc
Q 037337 195 RILVILDNIWEH 206 (247)
Q Consensus 195 r~LlvlDdv~~~ 206 (247)
.-+|+|||++..
T Consensus 212 ~dlLiiDDi~~l 223 (450)
T PRK00149 212 VDVLLIDDIQFL 223 (450)
T ss_pred CCEEEEehhhhh
Confidence 358899999754
No 150
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.93 E-value=2.6e-06 Score=72.99 Aligned_cols=115 Identities=26% Similarity=0.385 Sum_probs=82.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLF-DLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
.+.+.++|+||+||||++-.+.+ .... | +.+.++.+.+-.+...+.-.+...++.+.... +.....+...+..
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~- 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD- 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh-
Confidence 48899999999999999999999 5544 5 55778888888888888888888787664332 2234455666656
Q ss_pred CcEEEEEeCCCCccc-hhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 194 KRILVILDNIWEHLD-LQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 194 kr~LlvlDdv~~~~~-~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
+|.++++||+.+..+ -..+...+..++...+++.|+|+....
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~ 130 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV 130 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc
Confidence 689999999987633 222223334456667788999876543
No 151
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.9e-05 Score=67.26 Aligned_cols=93 Identities=26% Similarity=0.377 Sum_probs=57.8
Q ss_pred cccccc---hHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 94 EAFESR---MSTLNDILGALRNPD---------ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 94 ~~~~gR---~~~~~~L~~~L~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
.+.-|- .+|++++.++|.++. ++-|.++|++|.|||-||+.++....+. | |...++.++ +
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd--E 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD--E 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh--h
Confidence 344454 457788888887641 5778999999999999999999877665 2 333333332 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 162 VQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 162 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++-. .| ...+..|....+..-+|+|.+|+++..
T Consensus 376 m~VG----vG--------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 MFVG----VG--------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhhc----cc--------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1111 11 112233333333445799999999854
No 152
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.92 E-value=3e-05 Score=65.53 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 037337 98 SRMSTLNDILGALRN----PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT 173 (247)
Q Consensus 98 gR~~~~~~L~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 173 (247)
+|........+++.. ....-+.++|+.|+|||.||..+++.+... .+. +.|+++ .+++..+...++.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhc-
Confidence 444444444555542 134679999999999999999999998754 233 455543 3566666555532
Q ss_pred CCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhh--hcccC-CCC-CCCeEEEEeeC
Q 037337 174 FREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQV--VGIPH-GDD-HKGCKVLFTAR 230 (247)
Q Consensus 174 ~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~--l~~~~-~~~-~~~s~iiiTtR 230 (247)
.+ .....+.+.. -=||||||+... ..|.. +...+ ... ..+..+|+||.
T Consensus 206 ---~~----~~~~l~~l~~--~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ---GS----VKEKIDAVKE--APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---Cc----HHHHHHHhcC--CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11 2233444444 469999999643 34532 22222 211 23455778876
No 153
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.91 E-value=7.2e-05 Score=63.42 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+ ..+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4788999999999999999998876544 3457898876665543 3444543311 1234444444444
Q ss_pred HHcCCCcEEEEEeCCCC
Q 037337 189 RLNREKRILVILDNIWE 205 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~ 205 (247)
.+..+.--+||+|.+..
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 44555668999999753
No 154
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=0.00011 Score=58.19 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGL 172 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~ 172 (247)
++++.++|+.|+||||.+.+++.....+ -..+..+++.... ...+-++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 3689999999999999999999988766 3456677665432 223334455555553
No 155
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.89 E-value=4.4e-05 Score=69.77 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
..++..++|++|.||||||+-++++..- .++=+++|..-+...+-..|...+....-.. .+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 4689999999999999999999987542 3677899998888877777766664321110 123
Q ss_pred CcEEEEEeCCCCc
Q 037337 194 KRILVILDNIWEH 206 (247)
Q Consensus 194 kr~LlvlDdv~~~ 206 (247)
++.-||+|+++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 6788889998865
No 156
>PHA02244 ATPase-like protein
Probab=97.89 E-value=0.00015 Score=62.30 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 104 NDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 104 ~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+..++..+ ..|.|+|++|+|||+||+.+++....
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455555544 45778999999999999999998543
No 157
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.89 E-value=0.00017 Score=59.55 Aligned_cols=90 Identities=26% Similarity=0.250 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
..+.=|+|++|+|||.|+.+++-..... ..-..++|++....++..++. +|++..+...+ ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4788999999999999999998765422 112459999999999887764 56666543311 01222
Q ss_pred ---HHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 ---GRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ---~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
..+..+...+...+=-|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 2333444444444567999999853
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.88 E-value=2.2e-05 Score=69.28 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++.|.+.+++.|.+.+. . .....+.++|++|+|||++|+.+++.....
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3456788888888877653 1 134678899999999999999999976543
No 159
>PRK09354 recA recombinase A; Provisional
Probab=97.88 E-value=0.0001 Score=63.04 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+ ..+.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999998876544 3457899887766643 3455554321 1234444444444
Q ss_pred HHcCCCcEEEEEeCCCC
Q 037337 189 RLNREKRILVILDNIWE 205 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~ 205 (247)
.+..+..-+||+|.+..
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 45555668999999864
No 160
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0005 Score=58.94 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=74.5
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-----CCHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-----PDIRKVQG 164 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~ 164 (247)
+.....++.|...-+.+.+.+.++ ...+.|.|+..+|||+|...+.+..+..+ + ..+++++... .+...+++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~-~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQG-Y-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCC-C-EEEEEEeecCCCcccCCHHHHHH
Confidence 344566889986667777777653 36889999999999999999999887652 4 3557777642 34555555
Q ss_pred HHHHH----hCCCCC--------CCChHHHHHHHHHHH--cCCCcEEEEEeCCCCc
Q 037337 165 EIADK----LGLTFR--------EESESGRARSLFSRL--NREKRILVILDNIWEH 206 (247)
Q Consensus 165 ~i~~~----l~~~~~--------~~~~~~~~~~l~~~l--~~~kr~LlvlDdv~~~ 206 (247)
.++.. ++.... ..+.......+.+.+ ...++.+|+||+++..
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 55544 443321 112223333444443 2246899999999865
No 161
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.87 E-value=0.00024 Score=57.92 Aligned_cols=111 Identities=12% Similarity=0.191 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF------------------- 174 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~------------------- 174 (247)
..+++.|.|++|+|||+||.++....-.. -..++|++... +..++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccc
Confidence 35889999999999999999987764322 34678887654 4455555432 332210
Q ss_pred ------------CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccc---------hhhhcccCCCCCCCeEEEEeeCc
Q 037337 175 ------------REESESGRARSLFSRLNREKRILVILDNIWEHLD---------LQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 175 ------------~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---------~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
+..+..+....+.+.+...+.-++|+|.+..... +..+...+ ...|+.+++|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~l--k~~~~t~llt~~~ 170 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVL--SGLGCTSIFVSQV 170 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHH--HhCCCEEEEEECc
Confidence 1123445556666666443445799999865311 11121111 3557778888653
No 162
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.87 E-value=0.00018 Score=65.64 Aligned_cols=135 Identities=21% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCcccccchHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHhcc---c---CCCCEEEEEEeCCCCCHH
Q 037337 92 GYEAFESRMSTLNDILGALR----N-PDISMLGICGMGGIGKTMLEKEVARKAKN---H---KLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~---~~f~~~~wv~~~~~~~~~ 160 (247)
-|..+-+|+.+..+|..++. + ...+++.|.|.+|+|||.++..|.+.++. + ..|+ .+.++.-.-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 35667789999999877764 3 23459999999999999999999997652 1 1232 4556666667799
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHc----CCCcEEEEEeCCCCccc--hhhhcccCCC-CCCCeEEEEee
Q 037337 161 KVQGEIADKLGLTFREESESGRARSLFSRLN----REKRILVILDNIWEHLD--LQVVGIPHGD-DHKGCKVLFTA 229 (247)
Q Consensus 161 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~~--~~~l~~~~~~-~~~~s~iiiTt 229 (247)
+++..|...+....... ...++.|..+.. ..+.++|++|+++.... -+-++..|.| ...+|+++|.+
T Consensus 473 ~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999886543322 233455555552 23568888999886532 2334444543 35677776654
No 163
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.87 E-value=0.0002 Score=57.76 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK----LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
..++.|+|++|+|||+||..++....... .-..++|++....++...+ ..++...+.... ..+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHH
Confidence 47999999999999999999987754331 0146789988776665544 333443322110 12333
Q ss_pred HHHHHHHHHH---cCCCcEEEEEeCCCC
Q 037337 181 GRARSLFSRL---NREKRILVILDNIWE 205 (247)
Q Consensus 181 ~~~~~l~~~l---~~~kr~LlvlDdv~~ 205 (247)
+....+.+.. ...+.-+||+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 3333333333 244557999999864
No 164
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00049 Score=61.80 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM 153 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 153 (247)
..+++|+|++|+||||++.+++..+........+.+++.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 579999999999999999999887654321233555544
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.001 Score=62.21 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=65.1
Q ss_pred CcccccchHHHHHHHHHhc-------C--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 93 YEAFESRMSTLNDILGALR-------N--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
....+|.++.+..+.+.+. + .+.......||.|+|||.||+.++..+-... +..+-++.|.... -
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E----k 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYME----K 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH----H
Confidence 4568999999999888775 1 2345667799999999999999998875431 2233333333211 1
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
..+.+.+|.++....-++ --.|-+..+++.-.+|.||+++..
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 334445555443221111 233455555533347779999865
No 166
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=3.5e-05 Score=64.22 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH--KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 192 (247)
.++|.++||||+|||+|++.++..+..+ ..|..-.-+.+.. ..++...+..-| .-.....+.+.+.+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg-----KlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG-----KLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh-----hHHHHHHHHHHHHHhC
Confidence 5889999999999999999999998653 2233222232221 233333222211 1112334455555544
Q ss_pred CCc-EEEEEeCCCCc
Q 037337 193 EKR-ILVILDNIWEH 206 (247)
Q Consensus 193 ~kr-~LlvlDdv~~~ 206 (247)
.+. +++.+|+|++.
T Consensus 248 ~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESL 262 (423)
T ss_pred CCcEEEEEeHHHHHH
Confidence 332 44458998754
No 167
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2e-05 Score=57.02 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|.|.|++|+||||+|+.+++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999999863
No 168
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.81 E-value=0.00012 Score=59.16 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH-----hCC--CCCCCChH---HHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK-----LGL--TFREESES---GRAR 184 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-----l~~--~~~~~~~~---~~~~ 184 (247)
..++.|+|++|+|||+||.+++...... ...++|++.. ..+...+. +++.. +.. -....+.. ..+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 4789999999999999999999876544 3568899887 55544432 33322 100 00111222 2233
Q ss_pred HHHHHHcCCCcEEEEEeCCC
Q 037337 185 SLFSRLNREKRILVILDNIW 204 (247)
Q Consensus 185 ~l~~~l~~~kr~LlvlDdv~ 204 (247)
.+...+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~-~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAKE-NVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHh-cccEEEEeCcH
Confidence 44444433 55799999985
No 169
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.81 E-value=0.00015 Score=61.41 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~~~ 180 (247)
.+++-|+|++|+|||+|+.+++-..... ..-..++|++....++.+++. ++++.++.+.+. .+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788899999999999999987644321 112468999998888887764 456777654321 1222
Q ss_pred HH---HHHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 GR---ARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ~~---~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.. +..+...+...+--|||+|.+..
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 22 33444445444556899999863
No 170
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.80 E-value=0.0001 Score=66.09 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=34.0
Q ss_pred cccccchHHHHHHHHHh---c-------CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 94 EAFESRMSTLNDILGAL---R-------NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.++.|.+...+.|.... . -...+-+.++|++|+|||.+|+.+++.+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45667665555444321 1 0235678999999999999999999987643
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=7.9e-05 Score=67.97 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=58.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|||..|+|||.|++.+++.......--.++|+++ .++...+...+... ....+.+.+..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~~-- 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYRE-- 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhhc--
Confidence 356899999999999999999998764311224567643 44444444443211 12234444443
Q ss_pred cEEEEEeCCCCccc---h-hhhcccCCC-CCCCeEEEEeeCc
Q 037337 195 RILVILDNIWEHLD---L-QVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 195 r~LlvlDdv~~~~~---~-~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
-=+|+|||++.... + +.+...+.. ...+..||+||..
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 25788999986521 1 122222211 1335668888875
No 172
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00038 Score=59.14 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=41.0
Q ss_pred cccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 94 EAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|.+...+.|.+.+..+. .....++|+.|+||+++|..+++.+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 467899999999999988775 47889999999999999999998864
No 173
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.79 E-value=5.3e-05 Score=60.05 Aligned_cols=111 Identities=8% Similarity=0.088 Sum_probs=60.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..+.|.|+.|+||||++..++...... ....++..-.+......-...+..+-.. ..+.......+...|.. .+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALRQ-DP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeeccc---CCCccCHHHHHHHHhcC-Cc
Confidence 478999999999999999988876543 2333333222110000000001111000 11122334556666655 35
Q ss_pred EEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 196 ILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 196 ~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
=++++|++.+.+.+...... ...|..++.|+...+++
T Consensus 76 d~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 68999999877655443222 23456688888877664
No 174
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.76 E-value=0.0003 Score=60.32 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..+..++|||++|+|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346889999999999999999999998765
No 175
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0073 Score=49.05 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=54.1
Q ss_pred cccc-chHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH
Q 037337 95 AFES-RMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 95 ~~~g-R~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 160 (247)
.++| -+..++++.+.+. =.++.-+.++|++|.|||-||+.++++... .|+.++...-+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvsgselv- 218 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSGSELV- 218 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEechHHHH-
Confidence 3455 5666666655543 124678899999999999999999986443 45666654222
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 161 KVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 161 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+.. +|. .......++-..+..-+.+|..|++++.
T Consensus 219 ---qk~---ige------gsrmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 219 ---QKY---IGE------GSRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred ---HHH---hhh------hHHHHHHHHHHHHhcCCceEeeeccccc
Confidence 111 111 1122333333333334678888888754
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.4e-05 Score=70.49 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCC----CEEEEEEeCCCCCHHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLF----DLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
...+.+||++|+.++++.|......--.++|.+|+|||+++--++.+.-..+-. +..++. . ++..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D~g~------ 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----DLGS------ 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----cHHH------
Confidence 356799999999999999986655555688999999999999999987554211 112221 0 1111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 168 DKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
-.....--..-++.+..+.+.+...++.+|++|++...
T Consensus 237 -LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 237 -LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred -HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 11111111344555666666665445799999998754
No 177
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.75 E-value=0.00034 Score=56.18 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH----hCCC---CCCCChHH---HHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK----LGLT---FREESESG---RAR 184 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~----l~~~---~~~~~~~~---~~~ 184 (247)
..++.|+|.+|+|||+||.+++...... -..++|++....+. +-+.+++.. +... .+..+..+ ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 4789999999999999999999887543 34578887655443 223333322 1100 01112222 223
Q ss_pred HHHHHHcCCCcEEEEEeCCCC
Q 037337 185 SLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 185 ~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.+...+.. +.-++|+|.+..
T Consensus 95 ~~~~~~~~-~~~lvvIDsi~~ 114 (218)
T cd01394 95 ETETFADE-KVDLVVVDSATA 114 (218)
T ss_pred HHHHHHhc-CCcEEEEechHH
Confidence 34444443 356899999764
No 178
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.74 E-value=5.2e-05 Score=62.19 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=43.0
Q ss_pred cCCCcccccchHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 90 NKGYEAFESRMSTLNDILGALR-----NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|....+|+|.++..+.|.-++. +...--+.++|++|.||||||.-+++...+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 4556889999888887755553 3456789999999999999999999998765
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00047 Score=60.02 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
....+.|||..|.|||.|++.+++.......-..++|++ .+.....+...+.. ..++..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 378999999999999999999999987663223455542 33344444444321 2244555555 3
Q ss_pred CcEEEEEeCCCCccc---h-hhhcccCCC-CCCCeEEEEeeCch
Q 037337 194 KRILVILDNIWEHLD---L-QVVGIPHGD-DHKGCKVLFTARSL 232 (247)
Q Consensus 194 kr~LlvlDdv~~~~~---~-~~l~~~~~~-~~~~s~iiiTtR~~ 232 (247)
-=++++||++.... + +.+...|.. ...|-.||+|++..
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 24888999986422 1 222222211 12344899998643
No 180
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.74 E-value=0.00021 Score=67.78 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGALRN------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+..|.+...+.++++|.. .....+.++|++|+||||+++.++.....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~ 375 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44588888888889887751 23467999999999999999999987653
No 181
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.0001 Score=65.58 Aligned_cols=99 Identities=8% Similarity=0.088 Sum_probs=57.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
...+.|+|++|+|||+|++.+++..... ...++|++ ...+...+...+... ....+.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~~-- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYRN-- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHccc--
Confidence 4678999999999999999999987654 23356664 234444555554321 12234444433
Q ss_pred cEEEEEeCCCCccc----hhhhcccCCC-CCCCeEEEEeeCc
Q 037337 195 RILVILDNIWEHLD----LQVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 195 r~LlvlDdv~~~~~----~~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
.-+|++||++.... .+.+...+.. ...|..||+||..
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 35888999876422 1222222211 1235568888854
No 182
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.73 E-value=5.8e-05 Score=64.56 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 95 AFESRMSTLNDILGALRN------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.++|-++.+.++.+++.. ...+++.++|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 799999999999988852 24588999999999999999999998765
No 183
>PRK06696 uridine kinase; Validated
Probab=97.72 E-value=6.6e-05 Score=60.64 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 98 SRMSTLNDILGALR---NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 98 gR~~~~~~L~~~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||||+.++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36667777777664 4567899999999999999999999988543
No 184
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.72 E-value=0.00032 Score=58.18 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE---eCCCCCHHHHHHHHHHHhC-CC-------CCCCChHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE---MSQSPDIRKVQGEIADKLG-LT-------FREESESG 181 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~l~~~i~~~l~-~~-------~~~~~~~~ 181 (247)
.....++|.|+.|+|||||.+.++...... .+.+++. +...... .+++.... .+ .+..+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhH----HHHHHHhcccccccccccccccccch
Confidence 345678999999999999999999877643 2334431 1111112 22322221 11 11111111
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 182 RARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 182 ~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
....+...+....+-++++|+....+.+..+...+ ..|..+|+||.+.++.
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 22334444443356899999998776665554443 2477899999988773
No 185
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.72 E-value=0.00034 Score=54.04 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
++.+.|++|+||||++..++..+.... ..++.+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCC
Confidence 678999999999999999998876542 2345555543
No 186
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.72 E-value=0.00037 Score=56.56 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------C-
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------------E- 177 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------------~- 177 (247)
..++.|.|++|+||||||.+++.....+. ..++|++ ...+..+++..+ ..++...+. .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 46999999999999999988777653331 3456766 333556666665 344432110 0
Q ss_pred --ChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 178 --SESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 178 --~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
........+.+.....+.-++|+|.....
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 11223333444433224578999997653
No 187
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.71 E-value=0.00011 Score=59.73 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=61.0
Q ss_pred CcccccchHHHHH---HHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 93 YEAFESRMSTLND---ILGALRNP------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 93 ~~~~~gR~~~~~~---L~~~L~~~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
..+.+|.++...+ |.+.|.++ .++.|..+|++|+|||.+|+.+++..+.. | +.+... +
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vkat----~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKAT----E-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEechH----H--
Confidence 4567887766544 56666654 37889999999999999999999887765 2 222111 1
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 164 GEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
-|-+..| +....+.++.++....-+|++.||+++-.
T Consensus 187 -liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 187 -LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred -HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 1112221 23444556666665556799999998743
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.71 E-value=9.5e-05 Score=69.99 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=38.3
Q ss_pred CcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++.|.+..++.|.+++.- ...+.+.++|++|+|||+||+.+++....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 34578999988888776531 23467889999999999999999987643
No 189
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.71 E-value=0.00033 Score=59.48 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CC--
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK----LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ES-- 178 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~-- 178 (247)
..++-|+|++|+|||+|+.+++....... .-..++|++....++..++. +++..++..... .+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHH
Confidence 57889999999999999999988754311 01268999998888877654 445555433210 11
Q ss_pred -hHHHHHHHHHHHcCC--CcEEEEEeCCCC
Q 037337 179 -ESGRARSLFSRLNRE--KRILVILDNIWE 205 (247)
Q Consensus 179 -~~~~~~~l~~~l~~~--kr~LlvlDdv~~ 205 (247)
.....+.+.+.+... +.-+||+|.+..
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 112344555566442 245899999764
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00028 Score=61.02 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLGLTF 174 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~ 174 (247)
..+++++|+.|+||||++.+++...........+.+++.... ....+-+...++.++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 579999999999999999999988654311234566654432 233444555555665543
No 191
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.70 E-value=0.00026 Score=55.15 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|.|.|++|+||||+|+.++..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 192
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.70 E-value=0.00036 Score=59.45 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCh-
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKL----FDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ESE- 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~~- 179 (247)
..++-|+|++|+|||+|+.+++........ -..++|++....++...+. ++++.++...+. .+.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~~ 180 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNSD 180 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCHH
Confidence 578899999999999999999877543211 1368999998887877654 445555533211 111
Q ss_pred --HHHHHHHHHHHcC-CCcEEEEEeCCCC
Q 037337 180 --SGRARSLFSRLNR-EKRILVILDNIWE 205 (247)
Q Consensus 180 --~~~~~~l~~~l~~-~kr~LlvlDdv~~ 205 (247)
......+...+.. .+--|||+|.+..
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1223444445543 3445999999754
No 193
>PRK04328 hypothetical protein; Provisional
Probab=97.70 E-value=0.00028 Score=57.98 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=63.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF------------------- 174 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~------------------- 174 (247)
..+++.|.|++|+|||+|+.+++...... -...+|++.... ..++.+ -+++++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEecccccc
Confidence 35889999999999999999988764333 345788876653 333333 233333210
Q ss_pred ------------CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--c-------hhhhcccCCCCCCCeEEEEeeCc
Q 037337 175 ------------REESESGRARSLFSRLNREKRILVILDNIWEHL--D-------LQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 175 ------------~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~-------~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
+..+.......+.+.+...+.-++|+|.+.... + +..+...+ ...|+.+++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~l--k~~g~t~llt~e~ 172 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVL--SGLGCTAIFVSQV 172 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHH--HhCCCEEEEEECc
Confidence 011233445556666654445689999985331 0 11111111 3557778888643
No 194
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.69 E-value=0.00035 Score=59.87 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~~~ 180 (247)
..+.-|+|++|+|||+|+.+++-..... ..-..++|++....++.+++. ++++.++.+.+. .+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCHH
Confidence 4788899999999999999997544321 112468999999988888754 456777654321 1222
Q ss_pred HH---HHHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 GR---ARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ~~---~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.. +..+...+...+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 22 23333344333457899999763
No 195
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.68 E-value=0.00065 Score=57.51 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
.+++-|+|+.|+||||||..+....... -...+|+++....+..- +..+|.+.+ +.+.++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4789999999999999999999887655 34688999877766533 566665533 2334444454445
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.++.+.--++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 556656678999998654
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00062 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.....++|+.|+|||++|+.++..+-.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 567889999999999999999998754
No 197
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.67 E-value=0.00058 Score=55.51 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------------------ 175 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------------------ 175 (247)
..+++.|+|.+|+|||+|+.+++.....+ -..++|++... +..++...+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35899999999999999999997664333 34688888764 345555543 33332111
Q ss_pred ---CCChHHHHHHHHHHHcCCCcEEEEEeCCC
Q 037337 176 ---EESESGRARSLFSRLNREKRILVILDNIW 204 (247)
Q Consensus 176 ---~~~~~~~~~~l~~~l~~~kr~LlvlDdv~ 204 (247)
..........+.+.+...+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11224455666666654345689999976
No 198
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.66 E-value=0.00046 Score=53.20 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 96 FESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
++|....+.++.+.+. ......|.|+|..|+||+.+|+.+.+.-... -...+-|+|+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhh
Confidence 3566777777766554 1233677899999999999999998743221 123455666643
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.65 E-value=0.00014 Score=54.05 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=33.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
|.|+|++|+|||+||+.+++.... ....+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999998832 345678888888877654
No 200
>PTZ00035 Rad51 protein; Provisional
Probab=97.64 E-value=0.00087 Score=57.50 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
..++.|+|++|+|||+|+..++-..... ..-..++|++....++.++ +.++++.++.... ..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 5789999999999999999998655421 1123577998877777666 4555666654321 11222
Q ss_pred HHHH---HHHHHHcCCCcEEEEEeCCCC
Q 037337 181 GRAR---SLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ~~~~---~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.... .+...+...+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2222 233344444557999999864
No 201
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.62 E-value=0.00058 Score=60.42 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLGLTFRE----ESESGRARSLFS 188 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~ 188 (247)
.+.++.++|++|+||||++..++..+.... + .+..+++... +...+-+..++..++.+... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467899999999999999999999887542 2 3445554432 12344456667776654322 222333333444
Q ss_pred HHcCCCcEEEEEeCCC
Q 037337 189 RLNREKRILVILDNIW 204 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~ 204 (247)
.+.. . -+||+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4433 2 567788764
No 202
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.62 E-value=0.00047 Score=59.87 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE--SESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 192 (247)
..++.|.|.+|+|||||+.+++...... -..++|++... +...+. .-+..++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4789999999999999999999877654 24678887543 333332 2244555433221 011123445555544
Q ss_pred CCcEEEEEeCCCC
Q 037337 193 EKRILVILDNIWE 205 (247)
Q Consensus 193 ~kr~LlvlDdv~~ 205 (247)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4567899999854
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0002 Score=64.41 Aligned_cols=102 Identities=22% Similarity=0.364 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
.+.-|.+||++|+|||-||+.+++..... |+++... +++.. ..| ..+..+..++.+.+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNk---YVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNK---YVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHH---Hhh------hHHHHHHHHHHHhhcC
Confidence 35778999999999999999999987765 4555543 22111 111 1234456666666555
Q ss_pred CcEEEEEeCCCCccc-------------hhhhcccCC--CCCCCeEEEEeeCchhhh
Q 037337 194 KRILVILDNIWEHLD-------------LQVVGIPHG--DDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 194 kr~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~~s~iiiTtR~~~va 235 (247)
-+++|.||+++.... +..+...+. ....|.-||-.|..+++.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 689999999985411 122222221 123566677777767664
No 204
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00021 Score=63.31 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=61.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH---
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRL--- 190 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l--- 190 (247)
+...+.+.|++|+|||+||..++..- .|+.+--++...-.. -+.......+.+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG------------------~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIG------------------LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccC------------------ccHHHHHHHHHHHHHHh
Confidence 46678889999999999999998653 366544332111110 11122222232222
Q ss_pred -cCCCcEEEEEeCCCCccchhhhccc---------------CCCCCCCeEEEEeeCchhhhhccCCC
Q 037337 191 -NREKRILVILDNIWEHLDLQVVGIP---------------HGDDHKGCKVLFTARSLDVLSRKMDS 241 (247)
Q Consensus 191 -~~~kr~LlvlDdv~~~~~~~~l~~~---------------~~~~~~~s~iiiTtR~~~va~~~~~~ 241 (247)
+. .--.||+||++...+|..++.. .|..++..=|+-||...+|.. .|+-
T Consensus 595 YkS-~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i 659 (744)
T KOG0741|consen 595 YKS-PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGI 659 (744)
T ss_pred hcC-cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCH
Confidence 33 3478999999987665443222 233444555777888888876 4653
No 205
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.60 E-value=3.5e-05 Score=57.34 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 97 ESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|+...++++.+.+.. .....|.|+|.+|+||+++|+.+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 3555566666555541 3346788999999999999998887644
No 206
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00042 Score=56.52 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 92 GYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
...+.-|-.+++++|.+..+- +.++-|.++|++|.|||-+|+.++++.... | +.+-..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvigs-- 245 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIGS-- 245 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----EeehhH--
Confidence 355677788888888776431 246788999999999999999999876543 3 322221
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
++.+. ..| ........|.+..+.+|-++|.+|+++-
T Consensus 246 --elvqk---yvg------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 --ELVQK---YVG------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred --HHHHH---Hhh------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111 111 1234456677777777889999999873
No 207
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.60 E-value=0.00024 Score=55.10 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFS 151 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 151 (247)
...+|.+.|++|+||||+|+.++..+... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 34689999999999999999999998754 5555555
No 208
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.60 E-value=0.00052 Score=58.36 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH---K-LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~~~ 180 (247)
..++.|+|++|+|||+|+..++...... . .-..++|++....++..+ +.++++.++..... .+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChH
Confidence 5889999999999999999998643221 1 113579999888777766 44455655543211 1222
Q ss_pred H---HHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 G---RARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ~---~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
+ .+..+...+...+--|||+|.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 2 233333344444567899999754
No 209
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00039 Score=57.57 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=62.0
Q ss_pred cccccchHHHHHHHHHhc----------C--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 94 EAFESRMSTLNDILGALR----------N--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~----------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
.+..|-+...+.|.+... . ..-+-|.++|++|.||+-||+.|+...... |+++++. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----H
Confidence 346666666666665532 1 135789999999999999999999876532 3445443 2
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 162 VQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 162 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+.. ..+| ..+.+...|.+..+..++.+|.+|+++..
T Consensus 202 LvS---KWmG------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 202 LVS---KWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHH---HHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 211 2333 23556677777777778899999999854
No 210
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.59 E-value=0.00033 Score=54.57 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=31.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
+.|.|++|+|||+|+.+++...... -..+.|++... +..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999998876433 24577876544 44454443
No 211
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00041 Score=64.04 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=62.4
Q ss_pred cccccchHHHHHHHHHhcC---------C---CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 94 EAFESRMSTLNDILGALRN---------P---DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~---------~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
.++=|-++....|.+.+.- . +.+-|.+||++|+|||-||+.|+....-. |+++..+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGPE---- 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGPE---- 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCHH----
Confidence 4555677777777776541 2 25678999999999999999999876644 45555431
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 162 VQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 162 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++. ...|. .++-..++.++.+...+|+|.||++++.
T Consensus 741 LLN---MYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 LLN---MYVGQ------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHH---HHhcc------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 111 11221 1333566666666668899999999865
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.56 E-value=0.00014 Score=64.47 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=41.9
Q ss_pred cccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 037337 94 EAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLF 145 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 145 (247)
..++||++.++.+...+..+ .-|.++|++|+|||+||+.+.........|
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 45899999999999888766 678899999999999999999876544334
No 213
>PRK08233 hypothetical protein; Provisional
Probab=97.56 E-value=0.00041 Score=53.81 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.54 E-value=0.0018 Score=60.91 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=42.6
Q ss_pred cccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 94 EAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
..++|+...+..+.+.+. ......|.|+|..|+|||++|+.+.+.-... -...+.++|...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence 357888888887766554 2234678899999999999999998754322 123566676654
No 215
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.54 E-value=0.00098 Score=55.08 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF------------------- 174 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~------------------- 174 (247)
..+++.|+|.+|+|||+++.++....... ...++||+....+ .++.....+ ++...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~ 96 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSEK 96 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEcccccc
Confidence 45899999999999999999999987766 6678998877653 343333322 32110
Q ss_pred C--------CCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 175 R--------EESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 175 ~--------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
. ..+.......+.+....-+...+|+|++-.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 97 GLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred ccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 0 112344555666665443457899999873
No 216
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.53 E-value=0.00055 Score=58.68 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----------ESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----------~~~~ 180 (247)
..++-|+|.+|+|||+|+..++-..... ..-..++|++....++.+++ .++++.++...+. .+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 4788899999999999999888654321 11126899999998888775 4567776644321 1222
Q ss_pred HHH---HHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 GRA---RSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ~~~---~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
... ..+...+...+--|||+|.+..
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 222 2222334444567999999864
No 217
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.53 E-value=0.00094 Score=60.22 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=70.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------------CC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------------EE 177 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------------~~ 177 (247)
..+++.|.|++|+|||||+.+++...... -..++|++... +..++... ++.++.+.. ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccC
Confidence 35899999999999999999999887544 24567765443 45555555 345543221 12
Q ss_pred ChHHHHHHHHHHHcCCCcEEEEEeCCCCcc------chhh----hcccCCCCCCCeEEEEeeCchhh
Q 037337 178 SESGRARSLFSRLNREKRILVILDNIWEHL------DLQV----VGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 178 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------~~~~----l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
+..+.+..+.+.+...+.-++|+|.+.... +... +... -...|..+++|.-...+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~--lk~~~it~~~t~~~~~~ 401 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGY--AKQEEITGFFTNTSDQF 401 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHH--HhhCCCeEEEeeccccc
Confidence 346677777777765556789999987431 1111 1111 13557777888554443
No 218
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.00014 Score=58.28 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA--KNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~~l~~ 188 (247)
.+.+.|+|+.|.|||||.+.+.... ..... .+|. .. .. ...+.++...++...+ ..+-...+.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~---~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGS---FVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCC---eeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 3889999999999999999998432 11111 1111 00 00 0011111111111100 0111222233333
Q ss_pred HHc-CCCcEEEEEeCCCCccch-------hhhcccCCCC-CCCeEEEEeeCchhhhhc
Q 037337 189 RLN-REKRILVILDNIWEHLDL-------QVVGIPHGDD-HKGCKVLFTARSLDVLSR 237 (247)
Q Consensus 189 ~l~-~~kr~LlvlDdv~~~~~~-------~~l~~~~~~~-~~~s~iiiTtR~~~va~~ 237 (247)
.+. ..++.|++||+.....+. ..+...+... ..+..+|++|...+++..
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 331 135699999998765321 1121222122 234579999999998764
No 219
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.53 E-value=0.0011 Score=51.44 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+-..+.|+|++|.|||||.+.+|...+..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 34789999999999999999999988754
No 220
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.53 E-value=0.00065 Score=56.17 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH-HHHHHHHHHHhCCCCC------------C----
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI-RKVQGEIADKLGLTFR------------E---- 176 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~l~~~i~~~l~~~~~------------~---- 176 (247)
..+++.|+|++|+|||+||.+++...... -..++|++....... .+-+...+..++...+ .
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~ 112 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTEL 112 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhh
Confidence 35889999999999999999997765433 245788877643311 1111222333433211 0
Q ss_pred -CChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 177 -ESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 177 -~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.+.......+.......+.-++|+|.+..
T Consensus 113 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 142 (259)
T TIGR03878 113 RENVPNLLATLAYAIKEYKVKNTVIDSITG 142 (259)
T ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEcCchH
Confidence 11233344455545444456899999853
No 221
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.52 E-value=0.00042 Score=58.69 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=48.4
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 163 (247)
|...+.|+-..+....++.++..+ +.|.|.|++|+|||++|..++..+... .+.|+++...+..+++
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 333445666667777788888654 568999999999999999999988743 2456666665554443
No 222
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0012 Score=53.55 Aligned_cols=94 Identities=22% Similarity=0.243 Sum_probs=56.4
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++-|-+-..+++.+..+ =+.++-|.++|++|+|||.||+.++++.... | +.+-..
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs--- 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS--- 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH---
Confidence 3455666666666655543 1357889999999999999999999876654 3 332221
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++. -..+|.. ......+....+.+-+.++.+|+++..
T Consensus 224 -efv---qkylgeg------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 -EFV---QKYLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred -HHH---HHHhccC------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 111 1223321 122334444444556788889998754
No 223
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.0011 Score=58.43 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
++.++.++|++|+||||+|.+++..+..+..+ .+..+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc
Confidence 35789999999999999999999886532112 34455554
No 224
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00085 Score=54.94 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCC-------CCCh-H
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ-----SPDIRKVQGEIADKLGLTFR-------EESE-S 180 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~l~~~i~~~l~~~~~-------~~~~-~ 180 (247)
+..+++|+|.+|+|||||++.+..-.+.. .+.+++.-.+ .....+-..+++..++...+ .-+. +
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34799999999999999999999877654 2344433211 12233445666676664422 1111 1
Q ss_pred HHHHHHHHHHcCCCcEEEEEeCCCCccch---hhhcccC--CCCCCCeEEEEeeCchhhhhc
Q 037337 181 GRARSLFSRLNREKRILVILDNIWEHLDL---QVVGIPH--GDDHKGCKVLFTARSLDVLSR 237 (247)
Q Consensus 181 ~~~~~l~~~l~~~kr~LlvlDdv~~~~~~---~~l~~~~--~~~~~~s~iiiTtR~~~va~~ 237 (247)
..--.+...|.- ++-++|.|+.-+..+. ..+...+ .....|...+..|.+-+|+.+
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 122233444444 5689999998765432 1111111 123446778888888888874
No 225
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.0025 Score=54.55 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLGLT 173 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~ 173 (247)
+..++.++|++|+||||++..++..+.... + .+.+++.... ....+-+...+..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 367999999999999999999998876542 3 3444443321 11223345556666543
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00017 Score=54.38 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHK 143 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 143 (247)
.-|.|+|++|+||||++..+++.++...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999988764
No 227
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.48 E-value=0.0022 Score=48.83 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=65.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe-CC--CCCHHHHHHHHHHHh-----CCC--CCCCChHH----
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM-SQ--SPDIRKVQGEIADKL-----GLT--FREESESG---- 181 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~--~~~~~~l~~~i~~~l-----~~~--~~~~~~~~---- 181 (247)
..|-|++..|.||||+|...+-+...+. + .+.++.. .. ......++..+ ..+ +.. ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688889999999999999998876653 3 2333322 22 33334444333 111 111 00011111
Q ss_pred ---HHHHHHHHHcCCCcEEEEEeCCCCc-----cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 182 ---RARSLFSRLNREKRILVILDNIWEH-----LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 182 ---~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
......+.+..+.-=|||||++-.. .+.+.+...+.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233444555555579999998654 223444444445566788999999865
No 228
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.47 E-value=0.00029 Score=56.60 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-----ccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 103 LNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK-----NHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 103 ~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
.+.+...+... .+..|+|++|+|||+++..+..... ........+.+....+..+.+++..+..
T Consensus 7 ~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 34444444433 2788999999999988887777762 1122455666777777778888888777
No 229
>PRK10867 signal recognition particle protein; Provisional
Probab=97.47 E-value=0.00099 Score=58.87 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
.+.++.++|++|+||||++.+++..+..... ..+..+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D 138 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAAD 138 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 3678999999999999999999987764411 224445444
No 230
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0002 Score=61.17 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
=+-|.++|++|+|||-||+.|+......
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 3568899999999999999999987754
No 231
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.47 E-value=0.00086 Score=59.74 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE--SESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 192 (247)
..++.|.|.+|+|||||+.+++...... -..++|++... +...+... ++.++...+.. ..+.....+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999999887533 23578887543 33343322 45565432210 001113445555544
Q ss_pred CCcEEEEEeCCCC
Q 037337 193 EKRILVILDNIWE 205 (247)
Q Consensus 193 ~kr~LlvlDdv~~ 205 (247)
.+.-+||+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4567899999864
No 232
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.46 E-value=0.0006 Score=64.61 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|.+...+.|.+.+. -...+-+.++|++|+|||+||+.+++..... | +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH---
Confidence 3456676666666655432 1234568899999999999999999986543 2 222211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+++.. .. ...+..+..+.+......+.+|+||+++..
T Consensus 522 -~l~~~---~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 522 -EILSK---WV------GESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred -HHhhc---cc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 11110 01 111233444555544445799999999743
No 233
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0025 Score=54.30 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----C
Q 037337 101 STLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT-----F 174 (247)
Q Consensus 101 ~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-----~ 174 (247)
...+.|.+.+..+. .....++|+.|+||+++|+.++..+-........ .|+.. ...+.+...-.++ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcc
Confidence 34455667676654 4677789999999999999999886543211000 00000 1111111110000 0
Q ss_pred -CC-CChHHHHHHHHHHH----cCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 175 -RE-ESESGRARSLFSRL----NREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 175 -~~-~~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
++ .-..+.+..+.+.+ ..+++-++|+|+++.. .....+...+.....++.+|++|.+.
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 00 01122333444443 2235578889999876 34455555555556677777777654
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0022 Score=54.53 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 101 STLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 101 ~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+.|...+..++ ...+.++|+.|+||+++|..++..+-.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 44566777776654 456889999999999999999987654
No 235
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.45 E-value=0.0014 Score=53.03 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
++..+++|.|++|+|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999887754
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.0017 Score=54.05 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+..++.++|++|+||||++.+++..+... -..+.++++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC
Confidence 45789999999999999999999887644 23456666553
No 237
>PRK06547 hypothetical protein; Provisional
Probab=97.45 E-value=0.00024 Score=54.96 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+...+......+|+|.|++|+||||+|+.++....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445566778999999999999999999998754
No 238
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00042 Score=64.40 Aligned_cols=94 Identities=23% Similarity=0.285 Sum_probs=58.1
Q ss_pred CcccccchH---HHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH
Q 037337 93 YEAFESRMS---TLNDILGALRNP---------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 93 ~~~~~gR~~---~~~~L~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 160 (247)
..++.|-++ |+.++.+.|.++ -++-+.++|++|+|||-||+.++....+. |++++...-++
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHHH
Confidence 456777655 555556666653 26778999999999999999999876654 45555432111
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 161 KVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 161 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
- +.. ........+....+...++++.+|+++..
T Consensus 383 ~--------~~g-----~~asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 383 M--------FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred H--------hcc-----cchHHHHHHHHHhhccCCeEEEecccccc
Confidence 1 100 00122344444444556789999988743
No 239
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.43 E-value=0.00099 Score=63.91 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=41.3
Q ss_pred ccccchHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 95 AFESRMSTLNDILGALR---NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.++||+.+++.|...+. .....++.+.|.+|+|||+|++.|......+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 36899999999988875 3456799999999999999999999987655
No 240
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.42 E-value=0.0022 Score=54.57 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=38.0
Q ss_pred CcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 037337 93 YEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
.-++-+|..+..--++.|.++....|.+.|.+|+|||-||....-
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 345677888888889999999999999999999999988876643
No 241
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00041 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|.|.|++|+||||+|+.++..+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 242
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.42 E-value=0.00035 Score=64.59 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=59.4
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
+.....++|.++.++.|...+... +.+.++|++|+||||+|+.+++.+... .++..+|..- ...+...+++.++..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~-~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKE-ELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChH-hHHHheEeeC-CCcchHHHHHHHHHh
Confidence 345577999999998888877765 478899999999999999999886433 3566677544 445677777777776
Q ss_pred hCC
Q 037337 170 LGL 172 (247)
Q Consensus 170 l~~ 172 (247)
+|.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 653
No 243
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.41 E-value=0.00057 Score=58.43 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=43.1
Q ss_pred CcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 93 YEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
...++|+...+..+.+.+. ......|.|+|..|+||+++|+.+...-... -...+.++|....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~ 69 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN 69 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC
Confidence 3468898888888877664 2234678899999999999999887532211 1234556776543
No 244
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.41 E-value=0.0017 Score=50.86 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCC--------CEEEEEEeCCCCCHHHHHHHHHHHhCCC--------------
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLF--------DLVVFSEMSQSPDIRKVQGEIADKLGLT-------------- 173 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~~~~~l~~~i~~~l~~~-------------- 173 (247)
.++.|+|++|+|||+++..++........| ..++|++..... ..+...+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeecccc
Confidence 588999999999999999999987643222 257888776653 23333322221100
Q ss_pred ---------CCCCChHHHHHHHHHHHcC-CCcEEEEEeCCCCc
Q 037337 174 ---------FREESESGRARSLFSRLNR-EKRILVILDNIWEH 206 (247)
Q Consensus 174 ---------~~~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~ 206 (247)
..........+.+.+.+.. .+.-++|+|++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 0011123445667777765 45689999987643
No 245
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00035 Score=52.64 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT 173 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 173 (247)
+|.|.|++|+||||+|+.+++++.-. ++ +...+++++++..|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68899999999999999999987754 12 2346778888888765
No 246
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.39 E-value=0.0017 Score=49.98 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=66.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEE--EEEEeCCCCCHHHHHHHHHH---HhCCC--CCCCCh-------H
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLV--VFSEMSQSPDIRKVQGEIAD---KLGLT--FREESE-------S 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~--~wv~~~~~~~~~~l~~~i~~---~l~~~--~~~~~~-------~ 180 (247)
...|-|++..|.||||.|.-++.+...+. +... -|+.-.........+..+.- .++.. ....+. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 36788888899999999999998877653 3322 23332222333344433200 01111 111111 1
Q ss_pred HHHHHHHHHHcCCCcEEEEEeCCCCc-----cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 181 GRARSLFSRLNREKRILVILDNIWEH-----LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 181 ~~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
.......+.+..++-=|||||++-.. .+.+.+...+...+.+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22344455555555679999998643 22334444444566788999999987
No 247
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.39 E-value=0.00016 Score=52.53 Aligned_cols=22 Identities=45% Similarity=0.806 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 037337 118 LGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
|.|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 248
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.39 E-value=0.0026 Score=52.67 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGL-------TFREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~------ 180 (247)
-..+.|.|.+|+|||+|+..+++....+ +-+..+++-++... .+.++...+...-.. ...+.+..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678899999999999999999998765 12456677776654 345555555443111 11112221
Q ss_pred HHHHHHHHHHc-C-CCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRLN-R-EKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l~-~-~kr~LlvlDdv~~~ 206 (247)
...-.+.+++. . ++.+||++||+...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12234556662 2 57899999998643
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0012 Score=57.51 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHK--LFDLVVFSEMSQSPD-IRKVQGEIADKLGLT 173 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~ 173 (247)
...++.++|+.|+||||.+..++..+.... .-..+..+++..... ...-+...++.++.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp 235 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 235 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc
Confidence 357899999999999999999998765321 123455565554311 112244444545543
No 250
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0012 Score=57.00 Aligned_cols=86 Identities=27% Similarity=0.338 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE--SESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 192 (247)
-.++.|-|-+|+|||||..+++.++.... .+.||+- ..+..++ +--+..++.+.++. -.+...+.+...+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsG--EES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSG--EESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeC--CcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47999999999999999999999998763 6777753 3343332 22255666544321 223335566666666
Q ss_pred CCcEEEEEeCCCCc
Q 037337 193 EKRILVILDNIWEH 206 (247)
Q Consensus 193 ~kr~LlvlDdv~~~ 206 (247)
.++-++|+|.++..
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 67899999998754
No 251
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00011 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+.|.+.|.+|+||||+|++++..++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999988764
No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0016 Score=56.63 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
+.++|+++|++|+||||++..++..+..++ ..+.++++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecC
Confidence 347899999999999999999998876442 234455544
No 253
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.37 E-value=0.0025 Score=51.47 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC--------------------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF-------------------- 174 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~-------------------- 174 (247)
...+.|.|++|+|||+|+.+++...... -..++|++.... ..++... ++.++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~ 94 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKE 94 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccccc
Confidence 4789999999999999999987654322 346788876443 3444332 33332110
Q ss_pred -----CCCChHHHHHHHHHHHcC--CCcEEEEEeCCCCc---c--chhhhcccCC--CCCCCeEEEEeeCch
Q 037337 175 -----REESESGRARSLFSRLNR--EKRILVILDNIWEH---L--DLQVVGIPHG--DDHKGCKVLFTARSL 232 (247)
Q Consensus 175 -----~~~~~~~~~~~l~~~l~~--~kr~LlvlDdv~~~---~--~~~~l~~~~~--~~~~~s~iiiTtR~~ 232 (247)
...+..+....+.+.+.. .+.-++|+|.+... . ....+...+. -...|+.+++|+...
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 95 DEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred cccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 012344455555555432 13357889997643 1 1111101110 134588899998743
No 254
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.00035 Score=62.63 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=78.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|..-.+++|.+.....|...+..++ ...-...|+.|+||||+|+-++..+-..+.- .....+.....+.|.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~-------~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP-------TAEPCGKCISCKEIN 83 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC-------CCCcchhhhhhHhhh
Confidence 34455778999999999999988665 3455678999999999999999987544210 011111111112222
Q ss_pred HHhCCC-----CCCCChHHHHHHHHHHHc----CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeC-chhh
Q 037337 168 DKLGLT-----FREESESGRARSLFSRLN----REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTAR-SLDV 234 (247)
Q Consensus 168 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR-~~~v 234 (247)
..-..+ .-.....+-+..+.+... .++-=+.|+|+|.-. ..|..+...+.........|+.|. -..+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 110000 001112223444444441 234457889999754 567777676655455555544444 4444
No 255
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00099 Score=61.14 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP--DIRKVQGEIADKLGLTFREESESGRARSLFSRLN 191 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 191 (247)
....|.|.|+.|+|||+||+.+++.... ...-++.+++|+.-. ..+.+.+.+-..+ .+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh
Confidence 3578899999999999999999999884 345567777776542 2333333322222 11222
Q ss_pred CCCcEEEEEeCCCCc
Q 037337 192 REKRILVILDNIWEH 206 (247)
Q Consensus 192 ~~kr~LlvlDdv~~~ 206 (247)
. .+-+|||||++..
T Consensus 493 ~-~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCL 506 (952)
T ss_pred h-CCcEEEEcchhhh
Confidence 3 4699999999743
No 256
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0028 Score=56.09 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK-NHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~ 155 (247)
..++.++|++|+||||++..++.... ... ...+.++++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCc
Confidence 46899999999999999999988775 221 23566676654
No 257
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.36 E-value=0.0011 Score=54.09 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccC----------CCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCC----------
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHK----------LFDLVVFSEMSQSPD-IRKVQGEIADKLGLTFR---------- 175 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~----------~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~~~---------- 175 (247)
+..|+|++|+|||+|+..++....... .-..++|++...+.+ +.+=+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999999988754211 112366766554432 23333344443321100
Q ss_pred -------C---CChHHHHHHHHHHHcCCCcEEEEEeCCCC--------ccchhhhcccCC--CCCCCeEEEEeeCchhh
Q 037337 176 -------E---ESESGRARSLFSRLNREKRILVILDNIWE--------HLDLQVVGIPHG--DDHKGCKVLFTARSLDV 234 (247)
Q Consensus 176 -------~---~~~~~~~~~l~~~l~~~kr~LlvlDdv~~--------~~~~~~l~~~~~--~~~~~s~iiiTtR~~~v 234 (247)
. .........+.+.+...+.-+||+|.+.. ......+...+. ....|+.||+++....-
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 0 01223344555555333567999997632 111222211111 12347778888876543
No 258
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.36 E-value=0.0012 Score=62.05 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 188 (247)
.+++-|+|++|+|||||+..++...... -..++|++....++. ..++.++.+.+. .+.+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4888899999999999999887765433 245789887776663 356777765331 233444444555
Q ss_pred HHcCCCcEEEEEeCCCC
Q 037337 189 RLNREKRILVILDNIWE 205 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~ 205 (247)
.+..++--|||+|.+..
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 55555678899999863
No 259
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.36 E-value=0.00058 Score=55.15 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-cccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC----------------CC-
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA-KNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT----------------FR- 175 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----------------~~- 175 (247)
..+++.|.|++|+|||+|+.+++... +..+ ..++|++.... ..++.+.+. .++.+ ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 35899999999999999999987654 4311 34778876554 344444432 33321 01
Q ss_pred ----CCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 176 ----EESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 176 ----~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
..+.......+.+.+...+...+|+|.+..
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 234566667777776544457999998753
No 260
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0014 Score=54.52 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH-hCC-----CCCCCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK-LGL-----TFREESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-l~~-----~~~~~~~~~~~~~l~~ 188 (247)
.+++=|+|+.|+||||+|.+++-..+.. -..++|++.-..++...+ .+++.. +.. +.+.....+.++.+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4889999999999999999998877765 347899999998888774 334444 321 1111122233334433
Q ss_pred HHcCCCcEEEEEeCCCC
Q 037337 189 RLNREKRILVILDNIWE 205 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~ 205 (247)
...+ +--|+|+|.+-.
T Consensus 137 ~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAE-KIDLLVVDSVAA 152 (279)
T ss_pred hccC-CCCEEEEecCcc
Confidence 3333 357999999864
No 261
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.35 E-value=0.00044 Score=62.95 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=39.7
Q ss_pred CcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 93 YEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.+..++.+...+.......+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999887766656678899999999999999998754
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.002 Score=55.65 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCC-CCChHHHHHHHHHHHc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD-IRKVQGEIADKLGLTFR-EESESGRARSLFSRLN 191 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~ 191 (247)
+..+++++|+.|+||||++..++.....+. ..+.++++..... ..+-+...++.++.+.. ..++.+....+ +.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHH
Confidence 468999999999999999999998775442 3466777654432 23334444555554332 22333333222 3332
Q ss_pred -CCCcEEEEEeCCCC
Q 037337 192 -REKRILVILDNIWE 205 (247)
Q Consensus 192 -~~kr~LlvlDdv~~ 205 (247)
....=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 11235667777644
No 263
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.34 E-value=0.016 Score=52.73 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=67.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccC------CCCEEEEEEeCC-----CCCH------------HHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHK------LFDLVVFSEMSQ-----SPDI------------RKVQGEIADKL 170 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~~wv~~~~-----~~~~------------~~l~~~i~~~l 170 (247)
....|+|+|+.|+|||||.+.+........ .--.+.|+.-.. ..++ ..-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 347899999999999999999977654320 011123332111 1011 33445555555
Q ss_pred CCCCCC-------CChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhh---cccCCCCCCCeEEEEeeCchhhhh
Q 037337 171 GLTFRE-------ESESGRARSLFSRLNREKRILVILDNIWEHLDLQVV---GIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 171 ~~~~~~-------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l---~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
+.+.+. -|..+........+--.+.-+||||+=.+..+++.+ ...+ ..-.|+ ||+.|.++....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL-~~f~Gt-vl~VSHDr~Fl~ 500 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEGT-VLLVSHDRYFLD 500 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH-HhCCCe-EEEEeCCHHHHH
Confidence 544332 123333333333332335689999998776554332 2222 223466 899999988765
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.34 E-value=0.0002 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 265
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.34 E-value=0.00022 Score=56.27 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999998754
No 266
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.33 E-value=0.0027 Score=53.50 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=81.3
Q ss_pred CCcccccchHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH-HHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRN----PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI-RKVQGEI 166 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~l~~~i 166 (247)
+...++|-.++..+|.+|+.. +...-+.++||.|.|||+|......+.+. .-+..+-|......-. .-.+..|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHH
Confidence 345688988998888888752 33466779999999999999888887322 1233444555444322 2234555
Q ss_pred HHHhCCC-----CCCCChHHHHHHHHHHHcC-----CCcEEEEEeCCCCccchh---hhcccC----CCCCCCeEEEEee
Q 037337 167 ADKLGLT-----FREESESGRARSLFSRLNR-----EKRILVILDNIWEHLDLQ---VVGIPH----GDDHKGCKVLFTA 229 (247)
Q Consensus 167 ~~~l~~~-----~~~~~~~~~~~~l~~~l~~-----~kr~LlvlDdv~~~~~~~---~l~~~~----~~~~~~s~iiiTt 229 (247)
.+++... ....+-.+....+.+.|.. +.++++|+|+++--.... -++..| ....+=|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554321 1112334445666666632 235889999987542210 011111 1234557777888
Q ss_pred Cchhh
Q 037337 230 RSLDV 234 (247)
Q Consensus 230 R~~~v 234 (247)
|-...
T Consensus 180 rld~l 184 (408)
T KOG2228|consen 180 RLDIL 184 (408)
T ss_pred cccHH
Confidence 85443
No 267
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.33 E-value=0.0013 Score=50.66 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC-CcE
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE-KRI 196 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~ 196 (247)
+.|.|.+|+|||++|.+++... ...++|+.-....+. ++...|.+.-..........+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999998751 234677766655543 344454443322233333333444555555321 234
Q ss_pred EEEEeCCC
Q 037337 197 LVILDNIW 204 (247)
Q Consensus 197 LlvlDdv~ 204 (247)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 78899864
No 268
>PRK07667 uridine kinase; Provisional
Probab=97.33 E-value=0.00074 Score=53.25 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+|+|.|.+|+||||+|..+...+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999999999999999998754
No 269
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.33 E-value=0.0016 Score=50.03 Aligned_cols=114 Identities=20% Similarity=0.103 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCC---CC---EEEEEEeCCCCCHHHHHHHHHHHhCC-CCCCCCh-HHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKL---FD---LVVFSEMSQSPDIRKVQGEIADKLGL-TFREESE-SGRARSL 186 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f~---~~~wv~~~~~~~~~~l~~~i~~~l~~-~~~~~~~-~~~~~~l 186 (247)
-.+++|.|+.|+|||||++.++........ ++ .+.|+ .+...... ..+.+.+.. ....-+. +...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHH
Confidence 478999999999999999999887543210 11 12222 22221110 112222211 1112222 2222334
Q ss_pred HHHHcCCCcEEEEEeCCCCccch---hhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 187 FSRLNREKRILVILDNIWEHLDL---QVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 187 ~~~l~~~kr~LlvlDdv~~~~~~---~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
...+.. ++-++++|+-....+. ..+...+... +..||++|.+.+.+
T Consensus 103 aral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 444544 4578899997655332 2221222111 35688888887764
No 270
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.33 E-value=0.00071 Score=57.94 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=50.8
Q ss_pred ccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 95 AFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
.++|+++....+...+..+ ..+.+.|++|+|||+||+.++...... .+++.+.+.....++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 3888888888877777666 678899999999999999999988743 4667777777776665443
No 271
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.32 E-value=0.00082 Score=62.14 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=52.7
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL 170 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 170 (247)
.....++|.++....+...+... ..+.++|++|+|||++|+.+++.+.... |...+++. ....+..+++..++..+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~~-~~~~~~~~-n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDEE-LEDILVYP-NPEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCchh-heeEEEEe-CCCCCchHHHHHHHHhh
Confidence 34567899998888887777655 4666999999999999999998876542 33333332 22234455566666665
Q ss_pred C
Q 037337 171 G 171 (247)
Q Consensus 171 ~ 171 (247)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 272
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.32 E-value=0.0018 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+|+|.|++|+||||||+.++..+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999998753
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.32 E-value=0.00037 Score=63.01 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHh------cCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 94 EAFESRMSTLNDILGAL------RNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+++|-++.++++++.| .+.+.+++.++||+|+|||+||+.+++.++..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 36889999999999988 24456899999999999999999999987753
No 274
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.31 E-value=0.0012 Score=51.20 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC--C-------------CCCCCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGL--T-------------FREESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~--~-------------~~~~~~ 179 (247)
-.+++|.|+.|+|||||++.++...... .+.++++-. +.......+.+.++. + ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4689999999999999999998865432 233433211 111111111111110 0 011111
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEeCCCCccch---hhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 180 SG-RARSLFSRLNREKRILVILDNIWEHLDL---QVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 180 ~~-~~~~l~~~l~~~kr~LlvlDdv~~~~~~---~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
.+ ..-.+...+.. ++-+++||+-....+. +.+...+.....+..||++|.+.+...
T Consensus 102 G~~qrv~laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 11 12233344444 4578999998765332 112111111123567889998887654
No 275
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.31 E-value=0.00088 Score=57.71 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=61.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCChHHHHHHHHHHHcC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK-LGLTFREESESGRARSLFSRLNR 192 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-l~~~~~~~~~~~~~~~l~~~l~~ 192 (247)
....+.|.|+.|+||||+++.+.+..... ....++.. ..+... .... ... +.....+.........+...|..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~ti-Edp~E~--~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITI-EDPIEY--VHRN-KRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEE-cCChhh--hccC-ccceEEccccCCCCcCHHHHHHHhhcc
Confidence 34789999999999999999988876533 33444432 211110 0000 000 00000011112334455666655
Q ss_pred CCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 193 EKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 193 ~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
.+=.|++|++.+.+.+...... ...|..++.|....+++
T Consensus 195 -~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 -DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred -CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 5688999999877655432122 23455577777776655
No 276
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.31 E-value=0.00018 Score=55.62 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=33.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEeCCCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK-NHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~ 158 (247)
...+.+.|+.|+|||.||+.++..+. .. ....+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccc
Confidence 46788999999999999999999988 34 45667777776555
No 277
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.30 E-value=0.00064 Score=56.45 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+.|.|+|.||+||||+|+.+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999987763
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.30 E-value=0.0024 Score=56.28 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM 153 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 153 (247)
++.+|.++|++|+||||++.+++..+..++ + .+..+++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 367999999999999999999998776442 2 3444444
No 279
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0012 Score=57.86 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999865
No 280
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.30 E-value=0.0016 Score=58.11 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE--SESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 192 (247)
-.++.|.|.+|+|||||+.+++...... -..++|++... +..++... +..++...+.. ..+.....+.+.+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4789999999999999999998876543 23577876543 34443322 33444332110 001113445555544
Q ss_pred CCcEEEEEeCCCC
Q 037337 193 EKRILVILDNIWE 205 (247)
Q Consensus 193 ~kr~LlvlDdv~~ 205 (247)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4567899999864
No 281
>PF13245 AAA_19: Part of AAA domain
Probab=97.29 E-value=0.00085 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=18.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+.+++.|.|++|+|||+++......+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34778889999999995555554443
No 282
>PRK06851 hypothetical protein; Provisional
Probab=97.29 E-value=0.0045 Score=53.52 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=31.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
-.+.+.|.|++|+|||||+..++.....++ ++..+|-|.+.+
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~dP 254 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFDP 254 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCCC
Confidence 347899999999999999999999987653 555555444443
No 283
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.011 Score=51.76 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 100 MSTLNDILGALRNPD---------ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 100 ~~~~~~L~~~L~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+..+++|.+++.+.+ .+-=.++||||+|||+++..+++.+.
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 344555666555431 24557899999999999999998776
No 284
>PRK14531 adenylate kinase; Provisional
Probab=97.28 E-value=0.0012 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|.|.|++|+||||+++.++..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998864
No 285
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0011 Score=60.18 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=46.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcC
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNR 192 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 192 (247)
+..+-|.+||+||+|||++|+.+++..... | +.++.. +++.. .. ...+..+..++..-+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~sk---~v------GeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELFSK---YV------GESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHHHH---hc------CchHHHHHHHHHHHhh
Confidence 357889999999999999999999987765 3 333322 11111 11 1123334444444444
Q ss_pred CCcEEEEEeCCCCc
Q 037337 193 EKRILVILDNIWEH 206 (247)
Q Consensus 193 ~kr~LlvlDdv~~~ 206 (247)
--+++|.||+++..
T Consensus 526 ~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 526 VAPCIIFFDEIDAL 539 (693)
T ss_pred cCCeEEehhhHHhH
Confidence 34689999998754
No 286
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.28 E-value=0.0045 Score=53.65 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 100 MSTLNDILGALRNP----DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 100 ~~~~~~L~~~L~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
.+.+..+..++.++ +.++++++||.|+||||...+++.++.....-..+..++...
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 34445555555544 479999999999999966666666654211124466665544
No 287
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.27 E-value=0.0012 Score=57.61 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHHHhcccCCCCEEEEEEeCCC---CCHHHHHHHHHHHhC
Q 037337 99 RMSTLNDILGALRNPDISMLGICGMGGIGKTMLE-KEVARKAKNHKLFDLVVFSEMSQS---PDIRKVQGEIADKLG 171 (247)
Q Consensus 99 R~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~l~~~i~~~l~ 171 (247)
|.+.++.|..||.......|+|.||.|+||+.|+ .++.++ .+.+.+++|.+- .+-..++..++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 6678899999999888899999999999999999 666654 233788888643 344566666666665
No 288
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.26 E-value=0.0023 Score=53.59 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+.+|+|.|+.|+||||||+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988876654
No 289
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.26 E-value=0.0009 Score=58.89 Aligned_cols=48 Identities=21% Similarity=0.166 Sum_probs=35.6
Q ss_pred cccccchHHHHHHHHHhc-------CC---------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALR-------NP---------DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~-------~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++|.+...+.|...+. .. ....+.++|++|+|||+||+.++.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 457888888887754431 10 2356899999999999999999987643
No 290
>PRK06762 hypothetical protein; Provisional
Probab=97.26 E-value=0.0003 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+.+|.|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999876
No 291
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.0009 Score=58.12 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 103 LNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 103 ~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
++.+++.+.......+.|.|+||+|||+|.+.+.+.++..
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 3445555555566888999999999999999999988764
No 292
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.25 E-value=0.0021 Score=49.99 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC--CCCCHHHH------HHHHHHHhCCCC------CCCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS--QSPDIRKV------QGEIADKLGLTF------REESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~l------~~~i~~~l~~~~------~~~~~~ 180 (247)
-.+++|.|+.|+|||||++.++..... ..+.++++-. ...+.... ..++++.++... ..-+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 478999999999999999999876543 3344444211 11121111 122455554321 111222
Q ss_pred H-HHHHHHHHHcCCCcEEEEEeCCCCccc---hhhhcccCCC--CCCCeEEEEeeCchhhh
Q 037337 181 G-RARSLFSRLNREKRILVILDNIWEHLD---LQVVGIPHGD--DHKGCKVLFTARSLDVL 235 (247)
Q Consensus 181 ~-~~~~l~~~l~~~kr~LlvlDdv~~~~~---~~~l~~~~~~--~~~~s~iiiTtR~~~va 235 (247)
+ ..-.+...+.. ++-++++|+-....+ .+.+...+.. ...+..||++|.+.+.+
T Consensus 102 ~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 22234444444 458999999775533 2222222211 12256788998887764
No 293
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.24 E-value=0.00077 Score=54.93 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 102 TLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 102 ~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
+..+|++.+. ..+..+|+|+|+||+|||||.-.+...+..+.+--.++-|+-++.++-..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc
Confidence 3344555443 34578999999999999999999999988764333455566666555433
No 294
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.24 E-value=0.00056 Score=61.83 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCcccccchHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 91 KGYEAFESRMSTLNDILGALRN-----PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
....++.-..+-++++..||.. ...+++.++||+|+||||.++.+++.+. |+..-|.+
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3345556667778888888863 2357899999999999999999998864 45555654
No 295
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0054 Score=52.59 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----C
Q 037337 101 STLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT-----F 174 (247)
Q Consensus 101 ~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-----~ 174 (247)
..-+.|.+.+.+++ .....++|+.|+||+++|..++..+-.....+.. .|+.. ...+.+......+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC----RGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEEec
Confidence 44566777776654 5678899999999999999999887432111000 01110 0001111000000 0
Q ss_pred CC---CChHHHHHHHHHHHc----CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 175 RE---ESESGRARSLFSRLN----REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 175 ~~---~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
+. .-..+.+..+.+.+. .+++-++|+|+++.. ..-..+...+.....++.+|++|.+.+
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00 011223344444441 235678999999876 344555555555566777777776544
No 296
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.23 E-value=0.0011 Score=60.28 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=45.9
Q ss_pred CcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 93 YEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
+..++|+...++.+.+.+. ......|.|+|..|+|||++|+.+.+.-... -...+.++|..-+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~ 250 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALP 250 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCC
Confidence 3568898888888877665 2334678899999999999999998764322 2235667777654
No 297
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.23 E-value=0.005 Score=50.11 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..++.|.|.+|+|||+++.+++....... -..++|++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC
Confidence 36899999999999999999988765431 12467776544
No 298
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.23 E-value=0.00027 Score=50.21 Aligned_cols=25 Identities=44% Similarity=0.639 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|-|+|++|+|||+||..++.++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999887643
No 299
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.23 E-value=0.0013 Score=57.57 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 94 EAFESRMSTLNDILGALRNP--------------DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++|.++..+.+...+..+ ..+.+.++|++|+|||++|+.++......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45788888887775544321 24678999999999999999999987654
No 300
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.23 E-value=0.00085 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.|.++|++|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999987643
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00036 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
++.|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999986
No 302
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.22 E-value=0.0027 Score=52.98 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...++...+..++.|.|.+|+|||||+..+...+...
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 3444455678999999999999999999999987654
No 303
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00077 Score=61.83 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
..-|.++|++|+|||-||..++.....+ ++++..+. ++ ...+|. .++....+.++.+.-+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGPE----lL---~KyIGa------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGPE----LL---SKYIGA------SEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCHH----HH---HHHhcc------cHHHHHHHHHHhhccC
Confidence 3568899999999999999999766544 57766542 21 122332 2344666777777778
Q ss_pred cEEEEEeCCCCc
Q 037337 195 RILVILDNIWEH 206 (247)
Q Consensus 195 r~LlvlDdv~~~ 206 (247)
+|+|.+|++++.
T Consensus 761 PCiLFFDEfdSi 772 (952)
T KOG0735|consen 761 PCILFFDEFDSI 772 (952)
T ss_pred CeEEEecccccc
Confidence 999999999875
No 304
>PTZ00301 uridine kinase; Provisional
Probab=97.22 E-value=0.00036 Score=55.75 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.+|+|.|.+|+||||||+.+...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 305
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.21 E-value=0.00039 Score=55.48 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+..+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999987
No 306
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0088 Score=50.03 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccC------------CCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 102 TLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHK------------LFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 102 ~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
.-+.|.+.+..++ .....++|+.|+||+++|..++..+-... |.|..+.........
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~---------- 74 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRL---------- 74 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCc----------
Confidence 3456677776654 45677899999999999999998764321 222221111111000
Q ss_pred HhCCCCCCCChHHHHHHHHHHHc----CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 169 KLGLTFREESESGRARSLFSRLN----REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 169 ~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
-..+.+..+.+.+. .+++-++|+|+++.. +....+...+.....++.+|++|.+.+
T Consensus 75 ---------I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 75 ---------HSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred ---------CcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChh
Confidence 01122233333331 234568889999876 445566566655566777777766643
No 307
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0083 Score=51.01 Aligned_cols=125 Identities=8% Similarity=-0.029 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----C
Q 037337 101 STLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT-----F 174 (247)
Q Consensus 101 ~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-----~ 174 (247)
...+.|.+.+..++ .....++|+.|+||+++|..++..+-....-+. .|+.. ...+.+...-..+ .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEec
Confidence 44456666665554 567889999999999999999987643321000 01110 0011111110000 0
Q ss_pred C---CCChHHHHHHHHHHH----cCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 175 R---EESESGRARSLFSRL----NREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 175 ~---~~~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
+ ..-..+.+..+.+.+ ..+++-++|+|+++.. .....+...+.....++.+|++|.+.+
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 0 000112233344443 1234568899999876 345555555555566777777766543
No 308
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0096 Score=51.12 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 104 NDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 104 ~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++|.. +.+.-...+.++|+.|+||+++|..++..+-.
T Consensus 11 ~~l~~-~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 11 NRLQA-LRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred HHHHH-hcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444 23334578889999999999999999987644
No 309
>PRK03839 putative kinase; Provisional
Probab=97.18 E-value=0.00038 Score=54.17 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|.|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 310
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00071 Score=56.06 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=45.9
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 104 NDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 104 ~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
.+|+..+. .++..+|+|+|.||+|||||.-.+...+..+.+--.++-|+-|++++-..++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 44555554 34568999999999999999999999998776555677777777776555543
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.17 E-value=0.00057 Score=52.36 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS--PDIRKVQGEIADKLGLTFREESESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 192 (247)
-.+++|.|+.|+|||||.+.++..... ..+.++++-... .+..+.. .+.++....-+.-+...-.+...+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 478999999999999999999876543 345555432111 1111111 11121111111112222334444444
Q ss_pred CCcEEEEEeCCCCccch---hhhcccCCC-CCCCeEEEEeeCchhhh
Q 037337 193 EKRILVILDNIWEHLDL---QVVGIPHGD-DHKGCKVLFTARSLDVL 235 (247)
Q Consensus 193 ~kr~LlvlDdv~~~~~~---~~l~~~~~~-~~~~s~iiiTtR~~~va 235 (247)
++-++++|+-....+. ..+...+.. ...+..||++|.+.+.+
T Consensus 100 -~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 -NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4578999998765332 122122211 12366688898887644
No 312
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00043 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999875
No 313
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.17 E-value=0.0011 Score=56.64 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 96 FESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
++|+...+..+.+.+. ......|.|+|.+|+||+++|+.+.+.-... -...+-++|...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~ 61 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAAL 61 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCC
Confidence 3566666666655553 1234678899999999999999887643322 122345666643
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.17 E-value=0.0017 Score=48.65 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
-.+++|.|+.|.|||||++.++..... ..+.+|++-. ..++.-..-+.-+...-.+...+.. +
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-------------~~i~~~~~lS~G~~~rv~laral~~-~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-------------VKIGYFEQLSGGEKMRLALAKLLLE-N 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-------------EEEEEEccCCHHHHHHHHHHHHHhc-C
Confidence 478999999999999999999876543 2344444210 0000000011111122233444444 3
Q ss_pred cEEEEEeCCCCccc---hhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 195 RILVILDNIWEHLD---LQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 195 r~LlvlDdv~~~~~---~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
+-++++|+-....+ ...+...+... +..||++|.+.+.+.
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 57899999765533 12222222111 246888888777653
No 315
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.16 E-value=0.00032 Score=56.54 Aligned_cols=116 Identities=17% Similarity=0.062 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH-HhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCChHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVAR-KAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF----REESESGRARSLFS 188 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~-~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~~l~~ 188 (247)
...++.|.|+.|.||||+.+.++- .+..+ -.+.+|-.-..- ..+.+|+..++... ..++-...+.++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~--~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQ--IGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHH
Confidence 346889999999999999999987 33222 111222110000 00111111111110 01111222334444
Q ss_pred HHc-CCCcEEEEEeCCCCccc-------hhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 189 RLN-REKRILVILDNIWEHLD-------LQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 189 ~l~-~~kr~LlvlDdv~~~~~-------~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
.+. ..++.|++||+.....+ ...+...+.. ..++.+|++|...+++.
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHH
Confidence 442 23579999999753311 1112222222 25788999999999865
No 316
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.16 E-value=0.002 Score=51.56 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhC-------CCCCCCChHH------
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLG-------LTFREESESG------ 181 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~-------~~~~~~~~~~------ 181 (247)
..+.|.|.+|+|||+|+..+++... -+.++++.++.. ..+.++..++...-. ....+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 6788999999999999999999875 345688888765 345555555533211 1111122211
Q ss_pred HHHHHHHHH-cCCCcEEEEEeCCCC
Q 037337 182 RARSLFSRL-NREKRILVILDNIWE 205 (247)
Q Consensus 182 ~~~~l~~~l-~~~kr~LlvlDdv~~ 205 (247)
..-.+.+++ ..++++|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 122344444 245789999999854
No 317
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0033 Score=52.06 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 91 KGYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
....++-|-+..+++|.+..+- ..+.-|.+||.+|.|||-||+.|++.....
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 3456677888999998887641 146778899999999999999999877655
No 318
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0013 Score=54.78 Aligned_cols=102 Identities=20% Similarity=0.152 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
.+..+.|||++|.|||-+|+.++...... | +-++...-.. ........++........+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--f-----l~v~ss~lv~-------------kyiGEsaRlIRemf~yA~~~ 224 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--F-----LKVVSSALVD-------------KYIGESARLIRDMFRYAREV 224 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc--e-----EEeeHhhhhh-------------hhcccHHHHHHHHHHHHhhh
Confidence 36789999999999999999999988765 3 1111110000 00112223334444444444
Q ss_pred CcEEEEEeCCCCccc----------------hhhhcccC--CCCCCCeEEEEeeCchhhh
Q 037337 194 KRILVILDNIWEHLD----------------LQVVGIPH--GDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 194 kr~LlvlDdv~~~~~----------------~~~l~~~~--~~~~~~s~iiiTtR~~~va 235 (247)
.++.|.+|+++-... +-.+.... .+.-...++|.||...+..
T Consensus 225 ~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 225 IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 569999999873210 11111111 1334567899999888764
No 319
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.15 E-value=0.0009 Score=50.70 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFS 151 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 151 (247)
.+|-++|.+|+||||||+.+.+.+... -..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 578899999999999999999999876 3345555
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.15 E-value=0.002 Score=49.98 Aligned_cols=112 Identities=25% Similarity=0.231 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc---cC---CC-C-EEEEEEeCCCCCHHHHHHHHHHHhCCCCC---C----CCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN---HK---LF-D-LVVFSEMSQSPDIRKVQGEIADKLGLTFR---E----ESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~---~f-~-~~~wv~~~~~~~~~~l~~~i~~~l~~~~~---~----~~~ 179 (247)
-.+++|.|+.|+|||||.+.+..+... .. .| . .+.|+ .+ .+.+..++.... . -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 478999999999999999988632100 00 00 0 12222 11 345566654321 1 121
Q ss_pred H-HHHHHHHHHHcCC-CcEEEEEeCCCCccch---hhhcccCCC-CCCCeEEEEeeCchhhhh
Q 037337 180 S-GRARSLFSRLNRE-KRILVILDNIWEHLDL---QVVGIPHGD-DHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 180 ~-~~~~~l~~~l~~~-kr~LlvlDdv~~~~~~---~~l~~~~~~-~~~~s~iiiTtR~~~va~ 236 (247)
. ...-.+...+..+ .+-++++|+-....+. ..+...+.. ...|..||++|.+.+.+.
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1 1222333444342 1578889997655332 122121211 124667999999887753
No 321
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.15 E-value=0.0005 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
++..+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998765
No 322
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.0012 Score=52.91 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
.|+|+|-||+||||+|..++..+..+..| .+.-|++..++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999999987777655333 4566777776654
No 323
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.14 E-value=0.0071 Score=43.93 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHH----hcC---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 94 EAFESRMSTLNDILGA----LRN---PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~----L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..++|..-..+.+.+. +.+ +++-+++.+|.+|+|||.+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3456655444444444 433 357888999999999999999999984
No 324
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.14 E-value=0.00092 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+++|.|+.|.|||||.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.14 E-value=0.0016 Score=53.99 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHH
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESG 181 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 181 (247)
..+.|.+++ ......+.|.|+.|+||||++..+....... -..++.+.-........ ..++... ......
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~-----~~q~~v~--~~~~~~ 137 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPG-----INQVQVN--EKAGLT 137 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCC-----ceEEEeC--CcCCcC
Confidence 334444444 3445789999999999999999887765421 11233332111111100 0011111 111112
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 182 RARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 182 ~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
....+...|+. .+=.++++++.+.+....+.... ..|..++-|....++.
T Consensus 138 ~~~~l~~~lR~-~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlHa~~~~ 187 (264)
T cd01129 138 FARGLRAILRQ-DPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLHTNDAP 187 (264)
T ss_pred HHHHHHHHhcc-CCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEeccCCHH
Confidence 34455555655 46788999998876544332221 2344455555555543
No 326
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.14 E-value=0.0071 Score=50.15 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..++.|.|++|+|||+|+.+++.....+. -..++|++...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~ 69 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE 69 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc
Confidence 36888999999999999999988764331 23578887655
No 327
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00046 Score=51.31 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
.+-|.|+|.||+|||||+..++....- -|++++.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 356889999999999999999965443 36766654
No 328
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0069 Score=48.83 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCcccccchHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 92 GYEAFESRMSTLNDILG----ALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~----~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
....++|-+...+.|.+ ++......-|.+||..|+|||+|++.+.+.+..+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 34567886666666544 4445567789999999999999999999998776
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0062 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+++++|+.|+||||++..++....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~ 216 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV 216 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987643
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.01 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.....++|+.|+|||++|..++..+-
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 356788999999999999999999864
No 331
>PLN02200 adenylate kinase family protein
Probab=97.11 E-value=0.0018 Score=52.62 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..++.|.|++|+||||+|+.++..+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999988653
No 332
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0044 Score=55.46 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..+++++|+.|+||||++.+++..+..+.....+.++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 47999999999999999999998775432122455555543
No 333
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.11 E-value=0.0013 Score=60.15 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=44.8
Q ss_pred CCcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 92 GYEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
....++|....+.++.+.+. ......|.|+|.+|+|||++|+.+.+.-... -...+.++|...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~ 258 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL 258 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC
Confidence 34678999988888877664 2234567899999999999999998764322 123455666654
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.11 E-value=0.00059 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|.|.|++|+||||+|+.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998765
No 335
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.11 E-value=0.0058 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998763
No 336
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.10 E-value=0.0033 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|.|.|++|+||||+|+.++..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 337
>PRK14529 adenylate kinase; Provisional
Probab=97.10 E-value=0.0032 Score=50.69 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCC-EEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFD-LVV-FSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~-wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
|.|.|++|+||||+++.++..+... +.+ +.+ .-.+..........+.++.. ....+.+-....+.++|.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCC
Confidence 7889999999999999999987643 221 111 11222222223333333322 1222333344556666643223
Q ss_pred EEEEEeCCCCc
Q 037337 196 ILVILDNIWEH 206 (247)
Q Consensus 196 ~LlvlDdv~~~ 206 (247)
.-+|||++-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 55888988654
No 338
>PRK04040 adenylate kinase; Provisional
Probab=97.09 E-value=0.00053 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 339
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0024 Score=52.04 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 92 GYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+.++-|-+..+++|.+.+-- ..++-+..||++|.|||-+|+..+......
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 356677889999999887631 246778999999999999999887765443
No 340
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.09 E-value=0.0041 Score=56.11 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=66.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-cccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA-KNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------------- 175 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------------- 175 (247)
..+.+.|.|++|+|||+||.+++..- +.. -...+||+... +..++.+. +..++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyvs~eE--~~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFVTFEE--SPQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEec--CHHHHHHH-HHHcCCCHHHHhhcCceEEEecCchh
Confidence 35899999999999999999997653 321 13577887753 44454444 334432211
Q ss_pred -------CCChHHHHHHHHHHHcCCCcEEEEEeCCCCc----cc-------hhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 176 -------EESESGRARSLFSRLNREKRILVILDNIWEH----LD-------LQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 176 -------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~----~~-------~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
..+.......+...+..+++-.+++|.+... .. +..+...+ ...|+.+|+||.+.+.
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L--~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARL--KQIGVTTVMTTERIEE 169 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHH--HHCCCEEEEEecCccc
Confidence 1123445566666775556677899954321 11 11111111 2457888899876543
No 341
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.08 E-value=0.0079 Score=51.38 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=30.3
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 104 NDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 104 ~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..|++.+. ..+..+|+|.|++|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3456899999999999999999999888754
No 342
>PRK05439 pantothenate kinase; Provisional
Probab=97.08 E-value=0.0055 Score=51.81 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999886653
No 343
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0027 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.-.+++|.|+.|.|||||.+.++.-...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3478999999999999999999887543
No 344
>PTZ00494 tuzin-like protein; Provisional
Probab=97.08 E-value=0.12 Score=45.89 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=60.0
Q ss_pred cCCCcccccchHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRN---PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
+..+..++.|+.+-..+...|.. ..++++++.|..|+||++|.+......... .++|++.... +-++.+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGTE---DTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCCc---chHHHH
Confidence 44567789998887777666653 357999999999999999999998876654 5788887764 446778
Q ss_pred HHHhCCCCC
Q 037337 167 ADKLGLTFR 175 (247)
Q Consensus 167 ~~~l~~~~~ 175 (247)
.++++.+.-
T Consensus 439 VKALgV~nv 447 (664)
T PTZ00494 439 VRALGVSNV 447 (664)
T ss_pred HHHhCCCCh
Confidence 888886644
No 345
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.07 E-value=0.0018 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|+.|+|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987654
No 346
>PRK01184 hypothetical protein; Provisional
Probab=97.07 E-value=0.0062 Score=47.41 Aligned_cols=22 Identities=41% Similarity=0.798 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.+|+|+|++|+||||+++ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 478999999999999987 4443
No 347
>PRK13768 GTPase; Provisional
Probab=97.07 E-value=0.0043 Score=51.10 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+++|.|++|+||||++..+.......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578899999999999999999887654
No 348
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.07 E-value=0.00066 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 349
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0014 Score=59.31 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=44.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
..+.+.++|++|+|||.||+.+++..... | +.+... + ++.. .+ ...+..+..+.......
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~-~---l~sk---~v------Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS-E---LLSK---WV------GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH-H---Hhcc---cc------chHHHHHHHHHHHHHcC
Confidence 45689999999999999999999965543 3 222221 1 1000 01 11223344444444444
Q ss_pred CcEEEEEeCCCCc
Q 037337 194 KRILVILDNIWEH 206 (247)
Q Consensus 194 kr~LlvlDdv~~~ 206 (247)
.++.|.+|+++..
T Consensus 335 ~p~iiFiDEiDs~ 347 (494)
T COG0464 335 APSIIFIDEIDSL 347 (494)
T ss_pred CCcEEEEEchhhh
Confidence 6799999999854
No 350
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.06 E-value=0.00056 Score=54.31 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.+++|+|+.|.|||||.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999843
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.04 E-value=0.008 Score=49.77 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH----
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK--NHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES---- 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~---- 180 (247)
-..++|.|-+|+|||+|+.++++... .+..-+..+|+-+++.. ...+++..+...-... ..+.+..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46789999999999999999988754 11224678888887654 4566666665432111 1112221
Q ss_pred --HHHHHHHHHHcC--CCcEEEEEeCCCCc
Q 037337 181 --GRARSLFSRLNR--EKRILVILDNIWEH 206 (247)
Q Consensus 181 --~~~~~l~~~l~~--~kr~LlvlDdv~~~ 206 (247)
...-.+.|++.. ++++|+++||+...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 123356667643 57899999998654
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0092 Score=56.17 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLTF 174 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~ 174 (247)
..+++++|+.|+||||++.+++..+........+..+...... ...+-+....+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 4799999999999999999999877432212345555544321 12344455555555443
No 353
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.04 E-value=0.0088 Score=54.36 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=55.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------------CCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTF----------------REES 178 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----------------~~~~ 178 (247)
..++.|.|.+|+|||+|+.+++...... -..++|++.... ..++...+ ..++.+. ....
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4788899999999999999998776443 356788876553 44444433 3444221 1112
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 179 ESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 179 ~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
..+....+.+.+...+.-++|+|.+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 344556666666554556899999853
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.0038 Score=48.49 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
-.+++|.|+.|+|||||++.++.-...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 479999999999999999999876543
No 355
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.03 E-value=0.0037 Score=52.82 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 105 DILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 105 ~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+++.+. .+...+++|.|++|+|||||+..+...+...
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443 2456899999999999999999999987654
No 356
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.03 E-value=0.0016 Score=48.07 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++.+.|.-|+|||||++.+++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999987543
No 357
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0017 Score=51.29 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..+|+|-||=|+||||||+.+++++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999998743
No 358
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.02 E-value=0.0021 Score=59.94 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+-+.++|++|+|||++|+.++......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 458999999999999999998876543
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.0014 Score=50.73 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...++++.|++|+||||+|+.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999988643
No 360
>PRK00625 shikimate kinase; Provisional
Probab=97.02 E-value=0.00065 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|.++|++|+||||+++.+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988753
No 361
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.01 E-value=0.0033 Score=55.27 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=36.3
Q ss_pred CcccccchHHHHHHHHHh-------cC----C-------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGAL-------RN----P-------DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L-------~~----~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...++|.++..+.+...+ .. . ....+.++|++|+|||+||+.++..+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 455789888888775544 11 1 1257899999999999999999977653
No 362
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.0026 Score=49.09 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE----SESGRARSLFSRLN 191 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~----~~~~~~~~l~~~l~ 191 (247)
..+.|.|.+|+|||++|..++...... .+|+.... ....+....+........... .+......+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~-----~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ-----VLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC-----cEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 368899999999999999998764321 34544333 334455556555443222221 11122233322233
Q ss_pred CCCcEEEEEeCCC
Q 037337 192 REKRILVILDNIW 204 (247)
Q Consensus 192 ~~kr~LlvlDdv~ 204 (247)
++ -++++|.+.
T Consensus 76 ~~--~~VlID~Lt 86 (170)
T PRK05800 76 PG--RCVLVDCLT 86 (170)
T ss_pred CC--CEEEehhHH
Confidence 32 368888864
No 363
>PHA02774 E1; Provisional
Probab=96.99 E-value=0.0023 Score=57.94 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 101 STLNDILGALRNP-DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 101 ~~~~~L~~~L~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
.-+..|..++... +...+.|+|++|+|||.+|..+.+-+.. ..+.|++...
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G----~vi~fvN~~s 470 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG----KVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----CEEEEEECcc
Confidence 3455666666543 3578999999999999999999988753 2456777543
No 364
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.99 E-value=0.001 Score=57.56 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=46.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
..+-+.|||..|.|||.|.-.+|+....+..- ++ -..+.+..+-+.+....... ..+..+.+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~--------HFh~Fm~~vh~~l~~~~~~~---~~l~~va~~l~~- 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR--RV--------HFHEFMLDVHSRLHQLRGQD---DPLPQVADELAK- 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc--cc--------cccHHHHHHHHHHHHHhCCC---ccHHHHHHHHHh-
Confidence 46889999999999999999999987653111 11 11133333333332111111 113344455545
Q ss_pred CcEEEEEeCCCCc
Q 037337 194 KRILVILDNIWEH 206 (247)
Q Consensus 194 kr~LlvlDdv~~~ 206 (247)
+..||.||++.-.
T Consensus 127 ~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 127 ESRLLCFDEFQVT 139 (362)
T ss_pred cCCEEEEeeeecc
Confidence 3479999997643
No 365
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.97 E-value=0.0011 Score=54.30 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC---------CCCCHHHH--HHHHHHHhCCCCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS---------QSPDIRKV--QGEIADKLGLTFRE 176 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~---------~~~~~~~l--~~~i~~~l~~~~~~ 176 (247)
.+.++.++||+|+||||+.++++.++..+.....+ +++. -+.++++. +++...+.+..+.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv--iNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV--INLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE--EeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 35788899999999999999999998876333333 2332 22344443 35677776655443
No 366
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.97 E-value=0.00048 Score=53.91 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~ 137 (247)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 367
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00073 Score=56.22 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=33.3
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
+++.+... .+-+.++|++|+|||++++.......... | ...-++.+...+...
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~ 77 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQ 77 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHH
Confidence 44444433 35678999999999999999887654432 1 234456665544443
No 368
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.96 E-value=0.0016 Score=54.27 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
+.|+|+|-||+||||++..++..+...+ + .+.-++...+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 4688999999999999999999887653 2 3455555433
No 369
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.96 E-value=0.0022 Score=46.61 Aligned_cols=36 Identities=14% Similarity=-0.035 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
.+.|+|+.|+|||+.+..+............++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999999988766543345566664
No 370
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00093 Score=53.17 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+..+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 34789999999999999999999988754
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.95 E-value=0.00045 Score=50.32 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
|.|+|.+|+|||++|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987765
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.95 E-value=0.00094 Score=51.74 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988764
No 373
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.94 E-value=0.0013 Score=56.21 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=38.9
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+...++|.+..++.|.-.+.+.+..-+.+.|.+|+||||+|+.+..-+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456789999988887765544444568899999999999999998875
No 374
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.93 E-value=0.0043 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|.|.|++|+||||+|+.++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987654
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.93 E-value=0.00086 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 376
>PRK06217 hypothetical protein; Validated
Probab=96.93 E-value=0.00077 Score=52.62 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCC--CEEEEE
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLF--DLVVFS 151 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv 151 (247)
.|.|.|.+|+||||||+.++..+... ++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 48899999999999999999987542 23 445564
No 377
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.93 E-value=0.0032 Score=58.20 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK-LFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.++..|.|.+|+||||++..+...+.... .-...+.+......-...+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 36899999999999999999988764321 112456666665555555554443
No 378
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.92 E-value=0.0083 Score=53.42 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
-..++|.|.+|+|||+|+.++++..... +-+.++++-++... .+.++...+...-... ..+.+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4688999999999999999999887644 45777887776553 4556666655432211 1122221
Q ss_pred HHHHHHHHHHcC--CCcEEEEEeCCCC
Q 037337 181 GRARSLFSRLNR--EKRILVILDNIWE 205 (247)
Q Consensus 181 ~~~~~l~~~l~~--~kr~LlvlDdv~~ 205 (247)
...-.+.+++.. ++++||++|++..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 223456666632 5789999999854
No 379
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.92 E-value=0.002 Score=48.06 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
++|.|+|+.|+|||||++.+.+.+..+. +...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g-~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG-YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC-CceEEEEEccC
Confidence 4789999999999999999999988653 54555555554
No 380
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.92 E-value=0.0011 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999998753
No 381
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.91 E-value=0.002 Score=54.58 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
+++.+.|.||+||||+|...+-....++ ..+.-++..+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCcc
Confidence 6789999999999999998888765542 2344555544433
No 382
>PRK14527 adenylate kinase; Provisional
Probab=96.91 E-value=0.0011 Score=52.06 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...++.|.|++|+||||+|+.++..+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999987753
No 383
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.91 E-value=0.0079 Score=48.44 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=33.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
..++.|.|.+|+|||+++.+++...-.. -..++|++.... ..++...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER--EERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC--HHHHHHH
Confidence 5789999999999999999998764333 245778877653 4444333
No 384
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.90 E-value=0.009 Score=52.93 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
-..++|.|.+|+|||+|+.+++...... +-+.++|+-++... .+.+++..+...-... ..+.+..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 4678999999999999999998876532 24678888777654 3455666655432111 1122221
Q ss_pred HHHHHHHHHHc--CCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRLN--REKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l~--~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++. .++++||++||+...
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 22345667775 368899999998654
No 385
>PRK13947 shikimate kinase; Provisional
Probab=96.90 E-value=0.00088 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.|.|.|++|+||||+|+.+++.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.90 E-value=0.0009 Score=51.55 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998853
No 387
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.90 E-value=0.0021 Score=55.12 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
|...++|.++.+..|+-.+.++...-+.|.|.+|+|||||++.+..-+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 345688999998888777777666778899999999999999998776
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0047 Score=49.54 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=64.2
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCE--EEEEEeCCCCCHHHH-----HHHHHHHhCCCCCCC
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH-KLFDL--VVFSEMSQSPDIRKV-----QGEIADKLGLTFREE 177 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~--~~wv~~~~~~~~~~l-----~~~i~~~l~~~~~~~ 177 (247)
++..+-..+-.-..+.|++|+|||||.+.+++-.... ..|.+ +.-++-++. +..- ...+...+...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~dVl---- 201 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMDVL---- 201 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhhhc----
Confidence 3333333344456789999999999999999877643 23433 222222211 1100 01111111111
Q ss_pred ChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 178 SESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 178 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
+.....+-+.....+--+=++|+|++-..++..++...+ ..|.+++.|..-..+
T Consensus 202 d~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 202 DPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred ccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 111122333333433345789999999887766654443 558888888765544
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.89 E-value=0.00084 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998874
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.89 E-value=0.053 Score=48.71 Aligned_cols=119 Identities=24% Similarity=0.312 Sum_probs=68.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC---------CCC-----------EEEEE-----EeCCCCCHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK---------LFD-----------LVVFS-----EMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~f~-----------~~~wv-----~~~~~~~~~~l~~~i~~~ 169 (247)
-..|+++|+.|+|||||.+.++-++.... .|. ...|. ..-......+..+.++..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 47899999999999999999988765321 111 00000 000112345667778888
Q ss_pred hCCCCCCC-------ChHHHHHHHHHHHcCCCcEEEEEeCCCCccchh---hhcccCCCCCCCeEEEEeeCchhhh
Q 037337 170 LGLTFREE-------SESGRARSLFSRLNREKRILVILDNIWEHLDLQ---VVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 170 l~~~~~~~-------~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~---~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
+|...+.. +.......+..++.=+.+-+|+||+-.+..+.+ .+...+. .-.|. +|++|.+--+.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN-e~~Gg-vv~vSHDfrlI 569 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN-EFPGG-VVLVSHDFRLI 569 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh-ccCCc-eeeeechhhHH
Confidence 87664432 222333445555543457999999987765433 3333332 23344 67777765544
No 391
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.88 E-value=0.0061 Score=51.84 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCEEEEEEeCCCCC----HHHHHHHHHHHh
Q 037337 100 MSTLNDILGALRN---PDISMLGICGMGGIGKTMLEKEVARKAKNHKL-FDLVVFSEMSQSPD----IRKVQGEIADKL 170 (247)
Q Consensus 100 ~~~~~~L~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~----~~~l~~~i~~~l 170 (247)
+...+.|.+.+.+ +...+|+|.|.=|+|||++.+.+.+.++.... --.++|++...... ...++..|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4455666666654 45789999999999999999999999887611 12244555443333 445555555554
No 392
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0062 Score=47.01 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||++.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 393
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0034 Score=47.57 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD--IRKVQGEIADKLGLTFREESESGRARSLFSRLNR 192 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 192 (247)
..+++|.|+.|.|||||++.++..... ..+.++++-..... ... ....++....-..-+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999876542 34555553321111 111 111122111111112222234444444
Q ss_pred CCcEEEEEeCCCCccch---hhhcccCCC-CCCCeEEEEeeCchhhhh
Q 037337 193 EKRILVILDNIWEHLDL---QVVGIPHGD-DHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 193 ~kr~LlvlDdv~~~~~~---~~l~~~~~~-~~~~s~iiiTtR~~~va~ 236 (247)
.+-++++|+.....+. ..+...+.. ...+..++++|.+.+.+.
T Consensus 98 -~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 98 -NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3579999998765332 122111111 122567899998887765
No 394
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0087 Score=56.99 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHhcC------C--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 96 FESRMSTLNDILGALRN------P--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~~------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
++|.++.+..+.+.+.. + +..+..+.|+.|+|||-||+.++.-+-.. .+..+-++.+.... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~e-------vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEFQE-------VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhhhh-------hh
Confidence 56666666666666542 1 35678889999999999999999887544 34444454443221 33
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 168 DKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+..+.+.... ..+....|.+.+++..-.+|+||||+..
T Consensus 635 kligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 635 KLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3333332211 1223457778887755567779999876
No 395
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.88 E-value=0.00088 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 396
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.00093 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+|.|.|++|+||||+|+.++..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988653
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.87 E-value=0.016 Score=49.37 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+..++.++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999987654
No 398
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.86 E-value=0.0033 Score=57.25 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=41.6
Q ss_pred CcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 93 YEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
...++|....+..+.+.+. ......|.|+|..|+||+.+|+.+... .... -...+.++|..-+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~-s~r~-~~pfv~inca~~~ 267 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR-SPRG-KKPFLALNCASIP 267 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh-CCCC-CCCeEEeccccCC
Confidence 4568888887777766553 222356889999999999999996543 2221 1234567776644
No 399
>PLN02165 adenylate isopentenyltransferase
Probab=96.86 E-value=0.0017 Score=55.20 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.8
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 111 RNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 111 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+....+++|+|+.|+|||+||..++..+.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 444567999999999999999999998864
No 400
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.86 E-value=0.0043 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..|+|.|..|+||||+++.+++.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999988764
No 401
>PRK14530 adenylate kinase; Provisional
Probab=96.86 E-value=0.0011 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 402
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.86 E-value=0.0028 Score=53.83 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
.+++.+.|.||+||||+|...+-.+...+ ..+.-|+..+..+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhc
Confidence 47889999999999999999888777653 3477777766665555443
No 403
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.85 E-value=0.0019 Score=55.49 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|...++|.++....|...+.++...-+.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35577999999999988888888888888999999999999999987654
No 404
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0034 Score=57.23 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.0
Q ss_pred CCCcccccchHHHHH---HHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 91 KGYEAFESRMSTLND---ILGALRNPD---------ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~---L~~~L~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
....+..|.++..++ +++.|.++. ++-+.++|++|+|||.||+.++....+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 345667787765555 555666442 5678899999999999999999887765
No 405
>PRK06620 hypothetical protein; Validated
Probab=96.84 E-value=0.00097 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+.+.|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999887654
No 406
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.83 E-value=0.015 Score=51.77 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
-..++|.|.+|+|||||+.+++.....+. -+.++++-++... .+.+++..+...-... ..+.+..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999988776442 2467777776554 4556666665432211 1122221
Q ss_pred HHHHHHHHHH--cCCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRL--NREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l--~~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++ ..++++||++|++...
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2233466666 2568899999998643
No 407
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.82 E-value=0.0048 Score=48.34 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+|+|.|+.|+||||+++.++..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999998643
No 408
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.82 E-value=0.0034 Score=49.61 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=28.5
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+..+..++.+++.|.|++|+|||+++..+...+...
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3333433345789999999999999999998888775
No 409
>PRK05748 replicative DNA helicase; Provisional
Probab=96.82 E-value=0.23 Score=44.52 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=33.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
...++|-|.+|+|||+||..++.....+.. ..++|++... +..++...++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~fSlEm--s~~~l~~R~l 252 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIFSLEM--GAESLVMRML 252 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEEeCCC--CHHHHHHHHH
Confidence 378999999999999999999987643211 2455654433 4445544443
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.82 E-value=0.0044 Score=48.46 Aligned_cols=117 Identities=20% Similarity=0.121 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC--CCCHHHHHHHHH--HH--hCCC--CCCCCh-------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ--SPDIRKVQGEIA--DK--LGLT--FREESE------- 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~l~~~i~--~~--l~~~--~~~~~~------- 179 (247)
...|.|+|..|-||||.|.-.+-+...+. +...+.-.+.. .......+..+- .. .+.. ....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG-KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 47899999999999999999998876653 22222212222 233344443321 00 1111 111111
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCc-----cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 180 SGRARSLFSRLNREKRILVILDNIWEH-----LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 180 ~~~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
........+.+..++-=|||||++-.. .+.+.+...+...+.+..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112344455555656679999998654 22344444454567788999999987
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.82 E-value=0.001 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999986
No 412
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.81 E-value=0.0028 Score=52.46 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
++|+|.|-||+||||++..++..+...+ ..+.-|++..+.+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G--~kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG--KKVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 4677889999999999999999887542 2466676665543
No 413
>PRK13949 shikimate kinase; Provisional
Probab=96.81 E-value=0.0013 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|.|+|++|+||||+++.+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999998753
No 414
>PLN02924 thymidylate kinase
Probab=96.81 E-value=0.0088 Score=48.16 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
...|+|.|..|+||||++..+++.+.... +....+-..+......+..+.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g-~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLG-VAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CCceeeeCCCCCChHHHHHHHHHh
Confidence 46899999999999999999999998653 443333222223344555555544
No 415
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.81 E-value=0.0018 Score=52.85 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=24.9
Q ss_pred EEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 120 ICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 120 I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
|.||+|+||||+++.+.+.....+ ..++.|+..+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcchH
Confidence 689999999999999999887652 34566666554
No 416
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.80 E-value=0.0033 Score=53.45 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=42.1
Q ss_pred CCCcccccchHHHHH---HHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 037337 91 KGYEAFESRMSTLND---ILGALRNP--DISMLGICGMGGIGKTMLEKEVARKAKNHKLF 145 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~---L~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 145 (247)
....+++|..+..+. +.++..+. .-+.|.+.|++|+|||.||..+++.+....+|
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 346789997665544 45555444 35889999999999999999999999877666
No 417
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.80 E-value=0.00094 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+++.|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 418
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.80 E-value=0.0098 Score=42.82 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+.+.|.||+|||+++..++..+.... ..+.-++...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG--KPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCc
Confidence 68999999999999999999886542 2345555444
No 419
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.78 E-value=0.0024 Score=54.77 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred CcccccchHHHHH---HHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 037337 93 YEAFESRMSTLND---ILGALRNPD--ISMLGICGMGGIGKTMLEKEVARKAKNHKLF 145 (247)
Q Consensus 93 ~~~~~gR~~~~~~---L~~~L~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 145 (247)
..+++|..+..+. +.+++...+ -+.+.+.|++|+|||+||..+++.+..+..|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4689997766655 455555543 5899999999999999999999998866433
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.78 E-value=0.005 Score=53.96 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=38.9
Q ss_pred CcccccchHHHHHHHHHhcC---------C-----CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 93 YEAFESRMSTLNDILGALRN---------P-----DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~---------~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...++|.++..+.+..++.. . ....+.++|++|+|||+||+.++......
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 35588888888888766632 0 14678999999999999999999987543
No 421
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.77 E-value=0.0085 Score=56.66 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
+++.|.|.+|+||||+++.+...+..... ...+++.+...
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg 378 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTG 378 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCch
Confidence 58999999999999999999887765421 13455555443
No 422
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.77 E-value=0.0027 Score=50.19 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++..+++|+|++|+||||||+.+...+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999998753
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.77 E-value=0.0014 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998874
No 424
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.76 E-value=0.003 Score=52.71 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
.+++|+|-||+||||++..++..+...+ + .+.-|++...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G-~-rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG-K-KVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC-C-EEEEEeeCCc
Confidence 4688889999999999999999887542 2 3555555444
No 425
>PRK13975 thymidylate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998864
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|+|++|+|||||++.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 47899999999999999999998753
No 427
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.75 E-value=0.0014 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997654
No 428
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.75 E-value=0.0025 Score=49.25 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...+++|+|+.|+|||||+..+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45789999999999999999999988754
No 429
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.75 E-value=0.0081 Score=54.54 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEE-EEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCh------HHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLV-VFSEMSQSPD-IRKVQGEIADKLGLTFREESE------SGRARSL 186 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~~-~~~l~~~i~~~l~~~~~~~~~------~~~~~~l 186 (247)
-....|+|++|+|||||++.+++..... +-++. +++-+..... +.++...+-..+-......+. ....-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999876542 23333 3455554432 222222220111111111111 1223344
Q ss_pred HHHH-cCCCcEEEEEeCCCC
Q 037337 187 FSRL-NREKRILVILDNIWE 205 (247)
Q Consensus 187 ~~~l-~~~kr~LlvlDdv~~ 205 (247)
.+++ ..++.+||++|++..
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 5555 456789999999864
No 430
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.75 E-value=0.0022 Score=50.05 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFS 151 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 151 (247)
.++++|+|++|+|||||+..+....... |...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceee
Confidence 4789999999999999999999987654 5433333
No 431
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.75 E-value=0.0012 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=96.73 E-value=0.0035 Score=50.95 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CCChHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------------EESESGR 182 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------------~~~~~~~ 182 (247)
...+.|.|.+|+|||+|+.+++...... -..++|++.... ..++...+ .+++.+.. .......
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~-~s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL-RALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH-HHcCCChHHhccceEeecCCCCCHHHH
Confidence 3789999999999999999998776433 245677765554 34444443 22232211 1122222
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCcc------chhhhcccC--CCCCCCeEEEEeeCchhh
Q 037337 183 ARSLFSRLNREKRILVILDNIWEHL------DLQVVGIPH--GDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 183 ~~~l~~~l~~~kr~LlvlDdv~~~~------~~~~l~~~~--~~~~~~s~iiiTtR~~~v 234 (247)
...+.. ..+.-++|+|.+.... .+..+...+ .....|..||+|+....-
T Consensus 139 i~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 139 IARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 232222 2234689999986431 111110101 013567888888765443
No 433
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.021 Score=49.91 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=39.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ-SPDIRKVQGEIADKLGLT 173 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~ 173 (247)
.+.+|..+|.-|.||||.|-++++.++.+. + .+..|++.. .+...+-++.++.+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 468899999999999999999999988743 2 233333322 123344466777777644
No 434
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.73 E-value=0.0033 Score=50.27 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
++|+|.|-||+||||++..++..+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 468899999999999999999988754
No 435
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.73 E-value=0.012 Score=52.01 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
-..++|.|..|+|||||+..++.... .+.+++.-++... .+.++...++..-+.. ..+.+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999986432 3456666666544 3455555554432211 1112221
Q ss_pred HHHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++ ..++++||++||+...
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1223455666 3457899999998643
No 436
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.037 Score=45.05 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChH
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESES 180 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 180 (247)
+.+..+...+ .++..++.++|.-|+|||.+++.......... -+++++ -....+...+...++..+..+ +.....
T Consensus 38 e~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~--~~~v~i-~~~~~s~~~~~~ai~~~l~~~-p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNEDQ--VAVVVI-DKPTLSDATLLEAIVADLESQ-PKVNVN 112 (269)
T ss_pred HHHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCCc--eEEEEe-cCcchhHHHHHHHHHHHhccC-ccchhH
Confidence 3444444433 34457999999999999999995554444321 122222 234456677888888888763 222222
Q ss_pred ----HHHHHHHHHHcCCCc-EEEEEeCCCCc
Q 037337 181 ----GRARSLFSRLNREKR-ILVILDNIWEH 206 (247)
Q Consensus 181 ----~~~~~l~~~l~~~kr-~LlvlDdv~~~ 206 (247)
.....+.+....++| ..+++|+....
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L 143 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDL 143 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhh
Confidence 222344444455566 89999998765
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0014 Score=50.08 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVA 136 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~ 136 (247)
.|.|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999997
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.73 E-value=0.018 Score=50.92 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH-----
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES----- 180 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~----- 180 (247)
+...++|.|..|+|||||+..+++.... +.+++.-++... .+.++....+..-+.. ..+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 3578899999999999999999876543 455566665543 3445554444332211 1112221
Q ss_pred -HHHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 181 -GRARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 181 -~~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++ ..++++||++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1223455666 3467899999998643
No 439
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.72 E-value=0.033 Score=55.46 Aligned_cols=68 Identities=24% Similarity=0.247 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCC
Q 037337 100 MSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP--DIRKVQGEIADKLGLT 173 (247)
Q Consensus 100 ~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~ 173 (247)
....++|.+.+.++ .++.|+|..|+||||.+=.++.+.... ..+.+. +.++- ....+...++..++..
T Consensus 69 ~~~~~~Il~~l~~~--~vvii~g~TGSGKTTqlPq~lle~~~~--~~~~I~--~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 69 SAKREDIAEAIAEN--QVVIIAGETGSGKTTQLPKICLELGRG--SHGLIG--HTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred HHHHHHHHHHHHhC--ceEEEeCCCCCCcHHHHHHHHHHcCCC--CCceEe--cCCccHHHHHHHHHHHHHHhCCC
Confidence 45556677777655 699999999999999887777654321 233333 34333 3456667777777543
No 440
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.72 E-value=0.013 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
-..|+|+|..|+|||||++.+..-+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 478999999999999999999776553
No 441
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.71 E-value=0.0027 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
.+++|.|+.|.||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 442
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.71 E-value=0.019 Score=50.96 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
-..++|.|.+|+|||+|+.+++.....+. -..++++-++... .+.+++..+...-... ..+.+..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999988765432 3467787776554 4566666665432111 1112221
Q ss_pred HHHHHHHHHHc--CCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRLN--REKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l~--~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++. .++++||++|++...
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12345667773 357899999998654
No 443
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.71 E-value=0.0098 Score=54.30 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+...++|+|+.|+|||||++.+..-+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999876543
No 444
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.71 E-value=0.012 Score=52.05 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-----CC-CCCCCChH------HH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL-----GL-TFREESES------GR 182 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-----~~-~~~~~~~~------~~ 182 (247)
-..++|+|++|+|||||++.++..... ..++++..-....++.++....+... .. ...+.+.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 367999999999999999988764432 22344443223344554444333322 10 11112221 12
Q ss_pred HHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 183 ARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 183 ~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
.-.+.+++ ..++.+|+++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 23455555 3457899999998643
No 445
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.70 E-value=0.0018 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..++.|.|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 446
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.70 E-value=0.27 Score=43.82 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
...++|.|.+|+|||+++.+++........ ..+.|++...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlEm 234 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLEM 234 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCcC
Confidence 368999999999999999999887543211 3466765543
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.69 E-value=0.0026 Score=54.00 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=56.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHcCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL-GLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
...+.|.|+.|+|||||++.+....... ..++.+.-........ ....... .............+.+...|+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~- 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM- 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcC-
Confidence 3789999999999999999998765432 1233331111111100 0000000 0000011112223344445554
Q ss_pred CcEEEEEeCCCCccchhhhcccCCCCCCCe-EEEEeeCchhhh
Q 037337 194 KRILVILDNIWEHLDLQVVGIPHGDDHKGC-KVLFTARSLDVL 235 (247)
Q Consensus 194 kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s-~iiiTtR~~~va 235 (247)
..=.+++|++...+.+..+ .... .|. -++.|+...+++
T Consensus 218 ~pd~ii~gE~r~~e~~~~l-~a~~---~g~~~~i~T~Ha~~~~ 256 (308)
T TIGR02788 218 RPDRIILGELRGDEAFDFI-RAVN---TGHPGSITTLHAGSPE 256 (308)
T ss_pred CCCeEEEeccCCHHHHHHH-HHHh---cCCCeEEEEEeCCCHH
Confidence 4577899999987655443 3222 222 257777776654
No 448
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=50.90 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+..+++|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 449
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.68 E-value=0.0022 Score=51.08 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.5
Q ss_pred HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 109 ALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 109 ~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+.+++.++++++|+.|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34466789999999999999999999998754
No 450
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0019 Score=51.24 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFS 151 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 151 (247)
-.+++|.|++|+|||||.+.+..-...+ .+.+|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i 61 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV 61 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence 4799999999999999999986654433 345555
No 451
>PRK14532 adenylate kinase; Provisional
Probab=96.66 E-value=0.0016 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|.+.|++|+||||+|+.++..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 77899999999999999997653
No 452
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.65 E-value=0.0035 Score=47.74 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+.++.|.+++.+ +++++.|.+|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456677777754 689999999999999999998753
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.65 E-value=0.016 Score=52.64 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------------------ 175 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------------------ 175 (247)
..+++.|.|.+|+|||+|+.+++.....+ +-..++|++.... ..++...+. .++.+..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~--~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES--PEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC--HHHHHHHHH-HcCCCHHHHhhCCeEEEEecCcccc
Confidence 35899999999999999999998654432 1245788876653 444444432 2332100
Q ss_pred ------CCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 176 ------EESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 176 ------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
..+.......+.+.+...+.-.+|+|.+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 012234455566666444456799999864
No 454
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.65 E-value=0.0054 Score=57.31 Aligned_cols=63 Identities=13% Similarity=0.285 Sum_probs=42.4
Q ss_pred CcccccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 93 YEAFESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
...++|....+.++.+.... .....|.|+|..|+||+++|+.+.+.-... -...+.++|...+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~ 388 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP 388 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC
Confidence 35678888877777665541 223558899999999999999997754321 1223556666554
No 455
>PRK05922 type III secretion system ATPase; Validated
Probab=96.64 E-value=0.02 Score=50.65 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ-SPDIRKVQGEIADKLGLTF-------REESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~-------~~~~~~------ 180 (247)
-..++|.|..|+|||||.+.++.... .+...+..++. .....+.+.+......... .+.+..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999986543 23334433433 2344555555544432221 111111
Q ss_pred HHHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++ ..++++||++|++...
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233455666 3467899999998654
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.64 E-value=0.0016 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 037337 118 LGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~ 138 (247)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 457
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.64 E-value=0.0018 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 037337 118 LGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
|.|.|++|+||||+|+.++..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998753
No 458
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.63 E-value=0.0023 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVA 136 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~ 136 (247)
.++++|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999988
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.63 E-value=0.0016 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.++|+|++|+|||||++.++....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 368999999999999999998653
No 460
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.63 E-value=0.0074 Score=47.68 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+|+|.|+.|+||||+++.+.+.+...
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999987654
No 461
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.02 Score=47.50 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
+...++++|++|+||||++..++.....+. ..+.++++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D 112 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTD 112 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecC
Confidence 347999999999999999999988765431 235555554
No 462
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.62 E-value=0.016 Score=48.04 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhcccCCCCEE-EEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChHH---
Q 037337 115 ISMLGICGMGGIGKTMLE-KEVARKAKNHKLFDLV-VFSEMSQSP-DIRKVQGEIADKLGL-------TFREESESG--- 181 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~~--- 181 (247)
-..+.|.|.+|+|||+|| ..+.+... -+.+ +++-+.... ...++...+...-.. +..+.+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 55554322 2343 667666654 455666655533211 111122211
Q ss_pred ---HHHHHHHHHc-CCCcEEEEEeCCCCc
Q 037337 182 ---RARSLFSRLN-REKRILVILDNIWEH 206 (247)
Q Consensus 182 ---~~~~l~~~l~-~~kr~LlvlDdv~~~ 206 (247)
..-.+.+++. .++.+||++||+...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1234455552 357899999998754
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.62 E-value=0.0017 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..++|.|++|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999977543
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=96.61 E-value=0.018 Score=50.86 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCh------H
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLGLT-------FREESE------S 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~-------~~~~~~------~ 180 (247)
-..++|.|.+|+|||||+..++.... .+.+++..+... ..+.++........... ..+.+. .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46889999999999999998886443 234444444433 34556666665543211 111222 1
Q ss_pred HHHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
.....+.+++ ..++++||++||+...
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 2233455566 3467899999998654
No 465
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.61 E-value=0.0025 Score=50.50 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=51.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE---ESESGRARSLFSR 189 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~ 189 (247)
+.+.++.+.|.+|+||||++..+..... ....++++...-...-.-+..+...-...... .........+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEY 88 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999988764 23445565433211111112222211100000 0112234445555
Q ss_pred HcCCCcEEEEEeCCCCc-cchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 190 LNREKRILVILDNIWEH-LDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 190 l~~~kr~LlvlDdv~~~-~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
+.. +++=+|+|..-.. .....+...+...+....|++..-+++++
T Consensus 89 a~~-~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s 134 (199)
T PF06414_consen 89 AIE-NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELS 134 (199)
T ss_dssp HHH-CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHH
T ss_pred HHH-cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHH
Confidence 444 3577888886654 22332333333344455555554444443
No 466
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.60 E-value=0.0023 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|+|.|+.|+||||+++.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5689999999999999999998764
No 467
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.60 E-value=0.008 Score=49.55 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+|+|.|.+|+||||+++.+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999887643
No 468
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.60 E-value=0.0059 Score=52.84 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-EEEEEEeCCCCCHHHHHH--HHHHHhCCCCCCCChHHH
Q 037337 106 ILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFD-LVVFSEMSQSPDIRKVQG--EIADKLGLTFREESESGR 182 (247)
Q Consensus 106 L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~--~i~~~l~~~~~~~~~~~~ 182 (247)
+.+++.. ....|.|+|+.|+||||+++.+++.......-. .++.+.-.-......... ....+... .......
T Consensus 126 ~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v---~~~~~~~ 201 (358)
T TIGR02524 126 IIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI---PRHLNNF 201 (358)
T ss_pred HHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec---cccccCH
Confidence 3444432 358999999999999999999988764321111 222221111111111100 00001100 1111234
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCccchh
Q 037337 183 ARSLFSRLNREKRILVILDNIWEHLDLQ 210 (247)
Q Consensus 183 ~~~l~~~l~~~kr~LlvlDdv~~~~~~~ 210 (247)
...++..|.. .+-.+++.++.+.+...
T Consensus 202 ~~~l~~aLR~-~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 202 AAGVRNALRR-KPHAILVGEARDAETIS 228 (358)
T ss_pred HHHHHHHhcc-CCCEEeeeeeCCHHHHH
Confidence 4556666766 56788888888776554
No 469
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.60 E-value=0.011 Score=52.16 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCCChH------H
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT-------FREESES------G 181 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-------~~~~~~~------~ 181 (247)
-..++|.|..|+|||||+..++...... .+++...-.....+.++....+..-+.. ..+.+.. .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~~---~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDAD---VVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4688999999999999998888654422 2333222223334555555444332211 1112221 1
Q ss_pred HHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 182 RARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 182 ~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
..-.+.+++ ..++++||++||+...
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 223455666 3457899999998654
No 470
>PRK13946 shikimate kinase; Provisional
Probab=96.60 E-value=0.0024 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+.|++.|++|+||||+++.++..+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 367999999999999999999998754
No 471
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.60 E-value=0.0064 Score=56.03 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=31.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCC--CEEEEEEeCCCCCHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLF--DLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~l~~~i 166 (247)
++..|.|.+|+||||++..+...+...... ...+.+.+....-...+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 789999999999999999988776432111 123444444433334444333
No 472
>PRK13948 shikimate kinase; Provisional
Probab=96.59 E-value=0.0023 Score=49.92 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....|++.|+.|+||||+++.++..+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999988753
No 473
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.011 Score=49.72 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc-cCC-------CCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCC---------
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN-HKL-------FDLVVFSEMSQS-PDIRKVQGEIADKLGLTFREE--------- 177 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~-------f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~--------- 177 (247)
-.+.|+|.||+|||||+..++=.... ++. ...++||++... .++-+=++.++.+++.++.+.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 45667899999999999888654321 111 235888887654 344455567777777553211
Q ss_pred ------ChH--HHHHHHHHHHcCCCcEEEEEeCCC
Q 037337 178 ------SES--GRARSLFSRLNREKRILVILDNIW 204 (247)
Q Consensus 178 ------~~~--~~~~~l~~~l~~~kr~LlvlDdv~ 204 (247)
+.. .+..+....+.+.+.-++|+|-.-
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred cCCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 001 122333333344456788999753
No 474
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.59 E-value=0.0031 Score=50.20 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE----ESESGRARSLFSRL 190 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~l 190 (247)
..++.|.|+.|.||||+.+.++.-.--.+ .. .++.+.. ..+ .++..|...++...+. ..-.....++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~-~G--~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQ-IG--CFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHH-cC--CCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 37899999999999999999875432110 00 1111111 000 1222222233222111 01111122222222
Q ss_pred c-CCCcEEEEEeCCCCcc---c----hhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 191 N-REKRILVILDNIWEHL---D----LQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 191 ~-~~kr~LlvlDdv~~~~---~----~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
. -.++-|+++|+..... + ...+...+ ...++.+|++|...+++.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l--~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECL--IKKESTVFFATHFRDIAA 155 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHH
Confidence 1 1246899999985432 1 11121222 123788999999999876
No 475
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.58 E-value=0.011 Score=51.16 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
.++.|.|.+|+|||.||..++.++..........+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57899999999999999999999822222455666655443
No 476
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.57 E-value=0.0043 Score=52.31 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+.+.+++++.|-||+||||++..++..+...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 4456899999999999999999999987664
No 477
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.57 E-value=0.0056 Score=46.12 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
++++.|.+|+||||++..++..+.... ..+.++...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g--~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARG--KRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 378899999999999999998876542 234444443
No 478
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.57 E-value=0.0045 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+|+|.|-||+||||++.+++..+...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 57888999999999999999988654
No 479
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.56 E-value=0.02 Score=50.64 Aligned_cols=89 Identities=21% Similarity=0.347 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChHH----
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESESG---- 181 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 181 (247)
+-..++|.|..|+|||||...+++... .+..++.-++... .+.++....+..-+.. ..+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346889999999999999999987654 3567777776654 3445444433322111 11122211
Q ss_pred --HHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 182 --RARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 182 --~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
..-.+.+++ ..++++||++|++...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 123455666 3457899999998643
No 480
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.56 E-value=0.033 Score=47.77 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHh----CCC----------CCCCCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKL----GLT----------FREESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l----~~~----------~~~~~~ 179 (247)
-..++|.|..|+|||+|++++++... -+.++|+-++... .+.+++.++-+.- +.. ..+.+.
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 36889999999999999999988532 3578888887654 3455555543211 110 111111
Q ss_pred H------HHHHHHHHHH-cCCCcEEEEEeCCCC
Q 037337 180 S------GRARSLFSRL-NREKRILVILDNIWE 205 (247)
Q Consensus 180 ~------~~~~~l~~~l-~~~kr~LlvlDdv~~ 205 (247)
. ...-.+.+++ ..++.+|+++|++..
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 1 1223455555 345789999999853
No 481
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0028 Score=51.10 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccC------------------CCCE--EEEEEeCCCC----CHHHH-------
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHK------------------LFDL--VVFSEMSQSP----DIRKV------- 162 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~--~~wv~~~~~~----~~~~l------- 162 (247)
.-.+++|+|.+|+|||||++.++--.+... +|.. .+|-+-.... ++.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 347899999999999999999976544210 1111 1222221111 22222
Q ss_pred ---------HHHHHHHhCCCCC-------CCChHHH-HHHHHHHHcCCCcEEEEEeCCCCccc-------hhhhcccCCC
Q 037337 163 ---------QGEIADKLGLTFR-------EESESGR-ARSLFSRLNREKRILVILDNIWEHLD-------LQVVGIPHGD 218 (247)
Q Consensus 163 ---------~~~i~~~l~~~~~-------~~~~~~~-~~~l~~~l~~~kr~LlvlDdv~~~~~-------~~~l~~~~~~ 218 (247)
..+++.+++.+.. .-+-.+. --.+...|.- ++-+||+|+.-+..+ |+-+... .
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~-~PklLIlDEptSaLD~siQa~IlnlL~~l--~ 188 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP-EPKLLILDEPTSALDVSVQAQILNLLLEL--K 188 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc-CCCEEEecCchhhhcHHHHHHHHHHHHHH--H
Confidence 2344445554321 1121221 2234455544 467999999876533 2222111 2
Q ss_pred CCCCeEEEEeeCchhhhhc
Q 037337 219 DHKGCKVLFTARSLDVLSR 237 (247)
Q Consensus 219 ~~~~s~iiiTtR~~~va~~ 237 (247)
...+..+|+.|.+..++.+
T Consensus 189 ~~~~lt~l~IsHdl~~v~~ 207 (252)
T COG1124 189 KERGLTYLFISHDLALVEH 207 (252)
T ss_pred HhcCceEEEEeCcHHHHHH
Confidence 4567779999999998864
No 482
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.56 E-value=0.0047 Score=48.87 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=31.5
Q ss_pred cccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.+++|.+.....|.-..... .-+.++|++|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHh
Confidence 45778777777766655543 67889999999999999999764
No 483
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=96.56 E-value=0.019 Score=45.98 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCCccc---hhhhcccCCCCCCCeEEEEeeCchhhhhc
Q 037337 193 EKRILVILDNIWEHLD---LQVVGIPHGDDHKGCKVLFTARSLDVLSR 237 (247)
Q Consensus 193 ~kr~LlvlDdv~~~~~---~~~l~~~~~~~~~~s~iiiTtR~~~va~~ 237 (247)
+..-+++|||++...+ ...+...+......+.+||||.++.++..
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457899999987643 22232233333456899999999998763
No 484
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.021 Score=45.76 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCccchhhhccc---CC-CCCCCeEEEEeeCchhhhhccCCCccc
Q 037337 184 RSLFSRLNREKRILVILDNIWEHLDLQVVGIP---HG-DDHKGCKVLFTARSLDVLSRKMDSQQN 244 (247)
Q Consensus 184 ~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~---~~-~~~~~s~iiiTtR~~~va~~~~~~~~~ 244 (247)
..+.+.+.- ++-+.|||+.++..+.+++... +. -...++-+++.|....++.. ..+...
T Consensus 153 ~EilQ~~~l-ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~-i~pD~v 215 (251)
T COG0396 153 NEILQLLLL-EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDY-IKPDKV 215 (251)
T ss_pred HHHHHHHhc-CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhh-cCCCEE
Confidence 345555544 4579999999998776654211 10 12346668888888888874 444433
No 485
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0035 Score=47.98 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
--++++.|++|+||+||.+.+|..+... .+.+|+.
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 3578899999999999999999988764 3566663
No 486
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.54 E-value=0.02 Score=47.58 Aligned_cols=90 Identities=20% Similarity=0.121 Sum_probs=62.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
.+.++++|..|+|||+-++.+++.. +..+.+..++.++...+...++......... ........+...+.. .
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~-~~~d~~~~~~~~l~~-~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATDG-TINDLTERLMIRLRD-T 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHcc-C
Confidence 3589999999999999999998653 3345567777777777777777665443332 233445666666655 5
Q ss_pred cEEEEEeCCCCc--cchhhh
Q 037337 195 RILVILDNIWEH--LDLQVV 212 (247)
Q Consensus 195 r~LlvlDdv~~~--~~~~~l 212 (247)
.-+++.|+.+.. ..++.+
T Consensus 166 ~~~iivDEA~~L~~~ale~l 185 (297)
T COG2842 166 VRLIIVDEADRLPYRALEEL 185 (297)
T ss_pred cceeeeehhhccChHHHHHH
Confidence 688899998875 334444
No 487
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.54 E-value=0.011 Score=50.30 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..+.|.|..|+||||+++.+........ .+.++ +.+.....+. +.. -...... ........+.+...|+. ++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~-~~~ri-vtiEd~~El~-~~~--~n~v~l~--~~~~~~~~~lv~~aLR~-~P 216 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASA-PEDRL-VILEDTAEIQ-CAA--ENAVALH--TSDTVDMARLLKSTMRL-RP 216 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCC-CCceE-EEecCCcccc-cCC--CCEEEec--cCCCcCHHHHHHHHhCC-CC
Confidence 4678999999999999999988753210 11122 2222221110 000 0000000 01112233445556655 45
Q ss_pred EEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 196 ILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 196 ~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
=.|++.++...+.+..+ .....++.| .+-|....+
T Consensus 217 D~IivGEiRg~ea~~~l-~a~~tGh~G--~itTiHA~s 251 (323)
T PRK13833 217 DRIIVGEVRDGAALTLL-KAWNTGHPG--GVTTIHSNT 251 (323)
T ss_pred CEEEEeecCCHHHHHHH-HHHcCCCCc--eEEEECCCC
Confidence 77889999887766544 332222233 344544444
No 488
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.53 E-value=0.019 Score=50.35 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH-hcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK-AKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREK 194 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 194 (247)
.-+.+.|+.|+|||.||..+... .-..+ ...+..+++..+.. .....+. +
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG-----------~f~T~a~Lf~~L~~----------------~~lg~v~--~ 260 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG-----------GTITVAKLFYNIST----------------RQIGLVG--R 260 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC-----------CcCcHHHHHHHHHH----------------HHHhhhc--c
Confidence 56778999999999999998776 22221 33466666666554 1222222 2
Q ss_pred cEEEEEeCCCC
Q 037337 195 RILVILDNIWE 205 (247)
Q Consensus 195 r~LlvlDdv~~ 205 (247)
-=+||||++..
T Consensus 261 ~DlLI~DEvgy 271 (449)
T TIGR02688 261 WDVVAFDEVAT 271 (449)
T ss_pred CCEEEEEcCCC
Confidence 35889999875
No 489
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=96.53 E-value=0.006 Score=49.97 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
+.|+|||-||+||||.+.++...+... -..+.-|-|++..
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~--G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM--GKKVLQIGCDPKA 40 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESSSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc--cceeeEecccCCC
Confidence 368999999999999999999988765 3457777776554
No 490
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0025 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+.++|+|++|+|||||+..+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4688999999999999999999754
No 491
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.52 E-value=0.005 Score=56.54 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=37.4
Q ss_pred CcccccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++..+.|.+..+.|.+.... ....+|.++|++|+||||+|+.++..+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45556677777766665542 24568899999999999999999998875
No 492
>PLN02674 adenylate kinase
Probab=96.51 E-value=0.012 Score=48.02 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|.|++|+||||+|..++.++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999998764
No 493
>PRK08760 replicative DNA helicase; Provisional
Probab=96.51 E-value=0.41 Score=43.24 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
..++.|.|.+|+|||++|..++.....+... .+++++.. -+..++...++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~fSlE--Ms~~ql~~Rl~ 278 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVFSME--MSASQLAMRLI 278 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEEecc--CCHHHHHHHHH
Confidence 3789999999999999999999876432122 35555433 23344444443
No 494
>PLN02459 probable adenylate kinase
Probab=96.51 E-value=0.016 Score=47.73 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+.|.|++|+||||+|..++..+.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477789999999999999998764
No 495
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0024 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+--+|+|.|++|+|||||.+.++.-..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999986543
No 496
>PRK04132 replication factor C small subunit; Provisional
Probab=96.50 E-value=0.02 Score=54.65 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=57.5
Q ss_pred c--CCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEE
Q 037337 122 G--MGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVI 199 (247)
Q Consensus 122 G--~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~Llv 199 (247)
| |.++||||+|..++++.-....-..++-+++++......+ +.+...+....+. .+.+.-++|
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEE
Confidence 7 8899999999999998743321134677888876665543 3333322110000 011357999
Q ss_pred EeCCCCcc--chhhhcccCCCCCCCeEEEEeeCch
Q 037337 200 LDNIWEHL--DLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 200 lDdv~~~~--~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
||+++... +...+...+......+++|+++.+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 99999873 4455544444334567777766544
No 497
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.50 E-value=0.022 Score=48.59 Aligned_cols=88 Identities=23% Similarity=0.333 Sum_probs=52.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCC-------CCCCChH------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS-QSPDIRKVQGEIADKLGLT-------FREESES------ 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~l~~~i~~~l~~~-------~~~~~~~------ 180 (247)
...++|.|..|+|||||.+.++..... +..++.-+. ....+.++.......-+.. ..+.+..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999999988875442 333444443 3345555555555442211 1112221
Q ss_pred HHHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 181 GRARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
...-.+.+++ ..++.+||++||+...
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1223445555 3457899999997643
No 498
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.49 E-value=0.0055 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+|++.|-||+||||++.+++..+...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~ 27 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL 27 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC
Confidence 47788999999999999999877644
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.49 E-value=0.0026 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.++.+.|++|+||||+|+.++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998875
No 500
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.48 E-value=0.003 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+.|+|++|+||||+++.+++.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999998874
Done!